Proteins Positions within proteins Leading proteins Protein Protein names Gene names Fasta headers Localization prob Score diff PEP Score Delta score Score for localization Localization prob Control 1 Score diff Control 1 PEP Control 1 Score Control 1 Localization prob Control 2 Score diff Control 2 PEP Control 2 Score Control 2 Localization prob Control 3 Score diff Control 3 PEP Control 3 Score Control 3 Localization prob PEI Infil 1 Score diff PEI Infil 1 PEP PEI Infil 1 Score PEI Infil 1 Localization prob PEI Infil 2 Score diff PEI Infil 2 PEP PEI Infil 2 Score PEI Infil 2 Localization prob PEI Infil 3 Score diff PEI Infil 3 PEP PEI Infil 3 Score PEI Infil 3 Localization prob PEI LL 1 Score diff PEI LL 1 PEP PEI LL 1 Score PEI LL 1 Localization prob PEI LL 2 Score diff PEI LL 2 PEP PEI LL 2 Score PEI LL 2 Localization prob PEI LL 3 Score diff PEI LL 3 PEP PEI LL 3 Score PEI LL 3 Localization prob SHP20 Infil 1 Score diff SHP20 Infil 1 PEP SHP20 Infil 1 Score SHP20 Infil 1 Localization prob SHP20 Infil 2 Score diff SHP20 Infil 2 PEP SHP20 Infil 2 Score SHP20 Infil 2 Localization prob SHP20 Infil 3 Score diff SHP20 Infil 3 PEP SHP20 Infil 3 Score SHP20 Infil 3 Localization prob SHP20 LL 1 Score diff SHP20 LL 1 PEP SHP20 LL 1 Score SHP20 LL 1 Localization prob SHP20 LL 2 Score diff SHP20 LL 2 PEP SHP20 LL 2 Score SHP20 LL 2 Localization prob SHP20 LL 3 Score diff SHP20 LL 3 PEP SHP20 LL 3 Score SHP20 LL 3 Diagnostic peak Number of Oxidation (M) Amino acid Sequence window Modification window Peptide window coverage Oxidation (M) Probabilities Oxidation (M) Score diffs Position in peptide Charge Mass error [ppm] Identification type Control 1 Identification type Control 2 Identification type Control 3 Identification type PEI Infil 1 Identification type PEI Infil 2 Identification type PEI Infil 3 Identification type PEI LL 1 Identification type PEI LL 2 Identification type PEI LL 3 Identification type SHP20 Infil 1 Identification type SHP20 Infil 2 Identification type SHP20 Infil 3 Identification type SHP20 LL 1 Identification type SHP20 LL 2 Identification type SHP20 LL 3 Intensity Intensity___1 Intensity___2 Intensity___3 Ratio mod/base Intensity Control 1 Intensity Control 2 Intensity Control 3 Intensity PEI Infil 1 Intensity PEI Infil 2 Intensity PEI Infil 3 Intensity PEI LL 1 Intensity PEI LL 2 Intensity PEI LL 3 Intensity SHP20 Infil 1 Intensity SHP20 Infil 2 Intensity SHP20 Infil 3 Intensity SHP20 LL 1 Intensity SHP20 LL 2 Intensity SHP20 LL 3 Ratio mod/base Control 1 Ratio mod/base Control 2 Ratio mod/base Control 3 Ratio mod/base PEI Infil 1 Ratio mod/base PEI Infil 2 Ratio mod/base PEI Infil 3 Ratio mod/base PEI LL 1 Ratio mod/base PEI LL 2 Ratio mod/base PEI LL 3 Ratio mod/base SHP20 Infil 1 Ratio mod/base SHP20 Infil 2 Ratio mod/base SHP20 Infil 3 Ratio mod/base SHP20 LL 1 Ratio mod/base SHP20 LL 2 Ratio mod/base SHP20 LL 3 Intensity Control 1___1 Intensity Control 1___2 Intensity Control 1___3 Intensity Control 2___1 Intensity Control 2___2 Intensity Control 2___3 Intensity Control 3___1 Intensity Control 3___2 Intensity Control 3___3 Intensity PEI Infil 1___1 Intensity PEI Infil 1___2 Intensity PEI Infil 1___3 Intensity PEI Infil 2___1 Intensity PEI Infil 2___2 Intensity PEI Infil 2___3 Intensity PEI Infil 3___1 Intensity PEI Infil 3___2 Intensity PEI Infil 3___3 Intensity PEI LL 1___1 Intensity PEI LL 1___2 Intensity PEI LL 1___3 Intensity PEI LL 2___1 Intensity PEI LL 2___2 Intensity PEI LL 2___3 Intensity PEI LL 3___1 Intensity PEI LL 3___2 Intensity PEI LL 3___3 Intensity SHP20 Infil 1___1 Intensity SHP20 Infil 1___2 Intensity SHP20 Infil 1___3 Intensity SHP20 Infil 2___1 Intensity SHP20 Infil 2___2 Intensity SHP20 Infil 2___3 Intensity SHP20 Infil 3___1 Intensity SHP20 Infil 3___2 Intensity SHP20 Infil 3___3 Intensity SHP20 LL 1___1 Intensity SHP20 LL 1___2 Intensity SHP20 LL 1___3 Intensity SHP20 LL 2___1 Intensity SHP20 LL 2___2 Intensity SHP20 LL 2___3 Intensity SHP20 LL 3___1 Intensity SHP20 LL 3___2 Intensity SHP20 LL 3___3 Reverse Potential contaminant id Protein group IDs Positions Position Peptide IDs Mod. peptide IDs Evidence IDs MS/MS IDs Best localization evidence ID Best localization MS/MS ID Best localization raw file Best localization scan number Best score evidence ID Best score MS/MS ID Best score raw file Best score scan number Best PEP evidence ID Best PEP MS/MS ID Best PEP raw file Best PEP scan number F4K007;A0A1P8BF32;Q39043;Q9LKR3 525;585;580;580 F4K007 F4K007 Mediator of RNA polymerase II transcription subunit 37f;Mediator of RNA polymerase II transcription subunit 37a BIP2;MED37F;MED37A tr|F4K007|F4K007_ARATH Heat shock protein 70 (Hsp 70) family protein OS=Arabidopsis thaliana OX=3702 GN=BIP2 PE=1 SV=1;tr|A0A1P8BF32|A0A1P8BF32_ARATH Heat shock protein 70 (Hsp 70) family protein OS=Arabidopsis thaliana OX=3702 GN=BIP2 PE=1 SV=1;sp|Q39043| 1 63.1476 0.0172025 63.148 44.365 63.148 0 0 NaN 0 0 NaN 0 0 NaN 1 63.1476 0.0172025 63.148 1 M EKIDARNALETYVYNMKNQVSDKDKLADKLE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPXXXXXXXXXXXXXX NALETYVYNM(1)K NALETYVYNM(63)K 10 2 -0.79831 By MS/MS By MS/MS By matching By MS/MS 22347000 22347000 0 0 NaN 0 0 3239800 0 0 0 6644000 6242300 6220600 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 3239800 0 0 0 0 0 0 0 0 0 0 0 6644000 0 0 6242300 0 0 6220600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 525 525 301 311 3616;3617;3618;3619 1796 3616 1796 22-052-Murphy-SHP20-PEI-LL-3 24254 3616 1796 22-052-Murphy-SHP20-PEI-LL-3 24254 3616 1796 22-052-Murphy-SHP20-PEI-LL-3 24254 Q8W112;A0A1P8BG25 53;131 Q8W112 Q8W112 At5g20950 tr|Q8W112|Q8W112_ARATH Beta-D-glucan exohydrolase-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g20950 PE=1 SV=1;tr|A0A1P8BG25|A0A1P8BG25_ARATH Glycosyl hydrolase family protein OS=Arabidopsis thaliana OX=3702 GN=At5g20950 PE=1 SV=1 1 70.9125 4.52878E-07 74.415 51.396 70.912 0 0 NaN 0 0 NaN 1 68.4215 4.52878E-07 74.415 1 58.9811 0.0102076 58.981 1 58.9811 0.0102076 58.981 0 0 NaN 1 60.7988 0.00619307 60.799 1 70.9125 7.67703E-05 70.912 1 62.7172 0.00772847 62.717 1 66.9932 0.00708191 66.993 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 M RDLMNRMTLQEKIGQMVQIERSVATPEVMKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPXXXXXXXXXX IGQM(1)VQIER IGQM(71)VQIER 4 2 -0.29401 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 319500000 319500000 0 0 2.9214 2501800 0 3117400 16948000 11399000 7341600 31638000 30777000 20289000 5898300 24514000 72204000 7035000 4218200 8702600 NaN NaN NaN NaN NaN 7.5226 NaN NaN NaN 7.4725 NaN 1.0208 0.34498 NaN 0.52816 2501800 0 0 0 0 0 3117400 0 0 16948000 0 0 11399000 0 0 7341600 0 0 31638000 0 0 30777000 0 0 20289000 0 0 5898300 0 0 24514000 0 0 72204000 0 0 7035000 0 0 4218200 0 0 8702600 0 0 1 18 53 53 217 224 2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700 1325;1326;1327;1328;1329;1330;1331;1332 2681 1332 22-052-Murphy-SHP20-PEI-LL-3 9957 2676 1327 22-052-Murphy-SHP20-PEI-infil-1 9541 2676 1327 22-052-Murphy-SHP20-PEI-infil-1 9541 A8MS37;B3H4B8;Q9LRR9;Q2V3V9 53;59;60;60 A8MS37 A8MS37 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 At3g14420;GLO1 tr|A8MS37|A8MS37_ARATH (S)-2-hydroxy-acid oxidase OS=Arabidopsis thaliana OX=3702 GN=GOX1 PE=1 SV=1;tr|B3H4B8|B3H4B8_ARATH (S)-2-hydroxy-acid oxidase OS=Arabidopsis thaliana OX=3702 GN=GOX1 PE=1 SV=1;sp|Q9LRR9|GLO1_ARATH Glycolate oxidase 1 OS=Arabidopsis 1 67.9808 2.035E-08 67.981 51.205 67.981 1 67.9808 2.035E-08 67.981 1 M CDFRPRILIDVSKIDMTTTVLGFKISMPIMV X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPPXXXXXXX IDM(1)TTTVLGFK IDM(68)TTTVLGFK 3 2 -2.2557 By MS/MS 0 0 0 0 NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 27 53 53 205 212 2545 1278 2545 1278 22-052-Murphy-SHP20infil-3 34950 2545 1278 22-052-Murphy-SHP20infil-3 34950 2545 1278 22-052-Murphy-SHP20infil-3 34950 A8MSE0;Q944S8 1;1 A8MSE0 A8MSE0 At4g21105 tr|A8MSE0|A8MSE0_ARATH Cytochrome-c oxidase/ electron carrier OS=Arabidopsis thaliana OX=3702 GN=At4g21105 PE=1 SV=1;tr|Q944S8|Q944S8_ARATH At4g21108/At4g21108 OS=Arabidopsis thaliana OX=3702 GN=At4g21105 PE=1 SV=1 1 46.8912 0.0224295 46.891 37.937 46.891 0 0 NaN 0 0 NaN 0 0 NaN 1 46.1582 0.0224295 46.158 1 46.8912 0.0224295 46.891 0 0 NaN 0 0 NaN 0 0 NaN M _______________MLTETPFRPREKLLEK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPXXXXXX M(1)LTETPFRPR M(47)LTETPFRPR 1 3 0.27237 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 95860000 95860000 0 0 NaN 1345800 1245700 1635600 0 0 0 29957000 23350000 0 0 12692000 23317000 0 2318200 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 1345800 0 0 1245700 0 0 1635600 0 0 0 0 0 0 0 0 0 0 0 29957000 0 0 23350000 0 0 0 0 0 0 0 0 12692000 0 0 23317000 0 0 0 0 0 2318200 0 0 0 0 0 3 28 1 1 299 309 3597;3598;3599;3600;3601;3602;3603;3604 1793;1794 3598 1794 22-052-Murphy-SHP20-PEI-LL-2 12108 3598 1794 22-052-Murphy-SHP20-PEI-LL-2 12108 3598 1794 22-052-Murphy-SHP20-PEI-LL-2 12108 C0SUW8 784 C0SUW8 C0SUW8 At1g21160 tr|C0SUW8|C0SUW8_ARATH Eukaryotic translation initiation factor 5B (Fragment) OS=Arabidopsis thaliana OX=3702 GN=At1g21160 PE=1 SV=1 1 83.2061 5.2906E-06 83.206 40.607 83.206 0 0 NaN 0 0 NaN 0 0 NaN 1 83.2061 5.2906E-06 83.206 0 0 NaN 0 0 NaN 0 0 NaN 1 M LTPYPMNEMRVTGTYMPHREVKAAQGIKIAA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX VTGTYM(1)PHREVK VTGTYM(83)PHREVK 6 2 -1.0091 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 112000000 112000000 0 0 NaN 6056900 4897500 4007400 0 0 0 48219000 20015000 27958000 0 0 0 0 843090 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 6056900 0 0 4897500 0 0 4007400 0 0 0 0 0 0 0 0 0 0 0 48219000 0 0 20015000 0 0 27958000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 843090 0 0 0 0 0 4 31 784 784 470 484 5774;5775;5776;5777;5778;5779;5780 2971 5774 2971 22-052-Murphy-SHP20-PEI-LL-1 2622 5774 2971 22-052-Murphy-SHP20-PEI-LL-1 2622 5774 2971 22-052-Murphy-SHP20-PEI-LL-1 2622 F4HUA0;Q8W4H7;Q8GTY0;Q0WL56;P0DH99 340;417;417;417;417 F4HUA0 F4HUA0 Elongation factor 1-alpha 2;Elongation factor 1-alpha 4;Elongation factor 1-alpha 3;Elongation factor 1-alpha 1 At1g07930;A2;A4;A3;A1 tr|F4HUA0|F4HUA0_ARATH GTP binding Elongation factor Tu family protein OS=Arabidopsis thaliana OX=3702 GN=At1g07930 PE=1 SV=1;sp|Q8W4H7|EF1A2_ARATH Elongation factor 1-alpha 2 OS=Arabidopsis thaliana OX=3702 GN=A2 PE=1 SV=2;sp|Q8GTY0|EF1A4_ARATH Elongation 1 62.2 0.00269848 62.2 29.979 62.2 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 41.3995 0.0196367 41.399 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 62.2 0.00269848 62.2 1 M TFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPXXXXX DM(1)RQTVAVGVIK DM(62)RQTVAVGVIK 2 2 -1.4087 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 246800000 246800000 0 0 NaN 4615600 4925200 5240500 8616200 0 3914900 6695000 12061000 7097600 37408000 10895000 0 11718000 7365000 30481000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 4615600 0 0 4925200 0 0 5240500 0 0 8616200 0 0 0 0 0 3914900 0 0 6695000 0 0 12061000 0 0 7097600 0 0 37408000 0 0 10895000 0 0 0 0 0 11718000 0 0 7365000 0 0 30481000 0 0 5 36 340 340 116 120 1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423 780;781;782 1401 782 22-052-Murphy-SHP20-LL-3 14235 1401 782 22-052-Murphy-SHP20-LL-3 14235 1401 782 22-052-Murphy-SHP20-LL-3 14235 F4III4;Q9SJ12 87;87 F4III4 F4III4 Probable ATP synthase 24 kDa subunit, mitochondrial MGP1 tr|F4III4|F4III4_ARATH MALE GAMETOPHYTE DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=MGP1 PE=1 SV=1;sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21870 PE=1 SV=1 1 71.3439 1.20712E-29 71.344 57.512 71.344 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 71.3439 1.20712E-29 71.344 0 0 NaN 0 0 NaN 1 54.5006 1.66222E-11 54.501 0 0 NaN 0 0 NaN 0 0 NaN 1 M LDPEDPAAVKQYANVMKTIRQKADMFSESQR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPXXXXXXXXXXXXXX ITLDPEDPAAVKQYANVM(1)K ITLDPEDPAAVKQYANVM(71)K 18 3 -0.10976 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 190100000 190100000 0 0 NaN 2528900 4740600 6890600 6843500 0 0 39719000 34060000 31971000 7391600 12078000 17831000 12178000 6281000 7588700 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 2528900 0 0 4740600 0 0 6890600 0 0 6843500 0 0 0 0 0 0 0 0 39719000 0 0 34060000 0 0 31971000 0 0 7391600 0 0 12078000 0 0 17831000 0 0 12178000 0 0 6281000 0 0 7588700 0 0 6 44 87 87 238 246 2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879 1425;1426 2868 1426 22-052-Murphy-SHP20-PEI-LL-3 29317 2868 1426 22-052-Murphy-SHP20-PEI-LL-3 29317 2868 1426 22-052-Murphy-SHP20-PEI-LL-3 29317 F4IVZ7;P10896 388;388 F4IVZ7 F4IVZ7 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic RCA tr|F4IVZ7|F4IVZ7_ARATH Rubisco activase OS=Arabidopsis thaliana OX=3702 GN=RCA PE=1 SV=1;sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RCA PE=1 SV=2 1 51.9267 0.000135014 51.927 42.494 51.927 1 51.9267 0.000135014 51.927 0 0 NaN 0 0 NaN 1 M LVNSREGPPVFEQPEMTYEKLMEYGNMLVME X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPPXXXXXXXXXXX EGPPVFEQPEM(1)TYEK EGPPVFEQPEM(52)TYEK 11 2 1.4446 By MS/MS By matching By MS/MS 21484000 21484000 0 0 NaN 0 0 0 0 0 0 10347000 5316300 5820100 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10347000 0 0 5316300 0 0 5820100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 47 388 388 143 148 1796;1797;1798 996 1796 996 22-052-Murphy-SHP20-PEI-LL-1 26519 1796 996 22-052-Murphy-SHP20-PEI-LL-1 26519 1796 996 22-052-Murphy-SHP20-PEI-LL-1 26519 O49006 457 O49006 O49006 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3 PME3 sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=PME3 PE=1 SV=2 1 56.2147 2.69185E-09 56.215 47.214 56.215 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 56.2147 2.69185E-09 56.215 0 0 NaN 1 M DCDIHARRPNSGQKNMVTAQGRTDPNQNTGI X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP NM(1)VTAQGRTDPNQNTGIVIQK NM(56)VTAQGRTDPNQNTGIVIQK 2 3 -0.15838 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 67197000 67197000 0 0 4.7264 1126400 1758200 0 6498400 3870900 5106600 6965800 7317700 0 5786400 0 25171000 0 0 3595900 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 1.7704 NaN NaN NaN 1126400 0 0 1758200 0 0 0 0 0 6498400 0 0 3870900 0 0 5106600 0 0 6965800 0 0 7317700 0 0 0 0 0 5786400 0 0 0 0 0 25171000 0 0 0 0 0 0 0 0 3595900 0 0 8 71 457 457 306 316 3642;3643;3644;3645;3646;3647;3648;3649;3650;3651 1801 3642 1801 22-052-Murphy-SHP20infil-3 18570 3642 1801 22-052-Murphy-SHP20infil-3 18570 3642 1801 22-052-Murphy-SHP20infil-3 18570 O80929 53 O80929 O80929 60S ribosomal protein L36-1 RPL36A sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1 1 71.3424 1.92604E-05 71.342 52.612 71.342 0 0 NaN 1 71.3424 1.92604E-05 71.342 0 0 NaN 0 0 NaN 1 M KRTIFIRKLIREVAGMAPYEKRITELLKVGK X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPXXXXXXXXXX EVAGM(1)APYEK EVAGM(71)APYEK 5 2 0.071986 By matching By MS/MS By matching By matching 29702000 29702000 0 0 NaN 0 0 0 0 2863000 0 11692000 8652800 6493400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 2863000 0 0 0 0 0 11692000 0 0 8652800 0 0 6493400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 77 53 53 156 161 1980;1981;1982;1983 1072 1980 1072 22-052-Murphy-SHP20-PEI-LL-1 3310 1980 1072 22-052-Murphy-SHP20-PEI-LL-1 3310 1980 1072 22-052-Murphy-SHP20-PEI-LL-1 3310 O80929 113 O80929 O80929 60S ribosomal protein L36-1 RPL36A sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1 1 79.474 7.57476E-08 79.474 56.432 79.474 1 79.474 7.57476E-08 79.474 0 0 NaN 1 M RKMRSLGGAAAAEKKM_______________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXPPPPPPPPPPPPXXXXXXXXXXXXXXX SLGGAAAAEKKM(1) SLGGAAAAEKKM(79) 12 2 1.8067 By MS/MS By matching 7734200 7734200 0 0 NaN 0 0 0 0 0 0 7422800 0 0 0 0 0 0 311350 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7422800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311350 0 0 0 0 0 10 77 113 113 361 372 4424;4425 2277 4424 2277 22-052-Murphy-SHP20-PEI-LL-1 2483 4424 2277 22-052-Murphy-SHP20-PEI-LL-1 2483 4424 2277 22-052-Murphy-SHP20-PEI-LL-1 2483 P19366 214 P19366 P19366 ATP synthase subunit beta, chloroplastic atpB sp|P19366|ATPB_ARATH ATP synthase subunit beta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpB PE=1 SV=2 1 51.3355 3.07412E-05 53.166 33.389 51.335 0 0 NaN 0 0 NaN 0 0 NaN 1 48.7556 0.00292072 48.756 0 0 NaN 0 0 NaN 1 51.3355 0.00229277 51.335 0 0 NaN 0 0 NaN 1 53.1664 3.07412E-05 53.166 2 M FGGVGERTREGNDLYMEMKESGVINEQNLAE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPXXXXXXXXXXXX EGNDLYM(1)EM(1)K EGNDLYM(51)EM(51)K 7 2 0.36153 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 244800000 0 244800000 0 NaN 3365100 5699400 10574000 12917000 0 0 60314000 38083000 37533000 0 12241000 38028000 0 0 26047000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3365100 0 0 5699400 0 0 10574000 0 0 12917000 0 0 0 0 0 0 0 0 60314000 0 0 38083000 0 0 37533000 0 0 0 0 0 12241000 0 0 38028000 0 0 0 0 0 0 0 0 26047000 0 11 86 214 214 139 144 1726;1727;1728;1729;1730;1731;1732;1733;1734;1735 973;974;975;976 1728 976 22-052-Murphy-SHP20-PEI-LL-3 4164 1726 973 22-052-Murphy-SHP20-LL-3 4053 1726 973 22-052-Murphy-SHP20-LL-3 4053 P19366 216 P19366 P19366 ATP synthase subunit beta, chloroplastic atpB sp|P19366|ATPB_ARATH ATP synthase subunit beta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpB PE=1 SV=2 1 51.3355 3.07412E-05 53.166 33.389 51.335 0 0 NaN 0 0 NaN 0 0 NaN 1 48.7556 0.00292072 48.756 0 0 NaN 0 0 NaN 1 51.3355 0.00229277 51.335 0 0 NaN 0 0 NaN 1 53.1664 3.07412E-05 53.166 2 M GVGERTREGNDLYMEMKESGVINEQNLAESK X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXPPPPPPPPPPXXXXXXXXXXXXXX EGNDLYM(1)EM(1)K EGNDLYM(51)EM(51)K 9 2 0.36153 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 244800000 0 244800000 0 NaN 3365100 5699400 10574000 12917000 0 0 60314000 38083000 37533000 0 12241000 38028000 0 0 26047000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 3365100 0 0 5699400 0 0 10574000 0 0 12917000 0 0 0 0 0 0 0 0 60314000 0 0 38083000 0 0 37533000 0 0 0 0 0 12241000 0 0 38028000 0 0 0 0 0 0 0 0 26047000 0 12 86 216 216 139 144 1726;1727;1728;1729;1730;1731;1732;1733;1734;1735 973;974;975;976 1728 976 22-052-Murphy-SHP20-PEI-LL-3 4164 1726 973 22-052-Murphy-SHP20-LL-3 4053 1726 973 22-052-Murphy-SHP20-LL-3 4053 P19366 374 P19366 P19366 ATP synthase subunit beta, chloroplastic atpB sp|P19366|ATPB_ARATH ATP synthase subunit beta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpB PE=1 SV=2 1 63.4884 3.79967E-53 69.01 69.01 63.488 0 0 NaN 1 56.0808 4.68617E-15 56.081 1 49.3404 6.34244E-10 49.34 0 0 NaN 0 0 NaN 0 0 NaN 1 69.0102 1.98713E-21 69.01 0 0 NaN 0 0 NaN 1 58.564 9.8831E-46 58.564 1 41.695 0.00238586 41.695 1 63.4884 3.79967E-53 63.488 0 0 NaN 1 M KGIYPAVDPLDSTSTMLQPRIVGEEHYETAQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX GLAAKGIYPAVDPLDSTSTM(1)LQPR GLAAKGIYPAVDPLDSTSTM(63)LQPR 20 3 -3.4321 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 118790000 118790000 0 0 8.8326 4806200 8564000 12311000 2127300 9665500 581650 10900000 0 0 0 0 0 0 0 0 NaN NaN NaN 1.2135 NaN NaN NaN NaN 0 NaN NaN NaN 0 NaN NaN 4806200 0 0 8564000 0 0 12311000 0 0 2127300 0 0 9665500 0 0 581650 0 0 10900000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 86 374 374 183;184 189;190 2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310 1187;1188;1189;1190;1191;1192 2305 1192 22-052-Murphy-SHP20-LL-1 38143 2288 1188 22-052-Murphy-SHP20-PEI-LL-1 40426 2305 1192 22-052-Murphy-SHP20-LL-1 38143 P19366 239 P19366 P19366 ATP synthase subunit beta, chloroplastic atpB sp|P19366|ATPB_ARATH ATP synthase subunit beta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpB PE=1 SV=2 1 85.7306 2.28917E-36 95.502 64.938 85.731 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 73.2332 4.69274E-14 73.233 1 78.9342 5.56007E-21 78.934 1 85.7306 8.68023E-25 85.731 0 0 NaN 1 56.5631 0.00423635 56.563 1 95.5016 2.28917E-36 95.502 1 61.3976 5.61043E-10 61.398 0 0 NaN 1 90.6291 1.37741E-35 90.629 1 M EQNLAESKVALVYGQMNEPPGARMRVGLTAL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPPPXXXXXXXX VALVYGQM(1)NEPPGAR VALVYGQM(86)NEPPGAR 8 2 0.76128 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 151480000 151480000 0 0 6.5476 2329800 3921500 4330200 0 5655500 4534600 17934000 17206000 16929000 6901900 8261400 25336000 15192000 6267400 16682000 NaN 3.3335 NaN NaN NaN NaN NaN NaN 5.5195 NaN NaN 1.8287 3.0161 NaN NaN 2329800 0 0 3921500 0 0 4330200 0 0 0 0 0 5655500 0 0 4534600 0 0 17934000 0 0 17206000 0 0 16929000 0 0 6901900 0 0 8261400 0 0 25336000 0 0 15192000 0 0 6267400 0 0 16682000 0 0 14 86 239 239 425 438 5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279 2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726 5272 2726 22-052-Murphy-SHP20-PEI-LL-3 20453 5267 2717 22-052-Murphy-SHP20infil-3 25395 5267 2717 22-052-Murphy-SHP20infil-3 25395 P25857 131 P25857 P25857 Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic GAPB sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAPB PE=1 SV=2 1 72.1384 0.0237737 72.138 47.14 72.138 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 72.1384 0.0237737 72.138 1 M SGGVKNASHLLKYDSMLGTFKAEVKIVDNET X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPXXXXXXXXXX YDSM(1)LGTFK YDSM(72)LGTFK 4 2 0.57947 By MS/MS By matching By matching By matching By MS/MS 25648000 25648000 0 0 NaN 1277000 1175700 0 0 0 0 9945400 4402800 8847400 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 1277000 0 0 1175700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9945400 0 0 4402800 0 0 8847400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 90 131 131 478 492 5843;5844;5845;5846;5847 2997 5843 2997 22-052-Murphy-SHP20-PEI-LL-3 18142 5843 2997 22-052-Murphy-SHP20-PEI-LL-3 18142 5843 2997 22-052-Murphy-SHP20-PEI-LL-3 18142 P27202 59 P27202 P27202 Photosystem II 10 kDa polypeptide, chloroplastic PSBR sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1 1 51.3591 6.16782E-21 71.349 71.349 51.359 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 44.8286 6.16782E-21 71.349 0 0 NaN 1 51.3591 0.00757015 51.359 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 M VKKIKTDKPFGINGSMDLRDGVDASGRKGKG X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPPPXXXXXXXXXXXX TDKPFGINGSM(1)DLR TDKPFGINGSM(51)DLR 11 3 0.5715 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1058300000 1058300000 0 0 31.359 10728000 14263000 30295000 0 0 9486100 306270000 0 178000000 45051000 54946000 63967000 70741000 34758000 78114000 2.5147 2.9569 3.7606 NaN NaN NaN 37.387 0 62.845 NaN NaN NaN NaN NaN NaN 10728000 0 0 14263000 0 0 30295000 0 0 0 0 0 0 0 0 9486100 0 0 306270000 0 0 0 0 0 178000000 0 0 45051000 0 0 54946000 0 0 63967000 0 0 70741000 0 0 34758000 0 0 78114000 0 0 16 91 59 59 381 394 4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686 2368;2369;2370 4666 2370 22-052-Murphy-SHP20-PEI-LL-3 18309 4664 2368 22-052-Murphy-SHP20-PEI-LL-1 18966 4664 2368 22-052-Murphy-SHP20-PEI-LL-1 18966 P34788 105 P34788 P34788 40S ribosomal protein S18 RPS18A sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1 1 67.9926 3.36185E-05 67.993 61.402 67.993 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 66.6213 3.36185E-05 66.621 1 67.9926 3.36185E-05 67.993 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 M YKDGKYSQVVSNALDMKLRDDLERLKKIRNH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXPPPPPPPPPPPPXXXXXXXXXXXXXX YSQVVSNALDM(1)K YSQVVSNALDM(68)K 11 2 0.76817 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 74784000 74784000 0 0 NaN 2242500 1342200 3099600 2363900 1537900 0 14952000 11403000 10164000 2913400 3957500 7656100 6035500 2661800 4455200 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 2242500 0 0 1342200 0 0 3099600 0 0 2363900 0 0 1537900 0 0 0 0 0 14952000 0 0 11403000 0 0 10164000 0 0 2913400 0 0 3957500 0 0 7656100 0 0 6035500 0 0 2661800 0 0 4455200 0 0 17 95 105 105 485 499 5901;5902;5903;5904;5905;5906;5907;5908;5909;5910;5911;5912;5913;5914 3022;3023 5902 3023 22-052-Murphy-SHP20-PEI-LL-2 18754 5902 3023 22-052-Murphy-SHP20-PEI-LL-2 18754 5902 3023 22-052-Murphy-SHP20-PEI-LL-2 18754 Q9SR73;P34789 1;1 Q9SR73 Q9SR73 40S ribosomal protein S28-1;40S ribosomal protein S28-2 RPS28A;RPS28C sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1;sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1 1 64.8267 1.33912E-40 91.202 91.202 64.827 0 0 NaN 0 0 NaN 0.999992 50.8065 0.000936823 51.875 0.999992 51.2109 0.000936823 51.211 0 0 NaN 1 74.7805 1.3404E-21 74.78 1 91.202 1.33912E-40 91.202 1 64.8267 2.63953E-14 64.827 0 0 NaN 0.999994 51.8748 0.000936823 51.875 0 0 NaN 1;2 M _______________MDSQIKHAVVVKVMGR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)DSQIKHAVVVKVM(1)GR M(65)DSQIKHAVVVKVM(65)GR 1 3 -0.86149 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 378440000 166980000 211460000 0 15.131 9402100 1400000 6276900 7499300 0 0 90498000 88766000 67470000 11073000 0 32556000 0 0 8067400 1.2171 0.69346 2.3915 4.1739 NaN NaN 27.323 17.942 26.083 NaN NaN NaN NaN NaN NaN 3696200 5705800 0 1400000 0 0 6276900 0 0 7499300 0 0 0 0 0 0 0 0 25680000 64818000 0 28383000 60383000 0 17494000 49977000 0 4111900 6961300 0 0 0 0 14701000 17854000 0 0 0 0 0 0 0 2302600 5764900 0 18 96 1 1 294 303;304 3524;3525;3526;3527;3528;3529;3530;3531;3532;3533;3534;3535;3536;3537;3538;3539;3540;3541;3542;3543;3544;3545;3546;3547;3548;3549 1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775 3545 1775 22-052-Murphy-SHP20-PEI-LL-3 14868 3544 1773 22-052-Murphy-SHP20-PEI-LL-2 14314 3544 1773 22-052-Murphy-SHP20-PEI-LL-2 14314 Q9SR73;P34789 14;14 Q9SR73 Q9SR73 40S ribosomal protein S28-1;40S ribosomal protein S28-2 RPS28A;RPS28C sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1;sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1 1 64.8267 1.33912E-40 91.202 91.202 64.827 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 74.7805 1.3404E-21 74.78 1 91.202 1.33912E-40 91.202 1 64.8267 1.45859E-10 64.827 0 0 NaN 0 0 NaN 0 0 NaN 2 M __MDSQIKHAVVVKVMGRTGSRGQVTQVRVK X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPPXXXXXXXXXXXXX M(1)DSQIKHAVVVKVM(1)GR M(65)DSQIKHAVVVKVM(65)GR 14 3 -0.86149 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 211460000 0 211460000 0 8.4547 5705800 0 0 0 0 0 64818000 60383000 49977000 6961300 0 17854000 0 0 5764900 0.73863 0 0 0 NaN NaN 19.569 12.205 19.32 NaN NaN NaN NaN NaN NaN 0 5705800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64818000 0 0 60383000 0 0 49977000 0 0 6961300 0 0 0 0 0 17854000 0 0 0 0 0 0 0 0 5764900 0 19 96 14 14 294 303;304 3543;3544;3545;3546;3547;3548;3549 1771;1772;1773;1774;1775 3545 1775 22-052-Murphy-SHP20-PEI-LL-3 14868 3544 1773 22-052-Murphy-SHP20-PEI-LL-2 14314 3544 1773 22-052-Murphy-SHP20-PEI-LL-2 14314 P49200 8 P49200 P49200 40S ribosomal protein S20-1 RPS20A sp|P49200|RS201_ARATH 40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 1 60.7599 0.00200583 60.76 40.973 60.76 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 44.447 0.00554029 44.447 1 60.7599 0.00200583 60.76 0 0 NaN 0 0 NaN 1 M ________MATAYQPMKPGKAGLEEPLEQIH X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPXXXXXXXXXXX ATAYQPM(1)KPGK ATAYQPM(61)KPGK 7 2 1.3013 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 52865000 52865000 0 0 NaN 1000100 1019900 0 4116600 0 2336600 14987000 10680000 0 0 8810000 9915400 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 1000100 0 0 1019900 0 0 0 0 0 4116600 0 0 0 0 0 2336600 0 0 14987000 0 0 10680000 0 0 0 0 0 0 0 0 8810000 0 0 9915400 0 0 0 0 0 0 0 0 0 0 0 20 105 8 8 80 83 890;891;892;893;894;895;896;897 469;470 891 470 22-052-Murphy-SHP20-PEI-LL-2 4264 891 470 22-052-Murphy-SHP20-PEI-LL-2 4264 891 470 22-052-Murphy-SHP20-PEI-LL-2 4264 P51414 47 P51414 P51414 60S ribosomal protein L26-1 RPL26A sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2 1 47.7121 0.00188511 57.802 57.802 47.712 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 57.8017 0.00188511 57.802 1 47.7121 0.0177454 47.712 0 0 NaN 0 0 NaN 0 0 NaN 1 43.3824 0.0271396 43.382 1 M SPLSTDLRQKYNVRSMPIRKDDEVQIVRGTY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPXXX SM(1)PIRKDDEVQIVR SM(48)PIRKDDEVQIVR 2 3 -0.99958 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 525130000 525130000 0 0 1.4968 5282700 6193000 14635000 8521500 4602900 0 161050000 166960000 128790000 0 6352700 0 6900300 0 15837000 0.82946 0.40494 0.98255 1.1629 2.7416 NaN 2.15 1.8973 2.1955 0 0.4824 0 0.4241 0 0.86343 5282700 0 0 6193000 0 0 14635000 0 0 8521500 0 0 4602900 0 0 0 0 0 161050000 0 0 166960000 0 0 128790000 0 0 0 0 0 6352700 0 0 0 0 0 6900300 0 0 0 0 0 15837000 0 0 21 111 47 47 366 378 4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512 2314;2315;2316 4504 2316 22-052-Murphy-SHP20-PEI-LL-2 3757 4503 2315 22-052-Murphy-SHP20-PEI-LL-1 4137 4503 2315 22-052-Murphy-SHP20-PEI-LL-1 4137 P51418;A0A1P8AY36;A8MRF3;Q8L7K0;Q9LUD4 92;131;226;92;92 P51418;Q9LUD4 P51418 60S ribosomal protein L18a-2;60S ribosomal protein L18a-1;60S ribosomal protein L18a-3 RPL18AB;RPL18AA;RPL18AC sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2;tr|A0A1P8AY36|A0A1P8AY36_ARATH Ribosomal protein L18ae/LX family protein OS=Arabidopsis thaliana OX=3702 GN=At2g34480 PE=1 SV=1;tr|A8MRF3|A8MRF3_ARATH 6 1 51.3458 0.0254187 51.346 44.321 51.346 1 51.3458 0.0254187 51.346 M FGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ;YGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPXXXXXXXXXX TGYHNM(1)YKEYR TGYHNM(51)YKEYR 6 2 -0.19731 By matching 20125000 20125000 0 0 NaN 0 0 0 0 0 0 20125000 0 0 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20125000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 112;192 92;92 92 393 406 4815 2419 4815 2419 22-052-Murphy-SHP20-PEI-LL-1 2673 4815 2419 22-052-Murphy-SHP20-PEI-LL-1 2673 4815 2419 22-052-Murphy-SHP20-PEI-LL-1 2673 Q9FZH0;P51422;Q9LMK0;Q9C912 106;106;107;107 Q9FZH0 Q9FZH0 60S ribosomal protein L35a-2;60S ribosomal protein L35a-4;60S ribosomal protein L35a-1;60S ribosomal protein L35a-3 RPL35AB;RPL35AD;RPL35AA;RPL35AC sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1;sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2;sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a 1 57.4713 6.67645E-16 97.473 91.37 57.471 0 0 NaN 0 0 NaN 1 97.4727 6.67645E-16 97.473 0 0 NaN 0 0 NaN 0 0 NaN 1 90.7062 3.76503E-07 90.706 1 57.4713 0.0295455 57.471 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 M SNLPPKSMGARVRVFMYPSNI__________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPXXXXXXXXXX VRVFM(1)YPSNI VRVFM(57)YPSNI 5 2 -0.055155 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 228960000 228960000 0 0 NaN 4278000 6193000 16240000 9984900 7181100 1918100 82902000 30364000 27534000 5463500 6547100 14361000 5757600 3814100 6424400 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 4278000 0 0 6193000 0 0 16240000 0 0 9984900 0 0 7181100 0 0 1918100 0 0 82902000 0 0 30364000 0 0 27534000 0 0 5463500 0 0 6547100 0 0 14361000 0 0 5757600 0 0 3814100 0 0 6424400 0 0 23 113 106 106 466 480 5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757 2952;2953;2954 5745 2954 22-052-Murphy-SHP20-PEI-LL-2 30552 5743 2952 22-052-Murphy-control-3 25086 5743 2952 22-052-Murphy-control-3 25086 P56793 125 P56793 P56793 50S ribosomal protein L16, chloroplastic rpl16 sp|P56793|RK16_ARATH 50S ribosomal protein L16, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl16 PE=3 SV=1 1 50.878 0.000348299 50.878 39.285 50.878 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 50.878 0.000348299 50.878 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN M PENIARKAISIAASKMPIKTQFIISE_____ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPXXXXX M(1)PIKTQFIISE M(51)PIKTQFIISE 1 2 0.35374 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 75112000 75112000 0 0 NaN 1349900 1635000 3355600 0 0 0 25921000 13240000 9862700 2604100 4378600 0 4594600 3535100 4636100 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 1349900 0 0 1635000 0 0 3355600 0 0 0 0 0 0 0 0 0 0 0 25921000 0 0 13240000 0 0 9862700 0 0 2604100 0 0 4378600 0 0 0 0 0 4594600 0 0 3535100 0 0 4636100 0 0 24 124 125 125 300 310 3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615 1795 3605 1795 22-052-Murphy-SHP20-PEI-LL-3 29040 3605 1795 22-052-Murphy-SHP20-PEI-LL-3 29040 3605 1795 22-052-Murphy-SHP20-PEI-LL-3 29040 P59230;Q8VZB9 209;209 P59230 P59230 60S ribosomal protein L10a-2;60S ribosomal protein L10a-1 RPL10AB;RPL10AA sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1;sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1 1 52.6831 0.00650908 65.672 61.535 52.683 1 65.672 0.00650908 65.672 0 0 NaN 1 52.6831 0.0297631 52.683 1 M KKNWQNVRCLYLKSTMGPPQRIF________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXPPPPPPPPPPXXXXXXXX STM(1)GPPQRIF STM(53)GPPQRIF 3 2 -0.60691 By MS/MS By MS/MS By MS/MS 110150000 110150000 0 0 NaN 0 0 0 0 0 0 46655000 34741000 28755000 0 0 0 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46655000 0 0 34741000 0 0 28755000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 128 209 209 376 388 4628;4629;4630 2356;2357 4629 2357 22-052-Murphy-SHP20-PEI-LL-3 19430 4628 2356 22-052-Murphy-SHP20-PEI-LL-1 19757 4628 2356 22-052-Murphy-SHP20-PEI-LL-1 19757 P61845 1 P61845 P61845 50S ribosomal protein L23, chloroplastic rpl23-A sp|P61845|RK23_ARATH 50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl23-A PE=3 SV=1 1 98.0331 1.01681E-31 128.38 126.34 98.033 1 48.0038 0.0103645 48.004 1 53.2112 0.00766805 58.981 1 57.0193 0.000185099 57.019 1 53.2374 0.00323191 53.237 1 45.0775 2.74295E-23 117.89 1 128.383 1.01681E-31 128.38 1 98.0331 4.3021E-24 98.033 1 47.2879 0.0103645 47.288 1 62.4662 0.000747454 62.466 1 43.6348 0.0103645 46.592 1 46.5921 0.0103645 46.592 0 0 NaN 1 58.4333 0.00189835 58.433 1 M _______________MDGIKYAVFTDKSIRL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPXXXX M(1)DGIKYAVFTDK M(98)DGIKYAVFTDK 1 2 -0.748 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 433540000 433540000 0 0 NaN 7400800 8490600 19929000 11183000 0 0 85142000 55375000 46926000 7739000 11750000 19124000 16237000 6133600 24560000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 7400800 0 0 8490600 0 0 19929000 0 0 11183000 0 0 0 0 0 0 0 0 85142000 0 0 55375000 0 0 46926000 0 0 7739000 0 0 11750000 0 0 19124000 0 0 16237000 0 0 6133600 0 0 24560000 0 0 26 131 1 1 293 301 3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510;3511;3512;3513;3514;3515 1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759 3510 1759 22-052-Murphy-SHP20-PEI-LL-3 21021 3508 1757 22-052-Murphy-SHP20-PEI-LL-2 21147 3508 1757 22-052-Murphy-SHP20-PEI-LL-2 21147 P62090 77 P62090 P62090 Photosystem I iron-sulfur center psaC sp|P62090|PSAC_ARATH Photosystem I iron-sulfur center OS=Arabidopsis thaliana OX=3702 GN=psaC PE=3 SV=2 1 86.6271 0.0181227 86.627 86.627 86.627 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 86.6271 0.0181227 86.627 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN M FLSVRVYLWHETTRSMGLAY___________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPXXXXXXXXXXX SM(1)GLAY SM(87)GLAY 2 1 0.94756 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 390030000 390030000 0 0 NaN 4943900 6186800 11349000 34798000 24900000 8006200 56914000 35555000 31223000 13601000 25342000 74503000 23382000 5662200 33658000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 4943900 0 0 6186800 0 0 11349000 0 0 34798000 0 0 24900000 0 0 8006200 0 0 56914000 0 0 35555000 0 0 31223000 0 0 13601000 0 0 25342000 0 0 74503000 0 0 23382000 0 0 5662200 0 0 33658000 0 0 27 133 77 77 365 376 4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475 2308 4461 2308 22-052-Murphy-SHP20-PEI-LL-2 16315 4461 2308 22-052-Murphy-SHP20-PEI-LL-2 16315 4461 2308 22-052-Murphy-SHP20-PEI-LL-2 16315 P93014 232 P93014 P93014 30S ribosomal protein S5, chloroplastic rps5 sp|P93014|RR5_ARATH 30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1 1 79.8103 2.49837E-45 89.624 79.703 79.81 0 0 NaN 0 0 NaN 1 53.8285 1.35894E-05 53.828 1 89.6238 2.49837E-45 89.624 1 79.8103 1.02697E-39 79.81 1 51.6953 1.1383E-05 51.695 1 88.5614 3.91501E-45 88.561 0 0 NaN 1 M TFPHRSEGDYGAAKVMLRPASPGTGVIAGGA X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPPP VM(1)LRPASPGTGVIAGGAVR VM(80)LRPASPGTGVIAGGAVR 2 3 1.0351 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 68603000 68603000 0 0 NaN 1820000 0 0 0 4508500 0 12005000 14133000 11193000 6052200 0 17105000 0 1786500 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 1820000 0 0 0 0 0 0 0 0 0 0 0 4508500 0 0 0 0 0 12005000 0 0 14133000 0 0 11193000 0 0 6052200 0 0 0 0 0 17105000 0 0 0 0 0 1786500 0 0 0 0 0 28 137 232 232 460 474 5685;5686;5687;5688;5689;5690;5691;5692 2924;2925;2926;2927;2928 5689 2928 22-052-Murphy-SHP20-PEI-LL-3 20614 5688 2927 22-052-Murphy-SHP20-PEI-LL-2 20682 5688 2927 22-052-Murphy-SHP20-PEI-LL-2 20682 Q38842 65 Q38842 Q38842 ATOZI1 tr|Q38842|Q38842_ARATH AT0ZI1 protein OS=Arabidopsis thaliana OX=3702 GN=ATOZI1 PE=1 SV=1 1 74.9199 1.00749E-13 74.92 54.05 74.92 1 74.9199 1.00749E-13 74.92 M ERLQAWPRVAGPPVVMNPISRQNFIVKSRPE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXPPPPPPPPPPPPPXXXXXXXXXX VAGPPVVM(1)NPISR VAGPPVVM(75)NPISR 8 2 0.59637 By matching 6889200 6889200 0 0 NaN 0 0 0 0 0 0 0 0 0 0 0 6889200 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6889200 0 0 0 0 0 0 0 0 0 0 0 29 143 65 65 422 435 5242 2708 5242 2708 22-052-Murphy-SHP20infil-3 28193 5242 2708 22-052-Murphy-SHP20infil-3 28193 5242 2708 22-052-Murphy-SHP20infil-3 28193 Q38865 251 Q38865 Q38865 Expansin-A6 EXPA6 sp|Q38865|EXPA6_ARATH Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2 1 54.066 0.00472777 58.246 40.11 54.066 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 52.5786 0.00860093 52.579 1 58.2462 0.00522533 58.246 1 54.066 0.00472777 54.066 0 0 NaN 0 0 NaN 1 42.7433 0.0133899 42.743 0 0 NaN 0 0 NaN 1 52.2783 0.00550811 52.278 1 M SWNIAPANWKFGQTFMGKNFRV_________ X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPXXXXXXXXX FGQTFM(1)GKNFRV FGQTFM(54)GKNFRV 6 3 0.73228 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 177370000 177370000 0 0 38.62 4304500 4688100 9102900 8879700 8745700 2171500 21567000 13985000 14148000 5111400 6154100 15386000 5315900 2569300 7265700 NaN 2.7563 5.4197 NaN NaN NaN NaN NaN 11.671 NaN NaN NaN NaN NaN NaN 4304500 0 0 4688100 0 0 9102900 0 0 8879700 0 0 8745700 0 0 2171500 0 0 21567000 0 0 13985000 0 0 14148000 0 0 5111400 0 0 6154100 0 0 15386000 0 0 5315900 0 0 2569300 0 0 7265700 0 0 30 144 251 251 164 170 2037;2038;2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049;2050;2051;2052;2053;2054;2055;2056 1090;1091;1092;1093;1094;1095 2042 1095 22-052-Murphy-SHP20-PEI-LL-3 21382 2041 1094 22-052-Murphy-SHP20-PEI-LL-2 21466 2042 1095 22-052-Murphy-SHP20-PEI-LL-3 21382 Q8RXU5;Q9SRK6 71;71 Q8RXU5 Q8RXU5 60S ribosomal protein L37a-2;Putative 60S ribosomal protein L37a-1 RPL37AC;RPL37AB sp|Q8RXU5|R37A2_ARATH 60S ribosomal protein L37a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37AC PE=3 SV=1;sp|Q9SRK6|R37A1_ARATH Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1 1 90.1082 2.22426E-33 96.143 81.171 90.108 1 63.2832 6.4106E-07 63.283 1 96.1429 2.22426E-33 96.143 1 84.17 4.63391E-29 84.17 1 90.1082 2.40485E-30 90.108 0 0 NaN 0 0 NaN 1 M GCKDCGKVKAGGAYTMNTASAVTVRSTIRRL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXPPPPPPPPPPPPPPPPXXXXXX AGGAYTM(1)NTASAVTVR AGGAYTM(90)NTASAVTVR 7 2 -0.51242 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 49250000 49250000 0 0 NaN 0 0 0 5328100 0 0 15498000 11958000 8254000 1610900 0 6601300 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 5328100 0 0 0 0 0 0 0 0 15498000 0 0 11958000 0 0 8254000 0 0 1610900 0 0 0 0 0 6601300 0 0 0 0 0 0 0 0 0 0 0 31 162 71 71 32 32 400;401;402;403;404;405 197;198;199;200 403 200 22-052-Murphy-SHP20-PEI-LL-3 13929 401 198 22-052-Murphy-SHP20-PEI-LL-1 14502 401 198 22-052-Murphy-SHP20-PEI-LL-1 14502 Q8RXX5 119 Q8RXX5 Q8RXX5 50S ribosomal protein L19-2, chloroplastic sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1 1 70.2558 4.20787E-07 70.256 67.218 70.256 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 70.2558 4.20787E-07 70.256 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 M EAKPPWKTRVKLGDIMGLLNKKAIEVAETVR X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXPPPPPPPPPPPXXXXXXXXX LGDIM(1)GLLNKK LGDIM(70)GLLNKK 5 3 0.046178 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 40614000 40614000 0 0 NaN 0 1920300 3030200 2990900 2507400 0 8992600 0 7395800 0 0 0 5664500 2206000 5906500 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 1920300 0 0 3030200 0 0 2990900 0 0 2507400 0 0 0 0 0 8992600 0 0 0 0 0 7395800 0 0 0 0 0 0 0 0 0 0 0 5664500 0 0 2206000 0 0 5906500 0 0 32 163 119 119 270 278 3222;3223;3224;3225;3226;3227;3228;3229;3230 1614 3222 1614 22-052-Murphy-SHP20-PEI-LL-1 23047 3222 1614 22-052-Murphy-SHP20-PEI-LL-1 23047 3222 1614 22-052-Murphy-SHP20-PEI-LL-1 23047 Q9C891 146 Q9C891 Q9C891 Dirigent protein 20 DIR20 sp|Q9C891|DIR20_ARATH Dirigent protein 20 OS=Arabidopsis thaliana OX=3702 GN=DIR20 PE=2 SV=1 1 41.0916 2.69653E-07 60.628 9.4172 41.092 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 60.6282 2.69653E-07 60.628 1 41.6438 0.00824039 41.644 1 41.0916 0.0165468 41.092 0 0 NaN 1 41.0916 0.0165468 41.092 1 M ITILGRNTALSEVREMPIVGGSGLFRFARGY X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXPPPPPPPPPPPPPPPXX EM(1)PIVGGSGLFRFAR EM(41)PIVGGSGLFRFAR 2 3 0.05277 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 100580000 100580000 0 0 NaN 3069400 4041000 7096500 7809000 5096200 3076800 18553000 16708000 8809000 5319800 0 20998000 0 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 3069400 0 0 4041000 0 0 7096500 0 0 7809000 0 0 5096200 0 0 3076800 0 0 18553000 0 0 16708000 0 0 8809000 0 0 5319800 0 0 0 0 0 20998000 0 0 0 0 0 0 0 0 0 0 0 33 173 146 146 151 156 1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915 1044;1045;1046;1047 1908 1047 22-052-Murphy-SHP20-PEI-LL-3 33835 1906 1045 22-052-Murphy-SHP20-PEI-LL-1 34693 1906 1045 22-052-Murphy-SHP20-PEI-LL-1 34693 Q9C9H9 725 Q9C9H9 Q9C9H9 Pentatricopeptide repeat-containing protein At1g71420 PCMP-H70 sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H70 PE=2 SV=1 1 50.9659 0.0293273 50.966 12.174 50.966 0 0 NaN 0 0 NaN 1 50.9659 0.0293273 50.966 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN M NFMKLASKLLGKEILMRDSNRFHHFKDSSCS X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXPPPPPPPPPXXXXXXXXXX EILM(1)RDSNR EILM(51)RDSNR 4 2 0.76715 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 71207000 71207000 0 0 NaN 4796600 6135700 12008000 0 0 0 17634000 14713000 14007000 0 0 0 1912500 0 0 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 4796600 0 0 6135700 0 0 12008000 0 0 0 0 0 0 0 0 0 0 0 17634000 0 0 14713000 0 0 14007000 0 0 0 0 0 0 0 0 0 0 0 1912500 0 0 0 0 0 0 0 0 34 174 725 725 146 151 1825;1826;1827;1828;1829;1830;1831 1005 1825 1005 22-052-Murphy-control-3 9680 1825 1005 22-052-Murphy-control-3 9680 1825 1005 22-052-Murphy-control-3 9680 Q9S7H1;Q9SA56 186;182 Q9S7H1;Q9SA56 Q9S7H1 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic psaD1;PSAD2 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=psaD1 PE=1 SV=1;sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 1 63.6908 1.41841E-32 72.038 60.887 63.691 1 55.5888 5.83434E-09 55.589 0 0 NaN 0 0 NaN 0 0 NaN 1 48.314 2.48978E-05 48.314 0 0 NaN 1 63.6908 1.62477E-14 63.691 1 41.3476 2.69976E-09 61.679 1 46.543 7.51238E-06 46.543 0 0 NaN 1 44.9984 1.41841E-32 44.998 1 72.0383 1.2978E-08 72.038 1 48.0531 7.70339E-09 48.053 0 0 NaN 1 49.9933 7.70339E-09 49.993 1 M YPEKANPGREGVGLNMRSIGKNVSPIEVKFT X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPPPPPPPPPPXX EGVGLNM(1)RSIGKNVSPIEVK EGVGLNM(64)RSIGKNVSPIEVK 7 3 0.069912 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3064200000 3064200000 0 0 3.0799 4504300 0 0 13915000 15592000 6506100 65399000 30369000 37441000 29081000 39552000 68257000 18948000 9052600 16008000 0.096665 0 0 0.85219 0.81991 0.42028 0.7346 0.30009 0.39334 1.6127 0.76305 0.22705 0.23236 0.39834 0.52399 4504300 0 0 0 0 0 0 0 0 13915000 0 0 15592000 0 0 6506100 0 0 65399000 0 0 30369000 0 0 37441000 0 0 29081000 0 0 39552000 0 0 68257000 0 0 18948000 0 0 9052600 0 0 16008000 0 0 35 202;207 186;182 186 53;108;145 56;111;150 613;614;615;616;617;618;619;620;621;622;623;624;625;1279;1280;1281;1282;1283;1284;1285;1286;1813;1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824 297;298;299;719;720;721;722;723;724;1001;1002;1003;1004 1816 1004 22-052-Murphy-SHP20-PEI-LL-1 21205 613 297 22-052-Murphy-SHP20infil-3 3923 1813 1001 22-052-Murphy-SHP20infil-2 22977 Q9S7H1;Q9SA56 112;108 Q9S7H1;Q9SA56 Q9S7H1 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic psaD1;PSAD2 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=psaD1 PE=1 SV=1;sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 1 90.9056 3.52196E-21 90.906 83.019 90.906 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 90.9056 3.52196E-21 90.906 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 2 M FYVITWNSPKEQIFEMPTGGAAIMREGPNLL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X XXXXXXXXXXPPPPPPPPPPPPPPPXXXXXX EQIFEM(1)PTGGAAIM(1)R EQIFEM(91)PTGGAAIM(91)R 6 2 1.1422 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 96196000 0 96196000 0 NaN 2025200 4110900 3713700 11147000 6038900 0 24208000 15096000 16974000 0 5965400 0 0 1957100 4959600 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 2025200 0 0 4110900 0 0 3713700 0 0 11147000 0 0 6038900 0 0 0 0 0 24208000 0 0 15096000 0 0 16974000 0 0 0 0 0 5965400 0 0 0 0 0 0 0 0 1957100 0 0 4959600 0 36 202;207 112;108 112 153 158 1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949 1059 1939 1059 22-052-Murphy-SHP20-PEI-LL-1 26133 1939 1059 22-052-Murphy-SHP20-PEI-LL-1 26133 1939 1059 22-052-Murphy-SHP20-PEI-LL-1 26133 Q9S7H1;Q9SA56 120;116 Q9S7H1;Q9SA56 Q9S7H1 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic psaD1;PSAD2 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=psaD1 PE=1 SV=1;sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 1 90.9056 3.52196E-21 90.906 83.019 90.906 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 90.9056 3.52196E-21 90.906 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 2 M PKEQIFEMPTGGAAIMREGPNLLKLARKEQC X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXPPPPPPPPPPPPPPPXXXXXXXXXXXXXX EQIFEM(1)PTGGAAIM(1)R EQIFEM(91)PTGGAAIM(91)R 14 2 1.1422 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 96196000 0 96196000 0 NaN 2025200 4110900 3713700 11147000 6038900 0 24208000 15096000 16974000 0 5965400 0 0 1957100 4959600 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 2025200 0 0 4110900 0 0 3713700 0 0 11147000 0 0 6038900 0 0 0 0 0 24208000 0 0 15096000 0 0 16974000 0 0 0 0 0 5965400 0 0 0 0 0 0 0 0 1957100 0 0 4959600 0 37 202;207 120;116 120 153 158 1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949 1059 1939 1059 22-052-Murphy-SHP20-PEI-LL-1 26133 1939 1059 22-052-Murphy-SHP20-PEI-LL-1 26133 1939 1059 22-052-Murphy-SHP20-PEI-LL-1 26133 Q9SKC9 1 Q9SKC9 Q9SKC9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 sp|Q9SKC9|NDUB7_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=At2g02050 PE=1 SV=1 1 52.8138 2.05808E-08 52.814 48.375 52.814 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 52.8138 2.05808E-08 52.814 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 3 M _______________MEVPGSSKKMIATQEE X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPP M(1)EVPGSSKKM(1)IATQEEM(1)SAAK M(53)EVPGSSKKM(53)IATQEEM(53)SAAK 1 3 0.39887 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 160330000 0 0 160330000 NaN 4319900 3780600 0 13040000 9755900 2913000 0 0 55319000 0 10991000 15421000 18548000 0 26244000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 4319900 0 0 3780600 0 0 0 0 0 13040000 0 0 9755900 0 0 2913000 0 0 0 0 0 0 0 0 55319000 0 0 0 0 0 10991000 0 0 15421000 0 0 18548000 0 0 0 0 0 26244000 38 214 1 1 297 307 3577;3578;3579;3580;3581;3582;3583;3584;3585;3586 1790 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 Q9SKC9 10 Q9SKC9 Q9SKC9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 sp|Q9SKC9|NDUB7_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=At2g02050 PE=1 SV=1 1 52.8138 2.05808E-08 52.814 48.375 52.814 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 52.8138 2.05808E-08 52.814 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 3 M ______MEVPGSSKKMIATQEEMSAAKIALG X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X XXXXXXPPPPPPPPPPPPPPPPPPPPPXXXX M(1)EVPGSSKKM(1)IATQEEM(1)SAAK M(53)EVPGSSKKM(53)IATQEEM(53)SAAK 10 3 0.39887 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 160330000 0 0 160330000 NaN 4319900 3780600 0 13040000 9755900 2913000 0 0 55319000 0 10991000 15421000 18548000 0 26244000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 4319900 0 0 3780600 0 0 0 0 0 13040000 0 0 9755900 0 0 2913000 0 0 0 0 0 0 0 0 55319000 0 0 0 0 0 10991000 0 0 15421000 0 0 18548000 0 0 0 0 0 26244000 39 214 10 10 297 307 3577;3578;3579;3580;3581;3582;3583;3584;3585;3586 1790 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 Q9SKC9 17 Q9SKC9 Q9SKC9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 sp|Q9SKC9|NDUB7_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=At2g02050 PE=1 SV=1 1 52.8138 2.05808E-08 52.814 48.375 52.814 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 52.8138 2.05808E-08 52.814 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 3 M EVPGSSKKMIATQEEMSAAKIALGSRDMCAH X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X PPPPPPPPPPPPPPPPPPPPXXXXXXXXXXX M(1)EVPGSSKKM(1)IATQEEM(1)SAAK M(53)EVPGSSKKM(53)IATQEEM(53)SAAK 17 3 0.39887 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 160330000 0 0 160330000 NaN 4319900 3780600 0 13040000 9755900 2913000 0 0 55319000 0 10991000 15421000 18548000 0 26244000 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 4319900 0 0 3780600 0 0 0 0 0 13040000 0 0 9755900 0 0 2913000 0 0 0 0 0 0 0 0 55319000 0 0 0 0 0 10991000 0 0 15421000 0 0 18548000 0 0 0 0 0 26244000 40 214 17 17 297 307 3577;3578;3579;3580;3581;3582;3583;3584;3585;3586 1790 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 3577 1790 22-052-Murphy-SHP20-PEI-LL-3 4324 Q9SMU8;P24101 314;315 Q9SMU8 Q9SMU8 Peroxidase 34;Peroxidase 33 PER34;PER33 sp|Q9SMU8|PER34_ARATH Peroxidase 34 OS=Arabidopsis thaliana OX=3702 GN=PER34 PE=1 SV=1;sp|P24101|PER33_ARATH Peroxidase 33 OS=Arabidopsis thaliana OX=3702 GN=PER33 PE=1 SV=1 1 54.4164 2.80049E-44 103.55 90.757 54.416 0 0 NaN 0 0 NaN 0 0 NaN 0 0 NaN 1 54.4164 0.0125521 54.416 0 0 NaN 0 0 NaN 0 0 NaN 1 103.546 2.80049E-44 103.55 0 0 NaN 1 M GTQTFFNAFVEAMNRMGNITPTTGTQGQIRL X;X;X;X;X;X;X;X;X;X;X;X;X;X;X;Oxidation (M);X;X;X;X;X;X;X;X;X;X;X;X;X;X;X XXXXXXXXXXXXXXXPPPPPPPPPPPPPPPX M(1)GNITPTTGTQGQIR M(54)GNITPTTGTQGQIR 1 2 -0.33644 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 48014000 48014000 0 0 NaN 0 0 0 3510800 3221900 4044000 3867300 6821600 3834100 3218100 4495800 12765000 0 0 2234900 NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN 0 0 0 0 0 0 0 0 0 3510800 0 0 3221900 0 0 4044000 0 0 3867300 0 0 6821600 0 0 3834100 0 0 3218100 0 0 4495800 0 0 12765000 0 0 0 0 0 0 0 0 2234900 0 0 41 218 314 314 298 308 3587;3588;3589;3590;3591;3592;3593;3594;3595;3596 1791;1792 3588 1792 22-052-Murphy-SHP20-PEI-LL-2 11081 3587 1791 22-052-Murphy-SHP20infil-3 16307 3587 1791 22-052-Murphy-SHP20infil-3 16307