Sequence N-term cleavage window C-term cleavage window Amino acid before First amino acid Second amino acid Second last amino acid Last amino acid Amino acid after A Count R Count N Count D Count C Count Q Count E Count G Count H Count I Count L Count K Count M Count F Count P Count S Count T Count W Count Y Count V Count U Count O Count Length Missed cleavages Mass Proteins Leading razor protein Start position End position Gene names Protein names Unique (Groups) Unique (Proteins) Charges PEP Score Identification type Control 1 Identification type Control 2 Identification type Control 3 Identification type PEI Infil 1 Identification type PEI Infil 2 Identification type PEI Infil 3 Identification type PEI LL 1 Identification type PEI LL 2 Identification type PEI LL 3 Identification type SHP20 Infil 1 Identification type SHP20 Infil 2 Identification type SHP20 Infil 3 Identification type SHP20 LL 1 Identification type SHP20 LL 2 Identification type SHP20 LL 3 Experiment Control 1 Experiment Control 2 Experiment Control 3 Experiment PEI Infil 1 Experiment PEI Infil 2 Experiment PEI Infil 3 Experiment PEI LL 1 Experiment PEI LL 2 Experiment PEI LL 3 Experiment SHP20 Infil 1 Experiment SHP20 Infil 2 Experiment SHP20 Infil 3 Experiment SHP20 LL 1 Experiment SHP20 LL 2 Experiment SHP20 LL 3 Intensity Intensity Control 1 Intensity Control 2 Intensity Control 3 Intensity PEI Infil 1 Intensity PEI Infil 2 Intensity PEI Infil 3 Intensity PEI LL 1 Intensity PEI LL 2 Intensity PEI LL 3 Intensity SHP20 Infil 1 Intensity SHP20 Infil 2 Intensity SHP20 Infil 3 Intensity SHP20 LL 1 Intensity SHP20 LL 2 Intensity SHP20 LL 3 Reverse Potential contaminant id Protein group IDs Mod. peptide IDs Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs Taxonomy IDs MS/MS Count LFQ intensity Control 1 LFQ intensity Control 2 LFQ intensity Control 3 LFQ intensity PEI Infil 1 LFQ intensity PEI Infil 2 LFQ intensity PEI Infil 3 LFQ intensity PEI LL 1 LFQ intensity PEI LL 2 LFQ intensity PEI LL 3 LFQ intensity SHP20 Infil 1 LFQ intensity SHP20 Infil 2 LFQ intensity SHP20 Infil 3 LFQ intensity SHP20 LL 1 LFQ intensity SHP20 LL 2 LFQ intensity SHP20 LL 3 AAAAGFEKGIDR FFLFVGHLWHAGRARAAAAGFEKGIDRDFE RARAAAAGFEKGIDRDFEPVLSMTPLN___ R A A D R D 4 1 0 1 0 0 1 2 0 1 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1204.62 P56778 P56778 450 461 psbC Photosystem II CP43 reaction center protein yes yes 2;3 3.2757E-06 73.665 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 121710000 768080 1216000 692390 6255400 4161200 2480200 21791000 27747000 21246000 0 6725200 19126000 0 0 9502400 0 121 0 0;1;2;3;4;5;6;7;8;9;10;11;12;13;14 0;1;2;3;4;5 0 6 768080 1148200 446880 3056900 2566700 2436800 3534200 5566600 4878600 0 2268100 3158500 0 0 4079800 AAALNIVPTSTGAAK QRLLDASHRDLRRARAAALNIVPTSTGAAK AAALNIVPTSTGAAKAVSLVLPQLKGKLNG R A A A K A 5 0 1 0 0 0 0 1 0 1 1 1 0 0 1 1 2 0 0 1 0 0 15 0 1383.7722 P25857 P25857 283 297 GAPB Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic no no 2 1.2923E-29 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 131130000 8536600 9896300 8026500 16574000 0 0 36115000 0 31077000 0 0 0 0 0 20907000 1 90 1 15;16;17;18;19;20;21;22;23 6;7;8;9;10;11 10 5 8536600 9344500 5180400 8099400 0 0 5857500 0 7136200 0 0 0 0 0 8976100 AAEDPAPASSSSK SFLPMRNAGSRLVVRAAEDPAPASSSSKDS VRAAEDPAPASSSSKDSPAAAAAPDGATAT R A A S K D 4 0 0 1 0 0 1 0 0 0 0 1 0 0 2 4 0 0 0 0 0 0 13 0 1216.5572 Q9S831 Q9S831 45 57 PSAE1 Photosystem I reaction center subunit IV A, chloroplastic yes yes 2 2.0542E-41 120.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1 1 2 1 1 1 4 209410000 6724500 6105000 10739000 20137000 18187000 0 57660000 0 0 0 26296000 36970000 26595000 0 0 2 205 2 24;25;26;27;28;29;30;31;32;33;34;35;36;37;38;39;40;41 12;13;14;15;16;17;18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33;34;35 27 24 6724500 5764600 6931000 9840800 11218000 0 9351900 0 0 0 8868500 6105300 9750500 0 0 AAEDTPPATASSDSSSTTAAAAPAKVPAAK SFLPMRSFGSRLVVRAAEDTPPATASSDSS STTAAAAPAKVPAAKAKPPPIGPKRGSKVK R A A A K A 11 0 0 2 0 0 1 0 0 0 0 2 0 0 4 5 4 0 0 1 0 0 30 1 2741.3355 Q9S714 Q9S714 47 76 PSAE2 Photosystem I reaction center subunit IV B, chloroplastic yes yes 3;4 2.5669E-95 77.641 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3627300000 0 5159300 105630000 187870000 169610000 89860000 442320000 356680000 386240000 197430000 312800000 770580000 245320000 97753000 260070000 3 201 3 42;43;44;45;46;47;48;49;50;51;52;53;54;55;56;57;58;59;60;61;62;63;64;65;66;67;68 36;37;38;39;40;41;42;43;44;45;46;47;48;49;50;51;52;53;54;55;56;57;58;59;60;61;62;63;64 57 29 0 4871700 68177000 91810000 104610000 88289000 71740000 71557000 88691000 100200000 105500000 127260000 89940000 92323000 111660000 AAENVFIKKMEQEK SRRFSSGKVLSEEERAAENVFIKKMEQEKL RAAENVFIKKMEQEKLQKLARQGPGEQAAG R A A E K L 2 0 1 0 0 1 3 0 0 1 0 3 1 1 0 0 0 0 0 1 0 0 14 2 1663.8603 Q9ZUX4 Q9ZUX4 26 39 Uncharacterized protein At2g27730, mitochondrial yes yes 3 0.019145 49.423 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 18962000 3729100 2671300 5155100 1870900 0 0 0 5535300 0 0 0 0 0 0 0 4 235 4 69;70;71;72;73 65 65 1 3729100 2522300 3327200 914290 0 0 0 1110500 0 0 0 0 0 0 0 AAFPNLNSDAGLK ______________________________ ______________________________ M A A L K K 3 0 2 1 0 0 0 1 0 0 2 1 0 1 1 1 0 0 0 0 0 0 13 0 1316.6725 A8MRC4;P48006 A8MRC4 2 14 At1g30230 Elongation factor 1-delta 1 yes no 2 1.7121E-14 79.906 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 231010000 3997900 2828900 2417600 19820000 8206500 2881800 47978000 35612000 29829000 9265500 14982000 36118000 8778600 0 8297900 5 24 5 74;75;76;77;78;79;80;81;82;83;84;85;86;87 66;67;68;69;70;71;72 72 7 3997900 2671200 1560400 9685800 5061900 2831500 7781600 7144400 6849600 4702500 5052900 5964500 3218400 0 3562600 AAFPNLNSGSGLK ______________________________ ______________________________ M A A L K K 2 0 2 0 0 0 0 2 0 0 2 1 0 1 1 2 0 0 0 0 0 0 13 0 1274.6619 Q9SI20 Q9SI20 2 14 Elongation factor 1-delta 2 yes yes 2 0.00097675 57.859 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 17665000 0 0 0 4398000 3178500 2126900 0 0 0 0 0 7961200 0 0 0 6 212 6 88;89;90;91 73 73 1 0 0 0 2149200 1960500 2089700 0 0 0 0 0 1314700 0 0 0 AAGAVAKLIAK HNIEITLGRGGQLARAAGAVAKLIAKEGKS QLARAAGAVAKLIAKEGKSATLKLPSGEVR R A A A K E 5 0 0 0 0 0 0 1 0 1 1 2 0 0 0 0 0 0 0 1 0 0 11 1 1011.6441 P56791 P56791 155 165 rpl2-A 50S ribosomal protein L2, chloroplastic yes yes 2 3.1345E-08 72.355 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 82964000 0 348710 6033000 0 0 0 20216000 20363000 15281000 2160900 3117500 11120000 0 1687600 2636700 7 123 7 92;93;94;95;96;97;98;99;100;101 74;75;76 76 3 0 329270 3893800 0 0 0 3278800 4085200 3508900 1096700 1051400 1836400 0 1593800 1132000 AAGAVAKLIAKEGK HNIEITLGRGGQLARAAGAVAKLIAKEGKS RAAGAVAKLIAKEGKSATLKLPSGEVRLIS R A A G K S 5 0 0 0 0 0 1 2 0 1 1 3 0 0 0 0 0 0 0 1 0 0 14 2 1325.8031 P56791 P56791 155 168 rpl2-A 50S ribosomal protein L2, chloroplastic yes yes 3 7.3109E-44 107.85 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 58004000 5858800 7525200 2681500 0 0 0 20317000 9798400 4734800 0 2120000 3882200 0 1086500 0 8 123 8 102;103;104;105;106;107;108;109;110 77;78;79;80;81 79 5 5858800 7105600 1730700 0 0 0 3295200 1965700 1087300 0 715000 641110 0 1026100 0 AAQPEPVAPVENAGEK PAAERPASSTPVEEKAAQPEPVAPVENAGE AQPEPVAPVENAGEKEGEEETAAAKKKKKK K A A E K E 4 0 1 0 0 1 3 1 0 0 0 1 0 0 3 0 0 0 0 2 0 0 16 0 1605.7999 F4I420 F4I420 329 344 At1g76810 yes yes 2 1.5969E-17 79.974 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 68642000 2083200 3114200 4201000 4662500 3236700 2090400 7576500 7596400 4914800 3582700 4996600 12001000 3623500 0 4962600 9 38 9 111;112;113;114;115;116;117;118;119;120;121;122;123;124 82;83 83 2 2083200 2940600 2711400 2278500 1996400 2053900 1228800 1524000 1128600 1818300 1685100 1981900 1328500 0 2130700 ADAVNAQTPSLSEQYHLEK ______________________________ NAQTPSLSEQYHLEKEVKQDTSAKPVEVKE M A D E K E 3 0 1 1 0 2 2 0 1 0 2 1 0 0 1 2 1 0 1 1 0 0 19 0 2100.0124 Q9S7L9 Q9S7L9 2 20 COX6B-1 Cytochrome c oxidase subunit 6b-1 yes yes 2;3 2.0001E-60 110.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 2 1 1 1 108120000 2188200 2599600 2379600 4301800 4287300 3808900 11966000 10174000 10283000 3973900 9004100 30438000 5787100 2529700 4402600 10 203 10 125;126;127;128;129;130;131;132;133;134;135;136;137;138;139;140;141;142;143 84;85 84 2 2188200 2454600 1535800 2102200 2644500 3742300 1940800 2041100 2361200 2016900 3036700 5026600 2121700 2389100 1890200 ADDEVVDPKK ______________________________ ______________________________ M A D K K Y 1 0 0 3 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 2 0 0 10 1 1114.5506 Q0WWE3 Q0WWE3 2 11 At1g15120 Cytochrome b-c1 complex subunit 6 yes yes 2 1.0039E-15 101.33 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 66910000 0 0 0 711340 0 3672800 2809300 3621100 0 7456300 8485500 25856000 8399300 0 5898000 11 139 11 144;145;146;147;148;149;150;151;152 86;87;88;89;90;91;92 88 7 0 0 0 347620 0 3608700 455650 726450 0 3784300 2861800 4270000 3079400 0 2532300 ADKLKQSLPPGLSVQDL CSRYLYTLCVFDQEKADKLKQSLPPGLSVQ KLKQSLPPGLSVQDL_______________ K A D D L - 1 0 0 2 0 2 0 1 0 0 4 2 0 0 2 2 0 0 0 1 0 0 17 2 1808.0044 O22860 O22860 53 69 RPL38A 60S ribosomal protein L38 yes yes 3 0.0037573 51.771 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 75149000 7336500 11086000 25010000 0 0 0 15672000 9727500 6316800 0 0 0 0 0 0 12 67 12 153;154;155;156;157;158 93;94 93 2 7336500 10468000 16142000 0 0 0 2541900 1951500 1450500 0 0 0 0 0 0 ADQQAGTIVGGVR ______________________________ ______________________________ M A D V R D 2 1 0 1 0 2 0 3 0 1 0 0 0 0 0 0 1 0 0 2 0 0 13 0 1270.663 Q945Q1 Q945Q1 2 14 CYS1 Cysteine proteinase inhibitor 1 yes yes 2 1.2737E-26 93.551 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 42402000 4588900 4495200 0 3502600 0 2114900 9052500 7695500 6961900 0 0 0 0 1485600 2505300 13 169 13 159;160;161;162;163;164;165;166;167 95;96;97;98;99 96 5 4588900 4244600 0 1711700 0 2077900 1468200 1543800 1598600 0 0 0 0 1403100 1075600 ADSVSKNAPPEFQNTK AGKKFCFEPTSFTVKADSVSKNAPPEFQNT DSVSKNAPPEFQNTKLMTRLTYTLDEIEGP K A D T K L 2 0 2 1 0 1 1 0 0 0 0 2 0 1 2 2 1 0 0 1 0 0 16 1 1731.8428 P23321 P23321 147 162 PSBO1 Oxygen-evolving enhancer protein 1-1, chloroplastic yes yes 3 5.6552E-43 85.45 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 81342000 0 0 0 0 0 9942200 0 0 0 0 17257000 19082000 17906000 0 17155000 14 87 14 168;169;170;171;172 100;101;102;103 103 4 0 0 0 0 0 9768500 0 0 0 0 5820200 3151200 6564600 0 7365400 ADVEPEVAAAGVPKKR ______________________________ DVEPEVAAAGVPKKRTFKKFAFKGVDLDAL M A D K R T 4 1 0 1 0 0 2 1 0 0 0 2 0 0 2 0 0 0 0 3 0 0 16 2 1635.8944 F4I472;Q08112;Q9FY64 F4I472 2 17 RPS15;RPS15A;RPS15D 40S ribosomal protein S15-1;40S ribosomal protein S15-4 yes no 3 4.0417E-21 59.185 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 100530000 6046500 0 0 0 0 0 0 43450000 37579000 0 0 0 0 13456000 0 15 39 15 173;174;175;176 104;105;106 106 3 6046500 0 0 0 0 0 0 8716800 8629200 0 0 0 0 12708000 0 AEDSPAVTSTPLVVTEHPVEPTTELPVEHPEEK VEKIKEKLPGHHDEKAEDSPAVTSTPLVVT VEPTTELPVEHPEEKKGILEKIKEKLPGYH K A E E K K 2 0 0 1 0 0 7 0 2 0 2 1 0 0 6 2 5 0 0 5 0 0 33 0 3563.7519 P31168 P31168 202 234 COR47 Dehydrin COR47 yes yes 4 1.2469E-95 75.103 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67656000 0 0 8278600 3021400 6951100 4475700 31531000 13398000 0 0 0 0 0 0 0 16 93 16 177;178;179;180;181;182 107;108;109 108 3 0 0 5343100 1476500 4287500 4397500 5114000 2688000 0 0 0 0 0 0 0 AEEIKNVPEQEVPK ______________________________ MAEEIKNVPEQEVPKVATEESSAEVTDRGL M A E P K V 1 0 1 0 0 1 4 0 0 1 0 2 0 0 2 0 0 0 0 2 0 0 14 1 1608.8359 P42763 P42763 2 15 ERD14 Dehydrin ERD14 yes yes 2 3.6801E-47 132.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 228790000 17474000 24979000 36420000 8985900 20779000 11350000 27534000 21790000 19933000 15546000 23997000 0 0 0 0 17 99 17 183;184;185;186;187;188;189;190;191;192;193 110;111;112;113;114;115;116;117;118;119;120 116 11 17474000 23586000 23506000 4391200 12817000 11151000 4465700 4371400 4577100 7890100 8093200 0 0 0 0 AEKAVTIRTR ______________________________ ______________________________ M A E T R K 2 2 0 0 0 0 1 0 0 1 0 1 0 0 0 0 2 0 0 1 0 0 10 2 1143.6724 A0A1I9LMY7;Q9SS17;Q8LC83 A0A1I9LMY7 2 11 RPS24A;RPS24B 40S ribosomal protein S24-1;40S ribosomal protein S24-2 yes no 2;3 0.0056744 44.349 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 2 2 1 1 2 2 2 1 1 1 1 633190000 2319000 1824900 26634000 93024000 61090000 72660000 0 22200000 158130000 44742000 40480000 106820000 1872000 0 1398500 18 0 18 194;195;196;197;198;199;200;201;202;203;204;205;206;207;208;209;210;211 121;122 121 2 2319000 1723200 17190000 45459000 37681000 71390000 0 4453700 36311000 22708000 13652000 17640000 686330 0 600420 AEKTDSSAAAAAAPATK THRPKSLSFTKTAIRAEKTDSSAAAAAAPA KTDSSAAAAAAPATKEAPVGFTPPQLDPNT R A E T K E 8 0 0 1 0 0 1 0 0 0 0 2 0 0 1 2 2 0 0 0 0 0 17 1 1559.7791 Q9S7H1 Q9S7H1 45 61 psaD1 Photosystem I reaction center subunit II-1, chloroplastic yes yes 2;3 0 255.52 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 2 2 663060000 2395600 12903000 21442000 45991000 34871000 23890000 81335000 51808000 53569000 35025000 57456000 118290000 70459000 0 53632000 19 202 19 212;213;214;215;216;217;218;219;220;221;222;223;224;225;226;227;228;229;230;231;232;233;234;235;236;237 123;124;125;126;127;128;129;130;131;132 126 9 2395600 12184000 13839000 22475000 21509000 23473000 13192000 10394000 12301000 17777000 19378000 19534000 25832000 0 23026000 AEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLR THRPKSLSFTKTAIRAEKTDSSAAAAAAPA TPSPIFAGSTGGLLRKAQVEEFYVITWNSP R A E L R K 10 1 1 2 0 1 2 4 0 1 3 2 0 2 7 4 5 0 0 1 0 0 46 2 4477.2765 Q9S7H1 Q9S7H1 45 90 psaD1 Photosystem I reaction center subunit II-1, chloroplastic yes yes 4 1.6447E-08 20.352 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 91341000 0 1409300 0 0 0 0 0 30401000 0 14074000 15673000 12363000 6797200 5385100 5238500 20 202 20 238;239;240;241;242;243;244;245 133;134;135;136;137;138;139;140 134 8 0 1330800 0 0 0 0 0 6098900 0 7143300 5285800 2041600 2492000 5086000 2249100 AEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLR SHRPKSLSFTKTAIRAEKTESSSAAPAVKE TPSPIFAGSTGGLLRKAQVEEFYVITWNSP R A E L R K 6 1 1 1 0 1 3 4 0 1 3 2 0 2 7 5 4 0 0 2 0 0 43 2 4292.1965 Q9SA56 Q9SA56 44 86 PSAD2 Photosystem I reaction center subunit II-2, chloroplastic yes yes 4 3.7525E-07 27.873 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 37588000 0 0 0 0 0 0 0 11211000 10546000 3580800 6397800 0 3258900 0 2593900 21 207 21 246;247;248;249;250;251 141;142 142 2 0 0 0 0 0 0 0 2249000 2421700 1817400 2157700 0 1194800 0 1113700 AEQTEKAFLK ______________________________ ______________________________ M A E L K Q 2 0 0 0 0 1 2 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 10 1 1163.6186 P16181;P42733;O65569 P16181 2 11 RPS11A;RPS11C;RPS11B 40S ribosomal protein S11-1;40S ribosomal protein S11-3;40S ribosomal protein S11-2 yes no 2 0 160.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 723320000 30051000 34871000 76682000 20417000 0 2140600 198340000 148030000 127950000 15800000 18058000 25297000 10767000 4427500 10490000 22 84 22 252;253;254;255;256;257;258;259;260;261;262;263;264;265 143;144;145;146;147;148;149 143 4 30051000 32927000 49491000 9977600 0 2103200 32169000 29697000 29381000 8018800 6090400 4177500 3947400 4181500 4504000 AEQTEKAFLKQPK ______________________________ ______________________________ M A E P K V 2 0 0 0 0 2 2 0 0 0 1 3 0 1 1 0 1 0 0 0 0 0 13 2 1516.8249 P16181;P42733;O65569 P16181 2 14 RPS11A;RPS11C;RPS11B 40S ribosomal protein S11-1;40S ribosomal protein S11-3;40S ribosomal protein S11-2 yes no 2;3 8.5239E-35 136.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 2 2 2 2 1 1 1 1 1 1 907080000 43411000 2751100 3704900 90201000 69555000 27616000 274550000 199970000 11245000 47321000 36191000 66288000 22607000 11669000 0 23 84 23 266;267;268;269;270;271;272;273;274;275;276;277;278;279;280;281;282;283;284;285 150;151;152;153;154;155;156;157 157 8 43411000 2597700 2391200 44080000 42902000 27134000 44529000 40118000 2582100 24017000 12206000 10947000 8288200 11021000 0 AFGDFQKATPEER GGSADLASSNMTLLKAFGDFQKATPEERNL LKAFGDFQKATPEERNLRFGVREHGMGAIC K A F E R N 2 1 0 1 0 1 2 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 13 1 1494.7103 F4JBY2;Q8RWV0 F4JBY2 467 479 At3g60750;TKL-1 Transketolase-1, chloroplastic yes no 3 1.4027E-05 51.841 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 42303000 2242300 3499000 4317300 0 0 0 11713000 0 7119400 0 0 0 6544300 2126500 4740700 24 54 24 286;287;288;289;290;291;292;293 158 158 1 2242300 3303900 2786400 0 0 0 1899800 0 1634800 0 0 0 2399300 2008400 2035400 AFGDFQKATPEERNLR GGSADLASSNMTLLKAFGDFQKATPEERNL FGDFQKATPEERNLRFGVREHGMGAICNGI K A F L R F 2 2 1 1 0 1 2 1 0 0 1 1 0 2 1 0 1 0 0 0 0 0 16 2 1877.9384 F4JBY2;Q8RWV0 F4JBY2 467 482 At3g60750;TKL-1 Transketolase-1, chloroplastic yes no 3 6.3276E-22 87.498 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50800000 2719100 2703600 6334800 0 0 0 13821000 15196000 5720100 0 0 0 0 4304900 0 25 54 25 294;295;296;297;298;299;300 159;160;161 161 3 2719100 2552900 4088500 0 0 0 2241700 3048700 1313500 0 0 0 0 4065700 0 AFIDPKKNFLAR ______________________________ LLKAFIDPKKNFLARMHMKAISTRLRRYGL K A F A R M 2 1 1 1 0 0 0 0 0 1 1 2 0 2 1 0 0 0 0 0 0 0 12 2 1418.8034 Q9SUU5;F4JUC2 Q9SUU5 7 18 QCR7-1;At4g32470 Cytochrome b-c1 complex subunit 7-1;Cytochrome b-c1 complex subunit 7 yes no 3;4 1.4968E-05 53.751 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1 2 2 2 2 2 1 2 225230000 14121000 12263000 13622000 6244700 6037700 1604000 50564000 41924000 40666000 0 5152400 21251000 3525100 0 8254800 26 224 26 301;302;303;304;305;306;307;308;309;310;311;312;313;314;315;316;317;318;319;320;321;322;323;324 162;163;164;165;166;167;168 168 7 14121000 11579000 8791600 3051700 3724200 1576000 8201000 8410700 9338100 0 1737700 3509400 1292400 0 3544200 AFLGGRPLPEEF EVPFSQPARALVLFKAFLGGRPLPEEF___ LFKAFLGGRPLPEEF_______________ K A F E F - 1 1 0 0 0 0 2 2 0 0 2 0 0 2 2 0 0 0 0 0 0 0 12 1 1331.6874 Q8VY01 Q8VY01 454 465 SCPL46 Serine carboxypeptidase-like 46 yes yes 2 7.6146E-08 62.546 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 33429000 0 0 0 2717500 0 0 2516100 0 2205400 0 0 20956000 0 2186200 2847700 27 164 27 325;326;327;328;329;330;331 169;170;171 169 2 0 0 0 1328000 0 0 408080 0 506430 0 0 3460700 0 2064800 1222700 AFLKQPKVFLSSK ______________________________ EKAFLKQPKVFLSSKKSGKGKRPGKGGNRF K A F S K K 1 0 0 0 0 1 0 0 0 0 2 3 0 2 1 2 0 0 0 1 0 0 13 2 1491.8813 P16181;P42733;O65569 P16181 8 20 RPS11A;RPS11C;RPS11B 40S ribosomal protein S11-1;40S ribosomal protein S11-3;40S ribosomal protein S11-2 yes no 3 2.1729E-05 51.774 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 58603000 3207500 2731400 2815500 3557600 3712600 1576300 8921100 9566200 6895100 3770900 3527400 0 2960600 2740500 2620100 28 84 28 332;333;334;335;336;337;338;339;340;341;342;343;344;345 172;173;174;175;176 175 0 3207500 2579100 1817100 1738500 2290000 1548800 1446900 1919200 1583300 1913800 1189700 0 1085400 2588300 1124900 AFSLGKSLSTGNSKSFFVQQNK RKKIWKRKGYWTSLKAFSLGKSLSTGNSKS LSTGNSKSFFVQQNK_______________ K A F N K - 1 0 2 0 0 2 0 2 0 0 2 3 0 3 0 5 1 0 0 1 0 0 22 2 2374.2281 P61847 P61847 31 52 rpl32 50S ribosomal protein L32, chloroplastic yes yes 3;4 5.7208E-51 79.013 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 1 250540000 24322000 31482000 62244000 6371200 3990400 0 58543000 23892000 27358000 0 3043200 0 0 5765700 3532500 29 132 29 346;347;348;349;350;351;352;353;354;355;356;357;358;359;360;361;362;363 177;178;179;180;181;182;183 180 7 24322000 29726000 40173000 3113500 2461300 0 9495100 4793300 6282200 0 1026400 0 0 5445400 1516600 AGAEVIGISGDDSASHKAFASK KQACAFRDSYEKFKKAGAEVIGISGDDSAS ISGDDSASHKAFASKYKLPYTLLSDEGNKV K A G S K Y 5 0 0 2 0 0 1 3 1 2 0 2 0 1 0 4 0 0 0 1 0 0 22 1 2117.0389 A0A1I9LR27;F4JBC9;Q9LU86 A0A1I9LR27 66 87 ATPRX Q;PRXQ Peroxiredoxin Q, chloroplastic yes no 3;4 6.2718E-10 49.528 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 290510000 11413000 10488000 11228000 24715000 15749000 3240000 27922000 29084000 22521000 16437000 27025000 47007000 19171000 8434300 16080000 30 2 30 364;365;366;367;368;369;370;371;372;373;374;375;376;377;378;379;380;381;382;383;384;385;386;387;388;389;390;391;392 184;185;186;187;188;189;190;191;192;193;194;195 190 12 11413000 9902800 7246500 12078000 9714300 3183400 4528700 5834800 5171500 8342500 9114400 7762800 7028400 7965700 6904000 AGFKAIALTVDTPR KNRNVVEQLVRRAERAGFKAIALTVDTPRL RAGFKAIALTVDTPRLGRRESDIKNRFTLP R A G P R L 3 1 0 1 0 0 0 1 0 1 1 1 0 1 1 0 2 0 0 1 0 0 14 1 1458.8195 A8MS37;B3H4B8;Q9LRR9;Q2V3V9;F4JFV6;Q9LRS0 A8MS37 140 153 At3g14420;GLO1;At3g14415;GLO2 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1;Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 yes no 3 2.1137E-14 58.172 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 28258000 1859100 3705200 3181600 1527400 0 0 8220400 4104200 5660100 0 0 0 0 0 0 31 27 31 393;394;395;396;397;398;399 196 196 1 1859100 3498600 2053500 746410 0 0 1333300 823370 1299700 0 0 0 0 0 0 AGGAYTMNTASAVTVR KAVGIWGCKDCGKVKAGGAYTMNTASAVTV GGAYTMNTASAVTVRSTIRRLREQIEG___ K A G V R S 4 1 1 0 0 0 0 2 0 0 0 0 1 0 0 1 3 0 1 2 0 0 16 0 1568.7617 Q8RXU5;Q9SRK6 Q8RXU5 65 80 RPL37AC;RPL37AB 60S ribosomal protein L37a-2;Putative 60S ribosomal protein L37a-1 yes no 2 2.2243E-33 96.143 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 49250000 0 0 0 5328100 0 0 15498000 11958000 8254000 1610900 0 6601300 0 0 0 32 162 32 400;401;402;403;404;405 197;198;199;200 198 31 4 0 0 0 2603700 0 0 2513600 2399000 1895400 817600 0 1090200 0 0 0 AGIREVHFLPFNPVDKR DAAMVGMLADPKEARAGIREVHFLPFNPVD IREVHFLPFNPVDKRTALTYIDSDGNWHRV R A G K R T 1 2 1 1 0 0 1 1 1 1 1 1 0 2 2 0 0 0 0 2 0 0 17 2 1994.085 A0A1P8AYX4;F4JPJ7;P19456;P20649 A0A1P8AYX4 326 342 HA2;AHA2;AHA1 ATPase 2, plasma membrane-type;ATPase 1, plasma membrane-type yes no 4 0.0031984 45.014 By matching By MS/MS 1 1 12204000 0 0 0 0 0 0 2774400 9430000 0 0 0 0 0 0 0 33 12 33 406;407 201 201 1 0 0 0 0 0 0 449980 1891800 0 0 0 0 0 0 0 AGKGFTLEELK PVVHGQTLKYNMKVRAGKGFTLEELKVAGI MKVRAGKGFTLEELKVAGIPKKLAPTIGIS R A G L K V 1 0 0 0 0 0 2 2 0 0 2 2 0 1 0 0 1 0 0 0 0 0 11 1 1191.6499 Q9FF90;Q9SMT4 Q9FF90 70 80 RPL13D;RPL13C 60S ribosomal protein L13-3;Putative 60S ribosomal protein L13-2 yes no 3 0.029604 34.692 By matching By MS/MS 1 1 3458700 0 935810 2522900 0 0 0 0 0 0 0 0 0 0 0 0 34 179 34 408;409 202 202 1 0 883640 1628300 0 0 0 0 0 0 0 0 0 0 0 0 AGLINKIGDALHIGGGNK ______________________________ INKIGDALHIGGGNKEGEHKKEEEHKKHVD M A G N K E 2 0 2 1 0 0 0 5 1 3 2 2 0 0 0 0 0 0 0 0 0 0 18 1 1746.9741 Q9SLJ2 Q9SLJ2 2 19 F20D21.23 yes yes 3 2.6071E-10 45.014 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 40006000 1842000 0 0 1610500 2457800 2523800 17496000 0 0 5442000 0 5844800 0 1117400 1672000 35 217 35 410;411;412;413;414;415;416;417;418 203 203 1 1842000 0 0 787030 1516000 2479700 2837600 0 0 2762000 0 965230 0 1055300 717860 AGLQFPVGR RGKPKATKSVSRSSKAGLQFPVGRIARFLK VSRSSKAGLQFPVGRIARFLKAGKYAERVG K A G G R I 1 1 0 0 0 1 0 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 943.52395 Q9S9K7;O04848;Q9LD28;O81826;Q9LHQ5;Q9C681;Q94F49;Q9C944;Q9FJE8 Q9S9K7 29 37 RAT5 Probable histone H2AXb;Probable histone H2AXa;Histone H2A.6;Probable histone H2A.3;Probable histone H2A.2;Probable histone H2A.1;Probable histone H2A.5;Probable histone H2A variant 3;Probable histone H2A.7 yes no 2 0.00013744 86.344 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 646770000 19475000 25231000 28901000 44748000 31585000 24457000 68538000 56923000 58868000 27811000 48422000 131480000 33025000 0 47306000 36 66 36 419;420;421;422;423;424;425;426;427;428;429;430;431;432 204;205;206;207;208;209;210;211;212;213;214;215 209 10 19475000 23824000 18653000 21867000 19482000 24030000 11116000 11420000 13518000 14115000 16331000 21714000 12108000 0 20310000 AGLQFPVGRIAR RGKPKATKSVSRSSKAGLQFPVGRIARFLK SSKAGLQFPVGRIARFLKAGKYAERVGAGA K A G A R F 2 2 0 0 0 1 0 2 0 1 1 0 0 1 1 0 0 0 0 1 0 0 12 1 1283.7462 Q9S9K7;O04848;Q9LD28;O81826;Q9LHQ5;Q9C681;Q94F49 Q9S9K7 29 40 RAT5 Probable histone H2AXb;Probable histone H2AXa;Histone H2A.6;Probable histone H2A.3;Probable histone H2A.2;Probable histone H2A.1;Probable histone H2A.5 yes no 3 1.7684E-05 55.461 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 431210000 14518000 18771000 23130000 18509000 17638000 12711000 49097000 41592000 45018000 17902000 33416000 70505000 25659000 12336000 30406000 37 66 37 433;434;435;436;437;438;439;440;441;442;443;444;445;446;447 216;217;218;219;220;221 220 4 14518000 17725000 14928000 9045100 10879000 12489000 7963200 8344100 10337000 9085800 11270000 11643000 9407200 11651000 13055000 AGLQFPVGRIARFLK RGKPKATKSVSRSSKAGLQFPVGRIARFLK AGLQFPVGRIARFLKAGKYAERVGAGAPVY K A G L K A 2 2 0 0 0 1 0 2 0 1 2 1 0 2 1 0 0 0 0 1 0 0 15 2 1671.9937 Q9S9K7;O04848;Q9LD28;O81826;Q9LHQ5;Q9C681 Q9S9K7 29 43 RAT5 Probable histone H2AXb;Probable histone H2AXa;Histone H2A.6;Probable histone H2A.3;Probable histone H2A.2;Probable histone H2A.1 yes no 3 6.2121E-07 51.774 By MS/MS By MS/MS By MS/MS 1 1 1 13483000 2047600 2361400 0 0 0 0 9074400 0 0 0 0 0 0 0 0 38 66 38 448;449;450 222 222 1 2047600 2229700 0 0 0 0 1471800 0 0 0 0 0 0 0 0 AGRPIPVPNSGIQISQLGHVK LNYNPVEEWFFHRLKAGRPIPVPNSGIQIS VPNSGIQISQLGHVKDLATAFLNVLGNEKA K A G V K D 1 1 1 0 0 2 0 3 1 3 1 1 0 0 3 2 0 0 0 2 0 0 21 1 2167.2226 A0A1P8ATL2;Q9SA52 A0A1P8ATL2 232 252 CSP41B Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic yes no 4 0.00025124 38.824 By MS/MS By MS/MS By MS/MS 1 1 1 17239000 0 0 0 0 0 0 7889800 4823100 4526300 0 0 0 0 0 0 39 7 39 451;452;453 223 223 0 0 0 0 0 0 0 1279700 967610 1039400 0 0 0 0 0 0 AHFTASSSER KYNPRVTSSRRKNRKAHFTASSSERRVIMS RKNRKAHFTASSSERRVIMSSPLSTDLRQK K A H E R R 2 1 0 0 0 0 1 0 1 0 0 0 0 1 0 3 1 0 0 0 0 0 10 0 1091.4996 P51414 P51414 17 26 RPL26A 60S ribosomal protein L26-1 yes yes 2 0.022917 56.122 By MS/MS 1 4091200 0 0 0 0 0 0 4091200 0 0 0 0 0 0 0 0 40 111 40 454 224 224 1 0 0 0 0 0 0 663560 0 0 0 0 0 0 0 0 AHGLAPEIPEDLYHLIK QVKSVTGSKILRILKAHGLAPEIPEDLYHL GLAPEIPEDLYHLIKKAVAIRKHLERNRKD K A H I K K 2 0 0 1 0 0 2 1 2 2 3 1 0 0 2 0 0 0 1 0 0 0 17 0 1915.0203 P59224;P59223 P59224 77 93 RPS13B;RPS13A 40S ribosomal protein S13-2;40S ribosomal protein S13-1 yes no 3;4 3.5329E-29 65.805 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 89466000 0 467290 0 0 0 0 37597000 24143000 27259000 0 0 0 0 0 0 41 127 41 455;456;457;458;459;460;461 225;226;227;228;229;230 229 6 0 441240 0 0 0 0 6097900 4843500 6259400 0 0 0 0 0 0 AKANSLAQLGKYTGEGESEEAK KEENVKAAQDILLARAKANSLAQLGKYTGE QLGKYTGEGESEEAKEGMFVKGYTY_____ R A K A K E 4 0 1 0 0 1 4 3 0 0 2 3 0 0 0 2 1 0 1 0 0 0 22 2 2280.1234 F4IGL5;Q944G9;Q9SJU4 F4IGL5 358 379 FBA1;FBA2 Fructose-bisphosphate aldolase;Probable fructose-bisphosphate aldolase 2, chloroplastic;Probable fructose-bisphosphate aldolase 1, chloroplastic yes no 3;4 7.8069E-67 85.808 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 1 253810000 23064000 22255000 47917000 13631000 0 0 63039000 37474000 37860000 0 0 8571700 0 0 0 42 42 42 462;463;464;465;466;467;468;469;470;471;472;473;474;475;476 231;232;233;234;235;236;237;238;239;240;241 236 11 23064000 21014000 30926000 6661200 0 0 10224000 7517900 8693800 0 0 1415500 0 0 0 AKDVEAVPGEGFQTR ______________________________ AKDVEAVPGEGFQTRDYQDPPPAPFIDGAE M A K T R D 2 1 0 1 0 1 2 2 0 0 0 1 0 1 1 0 1 0 0 2 0 0 15 1 1602.8002 P43286 P43286 2 16 PIP2-1 Aquaporin PIP2-1;Aquaporin PIP2-1, N-terminally processed yes yes 2;3 4.9286E-70 161.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 2 3 2 3 3 3 3 3 3 3 1272300000 22628000 23985000 21307000 65799000 82500000 29128000 142720000 91640000 126940000 77791000 119930000 221010000 114920000 42232000 89758000 43 102 43;44 477;478;479;480;481;482;483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515;516;517;518 242;243;244;245;246;247;248;249;250;251;252;253;254;255;256;257;258;259;260;261;262;263;264;265;266;267;268 248 27 22628000 22647000 13752000 32155000 50887000 28619000 23148000 18385000 29148000 39482000 40448000 36498000 42132000 39886000 38537000 AKDVEGPEGFQTR ______________________________ ______________________________ M A K T R D 1 1 0 1 0 1 2 2 0 0 0 1 0 1 1 0 1 0 0 1 0 0 13 1 1432.6947 P43287 P43287 2 14 PIP2-2 Aquaporin PIP2-2;Aquaporin PIP2-2, N-terminally processed yes yes 2;3 7.5643E-22 90.629 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 2 2 1 2 1 2 1 2 1 1 84758000 1350900 1493900 3973100 5660100 2401000 0 12396000 8395200 11782000 3965600 13959000 13203000 6178100 0 0 44 103 45;46 519;520;521;522;523;524;525;526;527;528;529;530;531;532;533;534;535 269;270;271;272 271 4 1350900 1410600 2564300 2766000 1480900 0 2010500 1684200 2705500 2012700 4707900 2180300 2265000 0 0 ALGLPVSKL NASPPNASPSIVNSKALGLPVSKL______ SIVNSKALGLPVSKL_______________ K A L K L - 1 0 0 0 0 0 0 1 0 0 3 1 0 0 1 1 0 0 0 1 0 0 9 1 896.5695 Q9C9W5 Q9C9W5 378 386 HPR Glycerate dehydrogenase HPR, peroxisomal yes yes 2 0.00027051 75.311 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 130170000 0 0 0 9585700 6921200 4439500 12071000 10745000 10145000 9240200 12232000 25887000 12546000 7881400 8474300 45 175 47 536;537;538;539;540;541;542;543;544;545;546;547 273;274 273 1 0 0 0 4684400 4269000 4361900 1957800 2155700 2329500 4689700 4125400 4275000 4599500 7443600 3638400 ALLGKASFR REASNSWVAKYRKEKALLGKASFRDIYSAL KYRKEKALLGKASFRDIYSALNAVSGHYVS K A L F R D 2 1 0 0 0 0 0 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 9 1 961.5709 Q9LR64 Q9LR64 121 129 PSB27-1 Photosystem II repair protein PSB27-H1, chloroplastic yes yes 2 0.012415 60.788 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 61304000 0 0 0 0 0 0 12911000 9485900 11352000 0 0 0 10155000 6517700 10883000 46 191 48 548;549;550;551;552;553 275;276 275 2 0 0 0 0 0 0 2094100 1903000 2606700 0 0 0 3722900 6155600 4672400 ALLVEK ______________________________ ______________________________ M A L E K T 1 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 6 0 671.42178 A8MQP1;F4JTV4;Q9LK36;O23255 A8MQP1 2 7 MEE58;SAHH2;SAHH1 Adenosylhomocysteinase;Adenosylhomocysteinase 2;Adenosylhomocysteinase 1 yes no 1 3.4512E-06 112.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 421910000 0 0 20770000 25611000 0 0 31544000 27756000 19846000 48002000 40357000 106980000 46687000 23988000 30372000 47 22 49 554;555;556;557;558;559;560;561;562;563;564 277;278;279;280;281;282 278 0 0 0 13405000 12515000 0 0 5116200 5568400 4557300 24363000 13611000 17667000 17117000 22655000 13040000 ALPTEKDVQPK ______________________________ VVGRALPTEKDVQPKIYRMKLWATNEVRAK R A L P K I 1 0 0 1 0 1 1 0 0 0 1 2 0 0 2 0 1 0 0 1 0 0 11 1 1224.6714 P51418;A0A1P8AY36 P51418 15 25 RPL18AB 60S ribosomal protein L18a-2 yes no 2 0.0066349 63.565 By MS/MS By matching By matching 1 1 1 41970000 0 0 0 0 0 0 19908000 12366000 9695700 0 0 0 0 0 0 48 112 50 565;566;567 283 283 1 0 0 0 0 0 0 3228800 2480900 2226400 0 0 0 0 0 0 ALPTEKDVQPKIYR ______________________________ RALPTEKDVQPKIYRMKLWATNEVRAKSKF R A L Y R M 1 1 0 1 0 1 1 0 0 1 1 2 0 0 2 0 1 0 1 1 0 0 14 2 1656.9199 P51418;A0A1P8AY36 P51418 15 28 RPL18AB 60S ribosomal protein L18a-2 yes no 3;4 9.5337E-36 90.146 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 2 2 1 1 1 138760000 4473400 4691000 6599700 0 0 0 49291000 32178000 33665000 3432800 0 0 0 1722300 2702300 49 112 51 568;569;570;571;572;573;574;575;576;577;578;579;580;581 284;285;286;287;288;289;290 290 7 4473400 4429400 4259600 0 0 0 7994500 6455600 7730400 1742300 0 0 0 1626700 1160200 ALSTSKPDPVVEDQA SRSPYQEHTDFLASKALSTSKPDPVVEDQA ALSTSKPDPVVEDQA_______________ K A L Q A - 2 0 0 2 0 1 1 0 0 0 1 1 0 0 2 2 1 0 0 2 0 0 15 1 1555.773 P49688 P49688 271 285 RPS2C 40S ribosomal protein S2-3 yes yes 2 5.2297E-06 62.303 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 251510000 12831000 19204000 41301000 0 0 0 65606000 39542000 39451000 4123400 5845300 6873100 6608200 2682300 7448000 50 109 52 582;583;584;585;586;587;588;589;590;591;592;593 291 291 1 12831000 18133000 26656000 0 0 0 10641000 7932800 9059200 2092800 1971400 1135000 2422700 2533300 3197700 ALTVAKSALEAIR ______________________________ ______________________________ M A L I R E 4 1 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 13 1 1341.798 F4IZR4;Q9M9M9 F4IZR4 2 14 At3g03100 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 2 8.8654E-16 68.735 By matching By MS/MS By MS/MS 1 1 1 5799800 0 549270 0 0 0 0 3166800 0 2083700 0 0 0 0 0 0 51 48 53 594;595;596 292;293 292 2 0 518650 0 0 0 0 513630 0 478480 0 0 0 0 0 0 ALTVVEKPVEEPAPAKPASASLDR KIQNPPPEQIFDDSKALTVVEKPVEEPAPA EEPAPAKPASASLDRDVKLADLSKEKRLSF K A L D R D 5 1 0 1 0 0 3 0 0 0 2 2 0 0 4 2 1 0 0 3 0 0 24 2 2474.3381 Q9M2D8 Q9M2D8 68 91 Uncharacterized protein At3g61260 yes yes 4 3.1189E-10 46.833 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 24234000 0 0 2302600 1598700 2958100 0 7550700 7519000 2304400 0 0 0 0 0 0 52 197 54 597;598;599;600;601;602 294 294 1 0 0 1486100 781270 1824600 0 1224600 1508400 529160 0 0 0 0 0 0 ANPGREGVGLNMR EVQYLHPKDGVYPEKANPGREGVGLNMRSI EKANPGREGVGLNMRSIGKNVSPIEVKFTG K A N M R S 1 2 2 0 0 0 1 3 0 0 1 0 1 0 1 0 0 0 0 1 0 0 13 1 1369.6885 Q9S7H1;Q9SA56 Q9S7H1 175 187 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2;3 1.2978E-08 72.038 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 2 1 1 2 2 2 1 2 1 1 517210000 26855000 21237000 16317000 25806000 29206000 19194000 65399000 30369000 66522000 40851000 43489000 68257000 38649000 9052600 16008000 53 202;207 55;56 603;604;605;606;607;608;609;610;611;612;613;614;615;616;617;618;619;620;621;622;623;624;625 295;296;297;298;299 297 35 5 26855000 20053000 10531000 12611000 18015000 18859000 10607000 6092600 15275000 20733000 14667000 11272000 14169000 8549700 6873100 ANSLAQLGKYTGEGESEEAK ENVKAAQDILLARAKANSLAQLGKYTGEGE QLGKYTGEGESEEAKEGMFVKGYTY_____ K A N A K E 3 0 1 0 0 1 4 3 0 0 2 2 0 0 0 2 1 0 1 0 0 0 20 1 2080.9913 F4IGL5;Q944G9;Q9SJU4 F4IGL5 360 379 FBA1;FBA2 Fructose-bisphosphate aldolase;Probable fructose-bisphosphate aldolase 2, chloroplastic;Probable fructose-bisphosphate aldolase 1, chloroplastic yes no 3 1.4099E-09 55.864 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 76419000 7384800 8019700 15225000 5357300 0 0 16737000 10417000 13277000 0 0 0 0 0 0 54 42 57 626;627;628;629;630;631;632 300;301;302 300 2 7384800 7572600 9826300 2618000 0 0 2714700 2089900 3048900 0 0 0 0 0 0 APGVQTPVIVR VTHDISNLTCADFLRAPGVQTPVIVRFSTV DFLRAPGVQTPVIVRFSTVVHERASPETMR R A P V R F 1 1 0 0 0 1 0 1 0 1 0 0 0 0 2 0 1 0 0 3 0 0 11 0 1135.6713 B9DG18;A0A1P8B564;A0A1P8AWT7;Q42547;P25819;F4HUL6;F4JM86 B9DG18 92 102 CAT3;CAT2 Catalase-3;Catalase-2;Catalase yes no 2 7.7772E-10 86.953 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 81161000 1129900 1224100 0 3212600 2342200 1837900 12726000 12563000 9806400 3923500 4947700 9362100 8914000 3810100 5362100 55 10 58 633;634;635;636;637;638;639;640;641;642;643;644;645;646 303;304;305;306 306 3 1129900 1155900 0 1569900 1444700 1805800 2064000 2520300 2251800 1991300 1668600 1546100 3268100 3598400 2302200 APLGQNTVLLR KAGGECLTFDQLALRAPLGQNTVLLRGPKN LALRAPLGQNTVLLRGPKNSREAVKHFGPA R A P L R G 1 1 1 0 0 1 0 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 11 0 1180.6928 Q940B0;P42791;A0A1P8BGQ0;A0A1I9LT16 Q940B0 129 139 RPL18C;RPL18B 60S ribosomal protein L18-3;60S ribosomal protein L18-2 yes no 2 1.2493E-23 100.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 337830000 3960300 7681700 16185000 0 4744900 0 118690000 72615000 74505000 5873900 8710200 5933400 7977300 3534400 7418100 56 100 59 647;648;649;650;651;652;653;654;655;656;657;658;659 307;308;309;310;311;312;313;314 311 8 3960300 7253400 10446000 0 2926700 0 19251000 14568000 17108000 2981200 2937600 979850 2924700 3338000 3184900 APWLEPLRGPNGLDLSR EVIFGGETMRFWDLRAPWLEPLRGPNGLDL WLEPLRGPNGLDLSRLKKDIQPWQERRSAE R A P S R L 1 2 1 1 0 0 1 2 0 0 4 0 0 0 3 1 0 1 0 0 0 0 17 1 1890.0112 P56778 P56778 363 379 psbC Photosystem II CP43 reaction center protein yes yes 3 0.003797 55.213 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 37097000 0 0 0 0 0 0 0 2824800 3813700 3278900 4798200 6845300 7541000 4239700 3755500 57 121 60 660;661;662;663;664;665;666;667 315;316;317 315 3 0 0 0 0 0 0 0 566710 875730 1664100 1618200 1130500 2764700 4004200 1612400 ARIKVHELR ______________________________ ______________________________ M A R L R D 1 2 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 2 1120.6829 A0A1I9LSB4;F4KDR2;Q9SF53;Q9M3D2;Q9LZ41;O80626 A0A1I9LSB4 2 10 At5g02610;RPL35A;RPL35C;RPL35D;RPL35B 60S ribosomal protein L35-1;60S ribosomal protein L35-3;60S ribosomal protein L35-4;60S ribosomal protein L35-2 yes no 2;3 5.3517E-09 93.262 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 92331000 0 0 0 1876900 1000700 0 60436000 15118000 12436000 0 0 0 0 1463000 0 58 3 61 668;669;670;671;672;673;674 318;319 319 2 0 0 0 917190 617260 0 9802100 3033000 2855700 0 0 0 0 1381800 0 ARVYDDEVR DQFPGQSIDFFGALRARVYDDEVRKFVESL FFGALRARVYDDEVRKFVESLGVEKIGKRL R A R V R K 1 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 9 1 1121.5465 F4IVZ7;P10896 F4IVZ7 350 358 RCA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic yes no 3 0.020584 52.716 By MS/MS By MS/MS By matching By matching 1 1 1 1 52445000 8130700 9392600 0 19924000 0 0 0 14998000 0 0 0 0 0 0 0 59 47 62 675;676;677;678 320 320 1 8130700 8868900 0 9736500 0 0 0 3008900 0 0 0 0 0 0 0 ASFDEAPPGNAK ______________________________ ______________________________ M A S A K A 3 0 1 1 0 0 1 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 12 0 1202.5568 B3H4Y9;O23138 B3H4Y9 2 13 CYTC-1 Cytochrome c-1 yes no 1;2 3.0587E-06 77.923 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 328820000 5202200 0 5473700 11981000 10869000 14306000 31933000 34536000 25737000 22609000 30341000 76869000 25650000 10885000 22427000 60 29 63 679;680;681;682;683;684;685;686;687;688;689;690;691;692;693 321;322;323;324;325;326;327;328;329;330;331;332;333;334;335;336 325 16 5202200 0 3532800 5855000 6703900 14056000 5179300 6928500 5909900 11475000 10233000 12694000 9403800 10280000 9629100 ASFDEAPPGNAKAGEK ______________________________ SFDEAPPGNAKAGEKIFRTKCAQCHTVEAG M A S E K I 4 0 1 1 0 0 2 2 0 0 0 2 0 1 2 1 0 0 0 0 0 0 16 1 1587.7529 B3H4Y9;O23138 B3H4Y9 2 17 CYTC-1 Cytochrome c-1 yes no 2 1.0719E-67 135.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 869130000 0 5920600 7570400 31371000 36136000 37975000 93574000 97103000 65273000 59556000 84582000 190800000 75755000 27601000 55915000 61 29 64 694;695;696;697;698;699;700;701;702;703;704;705;706;707 337;338;339;340;341;342;343;344;345;346;347;348;349;350;351;352;353;354;355;356;357;358;359 354 23 0 5590500 4886000 15330000 22289000 37311000 15177000 19481000 14989000 30226000 28526000 31510000 27774000 26068000 24007000 ASFDEAPPGNPK ______________________________ ______________________________ M A S P K A 2 0 1 1 0 0 1 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 12 0 1228.5724 Q9T0G2 Q9T0G2 2 13 CYTC-2 Cytochrome c-2 yes yes 2 5.172E-07 75.213 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 31334000 905920 0 1072800 0 0 4291400 8174000 0 0 0 0 16890000 0 0 0 62 229 65 708;709;710;711;712 360;361;362 360 2 905920 0 692380 0 0 4216500 1325700 0 0 0 0 2789200 0 0 0 ASFDEAPPGNPKAGEK ______________________________ SFDEAPPGNPKAGEKIFRTKCAQCHTVEKG M A S E K I 3 0 1 1 0 0 2 2 0 0 0 2 0 1 3 1 0 0 0 0 0 0 16 1 1613.7686 Q9T0G2 Q9T0G2 2 17 CYTC-2 Cytochrome c-2 yes yes 2 7.1309E-44 123.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 186850000 1896900 1841100 0 5961800 7965200 8351100 17442000 19238000 14965000 12530000 18235000 44878000 14912000 6165100 12467000 63 229 66 713;714;715;716;717;718;719;720;721;722;723;724;725;726 363;364;365;366;367;368;369;370;371;372;373 365 11 1896900 1738500 0 2913400 4913000 8205100 2828900 3859400 3436300 6359400 6149900 7411200 5467200 5822700 5352400 ASGDYAIVIAHNPDNDTSR CNVEHHVGDRGVFARASGDYAIVIAHNPDN YAIVIAHNPDNDTSRIKLPSGSKKIVPSGC R A S S R I 3 1 2 3 0 0 0 1 1 2 0 0 0 0 1 2 1 0 1 1 0 0 19 0 2014.9344 Q42064 Q42064 129 147 RPL8C 60S ribosomal protein L8-3 yes yes 3 0.0010788 41.202 By matching By matching By MS/MS 1 1 1 17246000 0 0 0 0 0 0 7192500 4369800 5684200 0 0 0 0 0 0 64 147 67 727;728;729 374 374 1 0 0 0 0 0 0 1166600 876660 1305300 0 0 0 0 0 0 ASGDYAIVIAHNPDNDTSRIKLPSGSK CNVEHHVGDRGVFARASGDYAIVIAHNPDN PDNDTSRIKLPSGSKKIVPSGCRAMIGQVA R A S S K K 3 1 2 3 0 0 0 2 1 3 1 2 0 0 2 4 1 0 1 1 0 0 27 2 2825.4308 Q42064 Q42064 129 155 RPL8C 60S ribosomal protein L8-3 yes yes 5 0.0033529 32.264 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 30722000 0 1073600 0 0 0 0 12821000 10126000 6702200 0 0 0 0 0 0 65 147 68 730;731;732;733 375 375 1 0 1013800 0 0 0 0 2079400 2031400 1539000 0 0 0 0 0 0 ASGDYAIVIAHNPDSDTTR CNVEHHVGDRGVLARASGDYAIVIAHNPDS YAIVIAHNPDSDTTRIKLPSGSKKIVPSGC R A S T R I 3 1 1 3 0 0 0 1 1 2 0 0 0 0 1 2 2 0 1 1 0 0 19 0 2001.9392 P46286 P46286 129 147 RPL8A 60S ribosomal protein L8-1 yes yes 3 1.718E-66 96.666 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 140600000 2861600 5655300 6008500 9034400 6397500 0 47220000 32130000 31292000 0 0 0 0 0 0 66 104 69 734;735;736;737;738;739;740;741 376;377;378;379;380;381;382;383 382 7 2861600 5340000 3878000 4415000 3946100 0 7658700 6446000 7185600 0 0 0 0 0 0 ASGDYAIVIAHNPDSDTTRIK CNVEHHVGDRGVLARASGDYAIVIAHNPDS IVIAHNPDSDTTRIKLPSGSKKIVPSGCRA R A S I K L 3 1 1 3 0 0 0 1 1 3 0 1 0 0 1 2 2 0 1 1 0 0 21 1 2243.1182 P46286 P46286 129 149 RPL8A 60S ribosomal protein L8-1 yes yes 4 1.0367E-05 48.288 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 61904000 0 2562900 0 0 0 0 22279000 15948000 21114000 0 0 0 0 0 0 67 104 70 742;743;744;745 384 384 1 0 2420000 0 0 0 0 3613400 3199600 4848500 0 0 0 0 0 0 ASGDYAIVIAHNPDSDTTRIKLPSGSK CNVEHHVGDRGVLARASGDYAIVIAHNPDS PDSDTTRIKLPSGSKKIVPSGCRAMIGQVA R A S S K K 3 1 1 3 0 0 0 2 1 3 1 2 0 0 2 4 2 0 1 1 0 0 27 2 2812.4355 P46286 P46286 129 155 RPL8A 60S ribosomal protein L8-1 yes yes 3;4;5 4.5879E-83 92.336 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 3 3 3 2 2 2 2 1 2 555110000 2777500 8653500 12569000 9965100 10561000 8172800 129250000 117380000 128750000 18364000 28010000 27726000 24017000 8102500 20796000 68 104 71 746;747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772;773;774;775;776 385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400;401;402;403;404;405 398 21 2777500 8171000 8112000 4869800 6514400 8030000 20964000 23549000 29565000 9320300 9446800 4578700 8805100 7652400 8928700 ASGSLKSLISSAVGRGVTEAR ______________________________ SLISSAVGRGVTEARARIFGHMLNPTGQRS M A S A R A 3 2 0 0 0 0 1 3 0 1 2 1 0 0 0 5 1 0 0 2 0 0 21 2 2045.1229 Q8GXH5 Q8GXH5 2 22 yes yes 3 3.9955E-71 95.662 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 36240000 1715300 0 0 1900000 0 0 11232000 7288900 12452000 1651000 0 0 0 0 0 69 158 72 777;778;779;780;781;782 406;407;408;409 406 4 1715300 0 0 928520 0 0 1821800 1462300 2859400 837950 0 0 0 0 0 ASHIVGYPR ______________________________ ______________________________ M A S P R M 1 1 0 0 0 0 0 1 1 1 0 0 0 0 1 1 0 0 1 1 0 0 9 0 998.52976 Q9SRV5;O50008 Q9SRV5 2 10 MS2;MS1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2;5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 yes no 2 5.5704E-10 102.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 362550000 21452000 26113000 37265000 16576000 11019000 4339200 64957000 55399000 38092000 12118000 12271000 31880000 20954000 10112000 0 70 72 73 783;784;785;786;787;788;789;790;791;792;793;794;795;796 410;411;412;413;414;415;416;417;418;419;420;421;422;423;424;425;426;427 422 17 21452000 24657000 24051000 8100600 6796600 4263400 10535000 11114000 8747000 6150100 4138500 5264800 7682300 9550000 0 ASQLDVVVSNK AHNISTKKRKAIVERASQLDVVVSNKLGRL IVERASQLDVVVSNKLGRLRSQEDE_____ R A S N K L 1 0 1 1 0 1 0 0 0 0 1 1 0 0 0 2 0 0 0 3 0 0 11 0 1158.6245 Q9FHG2 Q9FHG2 113 123 RPL32B 60S ribosomal protein L32-2 yes yes 2 0.01482 58.981 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 50740000 1415000 1693600 3162700 3563500 0 0 12780000 13581000 12643000 0 1900900 0 0 0 0 71 180 74 797;798;799;800;801;802;803;804 428 428 1 1415000 1599200 2041200 1741400 0 0 2072800 2724600 2903200 0 641110 0 0 0 0 ASQLDVVVSNKLGR AHNISTKKRKAIVERASQLDVVVSNKLGRL RASQLDVVVSNKLGRLRSQEDE________ R A S G R L 1 1 1 1 0 1 0 1 0 0 2 1 0 0 0 2 0 0 0 3 0 0 14 1 1484.8311 Q9FHG2 Q9FHG2 113 126 RPL32B 60S ribosomal protein L32-2 yes yes 3 3.7145E-09 61.932 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38955000 1007700 1315800 0 3027200 0 0 15981000 9297400 8326500 0 0 0 0 0 0 72 180 75 805;806;807;808;809;810 429;430 429 2 1007700 1242400 0 1479300 0 0 2591900 1865200 1912000 0 0 0 0 0 0 ASQLDVVVSNKLGRLR AHNISTKKRKAIVERASQLDVVVSNKLGRL SQLDVVVSNKLGRLRSQEDE__________ R A S L R S 1 2 1 1 0 1 0 1 0 0 3 1 0 0 0 2 0 0 0 3 0 0 16 2 1754.0163 Q9FHG2 Q9FHG2 113 128 RPL32B 60S ribosomal protein L32-2 yes yes 4 0.012691 38.028 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 44732000 0 0 4382900 0 0 0 21765000 10030000 8553500 0 0 0 0 0 0 73 180 76 811;812;813;814 431 431 1 0 0 2828800 0 0 0 3530100 2012200 1964100 0 0 0 0 0 0 ASQLDVVVTNR AHNVSTKKRKAIVERASQLDVVVTNRLARL IVERASQLDVVVTNRLARLRSQEDE_____ R A S N R L 1 1 1 1 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 3 0 0 11 0 1200.6463 P49211 P49211 113 123 RPL32A 60S ribosomal protein L32-1 yes yes 2 0.030212 56.81 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48971000 932160 1414900 1322500 2580900 0 0 11343000 9613700 9270700 1689200 0 6194500 2217800 0 2391900 74 107 77 815;816;817;818;819;820;821;822;823;824;825 432 432 0 932160 1336000 853580 1261200 0 0 1839700 1928700 2128800 857340 0 1023000 813100 0 1026900 ASQLDVVVTNRLAR AHNVSTKKRKAIVERASQLDVVVTNRLARL RASQLDVVVTNRLARLRSQEDE________ R A S A R L 2 2 1 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 14 1 1540.8685 P49211 P49211 113 126 RPL32A 60S ribosomal protein L32-1 yes yes 3 1.9919E-13 71.176 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 362520000 9377000 10829000 23745000 12329000 0 0 153440000 74743000 67574000 0 0 10485000 0 0 0 75 107 78 826;827;828;829;830;831;832;833 433;434 434 1 9377000 10225000 15326000 6024800 0 0 24887000 14995000 15517000 0 0 1731500 0 0 0 ASREIFNISGEK KDLATAFLNVLGNEKASREIFNISGEKYVT NEKASREIFNISGEKYVTFDGLAKACAKAG K A S E K Y 1 1 1 0 0 0 2 1 0 2 0 1 0 1 0 2 0 0 0 0 0 0 12 1 1349.6939 A0A1P8ATL2;Q9SA52 A0A1P8ATL2 267 278 CSP41B Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic yes no 2;3 2.0318E-79 129.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 1 1 1 1 1 1 313430000 2942700 4793200 5851100 9309700 16981000 11144000 76119000 81931000 73786000 3433100 4677000 7556700 6869900 3439900 4594900 76 7 79 834;835;836;837;838;839;840;841;842;843;844;845;846;847;848;849;850;851;852;853 435;436;437;438;439;440;441;442;443;444;445;446;447;448;449;450 447 16 2942700 4526000 3776400 4549500 10474000 10949000 12346000 16437000 16943000 1742400 1577400 1247900 2518700 3248800 1972800 ASVGFKAGVK ______________________________ QTETKASVGFKAGVKEYKLTYYTPEYETKD K A S V K E 2 0 0 0 0 0 0 2 0 0 0 2 0 1 0 1 0 0 0 2 0 0 10 1 962.55492 O03042 O03042 9 18 rbcL Ribulose bisphosphate carboxylase large chain yes yes 2 8.7706E-13 90.661 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 675520000 0 0 0 21120000 0 0 29258000 31389000 24601000 62024000 127310000 211200000 107690000 0 60940000 77 64 80 854;855;856;857;858;859;860;861;862;863;864;865 451;452;453;454;455;456;457;458 456 7 0 0 0 10321000 0 0 4745500 6297300 5649000 31479000 42935000 34878000 39480000 0 26164000 ASVGFKAGVKEYK ______________________________ TKASVGFKAGVKEYKLTYYTPEYETKDTDI K A S Y K L 2 0 0 0 0 0 1 2 0 0 0 3 0 1 0 1 0 0 1 2 0 0 13 2 1382.7558 O03042 O03042 9 21 rbcL Ribulose bisphosphate carboxylase large chain yes yes 2;3 4.5607E-26 87.308 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 1 1 549450000 4826800 8374700 9600000 18173000 14676000 12996000 37521000 62824000 50291000 31079000 56378000 65223000 89685000 27518000 60284000 78 64 81 866;867;868;869;870;871;872;873;874;875;876;877;878;879;880;881;882;883;884;885;886;887 459;460;461;462;463;464;465;466 464 7 4826800 7907800 6195900 8880900 9052100 12769000 6085600 12604000 11548000 15774000 19014000 10771000 32881000 25989000 25883000 ATATEVPSAVRRSSSSGK SSLQNGNARSVQPIKATATEVPSAVRRSSS TEVPSAVRRSSSSGKTKVGINGFGRIGRLV K A T G K T 3 2 0 0 0 0 1 1 0 0 0 1 0 0 1 5 2 0 0 2 0 0 18 2 1789.9282 Q9SAJ6 Q9SAJ6 69 86 GAPCP1 Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic yes yes 3 0.0074955 27.85 By MS/MS By MS/MS 1 1 16752000 0 0 0 9201300 0 0 0 0 0 0 0 0 0 0 7550300 79 208 82 888;889 467;468 467 2 0 0 0 4496500 0 0 0 0 0 0 0 0 0 0 3241700 ATAYQPMKPGK ______________________________ ______________________________ M A T G K A 2 0 0 0 0 1 0 1 0 0 0 2 1 0 2 0 1 0 1 0 0 0 11 1 1190.6118 P49200 P49200 2 12 RPS20A 40S ribosomal protein S20-1 yes yes 2 0.0020058 60.76 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 52865000 1000100 1019900 0 4116600 0 2336600 14987000 10680000 0 0 8810000 9915400 0 0 0 80 105 83 890;891;892;893;894;895;896;897 469;470 470 20 2 1000100 963020 0 2011700 0 2295800 2430700 2142600 0 0 2971300 1637500 0 0 0 ATGGNKTKTPGPGAQSALR RCKELGITAMHVKLRATGGNKTKTPGPGAQ NKTKTPGPGAQSALRALARSGMKIGRIEDV R A T L R A 3 1 1 0 0 1 0 4 0 0 1 2 0 0 2 1 3 0 0 0 0 0 19 2 1810.965 P42036;Q9CAX6;Q9SIH0 Q9CAX6 98 116 RPS14C;RPS14B;RPS14A 40S ribosomal protein S14-3;40S ribosomal protein S14-2;40S ribosomal protein S14-1 no no 2;3;4 2.4677E-99 131.72 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 3 2 2 1 1 795360000 6636200 21083000 29942000 21484000 6187700 16558000 199060000 253620000 237320000 2537800 0 0 0 924620 0 81 98;176;213 84 898;899;900;901;902;903;904;905;906;907;908;909;910;911;912;913;914;915 471;472;473;474;475;476;477;478;479;480;481 477 11 6636200 19907000 19325000 10499000 3816700 16269000 32286000 50882000 54496000 1288000 0 0 0 873260 0 ATGKTVKDVSPHEFVK ______________________________ TGKTVKDVSPHEFVKAYAAHLKRSGKIELP M A T V K A 1 0 0 1 0 0 1 1 1 0 0 3 0 1 1 1 2 0 0 3 0 0 16 2 1741.9363 Q9FNP8 Q9FNP8 2 17 RPS19C 40S ribosomal protein S19-3 yes yes 3 9.9394E-40 86.944 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 65822000 3671400 3027800 5658700 0 0 1350600 17491000 16129000 12414000 0 0 5123600 0 956550 0 82 185 85 916;917;918;919;920;921;922;923;924 482;483;484 483 3 3671400 2859000 3652200 0 0 1327000 2836900 3235800 2850500 0 0 846120 0 903420 0 ATITVVKAR ______________________________ ______________________________ M A T A R Q 2 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 2 0 0 2 0 0 9 1 957.59712 P25696 P25696 2 10 ENO2 Bifunctional enolase 2/transcriptional activator yes yes 2 0.0001504 76.847 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 105620000 0 0 5458700 18650000 8112800 0 0 6478500 11087000 8247900 9143100 26348000 7831200 4258200 0 83 88 86 925;926;927;928;929;930;931;932;933;934 485;486;487;488;489;490;491;492;493;494 491 9 0 0 3523100 9113800 5004100 0 0 1299700 2545900 4186100 3083600 4351200 2871100 4021700 0 ATLVVGNVLPLR AEGMYTGQFLYCGKKATLVVGNVLPLRSIP GKKATLVVGNVLPLRSIPEGAVVCNVEHHV K A T L R S 1 1 1 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 0 3 0 0 12 0 1250.7711 P46286;Q42064 P46286 94 105 RPL8A;RPL8C 60S ribosomal protein L8-1;60S ribosomal protein L8-3 no no 2 2.0375E-11 88.942 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 134300000 2022200 2759500 5382500 3283700 3000400 3867400 18680000 17468000 12679000 11971000 9344400 13800000 13034000 10762000 6244500 84 104;147 87 935;936;937;938;939;940;941;942;943;944;945;946;947;948;949 495;496;497;498;499;500;501;502;503;504;505;506;507;508 506 13 2022200 2605700 3473900 1604700 1850700 3799800 3029700 3504400 2911400 6075900 3151500 2278900 4778500 10164000 2681100 ATNGSASSAQLSQKEADVR ______________________________ SASSAQLSQKEADVRMMCAAEVHLGTKNCN M A T V R M 4 1 1 1 0 2 1 1 0 0 1 1 0 0 0 4 1 0 0 1 0 0 19 1 1918.9344 B9DG17;Q08682 B9DG17 2 20 P40;RPSaA 40S ribosomal protein SA;40S ribosomal protein Sa-1 yes no 2 1.8755E-83 142.07 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29212000 1441700 2425200 0 1433100 0 0 10744000 5803100 7364800 0 0 0 0 0 0 85 30 88 950;951;952;953;954;955 509;510;511 509 3 1441700 2289900 0 700310 0 0 1742500 1164200 1691200 0 0 0 0 0 0 ATQTVEDSSRSGPR ______________________________ MATQTVEDSSRSGPRSTTVGKLLKPLNSEY M A T P R S 1 2 0 1 0 1 1 1 0 0 0 0 0 0 1 3 2 0 0 1 0 0 14 1 1489.7121 P56780 P56780 2 15 psbH Photosystem II reaction center protein H yes yes 2;3 1.0779E-47 109.24 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 5 7 4 5 4 4 4 5 6 4 3 6 1081400000 1901200 3082000 8776100 51890000 38883000 21232000 176280000 39327000 35165000 38439000 142470000 296780000 106160000 5297800 115700000 86 122 89 956;957;958;959;960;961;962;963;964;965;966;967;968;969;970;971;972;973;974;975;976;977;978;979;980;981;982;983;984;985;986;987;988;989;990;991;992;993;994;995;996;997;998;999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021;1022;1023 512;513;514;515;516;517;518;519;520;521;522;523;524;525;526;527;528;529;530;531;532;533;534;535;536;537;538;539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571;572;573 537 60 1901200 2910200 5664200 25358000 23983000 20861000 28590000 7889700 8075000 19509000 48051000 49011000 38919000 5003500 49676000 ATQTVEDSSRSGPRSTTVGK ______________________________ EDSSRSGPRSTTVGKLLKPLNSEYGKVAPG M A T G K L 1 2 0 1 0 1 1 2 0 0 0 1 0 0 1 4 4 0 0 2 0 0 20 2 2063.0243 P56780 P56780 2 21 psbH Photosystem II reaction center protein H yes yes 3;4 3.497E-86 110.38 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1243700000 12223000 12881000 3921300 52514000 62145000 71876000 40761000 57832000 58081000 99683000 154200000 232950000 227210000 0 157400000 87 122 90 1024;1025;1026;1027;1028;1029;1030;1031;1032;1033;1034;1035;1036;1037;1038;1039;1040;1041;1042;1043;1044;1045;1046;1047;1048;1049;1050 574;575;576;577;578;579;580;581;582;583;584;585;586;587;588;589 584 16 12223000 12163000 2530800 25663000 38332000 70620000 6611000 11602000 13337000 50592000 52004000 38470000 83300000 0 67578000 ATSEGEISEK YPWKFGSMKRMVVVKATSEGEISEKVEKSI MVVVKATSEGEISEKVEKSIQEAKETCADD K A T E K V 1 0 0 0 0 0 3 1 0 1 0 1 0 0 0 2 1 0 0 0 0 0 10 0 1049.4877 O22914 O22914 47 56 CP12-1 Calvin cycle protein CP12-1, chloroplastic yes yes 2 6.9375E-05 79.469 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 32322000 4159700 3311300 8286500 0 9405100 0 7159000 0 0 0 0 0 0 0 0 88 68 91 1051;1052;1053;1054;1055 590;591 591 2 4159700 3126700 5348200 0 5801200 0 1161100 0 0 0 0 0 0 0 0 ATSEGEISEKVEKSIQEAK YPWKFGSMKRMVVVKATSEGEISEKVEKSI GEISEKVEKSIQEAKETCADDPVSGECVAA K A T A K E 2 0 0 0 0 1 5 1 0 2 0 3 0 0 0 3 1 0 0 1 0 0 19 2 2062.043 O22914 O22914 47 65 CP12-1 Calvin cycle protein CP12-1, chloroplastic yes yes 3 0.0020753 34.094 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30115000 2184900 2459100 3041000 0 3800000 0 7383900 4431900 6814300 0 0 0 0 0 0 89 68 92 1056;1057;1058;1059;1060;1061;1062 592 592 1 2184900 2322000 1962700 0 2343900 0 1197600 889110 1564800 0 0 0 0 0 0 ATSEILSPISGEIIEVNK SVSKEKSFGAVESVKATSEILSPISGEIIE EILSPISGEIIEVNKKLTESPGLINSSPYE K A T N K K 1 0 1 0 0 0 3 1 0 4 1 1 0 0 1 3 1 0 0 1 0 0 18 0 1899.0201 P25855 P25855 98 115 GDH1 Glycine cleavage system H protein 1, mitochondrial yes yes 2 0.0013708 22.198 By matching By matching By MS/MS By MS/MS 1 1 1 1 7190700 1242300 934620 2299600 0 0 2714200 0 0 0 0 0 0 0 0 0 90 89 93 1063;1064;1065;1066 593 593 1 1242300 882510 1484200 0 0 2666800 0 0 0 0 0 0 0 0 0 ATTEVGEAPATTTEAETTELPEIVK ATAYCRKIVRNVVTRATTEVGEAPATTTEA TTTEAETTELPEIVKTAQEAWEKVDDKYAI R A T V K T 4 0 0 0 0 0 6 1 0 1 1 1 0 0 2 0 7 0 0 2 0 0 25 0 2587.2752 Q8LCA1 Q8LCA1 64 88 CURT1B Protein CURVATURE THYLAKOID 1B, chloroplastic yes yes 3 4.1412E-17 53.342 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 80609000 0 0 0 0 0 0 21451000 13203000 9048500 0 0 24292000 0 0 12614000 91 160 94 1067;1068;1069;1070;1071 594;595;596;597;598;599 595 6 0 0 0 0 0 0 3479200 2648800 2077800 0 0 4011700 0 0 5415500 AVGNWFYGR SGDKGPQVANTRIAKAVGNWFYGRTSMDSA NTRIAKAVGNWFYGRTSMDSAFVDRAWDKW K A V G R T 1 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 1 1 1 0 0 9 0 1068.5141 F4JT64;Q940J8 F4JT64 359 367 At4g19410;PAE7 Pectin acetylesterase 7 yes no 2 4.3923E-07 81.672 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 65435000 3645100 2861400 1358500 0 0 0 7269300 0 5584100 20228000 24489000 0 0 0 0 92 58 95 1072;1073;1074;1075;1076;1077;1078 600;601;602;603 603 4 3645100 2701900 876790 0 0 0 1179000 0 1282300 10266000 8259100 0 0 0 0 AVILLQGRYAGKK ______________________________ NKAVILLQGRYAGKKAVIIKSFDDGNRDRP K A V K K A 2 1 0 0 0 1 0 2 0 1 2 2 0 0 0 0 0 0 1 1 0 0 13 2 1415.8613 A8MS28;Q8LCL3;P51419 A8MS28 10 22 At4g15000;RPL27B;RPL27C 60S ribosomal protein L27-2;60S ribosomal protein L27-3 yes no 3 0.022651 39.917 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 16813000 0 0 0 655380 0 0 0 0 0 0 0 2853800 5609100 4785100 2910000 93 26 96 1079;1080;1081;1082;1083 604 604 1 0 0 0 320270 0 0 0 0 0 0 0 471290 2056400 4519300 1249400 AVTFSDLHTERGLK ______________________________ MAVTFSDLHTERGLKTLEEHLAGKTYISGD M A V L K T 1 1 0 1 0 0 1 1 1 0 2 1 0 1 0 1 2 0 0 1 0 0 14 1 1572.826 Q84WM9 Q84WM9 2 15 Elongation factor 1-beta 1 yes yes 3 6.4847E-14 57.802 By MS/MS By MS/MS 1 1 11167000 0 0 0 0 0 0 0 5380200 5787100 0 0 0 0 0 0 94 155 97 1084;1085 605 605 1 0 0 0 0 0 0 0 1079400 1328900 0 0 0 0 0 0 AVVYALSPFQQK ______________________________ KLKAVVYALSPFQQKIMTGLWKDLPEKIHH K A V Q K I 2 0 0 0 0 2 0 0 0 0 1 1 0 1 1 1 0 0 1 2 0 0 12 0 1349.7343 Q9SG91;Q9FLB7 Q9SG91 10 21 T7M13.6;At5g05370 yes no 2 0.010862 66.073 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 59619000 0 0 1684200 0 0 0 19712000 15315000 10515000 2298800 3015100 4975900 0 0 2102600 95 182 98 1086;1087;1088;1089;1090;1091;1092;1093 606;607 606 2 0 0 1087000 0 0 0 3197100 3072400 2414600 1166700 1016900 821730 0 0 902730 AYGGVLSGSAVR YKRSRLSRNRRTVNRAYGGVLSGSAVRERI VNRAYGGVLSGSAVRERIIRAFLVEEQKIV R A Y V R E 2 1 0 0 0 0 0 3 0 0 1 0 0 0 0 2 0 0 1 2 0 0 12 0 1135.5986 Q9FE65 Q9FE65 77 88 RPL34B 60S ribosomal protein L34-2 no no 2 0.024127 39.022 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96 178 99 1094 608 608 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DAFGNANSAR ASILLDNTTSFRTEKDAFGNANSARGFPVI FRTEKDAFGNANSARGFPVIDRMKAAVERA K D A A R G 3 1 2 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 10 0 1021.4577 Q9SMU8;Q9LDN9;Q9LDA4 Q9SMU8 96 105 PER34;PER37;PER38 Peroxidase 34;Peroxidase 37;Peroxidase 38 yes no 2 0.01168 63.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 316970000 4089000 3798800 0 25541000 12798000 30156000 17520000 23929000 22728000 17026000 30364000 79006000 28272000 0 21746000 97 218 100 1095;1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107 609;610;611;612;613;614;615;616;617 609 8 4089000 3587000 0 12481000 7893800 29629000 2841600 4800600 5218900 8641200 10241000 13047000 10365000 0 9336400 DAFGNANSARGFPVIDR ASILLDNTTSFRTEKDAFGNANSARGFPVI FGNANSARGFPVIDRMKAAVERACPRTVSC K D A D R M 3 2 2 2 0 0 0 2 0 1 0 0 0 2 1 1 0 0 0 1 0 0 17 1 1805.8809 Q9SMU8 Q9SMU8 96 112 PER34 Peroxidase 34 yes yes 2;3 4.2785E-54 99.215 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 4 2 1 3 3 3 2 3 2 1541300000 17492000 12178000 12453000 87355000 47687000 47288000 142370000 153020000 113310000 92106000 173220000 347330000 123180000 60703000 111610000 98 218 101 1108;1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140 618;619;620;621;622;623;624;625;626;627;628;629;630;631;632;633;634;635;636;637;638;639;640;641;642;643;644;645 623 27 17492000 11499000 8037500 42689000 29414000 46461000 23091000 30699000 26019000 46747000 58421000 57359000 45161000 57331000 47919000 DAFGNANSARGFPVIDRMK ASILLDNTTSFRTEKDAFGNANSARGFPVI NANSARGFPVIDRMKAAVERACPRTVSCAD K D A M K A 3 2 2 2 0 0 0 2 0 1 0 1 1 2 1 1 0 0 0 1 0 0 19 2 2065.0163 Q9SMU8 Q9SMU8 96 114 PER34 Peroxidase 34 yes yes 3;4 1.9075E-06 60.489 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 2 2 2 2 151130000 2725800 0 0 2210100 0 0 9627100 13147000 4207000 11356000 19226000 41349000 26155000 11911000 9215500 99 218 102 1141;1142;1143;1144;1145;1146;1147;1148;1149;1150;1151;1152;1153;1154;1155;1156;1157;1158 646;647;648;649;650;651;652;653 647 7 2725800 0 0 1080000 0 0 1561400 2637500 966040 5763300 6484000 6828400 9589200 11250000 3956600 DAPPGQKVGLIAAR GGNHQHIGHASTVRRDAPPGQKVGLIAARR RDAPPGQKVGLIAARRTGRLRGQAAASAAK R D A A R R 3 1 0 1 0 1 0 2 0 1 1 1 0 0 2 0 0 0 0 1 0 0 14 1 1391.7885 P46286 P46286 228 241 RPL8A 60S ribosomal protein L8-1 yes yes 3 2.1646E-06 44.299 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 104 103 1159 654 654 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DAPPGQKVGLIAARR GGNHQHIGHASTVRRDAPPGQKVGLIAARR DAPPGQKVGLIAARRTGRLRGQAAASAAKA R D A R R T 3 2 0 1 0 1 0 2 0 1 1 1 0 0 2 0 0 0 0 1 0 0 15 2 1547.8896 P46286 P46286 228 242 RPL8A 60S ribosomal protein L8-1 yes yes 4 0.027709 28.976 By MS/MS By matching 1 1 10686000 0 0 0 0 0 0 0 0 0 0 0 8814500 0 0 1871200 101 104 104 1160;1161 655 655 1 0 0 0 0 0 0 0 0 0 0 0 1455700 0 0 803400 DDEVQIVR DLRQKYNVRSMPIRKDDEVQIVRGTYKGRE RSMPIRKDDEVQIVRGTYKGREGKVVQVYR K D D V R G 0 1 0 2 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 8 0 972.48762 P51414 P51414 52 59 RPL26A 60S ribosomal protein L26-1 yes yes 2 2.4704E-05 103.41 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43709000 1884700 1793800 1337900 0 0 0 14446000 13457000 9261100 0 1527900 0 0 0 0 102 111 105 1162;1163;1164;1165;1166;1167;1168 656;657 657 2 1884700 1693800 863510 0 0 0 2343000 2699800 2126600 0 515300 0 0 0 0 DDEVQIVRGTYKGR DLRQKYNVRSMPIRKDDEVQIVRGTYKGRE KDDEVQIVRGTYKGREGKVVQVYRRKWVIH K D D G R E 0 2 0 2 0 1 1 2 0 1 0 1 0 0 0 0 1 0 1 2 0 0 14 2 1634.8376 P51414 P51414 52 65 RPL26A 60S ribosomal protein L26-1 yes yes 3;4 3.7207E-45 112.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 321550000 6475400 5442300 12731000 18177000 10605000 4363400 72722000 51373000 47409000 10985000 10840000 27978000 16169000 6493900 19785000 103 111 106 1169;1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180;1181;1182;1183;1184;1185;1186;1187;1188;1189;1190;1191;1192;1193;1194;1195;1196;1197 658;659;660;661;662;663;664;665;666;667;668 668 8 6475400 5138900 8216900 8882900 6541300 4287200 11795000 10306000 10886000 5575500 3655800 4620400 5927800 6133200 8494400 DFKNTQAGDLIDK GPEVSGFDKLTLADKDFKNTQAGDLIDKLL DKDFKNTQAGDLIDKLLQEWKQEPVEIPIQ K D F D K L 1 0 1 3 0 1 0 1 0 1 1 2 0 1 0 0 1 0 0 0 0 0 13 1 1463.7256 Q680B7 Q680B7 481 493 At2g14690 yes yes 3 0.013514 38.021 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100150000 4673500 0 0 0 0 0 0 15886000 0 0 15237000 29999000 19467000 0 14892000 104 152 107 1198;1199;1200;1201;1202;1203 669 669 0 4673500 0 0 0 0 0 0 3187000 0 0 5139000 4954000 7136900 0 6393600 DGEEGEEAAVAAPEEVKKSNHLLR VELGRKKKSASSTKKDGEEGEEAAVAAPEE VAAPEEVKKSNHLLRKIASRQEGRSLDSHI K D G L R K 4 1 1 1 0 0 6 2 1 0 2 2 0 0 1 1 0 0 0 2 0 0 24 2 2577.2671 Q93VG5 Q93VG5 135 158 RPS8A 40S ribosomal protein S8-1 yes yes 4 9.7542E-09 40.012 By MS/MS 1 12289000 0 0 0 0 0 0 12289000 0 0 0 0 0 0 0 0 105 166 108 1204 670 670 1 0 0 0 0 0 0 1993100 0 0 0 0 0 0 0 0 DGVYPEK YRVFPNGEVQYLHPKDGVYPEKANPGREGV EVQYLHPKDGVYPEKANPGREGVGLNMRSI K D G E K A 0 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 7 0 806.38103 Q9S7H1;Q9SA56 Q9S7H1 168 174 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2 0.0022412 110.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 3642800000 148100000 152180000 163590000 247610000 370900000 351680000 0 0 0 253550000 487490000 840790000 345850000 0 281080000 106 202;207 109 1205;1206;1207;1208;1209;1210;1211;1212;1213;1214;1215 671;672;673;674;675;676;677 672 0 148100000 143700000 105590000 121000000 228770000 345530000 0 0 0 128690000 164410000 138850000 126800000 0 120680000 DGVYPEKANPGR YRVFPNGEVQYLHPKDGVYPEKANPGREGV HPKDGVYPEKANPGREGVGLNMRSIGKNVS K D G G R E 1 1 1 1 0 0 1 2 0 0 0 1 0 0 2 0 0 0 1 1 0 0 12 1 1301.6364 Q9S7H1;Q9SA56 Q9S7H1 168 179 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2;3 9.2112E-24 121.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 4 4 3 9 4 9 2 4 3 4 2 5 5626200000 209340000 198300000 250350000 389150000 321670000 199090000 703150000 649630000 649300000 178910000 369390000 906030000 245120000 35974000 320780000 107 202;207 110 1216;1217;1218;1219;1220;1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242;1243;1244;1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277;1278 678;679;680;681;682;683;684;685;686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716;717;718 689 38 209340000 187240000 161580000 190170000 198410000 195610000 114040000 130330000 149100000 90803000 124580000 149620000 89865000 33976000 137720000 DGVYPEKANPGREGVGLNMR YRVFPNGEVQYLHPKDGVYPEKANPGREGV EKANPGREGVGLNMRSIGKNVSPIEVKFTG K D G M R S 1 2 2 1 0 0 2 4 0 0 1 1 1 0 2 0 0 0 1 2 0 0 20 2 2158.0589 Q9S7H1;Q9SA56 Q9S7H1 168 187 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3;4 5.5907E-41 74.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 2 4 3 2 2 3 4 2 2 3398700000 65277000 35117000 34096000 4437100 297520000 2792400 89027000 1385300000 593690000 81078000 47896000 300620000 408500000 22726000 30551000 108 202;207 111;112 1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313 719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749 746 35 30 65277000 33159000 22006000 2168300 183510000 2743600 14439000 277920000 136330000 41150000 16153000 49645000 149770000 21463000 13117000 DIALITGQKPIKTR GDAAQNDKGLEAAMKDIALITGQKPIKTRA KDIALITGQKPIKTRARASIATFKIREDQP K D I T R A 1 1 0 1 0 1 0 1 0 3 1 2 0 0 1 0 2 0 0 0 0 0 14 2 1552.9301 O04603 O04603 111 124 RPL5 50S ribosomal protein L5, chloroplastic yes yes 3 5.428E-17 70.963 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 70382000 1808700 1930600 0 5856000 3381100 2150900 8428100 7521100 8623700 4845800 6351500 12733000 4700300 2051300 0 109 65 113 1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324;1325;1326 750;751;752;753;754;755 753 6 1808700 1823000 0 2861700 2085500 2113300 1367000 1508900 1980200 2459400 2142100 2102800 1723200 1937400 0 DIINVKPLIDR LPPTEAAARAKESAKDIINVKPLIDRKAWP ESAKDIINVKPLIDRKAWPYVQNDLRSKAS K D I D R K 0 1 1 2 0 0 0 0 0 3 1 1 0 0 1 0 0 0 0 1 0 0 11 1 1294.7609 Q9XFT3 Q9XFT3 133 143 PSBQ1 Oxygen-evolving enhancer protein 3-1, chloroplastic yes yes 3 0.0021149 58.37 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 22032000 1089800 1748100 1122900 3372100 0 0 0 2520300 2302300 0 2757900 7119100 0 0 0 110 231 114 1327;1328;1329;1330;1331;1332;1333;1334;1335 756;757 757 2 1089800 1650700 724710 1647900 0 0 0 505620 528670 0 930140 1175700 0 0 0 DIINVKPLIDRK LPPTEAAARAKESAKDIINVKPLIDRKAWP SAKDIINVKPLIDRKAWPYVQNDLRSKASY K D I R K A 0 1 1 2 0 0 0 0 0 3 1 2 0 0 1 0 0 0 0 1 0 0 12 2 1422.8558 Q9XFT3 Q9XFT3 133 144 PSBQ1 Oxygen-evolving enhancer protein 3-1, chloroplastic yes yes 3;4 0.0064288 56.359 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 1 2 1 2 2 1 1 2 130810000 1853900 3372500 2694900 14080000 5130700 3158600 13147000 5389200 14730000 3287000 15921000 35642000 4208600 1994800 6202600 111 231 115 1336;1337;1338;1339;1340;1341;1342;1343;1344;1345;1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358 758;759;760;761 758 4 1853900 3184500 1739300 6880400 3164700 3103400 2132300 1081200 3382400 1668300 5369700 5886000 1543000 1884000 2663100 DIQPWQERR PLRGPNGLDLSRLKKDIQPWQERRSAEYMT LSRLKKDIQPWQERRSAEYMTHAPLGSLNS K D I R R S 0 2 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 9 1 1226.6156 P56778 P56778 383 391 psbC Photosystem II CP43 reaction center protein yes yes 3 0.0031538 60.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 157750000 0 1357400 0 2424200 0 0 8176700 8838600 11122000 8202600 15438000 39046000 45580000 0 17568000 112 121 116 1359;1360;1361;1362;1363;1364;1365;1366;1367;1368 762;763;764 762 1 0 1281700 0 1184700 0 0 1326200 1773200 2553900 4163100 5206700 6448100 16711000 0 7542800 DITFQNTAGPSKHQAVALR HSATVAAVGERFLARDITFQNTAGPSKHQA QNTAGPSKHQAVALRVGSDFSAFYNCDMLA R D I L R V 3 1 1 1 0 2 0 1 1 1 1 1 0 1 1 1 2 0 0 1 0 0 19 1 2053.0705 O49006;Q42534 O49006 373 391 PME3;PME2 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3;Pectinesterase 2 yes no 3;4 2.3781E-56 95.57 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 1 110960000 2023800 1248900 0 8143800 6003600 2817000 8035600 8250100 8813500 0 18472000 41938000 0 0 5213800 113 71 117 1369;1370;1371;1372;1373;1374;1375;1376;1377;1378;1379;1380;1381;1382 765;766;767;768;769;770;771;772 768 8 2023800 1179300 0 3979700 3703100 2767700 1303300 1655100 2023800 0 6229700 6925700 0 0 2238500 DLDQVAGRIAVEP LDTKGGRRITSSGQRDLDQVAGRIAVEP__ QRDLDQVAGRIAVEP_______________ R D L E P - 2 1 0 2 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 13 1 1381.7201 Q9SGA6 Q9SGA6 131 143 RPS19A 40S ribosomal protein S19-1 yes yes 2 6.1961E-34 108.98 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 74477000 6736300 5441700 9070900 0 0 362720 19248000 10854000 17901000 0 0 4861900 0 0 0 114 210 118 1383;1384;1385;1386;1387;1388;1389;1390 773;774;775;776 775 4 6736300 5138300 5854500 0 0 356380 3121800 2177500 4110700 0 0 802900 0 0 0 DLPQTYWPYGKSR SYYDAGNKVFLSQRKDLPQTYWPYGKSRDY RKDLPQTYWPYGKSRDYPNGKFSDGHIVPD K D L S R D 0 1 0 1 0 1 0 1 0 0 1 1 0 0 2 1 1 1 2 0 0 0 13 1 1609.7889 Q9LJG3 Q9LJG3 58 70 ESM1 GDSL esterase/lipase ESM1 yes yes 3 0.0096366 51.841 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46823000 0 0 0 0 0 0 7013400 0 4992100 2892300 9678100 12748000 5052400 1768100 2679000 115 189 119 1391;1392;1393;1394;1395;1396;1397;1398 777;778;779 777 1 0 0 0 0 0 0 1137500 0 1146300 1467900 3264000 2105200 1852300 1669900 1150200 DMRQTVAVGVIK ETFSEYPPLGRFAVRDMRQTVAVGVIKSVD AVRDMRQTVAVGVIKSVDKKDPTGAKVTKA R D M I K S 1 1 0 1 0 1 0 1 0 1 0 1 1 0 0 0 1 0 0 3 0 0 12 1 1315.7282 F4HUA0;Q8W4H7;Q8GTY0;Q0WL56;P0DH99 F4HUA0 339 350 At1g07930;A2;A4;A3;A1 Elongation factor 1-alpha 2;Elongation factor 1-alpha 4;Elongation factor 1-alpha 3;Elongation factor 1-alpha 1 yes no 2;3 0.0026985 62.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 246800000 5758000 6443000 6912800 14755000 2857000 3914900 6695000 20909000 16655000 42965000 23376000 33700000 11718000 10461000 39684000 116 36 120;121 1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424 780;781;782;783 782 5 4 5758000 6083800 4461600 7210500 1762300 3846400 1085900 4194700 3824400 21806000 7883800 5565300 4296200 9880200 17038000 DNIQGITKPAIR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA VLRDNIQGITKPAIRRLARRGGVKRISGLI R D N I R R 1 1 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 12 1 1324.7463 P59259 P59259 25 36 Histone H4 yes yes 2;3 0.0049096 59.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 2 1 1 2 164720000 0 2012700 2768000 5783500 5221200 3389800 22853000 29728000 19553000 7314900 12208000 37764000 5567600 1915400 8636500 117 129 122 1425;1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443 784;785;786;787 784 4 0 1900500 1786500 2826300 3220500 3330500 3706600 5964000 4489900 3712600 4117300 6236400 2041200 1809000 3708000 DNIQGITKPAIRR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA LRDNIQGITKPAIRRLARRGGVKRISGLIY R D N R R L 1 2 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 13 2 1480.8474 P59259 P59259 25 37 Histone H4 yes yes 3 0.0083795 42.843 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 70404000 3792400 3110800 1565300 9701100 3361900 0 18859000 9346600 336840 0 0 18177000 0 2152400 0 118 129 123 1444;1445;1446;1447;1448;1449;1450;1451;1452;1453 788;789 788 2 3792400 2937400 1010300 4740800 2073700 0 3058800 1875100 77348 0 0 3001800 0 2032800 0 DRFYIQPLSPTEAAARAK TDNSDQARDFSLALKDRFYIQPLSPTEAAA YIQPLSPTEAAARAKDSAKEIINVKSFIDK K D R A K D 4 2 0 1 0 1 1 0 0 1 1 1 0 1 2 1 1 0 1 0 0 0 18 2 2033.0694 Q41932 Q41932 117 134 PSBQ2 Oxygen-evolving enhancer protein 3-2, chloroplastic yes yes 3;4 5.2133E-29 68.944 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 2 1 2 1 38302000 3718300 2493500 4908000 0 0 0 10479000 3549700 11093000 0 0 0 0 0 2060600 119 145 124 1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464 790;791;792;793 791 4 3718300 2354400 3167700 0 0 0 1699600 712130 2547300 0 0 0 0 0 884690 DRFYLQPLPPTEAAARAK TDNSDQARDFALALKDRFYLQPLPPTEAAA YLQPLPPTEAAARAKESAKDIINVKPLIDR K D R A K E 4 2 0 1 0 1 1 0 0 0 2 1 0 1 3 0 1 0 1 0 0 0 18 2 2043.0902 Q9XFT3 Q9XFT3 111 128 PSBQ1 Oxygen-evolving enhancer protein 3-1, chloroplastic yes yes 3;4 7.7861E-05 51.695 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 2 2 1 1 59370000 2437400 2438900 3660100 0 1234100 0 14884000 0 14743000 0 5970000 14003000 0 0 0 120 231 125 1465;1466;1467;1468;1469;1470;1471;1472;1473;1474;1475 794;795;796;797;798 795 5 2437400 2303000 2362300 0 761220 0 2414100 0 3385400 0 2013400 2312400 0 0 0 DSHGIPQVKSVTGSK AKKGLTPSQIGVILRDSHGIPQVKSVTGSK DSHGIPQVKSVTGSKILRILKAHGLAPEIP R D S S K I 0 0 0 1 0 1 0 2 1 1 0 2 0 0 1 3 1 0 0 2 0 0 15 1 1538.8053 P59224;P59223 P59224 56 70 RPS13B;RPS13A 40S ribosomal protein S13-2;40S ribosomal protein S13-1 yes no 3 0.0060689 44.44 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 93374000 898090 1959400 1528600 2140700 2668300 0 18977000 34664000 30538000 0 0 0 0 0 0 121 127 126 1476;1477;1478;1479;1480;1481;1482;1483 799 799 1 898090 1850100 986570 1046100 1645800 0 3077800 6954300 7012500 0 0 0 0 0 0 DSPAAAAAPDGATATKPKPPPIGPK VRAAEDPAPASSSSKDSPAAAAAPDGATAT GATATKPKPPPIGPKRGSKVKILRRESYWF K D S P K R 7 0 0 2 0 0 0 2 0 1 0 3 0 0 7 1 2 0 0 0 0 0 25 2 2325.2329 Q9S831 Q9S831 58 82 PSAE1 Photosystem I reaction center subunit IV A, chloroplastic yes yes 3;4 0 164.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 2 2 2 3 3 3 4 2 2 4391600000 106300000 74065000 121650000 257340000 243800000 110830000 521270000 442350000 406360000 164240000 332660000 942300000 288500000 83044000 296890000 122 205 127 1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513;1514;1515;1516;1517;1518;1519;1520;1521;1522;1523 800;801;802;803;804;805;806;807;808;809;810;811;812;813;814;815;816;817;818;819;820;821;822;823;824;825;826;827;828;829;830;831;832;833;834;835;836;837;838;839;840;841;842;843;844;845;846;847;848;849;850;851;852;853;854;855;856;857;858;859;860;861;862;863;864;865 825 66 106300000 69935000 78515000 125760000 150380000 108890000 84545000 88743000 93312000 83360000 112190000 155610000 105770000 78431000 127470000 DVSPHDFVKAYASHLKR ______________________________ SPHDFVKAYASHLKRSGKIELPTWTDIVKT K D V K R S 2 1 0 2 0 0 0 0 2 0 1 2 0 1 1 2 0 0 1 2 0 0 17 2 1969.017 Q9SGA6;Q9LF30 Q9SGA6 9 25 RPS19A;RPS19B 40S ribosomal protein S19-1;40S ribosomal protein S19-2 yes no 4 2.9115E-18 63.709 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 20038000 2072800 1834200 3095400 0 0 0 7237100 0 5798700 0 0 0 0 0 0 123 210 128 1524;1525;1526;1527;1528 866;867;868;869;870 869 5 2072800 1732000 1997800 0 0 0 1173800 0 1331500 0 0 0 0 0 0 DYLHFVKKYQR TCHSAKMQRTIIVRRDYLHFVKKYQRYEKR IVRRDYLHFVKKYQRYEKRHSNIPAHVSPC R D Y Q R Y 0 1 0 1 0 1 0 0 1 0 1 2 0 1 0 0 0 0 2 1 0 0 11 2 1495.7936 P16181 P16181 90 100 RPS11A 40S ribosomal protein S11-1 yes yes 4 2.9065E-05 69.954 By MS/MS By MS/MS By MS/MS 1 1 1 14825000 0 0 0 0 0 0 5951200 4918400 3955800 0 0 0 0 0 0 124 84 129 1529;1530;1531 871;872;873;874 873 4 0 0 0 0 0 0 965220 986730 908380 0 0 0 0 0 0 EAAAPAIGDTAQFPSLG GRGGRGEGGNQRYAKEAAAPAIGDTAQFPS AAPAIGDTAQFPSLG_______________ K E A L G - 5 0 0 1 0 1 1 2 0 1 1 0 0 1 2 1 1 0 0 0 0 0 17 0 1614.789 Q9LVT8 Q9LVT8 341 357 At5g47210 yes yes 2 2.2758E-14 73.327 By MS/MS By MS/MS By MS/MS 1 1 1 33137000 0 0 0 8012800 1906900 0 0 0 0 0 0 23218000 0 0 0 125 193 130 1532;1533;1534 875 875 1 0 0 0 3915700 1176200 0 0 0 0 0 0 3834200 0 0 0 EAGGAVVLTA VKAKLISKTAEKKIKEAGGAVVLTA_____ EKKIKEAGGAVVLTA_______________ K E A T A - 3 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 1 0 0 2 0 0 10 0 886.476 Q9LR33;P49637 Q9LR33 137 146 RPL27AB;RPL27AC 60S ribosomal protein L27a-2;60S ribosomal protein L27a-3 yes no 2 1.1791E-08 29.149 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 126 108 131 1535 876 876 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 EALGALPLYQR LQDMLALVERESKEREALGALPLYQRTLP_ SKEREALGALPLYQRTLP____________ R E A Q R T 2 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 1 0 0 0 11 0 1229.6768 Q9SUU5;F4JWS9;F4JWS8 Q9SUU5 109 119 QCR7-1;At5g25450;QCR7-2 Cytochrome b-c1 complex subunit 7-1;Cytochrome b-c1 complex subunit 7;Cytochrome b-c1 complex subunit 7-2 yes no 2 1.2837E-24 110.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 123180000 3629300 2978900 3297800 11328000 6889700 3932100 21094000 12985000 11770000 0 7596300 20027000 5430400 3495700 8724300 127 224 132 1536;1537;1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548;1549 877;878;879;880;881;882;883;884;885;886 883 10 3629300 2812900 2128500 5536000 4249600 3863400 3421200 2605000 2702700 0 2561900 3307200 1990900 3301600 3745700 EALGALPLYQRTLP LQDMLALVERESKEREALGALPLYQRTLP_ REALGALPLYQRTLP_______________ R E A L P - 2 1 0 0 0 1 1 1 0 0 4 0 0 0 2 0 1 0 1 0 0 0 14 1 1540.8613 Q9SUU5 Q9SUU5 109 122 QCR7-1 Cytochrome b-c1 complex subunit 7-1 yes yes 2 4.4837E-284 163.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 1 1 1 1 1 1 2 1 267200000 6636000 4449900 6382300 13334000 10783000 5829300 44743000 30585000 25905000 9511500 17689000 43121000 17490000 11969000 18772000 128 224 133 1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567 887;888;889;890;891;892;893;894;895;896;897;898;899;900;901;902;903;904;905;906;907 902 20 6636000 4201800 4119200 6516300 6650800 5727500 7256900 6135900 5948400 4827400 5965900 7121000 6412200 11304000 8059600 EAPQGEKPEPVRTHLR TRKPMALIKKLRKKREAPQGEKPEPVRTHL APQGEKPEPVRTHLRNMIIVPEMIGSIIGV R E A L R N 1 2 0 0 0 1 3 1 1 0 1 1 0 0 3 0 1 0 0 1 0 0 16 2 1842.97 F4I472;Q08112 F4I472 72 87 RPS15;RPS15A 40S ribosomal protein S15-1 yes no 3;4 0.00072563 45.434 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 2 1 187520000 0 6665500 10322000 0 6838700 0 48653000 51264000 62668000 0 0 0 0 1109700 0 129 39 134 1568;1569;1570;1571;1572;1573;1574;1575;1576 908;909 908 2 0 6293800 6662100 0 4218200 0 7891100 10284000 14390000 0 0 0 0 1048100 0 EAPVGFTPPQLDPNTPSPIFAGSTGGLLR KTDSSAAAAAAPATKEAPVGFTPPQLDPNT TPSPIFAGSTGGLLRKAQVEEFYVITWNSP K E A L R K 2 1 1 1 0 1 1 4 0 1 3 0 0 2 6 2 3 0 0 1 0 0 29 0 2935.508 Q9S7H1;Q9SA56 Q9S7H1 62 90 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3 0.022503 23.394 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 27879000 0 0 1325900 0 0 0 0 0 9625400 6275500 1110300 0 3393700 5203100 944750 130 202;207 135 1577;1578;1579;1580;1581;1582;1583 910;911 911 2 0 0 855760 0 0 0 0 0 2210300 3185000 374470 0 1244200 4914100 405620 EAPVGFTPPQLDPNTPSPIFAGSTGGLLRK KTDSSAAAAAAPATKEAPVGFTPPQLDPNT PSPIFAGSTGGLLRKAQVEEFYVITWNSPK K E A R K A 2 1 1 1 0 1 1 4 0 1 3 1 0 2 6 2 3 0 0 1 0 0 30 1 3063.6029 Q9S7H1;Q9SA56 Q9S7H1 62 91 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3;4 4.6251E-05 32.985 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 3 3 2 2 2 3 1 2 353170000 900280 3050100 2964600 5696800 4853000 1513600 40207000 48073000 54288000 37989000 45836000 68118000 24295000 2463200 12923000 131 202;207 136 1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609;1610;1611;1612 912;913;914;915;916;917;918;919;920;921;922 914 11 900280 2880000 1913400 2783900 2993400 1487200 6521300 9644300 12466000 19281000 15459000 11249000 8907000 2326300 5548400 EEAEKEIAEYK NAARTAKMARLKQAKEEAEKEIAEYKAQTE KQAKEEAEKEIAEYKAQTEQDFQRKLEETS K E E Y K A 2 0 0 0 0 0 5 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 11 1 1337.6351 O82628 O82628 40 50 VHA-G1 V-type proton ATPase subunit G1 yes yes 2 7.3657E-23 96.253 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 33836000 9394400 8194300 6632500 0 0 0 0 0 9614900 0 0 0 0 0 0 132 78 137 1613;1614;1615;1616 923;924;925 923 3 9394400 7737500 4280700 0 0 0 0 0 2207900 0 0 0 0 0 0 EEPKTVVAAVPVDKLPLESK KAAASGVDGAEPESKEEPKTVVAAVPVDKL VVAAVPVDKLPLESKEAKEKLLLELRLKMK K E E S K E 2 0 0 1 0 0 3 0 0 0 2 3 0 0 3 1 1 0 0 4 0 0 20 2 2148.2042 Q9LER7 Q9LER7 79 98 PSRP5 50S ribosomal protein 5, chloroplastic yes yes 3;4 2.2001E-05 46.663 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 1 2 2 2 2 2 2 233180000 5175900 3585900 3074800 18111000 11517000 5120600 11632000 22586000 8334300 17053000 29637000 65919000 12390000 8438500 10602000 133 187 138 1617;1618;1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643 926;927;928;929;930;931;932 930 5 5175900 3385900 1984500 8850400 7104000 5031100 1886600 4531200 1913800 8655000 9995300 10886000 4542500 7969700 4551900 EETGRQLGQRISFSGQVR ILSGVNYASAAAGIREETGRQLGQRISFSG GRQLGQRISFSGQVRNYQTTVSQVVQLLGD R E E V R N 0 3 0 0 0 3 2 3 0 1 1 0 0 1 0 2 1 0 0 1 0 0 18 2 2047.0559 A0A1P8ASL8;Q9C7N4 A0A1P8ASL8 185 202 GDSL esterase/lipase At1g29670 yes no 4 4.0357E-05 53.828 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 71455000 1579600 0 0 4348300 5189200 3116900 7720100 10693000 4304700 0 9479300 13522000 5875000 0 5626900 134 6 139 1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654 933;934;935;936;937;938 933 6 1579600 0 0 2124900 3200700 3062500 1252100 2145200 988490 0 3197000 2233100 2153900 0 2415900 EGAIQQLENAR KQRILNTIRNSEELREGAIQQLENARARLR EELREGAIQQLENARARLRNVETEADKFRV R E G A R A 2 1 1 0 0 2 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1227.6208 P56759 P56759 72 82 atpF ATP synthase subunit b, chloroplastic yes yes 2 1.5519E-22 96.492 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 118130000 6475300 7244400 5731200 10445000 4512100 0 0 15444000 22738000 0 8580400 31143000 0 0 5812800 135 116 140 1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665 939;940;941;942;943;944;945;946;947;948 948 10 6475300 6840500 3699000 5104200 2783100 0 0 3098400 5221400 0 2893800 5143100 0 0 2495700 EGAIQQLENARAR KQRILNTIRNSEELREGAIQQLENARARLR LREGAIQQLENARARLRNVETEADKFRVNG R E G A R L 3 2 1 0 0 2 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 13 1 1454.759 P56759 P56759 72 84 atpF ATP synthase subunit b, chloroplastic yes yes 2;3 1.582E-09 76.679 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 2 2 1 2 2 1 2 652640000 14356000 12047000 13213000 45997000 34718000 12770000 125630000 90208000 103500000 15843000 40849000 118820000 0 4871700 19819000 136 116 141 1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687 949;950;951;952;953;954;955;956;957;958 957 8 14356000 11375000 8527900 22478000 21415000 12547000 20375000 18097000 23767000 8040800 13777000 19622000 0 4601000 8509200 EGALASSTTSKPLPEVGQR SESEEGSDDEEEEAREGALASSTTSKPLPE ASSTTSKPLPEVGQRRSKRSKRKRTV____ R E G Q R R 2 1 0 0 0 1 2 2 0 0 2 1 0 0 2 3 2 0 0 1 0 0 19 1 1927.0011 F4IJM1;Q8LBP4 F4IJM1 403 421 ALB3 Inner membrane protein ALBINO3, chloroplastic yes no 3 3.9676E-72 86.378 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 132980000 6437900 4178300 7177000 8765800 9130600 7988200 14335000 14362000 13191000 7743800 10147000 18351000 5494800 0 5681300 137 45 142 1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701 959;960;961;962;963;964;965;966;967;968;969 967 11 6437900 3945400 4632100 4283700 5631800 7848700 2324900 2881300 3029100 3930300 3422300 3030600 2014500 0 2439200 EGLLTRDARVVER ALLKVSADHRSPLKKEGLLTRDARVVERKK KKEGLLTRDARVVERKKAGLKKARKAPQFS K E G E R K 1 3 0 1 0 0 2 1 0 0 2 0 0 0 0 0 1 0 0 2 0 0 13 2 1512.8372 Q9XJ27 Q9XJ27 179 191 RPS9 30S ribosomal protein S9, chloroplastic yes yes 3;4 0.011429 42.095 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 1 2 2 118940000 6306600 6966700 15829000 6166100 1669200 0 17247000 13082000 13292000 8475800 8221400 6754100 8625400 0 6305500 138 232 143 1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725 970;971;972 971 3 6306600 6578300 10216000 3013300 1029600 0 2797300 2624600 3052200 4301800 2772800 1115400 3162300 0 2707200 EGNDLYMEMK HGGVSVFGGVGERTREGNDLYMEMKESGVI GERTREGNDLYMEMKESGVINEQNLAESKV R E G M K E 0 0 1 1 0 0 2 1 0 0 1 1 2 0 0 0 0 0 1 0 0 0 10 0 1228.5104 P19366 P19366 208 217 atpB ATP synthase subunit beta, chloroplastic yes yes 2 3.0741E-05 53.166 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 244800000 3365100 5699400 10574000 12917000 0 0 60314000 38083000 37533000 0 12241000 38028000 0 0 26047000 139 86 144 1726;1727;1728;1729;1730;1731;1732;1733;1734;1735 973;974;975;976 973 11;12 4 3365100 5381600 6824400 6312500 0 0 9782300 7640100 8618600 0 4128300 6280000 0 0 11183000 EGPNLLK EQIFEMPTGGAAIMREGPNLLKLARKEQCL TGGAAIMREGPNLLKLARKEQCLALGTRLR R E G L K L 0 0 1 0 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 7 0 769.4334 Q9S7H1;Q9SA56 Q9S7H1 122 128 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2 0.0074503 59.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4403100000 103130000 104250000 166600000 181850000 157010000 50280000 860720000 604010000 686070000 155090000 280560000 600260000 188550000 56817000 207960000 140 202;207 145 1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750 977;978;979;980;981;982;983;984;985 977 0 103130000 98436000 107530000 88869000 96847000 49401000 139600000 121180000 157540000 78713000 94622000 99128000 69126000 53661000 89287000 EGPNLLKLAR EQIFEMPTGGAAIMREGPNLLKLARKEQCL AAIMREGPNLLKLARKEQCLALGTRLRSKY R E G A R K 1 1 1 0 0 0 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 10 1 1109.6557 Q9S7H1;Q9SA56 Q9S7H1 122 131 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2;3 5.5101E-06 86.113 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3701200000 137480000 143230000 172570000 293570000 231330000 50381000 616440000 409670000 411490000 103420000 187980000 517650000 144730000 62369000 218900000 141 202;207 146 1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775;1776;1777;1778;1779;1780 986;987;988;989;990;991;992 986 0 137480000 135240000 111380000 143460000 142690000 49501000 99982000 82188000 94491000 52488000 63397000 85485000 53060000 58904000 93983000 EGPNLLKLARK EQIFEMPTGGAAIMREGPNLLKLARKEQCL AIMREGPNLLKLARKEQCLALGTRLRSKYK R E G R K E 1 1 1 0 0 0 1 1 0 0 3 2 0 0 1 0 0 0 0 0 0 0 11 2 1237.7507 Q9S7H1;Q9SA56 Q9S7H1 122 132 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3 0.010243 57.598 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 136170000 4770900 4965800 5885500 9584900 9871500 3005100 19794000 15430000 16293000 5426900 7753600 15173000 6653500 3272900 8289100 142 202;207 147 1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795 993;994;995 995 3 4770900 4688900 3798600 4684000 6088900 2952600 3210400 3095500 3741300 2754300 2615000 2505800 2439300 3091000 3558900 EGPPVFEQPEMTYEK SLGVEKIGKRLVNSREGPPVFEQPEMTYEK EGPPVFEQPEMTYEKLMEYGNMLVMEQENV R E G E K L 0 0 0 0 0 1 4 1 0 0 0 1 1 1 3 0 1 0 1 1 0 0 15 0 1779.8026 F4IVZ7;P10896 F4IVZ7 378 392 RCA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic yes no 2 0.00013501 51.927 By MS/MS By matching By MS/MS 1 1 1 21484000 0 0 0 0 0 0 10347000 5316300 5820100 0 0 0 0 0 0 143 47 148 1796;1797;1798 996 996 7 1 0 0 0 0 0 0 1678300 1066600 1336500 0 0 0 0 0 0 EGVGLNMR HPKDGVYPEKANPGREGVGLNMRSIGKNVS EKANPGREGVGLNMRSIGKNVSPIEVKFTG R E G M R S 0 1 1 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 8 0 874.43309 Q9S7H1;Q9SA56 Q9S7H1 180 187 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2 8.1054E-06 81.297 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 128750000 6395400 6120500 5712100 6430400 4695600 2366800 11961000 11674000 9243900 3603400 9854200 37256000 5642300 0 7791000 144 202;207 149 1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812 997;998;999;1000 1000 4 6395400 5779300 3686700 3142400 2896300 2325500 1940000 2342100 2122700 1828900 3323400 6152500 2068600 0 3345000 EGVGLNMRSIGKNVSPIEVK HPKDGVYPEKANPGREGVGLNMRSIGKNVS NMRSIGKNVSPIEVKFTGKQSYDL______ R E G V K F 0 1 2 0 0 0 2 3 0 2 1 2 1 0 1 2 0 0 0 3 0 0 20 2 2126.1518 Q9S7H1;Q9SA56 Q9S7H1 180 199 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3 1.4184E-32 63.691 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 143280000 2831700 2742500 6590600 0 7586300 3441500 35498000 17085000 0 8454500 19251000 0 12784000 12956000 14062000 145 202;207 150 1813;1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824 1001;1002;1003;1004 1001 35 4 2831700 2589600 4253600 0 4679300 3381400 5757400 3427500 0 4290900 6492600 0 4686800 12237000 6037500 EILMRDSNR DCHNFMKLASKLLGKEILMRDSNRFHHFKD SKLLGKEILMRDSNRFHHFKDSSCSCNDYW K E I N R F 0 2 1 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 9 1 1132.5659 Q9C9H9 Q9C9H9 722 730 PCMP-H70 Pentatricopeptide repeat-containing protein At1g71420 yes yes 2 0.029327 50.966 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 71207000 4796600 6135700 12008000 0 0 0 17634000 14713000 14007000 0 0 0 1912500 0 0 146 174 151 1825;1826;1827;1828;1829;1830;1831 1005 1005 34 0 4796600 5793700 7750200 0 0 0 2860100 2951700 3216300 0 0 0 701150 0 0 EIVPENPNSYRAR EKFGPDRKKISVYPREIVPENPNSYRARKR PREIVPENPNSYRARKRENFRLQREKKKAR R E I A R K 1 2 2 0 0 0 2 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 13 1 1543.7743 Q9FLN4 Q9FLN4 142 154 RPL27 50S ribosomal protein L27, chloroplastic yes yes 2;3 7.9743E-06 61.435 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 947800000 24392000 27680000 31999000 99228000 39995000 18648000 133040000 102480000 90680000 52725000 54674000 164620000 41118000 14302000 52223000 147 183 152 1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861 1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021 1009 13 24392000 26137000 20653000 48491000 24669000 18322000 21577000 20560000 20823000 26760000 18440000 27185000 15075000 13508000 22422000 EIVPENPNSYRARK EKFGPDRKKISVYPREIVPENPNSYRARKR REIVPENPNSYRARKRENFRLQREKKKARR R E I R K R 1 2 2 0 0 0 2 0 0 1 0 1 0 0 2 1 0 0 1 1 0 0 14 2 1671.8693 Q9FLN4 Q9FLN4 142 155 RPL27 50S ribosomal protein L27, chloroplastic yes yes 3 0.018196 50.207 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 209200000 4036700 10325000 4126300 10768000 9557400 0 0 15960000 14255000 20901000 27558000 50079000 22216000 0 19417000 148 183 153 1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873 1022 1022 1 4036700 9749300 2663200 5261900 5895100 0 0 3201800 3273400 10608000 9294300 8270100 8145000 0 8336400 EKVNGTTVNVGIQPSK VYRRKWVIHIERITREKVNGTTVNVGIQPS KVNGTTVNVGIQPSKVVITKLRLDKDRKSL R E K S K V 0 0 2 0 0 1 1 2 0 1 0 2 0 0 1 1 2 0 0 3 0 0 16 1 1669.8999 P51414 P51414 87 102 RPL26A 60S ribosomal protein L26-1 yes yes 2;3 1.2375E-220 153.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 2 1 2 1085400000 13588000 21573000 19304000 52618000 37284000 22682000 206080000 170870000 138410000 56320000 67514000 103640000 79553000 25115000 70855000 149 111 154 1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900 1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033;1034;1035;1036;1037;1038;1039;1040;1041 1027 19 13588000 20370000 12459000 25714000 22997000 22286000 33424000 34280000 31782000 28584000 22770000 17116000 29166000 23720000 30421000 ELIEGLPKKFK KAVRALTSLALKEAKELIEGLPKKFKEGIT KEAKELIEGLPKKFKEGITKDEAEEAKKTL K E L F K E 0 0 0 0 0 0 2 1 0 1 2 3 0 1 1 0 0 0 0 0 0 0 11 2 1300.7755 P36212;P36210 P36212 152 162 RPL12C;RPL12A 50S ribosomal protein L12-3, chloroplastic;50S ribosomal protein L12-1, chloroplastic yes no 3 0.011236 54.982 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 18551000 3535500 3983700 4748100 6283600 0 0 0 0 0 0 0 0 0 0 0 150 97 155 1901;1902;1903;1904 1042;1043 1043 2 3535500 3761600 3064500 3070700 0 0 0 0 0 0 0 0 0 0 0 EMPIVGGSGLFRFAR TITILGRNTALSEVREMPIVGGSGLFRFAR EMPIVGGSGLFRFARGYVEARTKWINLKNG R E M A R G 1 2 0 0 0 0 1 3 0 1 1 0 1 2 1 1 0 0 0 1 0 0 15 1 1635.8555 Q9C891 Q9C891 145 159 DIR20 Dirigent protein 20 yes yes 3 2.6965E-07 60.628 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 100580000 3069400 4041000 7096500 7809000 5096200 3076800 18553000 16708000 8809000 5319800 0 20998000 0 0 0 151 173 156 1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915 1044;1045;1046;1047 1045 33 4 3069400 3815700 4580200 3816100 3143400 3023000 3009200 3351900 2022800 2700000 0 3467700 0 0 0 ENVKNTAASVGEITLK ALPAGGRGDEEELVKENVKNTAASVGEITL NVKNTAASVGEITLKVTKSKPETGEVIGVF K E N L K V 2 0 2 0 0 0 2 1 0 1 1 2 0 0 0 1 2 0 0 2 0 0 16 1 1672.8996 P23321;Q9S841 P23321 273 288 PSBO1;PSBO2 Oxygen-evolving enhancer protein 1-1, chloroplastic;Oxygen-evolving enhancer protein 1-2, chloroplastic no no 2;3 1.1327E-43 109.42 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 2 2 2 1 1 2 1 1 2 320620000 10367000 8822400 10635000 17001000 6416900 2241600 59539000 59924000 53826000 7839000 11769000 34535000 13530000 4877500 19300000 152 87;206 157 1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938 1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058 1056 11 10367000 8330500 6863800 8308100 3958000 2202400 9656700 12022000 12360000 3978600 3969100 5703100 4960500 4606500 8286400 EQIFEMPTGGAAIMR AQVEEFYVITWNSPKEQIFEMPTGGAAIMR EQIFEMPTGGAAIMREGPNLLKLARKEQCL K E Q M R E 2 1 0 0 0 1 2 2 0 2 0 0 2 1 1 0 1 0 0 0 0 0 15 0 1649.7905 Q9S7H1;Q9SA56 Q9S7H1 107 121 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2 3.522E-21 90.906 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 96196000 2025200 4110900 3713700 11147000 6038900 0 24208000 15096000 16974000 0 5965400 0 0 1957100 4959600 153 202;207 158 1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949 1059 1059 36;37 1 2025200 3881700 2396800 5447200 3724900 0 3926300 3028600 3897700 0 2011900 0 0 1848400 2129400 EQPPQVGKVIGK AKQQRWEVPYNLLPREQPPQVGKVIGKSRK LPREQPPQVGKVIGKSRKSPITVQEISGSE R E Q G K S 0 0 0 0 0 2 1 2 0 1 0 2 0 0 2 0 0 0 0 2 0 0 12 1 1278.7296 Q9S7Y7 Q9S7Y7 102 113 XYL1 Alpha-xylosidase 1 yes yes 2;3 1.6064E-05 53.17 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 2 2 1 1 2 122740000 1080300 2330600 3209700 7880700 7400500 0 8337800 9085600 5515500 6082100 13569000 43697000 6003000 1717500 6832300 154 204 159 1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968 1060;1061;1062;1063;1064;1065;1066 1062 6 1080300 2200700 2071600 3851200 4564700 0 1352300 1822700 1266500 3086900 4576200 7216100 2200800 1622100 2933400 ESAGASSSSVAEFSMFIKK SHNSKRTDKVFSVQRESAGASSSSVAEFSM ASSSSVAEFSMFIKKSYLIYMWFPKSVQSI R E S K K S 3 0 0 0 0 0 2 1 0 1 0 2 1 2 0 6 0 0 0 1 0 0 19 1 1961.9404 Q5PNU4 Q5PNU4 186 204 B3 domain-containing protein At2g35310 yes yes 3 0.00092368 41.871 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 184130000 0 0 0 8621700 6605900 4649900 18602000 25438000 9266100 18687000 38734000 0 22931000 9928200 20665000 155 150 160 1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979 1067;1068;1069;1070;1071 1067 5 0 0 0 4213300 4074600 4568700 3017000 5103300 2127800 9484300 13063000 0 8407100 9376700 8872200 EVAGMAPYEK GKTSKRTIFIRKLIREVAGMAPYEKRITEL RKLIREVAGMAPYEKRITELLKVGKDKRAL R E V E K R 2 0 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 10 0 1093.5114 O80929 O80929 49 58 RPL36A 60S ribosomal protein L36-1 yes yes 2 1.926E-05 71.342 By matching By MS/MS By matching By matching 1 1 1 1 29702000 0 0 0 0 2863000 0 11692000 8652800 6493400 0 0 0 0 0 0 156 77 161 1980;1981;1982;1983 1072 1072 9 1 0 0 0 0 1765900 0 1896400 1735900 1491100 0 0 0 0 0 0 FAAYEKKYPEEASELK HTPEGATLESDWSAKFAAYEKKYPEEASEL AAYEKKYPEEASELKSIITGELPAGWEKAL K F A L K S 3 0 0 0 0 0 4 0 0 0 1 3 0 1 1 1 0 0 2 0 0 0 16 2 1901.9411 F4JBY2;Q8RWV0 F4JBY2 390 405 At3g60750;TKL-1 Transketolase-1, chloroplastic yes no 4 0.018935 28.812 By MS/MS By MS/MS By matching 1 1 1 11224000 0 2311000 5522800 0 0 0 0 3389900 0 0 0 0 0 0 0 157 54 162 1984;1985;1986 1073 1073 1 0 2182100 3564500 0 0 0 0 680070 0 0 0 0 0 0 0 FALSKGWVIEK GNGTMKMWSQVKEGKFALSKGWVIEKVSVL KEGKFALSKGWVIEKVSVLGLRGAGQVSEI K F A E K V 1 0 0 0 0 0 1 1 0 1 1 2 0 1 0 1 0 1 0 1 0 0 11 1 1276.718 Q9S7Y7 Q9S7Y7 833 843 XYL1 Alpha-xylosidase 1 yes yes 3 0.021777 53.317 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 21810000 690170 502830 0 0 0 1102100 0 0 0 3883400 3021900 7425700 3686800 1496700 0 158 204 163 1987;1988;1989;1990;1991;1992;1993;1994 1074 1074 1 690170 474790 0 0 0 1082800 0 0 0 1971000 1019200 1226300 1351700 1413600 0 FFETFAAPFTK YGSDAPSPYNPLQSKFFETFAAPFTKRGLL LQSKFFETFAAPFTKRGLLLKFLILGGGSL K F F T K R 2 0 0 0 0 0 1 0 0 0 0 1 0 4 1 0 2 0 0 0 0 0 11 0 1304.6441 Q9SUI7;Q9SUI6 Q9SUI7 89 99 PSAH1;PSAH2 Photosystem I reaction center subunit VI-1, chloroplastic;Photosystem I reaction center subunit VI-2, chloroplastic yes no 2 7.7335E-06 72.485 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 15138000 0 0 0 0 0 0 5247100 4068200 3672000 0 0 0 0 0 2150500 159 223 164 1995;1996;1997;1998 1075;1076 1075 0 0 0 0 0 0 0 851030 816170 843190 0 0 0 0 0 923300 FFETFAAPFTKR YGSDAPSPYNPLQSKFFETFAAPFTKRGLL QSKFFETFAAPFTKRGLLLKFLILGGGSLL K F F K R G 2 1 0 0 0 0 1 0 0 0 0 1 0 4 1 0 2 0 0 0 0 0 12 1 1460.7452 Q9SUI7;Q9SUI6 Q9SUI7 89 100 PSAH1;PSAH2 Photosystem I reaction center subunit VI-1, chloroplastic;Photosystem I reaction center subunit VI-2, chloroplastic yes no 3 0.0014111 58.676 By MS/MS By MS/MS By MS/MS 1 1 1 21103000 0 0 0 0 0 0 9519700 6647700 4935900 0 0 0 0 0 0 160 223 165 1999;2000;2001 1077;1078;1079 1077 3 0 0 0 0 0 0 1544000 1333700 1133400 0 0 0 0 0 0 FFETFAAPFTKRGLLLK YGSDAPSPYNPLQSKFFETFAAPFTKRGLL ETFAAPFTKRGLLLKFLILGGGSLLTYVSA K F F L K F 2 1 0 0 0 0 1 1 0 0 3 2 0 4 1 0 2 0 0 0 0 0 17 2 1985.1139 Q9SUI7;Q9SUI6 Q9SUI7 89 105 PSAH1;PSAH2 Photosystem I reaction center subunit VI-1, chloroplastic;Photosystem I reaction center subunit VI-2, chloroplastic yes no 3;4 7.5117E-22 68.972 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 2 1 2 453760000 778010 1591100 2255500 0 0 0 367520000 25418000 32818000 0 0 0 2541300 0 20839000 161 223 166 2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012;2013;2014 1080;1081;1082;1083;1084 1083 5 778010 1502400 1455700 0 0 0 59609000 5099300 7536000 0 0 0 931710 0 8947000 FGLAPSANR LIMVTSTTLMLFAGRFGLAPSANRKATAGL MLFAGRFGLAPSANRKATAGLRLEARDSGL R F G N R K 2 1 1 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 931.48756 Q9SUI5 Q9SUI5 70 78 PSAK Photosystem I reaction center subunit psaK, chloroplastic yes yes 2 0.015738 60.788 By matching By MS/MS By matching By MS/MS 1 1 1 1 9363900 873080 1818000 1380000 5292800 0 0 0 0 0 0 0 0 0 0 0 162 222 167 2015;2016;2017;2018 1085 1085 0 873080 1716700 890690 2586500 0 0 0 0 0 0 0 0 0 0 0 FGLAPSANRKATAGLR LIMVTSTTLMLFAGRFGLAPSANRKATAGL GLAPSANRKATAGLRLEARDSGLQTGDPAG R F G L R L 4 2 1 0 0 0 0 2 0 0 2 1 0 1 1 1 1 0 0 0 0 0 16 2 1628.9111 Q9SUI5 Q9SUI5 70 85 PSAK Photosystem I reaction center subunit psaK, chloroplastic yes yes 4 0.016547 38.511 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 194440000 3193300 4717200 4189700 10547000 7553600 2295200 46588000 42868000 33724000 3996800 7127700 15659000 3922800 0 8060500 163 222 168 2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033 1086;1087;1088 1087 3 3193300 4454200 2704100 5154000 4659100 2255100 7556200 8600100 7743900 2028500 2403900 2585900 1438200 0 3460700 FGQTFMGKNFRV RRSSTSWNIAPANWKFGQTFMGKNFRV___ NWKFGQTFMGKNFRV_______________ K F G R V - 0 1 1 0 0 1 0 2 0 0 0 1 1 3 0 0 1 0 0 1 0 0 12 2 1430.7129 Q38865 Q38865 246 257 EXPA6 Expansin-A6 yes yes 3 0.0047278 58.246 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 2 1 3 1 1 1 1 1 1 181960000 7342500 10884000 18405000 8879700 8745700 2171500 42851000 13985000 26895000 5111400 6154100 15386000 5315900 2569300 7265700 164 144 169;170 2034;2035;2036;2037;2038;2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049;2050;2051;2052;2053;2054;2055;2056 1089;1090;1091;1092;1093;1094;1095 1095 30 6 7342500 10277000 11879000 4339400 5394500 2133500 6950000 2805700 6175900 2594200 2075500 2540900 1948900 2426600 3119500 FIDTASIFGHGRFQTSLEK LTQTSRLALEEIKLKFIDTASIFGHGRFQT ASIFGHGRFQTSLEKMRFYNRVTK______ K F I E K M 1 1 0 1 0 1 1 2 1 2 1 1 0 3 0 2 2 0 0 0 0 0 19 1 2153.0906 A8MQQ1;P17094 A8MQQ1 279 297 RP1;ARP1 60S ribosomal protein L3-1 yes no 4 0.00091758 33.307 By MS/MS By matching By MS/MS 1 1 1 13358000 0 0 0 0 0 0 6913600 3703000 2740900 0 0 0 0 0 0 165 23 171 2057;2058;2059 1096 1096 1 0 0 0 0 0 0 1121300 742890 629390 0 0 0 0 0 0 FLVPSYRGSSFLDPKGR KQLDASGKPDSFTGKFLVPSYRGSSFLDPK VPSYRGSSFLDPKGRGGSTGYDNAVALPAG K F L G R G 0 2 0 1 0 0 0 2 0 0 2 1 0 2 2 3 0 0 1 1 0 0 17 2 1925.0159 P23321;Q9S841 P23321 231 247 PSBO1;PSBO2 Oxygen-evolving enhancer protein 1-1, chloroplastic;Oxygen-evolving enhancer protein 1-2, chloroplastic no no 4 4.8717E-06 57.159 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 68552000 0 824020 1309600 3207000 3907300 2449800 8902300 8458500 8470700 5575900 7980200 8565100 5681200 0 3220200 166 87;206 172 2060;2061;2062;2063;2064;2065;2066;2067;2068;2069;2070;2071;2072 1097;1098;1099;1100;1101;1102;1103 1098 7 0 778080 845210 1567200 2410100 2407000 1443900 1696900 1945100 2830000 2691400 1414500 2082800 0 1382600 FSLAPLVPR ILSTHLGRPKGVTPKFSLAPLVPRLSELLG KGVTPKFSLAPLVPRLSELLGIEVVKADDC K F S P R L 1 1 0 0 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 9 0 998.5913 F4I3L1;P50318 F4I3L1 74 82 At1g56190 Phosphoglycerate kinase;Phosphoglycerate kinase 2, chloroplastic no no 2 7.145E-09 106.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 95050000 11428000 12100000 9883200 5643900 2531300 1641700 10444000 8065600 5708900 2912700 4124700 8452500 5195000 3299600 3618200 167 37 173 2073;2074;2075;2076;2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088;2089 1104;1105;1106;1107;1108;1109;1110;1111 1111 5 11428000 11426000 6378800 2758100 1561400 1613000 1694000 1618100 1310900 1478300 1391100 1395900 1904600 3116300 1553400 FSRSPYQEHTDFLASK KTYGFLTPEFWKETRFSRSPYQEHTDFLAS SRSPYQEHTDFLASKALSTSKPDPVVEDQA R F S S K A 1 1 0 1 0 1 1 0 1 0 1 1 0 2 1 3 1 0 1 0 0 0 16 1 1911.9115 P49688 P49688 255 270 RPS2C 40S ribosomal protein S2-3 yes yes 4 9.6216E-25 65.956 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58634000 2401400 3705400 4017700 0 0 0 18523000 13029000 16957000 0 0 0 0 0 0 168 109 174 2090;2091;2092;2093;2094;2095 1112;1113 1113 2 2401400 3498800 2593100 0 0 0 3004300 2613800 3893900 0 0 0 0 0 0 FTGKQSYDL NMRSIGKNVSPIEVKFTGKQSYDL______ SPIEVKFTGKQSYDL_______________ K F T D L - 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 1 1 0 1 0 0 0 9 1 1057.508 Q9S7H1;Q9SA56 Q9S7H1 200 208 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2 3.4339E-60 135.6 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 393970000 35998000 41429000 62625000 13900000 5826800 0 80168000 38761000 45438000 5272000 9436400 22447000 10395000 3412500 18856000 169 202;207 175 2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109 1114;1115 1114 0 35998000 39119000 40419000 6792900 3594000 0 13003000 7776100 10434000 2675700 3182500 3706900 3811100 3222900 8095800 FVESLGVEK FGALRARVYDDEVRKFVESLGVEKIGKRLV DDEVRKFVESLGVEKIGKRLVNSREGPPVF K F V E K I 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 1 0 0 0 2 0 0 9 0 1006.5335 F4IVZ7;P10896 F4IVZ7 360 368 RCA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic yes no 2 0.0017028 84.244 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 1 1 1 1 83609000 0 3060900 4019900 6342700 0 0 15700000 9296700 11669000 0 7651800 10816000 6342900 2497400 6211400 170 47 176 2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122 1116;1117;1118;1119;1120;1121 1120 6 0 2890200 2594500 3099600 0 0 2546500 1865100 2679500 0 2580600 1786100 2325500 2358700 2666800 FYLQPLPPTEAAARAKESAK NSDQARDFALALKDRFYLQPLPPTEAAARA LPPTEAAARAKESAKDIINVKPLIDRKAWP R F Y A K D 5 1 0 0 0 1 2 0 0 0 2 2 0 1 3 1 1 0 1 0 0 0 20 2 2187.1688 Q9XFT3 Q9XFT3 113 132 PSBQ1 Oxygen-evolving enhancer protein 3-1, chloroplastic yes yes 3;4 1.8361E-32 65.716 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1 1 1 1 2 149370000 2151500 0 3878800 22058000 0 0 23584000 9974000 12135000 6920000 15153000 53514000 0 0 0 171 231 177 2123;2124;2125;2126;2127;2128;2129;2130;2131;2132;2133;2134 1122;1123;1124;1125;1126;1127;1128;1129;1130 1127 9 2151500 0 2503400 10779000 0 0 3825100 2001000 2786500 3512100 5110500 8837400 0 0 0 GAFRFHQYQVVGR ______________________________ ______________________________ M G A G R A 1 2 0 0 0 2 0 2 1 0 0 0 0 2 0 0 0 0 1 2 0 0 13 1 1563.8059 P51418 P51418 2 14 RPL18AB 60S ribosomal protein L18a-2 yes yes 2;3;4 1.3286E-32 91.041 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 5 3 4 2 2 1 2 2 2 937640000 11708000 21506000 39694000 12051000 9183900 0 320290000 227300000 202750000 9361600 13746000 14137000 21187000 9300100 25430000 172 112 178 2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167 1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145 1145 15 11708000 20307000 25619000 5889200 5664800 0 51948000 45601000 46556000 4751300 4636100 2334500 7767500 8783500 10918000 GAFRFHQYQVVGRALPTEK ______________________________ FHQYQVVGRALPTEKDVQPKIYRMKLWATN M G A E K D 2 2 0 0 0 2 1 2 1 0 1 1 0 2 1 0 1 0 1 2 0 0 19 2 2203.1651 P51418 P51418 2 20 RPL18AB 60S ribosomal protein L18a-2 yes yes 3;4;5 4.7959E-39 71.531 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 3 3 3 3 1 1 440950000 6775000 9765300 32906000 0 0 0 128840000 129540000 123440000 0 0 0 2275900 7411700 0 173 112 179 2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183 1146;1147;1148;1149;1150;1151;1152;1153;1154;1155;1156 1151 10 6775000 9220900 21238000 0 0 0 20896000 25988000 28345000 0 0 0 834410 7000000 0 GALDGGLDIPHSDKR LIRTTTGNRVFGALKGALDGGLDIPHSDKR GALDGGLDIPHSDKRFAGFHKENKQLDAEI K G A K R F 1 1 0 3 0 0 0 3 1 1 2 1 0 0 1 1 0 0 0 0 0 0 15 1 1549.7849 F4J912;Q8LBI1;P49227 F4J912 53 67 ATL5;RPL5B 60S ribosomal protein L5-1;60S ribosomal protein L5-2 yes no 2;3;4 0.0055215 64.297 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 3 2 2 2 2 2 2 478760000 4123900 7219100 9719200 13166000 9045500 5575300 137910000 59687000 70930000 16327000 21417000 33537000 42325000 15720000 32061000 174 53 180 2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215 1157;1158;1159;1160;1161;1162;1163;1164;1165 1164 9 4123900 6816600 6272900 6433900 5579300 5477900 22367000 11974000 16288000 8286700 7223200 5538400 15517000 14847000 13765000 GALPGKPGNLLR KIVKVDKELNVVMIKGALPGKPGNLLRITP MIKGALPGKPGNLLRITPAKIVGVNIPKN_ K G A L R I 1 1 1 0 0 0 0 3 0 0 3 1 0 0 2 0 0 0 0 0 0 0 12 1 1191.7088 Q9SKX4 Q9SKX4 246 257 RPL3A 50S ribosomal protein L3-1, chloroplastic yes yes 2 0.0098939 32.61 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 20082000 0 0 0 0 0 0 6168000 6071300 6286900 0 0 0 0 0 1555700 175 215 181 2216;2217;2218;2219 1166 1166 1 0 0 0 0 0 0 1000400 1218000 1443700 0 0 0 0 0 667940 GARKFVESAATSFSVA LYICKAQAGDKRWFKGARKFVESAATSFSV ARKFVESAATSFSVA_______________ K G A V A - 4 1 0 0 0 0 1 1 0 0 0 1 0 2 0 3 1 0 0 2 0 0 16 2 1626.8366 Q42029 Q42029 248 263 PSBP1 Oxygen-evolving enhancer protein 2-1, chloroplastic yes yes 2 0.010118 51.436 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49693000 5381900 3880500 7470500 0 0 0 13677000 7370200 11913000 0 0 0 0 0 0 176 146 182 2220;2221;2222;2223;2224;2225 1167;1168 1167 2 5381900 3664200 4821600 0 0 0 2218300 1478600 2735500 0 0 0 0 0 0 GFGFVTFKDEK IDSKIINDRESGRSRGFGFVTFKDEKAMRD GRSRGFGFVTFKDEKAMRDAIEEMNGKELD R G F E K A 0 0 0 1 0 0 1 2 0 0 0 2 0 3 0 0 1 0 0 1 0 0 11 1 1273.6343 F4JVC0;F4JVB9;F4JVC1;F4IHK9;Q03251;Q03250 F4JVC0 48 58 CCR1;CCR2;RBG8;RBG7 Glycine-rich RNA-binding protein 8;Glycine-rich RNA-binding protein 7 yes no 3 0.0090188 52.79 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 28349000 5690400 5147000 7719400 0 0 0 4622000 5169900 0 0 0 0 0 0 0 177 43 183 2226;2227;2228;2229;2230 1169;1170 1169 2 5690400 4860000 4982200 0 0 0 749650 1037200 0 0 0 0 0 0 0 GGFRFHQYQVVGR ______________________________ ______________________________ M G G G R A 0 2 0 0 0 2 0 3 1 0 0 0 0 2 0 0 0 0 1 2 0 0 13 1 1549.7902 Q9LUD4 Q9LUD4 2 14 RPL18AC 60S ribosomal protein L18a-3 yes yes 3;4 7.0864E-33 70.17 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 40635000 0 0 1938900 0 0 0 10971000 19833000 7892000 0 0 0 0 0 0 178 192 184 2231;2232;2233;2234;2235 1171;1172;1173;1174 1172 3 0 0 1251400 0 0 0 1779300 3978900 1812200 0 0 0 0 0 0 GGLGVGAFRR YYIRAASMARKVYLRGGLGVGAFRRIYGGS KVYLRGGLGVGAFRRIYGGSKRNGSRPPHF R G G R R I 1 2 0 0 0 0 0 4 0 0 1 0 0 1 0 0 0 0 0 1 0 0 10 1 988.55665 Q9SGA6;Q9LF30;Q9FNP8 Q9SGA6 69 78 RPS19A;RPS19B;RPS19C 40S ribosomal protein S19-1;40S ribosomal protein S19-2;40S ribosomal protein S19-3 no no 2 0.013828 44.531 By MS/MS By MS/MS By MS/MS 1 1 1 155240000 0 0 0 0 0 0 58251000 46836000 50150000 0 0 0 0 0 0 179 210;185 185 2236;2237;2238 1175 1175 1 0 0 0 0 0 0 9447700 9396100 11516000 0 0 0 0 0 0 GGVISFSKTAAR GLIGNIGQANYAAAKGGVISFSKTAAREGA AAKGGVISFSKTAAREGASRNINVNVVCPG K G G A R E 2 1 0 0 0 0 0 2 0 1 0 1 0 1 0 2 1 0 0 1 0 0 12 1 1192.6564 P33207 P33207 231 242 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic yes yes 2;3 0.0031486 65.246 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 1 2 2 1 2 2 1 1 2 138660000 0 2356200 3446400 12051000 4801200 5309000 9728000 15325000 8880700 4424200 12774000 45580000 2780500 1403800 9800700 180 94 186 2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261 1176;1177;1178 1177 3 0 2224800 2224400 5888900 2961400 5216300 1577800 3074400 2039300 2245400 4308200 7527200 1019400 1325800 4207900 GIDLIAGGK ______________________________ ______________________________ M G I G K S 1 0 0 1 0 0 0 3 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 842.48617 Q940B0;P42791;O22254 Q940B0 2 10 RPL18C;RPL18B;RPL18A 60S ribosomal protein L18-3;60S ribosomal protein L18-2;Putative 60S ribosomal protein L18-1 yes no 2 0.0067197 72.021 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 91699000 0 0 0 4127700 4119000 3582900 0 7842500 0 9867300 9693500 16244000 17093000 6657400 12473000 181 100 187 2262;2263;2264;2265;2266;2267;2268;2269;2270;2271 1179;1180;1181 1179 3 0 0 0 2017100 2540700 3520300 0 1573300 0 5008000 3269200 2682500 6266600 6287600 5355000 GIVYGKPTNQGVTQLK RVRVRRGGRKRPVPKGIVYGKPTNQGVTQL IVYGKPTNQGVTQLKFQRSKRSVAEERAGR K G I L K F 0 0 1 0 0 2 0 3 0 1 1 2 0 0 1 0 2 0 1 2 0 0 16 1 1701.9414 Q8VYF1;O23515 Q8VYF1 78 93 RPL15B;RPL15A 60S ribosomal protein L15-2;60S ribosomal protein L15-1 yes no 3 1.1174E-38 87.498 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 175180000 1542300 2511100 3778300 5745600 4244100 0 52665000 27558000 32559000 6193500 5296300 10002000 9766100 3842900 9473000 182 69 188 2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286 1182;1183;1184;1185;1186 1186 5 1542300 2371100 2438600 2807800 2617800 0 8541800 5528600 7476600 3143400 1786200 1651700 3580500 3629500 4067200 GIYPAVDPLDSTSTMLQPR HLDATTVLSRGLAAKGIYPAVDPLDSTSTM AVDPLDSTSTMLQPRIVGEEHYETAQQVKQ K G I P R I 1 1 0 2 0 1 0 1 0 1 2 0 1 0 3 2 2 0 1 1 0 0 19 0 2060.0248 P19366 P19366 360 378 atpB ATP synthase subunit beta, chloroplastic yes yes 2;3 1.9871E-21 69.01 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 2 1 1 2 2 69837000 2043200 2139300 0 2534600 2304200 0 8614800 11905000 12205000 0 6599400 9064300 7952600 4474400 0 183 86 189 2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301 1187;1188 1188 13 2 2043200 2020000 0 1238600 1421300 0 1397200 2388400 2802600 0 2225700 1496900 2915600 4225800 0 GLAAKGIYPAVDPLDSTSTMLQPR ATTFAHLDATTVLSRGLAAKGIYPAVDPLD AVDPLDSTSTMLQPRIVGEEHYETAQQVKQ R G L P R I 3 1 0 2 0 1 0 2 0 1 3 1 1 0 3 2 2 0 1 1 0 0 24 1 2500.2996 P19366 P19366 355 378 atpB ATP synthase subunit beta, chloroplastic yes yes 3 3.7997E-53 63.578 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 2 62405000 4806200 8564000 12311000 3880400 9665500 581650 10900000 0 5715400 0 0 0 5980900 0 0 184 86 190;191 2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313 1189;1190;1191;1192;1193 1192 13 5 4806200 8086500 7945700 1896300 5961800 571490 1767900 0 1312400 0 0 0 2192700 0 0 GLAGSGNPAYPGGPFFNPLGFGKDEK NPGSMGKQYFLGLEKGLAGSGNPAYPGGPF GGPFFNPLGFGKDEKSLKELKLKEVKNGRL K G L E K S 2 0 2 1 0 0 1 7 0 0 2 2 0 3 4 1 0 0 1 0 0 0 26 1 2593.2601 Q9SY97 Q9SY97 191 216 T25B24.12 yes yes 3 0.0090135 25.604 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 72633000 0 0 0 1665700 1373700 0 12431000 9874700 6863800 3561300 6420500 6563700 9587700 6838300 7452800 185 225 192 2314;2315;2316;2317;2318;2319;2320;2321;2322;2323;2324 1194 1194 1 0 0 0 814000 847320 0 2016200 1981000 1576100 1807500 2165400 1083900 3515100 6458400 3199800 GLDEKELAALASVGELK LDKHGSERCSLGDAKGLDEKELAALASVGE DEKELAALASVGELKMNSLTMHQASNIGYK K G L L K M 3 0 0 1 0 0 3 2 0 0 4 2 0 0 0 1 0 0 0 1 0 0 17 1 1741.9462 Q9XFI1 Q9XFI1 204 220 Thioredoxin-like 1-2, chloroplastic yes yes 3 0.013517 28.089 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 2 1 1 2 1 2 1667200000 24379000 20488000 38096000 44691000 41314000 22528000 318760000 122080000 95661000 147780000 107320000 122440000 355670000 27008000 178940000 186 230 193 2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345;2346;2347;2348 1195;1196 1195 2 24379000 19345000 24588000 21840000 25483000 22135000 51700000 24492000 21967000 75002000 36194000 20220000 130400000 25507000 76828000 GLLSLCNELR GCFRVHNEVAKAFNKGLLSLCNELRSQFKD KAFNKGLLSLCNELRSQFKDATLVYVDIYS K G L L R S 0 1 1 0 1 0 1 1 0 0 4 0 0 0 0 1 0 0 0 0 0 0 10 0 1116.5961 A0A1I9LNY1;Q6NLP7 A0A1I9LNY1 254 263 GDSL esterase/lipase At3g62280 yes no 2 0.00028067 67.032 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187 1 194 2349 1197 1197 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 GPAKFRSLDFGER KGAGSVFKSHTHHRKGPAKFRSLDFGERNG RKGPAKFRSLDFGERNGYLKGVVTEIIHDP K G P E R N 1 2 0 1 0 0 1 2 0 0 1 1 0 2 1 1 0 0 0 0 0 0 13 2 1478.763 P46286;Q42064 P46286 25 37 RPL8A;RPL8C 60S ribosomal protein L8-1;60S ribosomal protein L8-3 no no 3 1.4826E-31 84.479 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 147370000 11493000 10629000 25975000 0 0 0 44812000 31018000 23448000 0 0 0 0 0 0 188 104;147 195 2350;2351;2352;2353;2354;2355 1198;1199;1200;1201 1200 4 11493000 10036000 16764000 0 0 0 7268000 6222700 5384300 0 0 0 0 0 0 GPAPLSLALAHADIDEAGK PCHGSQYNAQGRVVRGPAPLSLALAHADID LSLALAHADIDEAGKVLFVPWVETDFRTGD R G P G K V 5 0 0 2 0 0 1 2 1 1 3 1 0 0 2 1 0 0 0 0 0 0 19 0 1844.9632 Q9ZR03 Q9ZR03 191 209 petC Cytochrome b6-f complex iron-sulfur subunit, chloroplastic yes yes 3 0.0054513 31.801 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 12808000 2310600 2908300 5386600 0 0 0 0 0 0 0 0 0 0 0 2202300 189 233 196 2356;2357;2358;2359 1202 1202 1 2310600 2746100 3476600 0 0 0 0 0 0 0 0 0 0 0 945530 GPGGDVAPVAAPAPAATPAPTAAVPKKK SRERKHARREERLAKGPGGDVAPVAAPAPA PAATPAPTAAVPKKKSKK____________ K G P K K S 9 0 0 1 0 0 0 3 0 0 0 3 0 0 7 0 2 0 0 3 0 0 28 2 2506.3908 Q9SRX2 Q9SRX2 184 211 RPL19A 60S ribosomal protein L19-1 yes yes 4 0.020403 21.667 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 39153000 0 0 0 2474200 0 3063500 11055000 7186400 8277800 0 0 7096700 0 0 0 190 221 197 2360;2361;2362;2363;2364;2365 1203 1203 1 0 0 0 1209100 0 3009900 1793000 1441700 1900800 0 0 1172000 0 0 0 GPNGLDLSRLK MRFWDLRAPWLEPLRGPNGLDLSRLKKDIQ EPLRGPNGLDLSRLKKDIQPWQERRSAEYM R G P L K K 0 1 1 1 0 0 0 2 0 0 3 1 0 0 1 1 0 0 0 0 0 0 11 1 1168.6564 P56778 P56778 371 381 psbC Photosystem II CP43 reaction center protein yes yes 2;3 2.3149E-07 84.213 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 3 2 2 2 2 2 2 377880000 5168500 4559100 4077000 8522500 5051900 2622100 61127000 67929000 76976000 13357000 19724000 34610000 32893000 13160000 28099000 191 121 198 2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388;2389;2390;2391 1204;1205;1206;1207;1208;1209;1210;1211;1212;1213 1209 10 5168500 4304900 2631400 4164800 3116100 2576300 9914300 13628000 17676000 6779300 6652100 5715600 12059000 12429000 12064000 GPNGLDLSRLKK MRFWDLRAPWLEPLRGPNGLDLSRLKKDIQ PLRGPNGLDLSRLKKDIQPWQERRSAEYMT R G P K K D 0 1 1 1 0 0 0 2 0 0 3 2 0 0 1 1 0 0 0 0 0 0 12 2 1296.7514 P56778 P56778 371 382 psbC Photosystem II CP43 reaction center protein yes yes 3 2.5541E-09 83.499 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 223720000 0 0 0 5007800 4203700 0 37725000 39583000 39786000 6204100 13875000 18936000 25474000 8883400 24046000 192 121 199 2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402 1214;1215;1216 1216 3 0 0 0 2447200 2592900 0 6118700 7941000 9136100 3148800 4679500 3127200 9339400 8389900 10324000 GPQEPPKLGPR YVSATSTGEVLPIKRGPQEPPKLGPRGKL_ PIKRGPQEPPKLGPRGKL____________ R G P P R G 0 1 0 0 0 1 1 2 0 0 1 1 0 0 4 0 0 0 0 0 0 0 11 1 1174.6459 Q9SUI7;Q9SUI6 Q9SUI7 132 142 PSAH1;PSAH2 Photosystem I reaction center subunit VI-1, chloroplastic;Photosystem I reaction center subunit VI-2, chloroplastic yes no 3 0.0088869 36.334 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 246950000 0 0 0 0 20681000 13584000 26218000 1034100 43291000 0 31446000 84093000 0 0 26600000 193 223 200 2403;2404;2405;2406;2407;2408;2409;2410 1217;1218;1219;1220;1221;1222 1221 6 0 0 0 0 12756000 13346000 4252400 207450 9941000 0 10606000 13887000 0 0 11421000 GPSGSPWYGSDR GSGRVTMRKTVAKPKGPSGSPWYGSDRVKY KPKGPSGSPWYGSDRVKYLGPFSGEPPSYL K G P D R V 0 1 0 1 0 0 0 3 0 0 0 0 0 0 2 3 0 1 1 0 0 0 12 0 1264.5473 Q39141;Q8VZ87;P0CJ48;P04778 Q39141 42 53 Lhb1B2;LHCB1.2;LHCB1.1;LHCB1.3 Chlorophyll a-b binding protein 3, chloroplastic;Chlorophyll a-b binding protein 2, chloroplastic;Chlorophyll a-b binding protein 1, chloroplastic yes no 2 0.0074326 55.37 By MS/MS By MS/MS 1 1 18915000 0 0 0 0 0 0 0 0 0 0 3582200 15332000 0 0 0 194 80 201 2411;2412 1223 1223 1 0 0 0 0 0 0 0 0 0 0 1208100 2532000 0 0 0 GQKINPLGFR ______________________________ ______________________________ M G Q F R L 0 1 1 0 0 1 0 2 0 1 1 1 0 1 1 0 0 0 0 0 0 0 10 1 1128.6404 P56798 P56798 2 11 rps3 30S ribosomal protein S3, chloroplastic yes yes 3 0.003123 50.607 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 67090000 3559000 4165300 4995300 5170400 0 1260400 14686000 7677600 10744000 0 2767200 5784400 3363900 0 2916500 195 125 202 2413;2414;2415;2416;2417;2418;2419;2420;2421;2422;2423;2424 1224;1225 1225 1 3559000 3933100 3224000 2526700 0 1238300 2381900 1540300 2467200 0 933280 955250 1233300 0 1252200 GQSPLTSLTQRMEKICDVTR DAGVEASICEGGFTKGQSPLTSLTQRMEKI TSLTQRMEKICDVTRAIIRMLL________ K G Q T R A 0 2 0 1 1 2 1 1 0 1 2 1 1 0 1 2 3 0 0 1 0 0 20 2 2262.146 F4J405 F4J405 86 105 At3g17140 yes yes 4 0.004696 4.1063 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 168830000 34265000 30307000 34308000 0 0 0 0 52801000 6773900 0 0 0 0 0 10377000 196 52 203 2425;2426;2427;2428;2429;2430 1226 1226 1 34265000 28617000 22143000 0 0 0 0 10593000 1555500 0 0 0 0 0 4455400 GRLPDGTLIAVK PLNKIGEGGFGSVYKGRLPDGTLIAVKKLS VYKGRLPDGTLIAVKKLSSKSHQGNKEFVN K G R V K K 1 1 0 1 0 0 0 2 0 1 2 1 0 0 1 0 1 0 0 1 0 0 12 1 1238.7347 A0A1P8AUL0;A0A1P8AUP1;F4I336;A0A1P8AUL5 A0A1P8AUL0 657 668 At1g29730 yes no 2 0.00011172 61.999 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 74236000 2255400 2214400 3373800 5051700 0 0 11665000 9674400 8152800 3265900 5045600 11528000 5532800 2679600 3796200 197 9 204 2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443 1227;1228;1229;1230;1231 1227 3 2255400 2090900 2177500 2468700 0 0 1892000 1940900 1872100 1657600 1701700 1903700 2028400 2530800 1629900 GVTKKPDLNDPVLR ______________________________ MGVTKKPDLNDPVLRAKLAKGMGHNYYGEP M G V L R A 0 1 1 2 0 0 0 1 0 0 2 2 0 0 2 0 1 0 0 2 0 0 14 2 1550.878 P56774 P56774 2 15 petD Cytochrome b6-f complex subunit 4 yes yes 3;4 1.6446E-13 64.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 2 2 2 1 1 1 1 1 364560000 6955400 12482000 26736000 22421000 11478000 4965500 35695000 79189000 72087000 24484000 17704000 25546000 11759000 3112500 9946800 198 120 205 2444;2445;2446;2447;2448;2449;2450;2451;2452;2453;2454;2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465 1232;1233;1234;1235;1236;1237 1236 4 6955400 11786000 17256000 10957000 7079600 4878800 5789400 15887000 16553000 12427000 5970900 4218800 4311300 2939600 4270600 GVVTEIIHDPGRGAPLAR KFRSLDFGERNGYLKGVVTEIIHDPGRGAP TEIIHDPGRGAPLARVTFRHPFRFKKQKEL K G V A R V 2 2 0 1 0 0 1 3 1 2 1 0 0 0 2 0 1 0 0 2 0 0 18 1 1857.0221 P46286;Q42064 P46286 43 60 RPL8A;RPL8C 60S ribosomal protein L8-1;60S ribosomal protein L8-3 no no 3;4 2.9942E-29 72.898 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 1 1 1 155990000 3735800 5434100 10500000 2345700 0 0 40870000 28242000 55217000 3373400 0 0 0 3491700 2784400 199 104;147 206 2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479 1238;1239;1240;1241;1242;1243;1244 1242 7 3735800 5131100 6776600 1146300 0 0 6628700 5665900 12679000 1712100 0 0 0 3297700 1195500 HAVSEGTKAVTKFTSS IQTAVRLVLPGELAKHAVSEGTKAVTKFTS AVSEGTKAVTKFTSS_______________ K H A S S - 2 0 0 0 0 0 1 1 1 0 0 2 0 1 0 3 3 0 0 2 0 0 16 2 1648.842 Q9LZT0;P40283;O23629;Q9FFC0;Q9LQQ4;Q9SI96;Q9SF55;Q9LZ45;Q9LFF6 Q9LZT0 130 145 H2B Histone H2B.7;Histone H2B.11;Histone H2B.6;Histone H2B.10;Histone H2B.1;Histone H2B.3;Histone H2B.5;Histone H2B.9;Histone H2B.8 yes no 2;3 0 237.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 2 2 2 2 3 3 3 3 2 3 4137100000 206950000 209660000 408330000 160230000 166640000 60807000 903600000 689140000 663450000 42176000 94952000 361280000 64121000 0 105740000 200 70 207 2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514 1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265 1249 21 206950000 197970000 263540000 78304000 102780000 59744000 146560000 138250000 152350000 21406000 32023000 59662000 23508000 0 45399000 HIEEELHHTK PTEISAISWEAIIQKHIEEELHHTKTEGTE AIIQKHIEEELHHTKTEGTELGLEHFLHRG K H I T K T 0 0 0 0 0 0 3 0 3 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1271.6258 A0A1P8B3P8;F4JW21;A0A1P8B3N6;F4JW20 A0A1P8B3P8 878 887 At4g39420 yes no 2 0.003062 55.717 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 148800000 5988200 9456500 6604300 12157000 10066000 4233500 61749000 0 0 9519000 7793000 16530000 0 4699600 0 201 14 208 2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525 1266;1267;1268;1269;1270;1271;1272 1272 4 5988200 8929200 4262500 5941000 6208700 4159600 10015000 0 0 4831200 2628300 2729800 0 4438500 0 IAAISVAQR GHGGYCNIICTQPRRIAAISVAQRVADERC CTQPRRIAAISVAQRVADERCESSPGLDDS R I A Q R V 3 1 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 9 0 927.55016 F4I9Q5 F4I9Q5 674 682 At1g58060 yes yes 2 0.00042295 64.776 By MS/MS By MS/MS By MS/MS 1 1 1 240630000 0 0 0 0 0 0 94576000 80338000 65715000 0 0 0 0 0 0 202 41 209 2526;2527;2528 1273;1274 1274 2 0 0 0 0 0 0 15339000 16117000 15090000 0 0 0 0 0 0 IAIQAGAAGIIVSNHGAR LPILVKGVLTGEDARIAIQAGAAGIIVSNH QAGAAGIIVSNHGARQLDYVPATISALEEV R I A A R Q 5 1 1 0 0 1 0 3 1 4 0 0 0 0 0 1 0 0 0 1 0 0 18 0 1717.9588 A8MS37;B3H4B8;Q9LRR9;F4JFV6;Q9LRS0 A8MS37 233 250 At3g14420;GLO1;At3g14415;GLO2 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1;Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 yes no 3 0.0065497 28.549 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 54588000 0 2562800 0 3990600 0 1849000 11064000 5883200 0 0 5422400 15418000 4154700 0 4243200 203 27 210 2529;2530;2531;2532;2533;2534;2535;2536;2537 1275 1275 1 0 2419900 0 1950100 0 1816700 1794400 1180300 0 0 1828800 2546200 1523200 0 1821800 IDISGVNTEK LRRVNQAYVIGTSTKIDISGVNTEKFDDKY GTSTKIDISGVNTEKFDDKYFGKVAEKKKK K I D E K F 0 0 1 1 0 0 1 1 0 2 0 1 0 0 0 1 1 0 0 1 0 0 10 0 1074.5557 Q9FZ76 Q9FZ76 146 155 RPL6A 60S ribosomal protein L6-1 yes yes 2 0.0044027 63.565 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 76648000 0 0 0 0 0 3471200 0 0 0 10180000 9872600 16309000 18316000 4952900 13547000 204 186 211 2538;2539;2540;2541;2542;2543;2544 1276;1277 1277 1 0 0 0 0 0 3410500 0 0 0 5166500 3329600 2693300 6714900 4677800 5816400 IDMTTTVLGFK GSCDFRPRILIDVSKIDMTTTVLGFKISMP DVSKIDMTTTVLGFKISMPIMVAPTAMQKM K I D F K I 0 0 0 1 0 0 0 1 0 1 1 1 1 1 0 0 3 0 0 1 0 0 11 0 1224.6424 A8MS37;B3H4B8;Q9LRR9;Q2V3V9 A8MS37 51 61 At3g14420;GLO1 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 yes no 2 2.035E-08 67.981 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 205 27 212 2545 1278 1278 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 IFPDKPVTVRPAETR AMTRNVRRGGKIWVRIFPDKPVTVRPAETR IFPDKPVTVRPAETRMGSGKGSPEYWVAVV R I F T R M 1 2 0 1 0 0 1 0 0 1 0 1 0 1 3 0 2 0 0 2 0 0 15 2 1724.9574 P56793 P56793 68 82 rpl16 50S ribosomal protein L16, chloroplastic yes yes 3;4 5.5237E-15 70.412 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 1 2 2 1 1 2 1 2 1 417270000 10578000 14762000 13558000 16492000 17723000 4404700 66262000 84367000 74758000 9897400 14047000 52120000 14828000 7014400 16456000 206 124 213 2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568 1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294 1283 11 10578000 13939000 8750400 8059100 10932000 4327700 10747000 16926000 17167000 5023300 4737500 8607200 5436400 6624800 7065400 IFPRPTSGPLRPVVHGQTLK RKTRRRIARQKKAVKIFPRPTSGPLRPVVH TSGPLRPVVHGQTLKYNMKVRTGKGFTLEE K I F L K Y 0 2 0 0 0 1 0 2 1 1 2 1 0 1 4 1 2 0 0 2 0 0 20 2 2199.264 P41127;A8MQA1;F4IWP7;Q9FF90 P41127 44 63 RPL13B;BBC1;RPL13D 60S ribosomal protein L13-1;60S ribosomal protein L13;60S ribosomal protein L13-3 no no 5 0.0040703 31.514 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 65595000 0 2460300 575720 0 0 0 20709000 21948000 14714000 0 0 0 0 0 5188200 207 21;179 214 2569;2570;2571;2572;2573;2574 1295 1295 1 0 2323200 371580 0 0 0 3358900 4403200 3378700 0 0 0 0 0 2227500 IGATSDLQSVK TDPNQNTGIVIQKCRIGATSDLQSVKGSFP QKCRIGATSDLQSVKGSFPTYLGRPWKEYS R I G V K G 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 2 1 0 0 1 0 0 11 0 1117.5979 O49006 O49006 479 489 PME3 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3 yes yes 2 0.012445 70.919 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 189630000 5531700 4577500 4234800 14655000 9556800 0 7547900 10456000 5704000 13791000 24171000 68867000 9507000 1849800 9182400 208 71 215 2575;2576;2577;2578;2579;2580;2581;2582;2583;2584;2585;2586;2587;2588 1296 1296 1 5531700 4322300 2733200 7161700 5894700 0 1224200 2097600 1309800 6999500 8152000 11373000 3485500 1747000 3942400 IGEITSGGFSPNLK PARSHSEVHDESGNKIGEITSGGFSPNLKK KIGEITSGGFSPNLKKNIAMGYVKSGQHKT K I G L K K 0 0 1 0 0 0 1 3 0 2 1 1 0 1 1 2 1 0 0 0 0 0 14 0 1418.7405 A0A2H1ZEA9;O65396 A0A2H1ZEA9 364 377 GDCST Aminomethyltransferase, mitochondrial yes no 2 0.029134 35.944 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 209 19 216 2589 1297 1297 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 IGEITSGGFSPNLKK PARSHSEVHDESGNKIGEITSGGFSPNLKK IGEITSGGFSPNLKKNIAMGYVKSGQHKTG K I G K K N 0 0 1 0 0 0 1 3 0 2 1 2 0 1 1 2 1 0 0 0 0 0 15 1 1546.8355 A0A2H1ZEA9;O65396 A0A2H1ZEA9 364 378 GDCST Aminomethyltransferase, mitochondrial yes no 3 2.026E-08 49.929 By MS/MS By MS/MS By MS/MS 1 1 1 39148000 0 0 0 0 8776800 6095200 0 0 0 0 0 24276000 0 0 0 210 19 217 2590;2591;2592 1298;1299 1298 2 0 0 0 0 5413700 5988700 0 0 0 0 0 4009000 0 0 0 IGEITSGGFSPNLKKNIAMGYVK PARSHSEVHDESGNKIGEITSGGFSPNLKK FSPNLKKNIAMGYVKSGQHKTGTKVKILVR K I G V K S 1 0 2 0 0 0 1 4 0 3 1 3 1 1 1 2 1 0 1 1 0 0 23 2 2423.2883 A0A2H1ZEA9;O65396 A0A2H1ZEA9 364 386 GDCST Aminomethyltransferase, mitochondrial yes no 4 0.0081115 31.753 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 15754000 2417000 0 0 0 0 0 5715800 5254900 2366100 0 0 0 0 0 0 211 19 218 2593;2594;2595;2596 1300 1300 1 2417000 0 0 0 0 0 927050 1054200 543320 0 0 0 0 0 0 IGEVTKIFTHNSTIVIK FGDTVKVISGRDKGKIGEVTKIFTHNSTIV EVTKIFTHNSTIVIKDVNLKTKHMKSREEG K I G I K D 0 0 1 0 0 0 1 1 1 4 0 2 0 1 0 1 3 0 0 2 0 0 17 1 1899.0829 P92959 P92959 90 106 RPL24 50S ribosomal protein L24, chloroplastic yes yes 3;4 2.352E-11 71.344 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 623120000 15097000 19715000 15321000 28741000 14822000 5052100 164460000 94442000 85019000 25628000 28833000 45445000 32083000 16849000 31612000 212 136 219 2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626 1301;1302;1303;1304;1305;1306 1306 5 15097000 18616000 9888100 14045000 9142200 4963900 26674000 18947000 19523000 13007000 9724100 7504900 11762000 15913000 13572000 IGGIGTVPVGR PSDKPLRLPLQDVYKIGGIGTVPVGRVIIM DVYKIGGIGTVPVGRVIIMNHPGQIGNGYA K I G G R V 0 1 0 0 0 0 0 4 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1024.6029 F4HUA0;Q8W4H7;Q8GTY0;Q0WL56;P0DH99 F4HUA0 244 254 At1g07930;A2;A4;A3;A1 Elongation factor 1-alpha 2;Elongation factor 1-alpha 4;Elongation factor 1-alpha 3;Elongation factor 1-alpha 1 yes no 2 1.1238E-06 67.032 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 113030000 1755800 3890500 4119200 18739000 6228500 3670900 0 0 0 7681600 10841000 42260000 6840600 2122800 4878200 213 36 220 2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638 1307;1308;1309;1310 1308 1 1755800 3673600 2658600 9157500 3841800 3606800 0 0 0 3898700 3656400 6978900 2507900 2004900 2094400 IGINGFGR ______________________________ MADKKIRIGINGFGRIGRLVARVVLQRDDV R I G G R I 0 1 1 0 0 0 0 3 0 2 0 0 0 1 0 0 0 0 0 0 0 0 8 0 832.45554 F4HQT1;Q9FX54;P25858 F4HQT1 8 15 GAPC2;GAPC1 Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic;Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic yes no 2 1.8624E-05 93.595 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 316050000 18432000 21370000 31588000 24985000 4881600 0 85138000 31623000 0 0 18502000 27726000 19538000 7090100 25179000 214 34 221 2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649;2650 1311;1312;1313;1314;1315 1314 5 18432000 20179000 20387000 12210000 3011000 0 13809000 6344200 0 0 6240000 4578700 7163000 6696300 10810000 IGINGFGRIGR ______________________________ KKIRIGINGFGRIGRLVARVVLQRDDVELV R I G G R L 0 2 1 0 0 0 0 4 0 3 0 0 0 1 0 0 0 0 0 0 0 0 11 1 1158.6622 F4HQT1;Q9FX54;P25858 F4HQT1 8 18 GAPC2;GAPC1 Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic;Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic yes no 3 0.028299 27.329 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 34681000 0 0 0 0 0 1218300 4450500 7262600 5748000 3078300 4510300 0 6478000 1934500 0 215 34 222 2651;2652;2653;2654;2655;2656;2657;2658 1316 1316 1 0 0 0 0 0 1197000 721830 1457000 1319900 1562300 1521200 0 2375000 1827100 0 IGLFGGAGVGK IKVVDLLAPYRRGGKIGLFGGAGVGKTVLI RGGKIGLFGGAGVGKTVLIMELINNIAKAH K I G G K T 1 0 0 0 0 0 0 5 0 1 1 1 0 1 0 0 0 0 0 1 0 0 11 0 974.55492 P19366;P83484;P83483;Q9C5A9 P19366 168 178 atpB ATP synthase subunit beta, chloroplastic;ATP synthase subunit beta-2, mitochondrial;ATP synthase subunit beta-1, mitochondrial;ATP synthase subunit beta-3, mitochondrial yes no 2 2.1383E-23 100.82 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 148390000 2708600 2562700 2324700 7106600 5854500 6597900 14051000 14030000 13592000 7017500 9655800 25328000 15478000 7052300 15033000 216 86 223 2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673 1317;1318;1319;1320;1321;1322;1323;1324 1319 7 2708600 2419800 1500400 3472900 3611100 6482600 2278900 2814700 3121000 3561600 3256500 4182800 5674500 6660500 6454400 IGQMVQIER ARIRDLMNRMTLQEKIGQMVQIERSVATPE MTLQEKIGQMVQIERSVATPEVMKKYFIGS K I G E R S 0 1 0 0 0 2 1 1 0 2 0 0 1 0 0 0 0 0 0 1 0 0 9 0 1072.5699 Q8W112;A0A1P8BG25 Q8W112 50 58 At5g20950 yes no 2 4.5288E-07 74.415 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 3 2 3 2 2 3 428870000 3324400 0 4188000 23444000 14397000 11672000 37881000 32857000 25044000 10737000 35220000 167650000 27427000 6777400 28250000 217 18 224;225 2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701;2702;2703;2704;2705 1325;1326;1327;1328;1329;1330;1331;1332;1333 1327 1 7 3324400 0 2703000 11457000 8880400 11468000 6144000 6591800 5750800 5449400 11878000 27686000 10056000 6400900 12129000 IGRIEDVTPIPTDSTR GAQSALRALARSGMKIGRIEDVTPIPTDST GRIEDVTPIPTDSTRRKGGRRGRRL_____ K I G T R R 0 2 0 2 0 0 1 1 0 3 0 0 0 0 2 1 3 0 0 1 0 0 16 1 1768.9319 P42036;Q9CAX6;Q9SIH0 Q9CAX6 125 140 RPS14C;RPS14B;RPS14A 40S ribosomal protein S14-3;40S ribosomal protein S14-2;40S ribosomal protein S14-1 no no 3 1.0171E-17 67.964 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 52397000 2317600 3217500 0 4784100 3710000 3907300 8642100 11400000 7476600 0 0 6941600 0 0 0 218 98;176;213 226 2706;2707;2708;2709;2710;2711;2712;2713;2714 1334;1335;1336;1337;1338;1339;1340 1335 7 2317600 3038100 0 2337900 2288400 3839000 1401700 2287100 1716800 0 0 1146400 0 0 0 IGRIEDVTPIPTDSTRR GAQSALRALARSGMKIGRIEDVTPIPTDST RIEDVTPIPTDSTRRKGGRRGRRL______ K I G R R K 0 3 0 2 0 0 1 1 0 3 0 0 0 0 2 1 3 0 0 1 0 0 17 2 1925.033 P42036;Q9CAX6;Q9SIH0 Q9CAX6 125 141 RPS14C;RPS14B;RPS14A 40S ribosomal protein S14-3;40S ribosomal protein S14-2;40S ribosomal protein S14-1 no no 4 0.0085086 31.319 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 28555000 0 0 1998000 2986200 2206400 0 6932000 8223700 6208200 0 0 0 0 0 0 219 98;176;213 227 2715;2716;2717;2718;2719;2720 1341;1342 1342 2 0 0 1289600 1459300 1360900 0 1124300 1649800 1425600 0 0 0 0 0 0 IIGTWLGLCIQDK LKDKKMHGALQRGQKIIGTWLGLCIQDKHS QKIIGTWLGLCIQDKHSLFQVIVSRSYPIT K I I D K H 0 0 0 1 1 1 0 2 0 3 2 1 0 0 0 0 1 1 0 0 0 0 13 0 1458.7905 Q0WPH4 Q0WPH4 510 522 At2g21840 yes yes 2 0.01389 49.813 By MS/MS 1 1095400 0 0 0 0 0 0 0 0 1095400 0 0 0 0 0 0 220 138 228 2721 1343 1343 0 0 0 0 0 0 0 0 0 251540 0 0 0 0 0 0 IINSDEIQSVVNPIKK YVLPRAKMVNADLARIINSDEIQSVVNPIK INSDEIQSVVNPIKKDAKRAVLKKNPLKNL R I I K K D 0 0 2 1 0 1 1 0 0 4 0 2 0 0 1 2 0 0 0 2 0 0 16 1 1796.0044 Q2V3X4;Q9SF40 Q2V3X4 298 313 At3g09630;RPL4A 60S ribosomal protein L4-1 yes no 3 0.0093445 53.754 By MS/MS By MS/MS By matching 1 1 1 11521000 0 0 0 1855600 0 0 5612800 4052300 0 0 0 0 0 0 0 221 141 229 2722;2723;2724 1344 1344 1 0 0 0 906820 0 0 910350 812970 0 0 0 0 0 0 0 IINSDEIQSVVNPIKKDAK YVLPRAKMVNADLARIINSDEIQSVVNPIK DEIQSVVNPIKKDAKRAVLKKNPLKNLNVM R I I A K R 1 0 2 2 0 1 1 0 0 4 0 3 0 0 1 2 0 0 0 2 0 0 19 2 2110.1634 Q2V3X4;Q9SF40 Q2V3X4 298 316 At3g09630;RPL4A 60S ribosomal protein L4-1 yes no 4 0.00082802 33.872 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 41879000 0 0 0 2052200 0 0 21121000 6248000 5730700 0 0 4520100 0 0 2207100 222 141 230 2725;2726;2727;2728;2729;2730 1345;1346 1345 2 0 0 0 1002900 0 0 3425700 1253500 1315900 0 0 746450 0 0 947600 IINSDEVQSVVNPIKDGSK YVLPRAKMVNADLARIINSDEVQSVVNPIK DEVQSVVNPIKDGSKRAVLKKNPLKNLNVM R I I S K R 0 0 2 2 0 1 1 1 0 3 0 2 0 0 1 3 0 0 0 3 0 0 19 1 2041.0691 F4KDU5;P49691 F4KDU5 299 317 At5g02870;RPL4D 60S ribosomal protein L4-2 yes no 3 0.0028453 35.64 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 25575000 0 0 0 3042300 0 0 9520600 5568200 4222100 0 0 0 0 0 3222300 223 63 231 2731;2732;2733;2734;2735 1347;1348 1347 2 0 0 0 1486700 0 0 1544200 1117100 969510 0 0 0 0 0 1383500 IIRSPEPEVK ______________________________ ______________________________ M I I V K I 0 1 0 0 0 0 2 0 0 2 0 1 0 0 2 1 0 0 0 1 0 0 10 1 1166.6659 P56766 P56766 2 11 psaA Photosystem I P700 chlorophyll a apoprotein A1 yes yes 2 2.8716E-119 124.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 2 2 1 1 1 1 2 2 3 2 2 7214300000 116440000 173620000 117770000 430280000 332130000 246630000 308060000 388990000 361200000 639730000 863380000 1694400000 769860000 303750000 468080000 224 118 232 2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760 1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359;1360;1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396 1362 48 116440000 163940000 76009000 210270000 204860000 242320000 49964000 78038000 82941000 324680000 291180000 279810000 282250000 286870000 200970000 ILSLLPFLNNQK LKQQRLITIAIKQARILSLLPFLNNQKQFE QARILSLLPFLNNQKQFERSESTPRTTSLR R I L Q K Q 0 0 2 0 0 1 0 0 0 1 4 1 0 1 1 1 0 0 0 0 0 0 12 0 1398.8235 P56807 P56807 71 82 rps18 30S ribosomal protein S18, chloroplastic yes yes 2 0.0093235 54.549 By MS/MS By MS/MS By matching 1 1 1 6935700 0 0 0 0 0 0 3917200 1557800 1460700 0 0 0 0 0 0 225 126 233 2761;2762;2763 1397 1397 1 0 0 0 0 0 0 635340 312530 335410 0 0 0 0 0 0 ILSLLPFLNNQKQFER LKQQRLITIAIKQARILSLLPFLNNQKQFE LSLLPFLNNQKQFERSESTPRTTSLRTRKK R I L E R S 0 1 2 0 0 2 1 0 0 1 4 1 0 2 1 1 0 0 0 0 0 0 16 1 1959.0942 P56807 P56807 71 86 rps18 30S ribosomal protein S18, chloroplastic yes yes 3 2.8678E-60 125.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 193240000 8954000 10051000 21527000 4161700 1749200 0 72223000 34696000 36794000 0 0 0 0 0 3080400 226 126 234 2764;2765;2766;2767;2768;2769;2770;2771;2772 1398;1399;1400;1401;1402 1401 5 8954000 9490500 13894000 2033700 1078900 0 11714000 6960600 8448900 0 0 0 0 0 1322500 ILSLLPFLNNQKQFERSESTPR LKQQRLITIAIKQARILSLLPFLNNQKQFE LNNQKQFERSESTPRTTSLRTRKK______ R I L P R T 0 2 2 0 0 2 2 0 0 1 4 1 0 2 2 3 1 0 0 0 0 0 22 2 2616.4024 P56807 P56807 71 92 rps18 30S ribosomal protein S18, chloroplastic yes yes 4 0.0045194 39.385 By MS/MS By MS/MS By MS/MS 1 1 1 13270000 0 3246800 6308000 0 0 0 3715500 0 0 0 0 0 0 0 0 227 126 235 2773;2774;2775 1403 1403 1 0 3065800 4071300 0 0 0 602610 0 0 0 0 0 0 0 0 ILVDRDPIK ______________________________ PEPEVKILVDRDPIKTSFEEWAKPGHFSRT K I L I K T 0 1 0 2 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 9 1 1067.6339 P56766 P56766 12 20 psaA Photosystem I P700 chlorophyll a apoprotein A1 yes yes 2 1.6522E-15 110.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 103470000 0 0 0 4605300 2229000 1413300 8013100 11946000 6972300 8145900 10840000 22057000 10442000 6622000 10181000 228 118 236 2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786;2787 1404;1405;1406;1407 1407 2 0 0 0 2250500 1374900 1388600 1299700 2396500 1601000 4134300 3655900 3642500 3828300 6254100 4371400 IPPAYTKTFQGPPHGIQVER FGFKALAALRLEDLRIPPAYTKTFQGPPHG TKTFQGPPHGIQVERDKLNKYGRPLLGCTI R I P E R D 1 1 0 0 0 2 1 2 1 2 0 1 0 1 4 0 2 0 1 1 0 0 20 1 2235.18 O03042 O03042 140 159 rbcL Ribulose bisphosphate carboxylase large chain yes yes 4 1.0789E-50 85.563 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 116560000 0 0 1382000 4249100 3047000 0 24763000 23987000 18202000 0 8775700 12776000 6449500 4321300 8605500 229 64 237 2788;2789;2790;2791;2792;2793;2794;2795;2796;2797;2798 1408;1409;1410 1408 3 0 0 891950 2076400 1879400 0 4016300 4812200 4179800 0 2959700 2109900 2364500 4081200 3694700 IQGIPHLRPTEYKR KKRASGPKCPVTGKRIQGIPHLRPTEYKRS RIQGIPHLRPTEYKRSRLSRNRRTVNRAYG R I Q K R S 0 2 0 0 0 1 1 1 1 2 1 1 0 0 2 0 1 0 1 0 0 0 14 2 1706.958 Q9FE65 Q9FE65 51 64 RPL34B 60S ribosomal protein L34-2 yes yes 4 0.00017149 47.712 By MS/MS By MS/MS By MS/MS 1 2 1 35951000 0 0 0 0 0 0 11727000 15100000 9123900 0 0 0 0 0 0 230 178 238 2799;2800;2801;2802 1411;1412 1411 2 0 0 0 0 0 0 1902100 3029300 2095100 0 0 0 0 0 0 IQKGPVRGISLK LRNKIAGFSTHLMKRIQKGPVRGISLKLQE MKRIQKGPVRGISLKLQEEERERRMDFVPD R I Q L K L 0 1 0 0 0 1 0 2 0 2 1 2 0 0 1 1 0 0 0 1 0 0 12 2 1294.8085 Q9SQZ1;Q9SJ36;Q9LZ17;P49205 Q9SQZ1 61 72 RPS17C;RPS17B;RPS17D;RPS17A 40S ribosomal protein S17-3;40S ribosomal protein S17-2;40S ribosomal protein S17-4;40S ribosomal protein S17-1 yes no 2;3 0.0082055 39.625 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 96882000 3682700 4063800 4782700 4479500 4596900 0 26723000 23324000 25230000 0 0 0 0 0 0 231 106 239 2803;2804;2805;2806;2807;2808;2809;2810;2811 1413;1414 1414 2 3682700 3837200 3086800 2189000 2835400 0 4334200 4679200 5793400 0 0 0 0 0 0 IRIGINGFGR ______________________________ MADKKIRIGINGFGRIGRLVARVVLQRDDV K I R G R I 0 2 1 0 0 0 0 3 0 3 0 0 0 1 0 0 0 0 0 0 0 0 10 1 1101.6407 F4HQT1;Q9FX54;P25858 F4HQT1 6 15 GAPC2;GAPC1 Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic;Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic yes no 3 0.0012748 45.68 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 21218000 983780 1751500 973360 0 0 0 5456300 4851400 7201600 0 0 0 0 0 0 232 34 240 2812;2813;2814;2815;2816;2817 1415;1416 1415 2 983780 1653900 628220 0 0 0 884960 973280 1653700 0 0 0 0 0 0 ISDFLSPK ESPENKIQPDFYTSKISDFLSPKAATV___ PDFYTSKISDFLSPKAATV___________ K I S P K A 0 0 0 1 0 0 0 0 0 1 1 1 0 1 1 2 0 0 0 0 0 0 8 0 905.48583 P0DKC4;P0DKC3 P0DKC4 351 358 PGLP1B;PGLP1A Phosphoglycolate phosphatase 1B, chloroplastic;Phosphoglycolate phosphatase 1A, chloroplastic yes no 2 3.1575E-08 114.54 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 21398000 4303300 4830000 6823900 1685200 0 0 0 0 2663800 0 0 0 0 1092200 0 233 81 241 2818;2819;2820;2821;2822;2823 1417 1417 0 4303300 4560700 4404200 823510 0 0 0 0 611680 0 0 0 0 1031600 0 ISLIQSAPQTNK TKALVDFNEKWQQNKISLIQSAPQTNKLDQ QNKISLIQSAPQTNKLDQDRSLSLKEAINA K I S N K L 1 0 1 0 0 2 0 0 0 2 1 1 0 0 1 2 1 0 0 0 0 0 12 0 1298.7194 Q9M3D6 Q9M3D6 362 373 ABCG19 ABC transporter G family member 19 yes yes 2 0.00038452 71.379 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 2 2 2 2 3 1081900000 6871600 6128500 6669200 36602000 23152000 13061000 106970000 143320000 122040000 61957000 106580000 156270000 127120000 46201000 118970000 234 199 242 2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843;2844;2845;2846;2847;2848;2849;2850 1418;1419 1418 2 6871600 5786800 4304400 17887000 14281000 12832000 17350000 28752000 28023000 31445000 35945000 25806000 46606000 43635000 51081000 ISQLVNTAPGIPR KRARDLVSRLTIDEKISQLVNTAPGIPRLG EKISQLVNTAPGIPRLGVPAYEWWSEALHG K I S P R L 1 1 1 0 0 1 0 1 0 2 1 0 0 0 2 1 1 0 0 1 0 0 13 0 1364.7776 Q9SGZ5 Q9SGZ5 62 74 BXL7 Probable beta-D-xylosidase 7 yes yes 2 0.0024066 65.224 By MS/MS By MS/MS 1 1 9187500 0 0 0 0 0 2145500 0 0 0 0 0 7042000 0 0 0 235 211 243 2851;2852 1420 1420 0 0 0 0 0 0 2108000 0 0 0 0 0 1162900 0 0 0 ISVYPREIVPENPNSYRAR DGLVKFEKFGPDRKKISVYPREIVPENPNS PREIVPENPNSYRARKRENFRLQREKKKAR K I S A R K 1 3 2 0 0 0 2 0 0 2 0 0 0 0 3 2 0 0 2 2 0 0 19 2 2259.176 Q9FLN4 Q9FLN4 136 154 RPL27 50S ribosomal protein L27, chloroplastic yes yes 4 0.0028081 33.697 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 10008000 2484800 2359700 3289500 0 1873800 0 0 0 0 0 0 0 0 0 0 236 183 244 2853;2854;2855;2856 1421 1421 1 2484800 2228200 2123100 0 1155800 0 0 0 0 0 0 0 0 0 0 ITLDPEDPAAVK KNKFQAAVDILRKEKITLDPEDPAAVKQYA KEKITLDPEDPAAVKQYANVMKTIRQKADM K I T V K Q 2 0 0 2 0 0 1 0 0 1 1 1 0 0 2 0 1 0 0 1 0 0 12 0 1267.666 F4III4;Q9SJ12 F4III4 70 81 MGP1 Probable ATP synthase 24 kDa subunit, mitochondrial yes no 2 8.8661E-06 60.973 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55298000 0 0 0 3552000 3928200 2734300 7314100 6302400 4896700 2792000 7905500 13363000 0 0 2510300 237 44 245 2857;2858;2859;2860;2861;2862;2863;2864;2865;2866 1422;1423;1424 1422 1 0 0 0 1735800 2423000 2686500 1186300 1264400 1124400 1417000 2666200 2206800 0 0 1077800 ITLDPEDPAAVKQYANVMK KNKFQAAVDILRKEKITLDPEDPAAVKQYA PEDPAAVKQYANVMKTIRQKADMFSESQRI K I T M K T 3 0 1 2 0 1 1 0 0 1 1 2 1 0 2 0 1 0 1 2 0 0 19 1 2102.0718 F4III4;Q9SJ12 F4III4 70 88 MGP1 Probable ATP synthase 24 kDa subunit, mitochondrial yes no 3 1.2071E-29 71.344 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 190100000 2528900 4740600 6890600 6843500 0 0 39719000 34060000 31971000 7391600 12078000 17831000 12178000 6281000 7588700 238 44 246 2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879 1425;1426 1426 6 2 2528900 4476300 4447300 3344300 0 0 6442100 6833100 7341400 3751500 4073400 2944600 4464600 5932100 3258200 ITPAKIVGVNIPK MIKGALPGKPGNLLRITPAKIVGVNIPKN_ LRITPAKIVGVNIPKN______________ R I T P K N 1 0 1 0 0 0 0 1 0 3 0 2 0 0 2 0 1 0 0 2 0 0 13 1 1348.8442 Q9SKX4 Q9SKX4 258 270 RPL3A 50S ribosomal protein L3-1, chloroplastic yes yes 3 0.014632 57.348 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 56326000 0 0 0 3863400 0 0 17991000 20228000 14243000 0 0 0 0 0 0 239 215 247 2880;2881;2882;2883 1427 1427 1 0 0 0 1888000 0 0 2918000 4058100 3270600 0 0 0 0 0 0 ITPAKIVGVNIPKN MIKGALPGKPGNLLRITPAKIVGVNIPKN_ RITPAKIVGVNIPKN_______________ R I T K N - 1 0 2 0 0 0 0 1 0 3 0 2 0 0 2 0 1 0 0 2 0 0 14 2 1462.8871 Q9SKX4 Q9SKX4 258 271 RPL3A 50S ribosomal protein L3-1, chloroplastic yes yes 2;3 2.3E-16 91.853 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1847300000 25814000 43322000 66222000 48859000 30112000 7432600 425410000 326270000 313280000 77445000 113120000 129220000 95395000 50861000 94482000 240 215 248 2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912 1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444 1442 12 25814000 40907000 42741000 23876000 18573000 7302800 68998000 65457000 71938000 39306000 38152000 21340000 34974000 48036000 40565000 ITREKVNGTTVNVGIQPSK VVQVYRRKWVIHIERITREKVNGTTVNVGI KVNGTTVNVGIQPSKVVITKLRLDKDRKSL R I T S K V 0 1 2 0 0 1 1 2 0 2 0 2 0 0 1 1 3 0 0 3 0 0 19 2 2040.1328 P51414 P51414 84 102 RPL26A 60S ribosomal protein L26-1 yes yes 2;3;4 4.1005E-73 115.8 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 3 3 3 2 3 3 3 3 3 2278000000 15437000 1038100 19775000 41035000 38107000 17843000 460930000 326110000 249000000 120300000 182570000 255180000 231170000 157420000 162110000 241 111 249 2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935;2936;2937;2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948 1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471;1472;1473 1466 25 15437000 980210 12763000 20053000 23505000 17531000 74758000 65423000 57178000 61055000 61574000 42141000 84753000 148670000 69599000 IVGVNIPKN LPGKPGNLLRITPAKIVGVNIPKN______ RITPAKIVGVNIPKN_______________ K I V K N - 0 0 2 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 0 2 0 0 9 1 952.57057 Q9SKX4 Q9SKX4 263 271 RPL3A 50S ribosomal protein L3-1, chloroplastic yes yes 2 0.0013816 72.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 833830000 9275600 13654000 22269000 22473000 20036000 11551000 66280000 57633000 52395000 80591000 95181000 133690000 116740000 53040000 79013000 242 215 250 2949;2950;2951;2952;2953;2954;2955;2956;2957;2958;2959;2960;2961;2962;2963 1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485 1474 9 9275600 12893000 14373000 10982000 12358000 11349000 10750000 11562000 12031000 40903000 32101000 22078000 42801000 50093000 33924000 IWDAKPLVNGREIMQIAELK YLTVEATIHELGLDKIWDAKPLVNGREIMQ PLVNGREIMQIAELKGGSRLIREWKLLTWQ K I W L K G 2 1 1 1 0 1 2 1 0 3 2 2 1 0 1 0 0 1 0 1 0 0 20 2 2323.2722 F4I2Y2;Q94K06;A0A1P8AU61 F4I2Y2 543 562 At1g22660;T22J18.17 yes no 6 0.010707 15.09 By matching By matching By MS/MS By MS/MS 1 1 1 1 14433000 0 0 1269700 0 0 0 6100700 3379400 3682900 0 0 0 0 0 0 243 8 251 2964;2965;2966;2967 1486;1487 1487 2 0 0 819490 0 0 0 989480 677970 845700 0 0 0 0 0 0 KATLVVGNVLPLR AAEGMYTGQFLYCGKKATLVVGNVLPLRSI GKKATLVVGNVLPLRSIPEGAVVCNVEHHV K K A L R S 1 1 1 0 0 0 0 1 0 0 3 1 0 0 1 0 1 0 0 3 0 0 13 1 1378.866 P46286;Q42064 P46286 93 105 RPL8A;RPL8C 60S ribosomal protein L8-1;60S ribosomal protein L8-3 no no 3 4.1204E-13 72.652 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 21727000 909720 1537500 2921000 0 1187100 0 6204300 3926500 5041100 0 0 0 0 0 0 244 104;147 252 2968;2969;2970;2971;2972;2973;2974 1488;1489;1490;1491 1489 4 909720 1451800 1885200 0 732220 0 1006300 787730 1157600 0 0 0 0 0 0 KDAATALFNLSIHQENK GPLVDLLGNGTPRGKKDAATALFNLSIHQE AATALFNLSIHQENKAMIVQSGAVRYLIDL K K D N K A 3 0 2 1 0 1 1 0 1 1 2 2 0 1 0 1 1 0 0 0 0 0 17 1 1898.985 A0A1P8AYN7;F4ILG6;O22193 A0A1P8AYN7 494 510 At2g23140;PUB4 U-box domain-containing protein 4 yes no 3 0.0095985 17.489 By MS/MS By MS/MS By MS/MS 1 1 1 322130000 0 0 0 0 6868800 0 0 160820000 154440000 0 0 0 0 0 0 245 11 253 2975;2976;2977 1492 1492 1 0 0 0 0 4236800 0 0 32264000 35463000 0 0 0 0 0 0 KFVESAATSFSVA CKAQAGDKRWFKGARKFVESAATSFSVA__ ARKFVESAATSFSVA_______________ R K F V A - 3 0 0 0 0 0 1 0 0 0 0 1 0 2 0 3 1 0 0 2 0 0 13 1 1342.6769 Q42029 Q42029 251 263 PSBP1 Oxygen-evolving enhancer protein 2-1, chloroplastic yes yes 2 0.023764 50.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 41188000 5263900 6202500 11317000 0 0 0 8363600 2868400 7173100 0 0 0 0 0 0 246 146 254 2978;2979;2980;2981;2982;2983 1493;1494 1494 2 5263900 5856600 7303900 0 0 0 1356500 575450 1647200 0 0 0 0 0 0 KGLTPSQIGVILR TTSQDVDESICKFAKKGLTPSQIGVILRDS AKKGLTPSQIGVILRDSHGIPQVKSVTGSK K K G L R D 0 1 0 0 0 1 0 2 0 2 2 1 0 0 1 1 1 0 0 1 0 0 13 1 1380.8453 P59224;P59223 P59224 43 55 RPS13B;RPS13A 40S ribosomal protein S13-2;40S ribosomal protein S13-1 yes no 3 0.01459 54.198 By MS/MS By MS/MS By MS/MS 1 1 1 18846000 0 0 5108700 0 0 0 8991000 4746100 0 0 0 0 0 0 0 247 127 255 2984;2985;2986 1495;1496;1497 1497 3 0 0 3297200 0 0 0 1458300 952150 0 0 0 0 0 0 0 KGPLVVFGTEGAK RPGKGKMRNRRYISRKGPLVVFGTEGAKIV SRKGPLVVFGTEGAKIVKAFRNLPGVELCH R K G A K I 1 0 0 0 0 0 1 3 0 0 1 2 0 1 1 0 1 0 0 2 0 0 13 1 1301.7343 F4KDU5;P49691 F4KDU5 211 223 At5g02870;RPL4D 60S ribosomal protein L4-2 yes no 3 4.2657E-06 48.188 By matching By MS/MS By MS/MS 1 1 1 33158000 0 1168600 0 0 0 0 18956000 0 13033000 0 0 0 0 0 0 248 63 256 2987;2988;2989 1498;1499 1498 1 0 1103500 0 0 0 0 3074500 0 2992700 0 0 0 0 0 0 KGPLVVFGTEGAKIVK RPGKGKMRNRRYISRKGPLVVFGTEGAKIV GPLVVFGTEGAKIVKAFRNLPGVELCHVER R K G V K A 1 0 0 0 0 0 1 3 0 1 1 3 0 1 1 0 1 0 0 3 0 0 16 2 1641.9818 F4KDU5;P49691 F4KDU5 211 226 At5g02870;RPL4D 60S ribosomal protein L4-2 yes no 3 0.027805 41.996 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39528000 0 0 2634800 1833700 0 0 16588000 9293400 9178300 0 0 0 0 0 0 249 63 257 2990;2991;2992;2993;2994 1500 1500 1 0 0 1700500 896080 0 0 2690400 1864400 2107600 0 0 0 0 0 0 KGPLVVYGTEGSK RPGKGKMRNRRYISRKGPLVVYGTEGSKIV SRKGPLVVYGTEGSKIVKAFRNLPGVELCH R K G S K I 0 0 0 0 0 0 1 3 0 0 1 2 0 0 1 1 1 0 1 2 0 0 13 1 1333.7242 Q2V3X4;Q9SF40 Q2V3X4 210 222 At3g09630;RPL4A 60S ribosomal protein L4-1 yes no 2;3 1.4032E-05 70.816 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 2 2 1 2 77576000 0 915050 2754900 587900 1011500 0 15638000 26689000 22616000 0 0 0 0 1430100 5933000 250 141 258 2995;2996;2997;2998;2999;3000;3001;3002;3003;3004;3005;3006;3007 1501;1502;1503 1501 1 0 864030 1778000 287300 623890 0 2536300 5354400 5193200 0 0 0 0 1350700 2547300 KGVTTIIGGGDSVAAVEK KGTEAVANKLAELSKKGVTTIIGGGDSVAA TTIIGGGDSVAAVEKVGVAGVMSHISTGGG K K G E K V 2 0 0 1 0 0 1 4 0 2 0 2 0 0 0 1 2 0 0 3 0 0 18 1 1700.9309 F4I3L1;P50318 F4I3L1 348 365 At1g56190 Phosphoglycerate kinase;Phosphoglycerate kinase 2, chloroplastic yes no 3 2.6291E-14 48.216 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 16901000 2784000 3333600 6849800 0 0 0 3933400 0 0 0 0 0 0 0 0 251 37 259 3008;3009;3010;3011 1504;1505;1506 1506 3 2784000 3147700 4420900 0 0 0 637950 0 0 0 0 0 0 0 0 KSEGGFGGLGSLFKK TVRGGKNSAPTPVPKKSEGGFGGLGSLFKK KSEGGFGGLGSLFKK_______________ K K S K K - 0 0 0 0 0 0 1 5 0 0 2 3 0 2 0 2 0 0 0 0 0 0 15 2 1510.8144 Q9SD66 Q9SD66 86 100 F13I12.120 yes yes 3 3.6577E-05 60.157 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 84752000 0 0 0 13700000 4786900 1370700 14516000 0 12263000 0 10454000 20557000 2402200 0 4701000 252 209 260 3012;3013;3014;3015;3016;3017;3018;3019;3020 1507;1508;1509 1509 3 0 0 0 6695100 2952600 1346700 2354400 0 2816000 0 3525800 3394800 880700 0 2018300 LAEDQRNLLQTQAQTKAQNLR YEAIQAHNDIGRQQKLAEDQRNLLQTQAQT NLLQTQAQTKAQNLRYEDELARKRQQTDHE K L A L R Y 3 2 2 1 0 5 1 0 0 0 4 1 0 0 0 0 2 0 0 0 0 0 21 2 2438.299 F4JQE9 F4JQE9 131 151 At4g36580 yes yes 3 0.0086639 30.956 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 177150000 3411700 3171500 9253600 11012000 9105000 0 92113000 0 0 6737000 12774000 29574000 0 0 0 253 57 261 3021;3022;3023;3024;3025;3026;3027;3028;3029 1510 1510 1 3411700 2994600 5972400 5381300 5616100 0 14940000 0 0 3419300 4308000 4883900 0 0 0 LAFVSSAGAFEK SLITSVNKNDIESSKLAFVSSAGAFEKWTT SSKLAFVSSAGAFEKWTTLTGLLEQLKGL_ K L A E K W 3 0 0 0 0 0 1 1 0 0 1 1 0 2 0 2 0 0 0 1 0 0 12 0 1225.6343 A0A1P8B5H3;O22773 A0A1P8B5H3 241 252 Thylakoid lumenal 16.5 kDa protein, chloroplastic yes no 2 3.9263E-26 89.355 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 57885000 3050400 2245000 0 1405600 0 0 17302000 0 10253000 1816200 0 4665400 15963000 0 1183400 254 15 262 3030;3031;3032;3033;3034;3035;3036;3037;3038;3039;3040 1511;1512;1513;1514;1515;1516 1513 6 3050400 2119900 0 686900 0 0 2806300 0 2354400 921810 0 770450 5852500 0 508080 LAKGPGGDVAPVAAPAPAATPAPTAAVPK NKASRERKHARREERLAKGPGGDVAPVAAP PAPAATPAPTAAVPKKKSKK__________ R L A P K K 10 0 0 1 0 0 0 3 0 0 1 2 0 0 7 0 2 0 0 3 0 0 29 1 2562.417 Q9SRX2 Q9SRX2 181 209 RPL19A 60S ribosomal protein L19-1 yes yes 3 3.2869E-18 43.895 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 70693000 0 0 0 4832700 5204700 0 26268000 14853000 15010000 4524600 0 0 0 0 0 255 221 263 3041;3042;3043;3044;3045;3046 1517;1518;1519;1520 1520 4 0 0 0 2361600 3210300 0 4260400 2979700 3446800 2296400 0 0 0 0 0 LAPNLYPKFRP SLLMAKPLHLSVEPRLAPNLYPKFRP____ VEPRLAPNLYPKFRP_______________ R L A R P - 1 1 1 0 0 0 0 0 0 0 2 1 0 1 3 0 0 0 1 0 0 0 11 2 1314.7448 Q949U1 Q949U1 528 538 CYP79F1 Dihomomethionine N-hydroxylase yes yes 3 5.7966E-07 57.598 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36022000 832900 990320 1101900 470550 1839300 0 4471900 3018500 4839200 1472200 0 7616500 4415700 1895900 3056900 256 170 264 3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060 1521;1522;1523;1524 1523 4 832900 935110 711170 229950 1134500 0 725310 605570 1111200 747180 0 1257800 1618900 1790500 1312500 LASRLNVRPSI THEIRGIWISYWSQKLASRLNVRPSI____ WSQKLASRLNVRPSI_______________ K L A S I - 1 2 1 0 0 0 0 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 11 2 1224.7303 B9DG18;A0A1P8B564;A0A1P8AWT7;Q42547;P25819;Q2V4M4 B9DG18 475 485 CAT3;CAT2 Catalase-3;Catalase-2 yes no 3 0.029262 42.802 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 173960000 2956200 4141000 4443400 7045300 7015000 2758800 11747000 18844000 15256000 9068100 16474000 19450000 28395000 8576400 17793000 257 10 265 3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075 1525 1525 1 2956200 3910100 2867900 3442900 4326900 2710600 1905300 3780500 3503200 4602300 5556200 3212100 10410000 8099900 7639300 LASVPSGGGGGVAVASATSGGGGGGGAPAAESK KGKDLAELIAAGREKLASVPSGGGGGVAVA SGGGGGGGAPAAESKKEEKKEEKEESDDDM K L A S K K 7 0 0 0 0 0 1 12 0 0 1 1 0 0 2 5 1 0 0 3 0 0 33 0 2597.2681 A0A1P8B2C7;F4IGR5;F4IGR4;P51407 A0A1P8B2C7 38 70 At2g27720;RPP2A 60S acidic ribosomal protein P2-1 yes no 3 4.3182E-50 67.911 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 38406000 0 0 1441900 3353200 3810500 0 11213000 8540400 8533300 0 0 0 0 1513900 0 258 13 266 3076;3077;3078;3079;3080;3081;3082 1526;1527;1528 1526 3 0 0 930630 1638600 2350400 0 1818700 1713400 1959500 0 0 0 0 1429800 0 LASVPSGGGGGVAVASATSGGGGGGGAPAAESKK KGKDLAELIAAGREKLASVPSGGGGGVAVA GGGGGGGAPAAESKKEEKKEEKEESDDDMG K L A K K E 7 0 0 0 0 0 1 12 0 0 1 2 0 0 2 5 1 0 0 3 0 0 34 1 2725.3631 A0A1P8B2C7;F4IGR5;F4IGR4;P51407 A0A1P8B2C7 38 71 At2g27720;RPP2A 60S acidic ribosomal protein P2-1 yes no 3 0.0039346 26.995 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 66097000 0 0 0 5296300 5502100 5291800 15761000 12456000 7461400 3229900 0 11099000 0 0 0 259 13 267 3083;3084;3085;3086;3087;3088;3089;3090 1529;1530 1529 2 0 0 0 2588200 3393800 5199300 2556200 2498900 1713400 1639300 0 1833000 0 0 0 LASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEK KGKDLAELIAAGREKLASVPSGGGGGVAVA GGGGAPAAESKKEEKKEEKEESDDDMGFSL K L A E K K 7 0 0 0 0 0 3 12 0 0 1 3 0 0 2 5 1 0 0 3 0 0 37 2 3111.5432 A0A1P8B2C7;F4IGR5;F4IGR4;P51407 A0A1P8B2C7 38 74 At2g27720;RPP2A 60S acidic ribosomal protein P2-1 yes no 3;4 0 163.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 504470000 6168400 4908600 7371300 33332000 36095000 23820000 102510000 98733000 53395000 18206000 16734000 64988000 18347000 6563300 13304000 260 13 268 3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107 1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542;1543;1544;1545 1535 15 6168400 4634900 4757500 16289000 22264000 23404000 16626000 19808000 12261000 9240100 5643600 10732000 6726600 6198700 5712000 LASVPSGGGGGVAVASATSGGGGGGGASAAESK KGKDLAELIAAGREKLASVPSGGGGGVAVA SGGGGGGGASAAESKKEEKKEEKEESDDDM K L A S K K 7 0 0 0 0 0 1 12 0 0 1 1 0 0 1 6 1 0 0 3 0 0 33 0 2587.2474 Q9SLF7 Q9SLF7 62 94 RPP2B 60S acidic ribosomal protein P2-2 yes yes 3 2.897E-115 94.275 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 122120000 0 0 0 5784700 5377100 4155500 26772000 24032000 18476000 6640400 0 17906000 5457900 3379100 4135800 261 216 269 3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118 1546;1547;1548;1549;1550;1551;1552 1551 7 0 0 0 2826900 3316600 4082900 4342200 4821200 4242600 3370200 0 2957100 2001000 3191400 1775700 LASVPSGGGGGVAVASATSGGGGGGGASAAESKK KGKDLAELIAAGREKLASVPSGGGGGVAVA GGGGGGGASAAESKKEEKKEEKEESDDDMG K L A K K E 7 0 0 0 0 0 1 12 0 0 1 2 0 0 1 6 1 0 0 3 0 0 34 1 2715.3424 Q9SLF7 Q9SLF7 62 95 RPP2B 60S acidic ribosomal protein P2-2 yes yes 3 1.9653E-113 78.755 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 99969000 0 0 0 8722200 7594800 5802200 27257000 21239000 11719000 3149800 0 14485000 0 0 0 262 216 270 3119;3120;3121;3122;3123;3124;3125;3126 1553;1554;1555;1556;1557;1558 1558 6 0 0 0 4262400 4684500 5700800 4420900 4261000 2691100 1598600 0 2392000 0 0 0 LASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEK KGKDLAELIAAGREKLASVPSGGGGGVAVA GGGGASAAESKKEEKKEEKEESDDDMGFSL K L A E K K 7 0 0 0 0 0 3 12 0 0 1 3 0 0 1 6 1 0 0 3 0 0 37 2 3101.5225 Q9SLF7 Q9SLF7 62 98 RPP2B 60S acidic ribosomal protein P2-2 yes yes 3;4 1.8305E-262 148.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 2 2 2 1 1 2 1 1 1 663790000 8384600 4195200 9257200 41273000 46447000 32630000 135330000 128790000 81062000 17597000 22000000 98776000 14763000 5679600 17610000 263 216 271 3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146 1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571;1572;1573 1571 15 8384600 3961300 5974700 20169000 28649000 32060000 21950000 25837000 18614000 8931200 7419900 16312000 5412300 5364100 7560800 LATSGANFAR LERSKTNKELNDKKRLATSGANFARAFTVQ NDKKRLATSGANFARAFTVQFGSCKFPENF R L A A R A 3 1 1 0 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 10 0 1006.5196 F4KC80;P49107 F4KC80 108 117 PSAN Photosystem I reaction center subunit N, chloroplastic yes no 2 1.3802E-83 142.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1093500000 26478000 41611000 66549000 99009000 59272000 24571000 143360000 102030000 80974000 42039000 72048000 251050000 35953000 0 48587000 264 61 272 3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161 1574;1575;1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593 1574 20 26478000 39291000 42952000 48384000 36560000 24141000 23251000 20470000 18594000 21336000 24299000 41458000 13181000 0 20860000 LDFDWIGKEELEEQSLPISR L D S R 0 1 0 2 0 1 4 1 0 2 3 1 0 1 1 2 0 1 0 0 0 0 20 1 2403.1958 REV__Q8RXD9 yes yes 3 0.0077201 35.64 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1 1 2 3 1 4 1 1 382790000 0 0 0 5233600 4545100 10053000 12423000 18817000 8439100 49812000 84420000 52488000 99463000 18997000 18099000 + 265 238 273 3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181 1594;1595;1596 1594 3 0 0 0 2557600 2803500 9877700 2014900 3775000 1937900 25281000 28472000 8667900 36465000 17941000 7770900 LDTKPVSRPVASEPVDR ISGYACSADIYPEVKLDTKPVSRPVASEPV TKPVSRPVASEPVDREYEEYNSPKTVFREE K L D D R E 1 2 0 2 0 0 1 0 0 0 1 1 0 0 3 2 1 0 0 3 0 0 17 2 1865.0007 Q96500 Q96500 91 107 CCL yes yes 3;4 3.5276E-30 80.706 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 1 2 2 2 2 1 277330000 3002100 2345500 3043400 3345100 17627000 10828000 31401000 31214000 9256400 19550000 27555000 82469000 28127000 0 7564200 266 172 274 3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197;3198;3199;3200;3201;3202;3203 1597;1598;1599;1600;1601;1602;1603;1604;1605;1606 1599 10 3002100 2214700 1964300 1634700 10872000 10639000 5092900 6262100 2125500 9922500 9293200 13619000 10312000 0 3247600 LEDLRIPPAYTKTFQGPPHGIQVER IVGNVFGFKALAALRLEDLRIPPAYTKTFQ TKTFQGPPHGIQVERDKLNKYGRPLLGCTI R L E E R D 1 2 0 1 0 2 2 2 1 2 2 1 0 1 4 0 2 0 1 1 0 0 25 2 2861.5188 O03042 O03042 135 159 rbcL Ribulose bisphosphate carboxylase large chain yes yes 4 0.0070424 32.337 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 19910000 0 0 0 0 0 0 5490400 0 4754500 0 0 0 5379500 4285900 0 267 64 275 3204;3205;3206;3207 1607;1608;1609 1608 3 0 0 0 0 0 0 890500 0 1091800 0 0 0 1972200 4047800 0 LFGGTTPGTITNK AVVAYVCDKVISDDKLFGGTTPGTITNKEW DKLFGGTTPGTITNKEWGAATEERLQAWPR K L F N K E 0 0 1 0 0 0 0 3 0 1 1 1 0 1 1 0 4 0 0 0 0 0 13 0 1305.6929 Q38842 Q38842 30 42 ATOZI1 yes yes 2 0.010015 59.35 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41881000 0 0 0 0 2342800 2805100 0 0 3765700 6451700 7463400 12003000 4460700 0 2589000 268 143 276 3208;3209;3210;3211;3212;3213;3214;3215 1610;1611 1610 2 0 0 0 0 1445100 2756100 0 0 864710 3274500 2517100 1982100 1635400 0 1111600 LGANVGSAQGPTGLGK ASQAQAFTFLVRDQRLGANVGSAQGPTGLG GANVGSAQGPTGLGKYLMRSPTGEVIFGGE R L G G K Y 2 0 1 0 0 1 0 5 0 0 2 1 0 0 1 1 1 0 0 1 0 0 16 0 1425.7576 P56778 P56778 324 339 psbC Photosystem II CP43 reaction center protein yes yes 2 8.462E-21 72.643 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 32681000 0 0 0 2707900 0 0 0 0 0 0 5014200 10251000 6061600 2201800 6445000 269 121 277 3216;3217;3218;3219;3220;3221 1612;1613 1613 2 0 0 0 1323300 0 0 0 0 0 0 1691100 1692800 2222300 2079500 2767100 LGDIMGLLNKK VAAEEAKPPWKTRVKLGDIMGLLNKKAIEV TRVKLGDIMGLLNKKAIEVAETVRPVPGLR K L G K K A 0 0 1 1 0 0 0 2 0 1 3 2 1 0 0 0 0 0 0 0 0 0 11 1 1200.69 Q8RXX5 Q8RXX5 115 125 50S ribosomal protein L19-2, chloroplastic yes yes 3 4.2079E-07 70.256 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 40614000 0 1920300 3030200 2990900 2507400 0 8992600 0 7395800 0 0 0 5664500 2206000 5906500 270 163 278 3222;3223;3224;3225;3226;3227;3228;3229;3230 1614 1614 32 1 0 1813300 1955700 1461600 1546600 0 1458500 0 1698300 0 0 0 2076700 2083400 2535900 LGEHNIDVLEGNEQFINAAK VVSAAHCYKSRIQVRLGEHNIDVLEGNEQF IDVLEGNEQFINAAKIITHPNFNGNTLDND R L G A K I 2 0 3 1 0 1 3 2 1 2 2 1 0 1 0 0 0 0 0 1 0 0 20 0 2210.0968 CON__P00761 CON__P00761 58 77 yes yes 3 2.8638E-05 47.223 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 50980000 5559600 2537000 4337100 3494300 5602900 2364400 6143000 3468300 0 0 0 17473000 0 0 0 + 271 32 279 3231;3232;3233;3234;3235;3236;3237;3238;3239 1615;1616 1616 2 5559600 2395500 2799200 1707600 3455900 2323100 996330 695810 0 0 0 2885500 0 0 0 LGLSAKNYGR NKYGRPLLGCTIKPKLGLSAKNYGRAVYEC TIKPKLGLSAKNYGRAVYECLRGGLDFTKD K L G G R A 1 1 1 0 0 0 0 2 0 0 2 1 0 0 0 1 0 0 1 0 0 0 10 1 1077.5931 O03042 O03042 178 187 rbcL Ribulose bisphosphate carboxylase large chain yes yes 2;3 0.006006 76.847 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 224980000 6502200 11849000 18062000 16274000 12195000 5396800 30045000 24559000 17604000 3344000 0 32067000 28781000 0 18301000 272 64 280 3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264 1617;1618;1619;1620;1621;1622 1620 6 6502200 11188000 11657000 7952900 7521800 5302500 4873100 4927000 4042400 1697200 0 5295600 10552000 0 7857500 LGLVFNPYGGK DGLDFLCKKLMEAGKLGLVFNPYGGKMSEV EAGKLGLVFNPYGGKMSEVATTATPFPHRK K L G G K M 0 0 1 0 0 0 0 3 0 0 2 1 0 1 1 0 0 0 1 1 0 0 11 0 1163.6339 Q9LPC3 Q9LPC3 406 416 F22M8.11 yes yes 2 4.7924E-05 62.714 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 20300000 0 0 0 1208700 0 2234000 0 0 0 2717500 3056100 9749100 0 0 1334700 273 190 281 3265;3266;3267;3268;3269;3270 1623;1624 1624 2 0 0 0 590690 0 2194900 0 0 0 1379200 1030700 1610000 0 0 573030 LGPTSQPQRVKYTQLLR CLPSFRSLTFSGSLRLGPTSQPQRVKYTQL PTSQPQRVKYTQLLRNPRRSSLYYVNLVAI R L G L R N 0 2 0 0 0 3 0 1 0 0 3 1 0 0 2 1 2 0 1 1 0 0 17 2 1984.1218 F4K5B9 F4K5B9 276 292 At5g07030 yes yes 3;4 0.0013617 58.831 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 97944000 4354700 7430900 12010000 4728400 0 0 30797000 22404000 16218000 0 0 0 0 0 0 274 59 282 3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284 1625;1626;1627;1628;1629;1630;1631;1632 1627 8 4354700 7016600 7751600 2310700 0 0 4994900 4494700 3724200 0 0 0 0 0 0 LGSQLDVLAPVK LSKLRAKAEKVAEEKLGSQLDVLAPVKY__ EEKLGSQLDVLAPVKY______________ K L G V K Y 1 0 0 1 0 1 0 1 0 0 3 1 0 0 1 1 0 0 0 2 0 0 12 0 1238.7234 F4JD96;Q9SVR0;Q9SFU1 F4JD96 195 206 At3g07110;RPL13AC;RPL13AA 60S ribosomal protein L13a-3;60S ribosomal protein L13a-1 yes no 2 0.0044896 75.109 By MS/MS By MS/MS 1 1 7441300 0 0 0 0 0 0 4177500 3263800 0 0 0 0 0 0 0 275 55 283 3285;3286 1633;1634 1633 0 0 0 0 0 0 0 677550 654780 0 0 0 0 0 0 0 LGSQLDVLAPVKY LSKLRAKAEKVAEEKLGSQLDVLAPVKY__ EKLGSQLDVLAPVKY_______________ K L G K Y - 1 0 0 1 0 1 0 1 0 0 3 1 0 0 1 1 0 0 1 2 0 0 13 1 1401.7868 F4JD96;Q9SVR0;Q9SFU1 F4JD96 195 207 At3g07110;RPL13AC;RPL13AA 60S ribosomal protein L13a-3;60S ribosomal protein L13a-1 yes no 2 6.7451E-33 139.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 215220000 2399600 4328500 10243000 9960700 3020700 0 86242000 35852000 31954000 4622200 5740000 9618500 4185700 2353600 4698300 276 55 284 3287;3288;3289;3290;3291;3292;3293;3294;3295;3296;3297;3298;3299;3300 1635;1636;1637;1638 1635 2 2399600 4087200 6611100 4867600 1863200 0 13988000 7192600 7337600 2345900 1935900 1588400 1534600 2222800 2017200 LGVKIYGDQVAKPGAIIVR GAGSTKNGRDSPGQRLGVKIYGDQVAKPGA IYGDQVAKPGAIIVRQRGTKFHAGKNVGIG R L G V R Q 2 1 0 1 0 1 0 3 0 3 1 2 0 0 1 0 0 0 1 3 0 0 19 2 1996.1833 Q9FLN4 Q9FLN4 78 96 RPL27 50S ribosomal protein L27, chloroplastic yes yes 3;4 4.5457E-19 62.377 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 334480000 11537000 10316000 19488000 24851000 15469000 7799800 63203000 26994000 18522000 23708000 19990000 50230000 16236000 10132000 16005000 277 183 285 3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311;3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323;3324;3325;3326;3327;3328;3329;3330 1639;1640;1641;1642;1643;1644;1645;1646;1647;1648;1649;1650;1651 1649 12 11537000 9740700 12578000 12144000 9541200 7663500 10251000 5415400 4253100 12033000 6741700 8295000 5952500 9569200 6871900 LIESPAPGIISR NPIDGRGKISASESRLIESPAPGIISRRSV ESRLIESPAPGIISRRSVYEPLQTGLIAID R L I S R R 1 1 0 0 0 0 1 1 0 3 1 0 0 0 2 2 0 0 0 0 0 0 12 0 1251.7187 P56757 P56757 129 140 atpA ATP synthase subunit alpha, chloroplastic yes yes 2 1.7646E-18 98.392 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 350550000 2918800 6232500 5096100 37186000 18939000 12080000 30369000 22021000 20784000 10235000 24216000 119040000 16642000 5496100 19299000 278 115 286 3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347 1652;1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664 1657 12 2918800 5885000 3289100 18172000 11682000 11869000 4925700 4417700 4772700 5194700 8167200 19658000 6101400 5190800 8286000 LIESPAPGIISRR NPIDGRGKISASESRLIESPAPGIISRRSV SRLIESPAPGIISRRSVYEPLQTGLIAIDS R L I R R S 1 2 0 0 0 0 1 1 0 3 1 0 0 0 2 2 0 0 0 0 0 0 13 1 1407.8198 P56757 P56757 129 141 atpA ATP synthase subunit alpha, chloroplastic yes yes 3 1.669E-15 81.865 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 236880000 3501600 6779100 3945700 23446000 12644000 8579900 20730000 12439000 17900000 8571700 15178000 65436000 16877000 6005300 14848000 279 115 287 3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360;3361;3362;3363;3364 1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676 1674 11 3501600 6401200 2546600 11458000 7799000 8430000 3362100 2495600 4110300 4350400 5118900 10806000 6187600 5671700 6374700 LIIQGKNLELSEPIKQHVEEK LAVKMSWDGPLASVKLIIQGKNLELSEPIK NLELSEPIKQHVEEKVGKSVQKHSHLVREV K L I E K V 0 0 1 0 0 2 4 1 1 3 3 3 0 0 1 1 0 0 0 1 0 0 21 2 2444.3639 Q94K97 Q94K97 84 104 At5g24490 yes yes 4 1.0733E-20 63.337 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 56643000 2529600 4301300 9295200 0 0 0 15349000 8317000 8611000 4683000 0 0 0 0 3556700 280 171 288 3365;3366;3367;3368;3369;3370;3371;3372 1677;1678;1679 1678 3 2529600 4061500 5999300 0 0 0 2489500 1668500 1977300 2376800 0 0 0 0 1527100 LIVAGASAYAR DYDQMEKSATLFRPKLIVAGASAYARLYDY FRPKLIVAGASAYARLYDYARIRKVCNKQK K L I A R L 4 1 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 11 0 1090.6135 Q9SZJ5;Q94C74 Q9SZJ5 226 236 SHM1;SHM2 Serine hydroxymethyltransferase 1, mitochondrial;Serine hydroxymethyltransferase 2, mitochondrial yes no 2 4.9338E-07 63.48 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37175000 0 2868500 0 5718200 0 0 11808000 8442800 8337100 0 0 0 0 0 0 281 227 289 3373;3374;3375;3376;3377 1680;1681 1680 2 0 2708600 0 2794400 0 0 1915200 1693800 1914400 0 0 0 0 0 0 LLGEDEPEK HRNYIYGGHVSNYMKLLGEDEPEKLQTHFS VSNYMKLLGEDEPEKLQTHFSAYIKKGVEA K L L E K L 0 0 0 1 0 0 3 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 9 0 1028.5026 F4J912;Q8LBI1;P49227 F4J912 98 106 ATL5;RPL5B 60S ribosomal protein L5-1;60S ribosomal protein L5-2 yes no 2 0.00029028 83.377 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 174170000 0 1494500 2867600 4595100 4792200 2538100 25177000 17631000 16247000 9622000 11080000 23975000 26698000 10679000 16772000 282 53 290 3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391 1682;1683;1684;1685 1685 2 0 1411200 1850800 2245500 2955900 2493700 4083500 3537100 3730800 4883500 3736900 3959300 9788000 10086000 7201100 LLGPGLNK HAFLASESVIKQIPRLLGPGLNKAGKFPTL VIKQIPRLLGPGLNKAGKFPTLVSHQESLE R L L N K A 0 0 1 0 0 0 0 2 0 0 3 1 0 0 1 0 0 0 0 0 0 0 8 0 810.49634 P59230;Q8VZB9;P59231 P59230 122 129 RPL10AB;RPL10AA;RPL10AC 60S ribosomal protein L10a-2;60S ribosomal protein L10a-1;60S ribosomal protein L10a-3 yes no 2 0.022545 70.49 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 93977000 0 1300300 1561800 5312700 3643700 2422300 28146000 21545000 19615000 0 0 0 3996000 0 6433700 283 128 291 3392;3393;3394;3395;3396;3397;3398;3399;3400;3401 1686 1686 1 0 1227800 1008000 2596200 2247500 2379900 4565100 4322300 4504300 0 0 0 1465000 0 2762300 LLGSVTIANGGVLPNIHQTLLPSK RHIQLAVRNDEELSKLLGSVTIANGGVLPN GGVLPNIHQTLLPSKVGKNKGDIGSASQEF K L L S K V 1 0 2 0 0 1 0 3 1 2 5 1 0 0 2 2 2 0 0 2 0 0 24 0 2441.4006 Q9S9K7;O04848 Q9S9K7 104 127 Probable histone H2AXb;Probable histone H2AXa yes no 3 0.01984 20.891 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 42584000 0 0 0 0 0 0 3606100 4339500 2786100 3845500 9512500 7454100 6030200 2236900 2773300 284 66 292 3402;3403;3404;3405;3406;3407;3408;3409;3410 1687 1687 1 0 0 0 0 0 0 584870 870590 639770 1951700 3208200 1231000 2210800 2112600 1190700 LQDSEESIEKPTTE ITFGDTNLAIFRVFKLQDSEESIEKPTTE_ KLQDSEESIEKPTTE_______________ K L Q T E - 0 0 0 1 0 1 4 0 0 1 1 1 0 0 1 2 2 0 0 0 0 0 14 1 1604.7417 Q8GWP4 Q8GWP4 196 209 At2g21530 yes yes 2 1.0049E-21 87.328 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 39559000 1742900 2116700 3921800 0 0 0 10379000 7182300 8457300 0 0 5758700 0 0 0 285 157 293 3411;3412;3413;3414;3415;3416;3417 1688;1689 1689 2 1742900 1998700 2531200 0 0 0 1683400 1440900 1942000 0 0 951000 0 0 0 LQGNAAVPLIPK MKKIREEEALAKQNKLQGNAAVPLIPKTAN QNKLQGNAAVPLIPKTANA___________ K L Q P K T 2 0 1 0 0 1 0 1 0 1 2 1 0 0 2 0 0 0 0 1 0 0 12 0 1219.7289 Q9SKC9 Q9SKC9 88 99 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 yes yes 2 1.9005E-08 83.614 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 242910000 2073300 1900100 2162600 9069400 14184000 9670900 24437000 21289000 20984000 18203000 27361000 38022000 23985000 12293000 17278000 286 214 294 3418;3419;3420;3421;3422;3423;3424;3425;3426;3427;3428;3429;3430;3431;3432 1690;1691;1692;1693;1694 1690 1 2073300 1794200 1395800 4432000 8748700 9501900 3963400 4270900 4818400 9238900 9227600 6279100 8793400 11610000 7418000 LQGNAAVPLIPKTANA MKKIREEEALAKQNKLQGNAAVPLIPKTAN QGNAAVPLIPKTANA_______________ K L Q N A - 4 0 2 0 0 1 0 1 0 1 2 1 0 0 2 0 1 0 0 1 0 0 16 1 1576.8937 Q9SKC9 Q9SKC9 88 103 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 yes yes 2 0.023181 81.338 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 71979000 1513500 0 1515200 1881500 0 0 14294000 12362000 11137000 0 4218700 7996100 8512600 2974200 5575100 287 214 295 3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443 1695 1695 0 1513500 0 977960 919450 0 0 2318300 2480000 2557300 0 1422800 1320500 3120900 2809000 2393600 LSGGDHIHAGTVVGKLEGDR KNHGMHFRVLAKALRLSGGDHIHAGTVVGK HIHAGTVVGKLEGDRESTLGFVDLLRDDYV R L S D R E 1 1 0 2 0 0 1 5 2 1 2 1 0 0 0 1 1 0 0 2 0 0 20 1 2017.0341 O03042 O03042 320 339 rbcL Ribulose bisphosphate carboxylase large chain yes yes 4 0.0002161 41.348 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 62125000 0 0 2801600 5670800 2434500 1595100 10472000 10714000 7398000 0 7512100 10180000 0 3346700 0 288 64 296 3444;3445;3446;3447;3448;3449;3450;3451;3452;3453 1696;1697 1696 2 0 0 1808200 2771200 1501600 1567300 1698400 2149500 1698800 0 2533500 1681100 0 3160700 0 LSSPATLNSR NFNGNTLDNDIMLIKLSSPATLNSRVATVS IMLIKLSSPATLNSRVATVSLPRSCAAAGT K L S S R V 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 3 1 0 0 0 0 0 10 0 1044.5564 CON__P00761 CON__P00761 98 107 yes yes 2 8.1719E-21 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 635150000 6561500 11971000 31431000 30526000 14527000 0 137070000 67157000 45211000 15487000 34258000 154530000 28147000 14668000 43600000 + 289 32 297 3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471 1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737 1736 40 6561500 11304000 20286000 14918000 8960700 0 22232000 13473000 10382000 7860200 11554000 25520000 10319000 13854000 18719000 LTELLK KLVDNPKDRLEAKQKLTELLKALEERLTRS KDRLEAKQKLTELLKALEERLTRSELRVYT K L T L K A 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 6 0 715.44799 F4J0F5;Q9LK19 F4J0F5 96 101 At3g28870;At3g24260 yes no 2 9.7768E-55 130.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 150060000 0 4224300 13311000 10631000 5889600 0 46814000 27891000 26847000 4922400 0 0 0 0 9525700 290 49 298 3472;3473;3474;3475;3476;3477;3478;3479;3480 1738 1738 0 0 3988700 8591300 5195300 3632800 0 7592800 5595400 6164900 2498300 0 0 0 0 4089800 LTLGIISEPISEINKSWLVLSTICPPVHRK L T R K 0 1 1 0 1 0 2 1 1 5 4 2 0 0 3 4 2 1 0 2 0 0 30 2 3342.8738 REV__Q9LSX5 yes yes 4 0.010712 21.255 By MS/MS By matching By MS/MS 2 1 2 100150000 0 0 0 0 0 0 58719000 10739000 30689000 0 0 0 0 0 0 + 291 239 299 3481;3482;3483;3484;3485 1739;1740 1739 2 0 0 0 0 0 0 9523700 2154400 7047100 0 0 0 0 0 0 LVLTPAAVEFLNAR TPRTLNLFDILNADKLVLTPAAVEFLNARY KLVLTPAAVEFLNARYGVDAVEEEDDDEDE K L V A R Y 3 1 1 0 0 0 1 0 0 0 3 0 0 1 1 0 1 0 0 2 0 0 14 0 1512.8664 Q2V4Q4;Q3EDH2;O50061 Q2V4Q4 247 260 RPL4 50S ribosomal protein L4, chloroplastic yes no 2 3.5997E-14 87.308 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 11127000 602890 819810 1357000 0 0 0 3305900 2086500 1654900 0 0 0 0 0 1299700 292 73 300 3486;3487;3488;3489;3490;3491;3492 1741 1741 1 602890 774110 875810 0 0 0 536190 418580 380020 0 0 0 0 0 558020 MDGIKYAVFTDK ______________________________ ______________________________ - M D D K S 1 0 0 2 0 0 0 1 0 1 0 2 1 1 0 0 1 0 1 1 0 0 12 1 1386.6853 P61845 P61845 1 12 rpl23-A 50S ribosomal protein L23, chloroplastic yes yes 2;3 1.0168E-31 128.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 433540000 9769400 11165000 28288000 11183000 0 0 117290000 78679000 64382000 7739000 11750000 28643000 20139000 10992000 33516000 293 131 301 3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510;3511;3512;3513;3514;3515 1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759 1757 26 15 9769400 10542000 18258000 5465000 0 0 19024000 15785000 14784000 3927800 3962700 4730200 7383500 10382000 14390000 MDSQIKHAVVVKVMGR ______________________________ DSQIKHAVVVKVMGRTGSRGQVTQVRVKFT - M D G R T 1 1 0 1 0 1 0 1 1 1 0 2 2 0 0 1 0 0 0 4 0 0 16 2 1796.9753 Q9SR73;P34789 Q9SR73 1 16 RPS28A;RPS28C 40S ribosomal protein S28-1;40S ribosomal protein S28-2 yes no 3;4 1.3391E-40 91.202 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 5 3 3 3 1 5 4 4 2 2 2 403460000 19980000 6021500 12129000 11964000 2090400 0 108460000 109630000 81488000 11073000 0 32556000 0 0 8067400 294 96 302;303;304 3516;3517;3518;3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529;3530;3531;3532;3533;3534;3535;3536;3537;3538;3539;3540;3541;3542;3543;3544;3545;3546;3547;3548;3549 1760;1761;1762;1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775 1773 18;19 16 19980000 5685700 7827900 5846800 1289400 0 17591000 21994000 18712000 5620000 0 5376300 0 0 3463700 MEETAKPLGFNVR TRFTSQRSASEIMSKMEETAKPLGFNVRKD SKMEETAKPLGFNVRKDNYKIKMKGDKSGR K M E V R K 1 1 1 0 0 0 2 1 0 0 1 1 1 1 1 0 1 0 0 1 0 0 13 1 1490.7551 Q9MAM1 Q9MAM1 361 373 CIPK9 CBL-interacting serine/threonine-protein kinase 9 yes yes 3 0.00012964 58.676 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 43636000 0 0 0 0 0 0 8046400 21587000 14002000 0 0 0 0 0 0 295 200 305 3550;3551;3552;3553 1776;1777;1778 1777 3 0 0 0 0 0 0 1305000 4330800 3215400 0 0 0 0 0 0 METPSSAKRVTR ______________________________ ______________________________ - M E T R S 1 2 0 0 0 0 1 0 0 0 0 1 1 0 1 2 2 0 0 1 0 0 12 2 1361.7085 Q6DYC8 Q6DYC8 1 12 At3g51230 yes yes 2;3 0.00027029 70.919 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 2 1 1 2 2 1625000000 97031000 77538000 156590000 55519000 43589000 22225000 121490000 232270000 142690000 18861000 36383000 182550000 254350000 0 183910000 296 154 306 3554;3555;3556;3557;3558;3559;3560;3561;3562;3563;3564;3565;3566;3567;3568;3569;3570;3571;3572;3573;3574;3575;3576 1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789 1786 10 97031000 73215000 101070000 27131000 26886000 21837000 19705000 46598000 32765000 9572400 12271000 30146000 93249000 0 78960000 MEVPGSSKKMIATQEEMSAAK ______________________________ SKKMIATQEEMSAAKIALGSRDMCAHLLIP - M E A K I 3 0 0 0 0 1 3 1 0 1 0 3 3 0 1 3 1 0 0 1 0 0 21 2 2252.0851 Q9SKC9 Q9SKC9 1 21 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 yes yes 3 2.0581E-08 52.814 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 160330000 4319900 3780600 0 13040000 9755900 2913000 0 0 55319000 0 10991000 15421000 18548000 0 26244000 297 214 307 3577;3578;3579;3580;3581;3582;3583;3584;3585;3586 1790 1790 38;39;40 1 4319900 3569800 0 6372400 6017500 2862100 0 0 12703000 0 3706900 2546600 6800200 0 11268000 MGNITPTTGTQGQIR GTQTFFNAFVEAMNRMGNITPTTGTQGQIR MGNITPTTGTQGQIRLNCRVVNSNSLLHDV R M G I R L 0 1 1 0 0 2 0 3 0 2 0 0 1 0 1 0 4 0 0 0 0 0 15 0 1573.7882 Q9SMU8;P24101 Q9SMU8 314 328 PER34;PER33 Peroxidase 34;Peroxidase 33 yes no 2 2.8005E-44 103.55 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 48014000 0 0 0 3510800 3221900 4044000 3867300 6821600 3834100 3218100 4495800 12765000 0 0 2234900 298 218 308 3587;3588;3589;3590;3591;3592;3593;3594;3595;3596 1791;1792 1791 41 2 0 0 0 1715600 1987300 3973400 627230 1368500 880420 1633300 1516200 2108100 0 0 959540 MLTETPFRPR ______________________________ ______________________________ - M L P R E 0 2 0 0 0 0 1 0 0 0 1 0 1 1 2 0 2 0 0 0 0 0 10 1 1246.6492 A8MSE0;Q944S8 A8MSE0 1 10 At4g21105 yes no 3 0.02243 46.891 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 95860000 1345800 1245700 1635600 0 0 0 29957000 23350000 0 0 12692000 23317000 0 2318200 0 299 28 309 3597;3598;3599;3600;3601;3602;3603;3604 1793;1794 1793 3 0 1345800 1176200 1055600 0 0 0 4858700 4684300 0 0 4280500 3850600 0 2189400 0 MPIKTQFIISE PENIARKAISIAASKMPIKTQFIISE____ AASKMPIKTQFIISE_______________ K M P S E - 0 0 0 0 0 1 1 0 0 3 0 1 1 1 1 1 1 0 0 0 0 0 11 1 1305.7003 P56793 P56793 125 135 rpl16 50S ribosomal protein L16, chloroplastic yes yes 2 0.0003483 50.878 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 75112000 1349900 1635000 3355600 0 0 0 25921000 13240000 9862700 2604100 4378600 0 4594600 3535100 4636100 300 124 310 3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615 1795 1795 24 0 1349900 1543800 2165800 0 0 0 4204100 2656100 2264800 1321700 1476700 0 1684500 3338700 1990500 NALETYVYNMK GTPQIEVTFEKIDARNALETYVYNMKNQVS IDARNALETYVYNMKNQVSDKDKLADKLEG R N A M K N 1 0 2 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 2 1 0 0 11 0 1344.6384 F4K007;A0A1P8BF32;Q39043;Q9LKR3 F4K007 516 526 BIP2;MED37F;MED37A Mediator of RNA polymerase II transcription subunit 37f;Mediator of RNA polymerase II transcription subunit 37a yes no 2 0.017203 63.148 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 22347000 0 0 3239800 0 0 0 6644000 6242300 6220600 0 0 0 0 0 0 301 17 311 3616;3617;3618;3619 1796 1796 0 1 0 0 2091000 0 0 0 1077600 1252300 1428400 0 0 0 0 0 0 NAPPDFQNTK FEPTSFTVKADSVSKNAPPDFQNTKLMTRL DSVSKNAPPDFQNTKLMTRLTYTLDEIEGP K N A T K L 1 0 2 1 0 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 0 0 10 0 1130.5356 Q9S841 Q9S841 152 161 PSBO2 Oxygen-evolving enhancer protein 1-2, chloroplastic yes yes 2 0.0017024 65.038 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 20349000 1814600 1159900 0 2494900 3069400 1958100 0 4831000 5021000 0 0 0 0 0 0 302 206 312 3620;3621;3622;3623;3624;3625;3626 1797 1797 1 1814600 1095300 0 1219200 1893200 1923900 0 969190 1153000 0 0 0 0 0 0 NIGLGFKTPR GKGKRPGKGGNRFWKNIGLGFKTPREAIDG NRFWKNIGLGFKTPREAIDGAYVDKKCPFT K N I P R E 0 1 1 0 0 0 0 2 0 1 1 1 0 1 1 0 1 0 0 0 0 0 10 1 1101.6295 P16181;P42733;O65569 P16181 38 47 RPS11A;RPS11C;RPS11B 40S ribosomal protein S11-1;40S ribosomal protein S11-3;40S ribosomal protein S11-2 yes no 3 0.030081 47.198 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 13038000 0 958340 2334400 0 0 0 4350900 2639100 2754900 0 0 0 0 0 0 303 84 313 3627;3628;3629;3630;3631 1798 1798 1 0 904910 1506700 0 0 0 705670 529450 632610 0 0 0 0 0 0 NIIAAPMTDFIK TGGTLERDLAAGVAKNIIAAPMTDFIKNLF VAKNIIAAPMTDFIKNLFEALFS_______ K N I I K N 2 0 1 1 0 0 0 0 0 3 0 1 1 1 1 0 1 0 0 0 0 0 12 0 1332.7112 P30187 P30187 172 183 CML10 Calmodulin-like protein 10 yes yes 2 0.011241 51.995 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 304 92 314 3632 1799 1799 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 NILVIGPVPGQK KIGNLSFQNYRPNKKNILVIGPVPGQKYSE NKKNILVIGPVPGQKYSEITFPILAPDPAT K N I Q K Y 0 0 1 0 0 1 0 2 0 2 1 1 0 0 2 0 0 0 0 2 0 0 12 0 1233.7445 P56771 P56771 146 157 petA Cytochrome f yes yes 2 0.00081259 67.757 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 41186000 0 0 0 1626300 0 1501500 0 2249400 0 5412200 7960500 7828500 6599300 4424400 3583900 305 119 315 3633;3634;3635;3636;3637;3638;3639;3640;3641 1800 1800 1 0 0 0 794750 0 1475300 0 451280 0 2746900 2684800 1292800 2419400 4178600 1538700 NMVTAQGRTDPNQNTGIVIQK QDCDIHARRPNSGQKNMVTAQGRTDPNQNT GRTDPNQNTGIVIQKCRIGATSDLQSVKGS K N M Q K C 1 1 3 1 0 3 0 2 0 2 0 1 1 0 1 0 3 0 0 2 0 0 21 1 2284.1594 O49006 O49006 456 476 PME3 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3 yes yes 3 2.6919E-09 57.499 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 2 1 81415000 1126400 1758200 0 6498400 3870900 5106600 6965800 7317700 0 5786400 0 39389000 0 0 3595900 306 71 316;317 3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652 1801;1802 1801 8 2 1126400 1660200 0 3175700 2387600 5017400 1129800 1468100 0 2936800 0 6504700 0 0 1543900 NTAASVGEITLK GGRGDEEELVKENVKNTAASVGEITLKVTK NVKNTAASVGEITLKVTKSKPETGEVIGVF K N T L K V 2 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 12 0 1202.6507 P23321;Q9S841 P23321 277 288 PSBO1;PSBO2 Oxygen-evolving enhancer protein 1-1, chloroplastic;Oxygen-evolving enhancer protein 1-2, chloroplastic no no 2 3.69E-09 95.099 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 213470000 4478600 4116900 4633300 11597000 5192300 2082800 29611000 36149000 27644000 10296000 15144000 27720000 14765000 5205100 14839000 307 87;206 318 3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667 1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817 1805 13 4478600 3887400 2990400 5667200 3202700 2046400 4802600 7252100 6347900 5225800 5107300 4577700 5413300 4915900 6371200 NVETEADKFR EGAIQQLENARARLRNVETEADKFRVNGYS RARLRNVETEADKFRVNGYSEIEREKLNLI R N V F R V 1 1 1 1 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 10 1 1207.5833 P56759 P56759 87 96 atpF ATP synthase subunit b, chloroplastic yes yes 3 4.2801E-06 67.993 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 12138000 0 0 0 0 0 0 6270500 2198600 1911300 0 0 0 1757300 0 0 308 116 319 3668;3669;3670;3671 1818;1819 1818 2 0 0 0 0 0 0 1017000 441070 438900 0 0 0 644250 0 0 NVGSVVAVDQDPK GSKVKILRRESYWFKNVGSVVAVDQDPKTR FKNVGSVVAVDQDPKTRYPVVVRFAKVNYA K N V P K T 1 0 1 2 0 1 0 1 0 0 0 1 0 0 1 1 0 0 0 4 0 0 13 0 1326.6779 Q9S714;Q9S831 Q9S831 99 111 PSAE2;PSAE1 Photosystem I reaction center subunit IV B, chloroplastic;Photosystem I reaction center subunit IV A, chloroplastic no no 2 1.023E-32 118.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 174370000 8054600 9135500 11267000 10360000 5372000 0 53063000 26811000 26931000 0 0 14621000 0 0 8757300 309 205;201 320 3672;3673;3674;3675;3676;3677;3678;3679;3680;3681 1820;1821;1822;1823;1824;1825 1825 5 8054600 8626200 7272100 5062600 3313500 0 8606400 5378700 6184100 0 0 2414600 0 0 3759900 NVGSVVAVDQDPKTR GSKVKILRRESYWFKNVGSVVAVDQDPKTR NVGSVVAVDQDPKTRYPVVVRFAKVNYANI K N V T R Y 1 1 1 2 0 1 0 1 0 0 0 1 0 0 1 1 1 0 0 4 0 0 15 1 1583.8267 Q9S714;Q9S831 Q9S831 99 113 PSAE2;PSAE1 Photosystem I reaction center subunit IV B, chloroplastic;Photosystem I reaction center subunit IV A, chloroplastic no no 3 0.0074101 50.563 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 141140000 0 0 1577600 6340100 5233200 2679500 15582000 15503000 13597000 10652000 11277000 34897000 10416000 2599500 10791000 310 205;201 321 3682;3683;3684;3685;3686;3687;3688;3689;3690;3691;3692;3693;3694 1826;1827 1827 1 0 0 1018200 3098300 3227900 2632700 2527200 3110100 3122300 5406300 3803100 5762900 3818800 2455100 4633100 NVGSVVAVDQDPKTRYPVVVR GSKVKILRRESYWFKNVGSVVAVDQDPKTR AVDQDPKTRYPVVVRFAKVNYANISTNNYA K N V V R F 1 2 1 2 0 1 0 1 0 0 0 1 0 0 2 1 1 0 1 7 0 0 21 2 2297.2492 Q9S714;Q9S831 Q9S831 99 119 PSAE2;PSAE1 Photosystem I reaction center subunit IV B, chloroplastic;Photosystem I reaction center subunit IV A, chloroplastic no no 2;3;4 2.1659E-118 125.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 12 14 21 16 9 30 33 33 11 20 20 15 11 26 21412000000 264740000 305760000 352330000 831990000 692660000 231910000 4648400000 3759400000 3030300000 891780000 1403100000 2190900000 1157400000 497440000 1153700000 311 205;201 322 3695;3696;3697;3698;3699;3700;3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754;3755;3756;3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844;3845;3846;3847;3848;3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860;3861;3862;3863;3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982 1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012;2013;2014;2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041;2042;2043 1976 197 264740000 288720000 227400000 406580000 427240000 227860000 753930000 754210000 695850000 452610000 473210000 361810000 424330000 469800000 495340000 NVSPIEVK PGREGVGLNMRSIGKNVSPIEVKFTGKQSY NMRSIGKNVSPIEVKFTGKQSYDL______ K N V V K F 0 0 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 2 0 0 8 0 884.49673 Q9S7H1;Q9SA56 Q9S7H1 192 199 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2 0.01058 92.692 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 258090000 3373600 4702400 7046200 17197000 14199000 6932400 16377000 15087000 13010000 19489000 24577000 68349000 26409000 0 21341000 312 202;207 323 3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995;3996 2044 2044 0 3373600 4440200 4547700 8403900 8758300 6811300 2656200 3026800 2987600 9891200 8288900 11287000 9682100 0 9162700 NVSPIEVKFTGK PGREGVGLNMRSIGKNVSPIEVKFTGKQSY IGKNVSPIEVKFTGKQSYDL__________ K N V G K Q 0 0 1 0 0 0 1 1 0 1 0 2 0 1 1 1 1 0 0 2 0 0 12 1 1317.7293 Q9S7H1;Q9SA56 Q9S7H1 192 203 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3 0.0011001 63.624 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 20317000 0 0 0 3173200 0 0 4914600 5557300 3827300 0 0 0 0 0 2845100 313 202;207 324 3997;3998;3999;4000;4001 2045 2045 1 0 0 0 1550700 0 0 797100 1114900 878850 0 0 0 0 0 1221500 NVVDGSTTFHSATVAAVGER FMGDGRTRTIITGSRNVVDGSTTFHSATVA STTFHSATVAAVGERFLARDITFQNTAGPS R N V E R F 3 1 1 1 0 0 1 2 1 0 0 0 0 1 0 2 3 0 0 4 0 0 20 0 2016.9865 O49006;Q42534 O49006 349 368 PME3;PME2 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3;Pectinesterase 2 yes no 3 6.4299E-86 108.34 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 99358000 2308600 2312000 2516100 8964700 6501200 3809400 12963000 9919700 6302300 5694000 11306000 17764000 0 3107200 5889200 314 71 325 4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015 2046;2047;2048;2049;2050;2051;2052 2052 7 2308600 2183100 1623900 4380900 4010000 3742800 2102500 1990100 1447200 2889900 3813200 2933500 0 2934600 2528500 PAAYDGTIR VVDDTVEPDEKETSKPAAYDGTIRVSGNLV EKETSKPAAYDGTIRVSGNLVAFLEKIETE K P A I R V 2 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 9 0 962.48214 F4J1N5 F4J1N5 305 313 TIF3C2 Eukaryotic translation initiation factor 3 subunit C yes yes 2 0.0089358 72.021 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 170140000 0 0 11715000 23970000 0 0 0 60839000 67434000 0 0 0 0 0 6187100 315 50 326 4016;4017;4018;4019;4020 2053 2053 1 0 0 7560800 11714000 0 0 0 12205000 15485000 0 0 0 0 0 2656400 PPSFTG DNTRQVQCISFIAYKPPSFTG_________ QCISFIAYKPPSFTG_______________ K P P T G - 0 0 0 0 0 0 0 1 0 0 0 0 0 1 2 1 1 0 0 0 0 0 6 0 604.28568 P10795 P10795 175 180 RBCS-1A Ribulose bisphosphate carboxylase small chain 1A, chloroplastic yes yes 1 1.0015E-70 126.25 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 17041000 2560900 0 4626100 0 0 0 5217100 0 0 4636600 0 0 0 0 0 316 82 327 4021;4022;4023;4024 2054;2055;2056;2057 2055 3 2560900 0 2985700 0 0 0 846170 0 0 2353200 0 0 0 0 0 PPTSPIPNSTTSVSPAK KPRPLSPYASYEDLKPPTSPIPNSTTSVSP TSPIPNSTTSVSPAKSKEVDATQVPVEANV K P P A K S 1 0 1 0 0 0 0 0 0 1 0 1 0 0 5 4 3 0 0 1 0 0 17 0 1679.873 Q8H0U5 Q8H0U5 388 404 TIC62 Protein TIC 62, chloroplastic yes yes 2 5.7909E-21 94.692 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44581000 0 0 0 0 2011100 0 0 0 0 6599500 6423000 13383000 8202900 3578900 4382900 317 159 328 4025;4026;4027;4028;4029;4030;4031 2058;2059;2060 2058 3 0 0 0 0 1240400 0 0 0 0 3349500 2166200 2210100 3007400 3380100 1881800 PPTSPLPSPVTNH KPRPLSPYTMYADMKPPTSPLPSPVTNH__ MKPPTSPLPSPVTNH_______________ K P P N H - 0 0 1 0 0 0 0 0 1 0 1 0 0 0 5 2 2 0 0 1 0 0 13 0 1342.6881 Q8H0U5 Q8H0U5 629 641 TIC62 Protein TIC 62, chloroplastic yes yes 2 7.6512E-66 107.15 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 147520000 1879900 1621500 3810000 6052900 8834200 8596400 5544000 5411900 4430900 25306000 18797000 41178000 7103500 3983900 4969700 318 159 329 4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046 2061;2062;2063;2064;2065;2066 2063 6 1879900 1531100 2459000 2957900 5449000 8446200 899190 1085700 1017500 12844000 6339500 6800200 2604300 3762600 2133700 PTIKQLIR ______________________________ ______________________________ M P T I R N 0 1 0 0 0 1 0 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 8 1 967.61785 P62126 P62126 2 9 rps12-A 30S ribosomal protein S12, chloroplastic yes yes 2 0.002157 103.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 119720000 0 0 0 9736800 0 0 22039000 21512000 21799000 0 6714900 20919000 6615800 3291400 7092700 319 135 330 4047;4048;4049;4050;4051;4052;4053;4054;4055 2067;2068;2069;2070 2068 3 0 0 0 4758200 0 0 3574500 4315700 5005600 0 2264700 3454600 2425500 3108600 3045200 QGPGEQAAGSASEAK FIKKMEQEKLQKLARQGPGEQAAGSASEAK QGPGEQAAGSASEAKVAGATASASAESGPK R Q G A K V 4 0 0 0 0 2 2 3 0 0 0 1 0 0 1 2 0 0 0 0 0 0 15 0 1386.6375 Q9ZUX4 Q9ZUX4 46 60 Uncharacterized protein At2g27730, mitochondrial yes yes 2 0 138.66 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 132330000 0 2604800 6171100 9552700 11667000 6037100 21035000 0 0 6958100 15007000 30116000 10676000 0 12509000 320 235 331 4056;4057;4058;4059;4060;4061;4062;4063;4064;4065;4066 2071;2072;2073 2073 3 0 2459600 3982900 4668200 7196500 5931700 3411700 0 0 3531500 5061400 4973400 3914000 0 5370800 QGPGEQAAGSASEAKVAGATASASAESGPK FIKKMEQEKLQKLARQGPGEQAAGSASEAK VAGATASASAESGPKVSEDKNRNYAVVAGV R Q G P K V 9 0 0 0 0 2 3 5 0 0 0 2 0 0 2 5 1 0 0 1 0 0 30 1 2671.2685 Q9ZUX4 Q9ZUX4 46 75 Uncharacterized protein At2g27730, mitochondrial yes yes 3 0.00014313 29.736 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 40120000 0 0 0 2463900 0 3676400 0 0 0 5755600 11874000 16349000 0 0 0 321 235 332 4067;4068;4069;4070;4071 2074 2074 1 0 0 0 1204100 0 3612100 0 0 0 2921200 4004800 2700000 0 0 0 QGPNLNGLFGR KCAQCHTVEAGAGHKQGPNLNGLFGRQSGT AGHKQGPNLNGLFGRQSGTTAGYSYSAANK K Q G G R Q 0 1 2 0 0 1 0 3 0 0 2 0 0 1 1 0 0 0 0 0 0 0 11 0 1171.6098 B3H4Y9;O23138;Q9T0G2 B3H4Y9 37 47 CYTC-1;CYTC-2 Cytochrome c-1;Cytochrome c-2 no no 2 0.022056 47.067 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 24581000 0 0 0 0 0 0 4509600 2785300 2178000 0 3240900 11053000 0 814440 0 322 29;229 333 4072;4073;4074;4075;4076;4077 2075 2075 0 0 0 0 0 0 0 731420 558780 500140 0 1093000 1825300 0 769200 0 QGRTLYGFGG RKTVTAMDVVYALKRQGRTLYGFGG_____ YALKRQGRTLYGFGG_______________ R Q G G G - 0 1 0 0 0 1 0 4 0 0 1 0 0 1 0 0 1 0 1 0 0 0 10 1 1054.5196 P59259;A8MRV1 P59259 94 103 At1g07660 Histone H4 yes no 2 0.0001182 84.244 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 762100000 18524000 20038000 41426000 40276000 29459000 16526000 132820000 98138000 86346000 29998000 50738000 116820000 32539000 9818800 38638000 323 129 334 4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092 2076;2077;2078;2079;2080;2081;2082;2083;2084 2077 0 18524000 18921000 26737000 19682000 18171000 16237000 21542000 19688000 19828000 15225000 17112000 19291000 11929000 9273300 16589000 QIGAYDDAEK AEAVEKTSAAIKVLKQIGAYDDAEKAKNSI IKVLKQIGAYDDAEKAKNSIGIRPGKGKMR K Q I E K A 2 0 0 2 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 10 0 1108.5037 F4KDU5;P49691;Q2V3X4;Q9SF40 Q2V3X4 178 187 At5g02870;RPL4D;At3g09630;RPL4A 60S ribosomal protein L4-2;60S ribosomal protein L4-1 no no 2 0.0014625 47.082 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 29294000 770120 0 1262900 0 0 0 9657600 9632600 7970400 0 0 0 0 0 0 324 141;63 335 4093;4094;4095;4096;4097 2085;2086 2085 2 770120 0 815110 0 0 0 1566400 1932500 1830200 0 0 0 0 0 0 QIGAYDDAEKAK AEAVEKTSAAIKVLKQIGAYDDAEKAKNSI VLKQIGAYDDAEKAKNSIGIRPGKGKMRNR K Q I A K N 3 0 0 2 0 1 1 1 0 1 0 2 0 0 0 0 0 0 1 0 0 0 12 1 1307.6357 F4KDU5;P49691;Q2V3X4;Q9SF40 Q2V3X4 178 189 At5g02870;RPL4D;At3g09630;RPL4A 60S ribosomal protein L4-2;60S ribosomal protein L4-1 no no 2;3 0 103.83 By MS/MS By MS/MS By matching 2 2 1 129970000 0 0 0 0 0 0 60366000 41949000 27658000 0 0 0 0 0 0 325 141;63 336 4098;4099;4100;4101;4102 2087;2088;2089 2088 3 0 0 0 0 0 0 9790900 8415700 6351000 0 0 0 0 0 0 QILSGVNYASAAAGIR GFNGYIPAYNTVSGRQILSGVNYASAAAGI ILSGVNYASAAAGIREETGRQLGQRISFSG R Q I I R E 4 1 1 0 0 1 0 2 0 2 1 0 0 0 0 2 0 0 1 1 0 0 16 0 1589.8526 A0A1P8ASL8;Q9C7N4 A0A1P8ASL8 169 184 GDSL esterase/lipase At1g29670 yes no 2 0.0052743 51.927 By MS/MS By matching 1 1 10685000 0 0 0 2469400 0 0 0 0 0 0 0 8216100 0 0 0 326 6 337 4103;4104 2090 2090 1 0 0 0 1206800 0 0 0 0 0 0 0 1356800 0 0 0 QLDASGKPDSFTGK QLPGGERVPFLFTVKQLDASGKPDSFTGKF KQLDASGKPDSFTGKFLVPSYRGSSFLDPK K Q L G K F 1 0 0 2 0 1 0 2 0 0 1 2 0 1 1 2 1 0 0 0 0 0 14 1 1449.71 P23321 P23321 217 230 PSBO1 Oxygen-evolving enhancer protein 1-1, chloroplastic yes yes 3 0.014453 33.782 By MS/MS 1 3980300 0 0 0 0 0 0 0 0 0 0 0 0 0 3980300 0 327 87 338 4105 2091 2091 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3759100 0 QNKAVILLQGR ______________________________ KFLKQNKAVILLQGRYAGKKAVIIKSFDDG K Q N G R Y 1 1 1 0 0 2 0 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 11 1 1238.7459 A8MS28;Q8LCL3;P51419 A8MS28 7 17 At4g15000;RPL27B;RPL27C 60S ribosomal protein L27-2;60S ribosomal protein L27-3 yes no 3 0.0086348 47.603 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 14736000 508330 0 0 990750 0 0 6469000 3382200 3385800 0 0 0 0 0 0 328 26 339 4106;4107;4108;4109;4110 2092 2092 1 508330 0 0 484160 0 0 1049200 678520 777470 0 0 0 0 0 0 QTVAVGVIK SEYPPLGRFAVRDMRQTVAVGVIKSVDKKD AVRDMRQTVAVGVIKSVDKKDPTGAKVTKA R Q T I K S 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 3 0 0 9 0 913.55967 F4HUA0;Q8W4H7;Q8GTY0;Q0WL56;P0DH99 F4HUA0 342 350 At1g07930;A2;A4;A3;A1 Elongation factor 1-alpha 2;Elongation factor 1-alpha 4;Elongation factor 1-alpha 3;Elongation factor 1-alpha 1 yes no 2 0.0087814 44.611 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 248530000 4692000 3931800 2100900 19015000 9124300 5474400 12376000 15661000 11939000 21690000 30600000 67486000 19998000 4409600 20030000 329 36 340 4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125 2093;2094 2094 1 4692000 3712600 1356000 9292500 5628000 5378700 2007200 3141800 2741600 11008000 10320000 11145000 7331600 4164700 8599600 QVHPDIGISSK KSVETYKIYIFKVLKQVHPDIGISSKAMGI KVLKQVHPDIGISSKAMGIMNSFINDIFEK K Q V S K A 0 0 0 1 0 1 0 1 1 2 0 1 0 0 1 2 0 0 0 1 0 0 11 0 1179.6248 Q9LZT0;P40283;O23629;Q9FFC0;Q9LQQ4;Q9SI96 Q9LZT0 68 78 H2B Histone H2B.7;Histone H2B.11;Histone H2B.6;Histone H2B.10;Histone H2B.1;Histone H2B.3 yes no 2;3 4.8568E-10 71.877 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 1 2 320890000 0 0 0 10867000 28987000 15888000 0 61440000 65843000 22449000 28171000 0 38286000 0 48955000 330 70 341 4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140 2095;2096;2097 2096 3 0 0 0 5310500 17880000 15610000 0 12326000 15119000 11393000 9501000 0 14037000 0 21018000 QVIEKYYSR ______________________________ VKKSSRQVIEKYYSRMTLDFHTNKKILEEV R Q V S R M 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 2 1 0 0 9 1 1184.619 Q9SQZ1;Q9SJ36;Q9LZ17;P49205 Q9SQZ1 15 23 RPS17C;RPS17B;RPS17D;RPS17A 40S ribosomal protein S17-3;40S ribosomal protein S17-2;40S ribosomal protein S17-4;40S ribosomal protein S17-1 yes no 2 0.012351 68.915 By matching By MS/MS By MS/MS 1 1 1 22787000 0 1959100 0 0 0 0 0 12941000 7886800 0 0 0 0 0 0 331 106 342 4141;4142;4143 2098;2099 2099 2 0 1849800 0 0 0 0 0 2596300 1811000 0 0 0 0 0 0 RANLNDFDRFK WEKSSWGRKLIVQKRRANLNDFDRFKIMLA VQKRRANLNDFDRFKIMLAKIKKAGVVRQE R R A F K I 1 2 2 2 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 11 2 1394.7055 Q9T043 Q9T043 99 109 RPL14B 60S ribosomal protein L14-2 yes yes 3 2.4282E-25 70.056 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 332 228 343 4144 2100 2100 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RELQETVQYPVEHPEKFEK PNVSWNDIGGLENVKRELQETVQYPVEHPE ETVQYPVEHPEKFEKFGMSPSKGVLFYGPP K R E E K F 0 1 0 0 0 2 5 0 1 0 1 2 0 1 2 0 1 0 1 2 0 0 19 2 2385.1965 P54609;Q9LZF6;Q9SCN8 P54609 490 508 CDC48A;CDC48E;CDC48D Cell division control protein 48 homolog A;Cell division control protein 48 homolog E;Cell division control protein 48 homolog D yes no 4 0.0012273 28.869 By MS/MS By MS/MS 1 1 5939400 2525900 0 3413400 0 0 0 0 0 0 0 0 0 0 0 0 333 114 344 4145;4146 2101 2101 1 2525900 0 2203100 0 0 0 0 0 0 0 0 0 0 0 0 RGPQEPPKLGPR TYVSATSTGEVLPIKRGPQEPPKLGPRGKL PIKRGPQEPPKLGPRGKL____________ K R G P R G 0 2 0 0 0 1 1 2 0 0 1 1 0 0 4 0 0 0 0 0 0 0 12 2 1330.747 Q9SUI7;Q9SUI6 Q9SUI7 131 142 PSAH1;PSAH2 Photosystem I reaction center subunit VI-1, chloroplastic;Photosystem I reaction center subunit VI-2, chloroplastic yes no 3 1.5392E-11 70.1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 531470000 0 0 0 25080000 19810000 31257000 61432000 0 64378000 33824000 59744000 75323000 84194000 0 76429000 334 223 345 4147;4148;4149;4150;4151;4152;4153;4154;4155;4156 2102;2103;2104;2105;2106;2107 2104 6 0 0 0 12256000 12219000 30711000 9963800 0 14783000 17167000 20149000 12439000 30867000 0 32814000 RLATSGANFAR YLERSKTNKELNDKKRLATSGANFARAFTV NDKKRLATSGANFARAFTVQFGSCKFPENF K R L A R A 3 2 1 0 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 1 1162.6207 F4KC80;P49107 F4KC80 107 117 PSAN Photosystem I reaction center subunit N, chloroplastic yes no 2;3 9.0943E-27 84.615 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 3 1 3 3 3 2 1 2 2 1 1 3 361780000 4336700 9612600 16608000 2701600 0 32756000 30060000 33591000 5797300 11281000 48769000 95328000 10874000 3222600 56841000 335 61 346 4157;4158;4159;4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177;4178;4179;4180;4181;4182;4183;4184;4185;4186;4187;4188 2108;2109;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122;2123 2118 16 4336700 9076700 10719000 1320200 0 32184000 4875500 6738900 1331200 5725400 16448000 15743000 3986600 3043600 24404000 RLVAAIDGQPDPGGPTVK ATDEKYNEAVYSSAKRLVAAIDGQPDPGGP AAIDGQPDPGGPTVKDSKRESNFKTKEETD K R L V K D 2 1 0 2 0 1 0 3 0 1 1 1 0 0 3 0 1 0 0 2 0 0 18 1 1789.9686 Q9ZVL6 Q9ZVL6 221 238 UPF0603 protein At1g54780, chloroplastic yes yes 3 5.4823E-05 52.823 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 23667000 0 0 0 0 1752800 0 6407700 5552400 0 0 6382800 0 0 0 3571100 336 237 347 4189;4190;4191;4192;4193 2124;2125 2125 2 0 0 0 0 1081200 0 1039300 1113900 0 0 2152700 0 0 0 1533200 RLVAAIDGQPDPGGPTVKDSK ATDEKYNEAVYSSAKRLVAAIDGQPDPGGP DGQPDPGGPTVKDSKRESNFKTKEETDEKR K R L S K R 2 1 0 3 0 1 0 3 0 1 1 2 0 0 3 1 1 0 0 2 0 0 21 2 2120.1226 Q9ZVL6 Q9ZVL6 221 241 UPF0603 protein At1g54780, chloroplastic yes yes 3;4 1.2399E-05 44.816 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 54242000 0 0 0 0 0 0 0 0 0 10766000 8089400 0 13809000 13021000 8556500 337 237 348 4194;4195;4196;4197;4198;4199;4200;4201 2126;2127;2128 2128 3 0 0 0 0 0 0 0 0 0 5464200 2728200 0 5062800 12298000 3673700 RMEVVEETCKHMEEVVVK EAYKHMEPVVVSSYRRMEVVEETCKHMEEV VVEETCKHMEEVVVKYRHKEEVVESYRHKE R R M V K Y 0 1 0 0 1 0 5 0 1 0 0 2 2 0 0 0 1 0 0 5 0 0 18 2 2174.0534 A0A1P8AQ97;A0A1P8AQ91;A0A1P8AQ79;A0A1P8AQ67 A0A1P8AQ97 101 118 yes no 3 0.0069125 9.2834 By MS/MS 1 400350000 0 0 0 0 0 0 0 0 0 0 0 400350000 0 0 0 338 4 349 4202 2129 2129 1 0 0 0 0 0 0 0 0 0 0 0 66115000 0 0 0 RSGLRPVTIDLK SLSEALERTYKSGFKRSGLRPVTIDLKDGT GFKRSGLRPVTIDLKDGTVVNFWVSKTKPE K R S L K D 0 2 0 1 0 0 0 1 0 1 2 1 0 0 1 1 1 0 0 1 0 0 12 2 1353.8092 Q8RXC1 Q8RXC1 21 32 At1g78210 yes yes 3 0.011896 26.118 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 159110000 6505100 5027000 9979900 8728800 6455600 6038700 5779500 9864300 7518400 15654000 16167000 31677000 17432000 6576600 5701700 339 161 350 4203;4204;4205;4206;4207;4208;4209;4210;4211;4212;4213;4214;4215;4216;4217 2130 2130 0 6505100 4746700 6441200 4265600 3981900 5933200 937380 1979000 1726400 7944900 5452400 5231300 6390800 6211300 2448000 RTNPTTSNPEVSIR ______________________________ MRTNPTTSNPEVSIREKKNLGRIAQIIGPV M R T I R E 0 2 2 0 0 0 1 0 0 1 0 0 0 0 2 2 3 0 0 1 0 0 14 1 1570.8063 P19366 P19366 2 15 atpB ATP synthase subunit beta, chloroplastic yes yes 2;3 0 187.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 1 2 2 2 2 2 1066000000 17867000 24399000 0 80346000 54224000 27621000 107930000 97256000 83768000 35704000 79753000 271260000 79237000 23862000 82730000 340 86 351 4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232;4233;4234;4235;4236;4237;4238;4239;4240;4241;4242;4243 2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151 2135 20 17867000 23039000 0 39264000 33446000 27139000 17506000 19511000 19235000 18121000 26897000 44796000 29050000 22537000 35519000 RTNPTTSNPEVSIREK ______________________________ TNPTTSNPEVSIREKKNLGRIAQIIGPVLD M R T E K K 0 2 2 0 0 0 2 0 0 1 0 1 0 0 2 2 3 0 0 1 0 0 16 2 1827.9439 P19366 P19366 2 17 atpB ATP synthase subunit beta, chloroplastic yes yes 2;3 1.3523E-56 103.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1 1 2 2 2 1 1 1 1172100000 2741600 8757100 0 56183000 42234000 35775000 128760000 117680000 91417000 63126000 106120000 329950000 102840000 2259300 84272000 341 86 352 4244;4245;4246;4247;4248;4249;4250;4251;4252;4253;4254;4255;4256;4257;4258;4259;4260;4261;4262;4263;4264 2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166 2162 15 2741600 8268900 0 27456000 26051000 35150000 20883000 23609000 20992000 32039000 35791000 54488000 37702000 2133800 36182000 RVEPYVTYGYPNLK GVFLKVNKATVNMLRRVEPYVTYGYPNLKS RRVEPYVTYGYPNLKSVKELIYKRGYGKLN R R V L K S 0 1 1 0 0 0 1 1 0 0 1 1 0 0 2 0 1 0 3 2 0 0 14 1 1697.8777 F4IT48;P60039;Q9LHP1 F4IT48 134 147 At2g44120;RPL7C;RPL7D 60S ribosomal protein L7-3;60S ribosomal protein L7-4 yes no 3 0.010338 26.711 By MS/MS 1 3227400 0 0 0 0 0 0 3227400 0 0 0 0 0 0 0 0 342 46 353 4265 2167 2167 0 0 0 0 0 0 0 523460 0 0 0 0 0 0 0 0 RVEVKAPGILER VPIDGKGALSDHEQRRVEVKAPGILERKSV EQRRVEVKAPGILERKSVHEPMQTGLKAVD R R V E R K 1 2 0 0 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 2 0 0 12 2 1365.8092 F4IMB5;A0A2P2CLF9;P92549 F4IMB5 400 411 At2g07698;ATPA ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 3 9.7765E-05 57.836 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 48699000 1833800 802650 3362600 0 3385200 0 10998000 6680800 8737000 0 0 12899000 0 0 0 343 20 354 4266;4267;4268;4269;4270;4271;4272;4273;4274 2168;2169;2170;2171;2172;2173;2174;2175 2171 7 1833800 757900 2170300 0 2088000 0 1783800 1340300 2006300 0 0 2130200 0 0 0 RVGGSTHQVPIEIGSTQGKALAIR QAIRGVTPDIAVKARRVGGSTHQVPIEIGS PIEIGSTQGKALAIRWLLGASRKRPGRNMA R R V I R W 2 2 0 0 0 2 1 4 1 3 1 1 0 0 1 2 2 0 0 2 0 0 24 2 2474.3718 P61841 P61841 79 102 rps7-A 30S ribosomal protein S7, chloroplastic yes yes 4 5.3968E-10 48.656 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 27090000 1313800 1580200 2439800 3427900 0 0 7311400 6488900 4528400 0 0 0 0 0 0 344 130 355 4275;4276;4277;4278;4279;4280;4281 2176;2177 2176 2 1313800 1492100 1574700 1675100 0 0 1185800 1301800 1039800 0 0 0 0 0 0 SATLFRPKLIVAGASAYAR LDESTGYIDYDQMEKSATLFRPKLIVAGAS FRPKLIVAGASAYARLYDYARIRKVCNKQK K S A A R L 5 2 0 0 0 0 0 1 0 1 2 1 0 1 1 2 1 0 1 1 0 0 19 2 1991.1316 Q9SZJ5 Q9SZJ5 218 236 SHM1 Serine hydroxymethyltransferase 1, mitochondrial yes yes 3 0.00037027 40.52 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 33301000 0 2461200 4477200 3023700 0 0 11987000 11352000 0 0 0 0 0 0 0 345 227 356 4282;4283;4284;4285;4286 2178 2178 1 0 2324000 2889600 1477600 0 0 1944100 2277400 0 0 0 0 0 0 0 SATLKLPSGEVR RAAGAVAKLIAKEGKSATLKLPSGEVRLIS EGKSATLKLPSGEVRLISKNCSATVGQVGN K S A V R L 1 1 0 0 0 0 1 1 0 0 2 1 0 0 1 2 1 0 0 1 0 0 12 1 1256.7089 P56791 P56791 169 180 rpl2-A 50S ribosomal protein L2, chloroplastic yes yes 3 0.0047341 47.844 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 45775000 2278700 2686200 3913800 4620100 2668600 0 8697800 10313000 0 2618900 0 7978000 0 0 0 346 123 357 4287;4288;4289;4290;4291;4292;4293;4294;4295 2179;2180 2179 2 2278700 2536400 2526000 2257800 1646000 0 1410700 2069000 0 1329200 0 1317500 0 0 0 SDDEHHFEASESGASKTYPQSAGNIRK ______________________________ GASKTYPQSAGNIRKGGHIVIKNRPCKVVE M S D R K G 3 1 1 2 0 1 3 2 2 1 0 2 0 1 1 5 1 0 1 0 0 0 27 2 2947.3333 Q93VP3 Q93VP3 2 28 ELF5A-2 Eukaryotic translation initiation factor 5A-2 yes yes 4 2.9988E-124 83.606 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 54170000 4952500 4157600 0 4714400 0 1476300 0 8859100 0 0 0 30010000 0 0 0 347 167 358 4296;4297;4298;4299;4300;4301 2181;2182 2181 2 4952500 3925800 0 2303800 0 1450500 0 1777300 0 0 0 4955900 0 0 0 SFESGDTTKLK GSVAGASVGVITGVKSFESGDTTKLKINRI TGVKSFESGDTTKLKINRILNSSGQTGRTW K S F L K I 0 0 0 1 0 0 1 1 0 0 1 2 0 1 0 2 2 0 0 0 0 0 11 1 1211.6034 Q38820 Q38820 86 96 TIM23-2 Mitochondrial import inner membrane translocase subunit TIM23-2 yes yes 2 0.00030735 53.166 By MS/MS By MS/MS 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 348 142 359 4302;4303 2183;2184 2183 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 SFVALPVIAR DVVRLEKSRPISKTKSFVALPVIARAARKA ISKTKSFVALPVIARAARKAEAGGDELLGL K S F A R A 2 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 0 0 10 0 1071.6441 P16180 P16180 117 126 RPS17 30S ribosomal protein S17, chloroplastic yes yes 2 0.003927 86.866 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 120750000 5592800 5098100 5313000 16078000 5147300 2704200 17887000 10072000 12425000 3438500 5490200 19978000 3953900 1996500 5579000 349 83 360 4304;4305;4306;4307;4308;4309;4310;4311;4312;4313;4314;4315;4316;4317;4318 2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198 2197 14 5592800 4813900 3429100 7857000 3174900 2656900 2901000 2020600 2853100 1745100 1851600 3299300 1449600 1885600 2395300 SGAGKKIADVAFK ______________________________ ______________________________ M S G F K A 3 0 0 1 0 0 0 2 0 1 0 3 0 1 0 1 0 0 0 1 0 0 13 2 1290.7296 Q2V3P9;Q9FT52 Q2V3P9 2 14 ATPQ ATP synthase subunit d, mitochondrial yes no 3 0.0037608 50.207 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 123190000 4381400 3428800 10370000 0 0 0 43477000 28806000 25743000 0 0 0 0 0 6987000 350 140 361 4319;4320;4321;4322;4323;4324;4325 2199 2199 1 4381400 3237600 6693000 0 0 0 7051500 5779100 5911400 0 0 0 0 0 2999800 SGGEYGDKAGAPADYQPGFRGGAGGAR ERRFGDRDGYRGGPKSGGEYGDKAGAPADY ADYQPGFRGGAGGARQGFGRGAGGFGGGAA K S G A R Q 5 2 0 2 0 1 1 9 0 0 0 1 0 1 2 1 0 0 2 0 0 0 27 2 2568.1742 A8MRV0;Q9FFS8 A8MRV0 88 114 At5g41520;RPS10B 40S ribosomal protein S10-2 yes no 4 1.5188E-21 56.247 By MS/MS By MS/MS By matching 1 1 1 32265000 0 0 0 0 0 0 14226000 10401000 7638000 0 0 0 0 0 0 351 25 362 4326;4327;4328 2200;2201 2200 2 0 0 0 0 0 0 2307300 2086600 1753900 0 0 0 0 0 0 SGKIELPTWTDIVK SPHDFVKAYASHLKRSGKIELPTWTDIVKT RSGKIELPTWTDIVKTGKLKELAPYDPDWY R S G V K T 0 0 0 1 0 0 1 1 0 2 1 2 0 0 1 1 2 1 0 1 0 0 14 1 1585.8716 Q9SGA6 Q9SGA6 26 39 RPS19A 40S ribosomal protein S19-1 yes yes 3 2.5903E-11 45.28 By MS/MS By MS/MS 1 1 7496100 0 0 0 0 0 0 4880700 2615400 0 0 0 0 0 0 0 352 210 363 4329;4330 2202 2202 1 0 0 0 0 0 0 791600 524690 0 0 0 0 0 0 0 SGKYTLGYKSVLK KSHEGINSRLALVMKSGKYTLGYKSVLKSL MKSGKYTLGYKSVLKSLRSSKGKLILISSN K S G L K S 0 0 0 0 0 0 0 2 0 0 2 3 0 0 0 2 1 0 2 1 0 0 13 2 1442.8133 Q9LSA3;Q9C8F7;Q8VZ19 Q9LSA3 24 36 RPL30C;RPL30A;RPL30B 60S ribosomal protein L30-3;Putative 60S ribosomal protein L30-1;60S ribosomal protein L30-2 yes no 3 3.2243E-14 77.124 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 94008000 5484800 5838100 11011000 3583500 0 0 28628000 20336000 17268000 0 0 0 0 0 1859500 353 165 364 4331;4332;4333;4334;4335;4336;4337;4338 2203;2204 2203 2 5484800 5512600 7106400 1751200 0 0 4643200 4079700 3965200 0 0 0 0 0 798350 SIAKELSGTVR SFDDVTEIARIMRPRSIAKELSGTVREILG MRPRSIAKELSGTVREILGTCVSVGCTVDG R S I V R E 1 1 0 0 0 0 1 1 0 1 1 1 0 0 0 2 1 0 0 1 0 0 11 1 1159.6561 P50883;Q9LFH5 P50883 121 131 RPL12A;RPL12B 60S ribosomal protein L12-1;60S ribosomal protein L12-2 yes no 2;3 0.02073 51.346 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 26832000 0 0 0 1623100 0 0 9955900 8668500 6584200 0 0 0 0 0 0 354 110 365 4339;4340;4341;4342;4343;4344;4345 2205;2206 2206 2 0 0 0 793200 0 0 1614800 1739000 1511900 0 0 0 0 0 0 SIGKNVSPIEVK EKANPGREGVGLNMRSIGKNVSPIEVKFTG NMRSIGKNVSPIEVKFTGKQSYDL______ R S I V K F 0 0 1 0 0 0 1 1 0 2 0 2 0 0 1 2 0 0 0 2 0 0 12 1 1269.7293 Q9S7H1;Q9SA56 Q9S7H1 188 199 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2;3 3.2405E-224 152.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 2 4 2 2 2 2 2 2 5322200000 77488000 77681000 111000000 362380000 242160000 98663000 647230000 530160000 546660000 275040000 451970000 1109400000 375500000 119920000 296900000 355 202;207 366 4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375 2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245 2233 39 77488000 73350000 71638000 177090000 149370000 96939000 104970000 106360000 125530000 139590000 152430000 183210000 137670000 113260000 127470000 SIGKNVSPIEVKFTGK EKANPGREGVGLNMRSIGKNVSPIEVKFTG IGKNVSPIEVKFTGKQSYDL__________ R S I G K Q 0 0 1 0 0 0 1 2 0 2 0 3 0 1 1 2 1 0 0 2 0 0 16 2 1702.9618 Q9S7H1;Q9SA56 Q9S7H1 188 203 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3;4 6.2022E-56 84.566 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 1 1 1 1 1 603030000 20084000 22303000 18178000 42448000 33909000 2208700 162810000 129230000 114370000 5595900 11164000 23631000 5440800 3240800 8410000 356 202;207 367 4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396;4397;4398 2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264 2247 19 20084000 21060000 11732000 20743000 20916000 2170100 26407000 25925000 26263000 2840100 3765100 3902500 1994700 3060800 3610800 SKLQSEAVR ______________________________ ______________________________ M S K V R E 1 1 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 9 1 1016.5615 P59230;Q8VZB9;P59231 P59230 2 10 RPL10AB;RPL10AA;RPL10AC 60S ribosomal protein L10a-2;60S ribosomal protein L10a-1;60S ribosomal protein L10a-3 yes no 2 3.9555E-12 122.78 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 478780000 6623200 8813000 0 16134000 9187800 5673300 129460000 101730000 87397000 9463000 17708000 33797000 27163000 0 25636000 357 128 368 4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411 2265;2266;2267;2268;2269;2270;2271;2272;2273 2273 9 6623200 8321600 0 7884400 5667200 5574200 20996000 20409000 20069000 4802800 5972100 5581400 9958700 0 11006000 SKYKITYQFYR LARKEQCLALGTRLRSKYKITYQFYRVFPN TRLRSKYKITYQFYRVFPNGEVQYLHPKDG R S K Y R V 0 1 0 0 0 1 0 0 0 1 0 2 0 1 0 1 1 0 3 0 0 0 11 2 1495.7823 Q9S7H1;Q9SA56 Q9S7H1 144 154 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 3 0.018278 43.512 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 29328000 4837200 6719400 10672000 0 0 0 7098800 0 0 0 0 0 0 0 0 358 202;207 369 4412;4413;4414;4415 2274 2274 1 4837200 6344700 6888100 0 0 0 1151400 0 0 0 0 0 0 0 0 SLEGLQTNVQR APTIGIAVDHRRKNRSLEGLQTNVQRLKTY RKNRSLEGLQTNVQRLKTYKTKLVIFPRRA R S L Q R L 0 1 1 0 0 2 1 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 11 0 1243.6521 P41127;A8MQA1 P41127 104 114 RPL13B;BBC1 60S ribosomal protein L13-1;60S ribosomal protein L13 yes no 2 3.9096E-05 77.923 By MS/MS By MS/MS By matching By matching 1 1 1 1 17748000 0 0 0 0 0 0 5925000 4810900 4139200 0 0 0 0 0 2872600 359 21 370 4416;4417;4418;4419 2275 2275 1 0 0 0 0 0 0 960980 965150 950470 0 0 0 0 0 1233300 SLEGLQTNVQRLK APTIGIAVDHRRKNRSLEGLQTNVQRLKTY NRSLEGLQTNVQRLKTYKTKLVIFPRRARK R S L L K T 0 1 1 0 0 2 1 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 13 1 1484.8311 P41127;A8MQA1 P41127 104 116 RPL13B;BBC1 60S ribosomal protein L13-1;60S ribosomal protein L13 yes no 3 0.010054 45.077 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 19601000 0 0 1160400 0 0 0 8229400 5828800 4382800 0 0 0 0 0 0 360 21 371 4420;4421;4422;4423 2276 2276 0 0 0 748950 0 0 0 1334700 1169400 1006400 0 0 0 0 0 0 SLGGAAAAEKKM KRKREEMSSVLRKMRSLGGAAAAEKKM___ KMRSLGGAAAAEKKM_______________ R S L K M - 4 0 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 0 0 0 12 2 1132.591 O80929 O80929 102 113 RPL36A 60S ribosomal protein L36-1 yes yes 2 7.5748E-08 79.474 By MS/MS By matching 1 1 7734200 0 0 0 0 0 0 7422800 0 0 0 0 0 0 311350 0 361 77 372 4424;4425 2277 2277 10 1 0 0 0 0 0 0 1203900 0 0 0 0 0 0 294050 0 SLNPKLPILIR APTRTFVEKNYKDLKSLNPKLPILIRECSG KDLKSLNPKLPILIRECSGVQPQMWARYDM K S L I R E 0 1 1 0 0 0 0 0 0 2 3 1 0 0 2 1 0 0 0 0 0 0 11 1 1262.8074 Q9FIJ2 Q9FIJ2 41 51 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 3 8.8863E-07 67.563 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39013000 0 0 0 2145800 0 1287600 5016200 4236200 4389500 3677100 3314200 9503100 2489100 1021600 1933000 362 181 373 4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437 2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288 2281 11 0 0 0 1048600 0 1265100 813590 849870 1007900 1866200 1117700 1569400 912570 964830 829940 SLSTGNSKSFFVQQNK RKGYWTSLKAFSLGKSLSTGNSKSFFVQQN LSTGNSKSFFVQQNK_______________ K S L N K - 0 0 2 0 0 2 0 1 0 0 1 2 0 2 0 4 1 0 0 1 0 0 16 1 1770.8901 P61847 P61847 37 52 rpl32 50S ribosomal protein L32, chloroplastic yes yes 3 1.8067E-56 100.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 364050000 13783000 14659000 18585000 27843000 12954000 0 78688000 51936000 57424000 11659000 11670000 17415000 21262000 7939800 18236000 363 132 374 4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451 2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300 2289 11 13783000 13841000 11995000 13606000 7990500 0 12762000 10419000 13186000 5917400 3935800 2876000 7795200 7498700 7829600 SLVANEEFQHILR ______________________________ ______________________________ M S L L R V 1 1 1 0 0 1 2 0 1 1 2 0 0 1 0 1 0 0 0 1 0 0 13 0 1554.8154 P34788 P34788 2 14 RPS18A 40S ribosomal protein S18 yes yes 2 4.5751E-33 121.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 67678000 1625100 2648600 5140900 2551900 1757000 0 26086000 15650000 9970200 0 0 0 2248600 0 0 364 95 375 4452;4453;4454;4455;4456;4457;4458;4459;4460 2301;2302;2303;2304;2305;2306;2307 2307 7 1625100 2500900 3318000 1247100 1083700 0 4231000 3139600 2289400 0 0 0 824400 0 0 SMGLAY DFLSVRVYLWHETTRSMGLAY_________ VYLWHETTRSMGLAY_______________ R S M A Y - 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 1 0 0 0 6 0 640.28905 P62090 P62090 76 81 psaC Photosystem I iron-sulfur center yes yes 1 0.018123 86.627 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 390030000 4943900 6186800 11349000 34798000 24900000 8006200 56914000 35555000 31223000 13601000 25342000 74503000 23382000 5662200 33658000 365 133 376 4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475 2308 2308 27 0 4943900 5841800 7324800 17005000 15359000 7866300 9231000 7133100 7169800 6902900 8547000 12304000 8572500 5347700 14451000 SMPIRKDDEVQIVR SSPLSTDLRQKYNVRSMPIRKDDEVQIVRG RSMPIRKDDEVQIVRGTYKGREGKVVQVYR R S M V R G 0 2 0 2 0 1 1 0 0 2 0 1 1 0 1 1 0 0 0 2 0 0 14 2 1684.893 P51414 P51414 46 59 RPL26A 60S ribosomal protein L26-1 yes yes 3;4 3.9696E-20 77.593 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 2 3 3 3 2 3 2 3 2 3 875960000 11652000 21487000 29531000 15849000 6281800 0 235960000 254960000 187450000 7606600 19522000 22898000 23171000 5407800 34179000 366 111 377;378 4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512 2309;2310;2311;2312;2313;2314;2315;2316 2311 21 6 11652000 20289000 19060000 7745100 3874700 0 38271000 51149000 43044000 3860600 6583900 3781400 8495000 5107400 14674000 SNAKEIGFIKYR LIRKYGLNCCRQCFRSNAKEIGFIKYR___ CFRSNAKEIGFIKYR_______________ R S N Y R - 1 1 1 0 0 0 1 1 0 2 0 2 0 1 0 1 0 0 1 0 0 0 12 2 1424.7776 Q680P8 Q680P8 45 56 RPS29A 40S ribosomal protein S29 yes yes 3 1.6358E-11 70.977 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 146410000 11455000 14902000 18878000 0 0 0 40060000 27981000 33135000 0 0 0 0 0 0 367 153 379 4513;4514;4515;4516;4517;4518;4519 2317;2318;2319;2320;2321;2322;2323 2322 7 11455000 14071000 12184000 0 0 0 6497400 5613500 7608700 0 0 0 0 0 0 SNNTVYNATAGGIISK GGNRGRGQIYPDGSKSNNTVYNATAGGIIS NNTVYNATAGGIISKILRKEKGGYEITIVD K S N S K I 2 0 3 0 0 0 0 2 0 2 0 1 0 0 0 2 2 0 1 1 0 0 16 0 1608.8107 P56771 P56771 201 216 petA Cytochrome f yes yes 2 0.014939 72.006 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 32884000 0 0 0 2164100 1431900 0 0 2993600 0 4113400 4810100 7093300 5798100 0 4479500 368 119 380 4520;4521;4522;4523;4524;4525;4526;4527 2324 2324 1 0 0 0 1057600 883210 0 0 600580 0 2087700 1622200 1171400 2125700 0 1923200 SPEPEVKILVDRDPIK ______________________________ PEPEVKILVDRDPIKTSFEEWAKPGHFSRT R S P I K T 0 1 0 2 0 0 2 0 0 2 1 2 0 0 3 1 0 0 0 2 0 0 16 2 1834.02 P56766 P56766 5 20 psaA Photosystem I P700 chlorophyll a apoprotein A1 yes yes 3;4 1.6382E-56 89.231 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 1 1 2 2 120770000 2985000 4468900 5809900 3592100 0 0 14406000 23074000 27071000 0 9611500 2975800 10269000 5668900 10840000 369 118 381 4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542;4543;4544;4545;4546 2325;2326;2327;2328 2325 3 2985000 4219700 3749800 1755400 0 0 2336600 4629100 6216200 0 3241600 491430 3764700 5354000 4654200 SPVAFSWNRF EFGSITWSNPQHEVRSPVAFSWNRF_____ QHEVRSPVAFSWNRF_______________ R S P R F - 1 1 1 0 0 0 0 0 0 0 0 0 0 2 1 2 0 1 0 1 0 0 10 1 1209.5931 Q9ZUF6 Q9ZUF6 745 754 At2g05920 yes yes 2 0.013986 50.878 By matching By MS/MS By matching By MS/MS 1 1 1 1 10089000 0 1109800 0 0 0 0 2664500 1572200 0 0 0 4742500 0 0 0 370 234 382 4547;4548;4549;4550 2329 2329 1 0 1047900 0 0 0 0 432160 315410 0 0 0 783190 0 0 0 SRLPGGFAAQK PPEEEEIVELKKYVKSRLPGGFAAQKIIGT KYVKSRLPGGFAAQKIIGTGRRKCAIARVV K S R Q K I 2 1 0 0 0 1 0 2 0 0 1 1 0 1 1 1 0 0 0 0 0 0 11 1 1130.6196 Q9XJ27 Q9XJ27 72 82 RPS9 30S ribosomal protein S9, chloroplastic yes yes 2;3 2.1832E-42 64.207 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 3 2 1 1 1 1 2 188810000 796750 7037200 439490 20909000 8186800 4513600 6313200 62696000 17789000 12154000 22630000 4002100 21163000 0 179810 371 232 383 4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567;4568;4569;4570;4571 2330;2331;2332;2333;2334;2335;2336;2337;2338;2339 2334 10 796750 6644800 283650 10218000 5049700 4434700 1023900 12578000 4084900 6168500 7632100 660920 7758900 0 77199 SSISISEPGSQTAR SVSFATTRGMFDDTRSSISISEPGSQTART RSSISISEPGSQTARTRVDGKEFFRQVRSR R S S A R T 1 1 0 0 0 1 1 1 0 2 0 0 0 0 1 5 1 0 0 0 0 0 14 0 1418.7001 Q93W28 Q93W28 255 268 Uncharacterized protein At4g15545 yes yes 2 2.0205E-20 59.908 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 372 168 384 4572 2340 2340 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 SSKAGLQFPVGR KGGRGKPKATKSVSRSSKAGLQFPVGRIAR VSRSSKAGLQFPVGRIARFLKAGKYAERVG R S S G R I 1 1 0 0 0 1 0 2 0 0 1 1 0 1 1 2 0 0 0 1 0 0 12 1 1245.683 Q9S9K7;O04848;Q9LD28;O81826;Q9LHQ5;Q9C681 Q9S9K7 26 37 RAT5 Probable histone H2AXb;Probable histone H2AXa;Histone H2A.6;Probable histone H2A.3;Probable histone H2A.2;Probable histone H2A.1 yes no 2;3 0.0046242 57.281 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 1 2 2 348300000 10422000 16252000 17438000 27156000 14522000 10949000 27121000 36388000 33462000 13581000 21222000 73797000 13634000 5608800 26746000 373 66 385 4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600 2341;2342;2343;2344;2345;2346;2347;2348;2349;2350;2351;2352 2352 9 10422000 15346000 11255000 13271000 8957400 10757000 4398800 7300100 7683800 6892700 7157400 12187000 4998400 5297300 11483000 SSKAGLQFPVGRIAR KGGRGKPKATKSVSRSSKAGLQFPVGRIAR SSKAGLQFPVGRIARFLKAGKYAERVGAGA R S S A R F 2 2 0 0 0 1 0 2 0 1 1 1 0 1 1 2 0 0 0 1 0 0 15 2 1585.9053 Q9S9K7;O04848;Q9LD28;O81826;Q9LHQ5;Q9C681 Q9S9K7 26 40 RAT5 Probable histone H2AXb;Probable histone H2AXa;Histone H2A.6;Probable histone H2A.3;Probable histone H2A.2;Probable histone H2A.1 yes no 3;4 4.101E-10 65.179 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 1 2 2 1 1 143960000 9196400 9661400 7584100 0 2764500 1386400 24549000 19697000 18389000 0 5773700 25563000 10428000 1876500 7089500 374 66 386 4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617;4618;4619;4620;4621 2353;2354 2353 2 9196400 9122800 4894900 0 1705200 1362200 3981600 3951600 4222700 0 1947200 4221600 3823000 1772300 3043800 SSTSWNIAPANWK VGQSLSFRVTSSDRRSSTSWNIAPANWKFG RRSSTSWNIAPANWKFGQTFMGKNFRV___ R S S W K F 2 0 2 0 0 0 0 0 0 1 0 1 0 0 1 3 1 2 0 0 0 0 13 0 1460.7048 Q38865 Q38865 233 245 EXPA6 Expansin-A6 yes yes 2 0.029985 39.148 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 29939000 0 1259800 0 0 0 724650 0 0 0 3146400 5171700 14870000 4766400 0 0 375 144 387 4622;4623;4624;4625;4626;4627 2355 2355 1 0 1189600 0 0 0 711980 0 0 0 1596900 1744200 2455700 1747500 0 0 STMGPPQRIF LLKKNWQNVRCLYLKSTMGPPQRIF_____ CLYLKSTMGPPQRIF_______________ K S T I F - 0 1 0 0 0 1 0 1 0 1 0 0 1 1 2 1 1 0 0 0 0 0 10 1 1132.5699 P59230;Q8VZB9 P59230 207 216 RPL10AB;RPL10AA 60S ribosomal protein L10a-2;60S ribosomal protein L10a-1 yes no 2 0.0065091 65.672 By MS/MS By MS/MS By MS/MS 1 1 1 110150000 0 0 0 0 0 0 46655000 34741000 28755000 0 0 0 0 0 0 376 128 388 4628;4629;4630 2356;2357 2356 25 2 0 0 0 0 0 0 7567000 6969700 6602900 0 0 0 0 0 0 STTVGKLLKPLNSEYGK MATQTVEDSSRSGPRSTTVGKLLKPLNSEY TVGKLLKPLNSEYGKVAPGWGTTPLMGVAM R S T G K V 0 0 1 0 0 0 1 2 0 0 3 3 0 0 1 2 2 0 1 1 0 0 17 2 1834.02 P56780 P56780 16 32 psbH Photosystem II reaction center protein H yes yes 3 0.020876 30.956 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 40729000 0 0 0 5465800 4275700 0 0 4989600 4831100 0 6236300 9315300 3105000 0 2510500 377 122 389 4631;4632;4633;4634;4635;4636;4637;4638 2358 2358 1 0 0 0 2671000 2637300 0 0 1001000 1109400 0 2103200 1538300 1138400 0 1077900 SVETYKIYIFK EAGAGGDKKKKMKKKSVETYKIYIFKVLKQ MKKKSVETYKIYIFKVLKQVHPDIGISSKA K S V F K V 0 0 0 0 0 0 1 0 0 2 0 2 0 1 0 1 1 0 2 1 0 0 11 1 1389.7544 Q9LZT0;P40283;O23629 Q9LZT0 54 64 H2B Histone H2B.7;Histone H2B.11;Histone H2B.6 no no 3 0.010514 45.137 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 90584000 0 0 14010000 0 0 0 27353000 13887000 16144000 2598900 3891500 8564500 0 0 4135300 378 70 390 4639;4640;4641;4642;4643;4644;4645;4646 2359;2360;2361 2359 3 0 0 9042200 0 0 0 4436400 2785900 3707000 1319000 1312400 1414400 0 0 1775500 SVLGDVGITEVFSDRADLSGITK LHLPKLSISETYDLKSVLGDVGITEVFSDR TEVFSDRADLSGITKEQPLKVSKALHKAAL K S V T K E 1 1 0 3 0 0 1 3 0 2 2 1 0 1 0 3 2 0 0 3 0 0 23 1 2378.2329 CON__P34955 CON__P34955 323 345 yes yes 3 0.013015 28.505 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 33238000 0 0 0 2440300 3004200 2933100 3530100 2852700 3647100 9165600 4250300 0 0 1415100 0 + 379 33 391 4647;4648;4649;4650;4651;4652;4653;4654;4655 2362 2362 1 0 0 0 1192500 1853000 2881900 572540 572300 837490 4651800 1433400 0 0 1336500 0 TAATISPSFNANVKQNK ______________________________ ATISPSFNANVKQNKPPSFPSESSNRRPKT M T A N K P 3 0 3 0 0 1 0 0 0 1 0 2 0 1 1 2 2 0 0 1 0 0 17 1 1789.9323 A0A1P8BC48;F4K4M0 A0A1P8BC48 2 18 QWRF9 QWRF motif-containing protein 9 yes no 3 0.013289 36.638 By MS/MS By MS/MS 1 1 121070000 0 0 0 0 0 0 83230000 37843000 0 0 0 0 0 0 0 380 16 392 4656;4657 2363;2364 2364 2 0 0 0 0 0 0 13499000 7592000 0 0 0 0 0 0 0 TDKPFGINGSMDLR RPSFKIVASGVKKIKTDKPFGINGSMDLRD KTDKPFGINGSMDLRDGVDASGRKGKGYGV K T D L R D 0 1 1 2 0 0 0 2 0 1 1 1 1 1 1 1 1 0 0 0 0 0 14 1 1549.7559 P27202 P27202 49 62 PSBR Photosystem II 10 kDa polypeptide, chloroplastic yes yes 2;3 6.1678E-21 71.349 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 3 2 3 2 2 2 2 2 2 1092100000 14994000 19087000 41474000 2394800 0 9486100 362320000 28855000 207380000 50234000 63914000 77375000 83756000 42714000 88090000 381 91 393;394 4658;4659;4660;4661;4662;4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686 2365;2366;2367;2368;2369;2370 2368 16 6 14994000 18023000 26768000 1170300 0 9320300 58765000 5788800 47620000 25495000 21556000 12778000 30707000 40342000 37821000 TDPNQNTGIVIQK RPNSGQKNMVTAQGRTDPNQNTGIVIQKCR GRTDPNQNTGIVIQKCRIGATSDLQSVKGS R T D Q K C 0 0 2 1 0 2 0 1 0 2 0 1 0 0 1 0 2 0 0 1 0 0 13 0 1426.7416 O49006 O49006 464 476 PME3 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3 yes yes 2 1.8342E-07 69.423 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 119220000 2171900 2171000 0 11061000 6023000 6878400 7119100 6342200 6372900 6581400 10106000 48313000 0 0 6082700 382 71 395 4687;4688;4689;4690;4691;4692;4693;4694;4695;4696;4697;4698 2371 2371 1 2171900 2050000 0 5405300 3715000 6758200 1154700 1272400 1463400 3340300 3408200 7978500 0 0 2611600 TEIPAATPSDPQLKE EQFYKTLEGLIAESKTEIPAATPSDPQLKE TEIPAATPSDPQLKE_______________ K T E K E - 2 0 0 1 0 1 2 0 0 1 1 1 0 0 3 1 2 0 0 0 0 0 15 1 1595.8043 Q9FLX7 Q9FLX7 155 169 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial yes yes 2 3.4983E-15 103.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1051800000 30801000 30238000 49464000 38855000 41520000 26715000 130670000 138300000 106020000 61860000 80190000 189980000 54140000 25898000 47188000 383 184 396 4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709;4710;4711;4712;4713 2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384 2377 11 30801000 28553000 31925000 18988000 25610000 26249000 21194000 27745000 24345000 31396000 27045000 31373000 19849000 24459000 20260000 TFKVGDYVDVK PFRKKGYIPLSTYLRTFKVGDYVDVKVNGA TYLRTFKVGDYVDVKVNGAIHKGMPHKFYH R T F V K V 0 0 0 2 0 0 0 1 0 0 0 2 0 1 0 0 1 0 1 3 0 0 11 1 1269.6605 Q9FDZ9;Q43291 Q9FDZ9 33 43 RPL21E;RPL21A 60S ribosomal protein L21-2;60S ribosomal protein L21-1 yes no 2;3 0.0023192 63.283 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 47112000 0 0 1743400 0 0 0 19080000 13634000 12654000 0 0 0 0 0 0 384 148 397 4714;4715;4716;4717;4718;4719 2385;2386;2387;2388;2389 2385 5 0 0 1125200 0 0 0 3094600 2735300 2905700 0 0 0 0 0 0 TFQGPPHGIQVER ALRLEDLRIPPAYTKTFQGPPHGIQVERDK TKTFQGPPHGIQVERDKLNKYGRPLLGCTI K T F E R D 0 1 0 0 0 2 1 2 1 1 0 0 0 1 2 0 1 0 0 1 0 0 13 0 1464.7474 O03042 O03042 147 159 rbcL Ribulose bisphosphate carboxylase large chain yes yes 2;3 9.1421E-21 93.649 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 2 2 2 2 2 2 2 2 1375700000 0 29326000 27783000 67380000 55065000 28624000 130450000 145260000 119830000 73005000 119500000 238450000 135720000 58514000 146840000 385 64 398 4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744 2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403;2404 2394 14 0 27691000 17931000 32928000 33965000 28124000 21158000 29143000 27516000 37053000 40301000 39378000 49758000 55264000 63043000 TGDIVEIK AIEVAETVRPVPGLRTGDIVEIKLEVPENK RPVPGLRTGDIVEIKLEVPENKRRLSIYKG R T G I K L 0 0 0 1 0 0 1 1 0 2 0 1 0 0 0 0 1 0 0 1 0 0 8 0 873.48075 Q8RXX5;Q8W463 Q8RXX5 141 148 50S ribosomal protein L19-2, chloroplastic;50S ribosomal protein L19-1, chloroplastic yes no 2 0.011207 92.467 By MS/MS By matching By matching 1 1 1 39860000 0 0 0 0 0 0 36253000 3163000 0 0 0 0 0 443440 0 386 163 399 4745;4746;4747 2405 2405 0 0 0 0 0 0 0 5880000 634550 0 0 0 0 0 418810 0 TGDSSLVAYVKAPNANK SSRCWLGYELKTLTRTGDSSLVAYVKAPNA DSSLVAYVKAPNANKKSTL___________ R T G N K K 3 0 2 1 0 0 0 1 0 0 1 2 0 0 1 2 1 0 1 2 0 0 17 1 1733.8948 Q9ZVA4 Q9ZVA4 421 437 F9K20.10 yes yes 3 0.026517 34.101 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 64633000 0 0 0 6023200 4490500 5095700 5094400 7477700 5885300 0 9705200 16904000 0 0 3957400 387 236 400 4748;4749;4750;4751;4752;4753;4754;4755;4756 2406 2406 0 0 0 0 2943400 2769800 5006700 826260 1500200 1351400 0 3273200 2791500 0 0 1699100 TGDSSLVAYVKAPNANKK SSRCWLGYELKTLTRTGDSSLVAYVKAPNA SSLVAYVKAPNANKKSTL____________ R T G K K S 3 0 2 1 0 0 0 1 0 0 1 3 0 0 1 2 1 0 1 2 0 0 18 2 1861.9898 Q9ZVA4 Q9ZVA4 421 438 F9K20.10 yes yes 3;4 7.554E-05 52.966 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 2 1 1 1 1 2 2 1 1 165180000 5686000 4394700 3672300 17853000 8828900 7830300 10728000 13298000 9591700 4081200 19552000 48063000 5883400 0 5720000 388 236 401 4757;4758;4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775;4776 2407;2408;2409;2410 2407 4 5686000 4149700 2370200 8724700 5445800 7693500 1739900 2667800 2202500 2071400 6594300 7937200 2157000 0 2455800 TGFREGTEAKPR TGRMRYLRNVPRRFKTGFREGTEAKPRSKA RFKTGFREGTEAKPRSKASASSA_______ K T G P R S 1 2 0 0 0 0 2 2 0 0 0 1 0 1 1 0 2 0 0 0 0 0 12 2 1347.6895 Q8LEM8;Q43292 Q8LEM8 76 87 RPL37C;RPL37B 60S ribosomal protein L37-3;60S ribosomal protein L37-2 yes no 3 2.3982E-24 97.456 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 41538000 0 202740 929960 0 0 4771500 15231000 5520600 2807300 3412500 0 8663000 0 0 0 389 149 402 4777;4778;4779;4780;4781;4782;4783;4784 2411 2411 1 0 191440 600210 0 0 4688100 2470300 1107500 644640 1731900 0 1430600 0 0 0 TGKGFTLEELK PVVHGQTLKYNMKVRTGKGFTLEELKAAGI MKVRTGKGFTLEELKAAGIPKKLAPTIGIA R T G L K A 0 0 0 0 0 0 2 2 0 0 2 2 0 1 0 0 2 0 0 0 0 0 11 1 1221.6605 P41127;A8MQA1;F4IWP7 P41127 70 80 RPL13B;BBC1 60S ribosomal protein L13-1;60S ribosomal protein L13 yes no 3 2.1154E-05 60.518 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 23255000 1498400 2979800 12510000 0 0 0 4230700 2035800 0 0 0 0 0 0 0 390 21 403 4785;4786;4787;4788;4789 2412 2412 1 1498400 2813700 8074400 0 0 0 686180 408430 0 0 0 0 0 0 0 TGLFVGLNKGHVVTR ______________________________ TGLFVGLNKGHVVTRRELAPRPNSRKGKTS K T G T R R 0 1 1 0 0 0 0 3 1 0 2 1 0 1 0 0 2 0 0 3 0 0 15 1 1596.91 O80929;Q9M352 O80929 8 22 RPL36A;RPL36B 60S ribosomal protein L36-1;60S ribosomal protein L36-2 no no 3;4 2.3705E-06 58.21 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 2 2 2 2 2 65469000 1320400 2855000 4329300 5742900 1604300 0 20147000 10083000 9508800 0 0 0 5119800 0 4757200 391 77;198 404 4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807 2413;2414;2415;2416 2414 4 1320400 2695800 2794200 2806400 989560 0 3267700 2022900 2183500 0 0 0 1877000 0 2042500 TGLFVGLNKGHVVTRR ______________________________ GLFVGLNKGHVVTRRELAPRPNSRKGKTSK K T G R R E 0 2 1 0 0 0 0 3 1 0 2 1 0 1 0 0 2 0 0 3 0 0 16 2 1753.0111 O80929;Q9M352 O80929 8 23 RPL36A;RPL36B 60S ribosomal protein L36-1;60S ribosomal protein L36-2 no no 4 0.020747 38.511 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 64544000 3966300 3863700 6285800 3541100 0 0 23077000 12592000 11218000 0 0 0 0 0 0 392 77;198 405 4808;4809;4810;4811;4812;4813;4814 2417;2418 2417 2 3966300 3648300 4057000 1730500 0 0 3742900 2526200 2575900 0 0 0 0 0 0 TGYHNMYKEYR TTIKNFGIWLRYQSRTGYHNMYKEYRDTTL YQSRTGYHNMYKEYRDTTLNGAVEQMYTEM R T G Y R D 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 3 0 0 0 11 1 1460.6507 P51418;A0A1P8AY36;A8MRF3;Q8L7K0;Q9LUD4 P51418 87 97 RPL18AB;RPL18AA;RPL18AC 60S ribosomal protein L18a-2;60S ribosomal protein L18a-1;60S ribosomal protein L18a-3 no no 2 0.025419 51.346 By MS/MS 1 20125000 0 0 0 0 0 0 20125000 0 0 0 0 0 0 0 0 393 112;192 406 4815 2419 2419 22 0 0 0 0 0 0 0 3264100 0 0 0 0 0 0 0 0 TIALGK ______________________________ ______________________________ M T I G K F 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 6 0 601.37991 P56761 P56761 2 7 psbD Photosystem II D2 protein yes yes 1 0.00042509 106.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 702500000 2727900 4104600 3140100 45816000 21847000 19586000 0 30012000 29600000 64647000 81131000 151490000 133170000 34305000 80927000 394 117 407 4816;4817;4818;4819;4820;4821;4822;4823;4824;4825;4826;4827;4828;4829 2420;2421;2422 2422 0 2727900 3875800 2026700 22390000 13476000 19244000 0 6021000 6796900 32810000 27362000 25018000 48823000 32399000 34745000 TIALGKFTK ______________________________ ______________________________ M T I T K D 1 0 0 0 0 0 0 1 0 1 1 2 0 1 0 0 2 0 0 0 0 0 9 1 977.59097 P56761 P56761 2 10 psbD Photosystem II D2 protein yes yes 2 3.1686E-05 88.942 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 133990000 0 2775200 2936200 7963400 3597400 1880600 10210000 7756900 6877100 8639500 16581000 31590000 12929000 6837000 13413000 395 117 408 4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843 2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433;2434 2428 11 0 2620500 1895000 3891600 2218900 1847800 1656000 1556200 1579200 4384800 5592100 5216900 4739900 6457200 5758700 TIALGKFTKDEK ______________________________ ______________________________ M T I E K D 1 0 0 1 0 0 1 1 0 1 1 3 0 1 0 0 2 0 0 0 0 0 12 2 1349.7555 P56761 P56761 2 13 psbD Photosystem II D2 protein yes yes 2;3 1.6611E-26 109.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 2 2 2 2 2 1 2 1320700000 3756900 4325000 0 5345200 23705000 2263500 55575000 86920000 75131000 126110000 179110000 298120000 249400000 36865000 174030000 396 117 409 4844;4845;4846;4847;4848;4849;4850;4851;4852;4853;4854;4855;4856;4857;4858;4859;4860;4861;4862;4863;4864;4865;4866 2435;2436;2437;2438;2439;2440;2441;2442;2443;2444;2445;2446;2447;2448;2449;2450;2451;2452;2453 2442 19 3756900 4083900 0 2612100 14621000 2223900 9013800 17438000 17252000 64006000 60405000 49232000 91435000 34817000 74720000 TIATSATHYNGVR YKINATGVVAPVGFKTIATSATHYNGVREY FKTIATSATHYNGVREYDAHSIYGFSETIA K T I V R E 2 1 1 0 0 0 0 1 1 1 0 0 0 0 0 1 3 0 1 1 0 0 13 0 1389.7001 Q9S7Y7 Q9S7Y7 502 514 XYL1 Alpha-xylosidase 1 yes yes 3 0.015279 53.237 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 107490000 1311300 2065600 2300700 0 14215000 4517200 0 19664000 0 11622000 22647000 11203000 0 0 17941000 397 204 410 4867;4868;4869;4870;4871;4872;4873;4874;4875;4876 2454 2454 1 1311300 1950500 1484900 0 8768200 4438300 0 3944900 0 5898300 7638100 1850100 0 0 7702800 TIDRTYPIFTVR ______________________________ ______________________________ M T I V R W 0 2 0 1 0 0 0 0 0 2 0 0 0 1 1 0 3 0 1 1 0 0 12 1 1480.8038 P62095 P62095 2 13 psbF Cytochrome b559 subunit beta yes yes 2;3 0 152.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 11 5 10 10 13 9 11 6 9 6 9 6 8 6 9623200000 69461000 11802000 34720000 11280000 383970000 160300000 769400000 820070000 988730000 772550000 1615800000 2172900000 1189100000 595330000 27784000 398 134 411 4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900;4901;4902;4903;4904;4905;4906;4907;4908;4909;4910;4911;4912;4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936;4937;4938;4939;4940;4941;4942;4943;4944;4945;4946;4947;4948;4949;4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960;4961;4962;4963;4964;4965;4966;4967;4968;4969;4970;4971;4972;4973;4974;4975;4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001 2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528;2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540;2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577;2578;2579;2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598 2557 141 69461000 11144000 22409000 5512500 236840000 157490000 124790000 164520000 227040000 392090000 544940000 358840000 435950000 562260000 11929000 TIFHLNPSGR HVIKPVIPEKYLDEKTIFHLNPSGRFVIGG YLDEKTIFHLNPSGRFVIGGPHGDAGLTGR K T I G R F 0 1 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 10 0 1140.604 Q9LUT2;P23686;P17562 Q9LUT2 228 237 METK4;SAM1;SAM2 S-adenosylmethionine synthase 4;S-adenosylmethionine synthase 1;S-adenosylmethionine synthase 2 yes no 3 0.013027 46.462 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 60870000 804110 0 0 5378600 1385900 0 11947000 9526000 7839600 3854700 0 6923300 4821200 1903900 6485800 399 85 412 5002;5003;5004;5005;5006;5007;5008;5009;5010;5011;5012 2599 2599 0 804110 0 0 2628400 854810 0 1937700 1911100 1800200 1956400 0 1143300 1767600 1798100 2784600 TIFHLNPSGRFVIGGPHGDAGLTGRK HVIKPVIPEKYLDEKTIFHLNPSGRFVIGG VIGGPHGDAGLTGRKIIIDTYGGWGAHGGG K T I R K I 1 2 1 1 0 0 0 6 2 2 2 1 0 2 2 1 2 0 0 1 0 0 26 2 2703.4358 Q9LUT2;P23686;P17562 Q9LUT2 228 253 METK4;SAM1;SAM2 S-adenosylmethionine synthase 4;S-adenosylmethionine synthase 1;S-adenosylmethionine synthase 2 yes no 6 0.007252 18.095 By matching By matching By MS/MS By MS/MS 1 1 1 1 25896000 0 0 2584500 0 0 0 10912000 5736400 6663600 0 0 0 0 0 0 400 85 413 5013;5014;5015;5016 2600 2600 1 0 0 1668100 0 0 0 1769800 1150800 1530100 0 0 0 0 0 0 TIITGSRNVVDGSTTFHSATVAAVGER KKKKNIMFMGDGRTRTIITGSRNVVDGSTT STTFHSATVAAVGERFLARDITFQNTAGPS R T I E R F 3 2 1 1 0 0 1 3 1 2 0 0 0 1 0 3 5 0 0 4 0 0 27 1 2745.4046 O49006;Q42534 O49006 342 368 PME3;PME2 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3;Pectinesterase 2 yes no 3;4 9.2251E-127 114.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 889610000 18093000 21020000 22183000 70160000 37528000 20107000 168790000 117640000 75166000 30911000 58667000 146890000 31147000 20304000 51004000 401 71 414 5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035;5036;5037;5038;5039;5040;5041;5042;5043;5044;5045;5046 2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630 2612 30 18093000 19848000 14317000 34286000 23148000 19756000 27376000 23601000 17260000 15688000 19786000 24257000 11419000 19176000 21898000 TIVFGSSAGQINGKQR NPQGSYHYGLIPLIRTIVFGSSAGQINGKQ IVFGSSAGQINGKQRYGVNSVSFVPADTPL R T I Q R Y 1 1 1 0 0 2 0 3 0 2 0 1 0 1 0 2 1 0 0 1 0 0 16 1 1661.8849 F4I7X1 F4I7X1 350 365 SKS6 yes yes 3 4.8048E-56 113.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 98929000 2340100 1848500 0 7722500 3364800 5571800 0 4429500 5462100 8482200 9747500 37781000 6415300 0 5764000 402 40 415 5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058 2631;2632;2633;2634;2635 2633 5 2340100 1745400 0 3773900 2075400 5474400 0 888640 1254300 4305000 3287400 6239200 2352000 0 2474700 TLGGILLPSTAQSKPQGGEVVAVGEGR LGDRVLVKIKEAEEKTLGGILLPSTAQSKP SKPQGGEVVAVGEGRTIGKNKIDITVPTGA K T L G R T 2 1 0 0 0 2 2 6 0 1 3 1 0 0 2 2 2 0 0 3 0 0 27 1 2620.4184 O65282 O65282 80 106 CPN21 20 kDa chaperonin, chloroplastic yes yes 3 0.0063643 11.311 By MS/MS By MS/MS By matching 1 1 1 7231800 1994400 0 3784100 1453300 0 0 0 0 0 0 0 0 0 0 0 403 74 416 5059;5060;5061 2636 2636 1 1994400 0 2442300 710190 0 0 0 0 0 0 0 0 0 0 0 TNTDFLPYNGDGFK DAAYGEAANVFGKPKTNTDFLPYNGDGFKV KTNTDFLPYNGDGFKVQVPAKWNPSKEIEY K T N F K V 0 0 2 2 0 0 0 2 0 0 1 1 0 2 1 0 2 0 1 0 0 0 14 0 1587.7205 Q42029 Q42029 91 104 PSBP1 Oxygen-evolving enhancer protein 2-1, chloroplastic yes yes 2 0.024875 48.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 26931000 3648500 3861400 4330900 0 0 0 5358100 3328900 6403100 0 0 0 0 0 0 404 146 417 5062;5063;5064;5065;5066;5067 2637 2637 1 3648500 3646100 2795200 0 0 0 869040 667840 1470300 0 0 0 0 0 0 TPGPGAQSALR AMHVKLRATGGNKTKTPGPGAQSALRALAR NKTKTPGPGAQSALRALARSGMKIGRIEDV K T P L R A 2 1 0 0 0 1 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1053.5567 P42036;Q9CAX6;Q9SIH0 Q9CAX6 106 116 RPS14C;RPS14B;RPS14A 40S ribosomal protein S14-3;40S ribosomal protein S14-2;40S ribosomal protein S14-1 no no 2 0.014937 60.436 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 26035000 0 0 1327400 0 0 0 5426800 7671900 0 0 7985500 0 3623800 0 0 405 98;176;213 418 5068;5069;5070;5071;5072;5073 2638;2639 2638 2 0 0 856750 0 0 0 880180 1539100 0 0 2693200 0 1328600 0 0 TPTVFDNK PLNGNRSALVDFDLRTPTVFDNKYYVNLKE LVDFDLRTPTVFDNKYYVNLKERKGLIQSD R T P N K Y 0 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 2 0 0 1 0 0 8 0 920.46035 Q9SMU8;Q9LHB9 Q9SMU8 255 262 PER34;PER32 Peroxidase 34;Peroxidase 32 yes no 2 0.021082 86.086 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 116290000 1269100 0 1053200 4270300 0 0 16779000 22534000 14485000 6724800 9317600 21094000 9765600 2306500 6695800 406 218 419 5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085 2640 2640 1 1269100 0 679780 2086800 0 0 2721300 4520700 3326100 3413100 3142500 3483500 3580300 2178400 2874800 TPTVFDNKYYVNLKER PLNGNRSALVDFDLRTPTVFDNKYYVNLKE PTVFDNKYYVNLKERKGLIQSDQELFSSPN R T P E R K 0 1 2 1 0 0 1 0 0 0 1 2 0 1 1 0 2 0 2 2 0 0 16 2 1986.0211 Q9SMU8 Q9SMU8 255 270 PER34 Peroxidase 34 yes yes 3;4 7.7067E-39 88.075 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 81064000 9223300 6511100 15805000 0 0 0 22321000 13769000 13435000 0 0 0 0 0 0 407 218 420 5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096 2641;2642;2643;2644;2645;2646;2647 2645 7 9223300 6148100 10201000 0 0 0 3620300 2762300 3085000 0 0 0 0 0 0 TRTIITGSRNVVDGSTTFHSATVAAVGER VAKKKKNIMFMGDGRTRTIITGSRNVVDGS STTFHSATVAAVGERFLARDITFQNTAGPS R T R E R F 3 3 1 1 0 0 1 3 1 2 0 0 0 1 0 3 6 0 0 4 0 0 29 2 3002.5534 O49006 O49006 340 368 PME3 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3 yes yes 4;5 2.9686E-54 61.801 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 2 2 2 1 2 103770000 1698400 5622200 7227300 5380100 7462700 0 31231000 24979000 6489900 0 0 13681000 0 0 0 408 71 421 5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111 2648;2649;2650;2651;2652 2649 5 1698400 5308700 4664600 2629100 4603100 0 5065400 5011200 1490300 0 0 2259400 0 0 0 TRYPVVVR FKNVGSVVAVDQDPKTRYPVVVRFAKVNYA AVDQDPKTRYPVVVRFAKVNYANISTNNYA K T R V R F 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 3 0 0 8 1 988.5818 Q9S714;Q9S831 Q9S831 112 119 PSAE2;PSAE1 Photosystem I reaction center subunit IV B, chloroplastic;Photosystem I reaction center subunit IV A, chloroplastic no no 2 6.4498E-22 119.7 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 976960000 19417000 18200000 0 56275000 0 0 266290000 144460000 138090000 22787000 49514000 215410000 46516000 0 0 409 205;201 422 5112;5113;5114;5115;5116;5117;5118;5119;5120;5121 2653;2654;2655;2656 2656 2 19417000 17185000 0 27501000 0 0 43190000 28981000 31709000 11565000 16699000 35574000 17054000 0 0 TRYPVVVRFAK FKNVGSVVAVDQDPKTRYPVVVRFAKVNYA QDPKTRYPVVVRFAKVNYANISTNNYALDE K T R A K V 1 2 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 3 0 0 11 2 1334.7823 Q9S714;Q9S831 Q9S831 112 122 PSAE2;PSAE1 Photosystem I reaction center subunit IV B, chloroplastic;Photosystem I reaction center subunit IV A, chloroplastic no no 3 5.477E-05 63.283 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 251560000 11309000 8483500 13367000 10409000 8223800 1640600 59084000 39004000 41586000 0 8999300 12732000 10303000 7270600 19148000 410 205;201 423 5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135 2657;2658;2659;2660;2661 2661 5 11309000 8010500 8627500 5086600 5072500 1611900 9582900 7825000 9549300 0 3035100 2102600 3777300 6866700 8221000 TSAAIKVLKQIGAYDDAEK EMPLVVSDSAEAVEKTSAAIKVLKQIGAYD IKVLKQIGAYDDAEKAKNSIGIRPGKGKMR K T S E K A 4 0 0 2 0 1 1 1 0 2 1 3 0 0 0 1 1 0 1 1 0 0 19 2 2020.0841 F4KDU5;P49691;Q2V3X4;Q9SF40 Q2V3X4 169 187 At5g02870;RPL4D;At3g09630;RPL4A 60S ribosomal protein L4-2;60S ribosomal protein L4-1 no no 3 0.00030127 48.623 By MS/MS By MS/MS By MS/MS 1 1 1 30407000 0 0 0 0 0 0 14184000 8897400 7325600 0 0 0 0 0 0 411 141;63 424 5136;5137;5138 2662 2662 1 0 0 0 0 0 0 2300500 1785000 1682200 0 0 0 0 0 0 TTEEKEILAAK ______________________________ ______________________________ M T T A K L 2 0 0 0 0 0 3 0 0 1 1 2 0 0 0 0 2 0 0 0 0 0 11 1 1231.666 Q9LHG9 Q9LHG9 2 12 Nascent polypeptide-associated complex subunit alpha-like protein 1 yes yes 2 6.5361E-42 102.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 117240000 0 0 0 9720700 8975500 4540800 29335000 23002000 0 0 10922000 30747000 0 0 0 412 188 425 5139;5140;5141;5142;5143;5144;5145;5146;5147;5148 2663;2664;2665;2666;2667;2668;2669;2670;2671;2672 2672 10 0 0 0 4750300 5536200 4461500 4757900 4614600 0 0 3683600 5077700 0 0 0 TTPQVKTGLFVGLNKGHVVTR ______________________________ TGLFVGLNKGHVVTRRELAPRPRSRKGKTS M T T T R R 0 1 1 0 0 1 0 3 1 0 2 2 0 1 1 0 4 0 0 4 0 0 21 2 2251.2801 Q9M352 Q9M352 2 22 RPL36B 60S ribosomal protein L36-2 yes yes 4 2.2281E-15 61.102 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 29366000 2249300 0 0 3683600 1645200 0 15370000 0 6417600 0 0 0 0 0 0 413 198 426 5149;5150;5151;5152;5153 2673 2673 1 2249300 0 0 1800100 1014700 0 2492900 0 1473700 0 0 0 0 0 0 TVNRAYGGVLSGSAVR RPTEYKRSRLSRNRRTVNRAYGGVLSGSAV VNRAYGGVLSGSAVRERIIRAFLVEEQKIV R T V V R E 2 2 1 0 0 0 0 3 0 0 1 0 0 0 0 2 1 0 1 3 0 0 16 1 1605.8587 Q9FE65 Q9FE65 73 88 RPL34B 60S ribosomal protein L34-2 no no 3 2.3489E-20 71.279 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 106440000 0 3425000 0 12743000 4960200 2655400 25609000 20684000 14193000 2240600 0 10073000 3892300 0 5961700 414 178 427 5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164 2674;2675 2674 2 0 3234000 0 6227300 3059500 2609000 4153500 4149600 3259200 1137200 0 1663500 1427000 0 2559600 TVNRAYGGVLSGSAVRER RPTEYKRSRLSRNRRTVNRAYGGVLSGSAV RAYGGVLSGSAVRERIIRAFLVEEQKIVKK R T V E R I 2 3 1 0 0 0 1 3 0 0 1 0 0 0 0 2 1 0 1 3 0 0 18 2 1891.0024 Q9FE65 Q9FE65 73 90 RPL34B 60S ribosomal protein L34-2 no no 4 1.0162E-24 65.943 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 63576000 2047300 2550000 3384400 3525300 1373600 0 21671000 16062000 12963000 0 0 0 0 0 0 415 178 428 5165;5166;5167;5168;5169;5170;5171;5172 2676;2677;2678;2679 2678 4 2047300 2407800 2184400 1722700 847240 0 3514800 3222400 2976600 0 0 0 0 0 0 TVTSVGGAGTYSVK FAVNVDGVGAYKYTRTVTSVGGAGTYSVKV RTVTSVGGAGTYSVKVTSETTGVKISVEPA R T V V K V 1 0 0 0 0 0 0 3 0 0 0 1 0 0 0 2 3 0 1 3 0 0 14 0 1325.6827 O65351 O65351 678 691 SBT1.7 Subtilisin-like protease SBT1.7 yes yes 2 4.6582E-20 78.098 By MS/MS By matching By MS/MS 1 1 1 15556000 0 0 0 0 0 3798700 0 0 0 1941900 0 9815000 0 0 0 416 75 429 5173;5174;5175 2680 2680 1 0 0 0 0 0 3732300 0 0 0 985580 0 1620900 0 0 0 TVVAAVPVDKLPLESK SGVDGAEPESKEEPKTVVAAVPVDKLPLES VVAAVPVDKLPLESKEAKEKLLLELRLKMK K T V S K E 2 0 0 1 0 0 1 0 0 0 2 2 0 0 2 1 1 0 0 4 0 0 16 1 1664.9713 Q9LER7 Q9LER7 83 98 PSRP5 50S ribosomal protein 5, chloroplastic yes yes 2;3 5.7487E-22 78.814 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 1 2 2 2 2 2 1 362070000 5898700 9558400 10458000 33392000 15175000 9060100 34680000 24954000 16861000 31682000 42070000 83837000 20347000 11171000 12924000 417 187 430 5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198;5199;5200;5201 2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691 2681 7 5898700 9025500 6749500 16318000 9360300 8901800 5624700 5006200 3871700 16080000 14188000 13845000 7459500 10551000 5548700 TVVAAVPVDKLPLESKEAK SGVDGAEPESKEEPKTVVAAVPVDKLPLES AVPVDKLPLESKEAKEKLLLELRLKMKLAK K T V A K E 3 0 0 1 0 0 2 0 0 0 2 3 0 0 2 1 1 0 0 4 0 0 19 2 1993.1459 Q9LER7 Q9LER7 83 101 PSRP5 50S ribosomal protein 5, chloroplastic yes yes 3;4 4.306E-29 75.018 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 2 2 1 2 2 2 1 180320000 5084800 5693100 3207900 20322000 12048000 2796200 34681000 17762000 12390000 12058000 17069000 32547000 0 0 4665600 418 187 431 5202;5203;5204;5205;5206;5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223 2692;2693;2694;2695;2696;2697;2698;2699 2696 7 5084800 5375700 2070400 9930900 7431200 2747300 5624900 3563400 2845000 6119600 5756700 5374900 0 0 2003100 TYKAKLVVFPR NRSLEGLQSNVQRLKTYKAKLVVFPRRSRQ QRLKTYKAKLVVFPRRSRQVKAGDSTPEEL K T Y P R R 1 1 0 0 0 0 0 0 0 0 1 2 0 1 1 0 1 0 1 2 0 0 11 2 1320.7918 Q9FF90 Q9FF90 117 127 RPL13D 60S ribosomal protein L13-3 yes yes 3 3.0052E-06 59.35 By matching By MS/MS By matching By matching 1 1 1 1 8647300 0 1430800 3985700 0 0 0 2565900 0 0 0 0 0 0 0 664990 419 179 432 5224;5225;5226;5227 2700 2700 1 0 1351000 2572400 0 0 0 416170 0 0 0 0 0 0 0 285510 TYKTKLVIFPR NRSLEGLQTNVQRLKTYKTKLVIFPRRARK QRLKTYKTKLVIFPRRARKVKAGDSTPEEL K T Y P R R 0 1 0 0 0 0 0 0 0 1 1 2 0 1 1 0 2 0 1 1 0 0 11 2 1364.818 P41127;A8MQA1 P41127 117 127 RPL13B;BBC1 60S ribosomal protein L13-1;60S ribosomal protein L13 yes no 3 6.0229E-10 56.563 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 103240000 8634400 11631000 35840000 1707200 0 0 22257000 12893000 10278000 0 0 0 0 0 0 420 21 433 5228;5229;5230;5231;5232;5233;5234 2701;2702;2703;2704;2705;2706 2701 6 8634400 10983000 23132000 834290 0 0 3609900 2586600 2360200 0 0 0 0 0 0 VAGLGKILGPR MEFDKLIASPDMMVKVAGLGKILGPRGLMP MMVKVAGLGKILGPRGLMPNPKAGTVTANI K V A P R G 1 1 0 0 0 0 0 3 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1079.6815 F4J296;Q9LY66 F4J296 232 242 At3g63490;RPL1 Ribosomal protein;50S ribosomal protein L1, chloroplastic yes no 3 0.0086348 47.603 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 22475000 0 0 0 2313200 0 1593200 3139700 0 2278300 3229200 3516600 6404500 0 0 0 421 51 434 5235;5236;5237;5238;5239;5240;5241 2707 2707 1 0 0 0 1130400 0 1565300 509230 0 523170 1638900 1186000 1057600 0 0 0 VAGPPVVMNPISR EWGAATEERLQAWPRVAGPPVVMNPISRQN PRVAGPPVVMNPISRQNFIVKSRPE_____ R V A S R Q 1 1 1 0 0 0 0 1 0 1 0 0 1 0 3 1 0 0 0 3 0 0 13 0 1335.7333 Q38842 Q38842 58 70 ATOZI1 yes yes 2 1.0075E-13 74.92 By MS/MS 1 6889200 0 0 0 0 0 0 0 0 0 0 0 6889200 0 0 0 422 143 435 5242 2708 2708 29 0 0 0 0 0 0 0 0 0 0 0 0 1137700 0 0 0 VAINGFGR TTSTPVRGETVAKLKVAINGFGRIGRNFLR ETVAKLKVAINGFGRIGRNFLRCWHGRKDS K V A G R I 1 1 1 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 1 0 0 8 0 832.45554 P25857 P25857 84 91 GAPB Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic no no 2 0.016174 78.002 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 189050000 17097000 20570000 17745000 0 0 0 50837000 38966000 43834000 0 0 0 0 0 0 423 90 436 5243;5244;5245;5246;5247;5248 2709;2710;2711 2710 3 17097000 19423000 11453000 0 0 0 8245300 7817300 10065000 0 0 0 0 0 0 VAKVTGGAPNKLSK STQLKELKAELASLRVAKVTGGAPNKLSKI RVAKVTGGAPNKLSKIKVVRKSIAQVLTVS R V A S K I 2 0 1 0 0 0 0 2 0 0 1 3 0 0 1 1 1 0 0 2 0 0 14 2 1368.8089 A0A1I9LSB4;F4KDR2;Q9SF53;Q9M3D2;Q9LZ41;O80626 A0A1I9LSB4 33 46 At5g02610;RPL35A;RPL35C;RPL35D;RPL35B 60S ribosomal protein L35-1;60S ribosomal protein L35-3;60S ribosomal protein L35-4;60S ribosomal protein L35-2 yes no 2;3 1.0285E-30 98.407 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 1 2 1 1 2 1 1 1 1 1 254770000 2500800 436460 4179800 14230000 0 4309800 61679000 38343000 38240000 17962000 16486000 28989000 11334000 1411200 14671000 424 3 437 5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265 2712;2713;2714;2715 2714 2 2500800 412130 2697700 6953700 0 4234500 10004000 7692300 8781000 9116600 5560100 4787300 4155200 1332800 6298700 VALVYGQMNEPPGAR KESGVINEQNLAESKVALVYGQMNEPPGAR VALVYGQMNEPPGARMRVGLTALTMAEYFR K V A A R M 2 1 1 0 0 1 1 2 0 0 1 0 1 0 2 0 0 0 1 2 0 0 15 0 1600.8032 P19366 P19366 232 246 atpB ATP synthase subunit beta, chloroplastic yes yes 2 2.2892E-36 96.331 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 1 1 2 2 1 1 174620000 2329800 5097800 4330200 0 5655500 4534600 17934000 17206000 19996000 6901900 8261400 39191000 20229000 6267400 16682000 425 86 438;439 5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281;5282;5283 2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727 2717 14 12 2329800 4813600 2794800 0 3488400 4455300 2908700 3451800 4591800 3502900 2786200 6472100 7416600 5919200 7162500 VATGLFVGLNK ______________________________ ______________________________ M V A N K G 1 0 1 0 0 0 0 2 0 0 2 1 0 1 0 0 1 0 0 2 0 0 11 0 1117.6495 Q9LZ57 Q9LZ57 2 12 RPL36C 60S ribosomal protein L36-3 yes yes 2 5.3711E-15 107.66 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 114500000 0 0 0 3604400 3449200 4085000 2431200 7107100 6141600 11906000 11372000 17368000 20931000 13021000 13083000 426 195 440 5284;5285;5286;5287;5288;5289;5290;5291;5292;5293;5294;5295 2728;2729;2730;2731;2732;2733;2734;2735;2736 2732 4 0 0 0 1761400 2127500 4013600 394310 1425800 1410300 6042800 3835400 2868200 7673900 12298000 5617200 VATGLFVGLNKGHVVTKR ______________________________ GLFVGLNKGHVVTKREQPPRPNNRKGKTSK M V A K R E 1 1 1 0 0 0 0 3 1 0 2 2 0 1 0 0 2 0 0 4 0 0 18 2 1895.1105 Q9LZ57 Q9LZ57 2 19 RPL36C 60S ribosomal protein L36-3 yes yes 3;4;5 1.5099E-72 120.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 1 1 3 3 5 3 3 3 3 3 3 596600000 22880000 30344000 48552000 28658000 5089100 3341300 130270000 84446000 117480000 16580000 25289000 29849000 21683000 12132000 20006000 427 195 441 5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307;5308;5309;5310;5311;5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335;5336;5337;5338 2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765 2764 29 22880000 28652000 31336000 14005000 3139000 3282900 21128000 16941000 26978000 8414800 8528800 4929300 7949500 11458000 8589600 VATVSLPR IMLIKLSSPATLNSRVATVSLPRSCAAAGT PATLNSRVATVSLPRSCAAAGTECLISGWG R V A P R S 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 8 0 841.50215 CON__P00761 CON__P00761 108 115 yes yes 2 6.2155E-06 94.669 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1041900000 109200000 102840000 172490000 83488000 39588000 6508400 199320000 140310000 97140000 6890300 6111700 32743000 9325000 6170000 29810000 + 428 32 442 5339;5340;5341;5342;5343;5344;5345;5346;5347;5348;5349;5350;5351;5352;5353 2766;2767;2768;2769;2770;2771 2766 6 109200000 97107000 111330000 40799000 24418000 6394600 32328000 28150000 22306000 3497100 2061200 5407300 3418700 5827300 12799000 VDVVTLGPSVR ______________________________ KEPKVDVVTLGPSVREGEQVFGVVHIFASF K V D V R E 0 1 0 1 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 4 0 0 11 0 1140.6503 Q9SIH0 Q9SIH0 11 21 RPS14A 40S ribosomal protein S14-1 yes yes 2 0.00028593 60.436 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 26173000 0 0 0 2996300 2714400 0 0 7349900 8078500 0 0 5034100 0 0 0 429 213 443 5354;5355;5356;5357;5358;5359 2772;2773;2774 2772 3 0 0 0 1464200 1674300 0 0 1474500 1855100 0 0 831340 0 0 0 VEKSGGEVNFPK ______________________________ ______________________________ M V E P K L 0 0 1 0 0 0 2 2 0 0 0 2 0 1 1 1 0 0 0 2 0 0 12 1 1289.6616 Q9M1X3 Q9M1X3 2 13 F16M2_10 yes yes 2;3 2.1609E-25 113.71 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 1 2 1 2 1 1 1 2 282010000 14043000 27166000 34370000 19326000 2482400 0 53386000 49549000 43967000 4225000 6208000 22813000 0 0 4472500 430 196 444 5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373;5374;5375;5376;5377 2775;2776;2777;2778 2777 4 14043000 25652000 22183000 9444200 1531200 0 8658700 9940500 10096000 2144300 2093700 3767400 0 0 1920200 VENVTLGPAVR ______________________________ KEPKVENVTLGPAVREGEQVFGVVHVFASF K V E V R E 1 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 0 3 0 0 11 0 1153.6455 P42036 P42036 11 21 RPS14C 40S ribosomal protein S14-3 yes yes 2 2.4429E-08 65.252 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 431 98 445 5378;5379;5380;5381 2779;2780;2781;2782 2780 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 VETVTLGPSVR ______________________________ KEPKVETVTLGPSVREGEQVFGVVHIFASF K V E V R E 0 1 0 0 0 0 1 1 0 0 1 0 0 0 1 1 2 0 0 3 0 0 11 0 1156.6452 Q9CAX6 Q9CAX6 11 21 RPS14B 40S ribosomal protein S14-2 yes yes 2 5.1098E-54 133.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 275450000 5395200 7077400 7271300 21956000 16204000 11046000 56039000 49942000 40166000 6835600 10616000 19770000 7717800 3609300 11810000 432 176 446 5382;5383;5384;5385;5386;5387;5388;5389;5390;5391;5392;5393;5394;5395;5396 2783;2784;2785;2786;2787;2788;2789;2790;2791;2792;2793;2794;2795;2796;2797 2797 15 5395200 6682800 4693000 10729000 9994600 10853000 9089000 10019000 9223200 3469300 3580300 3264800 2829500 3408800 5070500 VEVKAPGILER PIDGKGALSDHEQRRVEVKAPGILERKSVH EQRRVEVKAPGILERKSVHEPMQTGLKAVD R V E E R K 1 1 0 0 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 2 0 0 11 1 1209.7081 F4IMB5;A0A2P2CLF9;P92549 F4IMB5 401 411 At2g07698;ATPA ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 3 9.5248E-10 78.655 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 75792000 1656500 2564900 2639700 4470700 5417700 3273900 12205000 8140800 7219400 3063600 0 16193000 3398100 1204500 4344600 433 20 447 5397;5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408;5409;5410 2798;2799;2800;2801;2802;2803;2804;2805 2801 8 1656500 2421900 1703700 2184700 3341700 3216700 1979500 1633200 1657800 1554900 0 2674200 1245800 1137600 1865300 VFPNGEVQYLHPK TRLRSKYKITYQFYRVFPNGEVQYLHPKDG YRVFPNGEVQYLHPKDGVYPEKANPGREGV R V F P K D 0 0 1 0 0 1 1 1 1 0 1 1 0 1 2 0 0 0 1 2 0 0 13 0 1526.7882 Q9S7H1;Q9SA56 Q9S7H1 155 167 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 2;3 9.2528E-33 86.794 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 3 2 1 2 2 1 1 1 540950000 27315000 26741000 35113000 51668000 22861000 9498500 96630000 67116000 74454000 12738000 26988000 53310000 14060000 5539700 16914000 434 202;207 448 5411;5412;5413;5414;5415;5416;5417;5418;5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431;5432;5433;5434;5435 2806;2807;2808;2809;2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835 2806 30 27315000 25251000 22662000 25249000 14101000 9332500 15672000 13465000 17097000 6465000 9101900 8803700 5154700 5232000 7262000 VFPNGEVQYLHPKDGVYPEK TRLRSKYKITYQFYRVFPNGEVQYLHPKDG EVQYLHPKDGVYPEKANPGREGVGLNMRSI R V F E K A 0 0 1 1 0 1 2 2 1 0 1 2 0 1 3 0 0 0 2 3 0 0 20 1 2315.1586 Q9S7H1;Q9SA56 Q9S7H1 155 174 psaD1;PSAD2 Photosystem I reaction center subunit II-1, chloroplastic;Photosystem I reaction center subunit II-2, chloroplastic no no 4 0.012685 31.801 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 60641000 2640800 1664200 2793100 2910400 6547500 2110100 10417000 5815700 9400800 0 5578600 10763000 0 0 0 435 202;207 449 5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446 2836 2836 1 2640800 1571500 1802700 1422300 4038600 2073200 1689500 1166700 2158700 0 1881400 1777400 0 0 0 VFVVVQDDTFRK ______________________________ PPRVFVVVQDDTFRKQTVRRCEFWFDFRTD R V F R K Q 0 1 0 2 0 1 0 0 0 0 0 1 0 2 0 0 1 0 0 4 0 0 12 1 1451.7773 Q8GWL7 Q8GWL7 13 24 At2g41550 yes yes 3 0.0090564 30.872 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 117600000 0 0 0 9323300 8716100 7035900 0 0 8663500 9952700 14319000 36300000 12039000 2358200 8890600 436 156 450 5447;5448;5449;5450;5451;5452;5453;5454;5455;5456 2837 2837 1 0 0 0 4556100 5376200 6913000 0 0 1989400 5051300 4829200 5994600 4413600 2227200 3817100 VGDYVDVK KKGYIPLSTYLRTFKVGDYVDVKVNGAIHK TYLRTFKVGDYVDVKVNGAIHKGMPHKFYH K V G V K V 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 3 0 0 8 0 893.44945 Q9FDZ9;Q43291 Q9FDZ9 36 43 RPL21E;RPL21A 60S ribosomal protein L21-2;60S ribosomal protein L21-1 yes no 2 8.1529E-06 97.071 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 79651000 915720 1272700 1705400 2623800 0 0 12179000 14637000 10781000 5142100 4279500 7199000 8565600 2129800 8219800 437 148 451 5457;5458;5459;5460;5461;5462;5463;5464;5465;5466;5467;5468;5469 2838 2838 0 915720 1201700 1100700 1282200 0 0 1975300 2936500 2475700 2609800 1443300 1188900 3140300 2011500 3529100 VGETYLDLK SQLATLPILSFEGEKVGETYLDLKAAPEDT SFEGEKVGETYLDLKAAPEDTARAVVHRAI K V G L K A 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 9 0 1036.5441 Q2V4Q4;Q3EDH2;O50061 Q2V4Q4 64 72 RPL4 50S ribosomal protein L4, chloroplastic yes no 2 2.0372E-09 101.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 204980000 15300000 20854000 46621000 5290100 0 0 35709000 20384000 18072000 3310400 4144100 12630000 7840000 4664500 10164000 438 73 452 5470;5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481;5482 2839;2840;2841;2842;2843;2844 2839 4 15300000 19691000 30090000 2585200 0 0 5791700 4089300 4149800 1680200 1397700 2085700 2874300 4405400 4363800 VGETYLDLKAAPEDTAR SQLATLPILSFEGEKVGETYLDLKAAPEDT ETYLDLKAAPEDTARAVVHRAIVTDLNNKR K V G A R A 3 1 0 2 0 0 2 1 0 0 2 1 0 0 1 0 2 0 1 1 0 0 17 1 1847.9265 Q2V4Q4;Q3EDH2;O50061 Q2V4Q4 64 80 RPL4 50S ribosomal protein L4, chloroplastic yes no 3 0.0048347 45.33 By MS/MS By matching 1 1 7701300 0 0 3281600 0 0 0 4419700 0 0 0 0 0 0 0 0 439 73 453 5483;5484 2845 2845 1 0 0 2118000 0 0 0 716840 0 0 0 0 0 0 0 0 VGFFSSGPPAR DVILQQLKDGPTIRRVGFFSSGPPARSHSE TIRRVGFFSSGPPARSHSEVHDESGNKIGE R V G A R S 1 1 0 0 0 0 0 2 0 0 0 0 0 2 2 2 0 0 0 1 0 0 11 0 1120.5665 A0A2H1ZEA9;O65396 A0A2H1ZEA9 341 351 GDCST Aminomethyltransferase, mitochondrial yes no 2 1.1403E-08 75.854 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 36203000 0 1789800 0 4020300 2578900 4730600 0 5674200 0 0 4133400 12546000 0 0 729740 440 19 454 5485;5486;5487;5488;5489;5490;5491;5492 2846;2847;2848;2849;2850 2847 5 0 1690000 0 1964700 1590700 4647900 0 1138300 0 0 1394000 2071900 0 0 313310 VGFFSSGPPARSHSEVHDESGNK DVILQQLKDGPTIRRVGFFSSGPPARSHSE PARSHSEVHDESGNKIGEITSGGFSPNLKK R V G N K I 1 1 1 1 0 0 2 3 2 0 0 1 0 2 2 5 0 0 0 2 0 0 23 1 2427.1203 A0A2H1ZEA9;O65396 A0A2H1ZEA9 341 363 GDCST Aminomethyltransferase, mitochondrial yes no 4 8.3272E-21 63.578 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 75104000 4475600 3111900 3874400 4603200 5278000 6920900 0 21048000 17623000 0 0 0 0 0 8168100 441 19 455 5493;5494;5495;5496;5497;5498;5499;5500;5501 2851;2852 2851 2 4475600 2938400 2500600 2249500 3255600 6800000 0 4222700 4046700 0 0 0 0 0 3506900 VGGQRLVIVPPELAYGKK GNVLKGLDLGVEGMRVGGQRLVIVPPELAY QRLVIVPPELAYGKKGVQEIPPNATIELDI R V G K K G 1 1 0 0 0 1 1 3 0 1 2 2 0 0 2 0 0 0 1 3 0 0 18 2 1923.1306 Q9SR70 Q9SR70 179 196 FKBP16-4 Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic yes yes 4 0.0090659 28.956 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 20048000 0 0 0 2628100 0 0 0 0 0 0 4154600 4572600 3043600 1868400 3781000 442 219 456 5502;5503;5504;5505;5506;5507 2853 2853 1 0 0 0 1284300 0 0 0 0 0 0 1401200 755130 1115800 1764700 1623300 VGGSTHQVPIEIGSTQGK AIRGVTPDIAVKARRVGGSTHQVPIEIGST STHQVPIEIGSTQGKALAIRWLLGASRKRP R V G G K A 0 0 0 0 0 2 1 4 1 2 0 1 0 0 1 2 2 0 0 2 0 0 18 0 1793.9272 P61841 P61841 80 97 rps7-A 30S ribosomal protein S7, chloroplastic yes yes 3 3.7094E-72 88.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 130310000 4112300 4727700 3805300 14924000 7193200 3645000 18198000 13760000 14366000 5072900 10142000 22274000 0 0 8087400 443 130 457 5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520 2854;2855;2856;2857;2858;2859;2860 2858 7 4112300 4464100 2456000 7293100 4436800 3581300 2951600 2760500 3298800 2574700 3420500 3678300 0 0 3472300 VGGSTHQVPIEIGSTQGKALAIR AIRGVTPDIAVKARRVGGSTHQVPIEIGST PIEIGSTQGKALAIRWLLGASRKRPGRNMA R V G I R W 2 1 0 0 0 2 1 4 1 3 1 1 0 0 1 2 2 0 0 2 0 0 23 1 2318.2706 P61841 P61841 80 102 rps7-A 30S ribosomal protein S7, chloroplastic yes yes 3;4 2.1312E-77 97.095 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 2 1 2 2 2 1 1 1 1 1 219830000 8056800 11290000 19928000 20425000 15344000 4760000 33381000 34634000 28286000 4422200 5835400 20545000 5470900 0 7451700 444 130 458 5521;5522;5523;5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534;5535;5536;5537;5538;5539;5540 2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877 2872 17 8056800 10661000 12862000 9981200 9464300 4676800 5414100 6948100 6495400 2244400 1968100 3392800 2005700 0 3199400 VGHKVLEDGQKVR SNVMLYSKEKDVVSRVGHKVLEDGQKVRYL SRVGHKVLEDGQKVRYLIKTGELIDTIEKW R V G V R Y 0 1 0 1 0 1 1 2 1 0 1 2 0 0 0 0 0 0 0 3 0 0 13 2 1463.8209 P92959;F4K1S8 P92959 151 163 RPL24;At5g54600 50S ribosomal protein L24, chloroplastic yes no 2;3;4 4.9082E-78 129.16 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 2 2 1 2 66448000 0 143030 4350400 3545900 0 0 31608000 12445000 7064700 0 0 5441900 0 1849300 0 445 136 459 5541;5542;5543;5544;5545;5546;5547;5548;5549;5550;5551;5552;5553;5554 2878;2879;2880;2881 2880 4 0 135060 2807800 1732800 0 0 5126500 2496800 1622300 0 0 898680 0 1746500 0 VGIVGK ______________________________ ______________________________ K V G G K Y 0 0 0 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 2 0 0 6 0 571.36935 Q8RXU5 Q8RXU5 8 13 RPL37AC 60S ribosomal protein L37a-2 yes yes 1 6.4968E-43 122.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 330370000 10113000 9885300 26845000 22410000 0 12162000 100910000 0 33291000 20248000 0 49000000 18389000 0 27113000 446 162 460 5555;5556;5557;5558;5559;5560;5561;5562;5563;5564;5565 2882;2883 2882 1 10113000 9334200 17326000 10952000 0 11949000 16366000 0 7644600 10277000 0 8091900 6741900 0 11641000 VGIVGKYGTR ______________________________ KRTKKVGIVGKYGTRYGASIRKQIKKMEVS K V G T R Y 0 1 0 0 0 0 0 3 0 1 0 1 0 0 0 0 1 0 1 2 0 0 10 1 1048.6029 Q8RXU5 Q8RXU5 8 17 RPL37AC 60S ribosomal protein L37a-2 yes yes 2;3 7.3532E-16 88.942 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 1 2 2 2 1 2 485190000 11252000 3201500 22297000 20302000 17271000 16998000 64522000 102340000 82493000 6465500 24755000 51060000 25762000 6252000 30221000 447 162 461 5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585;5586;5587;5588;5589;5590;5591;5592 2884;2885;2886;2887;2888;2889;2890;2891;2892 2885 7 11252000 3023000 14391000 9921300 10653000 16701000 10465000 20532000 18943000 3281500 8348700 8432200 9444900 5904700 12975000 VGLALALKP ISGEVDTKSIDKSAKVGLALALKP______ IDKSAKVGLALALKP_______________ K V G K P - 2 0 0 0 0 0 0 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 9 1 880.57459 Q9SRH5 Q9SRH5 268 276 VDAC1 Mitochondrial outer membrane protein porin 1 yes yes 2 2.8885E-28 115.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 42773000 1853100 1319800 2974500 3075500 0 0 9383000 6606700 6176400 2153600 2658500 5357300 0 1215100 0 448 220 462 5593;5594;5595;5596;5597;5598;5599;5600;5601;5602;5603 2893 2893 0 1853100 1246200 1919800 1502900 0 0 1521800 1325400 1418300 1093000 896610 884710 0 1147600 0 VGLIAARR GHASTVRRDAPPGQKVGLIAARRTGRLRGQ DAPPGQKVGLIAARRTGRLRGQAAASAAKA K V G R R T 2 2 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 1 854.54502 P46286;Q42064 P46286 235 242 RPL8A;RPL8C 60S ribosomal protein L8-1;60S ribosomal protein L8-3 no no 2 0.010345 78.002 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 190180000 5674000 0 14399000 5733100 5055400 0 46476000 37349000 32098000 5314200 9638500 19539000 8904400 0 0 449 104;147 463 5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614 2894;2895 2894 2 5674000 0 9293000 2801600 3118300 0 7538000 7493000 7370700 2697100 3250700 3226600 3264600 0 0 VGVIIGKGGETIK SFQGTTKKIDIPNMRVGVIIGKGGETIKYL MRVGVIIGKGGETIKYLQLQSGAKIQVTRD R V G I K Y 0 0 0 0 0 0 1 4 0 3 0 2 0 0 0 0 1 0 0 2 0 0 13 1 1269.7656 O82762 O82762 145 157 At2g25970 yes yes 3 0.012414 48.004 By MS/MS 1 1823200 0 0 1823200 0 0 0 0 0 0 0 0 0 0 0 0 450 79 464 5615 2896 2896 1 0 0 1176700 0 0 0 0 0 0 0 0 0 0 0 0 VIAANKDRNLYELR TKKYLKKHNVRDWLRVIAANKDRNLYELRY RVIAANKDRNLYELRYFNIAENEGEEED__ R V I L R Y 2 2 2 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 14 2 1673.9213 Q9M9W1;Q9FE58 Q9M9W1 98 111 RPL22B;RPL22C 60S ribosomal protein L22-2;60S ribosomal protein L22-3 yes no 4 3.1861E-41 74.46 By MS/MS By MS/MS By MS/MS 1 1 1 75551000 0 0 0 0 0 0 32976000 20370000 22204000 0 0 0 0 0 0 451 177 465 5616;5617;5618 2897;2898;2899 2897 3 0 0 0 0 0 0 5348400 4086600 5098800 0 0 0 0 0 0 VKGPGLYTEIGKK ______________________________ ______________________________ M V K K K A 0 0 0 0 0 0 1 3 0 1 1 3 0 0 1 0 1 0 1 1 0 0 13 2 1388.8028 Q9SRH5;Q9SMX3 Q9SRH5 2 14 VDAC1;VDAC3 Mitochondrial outer membrane protein porin 1;Mitochondrial outer membrane protein porin 3 yes no 3 3.444E-13 45.661 By MS/MS By MS/MS 1 1 6137200 0 0 0 0 0 0 6137200 0 0 0 0 0 0 0 0 452 220 466 5619;5620 2900;2901 2901 1 0 0 0 0 0 0 995390 0 0 0 0 0 0 0 0 VKYSQEPDNQTK ______________________________ ______________________________ M V K T K S 0 0 1 1 0 2 1 0 0 0 0 2 0 0 1 1 1 0 1 1 0 0 12 1 1435.6943 F4HRW5;P51413 F4HRW5 2 13 At1g67430;RPL17B 60S ribosomal protein L17-2 yes no 2 5.726E-09 84.498 By MS/MS 1 10733000 0 0 0 0 0 0 10733000 0 0 0 0 0 0 0 0 453 35 467 5621 2902 2902 1 0 0 0 0 0 0 1740900 0 0 0 0 0 0 0 0 VLAKALR HAVIDRQKNHGMHFRVLAKALRLSGGDHIH KNHGMHFRVLAKALRLSGGDHIHAGTVVGK R V L L R L 2 1 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 1 769.51741 O03042 O03042 313 319 rbcL Ribulose bisphosphate carboxylase large chain yes yes 2 0.0015074 104.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 373250000 8252100 9818600 29408000 16880000 10940000 9194100 53295000 52982000 58539000 14749000 19200000 39407000 24687000 0 25899000 454 64 468 5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635 2903;2904 2903 0 8252100 9271200 18980000 8248900 6748200 9033500 8644000 10629000 13442000 7485500 6475500 6507800 9050700 0 11119000 VLDPNTVFALVNYISFK YVEKGSHGKIVELVKVLDPNTVFALVNYIS DPNTVFALVNYISFKGKWEKPFEMKHTTER K V L F K G 1 0 2 1 0 0 0 0 0 1 2 1 0 2 1 1 1 0 1 3 0 0 17 0 1939.0455 CON__P34955 CON__P34955 197 213 yes yes 3 0.0090621 48.177 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 33314000 7064200 0 2367200 3244800 873220 1455100 1520800 1617300 1432600 8723600 3485500 0 0 1529400 0 + 455 33 469 5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646 2905 2905 1 7064200 0 1527800 1585700 538610 1429700 246660 324460 328970 4427500 1175500 0 0 1444400 0 VLELAGNAAR SLTIYRCRMSSSDFRVLELAGNAARDNKKN SSDFRVLELAGNAARDNKKNRIIPRHVLLA R V L A R D 3 1 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1012.5665 F4KCF4 F4KCF4 96 105 HTA12 Histone H2A yes yes 2 1.8071E-16 113.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 2 1 1 1 1 1 1 2 547700000 24536000 27762000 32254000 24423000 24889000 18056000 61053000 51630000 57131000 22793000 29789000 88670000 31045000 9273100 44393000 456 62 470 5647;5648;5649;5650;5651;5652;5653;5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664 2906;2907;2908;2909;2910;2911;2912;2913;2914;2915 2906 3 24536000 26214000 20817000 11935000 15352000 17741000 9902300 10358000 13119000 11568000 10047000 14643000 11382000 8758000 19060000 VLELAGNAARDNK SLTIYRCRMSSSDFRVLELAGNAARDNKKN FRVLELAGNAARDNKKNRIIPRHVLLAVRN R V L N K K 3 1 2 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 13 1 1369.7314 F4KCF4 F4KCF4 96 108 HTA12 Histone H2A yes yes 2 2.354E-08 68.016 By MS/MS By MS/MS By MS/MS 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 457 62 471 5665;5666;5667;5668 2916;2917;2918;2919 2918 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 VLGGGSALNAGFYTR QRFVSEDGVINARARVLGGGSALNAGFYTR VLGGGSALNAGFYTRAGTKYVRNMGWDGAL R V L T R A 2 1 1 0 0 0 0 4 0 0 2 0 0 1 0 1 1 0 1 1 0 0 15 0 1481.7627 Q66GI5 Q66GI5 120 134 At1g12570 yes yes 2 7.9487E-19 78.655 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 30285000 0 0 0 0 0 0 5977700 6199700 0 0 0 12182000 0 0 5925900 458 151 472 5669;5670;5671;5672 2920;2921 2920 2 0 0 0 0 0 0 969520 1243800 0 0 0 2011800 0 0 2544200 VLKQVHPDIGISSK MKKKSVETYKIYIFKVLKQVHPDIGISSKA KVLKQVHPDIGISSKAMGIMNSFINDIFEK K V L S K A 0 0 0 1 0 1 0 1 1 2 1 2 0 0 1 2 0 0 0 2 0 0 14 1 1519.8722 Q9LZT0;P40283;O23629;Q9FFC0;Q9LQQ4;Q9SI96 Q9LZT0 65 78 H2B Histone H2B.7;Histone H2B.11;Histone H2B.6;Histone H2B.10;Histone H2B.1;Histone H2B.3 yes no 3 4.5839E-06 52.495 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 136550000 1894200 3921300 9776700 7409700 9371900 4007400 24658000 0 0 7552200 15022000 33407000 10641000 0 8887300 459 70 473 5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684 2922;2923 2922 0 1894200 3702700 6310000 3621000 5780700 3937300 3999300 0 0 3833000 5066300 5516900 3901300 0 3815700 VMLRPASPGTGVIAGGAVR STFPHRSEGDYGAAKVMLRPASPGTGVIAG PASPGTGVIAGGAVRIVLEMAGVENALGKQ K V M V R I 3 2 0 0 0 0 0 4 0 1 1 0 1 0 2 1 1 0 0 3 0 0 19 1 1808.0091 P93014 P93014 231 249 rps5 30S ribosomal protein S5, chloroplastic yes yes 3 2.4984E-45 89.624 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 68603000 1820000 0 0 0 4508500 0 12005000 14133000 11193000 6052200 0 17105000 0 1786500 0 460 137 474 5685;5686;5687;5688;5689;5690;5691;5692 2924;2925;2926;2927;2928 2927 28 5 1820000 0 0 0 2780900 0 1947100 2835400 2570200 3071700 0 2824700 0 1687200 0 VNGTTVNVGIQPSK RRKWVIHIERITREKVNGTTVNVGIQPSKV KVNGTTVNVGIQPSKVVITKLRLDKDRKSL K V N S K V 0 0 2 0 0 1 0 2 0 1 0 1 0 0 1 1 2 0 0 3 0 0 14 0 1412.7623 P51414 P51414 89 102 RPL26A 60S ribosomal protein L26-1 yes yes 2 1.4514E-24 115.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 236290000 3578300 4223300 4750900 10369000 7707700 5381300 39184000 35892000 33099000 12397000 12730000 26679000 16848000 7540100 15913000 461 111 475 5693;5694;5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707 2929;2930;2931;2932;2933;2934 2929 6 3578300 3987900 3066300 5067300 4754200 5287200 6355300 7200500 7600400 6292100 4293400 4405900 6176900 7121200 6832100 VQRLVYR ______________________________ ______________________________ M V Q Y R S 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 7 1 932.55558 Q9FE65 Q9FE65 2 8 RPL34B 60S ribosomal protein L34-2 no no 2 5.9101E-134 132.53 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 161150000 0 5269600 0 11740000 0 0 48146000 34887000 0 7431300 11490000 19807000 0 0 22373000 462 178 476 5708;5709;5710;5711;5712;5713;5714;5715 2935 2935 1 0 4975800 0 5737300 0 0 7808900 6998900 0 3771600 3875300 3271000 0 0 9605800 VQRLVYRSR ______________________________ ______________________________ M V Q S R H 0 3 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 9 2 1175.6887 Q9FE65 Q9FE65 2 10 RPL34B 60S ribosomal protein L34-2 no no 2 0.011553 69.432 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 47899000 0 0 2817500 2929600 0 0 30710000 0 7251600 0 0 0 0 4190300 0 463 178 477 5716;5717;5718;5719;5720 2936 2936 1 0 0 1818400 1431700 0 0 4980900 0 1665200 0 0 0 0 3957500 0 VQVPAKWNPSK KTNTDFLPYNGDGFKVQVPAKWNPSKEIEY DGFKVQVPAKWNPSKEIEYPGQVLRFEDNF K V Q S K E 1 0 1 0 0 1 0 0 0 0 0 2 0 0 2 1 0 1 0 2 0 0 11 1 1252.6928 Q42029 Q42029 105 115 PSBP1 Oxygen-evolving enhancer protein 2-1, chloroplastic yes yes 2;3 1.8868E-08 73.248 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 327120000 8290300 10658000 2585100 0 0 0 0 0 16959000 13665000 61133000 178460000 31589000 0 3786700 464 146 478 5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732 2937;2938;2939;2940;2941;2942;2943 2940 6 8290300 10063000 1668400 0 0 0 0 0 3894200 6935200 20618000 29471000 11581000 0 1625800 VQVPAKWNPSKEIEYPGQVLR KTNTDFLPYNGDGFKVQVPAKWNPSKEIEY WNPSKEIEYPGQVLRFEDNFDATSNLNVMV K V Q L R F 1 1 1 0 0 2 2 1 0 1 1 2 0 0 3 1 0 1 1 3 0 0 21 2 2437.3118 Q42029 Q42029 105 125 PSBP1 Oxygen-evolving enhancer protein 2-1, chloroplastic yes yes 3;4 4.4294E-26 60.317 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 82752000 12605000 11742000 5123000 0 0 0 23373000 9780400 20129000 0 0 0 0 0 0 465 146 479 5733;5734;5735;5736;5737;5738;5739;5740;5741;5742 2944;2945;2946;2947;2948;2949;2950;2951 2951 8 12605000 11087000 3306400 0 0 0 3790900 1962100 4622100 0 0 0 0 0 0 VRVFMYPSNI SKFTSNLPPKSMGARVRVFMYPSNI_____ SMGARVRVFMYPSNI_______________ R V R N I - 0 1 1 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 1 2 0 0 10 1 1224.6325 Q9FZH0;P51422;Q9LMK0;Q9C912 Q9FZH0 102 111 RPL35AB;RPL35AD;RPL35AA;RPL35AC 60S ribosomal protein L35a-2;60S ribosomal protein L35a-4;60S ribosomal protein L35a-1;60S ribosomal protein L35a-3 yes no 2 6.6765E-16 97.473 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 228960000 4278000 6193000 16240000 9984900 7181100 1918100 82902000 30364000 27534000 5463500 6547100 14361000 5757600 3814100 6424400 466 113 480 5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757 2952;2953;2954 2952 23 2 4278000 5847700 10482000 4879500 4429400 1884600 13446000 6091700 6322600 2772900 2208100 2371600 2110800 3602300 2758300 VSDSVPAPSDDAEQLR ______________________________ SDSVPAPSDDAEQLRTAFEGWGTNEDLIIS K V S L R T 2 1 0 3 0 1 1 0 0 0 1 0 0 0 2 3 0 0 0 2 0 0 16 0 1684.7904 Q9SYT0 Q9SYT0 6 21 ANN1 Annexin D1 yes yes 2 5.741E-14 42.001 By MS/MS 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 467 226 481 5758 2955 2955 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 VTANVVVAK ALDRKLLESSPKTLKVTANVVVAKDGTGKF SPKTLKVTANVVVAKDGTGKFKTVNEAVAA K V T A K D 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 4 0 0 9 0 899.54402 A0A1P8ARX5;Q1JPL7 A0A1P8ARX5 264 272 PME18 Pectinesterase/pectinesterase inhibitor 18;Pectinesterase inhibitor 18;Bifunctional pectinesterase 18/rRNA N-glycosylase yes no 2 6.5707E-12 119.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 401760000 8198900 8040100 19968000 35752000 25603000 36724000 0 52833000 35339000 0 76460000 55696000 0 4321000 42824000 468 5 482 5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770 2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967 2963 12 8198900 7591800 12887000 17472000 15792000 36082000 0 10599000 8114900 0 25787000 9197800 0 4080900 18386000 VTGGEVGAASSLAPK PPKLDPSQIVDVYVRVTGGEVGAASSLAPK VTGGEVGAASSLAPKIGPLGLAPKKIGEDI R V T P K I 3 0 0 0 0 0 1 3 0 0 1 1 0 0 1 2 1 0 0 2 0 0 15 0 1342.7092 P50883;Q9LFH5;Q9FF52 P50883 17 31 RPL12A;RPL12B;RPL12C 60S ribosomal protein L12-1;60S ribosomal protein L12-2;60S ribosomal protein L12-3 yes no 2 1.9638E-39 72.643 By MS/MS By MS/MS By MS/MS 1 1 1 20462000 0 0 0 0 0 0 12413000 0 8048300 0 0 0 0 0 0 469 110 483 5771;5772;5773 2968;2969;2970 2969 3 0 0 0 0 0 0 2013300 0 1848100 0 0 0 0 0 0 VTGTYMPHREVK TIRSLLTPYPMNEMRVTGTYMPHREVKAAQ EMRVTGTYMPHREVKAAQGIKIAAQGLEHA R V T V K A 0 1 0 0 0 0 1 1 1 0 0 1 1 0 1 0 2 0 1 2 0 0 12 1 1416.7184 C0SUW8 C0SUW8 779 790 At1g21160 yes yes 2 5.2906E-06 83.206 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 112000000 6056900 4897500 4007400 0 0 0 48219000 20015000 27958000 0 0 0 0 843090 0 470 31 484 5774;5775;5776;5777;5778;5779;5780 2971 2971 4 1 6056900 4624400 2586400 0 0 0 7820600 4015400 6420000 0 0 0 0 796250 0 VTIRADEISNIIRER ______________________________ VTIRADEISNIIRERIEQYNREVTIVNTGT M V T E R I 1 3 1 1 0 0 2 0 0 4 0 0 0 0 0 1 1 0 0 1 0 0 15 2 1783.9904 P56757 P56757 2 16 atpA ATP synthase subunit alpha, chloroplastic yes yes 3 2.4125E-07 66.708 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 80919000 2865800 2736900 5079300 0 4761200 2116600 23369000 9186700 14964000 1449700 3552100 0 3603100 2117800 5117700 471 115 485 5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793 2972;2973;2974 2972 3 2865800 2584300 3278300 0 2936800 2079600 3790200 1843000 3436100 735780 1198000 0 1321000 2000200 2197300 VTVNGAPSVGISVKPSK TREVTNVGAASSVYKVTVNGAPSVGISVKP VNGAPSVGISVKPSKLSFKSVGEKKRYTVT K V T S K L 1 0 1 0 0 0 0 2 0 1 0 2 0 0 2 3 1 0 0 4 0 0 17 1 1638.9305 Q9ZUF6 Q9ZUF6 685 701 At2g05920 yes yes 3 1.5708E-11 44.807 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 134730000 0 0 0 4157200 4973400 10897000 3210200 0 4040200 20539000 23499000 37268000 14008000 5844100 6295200 472 234 486 5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804 2975;2976;2977;2978;2979;2980;2981 2976 7 0 0 0 2031600 3067600 10707000 520670 0 927750 10424000 7925200 6154500 5135500 5519500 2702800 VTVVPSAAALVIK LRVTVKLTVQNRQAKVTVVPSAAALVIKAL AKVTVVPSAAALVIKALKEPERDRKKVKNI K V T I K A 3 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 4 0 0 13 0 1266.7911 P50883;Q9LFH5;Q9FF52 P50883 72 84 RPL12A;RPL12B;RPL12C 60S ribosomal protein L12-1;60S ribosomal protein L12-2;60S ribosomal protein L12-3 yes no 2 7.4761E-21 95.815 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 198850000 0 0 0 17092000 10155000 0 57489000 46566000 28190000 9961800 7067500 15815000 0 0 6516200 473 110 487 5805;5806;5807;5808;5809;5810;5811;5812;5813;5814 2982;2983;2984;2985;2986;2987;2988 2987 6 0 0 0 8352700 6263400 0 9324100 9342100 6473300 5055900 2383600 2611700 0 0 2797700 VTVVPSAAALVIKALK LRVTVKLTVQNRQAKVTVVPSAAALVIKAL TVVPSAAALVIKALKEPERDRKKVKNIKHN K V T L K E 4 0 0 0 0 0 0 0 0 1 2 2 0 0 1 1 1 0 0 4 0 0 16 1 1579.0073 P50883;Q9LFH5;Q9FF52 P50883 72 87 RPL12A;RPL12B;RPL12C 60S ribosomal protein L12-1;60S ribosomal protein L12-2;60S ribosomal protein L12-3 yes no 3 7.3182E-10 62.891 By MS/MS By MS/MS 1 1 13643000 0 0 0 0 0 0 8776400 0 4866800 0 0 0 0 0 0 474 110 488 5815;5816 2989;2990 2989 2 0 0 0 0 0 0 1423500 0 1117600 0 0 0 0 0 0 VVITKLRLDK KVNGTTVNVGIQPSKVVITKLRLDKDRKSL IQPSKVVITKLRLDKDRKSLLERKAKGRAA K V V D K D 0 1 0 1 0 0 0 0 0 1 2 2 0 0 0 0 1 0 0 2 0 0 10 2 1183.7652 P51414 P51414 103 112 RPL26A 60S ribosomal protein L26-1 yes yes 3 0.016387 56.432 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 45486000 1263500 887720 851180 3933400 1231500 0 4193500 6523200 3872300 0 3313300 7474500 5384400 1852300 4705500 475 111 489 5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828;5829 2991;2992;2993 2993 3 1263500 838230 549360 1922200 759630 0 680140 1308700 889190 0 1117400 1234400 1974100 1749400 2020300 WIPCVEFELEHGNTPGYYDGR DVELAKEVDYLLRNKWIPCVEFELEHGNTP FELEHGNTPGYYDGRYWTMWKLPLFGCTDS K W I G R Y 0 1 1 1 1 0 3 3 1 1 1 0 0 1 2 0 1 1 2 1 0 0 21 0 2481.1059 F4KA76 F4KA76 93 113 At5g38410 Ribulose bisphosphate carboxylase small chain yes yes 4 0.0065874 27.324 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 37090000 0 3840400 0 0 0 0 9419900 11103000 7809200 0 0 0 0 4917800 0 476 60 490 5830;5831;5832;5833;5834 2994;2995 2995 2 0 3626300 0 0 0 0 1527800 2227500 1793200 0 0 0 0 4644600 0 WVPVTKLGR GRGGRRGGRASEEEKWVPVTKLGRLVAAGH ASEEEKWVPVTKLGRLVAAGHIKQIEQIYL K W V G R L 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 2 0 0 9 1 1054.6287 P49688;Q9SCM3;Q93VB8;Q8L8Y0 P49688 54 62 RPS2C;RPS2D;RPS2B;RPS2A 40S ribosomal protein S2-3;40S ribosomal protein S2-4;40S ribosomal protein S2-2;40S ribosomal protein S2-1 yes no 3 0.0042703 65.252 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39689000 0 0 0 0 0 726040 6898900 9863800 7006400 2657000 3182900 6090500 3262900 0 0 477 109 491 5835;5836;5837;5838;5839;5840;5841;5842 2996 2996 1 0 0 0 0 0 713350 1118900 1978900 1608900 1348500 1073500 1005800 1196300 0 0 YDSMLGTFK LNDSGGVKNASHLLKYDSMLGTFKAEVKIV ASHLLKYDSMLGTFKAEVKIVDNETISVDG K Y D F K A 0 0 0 1 0 0 0 1 0 0 1 1 1 1 0 1 1 0 1 0 0 0 9 0 1060.4899 P25857 P25857 128 136 GAPB Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic yes yes 2 0.023774 72.138 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 25648000 1277000 1175700 0 0 0 0 9945400 4402800 8847400 0 0 0 0 0 0 478 90 492 5843;5844;5845;5846;5847 2997 2997 15 1 1277000 1110100 0 0 0 0 1613000 883280 2031600 0 0 0 0 0 0 YEDISVLGQRPVEE YGVHKLWERNNVGKRYEDISVLGQRPVEE_ RYEDISVLGQRPVEE_______________ R Y E E E - 0 1 0 1 0 1 3 1 0 1 1 0 0 0 1 1 0 0 1 2 0 0 14 1 1632.7995 Q9LXJ2 Q9LXJ2 59 72 F3C22_130 yes yes 2 4.6874E-47 125.56 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 122160000 0 0 0 7318600 5376000 1446800 35980000 19087000 16268000 0 8553600 19164000 4259500 0 4703500 479 194 493 5848;5849;5850;5851;5852;5853;5854;5855;5856;5857 2998;2999;3000;3001;3002;3003 2999 6 0 0 0 3576500 3316000 1421500 5835600 3829200 3735600 0 2884800 3164700 1561600 0 2019400 YEGVILNKSQNITG HRVTKDDAMKWFQVKYEGVILNKSQNITG_ KYEGVILNKSQNITG_______________ K Y E T G - 0 0 2 0 0 1 1 2 0 2 1 1 0 0 0 1 1 0 1 1 0 0 14 1 1534.7991 P42795;P42794 P42795 169 182 RPL11A;RPL11B 60S ribosomal protein L11-1;60S ribosomal protein L11-2 yes no 2 4.0718E-09 82.749 By matching By MS/MS 1 1 90011000 0 0 892990 0 0 0 89118000 0 0 0 0 0 0 0 0 480 101 494 5858;5859 3004 3004 1 0 0 576350 0 0 0 14454000 0 0 0 0 0 0 0 0 YIATPGKGILAADESTGTIGK AFVGKYADELIKTAKYIATPGKGILAADES KGILAADESTGTIGKRFASINVENIESNRQ K Y I G K R 3 0 0 1 0 0 1 4 0 3 1 2 0 0 1 1 3 0 1 0 0 0 21 1 2062.0946 O65581 O65581 18 38 M3E9.40 Fructose-bisphosphate aldolase yes yes 3 5.3736E-09 46.621 By MS/MS By MS/MS By MS/MS 1 1 1 12553000 4403600 4980100 3169000 0 0 0 0 0 0 0 0 0 0 0 0 481 76 495 5860;5861;5862 3005 3005 1 4403600 4702500 2045300 0 0 0 0 0 0 0 0 0 0 0 0 YISRKGPLVVYGTEGSK SIGIRPGKGKMRNRRYISRKGPLVVYGTEG SRKGPLVVYGTEGSKIVKAFRNLPGVELCH R Y I S K I 0 1 0 0 0 0 1 3 0 1 1 2 0 0 1 2 1 0 2 2 0 0 17 2 1853.0047 Q2V3X4;Q9SF40 Q2V3X4 206 222 At3g09630;RPL4A 60S ribosomal protein L4-1 yes no 3 0.020026 32.341 By MS/MS By matching By matching 1 1 1 18960000 0 0 0 0 0 0 7585700 5794300 5580200 0 0 0 0 0 0 482 141 496 5863;5864;5865 3006 3006 1 0 0 0 0 0 0 1230300 1162400 1281400 0 0 0 0 0 0 YSDQNGLQFVKKQ RSPKEWDRFMRFMERYSDQNGLQFVKKQ__ ERYSDQNGLQFVKKQ_______________ R Y S K Q - 0 0 1 1 0 3 0 1 0 0 1 2 0 1 0 1 0 0 1 1 0 0 13 2 1553.7838 F4JM05;Q8W0Y8 F4JM05 186 198 PSB28 Photosystem II reaction center Psb28 protein;Photosystem II reaction center PSB28 protein, chloroplastic yes no 2;3 5.2867E-22 97.798 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1533000000 67690000 95345000 159440000 56480000 35035000 6358700 239170000 160060000 168590000 48155000 85220000 155700000 108050000 45361000 102340000 483 56 497 5866;5867;5868;5869;5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894 3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017;3018;3019 3016 11 67690000 90029000 102900000 27601000 21610000 6247600 38792000 32112000 38713000 24440000 28741000 25713000 39614000 42841000 43938000 YSEITFPILAPDPATNK NKKNILVIGPVPGQKYSEITFPILAPDPAT EITFPILAPDPATNKDVHFLKYPIYVGGNR K Y S N K D 2 0 1 1 0 0 1 0 0 2 1 1 0 1 3 1 2 0 1 0 0 0 17 0 1875.9618 P56771 P56771 158 174 petA Cytochrome f yes yes 2 0.018351 33.409 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 13415000 0 0 0 0 0 0 0 0 1753700 1497900 0 2148200 3292500 2700200 2022100 484 119 498 5895;5896;5897;5898;5899;5900 3020;3021 3020 2 0 0 0 0 0 0 0 0 402710 760250 0 354750 1207100 2550200 868160 YSQVVSNALDMK PDWFLNRQKDYKDGKYSQVVSNALDMKLRD DGKYSQVVSNALDMKLRDDLERLKKIRNHR K Y S M K L 1 0 1 1 0 1 0 0 0 0 1 1 1 0 0 2 0 0 1 2 0 0 12 0 1353.6599 P34788 P34788 95 106 RPS18A 40S ribosomal protein S18 yes yes 2 3.3619E-05 67.993 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 74784000 2242500 1342200 3099600 2363900 1537900 0 14952000 11403000 10164000 2913400 3957500 7656100 6035500 2661800 4455200 485 95 499 5901;5902;5903;5904;5905;5906;5907;5908;5909;5910;5911;5912;5913;5914 3022;3023 3022 17 2 2242500 1267300 2000500 1155200 948600 0 2425100 2287600 2333800 1478700 1334700 1264300 2212700 2514000 1912800 YSTFPHRSEGDYGAAK AIDARRNIVQVPMTKYSTFPHRSEGDYGAA STFPHRSEGDYGAAKVMLRPASPGTGVIAG K Y S A K V 2 1 0 1 0 0 1 2 1 0 0 1 0 1 1 2 1 0 2 0 0 0 16 1 1784.8118 P93014 P93014 215 230 rps5 30S ribosomal protein S5, chloroplastic yes yes 3 0.02702 36.77 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 74647000 0 0 0 8119200 0 0 14518000 14323000 21333000 0 0 10013000 0 0 6341000 486 137 500 5915;5916;5917;5918;5919;5920 3024 3024 0 0 0 0 3967700 0 0 2354700 2873500 4898600 0 0 1653600 0 0 2722500 YTRTVTSVGGAGTYSVK YPSFAVNVDGVGAYKYTRTVTSVGGAGTYS RTVTSVGGAGTYSVKVTSETTGVKISVEPA K Y T V K V 1 1 0 0 0 0 0 3 0 0 0 1 0 0 0 2 4 0 2 3 0 0 17 1 1745.8948 O65351 O65351 675 691 SBT1.7 Subtilisin-like protease SBT1.7 yes yes 3 4.352E-10 48.405 By MS/MS By matching By MS/MS By matching 1 1 1 1 22357000 0 0 0 0 0 3449200 0 0 0 0 3822000 11962000 3124400 0 0 487 75 501 5921;5922;5923;5924 3025;3026 3025 2 0 0 0 0 0 3389000 0 0 0 0 1289000 1975400 1145500 0 0