Protein IDs Majority protein IDs Peptide counts (all) Peptide counts (razor+unique) Peptide counts (unique) Protein names Gene names Fasta headers Number of proteins Peptides Razor + unique peptides Unique peptides Peptides Control 1 Peptides Control 2 Peptides Control 3 Peptides PEI Infil 1 Peptides PEI Infil 2 Peptides PEI Infil 3 Peptides PEI LL 1 Peptides PEI LL 2 Peptides PEI LL 3 Peptides SHP20 Infil 1 Peptides SHP20 Infil 2 Peptides SHP20 Infil 3 Peptides SHP20 LL 1 Peptides SHP20 LL 2 Peptides SHP20 LL 3 Razor + unique peptides Control 1 Razor + unique peptides Control 2 Razor + unique peptides Control 3 Razor + unique peptides PEI Infil 1 Razor + unique peptides PEI Infil 2 Razor + unique peptides PEI Infil 3 Razor + unique peptides PEI LL 1 Razor + unique peptides PEI LL 2 Razor + unique peptides PEI LL 3 Razor + unique peptides SHP20 Infil 1 Razor + unique peptides SHP20 Infil 2 Razor + unique peptides SHP20 Infil 3 Razor + unique peptides SHP20 LL 1 Razor + unique peptides SHP20 LL 2 Razor + unique peptides SHP20 LL 3 Unique peptides Control 1 Unique peptides Control 2 Unique peptides Control 3 Unique peptides PEI Infil 1 Unique peptides PEI Infil 2 Unique peptides PEI Infil 3 Unique peptides PEI LL 1 Unique peptides PEI LL 2 Unique peptides PEI LL 3 Unique peptides SHP20 Infil 1 Unique peptides SHP20 Infil 2 Unique peptides SHP20 Infil 3 Unique peptides SHP20 LL 1 Unique peptides SHP20 LL 2 Unique peptides SHP20 LL 3 Sequence coverage [%] Unique + razor sequence coverage [%] Unique sequence coverage [%] Mol. weight [kDa] Sequence length Sequence lengths Q-value Score Identification type Control 1 Identification type Control 2 Identification type Control 3 Identification type PEI Infil 1 Identification type PEI Infil 2 Identification type PEI Infil 3 Identification type PEI LL 1 Identification type PEI LL 2 Identification type PEI LL 3 Identification type SHP20 Infil 1 Identification type SHP20 Infil 2 Identification type SHP20 Infil 3 Identification type SHP20 LL 1 Identification type SHP20 LL 2 Identification type SHP20 LL 3 Sequence coverage Control 1 [%] Sequence coverage Control 2 [%] Sequence coverage Control 3 [%] Sequence coverage PEI Infil 1 [%] Sequence coverage PEI Infil 2 [%] Sequence coverage PEI Infil 3 [%] Sequence coverage PEI LL 1 [%] Sequence coverage PEI LL 2 [%] Sequence coverage PEI LL 3 [%] Sequence coverage SHP20 Infil 1 [%] Sequence coverage SHP20 Infil 2 [%] Sequence coverage SHP20 Infil 3 [%] Sequence coverage SHP20 LL 1 [%] Sequence coverage SHP20 LL 2 [%] Sequence coverage SHP20 LL 3 [%] Intensity Intensity Control 1 Intensity Control 2 Intensity Control 3 Intensity PEI Infil 1 Intensity PEI Infil 2 Intensity PEI Infil 3 Intensity PEI LL 1 Intensity PEI LL 2 Intensity PEI LL 3 Intensity SHP20 Infil 1 Intensity SHP20 Infil 2 Intensity SHP20 Infil 3 Intensity SHP20 LL 1 Intensity SHP20 LL 2 Intensity SHP20 LL 3 LFQ intensity Control 1 LFQ intensity Control 2 LFQ intensity Control 3 LFQ intensity PEI Infil 1 LFQ intensity PEI Infil 2 LFQ intensity PEI Infil 3 LFQ intensity PEI LL 1 LFQ intensity PEI LL 2 LFQ intensity PEI LL 3 LFQ intensity SHP20 Infil 1 LFQ intensity SHP20 Infil 2 LFQ intensity SHP20 Infil 3 LFQ intensity SHP20 LL 1 LFQ intensity SHP20 LL 2 LFQ intensity SHP20 LL 3 MS/MS count Control 1 MS/MS count Control 2 MS/MS count Control 3 MS/MS count PEI Infil 1 MS/MS count PEI Infil 2 MS/MS count PEI Infil 3 MS/MS count PEI LL 1 MS/MS count PEI LL 2 MS/MS count PEI LL 3 MS/MS count SHP20 Infil 1 MS/MS count SHP20 Infil 2 MS/MS count SHP20 Infil 3 MS/MS count SHP20 LL 1 MS/MS count SHP20 LL 2 MS/MS count SHP20 LL 3 MS/MS count Peptide sequences Only identified by site Reverse Potential contaminant id Peptide IDs Peptide is razor Mod. peptide IDs Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs Oxidation (M) site positions Taxonomy IDs A0A1I9LMY7;Q9SS17;Q8LC83 A0A1I9LMY7;Q9SS17;Q8LC83 1;1;1 1;1;1 1;1;1 40S ribosomal protein S24-1;40S ribosomal protein S24-2 RPS24A;RPS24B tr|A0A1I9LMY7|A0A1I9LMY7_ARATH 40S ribosomal protein S24 OS=Arabidopsis thaliana OX=3702 GN=At3g04920 PE=1 SV=1;sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1;sp|Q8LC83|RS242_ARATH 40S ribosomal protei 3 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 8.9 8.9 8.9 12.909 112 112;133;133 0 6.2461 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 8.9 8.9 8.9 8.9 8.9 8.9 0 8.9 8.9 8.9 8.9 8.9 8.9 0 8.9 633190000 2319000 1824900 26634000 93024000 61090000 72660000 0 22200000 158130000 44742000 40480000 106820000 1872000 0 1398500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2 AEKAVTIRTR 0 18 True 18 194;195;196;197;198;199;200;201;202;203;204;205;206;207;208;209;210;211 121;122 121 -1;-1;-1 A0A1I9LNY1;Q6NLP7 A0A1I9LNY1;Q6NLP7 1;1 1;1 1;1 GDSL esterase/lipase At3g62280 tr|A0A1I9LNY1|A0A1I9LNY1_ARATH GDSL-like Lipase/Acylhydrolase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=At3g62280 PE=1 SV=1;sp|Q6NLP7|GDL60_ARATH GDSL esterase/lipase At3g62280 OS=Arabidopsis thaliana OX=3702 GN=At3g62280 PE=2 SV=1 2 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 3.4 3.4 3.4 33.207 297 297;365 0 7.5518 By MS/MS 0 0 0 0 0 0 3.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 GLLSLCNELR 1 187 True 194 2349 1197 1197 -1;-1 A0A1I9LR27;F4JBC9;Q9LU86 A0A1I9LR27;F4JBC9;Q9LU86 1;1;1 1;1;1 1;1;1 Peroxiredoxin Q, chloroplastic ATPRX Q;PRXQ tr|A0A1I9LR27|A0A1I9LR27_ARATH Thioredoxin-dependent peroxiredoxin OS=Arabidopsis thaliana OX=3702 GN=PRXQ PE=1 SV=1;tr|F4JBC9|F4JBC9_ARATH Thioredoxin-dependent peroxiredoxin OS=Arabidopsis thaliana OX=3702 GN=PRXQ PE=1 SV=1;sp|Q9LU86|PRXQ_ARATH Peroxired 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.3 14.3 14.3 17.028 154 154;217;216 0 13.203 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 14.3 290510000 11413000 10488000 11228000 24715000 15749000 3240000 27922000 29084000 22521000 16437000 27025000 47007000 19171000 8434300 16080000 6417900 5747200 4722600 7348900 5872700 0 2890600 4067700 3753700 5225200 5626500 5063100 4648000 4936500 4721200 1 0 0 2 1 0 2 1 1 0 1 1 1 1 0 12 AGAEVIGISGDDSASHKAFASK 2 30 True 30 364;365;366;367;368;369;370;371;372;373;374;375;376;377;378;379;380;381;382;383;384;385;386;387;388;389;390;391;392 184;185;186;187;188;189;190;191;192;193;194;195 190 -1;-1;-1 A0A1I9LSB4;F4KDR2;Q9SF53;Q9M3D2;Q9LZ41;O80626 A0A1I9LSB4;F4KDR2;Q9SF53;Q9M3D2;Q9LZ41;O80626 2;2;2;2;2;2 2;2;2;2;2;2 2;2;2;2;2;2 60S ribosomal protein L35-1;60S ribosomal protein L35-3;60S ribosomal protein L35-4;60S ribosomal protein L35-2 At5g02610;RPL35A;RPL35C;RPL35D;RPL35B tr|A0A1I9LSB4|A0A1I9LSB4_ARATH Ribosomal L29 family protein OS=Arabidopsis thaliana OX=3702 GN=At3g55170 PE=1 SV=1;tr|F4KDR2|F4KDR2_ARATH Ribosomal L29 family protein OS=Arabidopsis thaliana OX=3702 GN=At5g02610 PE=1 SV=1;sp|Q9SF53|RL351_ARATH 60S ribosoma 6 2 2 2 1 1 1 2 1 1 2 2 2 1 1 1 1 2 1 1 1 1 2 1 1 2 2 2 1 1 1 1 2 1 1 1 1 2 1 1 2 2 2 1 1 1 1 2 1 22.8 22.8 22.8 11.498 101 101;146;123;123;123;123 0 46.259 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 13.9 13.9 13.9 22.8 8.9 13.9 22.8 22.8 22.8 13.9 13.9 13.9 13.9 22.8 13.9 347100000 2500800 436460 4179800 16106000 1000700 4309800 122110000 53461000 50676000 17962000 16486000 28989000 11334000 2874200 14671000 0 0 0 2144800 0 0 10753000 0 0 5054600 0 0 0 3650800 0 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 4 ARIKVHELR;VAKVTGGAPNKLSK 3 58;424 True;True 61;437 668;669;670;671;672;673;674;5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265 318;319;2712;2713;2714;2715 319;2714 -1;-1;-1;-1;-1;-1 A0A1P8AQ97;A0A1P8AQ91;A0A1P8AQ79;A0A1P8AQ67 A0A1P8AQ97;A0A1P8AQ91;A0A1P8AQ79;A0A1P8AQ67 1;1;1;1 1;1;1;1 1;1;1;1 tr|A0A1P8AQ97|A0A1P8AQ97_ARATH Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1;tr|A0A1P8AQ91|A0A1P8AQ91_ARATH Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1;tr|A0A1P8AQ79|A0A1P8AQ79_ARATH Uncha 4 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 6.3 6.3 6.3 34.247 287 287;304;337;340 0 6.1604 By MS/MS 0 0 0 0 0 0 0 0 0 0 0 6.3 0 0 0 400350000 0 0 0 0 0 0 0 0 0 0 0 400350000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 RMEVVEETCKHMEEVVVK 4 338 True 349 4202 2129 2129 -1;-1;-1;-1 A0A1P8ARX5;Q1JPL7 A0A1P8ARX5;Q1JPL7 1;1 1;1 1;1 Pectinesterase/pectinesterase inhibitor 18;Pectinesterase inhibitor 18;Bifunctional pectinesterase 18/rRNA N-glycosylase PME18 tr|A0A1P8ARX5|A0A1P8ARX5_ARATH Pectinesterase OS=Arabidopsis thaliana OX=3702 GN=PMEPCRA PE=1 SV=1;sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana OX=3702 GN=PME18 PE=1 SV=3 2 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1.6 1.6 1.6 64.065 578 578;557 0 15.182 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1.6 1.6 1.6 1.6 1.6 1.6 0 1.6 1.6 0 1.6 1.6 0 1.6 1.6 401760000 8198900 8040100 19968000 35752000 25603000 36724000 0 52833000 35339000 0 76460000 55696000 0 4321000 42824000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 12 VTANVVVAK 5 468 True 482 5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770 2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967 2963 -1;-1 A0A1P8ASL8;Q9C7N4 A0A1P8ASL8;Q9C7N4 2;2 2;2 2;2 GDSL esterase/lipase At1g29670 tr|A0A1P8ASL8|A0A1P8ASL8_ARATH GDSL-like Lipase/Acylhydrolase superfamily protein OS=Arabidopsis thaliana OX=3702 GN=At1g29670 PE=1 SV=1;sp|Q9C7N4|GDL15_ARATH GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana OX=3702 GN=At1g29670 PE=2 SV=1 2 2 2 2 1 0 0 2 1 1 1 1 1 0 1 2 1 0 1 1 0 0 2 1 1 1 1 1 0 1 2 1 0 1 1 0 0 2 1 1 1 1 1 0 1 2 1 0 1 7.9 7.9 7.9 47.73 431 431;363 0 14.672 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 4.2 0 0 7.9 4.2 4.2 4.2 4.2 4.2 0 4.2 7.9 4.2 0 4.2 82141000 1579600 0 0 6817700 5189200 3116900 7720100 10693000 4304700 0 9479300 21738000 5875000 0 5626900 0 0 0 2088200 0 0 0 0 0 0 0 2269800 0 0 0 0 0 0 1 0 0 1 2 0 0 1 1 0 0 1 7 EETGRQLGQRISFSGQVR;QILSGVNYASAAAGIR 6 134;326 True;True 139;337 1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;4103;4104 933;934;935;936;937;938;2090 933;2090 -1;-1 A0A1P8ATL2;Q9SA52 A0A1P8ATL2;Q9SA52 2;2 2;2 2;2 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic CSP41B tr|A0A1P8ATL2|A0A1P8ATL2_ARATH Chloroplast RNA binding protein OS=Arabidopsis thaliana OX=3702 GN=CRB PE=1 SV=1;sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1 2 2 2 2 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 8.7 8.7 8.7 43.266 379 379;378 0 90.292 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3.2 3.2 3.2 3.2 3.2 3.2 8.7 8.7 8.7 3.2 3.2 3.2 3.2 3.2 3.2 330670000 2942700 4793200 5851100 9309700 16981000 11144000 84008000 86754000 78312000 3433100 4677000 7556700 6869900 3439900 4594900 0 0 0 0 8724300 9241200 10950000 14634000 12691000 0 0 0 0 0 0 0 1 1 1 2 1 1 3 3 1 0 0 1 0 1 16 AGRPIPVPNSGIQISQLGHVK;ASREIFNISGEK 7 39;76 True;True 39;79 451;452;453;834;835;836;837;838;839;840;841;842;843;844;845;846;847;848;849;850;851;852;853 223;435;436;437;438;439;440;441;442;443;444;445;446;447;448;449;450 223;447 -1;-1 F4I2Y2;Q94K06;A0A1P8AU61 F4I2Y2;Q94K06;A0A1P8AU61 1;1;1 1;1;1 1;1;1 At1g22660;T22J18.17 tr|F4I2Y2|F4I2Y2_ARATH Polynucleotide adenylyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN=At1g22660 PE=1 SV=1;tr|Q94K06|Q94K06_ARATH Polynucleotide adenylyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN=At1g22660 PE=1 SV=1; 3 1 1 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 3.3 3.3 3.3 68.697 603 603;605;610 0.0044643 5.9703 By matching By matching By MS/MS By MS/MS 0 0 3.3 0 0 0 3.3 3.3 3.3 0 0 0 0 0 0 14433000 0 0 1269700 0 0 0 6100700 3379400 3682900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 2 IWDAKPLVNGREIMQIAELK 8 243 True 251 2964;2965;2966;2967 1486;1487 1487 -1;-1;-1 A0A1P8AUL0;A0A1P8AUP1;F4I336;A0A1P8AUL5 A0A1P8AUL0;A0A1P8AUP1;F4I336;A0A1P8AUL5 1;1;1;1 1;1;1;1 1;1;1;1 At1g29730 tr|A0A1P8AUL0|A0A1P8AUL0_ARATH Leucine-rich repeat transmembrane protein kinase OS=Arabidopsis thaliana OX=3702 GN=At1g29730 PE=4 SV=1;tr|A0A1P8AUP1|A0A1P8AUP1_ARATH Leucine-rich repeat transmembrane protein kinase OS=Arabidopsis thaliana OX=3702 GN=At1g29 4 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1.3 1.3 1.3 101.53 915 915;947;969;1001 0 7.9519 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1.3 1.3 1.3 1.3 0 0 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 74236000 2255400 2214400 3373800 5051700 0 0 11665000 9674400 8152800 3265900 5045600 11528000 5532800 2679600 3796200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 3 GRLPDGTLIAVK 9 197 True 204 2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443 1227;1228;1229;1230;1231 1227 -1;-1;-1;-1 B9DG18;A0A1P8B564;A0A1P8AWT7;Q42547;P25819;Q2V4M4;F4HUL6;F4JM86 B9DG18;A0A1P8B564;A0A1P8AWT7;Q42547;P25819;Q2V4M4;F4HUL6;F4JM86 2;2;2;2;2;1;1;1 2;2;2;2;2;1;1;1 2;2;2;2;2;1;1;1 Catalase-3;Catalase-2;Catalase CAT3;CAT2 tr|B9DG18|B9DG18_ARATH Catalase OS=Arabidopsis thaliana OX=3702 GN=CAT3 PE=1 SV=1;tr|A0A1P8B564|A0A1P8B564_ARATH Catalase OS=Arabidopsis thaliana OX=3702 GN=CAT2 PE=1 SV=1;tr|A0A1P8AWT7|A0A1P8AWT7_ARATH Catalase OS=Arabidopsis thaliana OX=3702 GN=CAT3 PE=1 8 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 4.5 4.5 4.5 55.967 485 485;492;551;492;492;377;427;474 0 18.643 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4.5 4.5 2.3 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 255130000 4086100 5365100 4443400 10258000 9357200 4596700 24473000 31407000 25063000 12992000 21422000 28812000 37309000 12386000 23155000 0 0 0 0 0 0 0 4935800 0 5233700 5248900 0 0 0 6160000 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 4 APGVQTPVIVR;LASRLNVRPSI 10 55;257 True;True 58;265 633;634;635;636;637;638;639;640;641;642;643;644;645;646;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075 303;304;305;306;1525 306;1525 -1;-1;-1;-1;-1;-1;-1;-1 A0A1P8AYN7;F4ILG6;O22193 A0A1P8AYN7;F4ILG6;O22193 1;1;1 1;1;1 1;1;1 U-box domain-containing protein 4 At2g23140;PUB4 tr|A0A1P8AYN7|A0A1P8AYN7_ARATH RING-type E3 ubiquitin transferase OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=1;tr|F4ILG6|F4ILG6_ARATH RING-type E3 ubiquitin transferase OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=1;sp|O22193|PUB4_ARATH U-box domai 3 1 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 2.7 2.7 2.7 68.38 637 637;829;826 0.0045249 6.0178 By MS/MS By MS/MS By MS/MS 0 0 0 0 2.7 0 0 2.7 2.7 0 0 0 0 0 0 322130000 0 0 0 0 6868800 0 0 160820000 154440000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 KDAATALFNLSIHQENK 11 245 True 253 2975;2976;2977 1492 1492 -1;-1;-1 A0A1P8AYX4;F4JPJ7;P19456;P20649 A0A1P8AYX4;F4JPJ7;P19456;P20649 1;1;1;1 1;1;1;1 1;1;1;1 ATPase 2, plasma membrane-type;ATPase 1, plasma membrane-type HA2;AHA2;AHA1 tr|A0A1P8AYX4|A0A1P8AYX4_ARATH Plasma membrane ATPase OS=Arabidopsis thaliana OX=3702 GN=HA1 PE=1 SV=1;tr|F4JPJ7|F4JPJ7_ARATH Plasma membrane ATPase OS=Arabidopsis thaliana OX=3702 GN=HA2 PE=1 SV=1;sp|P19456|PMA2_ARATH ATPase 2, plasma membrane-type OS=Ara 4 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1.9 1.9 1.9 96.857 885 885;981;948;949 0 6.4951 By matching By MS/MS 0 0 0 0 0 0 1.9 1.9 0 0 0 0 0 0 0 12204000 0 0 0 0 0 0 2774400 9430000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 AGIREVHFLPFNPVDKR 12 33 True 33 406;407 201 201 -1;-1;-1;-1 A0A1P8B2C7;F4IGR5;F4IGR4;P51407 A0A1P8B2C7;F4IGR5;F4IGR4;P51407 3;3;3;3 3;3;3;3 3;3;3;3 60S acidic ribosomal protein P2-1 At2g27720;RPP2A tr|A0A1P8B2C7|A0A1P8B2C7_ARATH 60S acidic ribosomal protein family OS=Arabidopsis thaliana OX=3702 GN=At2g27720 PE=1 SV=1;tr|F4IGR5|F4IGR5_ARATH 60S acidic ribosomal protein family OS=Arabidopsis thaliana OX=3702 GN=At2g27720 PE=1 SV=1;tr|F4IGR4|F4IGR4_ARA 4 3 3 3 1 1 2 3 3 2 3 3 3 2 1 2 1 2 1 1 1 2 3 3 2 3 3 3 2 1 2 1 2 1 1 1 2 3 3 2 3 3 3 2 1 2 1 2 1 40.7 40.7 40.7 9.178 91 91;127;130;115 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 40.7 608980000 6168400 4908600 8813200 41981000 45408000 29112000 129480000 119730000 69390000 21436000 16734000 76087000 18347000 8077200 13304000 0 0 7160100 12684000 17164000 25698000 16608000 17321000 13233000 9626700 0 10503000 0 9288600 0 0 1 1 1 1 3 2 3 3 1 1 1 0 1 1 20 LASVPSGGGGGVAVASATSGGGGGGGAPAAESK;LASVPSGGGGGVAVASATSGGGGGGGAPAAESKK;LASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEK 13 258;259;260 True;True;True 266;267;268 3076;3077;3078;3079;3080;3081;3082;3083;3084;3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107 1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542;1543;1544;1545 1526;1529;1535 -1;-1;-1;-1 A0A1P8B3P8;F4JW21;A0A1P8B3N6;F4JW20 A0A1P8B3P8;F4JW21;A0A1P8B3N6;F4JW20 1;1;1;1 1;1;1;1 1;1;1;1 At4g39420 tr|A0A1P8B3P8|A0A1P8B3P8_ARATH Spatacsin carboxy-terminus protein OS=Arabidopsis thaliana OX=3702 GN=At4g39420 PE=1 SV=1;tr|F4JW21|F4JW21_ARATH Spatacsin carboxy-terminus protein OS=Arabidopsis thaliana OX=3702 GN=At4g39420 PE=1 SV=1;tr|A0A1P8B3N6|A0A1P8B3 4 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 0 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 1 0 0.4 0.4 0.4 267.47 2397 2397;2513;3181;3184 0 6.514 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0 0 0.4 0.4 0.4 0 0.4 0 148800000 5988200 9456500 6604300 12157000 10066000 4233500 61749000 0 0 9519000 7793000 16530000 0 4699600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 4 HIEEELHHTK 14 201 True 208 2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525 1266;1267;1268;1269;1270;1271;1272 1272 -1;-1;-1;-1 A0A1P8B5H3;O22773 A0A1P8B5H3;O22773 1;1 1;1 1;1 Thylakoid lumenal 16.5 kDa protein, chloroplastic tr|A0A1P8B5H3|A0A1P8B5H3_ARATH Chloroplast thylakoid lumen protein OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=1;sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3 2 1 1 1 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 4.5 4.5 4.5 29.713 266 266;216 0 29.406 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 4.5 4.5 0 4.5 0 0 4.5 4.5 4.5 4.5 0 4.5 4.5 4.5 4.5 57885000 3050400 2245000 0 1405600 0 0 17302000 0 10253000 1816200 0 4665400 15963000 0 1183400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 1 0 6 LAFVSSAGAFEK 15 254 True 262 3030;3031;3032;3033;3034;3035;3036;3037;3038;3039;3040 1511;1512;1513;1514;1515;1516 1513 -1;-1 A0A1P8BC48;F4K4M0 A0A1P8BC48;F4K4M0 1;1 1;1 1;1 QWRF motif-containing protein 9 QWRF9 tr|A0A1P8BC48|A0A1P8BC48_ARATH QWRF motif protein OS=Arabidopsis thaliana OX=3702 GN=At5g43155 PE=4 SV=1;sp|F4K4M0|QWRF9_ARATH QWRF motif-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=QWRF9 PE=3 SV=2 2 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 7.1 7.1 7.1 25.946 238 238;513 0.008658 5.8765 By MS/MS By MS/MS 0 0 0 0 0 0 7.1 7.1 0 0 0 0 0 0 0 121070000 0 0 0 0 0 0 83230000 37843000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 TAATISPSFNANVKQNK 16 380 True 392 4656;4657 2363;2364 2364 -1;-1 F4K007;A0A1P8BF32;Q39043;Q9LKR3 F4K007;A0A1P8BF32;Q39043;Q9LKR3 1;1;1;1 1;1;1;1 1;1;1;1 Mediator of RNA polymerase II transcription subunit 37f;Mediator of RNA polymerase II transcription subunit 37a BIP2;MED37F;MED37A tr|F4K007|F4K007_ARATH Heat shock protein 70 (Hsp 70) family protein OS=Arabidopsis thaliana OX=3702 GN=BIP2 PE=1 SV=1;tr|A0A1P8BF32|A0A1P8BF32_ARATH Heat shock protein 70 (Hsp 70) family protein OS=Arabidopsis thaliana OX=3702 GN=BIP2 PE=1 SV=1;sp|Q39043| 4 1 1 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 1.8 1.8 1.8 67.4 613 613;673;668;669 1 -2 By MS/MS By MS/MS By matching By MS/MS 0 0 1.8 0 0 0 1.8 1.8 1.8 0 0 0 0 0 0 22347000 0 0 3239800 0 0 0 6644000 6242300 6220600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 NALETYVYNMK + 17 301 True 311 3616;3617;3618;3619 1796 1796 0 525 -1;-1;-1;-1 Q8W112;A0A1P8BG25 Q8W112;A0A1P8BG25 1;1 1;1 1;1 At5g20950 tr|Q8W112|Q8W112_ARATH Beta-D-glucan exohydrolase-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g20950 PE=1 SV=1;tr|A0A1P8BG25|A0A1P8BG25_ARATH Glycosyl hydrolase family protein OS=Arabidopsis thaliana OX=3702 GN=At5g20950 PE=1 SV=1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1.4 1.4 1.4 67.926 624 624;702 0 10.344 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1.4 0 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 428870000 3324400 0 4188000 23444000 14397000 11672000 37881000 32857000 25044000 10737000 35220000 167650000 27427000 6777400 28250000 0 0 0 0 0 2363700 0 0 0 1525300 0 18242000 0 0 0 0 0 0 1 1 1 0 0 1 1 1 1 0 0 0 7 IGQMVQIER 18 217 True 224;225 2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701;2702;2703;2704;2705 1325;1326;1327;1328;1329;1330;1331;1332;1333 1327 1 53 -1;-1 A0A2H1ZEA9;O65396 A0A2H1ZEA9;O65396 5;5 5;5 5;5 Aminomethyltransferase, mitochondrial GDCST tr|A0A2H1ZEA9|A0A2H1ZEA9_ARATH Aminomethyltransferase OS=Arabidopsis thaliana OX=3702 GN=At1g11860 PE=1 SV=1;sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDCST PE=2 SV=1 2 5 5 5 2 2 1 2 3 4 1 3 2 0 1 2 0 0 2 2 2 1 2 3 4 1 3 2 0 1 2 0 0 2 2 2 1 2 3 4 1 3 2 0 1 2 0 0 2 10.9 10.9 10.9 46.352 423 423;408 0 59.342 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 10.9 5.4 5.4 5.4 9 9 5.4 10.9 10.9 0 2.6 6.1 0 0 5.4 166210000 6892600 4901600 3874400 8623500 16634000 17747000 5715800 31977000 19989000 0 4133400 36822000 0 0 8897800 0 4175300 0 4055400 3626300 7058800 0 3995600 0 0 0 3365200 0 0 2863600 0 0 0 1 0 3 1 2 1 0 1 2 0 0 0 11 IGEITSGGFSPNLK;IGEITSGGFSPNLKK;IGEITSGGFSPNLKKNIAMGYVK;VGFFSSGPPAR;VGFFSSGPPARSHSEVHDESGNK 19 209;210;211;440;441 True;True;True;True;True 216;217;218;454;455 2589;2590;2591;2592;2593;2594;2595;2596;5485;5486;5487;5488;5489;5490;5491;5492;5493;5494;5495;5496;5497;5498;5499;5500;5501 1297;1298;1299;1300;2846;2847;2848;2849;2850;2851;2852 1297;1298;1300;2847;2851 -1;-1 F4IMB5;A0A2P2CLF9;P92549 F4IMB5;A0A2P2CLF9;P92549 2;2;2 2;2;2 2;2;2 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial At2g07698;ATPA tr|F4IMB5|F4IMB5_ARATH ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g07698 PE=1 SV=1;tr|A0A2P2CLF9|A0A2P2CLF9_ARATH ATP synthase subunit alpha OS=Arabidopsis thaliana OX=3702 GN=atp1 PE=3 SV=1;sp|P92549|ATPAM_ARATH ATP sy 3 2 2 2 2 2 2 2 2 1 2 2 2 1 0 2 1 1 1 2 2 2 2 2 1 2 2 2 1 0 2 1 1 1 2 2 2 2 2 1 2 2 2 1 0 2 1 1 1 1.5 1.5 1.5 85.932 777 777;507;507 0 21.031 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1.5 1.5 1.5 1.5 1.5 1.4 1.5 1.5 1.5 1.4 0 1.5 1.4 1.4 1.4 124490000 3490400 3367500 6002300 4470700 8802900 3273900 23203000 14822000 15956000 3063600 0 29092000 3398100 1204500 4344600 2074500 1670700 2288700 0 3144100 0 2236600 1761000 2170700 0 0 2714400 0 0 0 2 1 2 1 2 0 2 1 2 0 0 1 0 0 1 15 RVEVKAPGILER;VEVKAPGILER 20 343;433 True;True 354;447 4266;4267;4268;4269;4270;4271;4272;4273;4274;5397;5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408;5409;5410 2168;2169;2170;2171;2172;2173;2174;2175;2798;2799;2800;2801;2802;2803;2804;2805 2171;2801 -1;-1;-1 P41127;A8MQA1;F4IWP7 P41127;A8MQA1 5;5;2 5;5;2 4;4;1 60S ribosomal protein L13-1;60S ribosomal protein L13 RPL13B;BBC1 sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1;tr|A8MQA1|A8MQA1_ARATH 60S ribosomal protein L13 OS=Arabidopsis thaliana OX=3702 GN=BBC1 PE=1 SV=1 3 5 5 4 2 3 4 1 0 0 5 5 4 0 0 0 0 0 2 2 3 4 1 0 0 5 5 4 0 0 0 0 0 2 2 2 3 1 0 0 4 4 3 0 0 0 0 0 1 26.7 26.7 17 23.767 206 206;204;153 0 42.691 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 10.7 20.4 26.7 5.3 0 0 26.7 26.7 21.4 0 0 0 0 0 15 229440000 10133000 17071000 50087000 1707200 0 0 61351000 47517000 33514000 0 0 0 0 0 8060800 4195200 7355000 26352000 0 0 0 5230700 4205000 6803000 0 0 0 0 0 0 0 1 3 0 0 0 1 2 2 0 0 0 0 0 0 9 IFPRPTSGPLRPVVHGQTLK;SLEGLQTNVQR;SLEGLQTNVQRLK;TGKGFTLEELK;TYKTKLVIFPR 21 207;359;360;390;420 True;True;True;True;True 214;370;371;403;433 2569;2570;2571;2572;2573;2574;4416;4417;4418;4419;4420;4421;4422;4423;4785;4786;4787;4788;4789;5228;5229;5230;5231;5232;5233;5234 1295;2275;2276;2412;2701;2702;2703;2704;2705;2706 1295;2275;2276;2412;2701 -1;-1;-1 A8MQP1;F4JTV4;Q9LK36;O23255 A8MQP1;F4JTV4;Q9LK36;O23255 1;1;1;1 1;1;1;1 1;1;1;1 Adenosylhomocysteinase;Adenosylhomocysteinase 2;Adenosylhomocysteinase 1 MEE58;SAHH2;SAHH1 tr|A8MQP1|A8MQP1_ARATH Adenosylhomocysteinase OS=Arabidopsis thaliana OX=3702 GN=HOG1 PE=1 SV=1;tr|F4JTV4|F4JTV4_ARATH Adenosylhomocysteinase OS=Arabidopsis thaliana OX=3702 GN=HOG1 PE=1 SV=1;sp|Q9LK36|SAHH2_ARATH Adenosylhomocysteinase 2 OS=Arabidopsis th 4 1 1 1 0 0 1 1 0 0 1 1 1 1 1 1 1 1 1 0 0 1 1 0 0 1 1 1 1 1 1 1 1 1 0 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1.8 1.8 1.8 35.531 325 325;440;485;485 0 9.462 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 1.8 1.8 0 0 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 421910000 0 0 20770000 25611000 0 0 31544000 27756000 19846000 48002000 40357000 106980000 46687000 23988000 30372000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ALLVEK 22 47 True 49 554;555;556;557;558;559;560;561;562;563;564 277;278;279;280;281;282 278 -1;-1;-1;-1 A8MQQ1;P17094 A8MQQ1;P17094 1;1 1;1 1;1 60S ribosomal protein L3-1 RP1;ARP1 tr|A8MQQ1|A8MQQ1_ARATH Ribosomal protein 1 OS=Arabidopsis thaliana OX=3702 GN=RP1 PE=1 SV=1;sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=1 SV=5 2 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 6.2 6.2 6.2 35.064 306 306;389 0 7.0374 By MS/MS By matching By MS/MS 0 0 0 0 0 0 6.2 6.2 6.2 0 0 0 0 0 0 13358000 0 0 0 0 0 0 6913600 3703000 2740900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 FIDTASIFGHGRFQTSLEK 23 165 True 171 2057;2058;2059 1096 1096 -1;-1 A8MRC4;P48006 A8MRC4;P48006 1;1 1;1 1;1 Elongation factor 1-delta 1 At1g30230 tr|A8MRC4|A8MRC4_ARATH Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Arabidopsis thaliana OX=3702 GN=eEF-1Bb1 PE=1 SV=1;sp|P48006|EF1D1_ARATH Elongation factor 1-delta 1 OS=Arabidopsis thaliana OX=3702 GN=At1g30230 PE=1 SV=2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 5 5 5 28.776 260 260;231 0 17.766 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 5 5 5 5 5 5 5 5 5 5 0 5 231010000 3997900 2828900 2417600 19820000 8206500 2881800 47978000 35612000 29829000 9265500 14982000 36118000 8778600 0 8297900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 1 1 0 1 7 AAFPNLNSDAGLK 24 5 True 5 74;75;76;77;78;79;80;81;82;83;84;85;86;87 66;67;68;69;70;71;72 72 -1;-1 A8MRV0;Q9FFS8 A8MRV0;Q9FFS8 1;1 1;1 1;1 40S ribosomal protein S10-2 At5g41520;RPS10B tr|A8MRV0|A8MRV0_ARATH RNA binding Plectin/S10 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=1 SV=1;sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1 2 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 20.1 20.1 20.1 14.353 134 134;180 0 24.818 By MS/MS By MS/MS By matching 0 0 0 0 0 0 20.1 20.1 20.1 0 0 0 0 0 0 32265000 0 0 0 0 0 0 14226000 10401000 7638000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 SGGEYGDKAGAPADYQPGFRGGAGGAR 25 351 True 362 4326;4327;4328 2200;2201 2200 -1;-1 A8MS28;Q8LCL3;P51419 A8MS28;Q8LCL3;P51419 2;2;2 2;2;2 2;2;2 60S ribosomal protein L27-2;60S ribosomal protein L27-3 At4g15000;RPL27B;RPL27C tr|A8MS28|A8MS28_ARATH Ribosomal L27e protein family OS=Arabidopsis thaliana OX=3702 GN=At4g15000 PE=1 SV=1;sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2;sp|P51419|RL273_ARATH 60S ribosomal protein L2 3 2 2 2 1 0 0 2 0 0 1 1 1 0 0 1 1 1 1 1 0 0 2 0 0 1 1 1 0 0 1 1 1 1 1 0 0 2 0 0 1 1 1 0 0 1 1 1 1 12.2 12.2 12.2 15.035 131 131;135;135 0 11.709 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 8.4 0 0 12.2 0 0 8.4 8.4 8.4 0 0 9.9 9.9 9.9 9.9 31550000 508330 0 0 1646100 0 0 6469000 3382200 3385800 0 0 2853800 5609100 4785100 2910000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 2 AVILLQGRYAGKK;QNKAVILLQGR 26 93;328 True;True 96;339 1079;1080;1081;1082;1083;4106;4107;4108;4109;4110 604;2092 604;2092 -1;-1;-1 A8MS37;B3H4B8;Q9LRR9;Q2V3V9;F4JFV6;Q9LRS0 A8MS37;B3H4B8;Q9LRR9;Q2V3V9;F4JFV6;Q9LRS0 3;3;3;2;2;2 3;3;3;2;2;2 3;3;3;2;2;2 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1;Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 At3g14420;GLO1;At3g14415;GLO2 tr|A8MS37|A8MS37_ARATH (S)-2-hydroxy-acid oxidase OS=Arabidopsis thaliana OX=3702 GN=GOX1 PE=1 SV=1;tr|B3H4B8|B3H4B8_ARATH (S)-2-hydroxy-acid oxidase OS=Arabidopsis thaliana OX=3702 GN=GOX1 PE=1 SV=1;sp|Q9LRR9|GLO1_ARATH Glycolate oxidase 1 OS=Arabidopsis 6 3 3 3 1 2 1 2 0 1 2 2 1 0 1 2 1 0 1 1 2 1 2 0 1 2 2 1 0 1 2 1 0 1 1 2 1 2 0 1 2 2 1 0 1 2 1 0 1 11.9 11.9 11.9 39.462 360 360;366;367;367;373;367 0 35.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 3.9 8.9 3.9 8.9 0 5 8.9 8.9 3.9 0 5 8.1 5 0 5 82846000 1859100 6268000 3181600 5518000 0 1849000 19284000 9987400 5660100 0 5422400 15418000 4154700 0 4243200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 3 AGFKAIALTVDTPR;IAIQAGAAGIIVSNHGAR;IDMTTTVLGFK 27 31;203;205 True;True;True 31;210;212 393;394;395;396;397;398;399;2529;2530;2531;2532;2533;2534;2535;2536;2537;2545 196;1275;1278 196;1275;1278 2 53 -1;-1;-1;-1;-1;-1 A8MSE0;Q944S8 A8MSE0;Q944S8 1;1 1;1 1;1 At4g21105 tr|A8MSE0|A8MSE0_ARATH Cytochrome-c oxidase/ electron carrier OS=Arabidopsis thaliana OX=3702 GN=At4g21105 PE=1 SV=1;tr|Q944S8|Q944S8_ARATH At4g21108/At4g21108 OS=Arabidopsis thaliana OX=3702 GN=At4g21105 PE=1 SV=1 2 1 1 1 1 1 1 0 0 0 1 1 0 0 1 1 0 1 0 1 1 1 0 0 0 1 1 0 0 1 1 0 1 0 1 1 1 0 0 0 1 1 0 0 1 1 0 1 0 20.8 20.8 20.8 5.7047 48 48;68 1 -2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20.8 20.8 20.8 0 0 0 20.8 20.8 0 0 20.8 20.8 0 20.8 0 95860000 1345800 1245700 1635600 0 0 0 29957000 23350000 0 0 12692000 23317000 0 2318200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 MLTETPFRPR + 28 299 True 309 3597;3598;3599;3600;3601;3602;3603;3604 1793;1794 1793 3 1 -1;-1 B3H4Y9;O23138 B3H4Y9;O23138 3;3 3;3 2;2 Cytochrome c-1 CYTC-1 tr|B3H4Y9|B3H4Y9_ARATH CYTOCHROME C-1 OS=Arabidopsis thaliana OX=3702 GN=CYTC-1 PE=1 SV=1;sp|O23138|CYC1_ARATH Cytochrome c-1 OS=Arabidopsis thaliana OX=3702 GN=CYTC-1 PE=1 SV=1 2 3 3 2 1 1 2 2 2 2 3 3 3 2 3 3 2 3 2 1 1 2 2 2 2 3 3 3 2 3 3 2 3 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 26.5 26.5 15.7 11.114 102 102;114 0 86.141 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11.8 15.7 15.7 15.7 15.7 15.7 26.5 26.5 26.5 15.7 26.5 26.5 15.7 26.5 15.7 1222500000 5202200 5920600 13044000 43352000 47004000 52281000 130020000 134420000 93188000 82165000 118160000 278720000 101410000 39300000 78342000 0 0 6825700 15565000 20082000 37623000 14566000 19087000 15463000 30597000 28069000 31273000 26551000 26894000 24978000 0 1 1 3 3 2 4 4 2 4 3 3 3 3 3 39 ASFDEAPPGNAK;ASFDEAPPGNAKAGEK;QGPNLNGLFGR 29 60;61;322 True;True;True 63;64;333 679;680;681;682;683;684;685;686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;4072;4073;4074;4075;4076;4077 321;322;323;324;325;326;327;328;329;330;331;332;333;334;335;336;337;338;339;340;341;342;343;344;345;346;347;348;349;350;351;352;353;354;355;356;357;358;359;2075 325;354;2075 -1;-1 B9DG17;Q08682 B9DG17;Q08682 1;1 1;1 1;1 40S ribosomal protein SA;40S ribosomal protein Sa-1 P40;RPSaA tr|B9DG17|B9DG17_ARATH 40S ribosomal protein SA OS=Arabidopsis thaliana OX=3702 GN=P40 PE=1 SV=1;sp|Q08682|RSSA1_ARATH 40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3 2 1 1 1 1 1 0 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 1 1 0 0 0 0 0 0 6.5 6.5 6.5 31.981 294 294;298 0 86.727 By matching By matching By matching By MS/MS By MS/MS By MS/MS 6.5 6.5 0 6.5 0 0 6.5 6.5 6.5 0 0 0 0 0 0 29212000 1441700 2425200 0 1433100 0 0 10744000 5803100 7364800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 3 ATNGSASSAQLSQKEADVR 30 85 True 88 950;951;952;953;954;955 509;510;511 509 -1;-1 C0SUW8 C0SUW8 1 1 1 At1g21160 tr|C0SUW8|C0SUW8_ARATH Eukaryotic translation initiation factor 5B (Fragment) OS=Arabidopsis thaliana OX=3702 GN=At1g21160 PE=1 SV=1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 1 0 1 1 1 0 0 0 1 1 1 0 0 0 0 1 0 1 1 1 0 0 0 1 1 1 0 0 0 0 1 0 1.1 1.1 1.1 121.12 1092 1092 0 9.2765 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1.1 1.1 1.1 0 0 0 1.1 1.1 1.1 0 0 0 0 1.1 0 112000000 6056900 4897500 4007400 0 0 0 48219000 20015000 27958000 0 0 0 0 843090 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 VTGTYMPHREVK 31 470 True 484 5774;5775;5776;5777;5778;5779;5780 2971 2971 4 784 -1 CON__P00761 CON__P00761 3 3 3 1 3 3 3 3 3 3 3 3 3 3 3 2 2 2 3 2 2 2 3 3 3 3 3 3 3 3 2 2 2 3 2 2 2 3 3 3 3 3 3 3 3 2 2 2 3 2 2 2 16.5 16.5 16.5 24.409 231 231 0 41.837 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16.5 16.5 16.5 16.5 16.5 16.5 16.5 16.5 7.8 7.8 7.8 16.5 7.8 7.8 7.8 1728100000 121320000 117350000 208260000 117510000 59718000 8872700 342540000 210940000 142350000 22377000 40369000 204750000 37472000 20839000 73410000 88875000 69876000 99282000 26342000 23390000 19448000 55677000 40445000 23900000 9588000 9016400 43879000 10670000 15214000 24250000 8 5 4 4 3 1 2 4 3 3 2 4 2 1 2 48 LGEHNIDVLEGNEQFINAAK;LSSPATLNSR;VATVSLPR + 32 271;289;428 True;True;True 279;297;442 3231;3232;3233;3234;3235;3236;3237;3238;3239;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471;5339;5340;5341;5342;5343;5344;5345;5346;5347;5348;5349;5350;5351;5352;5353 1615;1616;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;2766;2767;2768;2769;2770;2771 1616;1736;2766 -1 CON__P34955 CON__P34955 2 2 2 1 2 2 2 1 0 1 2 2 2 2 2 2 2 2 0 0 2 0 1 0 1 2 2 2 2 2 2 2 2 0 0 2 0 1 0 1 2 2 2 2 2 2 2 2 0 0 2 0 9.6 9.6 9.6 46.103 416 416 0 11.928 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4.1 0 4.1 9.6 9.6 9.6 9.6 9.6 9.6 9.6 9.6 0 0 9.6 0 66552000 7064200 0 2367200 5685100 3877400 4388300 5050900 4470000 5079700 17889000 7735700 0 0 2944600 0 0 0 0 0 0 0 0 453030 0 4771100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 2 SVLGDVGITEVFSDRADLSGITK;VLDPNTVFALVNYISFK + 33 379;455 True;True 391;469 4647;4648;4649;4650;4651;4652;4653;4654;4655;5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646 2362;2905 2362;2905 -1 F4HQT1;Q9FX54;P25858 F4HQT1;Q9FX54;P25858 3;3;3 3;3;3 3;3;3 Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic;Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic GAPC2;GAPC1 tr|F4HQT1|F4HQT1_ARATH Glyceraldehyde-3-phosphate dehydrogenase C2 OS=Arabidopsis thaliana OX=3702 GN=GAPC2 PE=1 SV=1;sp|Q9FX54|G3PC2_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic OS=Arabidopsis thaliana OX=3702 GN=GAPC2 PE=1 SV=1;sp|P258 3 3 3 3 2 2 2 1 1 1 3 3 2 1 2 1 2 2 1 2 2 2 1 1 1 3 3 2 1 2 1 2 2 1 2 2 2 1 1 1 3 3 2 1 2 1 2 2 1 4.2 4.2 4.2 33.905 310 310;338;338 0 21.173 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3.2 3.2 3.2 2.6 2.6 3.5 4.2 4.2 4.2 3.5 3.5 2.6 3.5 3.5 2.6 371950000 19416000 23122000 32562000 24985000 4881600 1218300 95045000 43737000 12950000 3078300 23012000 27726000 26016000 9024700 25179000 16470000 19183000 15099000 0 0 0 12896000 8285800 0 0 0 0 14380000 0 0 2 1 1 0 0 0 1 1 1 0 0 0 1 0 0 8 IGINGFGR;IGINGFGRIGR;IRIGINGFGR 34 214;215;232 True;True;True 221;222;240 2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2812;2813;2814;2815;2816;2817 1311;1312;1313;1314;1315;1316;1415;1416 1314;1316;1415 -1;-1;-1 F4HRW5;P51413 F4HRW5;P51413 1;1 1;1 1;1 60S ribosomal protein L17-2 At1g67430;RPL17B tr|F4HRW5|F4HRW5_ARATH Ribosomal protein L22p/L17e family protein OS=Arabidopsis thaliana OX=3702 GN=At1g67430 PE=1 SV=1;sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2 2 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 9.2 9.2 9.2 14.767 131 131;175 0 12.242 By MS/MS 0 0 0 0 0 0 9.2 0 0 0 0 0 0 0 0 10733000 0 0 0 0 0 0 10733000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 VKYSQEPDNQTK 35 453 True 467 5621 2902 2902 -1;-1 F4HUA0;Q8W4H7;Q8GTY0;Q0WL56;P0DH99 F4HUA0;Q8W4H7;Q8GTY0;Q0WL56;P0DH99 3;3;3;3;3 3;3;3;3;3 3;3;3;3;3 Elongation factor 1-alpha 2;Elongation factor 1-alpha 4;Elongation factor 1-alpha 3;Elongation factor 1-alpha 1 At1g07930;A2;A4;A3;A1 tr|F4HUA0|F4HUA0_ARATH GTP binding Elongation factor Tu family protein OS=Arabidopsis thaliana OX=3702 GN=At1g07930 PE=1 SV=1;sp|Q8W4H7|EF1A2_ARATH Elongation factor 1-alpha 2 OS=Arabidopsis thaliana OX=3702 GN=A2 PE=1 SV=2;sp|Q8GTY0|EF1A4_ARATH Elongation 5 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 3 3 3 6.2 6.2 6.2 41.374 372 372;449;449;449;449 0 22.575 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.2 6.2 6.2 6.2 6.2 6.2 3.2 3.2 3.2 6.2 6.2 6.2 6.2 6.2 6.2 608360000 12206000 14265000 13133000 52509000 18210000 13060000 19071000 36570000 28594000 72337000 64818000 143450000 38557000 16994000 64591000 4966200 5265800 4530000 6178300 0 0 0 4717900 3162800 16779000 6499300 12935000 0 6960000 16400000 0 0 0 0 0 0 0 0 1 1 0 2 0 0 2 6 DMRQTVAVGVIK;IGGIGTVPVGR;QTVAVGVIK 36 116;213;329 True;True;True 120;121;220;340 1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638;4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125 780;781;782;783;1307;1308;1309;1310;2093;2094 782;1308;2094 5 340 -1;-1;-1;-1;-1 F4I3L1;P50318 F4I3L1;P50318 2;2 2;2 1;1 Phosphoglycerate kinase;Phosphoglycerate kinase 2, chloroplastic At1g56190 tr|F4I3L1|F4I3L1_ARATH Phosphoglycerate kinase OS=Arabidopsis thaliana OX=3702 GN=At1g56190 PE=1 SV=1;sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g56190 PE=1 SV=3 2 2 2 1 2 2 2 1 1 1 2 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 6.7 6.7 4.4 42.615 405 405;478 0 29.726 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.7 6.7 6.7 2.2 2.2 2.2 6.7 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 111950000 14212000 15434000 16733000 5643900 2531300 1641700 14378000 8065600 5708900 2912700 4124700 8452500 5195000 3299600 3618200 9559800 9917700 9000100 0 0 0 1593100 0 0 0 0 0 0 0 0 2 1 2 0 0 0 1 0 0 0 1 1 0 0 0 8 FSLAPLVPR;KGVTTIIGGGDSVAAVEK 37 167;251 True;True 173;259 2073;2074;2075;2076;2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088;2089;3008;3009;3010;3011 1104;1105;1106;1107;1108;1109;1110;1111;1504;1505;1506 1111;1506 -1;-1 F4I420 F4I420 1 1 1 At1g76810 tr|F4I420|F4I420_ARATH Eukaryotic translation initiation factor 5B OS=Arabidopsis thaliana OX=3702 GN=At1g76810 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1.2 1.2 1.2 142.11 1294 1294 0 20.797 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 0 1.2 68642000 2083200 3114200 4201000 4662500 3236700 2090400 7576500 7596400 4914800 3582700 4996600 12001000 3623500 0 4962600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2 AAQPEPVAPVENAGEK 38 9 True 9 111;112;113;114;115;116;117;118;119;120;121;122;123;124 82;83 83 -1 F4I472;Q08112;Q9FY64 F4I472;Q08112;Q9FY64 2;2;1 2;2;1 2;2;1 40S ribosomal protein S15-1;40S ribosomal protein S15-4 RPS15;RPS15A;RPS15D tr|F4I472|F4I472_ARATH Cytosolic ribosomal protein S15 OS=Arabidopsis thaliana OX=3702 GN=RPS15 PE=1 SV=1;sp|Q08112|RS151_ARATH 40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1;sp|Q9FY64|RS154_ARATH 40S ribosomal protein S15- 3 2 2 2 1 1 1 0 1 0 1 2 2 0 0 0 0 2 0 1 1 1 0 1 0 1 2 2 0 0 0 0 2 0 1 1 1 0 1 0 1 2 2 0 0 0 0 2 0 21.2 21.2 21.2 17.058 151 151;152;152 0 31.533 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 10.6 10.6 10.6 0 10.6 0 10.6 21.2 21.2 0 0 0 0 21.2 0 288050000 6046500 6665500 10322000 0 6838700 0 48653000 94713000 100250000 0 0 0 0 14566000 0 0 0 0 0 0 0 6403100 8369800 9810300 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 1 0 5 ADVEPEVAAAGVPKKR;EAPQGEKPEPVRTHLR 39 15;129 True;True 15;134 173;174;175;176;1568;1569;1570;1571;1572;1573;1574;1575;1576 104;105;106;908;909 106;908 -1;-1;-1 F4I7X1 F4I7X1 1 1 1 SKS6 tr|F4I7X1|F4I7X1_ARATH SKU5-similar 6 OS=Arabidopsis thaliana OX=3702 GN=SKS6 PE=1 SV=1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 3 3 3 60.577 542 542 0 59.318 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 3 3 0 3 3 3 0 3 3 3 3 3 3 0 3 98929000 2340100 1848500 0 7722500 3364800 5571800 0 4429500 5462100 8482200 9747500 37781000 6415300 0 5764000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 5 TIVFGSSAGQINGKQR 40 402 True 415 5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058 2631;2632;2633;2634;2635 2633 -1 F4I9Q5 F4I9Q5 1 1 1 At1g58060 sp|F4I9Q5|DEXH7_ARATH DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g58060 PE=2 SV=1 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0.6 0.6 0.6 163.6 1459 1459 0 7.3737 By MS/MS By MS/MS By MS/MS 0 0 0 0 0 0 0.6 0.6 0.6 0 0 0 0 0 0 240630000 0 0 0 0 0 0 94576000 80338000 65715000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 IAAISVAQR 41 202 True 209 2526;2527;2528 1273;1274 1274 -1 F4IGL5;Q944G9;Q9SJU4 F4IGL5;Q944G9;Q9SJU4 2;2;2 2;2;2 2;2;2 Fructose-bisphosphate aldolase;Probable fructose-bisphosphate aldolase 2, chloroplastic;Probable fructose-bisphosphate aldolase 1, chloroplastic FBA1;FBA2 tr|F4IGL5|F4IGL5_ARATH Fructose-bisphosphate aldolase OS=Arabidopsis thaliana OX=3702 GN=FBA1 PE=1 SV=1;sp|Q944G9|ALFP2_ARATH Fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FBA2 PE=1 SV=2;sp|Q9SJU4|ALFP1_ARATH Fructose-b 3 2 2 2 2 2 2 2 0 0 2 2 2 0 0 1 0 0 0 2 2 2 2 0 0 2 2 2 0 0 1 0 0 0 2 2 2 2 0 0 2 2 2 0 0 1 0 0 0 5.7 5.7 5.7 41.807 389 389;398;399 0 82.958 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5.7 5.7 5.7 5.7 0 0 5.7 5.7 5.7 0 0 5.7 0 0 0 330230000 30449000 30274000 63142000 18988000 0 0 79777000 47891000 51138000 0 0 8571700 0 0 0 11459000 12485000 17550000 4266100 0 0 5756300 4269100 5085800 0 0 0 0 0 0 1 3 3 0 0 0 2 2 2 0 0 0 0 0 0 13 AKANSLAQLGKYTGEGESEEAK;ANSLAQLGKYTGEGESEEAK 42 42;54 True;True 42;57 462;463;464;465;466;467;468;469;470;471;472;473;474;475;476;626;627;628;629;630;631;632 231;232;233;234;235;236;237;238;239;240;241;300;301;302 236;300 -1;-1;-1 F4JVC0;F4JVB9;F4JVC1;F4IHK9;Q03251;Q03250 F4JVC0;F4JVB9;F4JVC1;F4IHK9;Q03251;Q03250 1;1;1;1;1;1 1;1;1;1;1;1 1;1;1;1;1;1 Glycine-rich RNA-binding protein 8;Glycine-rich RNA-binding protein 7 CCR1;CCR2;RBG8;RBG7 tr|F4JVC0|F4JVC0_ARATH Cold, circadian rhythm, and RNA binding 1 OS=Arabidopsis thaliana OX=3702 GN=CCR1 PE=1 SV=1;tr|F4JVB9|F4JVB9_ARATH Cold, circadian rhythm, and RNA binding 1 OS=Arabidopsis thaliana OX=3702 GN=CCR1 PE=1 SV=1;tr|F4JVC1|F4JVC1_ARATH Col 6 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 12 12 12 10.23 92 92;105;126;159;169;176 0.0045872 6.0449 By MS/MS By MS/MS By MS/MS By MS/MS By matching 12 12 12 0 0 0 12 12 0 0 0 0 0 0 0 28349000 5690400 5147000 7719400 0 0 0 4622000 5169900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 GFGFVTFKDEK 43 177 True 183 2226;2227;2228;2229;2230 1169;1170 1169 -1;-1;-1;-1;-1;-1 F4III4;Q9SJ12 F4III4;Q9SJ12 2;2 2;2 2;2 Probable ATP synthase 24 kDa subunit, mitochondrial MGP1 tr|F4III4|F4III4_ARATH MALE GAMETOPHYTE DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=MGP1 PE=1 SV=1;sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21870 PE=1 SV=1 2 2 2 2 1 1 1 2 1 1 2 2 2 2 2 2 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 1 1 2 8.6 8.6 8.6 25.16 220 220;240 0 41.971 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 8.6 8.6 8.6 8.6 5.5 5.5 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 245400000 2528900 4740600 6890600 10396000 3928200 2734300 47033000 40362000 36868000 10184000 19983000 31194000 12178000 6281000 10099000 0 0 0 4572200 0 0 4897500 5050000 4992800 4472700 5347300 4623900 0 0 4032200 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 3 ITLDPEDPAAVK;ITLDPEDPAAVKQYANVMK 44 237;238 True;True 245;246 2857;2858;2859;2860;2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879 1422;1423;1424;1425;1426 1422;1426 6 87 -1;-1 F4IJM1;Q8LBP4 F4IJM1;Q8LBP4 1;1 1;1 1;1 Inner membrane protein ALBINO3, chloroplastic ALB3 tr|F4IJM1|F4IJM1_ARATH 63 kDa inner membrane family protein OS=Arabidopsis thaliana OX=3702 GN=ALB3 PE=1 SV=1;sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALB3 PE=1 SV=2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 4.4 4.4 4.4 47.071 432 432;462 0 75.401 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 0 4.4 132980000 6437900 4178300 7177000 8765800 9130600 7988200 14335000 14362000 13191000 7743800 10147000 18351000 5494800 0 5681300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 11 EGALASSTTSKPLPEVGQR 45 137 True 142 1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701 959;960;961;962;963;964;965;966;967;968;969 967 -1;-1 F4IT48;P60039;Q9LHP1 F4IT48;P60039;Q9LHP1 1;1;1 1;1;1 1;1;1 60S ribosomal protein L7-3;60S ribosomal protein L7-4 At2g44120;RPL7C;RPL7D tr|F4IT48|F4IT48_ARATH Ribosomal protein L30/L7 family protein OS=Arabidopsis thaliana OX=3702 GN=At2g44120 PE=1 SV=1;sp|P60039|RL73_ARATH 60S ribosomal protein L7-3 OS=Arabidopsis thaliana OX=3702 GN=RPL7C PE=2 SV=1;sp|Q9LHP1|RL74_ARATH 60S ribosomal prot 3 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 5.7 5.7 5.7 28.519 247 247;242;244 0.0044843 5.9856 By MS/MS 0 0 0 0 0 0 5.7 0 0 0 0 0 0 0 0 3227400 0 0 0 0 0 0 3227400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RVEPYVTYGYPNLK 46 342 True 353 4265 2167 2167 -1;-1;-1 F4IVZ7;P10896 F4IVZ7;P10896 3;3 3;3 3;3 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic RCA tr|F4IVZ7|F4IVZ7_ARATH Rubisco activase OS=Arabidopsis thaliana OX=3702 GN=RCA PE=1 SV=1;sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RCA PE=1 SV=2 2 3 3 3 1 2 1 2 0 0 2 3 2 0 1 1 1 1 1 1 2 1 2 0 0 2 3 2 0 1 1 1 1 1 1 2 1 2 0 0 2 3 2 0 1 1 1 1 1 7.5 7.5 7.5 48.5 441 441;474 0 20.325 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4.1 2 4.1 0 0 5.4 7.5 5.4 0 2 2 2 2 2 157540000 8130700 12453000 4019900 26267000 0 0 26048000 29611000 17489000 0 7651800 10816000 6342900 2497400 6211400 0 0 0 0 0 0 3159800 2133000 2310100 0 0 0 0 0 0 1 1 0 1 0 0 1 1 1 0 0 0 1 0 1 8 ARVYDDEVR;EGPPVFEQPEMTYEK;FVESLGVEK 47 59;143;170 True;True;True 62;148;176 675;676;677;678;1796;1797;1798;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122 320;996;1116;1117;1118;1119;1120;1121 320;996;1120 7 388 -1;-1 F4IZR4;Q9M9M9 F4IZR4;Q9M9M9 1;1 1;1 1;1 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 At3g03100 tr|F4IZR4|F4IZR4_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana OX=3702 GN=At3g03100 PE=1 SV=1;sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana 2 1 1 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 8.2 8.2 8.2 18.291 159 159;159 0 19.052 By matching By MS/MS By MS/MS 0 8.2 0 0 0 0 8.2 0 8.2 0 0 0 0 0 0 5799800 0 549270 0 0 0 0 3166800 0 2083700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 ALTVAKSALEAIR 48 51 True 53 594;595;596 292;293 292 -1;-1 F4J0F5;Q9LK19;REV__B3H5A6;REV__Q8RWB8 F4J0F5;Q9LK19;REV__B3H5A6;REV__Q8RWB8 1;1;1;1 1;1;1;1 1;1;1;1 At3g28870;At3g24260 tr|F4J0F5|F4J0F5_ARATH Paired amphipathic helix SIN3-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g28870 PE=4 SV=1;tr|Q9LK19|Q9LK19_ARATH Paired amphipathic helix Sin3-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g24260 PE=4 SV=1;tr|B3H5A6|B3H5 4 1 1 1 0 1 1 1 1 0 1 1 1 1 0 0 0 0 1 0 1 1 1 1 0 1 1 1 1 0 0 0 0 1 0 1 1 1 1 0 1 1 1 1 0 0 0 0 1 1.7 1.7 1.7 40.902 355 355;374;1015;1029 0 58.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 1.7 1.7 1.7 1.7 0 1.7 1.7 1.7 1.7 0 0 0 0 1.7 150060000 0 4224300 13311000 10631000 5889600 0 46814000 27891000 26847000 4922400 0 0 0 0 9525700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LTELLK 49 290 True 298 3472;3473;3474;3475;3476;3477;3478;3479;3480 1738 1738 -1;-1;-1;-1 F4J1N5 F4J1N5 1 1 1 Eukaryotic translation initiation factor 3 subunit C TIF3C2 tr|F4J1N5|F4J1N5_ARATH Eukaryotic translation initiation factor 3 subunit C OS=Arabidopsis thaliana OX=3702 GN=TIF3C2 PE=1 SV=1 1 1 1 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 1 1.1 1.1 1.1 91.707 805 805 0.0046296 6.0489 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 1.1 1.1 0 0 0 1.1 1.1 0 0 0 0 0 1.1 170140000 0 0 11715000 23970000 0 0 0 60839000 67434000 0 0 0 0 0 6187100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 PAAYDGTIR 50 315 True 326 4016;4017;4018;4019;4020 2053 2053 -1 F4J296;Q9LY66 F4J296;Q9LY66 1;1 1;1 1;1 Ribosomal protein;50S ribosomal protein L1, chloroplastic At3g63490;RPL1 tr|F4J296|F4J296_ARATH Ribosomal protein OS=Arabidopsis thaliana OX=3702 GN=EMB3126 PE=1 SV=1;sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1 2 1 1 1 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 3.8 3.8 3.8 31.646 291 291;346 0.0046729 6.0637 By MS/MS By matching By matching By matching By matching By matching By MS/MS 0 0 0 3.8 0 3.8 3.8 0 3.8 3.8 3.8 3.8 0 0 0 22475000 0 0 0 2313200 0 1593200 3139700 0 2278300 3229200 3516600 6404500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 VAGLGKILGPR 51 421 True 434 5235;5236;5237;5238;5239;5240;5241 2707 2707 -1;-1 F4J405 F4J405 1 1 1 At3g17140 tr|F4J405|F4J405_ARATH Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN=At3g17140 PE=4 SV=1 1 1 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 1 17.9 17.9 17.9 11.987 112 112 0 6.3283 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 17.9 17.9 17.9 0 0 0 0 17.9 17.9 0 0 0 0 0 17.9 168830000 34265000 30307000 34308000 0 0 0 0 52801000 6773900 0 0 0 0 0 10377000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 GQSPLTSLTQRMEKICDVTR 52 196 True 203 2425;2426;2427;2428;2429;2430 1226 1226 -1 F4J912;Q8LBI1;P49227 F4J912;Q8LBI1;P49227 2;2;2 2;2;2 2;2;2 60S ribosomal protein L5-1;60S ribosomal protein L5-2 ATL5;RPL5B tr|F4J912|F4J912_ARATH Ribosomal protein L5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=1 SV=1;sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis thaliana OX=3702 GN=RPL5A PE=1 SV=2;sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 12.6 12.6 12.6 21.545 190 190;301;301 0 13.795 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7.9 12.6 12.6 12.6 12.6 12.6 12.6 12.6 12.6 12.6 12.6 12.6 12.6 12.6 12.6 652930000 4123900 8713600 12587000 17761000 13838000 8113400 163080000 77319000 87177000 25949000 32498000 57512000 69023000 26399000 48833000 4058200 3861800 3922300 4153300 3939400 3818700 10310000 9904100 10386000 5721800 4911700 4377600 10132000 9264500 12544000 0 1 0 0 0 0 2 2 2 1 0 0 1 0 2 11 GALDGGLDIPHSDKR;LLGEDEPEK 53 174;282 True;True 180;290 2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391 1157;1158;1159;1160;1161;1162;1163;1164;1165;1682;1683;1684;1685 1164;1685 -1;-1;-1 F4JBY2;Q8RWV0 F4JBY2;Q8RWV0 3;3 3;3 3;3 Transketolase-1, chloroplastic At3g60750;TKL-1 tr|F4JBY2|F4JBY2_ARATH Transketolase OS=Arabidopsis thaliana OX=3702 GN=AtTKL1 PE=1 SV=1;sp|Q8RWV0|TKTC1_ARATH Transketolase-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TKL-1 PE=1 SV=1 2 3 3 3 2 3 3 0 0 0 2 2 2 0 0 0 1 2 1 2 3 3 0 0 0 2 2 2 0 0 0 1 2 1 2 3 3 0 0 0 2 2 2 0 0 0 1 2 1 4.3 4.3 4.3 79.838 740 740;741 0 39.775 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2.2 4.3 4.3 0 0 0 2.2 4.3 2.2 0 0 0 1.8 2.2 1.8 104330000 4961500 8513600 16175000 0 0 0 25535000 18586000 12839000 0 0 0 6544300 6431400 4740700 3123000 3386900 4655600 0 0 0 2418300 1753400 2405800 0 0 0 0 3359600 0 0 0 1 0 0 0 2 1 0 0 0 0 0 1 0 5 AFGDFQKATPEER;AFGDFQKATPEERNLR;FAAYEKKYPEEASELK 54 24;25;157 True;True;True 24;25;162 286;287;288;289;290;291;292;293;294;295;296;297;298;299;300;1984;1985;1986 158;159;160;161;1073 158;161;1073 -1;-1 F4JD96;Q9SVR0;Q9SFU1 F4JD96;Q9SVR0;Q9SFU1 2;2;2 2;2;2 2;2;2 60S ribosomal protein L13a-3;60S ribosomal protein L13a-1 At3g07110;RPL13AC;RPL13AA tr|F4JD96|F4JD96_ARATH Ribosomal protein L13 family protein OS=Arabidopsis thaliana OX=3702 GN=At3g07110 PE=1 SV=1;sp|Q9SVR0|R13A3_ARATH 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13AC PE=2 SV=1;sp|Q9SFU1|R13A1_ARATH 60S ribosomal p 3 2 2 2 1 1 1 1 1 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 1 1 6.3 6.3 6.3 23.594 207 207;206;206 0 42.519 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.3 6.3 6.3 6.3 6.3 0 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 222660000 2399600 4328500 10243000 9960700 3020700 0 90420000 39116000 31954000 4622200 5740000 9618500 4185700 2353600 4698300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 LGSQLDVLAPVK;LGSQLDVLAPVKY 55 275;276 True;True 283;284 3285;3286;3287;3288;3289;3290;3291;3292;3293;3294;3295;3296;3297;3298;3299;3300 1633;1634;1635;1636;1637;1638 1633;1635 -1;-1;-1 F4JM05;Q8W0Y8 F4JM05;Q8W0Y8 1;1 1;1 1;1 Photosystem II reaction center Psb28 protein;Photosystem II reaction center PSB28 protein, chloroplastic PSB28 tr|F4JM05|F4JM05_ARATH Photosystem II reaction center Psb28 protein OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=1 SV=1;sp|Q8W0Y8|PSB28_ARATH Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.6 6.6 6.6 21.943 198 198;183 0 25.277 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 1533000000 67690000 95345000 159440000 56480000 35035000 6358700 239170000 160060000 168590000 48155000 85220000 155700000 108050000 45361000 102340000 49470000 61611000 68967000 30008000 24755000 0 34194000 36483000 33098000 27710000 34569000 26919000 41343000 47937000 45691000 0 0 0 0 0 0 2 1 1 1 1 2 1 1 1 11 YSDQNGLQFVKKQ 56 483 True 497 5866;5867;5868;5869;5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894 3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017;3018;3019 3016 -1;-1 F4JQE9 F4JQE9 1 1 1 At4g36580 tr|F4JQE9|F4JQE9_ARATH AAA-type ATPase family protein OS=Arabidopsis thaliana OX=3702 GN=AP22.32 PE=1 SV=1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 0 0 0 1 1 1 1 1 0 1 0 0 1 1 1 0 0 0 1 1 1 1 1 0 1 0 0 1 1 1 0 0 0 3.3 3.3 3.3 71.007 632 632 0.0046512 6.0623 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3.3 3.3 3.3 3.3 3.3 0 3.3 0 0 3.3 3.3 3.3 0 0 0 177150000 3411700 3171500 9253600 11012000 9105000 0 92113000 0 0 6737000 12774000 29574000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 LAEDQRNLLQTQAQTKAQNLR 57 253 True 261 3021;3022;3023;3024;3025;3026;3027;3028;3029 1510 1510 -1 F4JT64;Q940J8 F4JT64;Q940J8 1;1 1;1 1;1 Pectin acetylesterase 7 At4g19410;PAE7 tr|F4JT64|F4JT64_ARATH Pectin acetylesterase OS=Arabidopsis thaliana OX=3702 GN=PAE7 PE=1 SV=1;sp|Q940J8|PAE7_ARATH Pectin acetylesterase 7 OS=Arabidopsis thaliana OX=3702 GN=PAE7 PE=2 SV=1 2 1 1 1 1 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1.7 1.7 1.7 55.832 517 517;391 0 10.357 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1.7 1.7 1.7 0 0 0 1.7 0 1.7 1.7 1.7 0 0 0 0 65435000 3645100 2861400 1358500 0 0 0 7269300 0 5584100 20228000 24489000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 4 AVGNWFYGR 58 92 True 95 1072;1073;1074;1075;1076;1077;1078 600;601;602;603 603 -1;-1 F4K5B9 F4K5B9 1 1 1 At5g07030 tr|F4K5B9|F4K5B9_ARATH Eukaryotic aspartyl protease family protein OS=Arabidopsis thaliana OX=3702 GN=MOJ9.20 PE=1 SV=1 1 1 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 3.7 3.7 3.7 48.694 455 455 0 6.8659 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3.7 3.7 3.7 3.7 0 0 3.7 3.7 3.7 0 0 0 0 0 0 97944000 4354700 7430900 12010000 4728400 0 0 30797000 22404000 16218000 0 0 0 0 0 0 3198500 5406300 4510500 2795100 0 0 3595300 3915100 2735200 0 0 0 0 0 0 1 1 1 0 0 0 1 3 1 0 0 0 0 0 0 8 LGPTSQPQRVKYTQLLR 59 274 True 282 3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284 1625;1626;1627;1628;1629;1630;1631;1632 1627 -1 F4KA76 F4KA76 1 1 1 Ribulose bisphosphate carboxylase small chain At5g38410 tr|F4KA76|F4KA76_ARATH Ribulose bisphosphate carboxylase small subunit OS=Arabidopsis thaliana OX=3702 GN=RBCS3B PE=1 SV=1 1 1 1 1 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 12.1 12.1 12.1 19.395 174 174 0 6.1813 By MS/MS By matching By MS/MS By matching By MS/MS 0 12.1 0 0 0 0 12.1 12.1 12.1 0 0 0 0 12.1 0 37090000 0 3840400 0 0 0 0 9419900 11103000 7809200 0 0 0 0 4917800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 2 WIPCVEFELEHGNTPGYYDGR 60 476 True 490 5830;5831;5832;5833;5834 2994;2995 2995 -1 F4KC80;P49107 F4KC80;P49107 2;2 2;2 2;2 Photosystem I reaction center subunit N, chloroplastic PSAN tr|F4KC80|F4KC80_ARATH Photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) OS=Arabidopsis thaliana OX=3702 GN=PSAN PE=1 SV=1;sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 6.1 6.1 6.1 19.347 181 181;171 0 116.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 1455300000 30814000 51223000 83157000 101710000 59272000 57327000 173420000 135630000 86771000 53320000 120820000 346370000 46827000 3222600 105430000 17717000 24675000 41443000 18199000 0 51816000 13871000 20894000 12260000 23843000 37310000 41147000 16777000 0 41106000 3 3 2 4 3 3 3 1 3 0 3 3 1 1 3 36 LATSGANFAR;RLATSGANFAR 61 264;335 True;True 272;346 3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161;4157;4158;4159;4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177;4178;4179;4180;4181;4182;4183;4184;4185;4186;4187;4188 1574;1575;1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;2108;2109;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122;2123 1574;2118 -1;-1 F4KCF4 F4KCF4 2 2 2 Histone H2A HTA12 tr|F4KCF4|F4KCF4_ARATH Histone H2A OS=Arabidopsis thaliana OX=3702 GN=HTA12 PE=1 SV=1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 7.3 7.3 7.3 18.891 177 177 0 31.371 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 7.3 7.3 7.3 5.6 547700000 24536000 27762000 32254000 24423000 24889000 18056000 61053000 51630000 57131000 22793000 29789000 88670000 31045000 9273100 44393000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 2 1 1 0 7 VLELAGNAAR;VLELAGNAARDNK 62 456;457 True;True 470;471 5647;5648;5649;5650;5651;5652;5653;5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668 2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919 2906;2918 -1 F4KDU5;P49691 F4KDU5;P49691 6;6 3;3 3;3 60S ribosomal protein L4-2 At5g02870;RPL4D tr|F4KDU5|F4KDU5_ARATH Ribosomal protein L4/L1 family OS=Arabidopsis thaliana OX=3702 GN=At5g02870 PE=1 SV=1;sp|P49691|RL4B_ARATH 60S ribosomal protein L4-2 OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2 2 6 3 3 1 1 2 2 0 0 6 5 6 0 0 0 0 0 1 0 1 1 2 0 0 3 2 3 0 0 0 0 0 1 0 1 1 2 0 0 3 2 3 0 0 0 0 0 1 13.8 8.6 8.6 44.592 406 406;407 0 21.472 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2.5 3.2 6.4 8.6 0 0 13.8 13.8 13.8 0 0 0 0 0 4.7 98261000 0 1168600 2634800 4875900 0 0 45065000 14862000 26433000 0 0 0 0 0 3222300 0 0 0 1857900 0 0 3297900 2077500 2185200 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 4 IINSDEVQSVVNPIKDGSK;KGPLVVFGTEGAK;KGPLVVFGTEGAKIVK;QIGAYDDAEK;QIGAYDDAEKAK;TSAAIKVLKQIGAYDDAEK 63 223;248;249;324;325;411 True;True;True;False;False;False 231;256;257;335;336;424 2731;2732;2733;2734;2735;2987;2988;2989;2990;2991;2992;2993;2994;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;5136;5137;5138 1347;1348;1498;1499;1500;2085;2086;2087;2088;2089;2662 1347;1498;1500;2085;2088;2662 -1;-1 O03042 O03042 8 8 8 Ribulose bisphosphate carboxylase large chain rbcL sp|O03042|RBL_ARATH Ribulose bisphosphate carboxylase large chain OS=Arabidopsis thaliana OX=3702 GN=rbcL PE=1 SV=1 1 8 8 8 3 4 6 7 7 6 8 7 8 5 6 7 7 5 6 3 4 6 7 7 6 8 7 8 5 6 7 7 5 6 3 4 6 7 7 6 8 7 8 5 6 7 7 5 6 15.7 15.7 15.7 52.954 479 479 0 150.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.3 9 14.6 14.6 14.6 13.2 15.7 14.6 15.7 9 12.5 14.6 11.5 12.1 10.4 3397500000 19581000 59369000 89036000 149750000 98357000 57806000 321300000 351720000 301220000 184200000 338670000 609300000 398390000 97986000 320870000 25411000 27813000 24142000 27378000 29593000 26373000 18144000 26500000 25458000 26986000 39421000 29847000 43280000 54251000 56419000 0 1 3 2 3 3 8 4 4 1 2 3 3 2 3 42 ASVGFKAGVK;ASVGFKAGVKEYK;IPPAYTKTFQGPPHGIQVER;LEDLRIPPAYTKTFQGPPHGIQVER;LGLSAKNYGR;LSGGDHIHAGTVVGKLEGDR;TFQGPPHGIQVER;VLAKALR 64 77;78;229;267;272;288;385;454 True;True;True;True;True;True;True;True 80;81;237;275;280;296;398;468 854;855;856;857;858;859;860;861;862;863;864;865;866;867;868;869;870;871;872;873;874;875;876;877;878;879;880;881;882;883;884;885;886;887;2788;2789;2790;2791;2792;2793;2794;2795;2796;2797;2798;3204;3205;3206;3207;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264;3444;3445;3446;3447;3448;3449;3450;3451;3452;3453;4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635 451;452;453;454;455;456;457;458;459;460;461;462;463;464;465;466;1408;1409;1410;1607;1608;1609;1617;1618;1619;1620;1621;1622;1696;1697;2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403;2404;2903;2904 456;464;1408;1608;1620;1696;2394;2903 -1 O04603 O04603 1 1 1 50S ribosomal protein L5, chloroplastic RPL5 sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=2 SV=1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 5.3 5.3 5.3 28.343 262 262 0 20.265 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 5.3 5.3 0 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 0 70382000 1808700 1930600 0 5856000 3381100 2150900 8428100 7521100 8623700 4845800 6351500 12733000 4700300 2051300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 6 DIALITGQKPIKTR 65 109 True 113 1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324;1325;1326 750;751;752;753;754;755 753 -1 Q9S9K7;O04848;Q9LD28;O81826;Q9LHQ5;Q9C681;Q94F49;Q9C944;Q9FJE8 Q9S9K7;O04848;Q9LD28;O81826;Q9LHQ5;Q9C681 6;6;5;5;5;5;2;1;1 6;6;5;5;5;5;2;1;1 6;6;5;5;5;5;2;1;1 Probable histone H2AXb;Probable histone H2AXa;Histone H2A.6;Probable histone H2A.3;Probable histone H2A.2;Probable histone H2A.1 RAT5 sp|Q9S9K7|H2AXB_ARATH Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1;sp|O04848|H2AXA_ARATH Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1;sp|Q9LD28|H2A6_ARATH Histone H2A.6 OS=Arabidopsis thalia 9 6 6 6 5 5 4 3 4 4 6 5 5 4 5 5 5 4 5 5 5 4 3 4 4 6 5 5 4 5 5 5 4 5 5 5 4 3 4 4 6 5 5 4 5 5 5 4 5 29.6 29.6 29.6 14.783 142 142;142;130;131;132;132;150;134;150 0 52.246 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12.7 12.7 10.6 10.6 10.6 10.6 29.6 27.5 27.5 27.5 27.5 27.5 27.5 27.5 27.5 1626300000 55659000 72278000 77053000 90413000 66509000 49504000 181990000 158940000 158520000 63139000 118350000 308800000 88775000 22058000 114320000 19073000 24946000 17386000 18083000 17426000 21976000 11701000 12423000 14403000 13314000 18132000 19420000 14649000 16286000 20395000 0 2 0 1 3 1 4 4 3 1 1 3 1 2 1 27 AGLQFPVGR;AGLQFPVGRIAR;AGLQFPVGRIARFLK;LLGSVTIANGGVLPNIHQTLLPSK;SSKAGLQFPVGR;SSKAGLQFPVGRIAR 66 36;37;38;284;373;374 True;True;True;True;True;True 36;37;38;292;385;386 419;420;421;422;423;424;425;426;427;428;429;430;431;432;433;434;435;436;437;438;439;440;441;442;443;444;445;446;447;448;449;450;3402;3403;3404;3405;3406;3407;3408;3409;3410;4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617;4618;4619;4620;4621 204;205;206;207;208;209;210;211;212;213;214;215;216;217;218;219;220;221;222;1687;2341;2342;2343;2344;2345;2346;2347;2348;2349;2350;2351;2352;2353;2354 209;220;222;1687;2352;2353 -1;-1;-1;-1;-1;-1;-1;-1;-1 O22860 O22860 1 1 1 60S ribosomal protein L38 RPL38A sp|O22860|RL38_ARATH 60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 24.6 24.6 24.6 8.1216 69 69 0 6.4251 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 24.6 24.6 24.6 0 0 0 24.6 24.6 24.6 0 0 0 0 0 0 75149000 7336500 11086000 25010000 0 0 0 15672000 9727500 6316800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 ADKLKQSLPPGLSVQDL 67 12 True 12 153;154;155;156;157;158 93;94 93 -1 O22914 O22914 2 2 2 Calvin cycle protein CP12-1, chloroplastic CP12-1 sp|O22914|CP121_ARATH Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-1 PE=1 SV=1 1 2 2 2 2 2 2 0 2 0 2 1 1 0 0 0 0 0 0 2 2 2 0 2 0 2 1 1 0 0 0 0 0 0 2 2 2 0 2 0 2 1 1 0 0 0 0 0 0 15.3 15.3 15.3 13.487 124 124 0 14.842 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15.3 15.3 15.3 0 15.3 0 15.3 15.3 15.3 0 0 0 0 0 0 62437000 6344600 5770400 11328000 0 13205000 0 14543000 4431900 6814300 0 0 0 0 0 0 3784500 3577900 3923300 0 5980800 0 2366900 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 3 ATSEGEISEK;ATSEGEISEKVEKSIQEAK 68 88;89 True;True 91;92 1051;1052;1053;1054;1055;1056;1057;1058;1059;1060;1061;1062 590;591;592 591;592 -1 Q8VYF1;O23515 Q8VYF1;O23515 1;1 1;1 1;1 60S ribosomal protein L15-2;60S ribosomal protein L15-1 RPL15B;RPL15A sp|Q8VYF1|RL152_ARATH 60S ribosomal protein L15-2 OS=Arabidopsis thaliana OX=3702 GN=RPL15B PE=2 SV=1;sp|O23515|RL151_ARATH 60S ribosomal protein L15-1 OS=Arabidopsis thaliana OX=3702 GN=RPL15A PE=2 SV=1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 7.8 7.8 7.8 24.239 204 204;204 0 41.952 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 7.8 7.8 7.8 7.8 7.8 0 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 175180000 1542300 2511100 3778300 5745600 4244100 0 52665000 27558000 32559000 6193500 5296300 10002000 9766100 3842900 9473000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 5 GIVYGKPTNQGVTQLK 69 182 True 188 2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286 1182;1183;1184;1185;1186 1186 -1;-1 Q9LZT0;P40283;O23629;Q9FFC0;Q9LQQ4;Q9SI96;Q9SF55;Q9LZ45;Q9LFF6 Q9LZT0;P40283;O23629;Q9FFC0;Q9LQQ4;Q9SI96 4;4;4;3;3;3;1;1;1 4;4;4;3;3;3;1;1;1 3;3;3;3;3;3;1;1;1 Histone H2B.7;Histone H2B.11;Histone H2B.6;Histone H2B.10;Histone H2B.1;Histone H2B.3 H2B sp|Q9LZT0|H2B7_ARATH Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3;sp|P40283|H2B11_ARATH Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5;sp|O23629|H2B6_ARATH Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B 9 4 4 3 2 2 3 3 3 3 3 3 3 4 4 3 3 0 4 2 2 3 3 3 3 3 3 3 4 4 3 3 0 4 2 2 2 3 3 3 2 2 2 3 3 2 3 0 3 28.3 28.3 20.7 15.912 145 145;150;150;145;148;151;126;132;138 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20.7 20.7 28.3 20.7 20.7 20.7 28.3 26.2 26.2 28.3 28.3 28.3 20.7 0 28.3 4685100000 208840000 213580000 432110000 178510000 205000000 80702000 955610000 764470000 745440000 74775000 142040000 403250000 113050000 0 167720000 93684000 153480000 267000000 44528000 82964000 38214000 201550000 132950000 151110000 21502000 30148000 77447000 19826000 0 57686000 1 2 2 1 2 1 3 2 4 1 2 2 1 0 3 27 HAVSEGTKAVTKFTSS;QVHPDIGISSK;SVETYKIYIFK;VLKQVHPDIGISSK 70 200;330;378;459 True;True;True;True 207;341;390;473 2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4639;4640;4641;4642;4643;4644;4645;4646;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684 1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;2095;2096;2097;2359;2360;2361;2922;2923 1249;2096;2359;2922 -1;-1;-1;-1;-1;-1;-1;-1;-1 O49006;Q42534 O49006 7;3 7;3 7;3 Pectinesterase/pectinesterase inhibitor 3;Pectinesterase inhibitor 3;Pectinesterase 3 PME3 sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=PME3 PE=1 SV=2 2 7 7 7 7 7 4 7 7 5 7 7 6 5 5 7 2 3 6 7 7 4 7 7 5 7 7 6 5 5 7 2 3 6 7 7 4 7 7 5 7 7 6 5 5 7 2 3 6 13.5 13.5 13.5 64.255 592 592;587 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13.5 13.5 6.8 13.5 13.5 11.3 13.5 13.5 12.2 10 11.8 13.5 6.4 6.4 13.2 1594000000 32953000 38710000 36161000 124860000 76946000 38719000 242650000 184910000 108850000 62764000 122720000 376840000 40654000 25261000 80968000 13274000 13262000 9930500 24780000 17299000 16216000 16101000 14433000 11539000 12355000 17690000 21358000 8810200 15348000 15217000 2 2 3 5 3 2 6 6 2 3 4 9 2 2 3 54 DITFQNTAGPSKHQAVALR;IGATSDLQSVK;NMVTAQGRTDPNQNTGIVIQK;NVVDGSTTFHSATVAAVGER;TDPNQNTGIVIQK;TIITGSRNVVDGSTTFHSATVAAVGER;TRTIITGSRNVVDGSTTFHSATVAAVGER 71 113;208;306;314;382;401;408 True;True;True;True;True;True;True 117;215;316;317;325;395;414;421 1369;1370;1371;1372;1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;2575;2576;2577;2578;2579;2580;2581;2582;2583;2584;2585;2586;2587;2588;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652;4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4687;4688;4689;4690;4691;4692;4693;4694;4695;4696;4697;4698;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035;5036;5037;5038;5039;5040;5041;5042;5043;5044;5045;5046;5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111 765;766;767;768;769;770;771;772;1296;1801;1802;2046;2047;2048;2049;2050;2051;2052;2371;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2648;2649;2650;2651;2652 768;1296;1801;2052;2371;2612;2649 8 457 -1;-1 Q9SRV5;O50008 Q9SRV5;O50008 1;1 1;1 1;1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2;5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 MS2;MS1 sp|Q9SRV5|METE2_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=MS2 PE=1 SV=1;sp|O50008|METE1_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 OS=Arabidopsis thal 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1.2 1.2 1.2 84.583 765 765;765 0 13.254 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 0 362550000 21452000 26113000 37265000 16576000 11019000 4339200 64957000 55399000 38092000 12118000 12271000 31880000 20954000 10112000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 1 0 1 1 1 2 1 1 0 2 1 1 0 17 ASHIVGYPR 72 70 True 73 783;784;785;786;787;788;789;790;791;792;793;794;795;796 410;411;412;413;414;415;416;417;418;419;420;421;422;423;424;425;426;427 422 -1;-1 Q2V4Q4;Q3EDH2;O50061 Q2V4Q4;Q3EDH2;O50061 3;3;3 3;3;3 3;3;3 50S ribosomal protein L4, chloroplastic RPL4 tr|Q2V4Q4|Q2V4Q4_ARATH AT1G07320 protein OS=Arabidopsis thaliana OX=3702 GN=RPL4 PE=1 SV=1;tr|Q3EDH2|Q3EDH2_ARATH Ribosomal protein L4 OS=Arabidopsis thaliana OX=3702 GN=RPL4 PE=1 SV=1;sp|O50061|RK4_ARATH 50S ribosomal protein L4, chloroplastic OS=Arabidop 3 3 3 3 2 2 3 1 0 0 3 2 2 1 1 1 1 1 2 2 2 3 1 0 0 3 2 2 1 1 1 1 1 2 2 2 3 1 0 0 3 2 2 1 1 1 1 1 2 11.2 11.2 11.2 30.142 278 278;280;282 0 36.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 8.3 8.3 11.2 3.2 0 0 11.2 8.3 8.3 3.2 3.2 3.2 3.2 3.2 8.3 223810000 15902000 21674000 51259000 5290100 0 0 43435000 22470000 19727000 3310400 4144100 12630000 7840000 4664500 11464000 16212000 18382000 21227000 0 0 0 7793500 0 0 0 0 0 0 0 11621000 1 1 2 0 0 0 1 0 0 0 0 0 0 0 1 6 LVLTPAAVEFLNAR;VGETYLDLK;VGETYLDLKAAPEDTAR 73 292;438;439 True;True;True 300;452;453 3486;3487;3488;3489;3490;3491;3492;5470;5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481;5482;5483;5484 1741;2839;2840;2841;2842;2843;2844;2845 1741;2839;2845 -1;-1;-1 O65282 O65282 1 1 1 20 kDa chaperonin, chloroplastic CPN21 sp|O65282|CH20_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10.7 10.7 10.7 26.802 253 253 0 6.1963 By MS/MS By MS/MS By matching 10.7 0 10.7 10.7 0 0 0 0 0 0 0 0 0 0 0 7231800 1994400 0 3784100 1453300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 TLGGILLPSTAQSKPQGGEVVAVGEGR 74 403 True 416 5059;5060;5061 2636 2636 -1 O65351 O65351 2 2 2 Subtilisin-like protease SBT1.7 SBT1.7 sp|O65351|SBT17_ARATH Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana OX=3702 GN=SBT1.7 PE=1 SV=1 1 2 2 2 0 0 0 0 0 2 0 0 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 0 1 1 2 1 0 0 2.2 2.2 2.2 79.414 757 757 0 36.693 By MS/MS By matching By matching By MS/MS By matching 0 0 0 0 0 2.2 0 0 0 1.8 2.2 2.2 2.2 0 0 37913000 0 0 0 0 0 7247900 0 0 0 1941900 3822000 21777000 3124400 0 0 0 0 0 0 0 3797200 0 0 0 0 0 1910500 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 3 TVTSVGGAGTYSVK;YTRTVTSVGGAGTYSVK 75 416;487 True;True 429;501 5173;5174;5175;5921;5922;5923;5924 2680;3025;3026 2680;3025 -1 O65581 O65581 1 1 1 Fructose-bisphosphate aldolase M3E9.40 sp|O65581|ALFC5_ARATH Fructose-bisphosphate aldolase 5, cytosolic OS=Arabidopsis thaliana OX=3702 GN=FBA5 PE=1 SV=1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 5.9 5.9 5.9 38.293 358 358 0 12.27 By MS/MS By MS/MS By MS/MS 5.9 5.9 5.9 0 0 0 0 0 0 0 0 0 0 0 0 12553000 4403600 4980100 3169000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 YIATPGKGILAADESTGTIGK 76 481 True 495 5860;5861;5862 3005 3005 -1 O80929 O80929 4 4 2 60S ribosomal protein L36-1 RPL36A sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1 1 4 4 2 2 2 2 2 2 0 4 3 3 0 0 0 1 1 1 2 2 2 2 2 0 4 3 3 0 0 0 1 1 1 0 0 0 0 1 0 2 1 1 0 0 0 0 1 0 33.6 33.6 19.5 12.736 113 113 0 35.144 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 14.2 14.2 14.2 14.2 22.1 0 33.6 23 23 0 0 0 13.3 10.6 13.3 167450000 5286600 6718700 10615000 9283900 4467300 0 62340000 31328000 27220000 0 0 0 5119800 311350 4757200 2880800 2855300 2996600 2653100 0 0 3163700 2133800 2524700 0 0 0 2525100 0 2630100 1 0 0 0 0 0 3 2 2 0 0 0 0 0 0 8 EVAGMAPYEK;SLGGAAAAEKKM;TGLFVGLNKGHVVTR;TGLFVGLNKGHVVTRR 77 156;361;391;392 True;True;True;True 161;372;404;405 1980;1981;1982;1983;4424;4425;4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813;4814 1072;2277;2413;2414;2415;2416;2417;2418 1072;2277;2414;2417 9;10 53;113 -1 O82628 O82628 1 1 1 V-type proton ATPase subunit G1 VHA-G1 sp|O82628|VATG1_ARATH V-type proton ATPase subunit G1 OS=Arabidopsis thaliana OX=3702 GN=VHA-G1 PE=1 SV=1 1 1 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 10 10 10 12.397 110 110 0 26.133 By MS/MS By MS/MS By MS/MS By matching 10 10 10 0 0 0 0 0 10 0 0 0 0 0 0 33836000 9394400 8194300 6632500 0 0 0 0 0 9614900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3 EEAEKEIAEYK 78 132 True 137 1613;1614;1615;1616 923;924;925 923 -1 O82762 O82762 1 1 1 At2g25970 tr|O82762|O82762_ARATH F17H15.1/F17H15.1 OS=Arabidopsis thaliana OX=3702 GN=At2g25970 PE=1 SV=1 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2.1 2.1 2.1 64.606 632 632 0.0087336 5.9061 By MS/MS 0 0 2.1 0 0 0 0 0 0 0 0 0 0 0 0 1823200 0 0 1823200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 VGVIIGKGGETIK 79 450 True 464 5615 2896 2896 -1 Q39141;Q8VZ87;P0CJ48;P04778 Q39141;Q8VZ87;P0CJ48;P04778 1;1;1;1 1;1;1;1 1;1;1;1 Chlorophyll a-b binding protein 3, chloroplastic;Chlorophyll a-b binding protein 2, chloroplastic;Chlorophyll a-b binding protein 1, chloroplastic Lhb1B2;LHCB1.2;LHCB1.1;LHCB1.3 tr|Q39141|Q39141_ARATH Chlorophyll a-b binding protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=Lhb1B2 PE=1 SV=1;sp|Q8VZ87|CB1B_ARATH Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB1.2 PE=1 SV=2;sp|P0CJ48|C 4 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 4.5 4.5 4.5 28.054 265 265;267;267;267 0 6.1289 By MS/MS By MS/MS 0 0 0 0 0 0 0 0 0 0 4.5 4.5 0 0 0 18915000 0 0 0 0 0 0 0 0 0 0 3582200 15332000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 GPSGSPWYGSDR 80 194 True 201 2411;2412 1223 1223 -1;-1;-1;-1 P0DKC4;P0DKC3 P0DKC4;P0DKC3 1;1 1;1 1;1 Phosphoglycolate phosphatase 1B, chloroplastic;Phosphoglycolate phosphatase 1A, chloroplastic PGLP1B;PGLP1A sp|P0DKC4|PGP1B_ARATH Phosphoglycolate phosphatase 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGLP1B PE=1 SV=1;sp|P0DKC3|PGP1A_ARATH Phosphoglycolate phosphatase 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGLP1A PE=1 SV=1 2 1 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 0 2.2 2.2 2.2 39.761 362 362;362 0 11.501 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2.2 2.2 2.2 2.2 0 0 0 0 2.2 0 0 0 0 2.2 0 21398000 4303300 4830000 6823900 1685200 0 0 0 0 2663800 0 0 0 0 1092200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ISDFLSPK 81 233 True 241 2818;2819;2820;2821;2822;2823 1417 1417 -1;-1 P10795 P10795 1 1 1 Ribulose bisphosphate carboxylase small chain 1A, chloroplastic RBCS-1A sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small subunit 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCS-1A PE=1 SV=2 1 1 1 1 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 3.3 3.3 3.3 20.216 180 180 0 73.999 By MS/MS By MS/MS By MS/MS By MS/MS 3.3 0 3.3 0 0 0 3.3 0 0 3.3 0 0 0 0 0 17041000 2560900 0 4626100 0 0 0 5217100 0 0 4636600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 3 PPSFTG 82 316 True 327 4021;4022;4023;4024 2054;2055;2056;2057 2055 -1 P16180 P16180 1 1 1 30S ribosomal protein S17, chloroplastic RPS17 sp|P16180|RR17_ARATH 30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.7 6.7 6.7 16.282 149 149 0 6.4059 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 120750000 5592800 5098100 5313000 16078000 5147300 2704200 17887000 10072000 12425000 3438500 5490200 19978000 3953900 1996500 5579000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 2 2 1 1 1 1 1 0 1 14 SFVALPVIAR 83 349 True 360 4304;4305;4306;4307;4308;4309;4310;4311;4312;4313;4314;4315;4316;4317;4318 2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198 2197 -1 P16181;P42733;O65569 P16181;P42733;O65569 5;4;4 5;4;4 5;4;4 40S ribosomal protein S11-1;40S ribosomal protein S11-3;40S ribosomal protein S11-2 RPS11A;RPS11C;RPS11B sp|P16181|RS111_ARATH 40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1;sp|P42733|RS113_ARATH 40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2;sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS 3 5 5 5 3 4 4 3 2 3 5 5 5 3 3 2 3 3 2 3 4 4 3 2 3 5 5 5 3 3 2 3 3 2 3 4 4 3 2 3 5 5 5 3 3 2 3 3 2 25 25 25 17.957 160 160;159;159 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11.9 18.1 18.1 11.9 11.9 11.9 25 25 25 11.9 11.9 8.1 11.9 11.9 11.9 1716900000 76670000 41312000 85537000 114180000 73267000 31333000 492110000 365120000 152800000 66891000 57777000 91584000 36334000 18837000 13111000 38564000 32384000 41855000 36197000 29063000 15956000 35367000 48570000 35944000 31000000 21121000 13912000 12669000 13947000 0 0 0 1 1 1 0 3 4 3 2 1 0 1 0 0 17 AEQTEKAFLK;AEQTEKAFLKQPK;AFLKQPKVFLSSK;DYLHFVKKYQR;NIGLGFKTPR 84 22;23;28;124;303 True;True;True;True;True 22;23;28;129;313 252;253;254;255;256;257;258;259;260;261;262;263;264;265;266;267;268;269;270;271;272;273;274;275;276;277;278;279;280;281;282;283;284;285;332;333;334;335;336;337;338;339;340;341;342;343;344;345;1529;1530;1531;3627;3628;3629;3630;3631 143;144;145;146;147;148;149;150;151;152;153;154;155;156;157;172;173;174;175;176;871;872;873;874;1798 143;157;175;873;1798 -1;-1;-1 Q9LUT2;P23686;P17562 Q9LUT2;P23686;P17562 2;2;2 2;2;2 2;2;2 S-adenosylmethionine synthase 4;S-adenosylmethionine synthase 1;S-adenosylmethionine synthase 2 METK4;SAM1;SAM2 sp|Q9LUT2|METK4_ARATH S-adenosylmethionine synthase 4 OS=Arabidopsis thaliana OX=3702 GN=METK4 PE=1 SV=1;sp|P23686|METK1_ARATH S-adenosylmethionine synthase 1 OS=Arabidopsis thaliana OX=3702 GN=SAM1 PE=1 SV=2;sp|P17562|METK2_ARATH S-adenosylmethionine synt 3 2 2 2 1 0 1 1 1 0 2 2 2 1 0 1 1 1 1 1 0 1 1 1 0 2 2 2 1 0 1 1 1 1 1 0 1 1 1 0 2 2 2 1 0 1 1 1 1 6.6 6.6 6.6 42.795 393 393;393;393 0 12.025 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2.5 0 6.6 2.5 2.5 0 6.6 6.6 6.6 2.5 0 2.5 2.5 2.5 2.5 86766000 804110 0 2584500 5378600 1385900 0 22859000 15262000 14503000 3854700 0 6923300 4821200 1903900 6485800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 TIFHLNPSGR;TIFHLNPSGRFVIGGPHGDAGLTGRK 85 399;400 True;True 412;413 5002;5003;5004;5005;5006;5007;5008;5009;5010;5011;5012;5013;5014;5015;5016 2599;2600 2599;2600 -1;-1;-1 P19366;P83484;P83483;Q9C5A9 P19366 7;1;1;1 7;1;1;1 7;1;1;1 ATP synthase subunit beta, chloroplastic atpB sp|P19366|ATPB_ARATH ATP synthase subunit beta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpB PE=1 SV=2 4 7 7 7 7 7 4 6 6 5 7 6 7 4 7 6 6 5 5 7 7 4 6 6 5 7 6 7 4 7 6 6 5 5 7 7 4 6 6 5 7 6 7 4 7 6 6 5 5 15.3 15.3 15.3 53.933 498 498;556;556;559 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15.3 15.3 12 12.2 13.3 13.3 15.3 14.3 15.3 8.4 15.3 14.3 13.3 12.2 10.4 2938100000 35862000 57219000 29540000 162970000 119940000 75110000 348510000 296160000 264230000 112750000 222630000 712820000 231710000 43916000 224760000 15890000 21678000 21319000 29947000 28585000 31350000 19106000 23098000 23996000 25642000 27655000 42252000 37318000 33805000 43285000 0 3 1 4 4 3 6 5 7 3 5 8 8 1 7 65 EGNDLYMEMK;GIYPAVDPLDSTSTMLQPR;GLAAKGIYPAVDPLDSTSTMLQPR;IGLFGGAGVGK;RTNPTTSNPEVSIR;RTNPTTSNPEVSIREK;VALVYGQMNEPPGAR 86 139;183;184;216;340;341;425 True;True;True;True;True;True;True 144;189;190;191;223;351;352;438;439 1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232;4233;4234;4235;4236;4237;4238;4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250;4251;4252;4253;4254;4255;4256;4257;4258;4259;4260;4261;4262;4263;4264;5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281;5282;5283 973;974;975;976;1187;1188;1189;1190;1191;1192;1193;1317;1318;1319;1320;1321;1322;1323;1324;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727 973;1188;1192;1319;2135;2162;2717 11;12;13;14 214;216;239;374 -1;-1;-1;-1 P23321 P23321 5 5 2 Oxygen-evolving enhancer protein 1-1, chloroplastic PSBO1 sp|P23321|PSBO1_ARATH Oxygen-evolving enhancer protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBO1 PE=1 SV=2 1 5 5 2 2 3 3 3 3 4 3 3 3 3 4 4 4 3 4 2 3 3 3 3 4 3 3 3 3 4 4 4 3 4 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 19 19 9 35.142 332 332 0 120.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4.8 9.9 9.9 9.9 9.9 14.8 9.9 9.9 9.9 9.9 14.8 14.8 14.8 9 14.8 687970000 14846000 13763000 16578000 31805000 15516000 16716000 98052000 104530000 89941000 23711000 52150000 89902000 51882000 14063000 54515000 7819700 5423800 4492000 8765300 5275900 4608500 7849000 9610100 10407000 6370100 7859600 6455500 7890100 5968100 8678000 1 1 1 2 0 0 3 3 3 1 4 5 5 1 6 36 ADSVSKNAPPEFQNTK;ENVKNTAASVGEITLK;FLVPSYRGSSFLDPKGR;NTAASVGEITLK;QLDASGKPDSFTGK 87 14;152;166;307;327 True;True;True;True;True 14;157;172;318;338 168;169;170;171;172;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;2060;2061;2062;2063;2064;2065;2066;2067;2068;2069;2070;2071;2072;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667;4105 100;101;102;103;1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058;1097;1098;1099;1100;1101;1102;1103;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817;2091 103;1056;1098;1805;2091 -1 P25696 P25696 1 1 1 Bifunctional enolase 2/transcriptional activator ENO2 sp|P25696|ENO2_ARATH Bifunctional enolase 2/transcriptional activator OS=Arabidopsis thaliana OX=3702 GN=ENO2 PE=1 SV=1 1 1 1 1 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 2 2 2 47.719 444 444 0 7.8228 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 2 2 2 0 0 2 2 2 2 2 2 2 0 105620000 0 0 5458700 18650000 8112800 0 0 6478500 11087000 8247900 9143100 26348000 7831200 4258200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 1 1 1 1 1 0 9 ATITVVKAR 88 83 True 86 925;926;927;928;929;930;931;932;933;934 485;486;487;488;489;490;491;492;493;494 491 -1 P25855 P25855 1 1 1 Glycine cleavage system H protein 1, mitochondrial GDH1 sp|P25855|GCSH1_ARATH Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH1 PE=1 SV=1 1 1 1 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 10.9 10.9 10.9 17.947 165 165 0 6.863 By matching By matching By MS/MS By MS/MS 10.9 10.9 10.9 0 0 10.9 0 0 0 0 0 0 0 0 0 7190700 1242300 934620 2299600 0 0 2714200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 ATSEILSPISGEIIEVNK 89 90 True 93 1063;1064;1065;1066 593 593 -1 P25857 P25857 3 3 1 Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic GAPB sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAPB PE=1 SV=2 1 3 3 1 3 3 2 1 1 0 3 2 3 0 0 0 0 1 1 3 3 2 1 1 0 3 2 3 0 0 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 7.2 7.2 2 47.659 447 447 0 44.304 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7.2 7.2 5.1 3.4 3.4 0 7.2 3.8 7.2 0 0 0 0 3.4 3.4 345830000 26911000 31642000 25771000 16574000 0 0 96897000 43369000 83758000 0 0 0 0 0 20907000 11555000 16928000 12439000 0 0 0 9715400 9459400 14004000 0 0 0 0 0 0 0 1 1 0 1 0 1 1 2 0 0 0 0 1 1 9 AAALNIVPTSTGAAK;VAINGFGR;YDSMLGTFK 90 1;423;478 True;True;True 1;436;492 15;16;17;18;19;20;21;22;23;5243;5244;5245;5246;5247;5248;5843;5844;5845;5846;5847 6;7;8;9;10;11;2709;2710;2711;2997 10;2710;2997 15 131 -1 P27202 P27202 1 1 1 Photosystem II 10 kDa polypeptide, chloroplastic PSBR sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 10 10 10 14.586 140 140 0 24.21 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 10 10 10 0 10 10 10 10 10 10 10 10 10 10 1092100000 14994000 19087000 41474000 2394800 0 9486100 362320000 28855000 207380000 50234000 63914000 77375000 83756000 42714000 88090000 25202000 27117000 25311000 0 0 0 46738000 23302000 20375000 17357000 17053000 13707000 20788000 24701000 21577000 0 0 1 0 0 0 3 1 1 0 0 0 0 0 0 6 TDKPFGINGSMDLR 91 381 True 393;394 4658;4659;4660;4661;4662;4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686 2365;2366;2367;2368;2369;2370 2368 16 59 -1 P30187 P30187 1 1 1 Calmodulin-like protein 10 CML10 sp|P30187|CML10_ARATH Calmodulin-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=CML10 PE=2 SV=1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 6.3 6.3 6.3 21.727 191 191 0.0088106 5.9492 By MS/MS 0 0 0 0 0 0 0 0 0 0 0 6.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 NIIAAPMTDFIK 92 304 True 314 3632 1799 1799 -1 P31168 P31168 1 1 1 Dehydrin COR47 COR47 sp|P31168|COR47_ARATH Dehydrin COR47 OS=Arabidopsis thaliana OX=3702 GN=COR47 PE=1 SV=2 1 1 1 1 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 12.5 12.5 12.5 29.896 265 265 0 98.904 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 12.5 12.5 12.5 12.5 12.5 12.5 0 0 0 0 0 0 0 67656000 0 0 8278600 3021400 6951100 4475700 31531000 13398000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 3 AEDSPAVTSTPLVVTEHPVEPTTELPVEHPEEK 93 16 True 16 177;178;179;180;181;182 107;108;109 108 -1 P33207 P33207 1 1 1 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic sp|P33207|FABG_ARATH 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g24360 PE=1 SV=2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3.8 3.8 3.8 33.548 319 319 0 6.5019 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 0 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 138660000 0 2356200 3446400 12051000 4801200 5309000 9728000 15325000 8880700 4424200 12774000 45580000 2780500 1403800 9800700 0 0 0 0 0 0 0 0 0 0 2734100 5073900 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 3 GGVISFSKTAAR 94 180 True 186 2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261 1176;1177;1178 1177 -1 P34788 P34788 2 2 2 40S ribosomal protein S18 RPS18A sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1 1 2 2 2 2 2 2 2 2 0 2 2 2 1 1 1 2 1 1 2 2 2 2 2 0 2 2 2 1 1 1 2 1 1 2 2 2 2 2 0 2 2 2 1 1 1 2 1 1 16.4 16.4 16.4 17.545 152 152 0 44.813 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16.4 16.4 16.4 16.4 16.4 0 16.4 16.4 16.4 7.9 7.9 7.9 16.4 7.9 7.9 142460000 3867600 3990700 8240500 4915800 3294900 0 41038000 27053000 20134000 2913400 3957500 7656100 8284100 2661800 4455200 2090500 1995400 2553000 1534200 1371000 0 4753400 3977000 2374900 0 0 0 1659800 0 0 1 1 1 1 0 0 2 2 1 0 0 0 0 0 0 9 SLVANEEFQHILR;YSQVVSNALDMK 95 364;485 True;True 375;499 4452;4453;4454;4455;4456;4457;4458;4459;4460;5901;5902;5903;5904;5905;5906;5907;5908;5909;5910;5911;5912;5913;5914 2301;2302;2303;2304;2305;2306;2307;3022;3023 2307;3022 17 105 -1 Q9SR73;P34789 Q9SR73;P34789 1;1 1;1 1;1 40S ribosomal protein S28-1;40S ribosomal protein S28-2 RPS28A;RPS28C sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1;sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 1 25 25 25 7.3705 64 64;64 0 43.873 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 25 25 25 25 25 0 25 25 25 25 0 25 0 0 25 403460000 19980000 6021500 12129000 11964000 2090400 0 108460000 109630000 81488000 11073000 0 32556000 0 0 8067400 7153900 4997100 5931100 4048200 0 0 7888900 11880000 9219700 2950900 0 2918300 0 0 1951200 2 1 1 1 0 0 4 4 2 0 0 1 0 0 0 16 MDSQIKHAVVVKVMGR 96 294 True 302;303;304 3516;3517;3518;3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529;3530;3531;3532;3533;3534;3535;3536;3537;3538;3539;3540;3541;3542;3543;3544;3545;3546;3547;3548;3549 1760;1761;1762;1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775 1773 18;19 1;14 -1;-1 P36212;P36210 P36212;P36210 1;1 1;1 1;1 50S ribosomal protein L12-3, chloroplastic;50S ribosomal protein L12-1, chloroplastic RPL12C;RPL12A sp|P36212|RK123_ARATH 50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2;sp|P36210|RK121_ARATH 50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 5.9 5.9 5.9 19.682 187 187;191 0.0088496 5.9494 By MS/MS By MS/MS By MS/MS By matching 5.9 5.9 5.9 5.9 0 0 0 0 0 0 0 0 0 0 0 18551000 3535500 3983700 4748100 6283600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 ELIEGLPKKFK 97 150 True 155 1901;1902;1903;1904 1042;1043 1043 -1;-1 P42036 P42036 5 1 1 40S ribosomal protein S14-3 RPS14C sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2 1 5 1 1 2 2 3 4 3 2 5 5 5 1 1 1 1 1 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 31.3 7.3 7.3 16.238 150 150 0 11.612 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 23.3 23.3 24 31.3 24 23.3 31.3 31.3 31.3 12.7 7.3 10.7 7.3 12.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 4 ATGGNKTKTPGPGAQSALR;IGRIEDVTPIPTDSTR;IGRIEDVTPIPTDSTRR;TPGPGAQSALR;VENVTLGPAVR 98 81;218;219;405;431 False;False;False;False;True 84;226;227;418;445 898;899;900;901;902;903;904;905;906;907;908;909;910;911;912;913;914;915;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;5068;5069;5070;5071;5072;5073;5378;5379;5380;5381 471;472;473;474;475;476;477;478;479;480;481;1334;1335;1336;1337;1338;1339;1340;1341;1342;2638;2639;2779;2780;2781;2782 477;1335;1342;2638;2780 -1 P42763 P42763 1 1 1 Dehydrin ERD14 ERD14 sp|P42763|ERD14_ARATH Dehydrin ERD14 OS=Arabidopsis thaliana OX=3702 GN=ERD14 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 7.6 7.6 7.6 20.786 185 185 0 50.434 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 0 0 0 0 228790000 17474000 24979000 36420000 8985900 20779000 11350000 27534000 21790000 19933000 15546000 23997000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 11 AEEIKNVPEQEVPK 99 17 True 17 183;184;185;186;187;188;189;190;191;192;193 110;111;112;113;114;115;116;117;118;119;120 116 -1 Q940B0;P42791;A0A1P8BGQ0;A0A1I9LT16;O22254 Q940B0;P42791;A0A1P8BGQ0;A0A1I9LT16;O22254 2;2;1;1;1 2;2;1;1;1 2;2;1;1;1 60S ribosomal protein L18-3;60S ribosomal protein L18-2;Putative 60S ribosomal protein L18-1 RPL18C;RPL18B;RPL18A sp|Q940B0|RL183_ARATH 60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1;sp|P42791|RL182_ARATH 60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2;tr|A0A1P8BGQ0|A0A1P8BGQ0_ARATH Ribosomal protein L18 5 2 2 2 1 1 1 1 2 1 1 2 1 2 2 2 2 2 2 1 1 1 1 2 1 1 2 1 2 2 2 2 2 2 1 1 1 1 2 1 1 2 1 2 2 2 2 2 2 10.7 10.7 10.7 20.967 187 187;187;134;134;188 0 33.076 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5.9 5.9 5.9 4.8 10.7 4.8 5.9 10.7 5.9 10.7 10.7 10.7 10.7 10.7 10.7 429530000 3960300 7681700 16185000 4127700 8863900 3582900 118690000 80457000 74505000 15741000 18404000 22177000 25070000 10192000 19891000 0 0 0 0 4597300 0 0 8463400 0 5494600 5271900 3559200 6717700 5983000 6276300 0 1 1 0 1 0 2 2 1 0 1 0 1 0 1 11 APLGQNTVLLR;GIDLIAGGK 100 56;181 True;True 59;187 647;648;649;650;651;652;653;654;655;656;657;658;659;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271 307;308;309;310;311;312;313;314;1179;1180;1181 311;1179 -1;-1;-1;-1;-1 P42795;P42794 P42795;P42794 1;1 1;1 1;1 60S ribosomal protein L11-1;60S ribosomal protein L11-2 RPL11A;RPL11B sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=1 SV=2;sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2 2 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 7.7 7.7 7.7 20.831 182 182;182 0 12.39 By matching By MS/MS 0 0 7.7 0 0 0 7.7 0 0 0 0 0 0 0 0 90011000 0 0 892990 0 0 0 89118000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 YEGVILNKSQNITG 101 480 True 494 5858;5859 3004 3004 -1;-1 P43286 P43286 1 1 1 Aquaporin PIP2-1;Aquaporin PIP2-1, N-terminally processed PIP2-1 sp|P43286|PIP21_ARATH Aquaporin PIP2-1 OS=Arabidopsis thaliana OX=3702 GN=PIP2-1 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.2 5.2 5.2 30.474 287 287 0 73.307 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 1272300000 22628000 23985000 21307000 65799000 82500000 29128000 142720000 91640000 126940000 77791000 119930000 221010000 114920000 42232000 89758000 13412000 13109000 9625600 19205000 27597000 18742000 15017000 17823000 19517000 25437000 27476000 24432000 28280000 28132000 22610000 2 0 1 2 2 0 4 2 2 2 3 2 2 2 1 27 AKDVEAVPGEGFQTR 102 43 True 43;44 477;478;479;480;481;482;483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515;516;517;518 242;243;244;245;246;247;248;249;250;251;252;253;254;255;256;257;258;259;260;261;262;263;264;265;266;267;268 248 -1 P43287 P43287 1 1 1 Aquaporin PIP2-2;Aquaporin PIP2-2, N-terminally processed PIP2-2 sp|P43287|PIP22_ARATH Aquaporin PIP2-2 OS=Arabidopsis thaliana OX=3702 GN=PIP2-2 PE=1 SV=2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 4.6 4.6 4.6 30.453 285 285 0 25.121 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 4.6 4.6 4.6 4.6 4.6 0 4.6 4.6 4.6 4.6 4.6 4.6 4.6 0 0 84758000 1350900 1493900 3973100 5660100 2401000 0 12396000 8395200 11782000 3965600 13959000 13203000 6178100 0 0 0 0 0 1712000 0 0 1463900 0 1523100 0 2236600 0 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 4 AKDVEGPEGFQTR 103 44 True 45;46 519;520;521;522;523;524;525;526;527;528;529;530;531;532;533;534;535 269;270;271;272 271 -1 P46286 P46286 10 10 5 60S ribosomal protein L8-1 RPL8A sp|P46286|RL81_ARATH 60S ribosomal protein L8-1 OS=Arabidopsis thaliana OX=3702 GN=RPL8A PE=1 SV=2 1 10 10 5 7 7 7 5 5 2 8 8 9 4 3 4 3 3 4 7 7 7 5 5 2 8 8 9 4 3 4 3 3 4 2 3 2 2 2 1 3 3 4 1 1 2 1 1 2 33.3 33.3 16.3 27.859 258 258 0 284.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 30.6 27.5 30.6 25.2 18.6 15.1 30.6 30.6 33.3 25.2 18.2 20.9 18.2 22.1 27.9 1417900000 29474000 37231000 77753000 30362000 26202000 12040000 355790000 283470000 309640000 39023000 46993000 69879000 45955000 22356000 31696000 4957200 6678200 7712000 3695200 5064300 5514000 12970000 14246000 15701000 7750900 7073900 3976600 6465400 14229000 6265100 2 5 6 2 3 1 8 9 10 3 3 4 0 2 3 61 ASGDYAIVIAHNPDSDTTR;ASGDYAIVIAHNPDSDTTRIK;ASGDYAIVIAHNPDSDTTRIKLPSGSK;ATLVVGNVLPLR;DAPPGQKVGLIAAR;DAPPGQKVGLIAARR;GPAKFRSLDFGER;GVVTEIIHDPGRGAPLAR;KATLVVGNVLPLR;VGLIAARR 104 66;67;68;84;100;101;188;199;244;449 True;True;True;True;True;True;True;True;True;True 69;70;71;87;103;104;195;206;252;463 734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772;773;774;775;776;935;936;937;938;939;940;941;942;943;944;945;946;947;948;949;1159;1160;1161;2350;2351;2352;2353;2354;2355;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2968;2969;2970;2971;2972;2973;2974;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614 376;377;378;379;380;381;382;383;384;385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400;401;402;403;404;405;495;496;497;498;499;500;501;502;503;504;505;506;507;508;654;655;1198;1199;1200;1201;1238;1239;1240;1241;1242;1243;1244;1488;1489;1490;1491;2894;2895 382;384;398;506;654;655;1200;1242;1489;2894 -1 P49200 P49200 1 1 1 40S ribosomal protein S20-1 RPS20A sp|P49200|RS201_ARATH 40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 1 1 1 1 1 1 0 1 0 1 1 1 0 0 1 1 0 0 0 1 1 0 1 0 1 1 1 0 0 1 1 0 0 0 1 1 0 1 0 1 1 1 0 0 1 1 0 0 0 8.9 8.9 8.9 13.878 124 124 0 6.6977 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 8.9 8.9 0 8.9 0 8.9 8.9 8.9 0 0 8.9 8.9 0 0 0 52865000 1000100 1019900 0 4116600 0 2336600 14987000 10680000 0 0 8810000 9915400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 ATAYQPMKPGK 105 80 True 83 890;891;892;893;894;895;896;897 469;470 470 20 8 -1 Q9SQZ1;Q9SJ36;Q9LZ17;P49205 Q9SQZ1;Q9SJ36;Q9LZ17;P49205 2;2;2;2 2;2;2;2 2;2;2;2 40S ribosomal protein S17-3;40S ribosomal protein S17-2;40S ribosomal protein S17-4;40S ribosomal protein S17-1 RPS17C;RPS17B;RPS17D;RPS17A sp|Q9SQZ1|RS173_ARATH 40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3;sp|Q9SJ36|RS172_ARATH 40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3;sp|Q9LZ17|RS174_ARATH 40S ribosomal protein S17-4 OS 4 2 2 2 1 2 1 1 1 0 1 2 2 0 0 0 0 0 0 1 2 1 1 1 0 1 2 2 0 0 0 0 0 0 1 2 1 1 1 0 1 2 2 0 0 0 0 0 0 15 15 15 16.036 140 140;140;141;141 0 11.994 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 8.6 15 8.6 8.6 8.6 0 8.6 15 15 0 0 0 0 0 0 119670000 3682700 6022900 4782700 4479500 4596900 0 26723000 36265000 33116000 0 0 0 0 0 0 0 4346600 0 0 0 0 0 4971500 4991800 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 4 IQKGPVRGISLK;QVIEKYYSR 106 231;331 True;True 239;342 2803;2804;2805;2806;2807;2808;2809;2810;2811;4141;4142;4143 1413;1414;2098;2099 1414;2099 -1;-1;-1;-1 P49211 P49211 2 2 2 60S ribosomal protein L32-1 RPL32A sp|P49211|RL321_ARATH 60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2 1 2 2 2 2 2 2 2 0 0 2 2 2 1 0 2 1 0 1 2 2 2 2 0 0 2 2 2 1 0 2 1 0 1 2 2 2 2 0 0 2 2 2 1 0 2 1 0 1 10.5 10.5 10.5 15.503 133 133 0 22.221 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 10.5 10.5 10.5 10.5 0 0 10.5 10.5 10.5 8.3 0 10.5 8.3 0 8.3 411490000 10309000 12243000 25068000 14910000 0 0 164780000 84357000 76844000 1689200 0 16679000 2217800 0 2391900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 ASQLDVVVTNR;ASQLDVVVTNRLAR 107 74;75 True;True 77;78 815;816;817;818;819;820;821;822;823;824;825;826;827;828;829;830;831;832;833 432;433;434 432;434 -1 Q9LR33;P49637 Q9LR33;P49637 1;1 1;1 1;1 60S ribosomal protein L27a-2;60S ribosomal protein L27a-3 RPL27AB;RPL27AC sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1;sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2 2 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 6.8 6.8 6.8 16.292 146 146;146 0 11.928 By MS/MS 0 0 6.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 EAGGAVVLTA 108 126 True 131 1535 876 876 -1;-1 P49688;Q9SCM3;Q93VB8;Q8L8Y0 P49688 3;1;1;1 3;1;1;1 3;1;1;1 40S ribosomal protein S2-3 RPS2C sp|P49688|RS23_ARATH 40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2 4 3 3 3 2 2 2 0 0 1 3 3 3 2 2 2 2 1 1 2 2 2 0 0 1 3 3 3 2 2 2 2 1 1 2 2 2 0 0 1 3 3 3 2 2 2 2 1 1 14 14 14 30.878 285 285;276;284;284 0 43.668 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 10.9 10.9 10.9 0 0 3.2 14 14 14 8.4 8.4 8.4 8.4 5.3 5.3 349840000 15232000 22909000 45318000 0 0 726040 91028000 62435000 63415000 6780500 9028200 12964000 9871100 2682300 7448000 9924600 11889000 12146000 0 0 0 9017400 9606700 14858000 6810000 6337100 5431000 6855400 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 4 ALSTSKPDPVVEDQA;FSRSPYQEHTDFLASK;WVPVTKLGR 109 50;168;477 True;True;True 52;174;491 582;583;584;585;586;587;588;589;590;591;592;593;2090;2091;2092;2093;2094;2095;5835;5836;5837;5838;5839;5840;5841;5842 291;1112;1113;2996 291;1113;2996 -1;-1;-1;-1 P50883;Q9LFH5;Q9FF52 P50883;Q9LFH5;Q9FF52 4;4;3 4;4;3 4;4;3 60S ribosomal protein L12-1;60S ribosomal protein L12-2;60S ribosomal protein L12-3 RPL12A;RPL12B;RPL12C sp|P50883|RL121_ARATH 60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2;sp|Q9LFH5|RL122_ARATH 60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1;sp|Q9FF52|RL123_ARATH 60S ribosomal protein L12-3 OS 3 4 4 4 0 0 0 2 1 0 4 3 4 1 1 1 1 0 1 0 0 0 2 1 0 4 3 4 1 1 1 1 0 1 0 0 0 2 1 0 4 3 4 1 1 1 1 0 1 25.3 25.3 25.3 17.942 166 166;166;166 0 85.652 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 14.5 7.8 0 25.3 23.5 25.3 7.8 7.8 7.8 7.8 0 7.8 259790000 0 0 0 18715000 10155000 0 88634000 55235000 47689000 9961800 7067500 15815000 0 0 6516200 0 0 0 7778500 0 0 8974400 9219200 7520000 0 0 0 0 0 0 0 0 0 0 1 0 4 2 3 1 0 1 1 0 0 13 SIAKELSGTVR;VTGGEVGAASSLAPK;VTVVPSAAALVIK;VTVVPSAAALVIKALK 110 354;469;473;474 True;True;True;True 365;483;487;488 4339;4340;4341;4342;4343;4344;4345;5771;5772;5773;5805;5806;5807;5808;5809;5810;5811;5812;5813;5814;5815;5816 2205;2206;2968;2969;2970;2982;2983;2984;2985;2986;2987;2988;2989;2990 2206;2969;2987;2989 -1;-1;-1 P51414 P51414 8 8 8 60S ribosomal protein L26-1 RPL26A sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2 1 8 8 8 7 7 7 6 6 4 8 7 7 5 7 6 6 6 6 7 7 7 6 6 4 8 7 7 5 7 6 6 6 6 7 7 7 6 6 4 8 7 7 5 7 6 6 6 6 40.4 40.4 40.4 16.944 146 146 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 33.6 33.6 33.6 33.6 33.6 22.6 40.4 33.6 33.6 26.7 33.6 33.6 33.6 33.6 33.6 4890500000 53879000 56445000 88281000 141980000 101220000 50270000 1037600000 859180000 668500000 207610000 298020000 443860000 372300000 203830000 307540000 25192000 19439000 15012000 25321000 25037000 21859000 49125000 48379000 44197000 46325000 35710000 29144000 43616000 42494000 45578000 3 1 1 5 3 2 10 13 9 3 1 4 4 4 7 70 AHFTASSSER;DDEVQIVR;DDEVQIVRGTYKGR;EKVNGTTVNVGIQPSK;ITREKVNGTTVNVGIQPSK;SMPIRKDDEVQIVR;VNGTTVNVGIQPSK;VVITKLRLDK 111 40;102;103;149;241;366;461;475 True;True;True;True;True;True;True;True 40;105;106;154;249;377;378;475;489 454;1162;1163;1164;1165;1166;1167;1168;1169;1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180;1181;1182;1183;1184;1185;1186;1187;1188;1189;1190;1191;1192;1193;1194;1195;1196;1197;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935;2936;2937;2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;5693;5694;5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707;5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828;5829 224;656;657;658;659;660;661;662;663;664;665;666;667;668;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033;1034;1035;1036;1037;1038;1039;1040;1041;1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471;1472;1473;2309;2310;2311;2312;2313;2314;2315;2316;2929;2930;2931;2932;2933;2934;2991;2992;2993 224;657;668;1027;1466;2311;2929;2993 21 47 -1 P51418;A0A1P8AY36;A8MRF3;Q8L7K0 P51418;A0A1P8AY36 5;3;1;1 5;3;1;1 4;2;0;0 60S ribosomal protein L18a-2 RPL18AB sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2;tr|A0A1P8AY36|A0A1P8AY36_ARATH Ribosomal protein L18ae/LX family protein OS=Arabidopsis thaliana OX=3702 GN=At2g34480 PE=1 SV=1 4 5 5 4 3 3 3 1 1 0 5 4 4 2 1 1 2 3 2 3 3 3 1 1 0 5 4 4 2 1 1 2 3 2 3 3 3 1 1 0 4 4 4 2 1 1 2 3 2 21.3 21.3 15.2 21.307 178 178;217;312;178 0 128.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 15.2 15.2 15.2 7.3 7.3 0 21.3 15.2 15.2 15.2 7.3 7.3 10.7 15.2 15.2 1579400000 22956000 35963000 79199000 12051000 9183900 0 538450000 401390000 369540000 12794000 13746000 14137000 23462000 18434000 28132000 3956400 5079400 17582000 1642700 1591300 0 30686000 28158000 28932000 1595800 1334900 0 2286000 3798600 3086400 1 1 6 0 0 0 9 7 7 0 0 0 1 0 1 33 ALPTEKDVQPK;ALPTEKDVQPKIYR;GAFRFHQYQVVGR;GAFRFHQYQVVGRALPTEK;TGYHNMYKEYR 112 48;49;172;173;393 True;True;True;True;True 50;51;178;179;406 565;566;567;568;569;570;571;572;573;574;575;576;577;578;579;580;581;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;4815 283;284;285;286;287;288;289;290;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145;1146;1147;1148;1149;1150;1151;1152;1153;1154;1155;1156;2419 283;290;1145;1151;2419 22 92 -1;-1;-1;-1 Q9FZH0;P51422;Q9LMK0;Q9C912 Q9FZH0;P51422;Q9LMK0;Q9C912 1;1;1;1 1;1;1;1 1;1;1;1 60S ribosomal protein L35a-2;60S ribosomal protein L35a-4;60S ribosomal protein L35a-1;60S ribosomal protein L35a-3 RPL35AB;RPL35AD;RPL35AA;RPL35AC sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1;sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2;sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9 9 9 12.799 111 111;111;112;112 0 19.175 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 228960000 4278000 6193000 16240000 9984900 7181100 1918100 82902000 30364000 27534000 5463500 6547100 14361000 5757600 3814100 6424400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 VRVFMYPSNI 113 466 True 480 5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757 2952;2953;2954 2952 23 106 -1;-1;-1;-1 P54609;Q9LZF6;Q9SCN8 P54609;Q9LZF6;Q9SCN8 1;1;1 1;1;1 1;1;1 Cell division control protein 48 homolog A;Cell division control protein 48 homolog E;Cell division control protein 48 homolog D CDC48A;CDC48E;CDC48D sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana OX=3702 GN=CDC48A PE=1 SV=1;sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana OX=3702 GN=CDC48E PE=2 SV=2;sp|Q9SCN8|CD48D_ARATH 3 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2.3 2.3 2.3 89.392 809 809;810;815 0 6.9111 By MS/MS By MS/MS 2.3 0 2.3 0 0 0 0 0 0 0 0 0 0 0 0 5939400 2525900 0 3413400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 RELQETVQYPVEHPEKFEK 114 333 True 344 4145;4146 2101 2101 -1;-1;-1 P56757 P56757 3 3 3 ATP synthase subunit alpha, chloroplastic atpA sp|P56757|ATPA_ARATH ATP synthase subunit alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpA PE=1 SV=1 1 3 3 3 3 3 3 2 3 3 3 3 3 3 3 2 3 3 3 3 3 3 2 3 3 3 3 3 3 3 2 3 3 3 3 3 3 2 3 3 3 3 3 3 3 2 3 3 3 5.5 5.5 5.5 55.328 507 507 0 51.148 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5.5 5.5 5.5 2.6 5.5 5.5 5.5 5.5 5.5 5.5 5.5 2.6 5.5 5.5 5.5 668350000 9286300 15749000 14121000 60632000 36345000 22777000 74468000 43647000 53648000 20257000 42946000 184470000 37122000 13619000 39265000 4146200 7314300 3541600 17442000 11376000 10548000 5066400 4209900 5648900 5634600 7690000 17141000 6957600 6150500 8222100 1 1 2 2 2 0 3 3 2 2 2 2 1 1 2 26 LIESPAPGIISR;LIESPAPGIISRR;VTIRADEISNIIRER 115 278;279;471 True;True;True 286;287;485 3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360;3361;3362;3363;3364;5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793 1652;1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;2972;2973;2974 1657;1674;2972 -1 P56759 P56759 3 3 3 ATP synthase subunit b, chloroplastic atpF sp|P56759|ATPF_ARATH ATP synthase subunit b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpF PE=3 SV=1 1 3 3 3 2 2 2 2 2 1 3 3 3 1 2 2 1 1 2 2 2 2 2 2 1 3 3 3 1 2 2 1 1 2 2 2 2 2 2 1 3 3 3 1 2 2 1 1 2 12.5 12.5 12.5 21.057 184 184 0 47.978 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7.1 7.1 7.1 7.1 7.1 7.1 12.5 12.5 12.5 7.1 7.1 7.1 5.4 7.1 7.1 782910000 20831000 19291000 18944000 56442000 39230000 12770000 131900000 107850000 128150000 15843000 49430000 149960000 1757300 4871700 25632000 18958000 17345000 11044000 17028000 14087000 0 15713000 12163000 19682000 0 10885000 19328000 0 0 8510400 2 2 2 1 2 0 3 1 3 0 1 2 0 0 1 20 EGAIQQLENAR;EGAIQQLENARAR;NVETEADKFR 116 135;136;308 True;True;True 140;141;319 1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;3668;3669;3670;3671 939;940;941;942;943;944;945;946;947;948;949;950;951;952;953;954;955;956;957;958;1818;1819 948;957;1818 -1 P56761 P56761 3 3 3 Photosystem II D2 protein psbD sp|P56761|PSBD_ARATH Photosystem II D2 protein OS=Arabidopsis thaliana OX=3702 GN=psbD PE=1 SV=3 1 3 3 3 2 3 2 3 3 3 2 3 3 3 3 3 3 3 3 2 3 2 3 3 3 2 3 3 3 3 3 3 3 3 2 3 2 3 3 3 2 3 3 3 3 3 3 3 3 3.4 3.4 3.4 39.547 353 353 0 45.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3.4 3.4 2.5 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.4 2157100000 6484800 11205000 6076200 59125000 49150000 23730000 65785000 124690000 111610000 199400000 276820000 481200000 395500000 78007000 268370000 0 9150200 0 22344000 11268000 11107000 7668700 13013000 14075000 43800000 44253000 39156000 62141000 90006000 54700000 0 1 1 1 2 1 3 3 3 3 3 3 2 1 3 30 TIALGK;TIALGKFTK;TIALGKFTKDEK 117 394;395;396 True;True;True 407;408;409 4816;4817;4818;4819;4820;4821;4822;4823;4824;4825;4826;4827;4828;4829;4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850;4851;4852;4853;4854;4855;4856;4857;4858;4859;4860;4861;4862;4863;4864;4865;4866 2420;2421;2422;2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444;2445;2446;2447;2448;2449;2450;2451;2452;2453 2422;2428;2442 -1 P56766 P56766 3 3 3 Photosystem I P700 chlorophyll a apoprotein A1 psaA sp|P56766|PSAA_ARATH Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabidopsis thaliana OX=3702 GN=psaA PE=2 SV=1 1 3 3 3 2 2 2 3 2 2 3 3 3 2 3 3 3 3 3 2 2 2 3 2 2 3 3 3 2 3 3 3 3 3 2 2 2 3 2 2 3 3 3 2 3 3 3 3 3 2.5 2.5 2.5 83.23 750 750 0 201.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 7438500000 119420000 178090000 123580000 438480000 334360000 248040000 330480000 424010000 395240000 647870000 883830000 1719400000 790570000 316040000 489100000 205300000 234660000 195580000 149260000 107440000 114600000 114210000 143230000 128110000 318090000 213100000 181510000 207010000 354120000 193730000 2 2 1 4 5 3 4 3 2 5 3 5 5 5 4 53 IIRSPEPEVK;ILVDRDPIK;SPEPEVKILVDRDPIK 118 224;228;369 True;True;True 232;236;381 2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786;2787;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542;4543;4544;4545;4546 1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359;1360;1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396;1404;1405;1406;1407;2325;2326;2327;2328 1362;1407;2325 -1 P56771 P56771 3 3 3 Cytochrome f petA sp|P56771|CYF_ARATH Cytochrome f OS=Arabidopsis thaliana OX=3702 GN=petA PE=3 SV=1 1 3 3 3 0 0 0 2 1 1 0 2 1 3 2 3 3 2 3 0 0 0 2 1 1 0 2 1 3 2 3 3 2 3 0 0 0 2 1 1 0 2 1 3 2 3 3 2 3 14.1 14.1 14.1 35.356 320 320 0 18.652 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 8.8 5 3.8 0 8.8 5.3 14.1 8.8 14.1 14.1 9.1 14.1 87485000 0 0 0 3790400 1431900 1501500 0 5243100 1753700 11023000 12771000 17070000 15690000 7124600 10085000 0 0 0 0 0 0 0 0 0 2412900 0 1384600 3211400 3628800 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 4 NILVIGPVPGQK;SNNTVYNATAGGIISK;YSEITFPILAPDPATNK 119 305;368;484 True;True;True 315;380;498 3633;3634;3635;3636;3637;3638;3639;3640;3641;4520;4521;4522;4523;4524;4525;4526;4527;5895;5896;5897;5898;5899;5900 1800;2324;3020;3021 1800;2324;3020 -1 P56774 P56774 1 1 1 Cytochrome b6-f complex subunit 4 petD sp|P56774|PETD_ARATH Cytochrome b6-f complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=petD PE=3 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.8 8.8 8.8 17.431 160 160 0 16.784 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 8.8 364560000 6955400 12482000 26736000 22421000 11478000 4965500 35695000 79189000 72087000 24484000 17704000 25546000 11759000 3112500 9946800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 4 GVTKKPDLNDPVLR 120 198 True 205 2444;2445;2446;2447;2448;2449;2450;2451;2452;2453;2454;2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465 1232;1233;1234;1235;1236;1237 1236 -1 P56778 P56778 6 6 6 Photosystem II CP43 reaction center protein psbC sp|P56778|PSBC_ARATH Photosystem II CP43 reaction center protein OS=Arabidopsis thaliana OX=3702 GN=psbC PE=1 SV=3 1 6 6 6 2 3 2 5 3 2 4 5 5 4 6 6 5 4 6 2 3 2 5 3 2 4 5 5 4 6 6 5 4 6 2 3 2 5 3 2 4 5 5 4 6 6 5 4 6 12.1 12.1 12.1 51.867 473 473 0 69.707 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4.9 6.8 4.9 10.4 5.1 4.9 7 8.7 8.7 6.1 12.1 12.1 9.5 7.6 12.1 950840000 5936500 7132400 4769400 24918000 13417000 5102300 128820000 146920000 152940000 31043000 65575000 128810000 117550000 28485000 89416000 3302400 3779700 2263400 4463400 3367500 4241800 9639800 11530000 11121000 4893100 4671800 6103200 8976200 10376000 13848000 0 0 0 1 0 0 3 4 5 0 1 3 2 1 5 25 AAAAGFEKGIDR;APWLEPLRGPNGLDLSR;DIQPWQERR;GPNGLDLSRLK;GPNGLDLSRLKK;LGANVGSAQGPTGLGK 121 0;57;112;191;192;269 True;True;True;True;True;True 0;60;116;198;199;277 0;1;2;3;4;5;6;7;8;9;10;11;12;13;14;660;661;662;663;664;665;666;667;1359;1360;1361;1362;1363;1364;1365;1366;1367;1368;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388;2389;2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;3216;3217;3218;3219;3220;3221 0;1;2;3;4;5;315;316;317;762;763;764;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213;1214;1215;1216;1612;1613 0;315;762;1209;1216;1613 -1 P56780 P56780 3 3 3 Photosystem II reaction center protein H psbH sp|P56780|PSBH_ARATH Photosystem II reaction center protein H OS=Arabidopsis thaliana OX=3702 GN=psbH PE=1 SV=2 1 3 3 3 2 2 2 3 3 2 2 3 3 2 3 3 3 1 3 2 2 2 3 3 2 2 3 3 2 3 3 3 1 3 2 2 2 3 3 2 2 3 3 2 3 3 3 1 3 42.5 42.5 42.5 7.7018 73 73 0 146.1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 27.4 27.4 27.4 42.5 42.5 27.4 27.4 42.5 42.5 27.4 42.5 42.5 42.5 19.2 42.5 2365800000 14125000 15963000 12697000 109870000 105300000 93108000 217040000 102150000 98078000 138120000 302910000 539050000 336470000 5297800 275610000 4659700 6236200 3889800 16465000 29010000 47258000 7473900 7521700 9724200 40486000 43691000 37477000 60019000 9032900 53300000 0 1 1 5 5 3 3 4 5 4 8 15 9 0 14 77 ATQTVEDSSRSGPR;ATQTVEDSSRSGPRSTTVGK;STTVGKLLKPLNSEYGK 122 86;87;377 True;True;True 89;90;389 956;957;958;959;960;961;962;963;964;965;966;967;968;969;970;971;972;973;974;975;976;977;978;979;980;981;982;983;984;985;986;987;988;989;990;991;992;993;994;995;996;997;998;999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021;1022;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033;1034;1035;1036;1037;1038;1039;1040;1041;1042;1043;1044;1045;1046;1047;1048;1049;1050;4631;4632;4633;4634;4635;4636;4637;4638 512;513;514;515;516;517;518;519;520;521;522;523;524;525;526;527;528;529;530;531;532;533;534;535;536;537;538;539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571;572;573;574;575;576;577;578;579;580;581;582;583;584;585;586;587;588;589;2358 537;584;2358 -1 P56791 P56791 3 3 3 50S ribosomal protein L2, chloroplastic rpl2-A sp|P56791|RK2_ARATH 50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl2-A PE=3 SV=1 1 3 3 3 2 3 3 1 1 0 3 3 2 2 2 3 0 2 1 2 3 3 1 1 0 3 3 2 2 2 3 0 2 1 2 3 3 1 1 0 3 3 2 2 2 3 0 2 1 9.5 9.5 9.5 29.864 274 274 0 64.965 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9.5 9.5 9.5 4.4 4.4 0 9.5 9.5 5.1 8.4 5.1 9.5 0 5.1 4 186740000 8137500 10560000 12628000 4620100 2668600 0 49230000 40475000 20016000 4779800 5237500 22980000 0 2774000 2636700 3933600 5092100 3645200 0 0 0 4430700 5316200 3214100 2598900 1499000 1886300 0 1942300 0 0 2 1 0 0 0 3 2 1 0 0 1 0 0 0 10 AAGAVAKLIAK;AAGAVAKLIAKEGK;SATLKLPSGEVR 123 7;8;346 True;True;True 7;8;357 92;93;94;95;96;97;98;99;100;101;102;103;104;105;106;107;108;109;110;4287;4288;4289;4290;4291;4292;4293;4294;4295 74;75;76;77;78;79;80;81;2179;2180 76;79;2179 -1 P56793 P56793 2 2 2 50S ribosomal protein L16, chloroplastic rpl16 sp|P56793|RK16_ARATH 50S ribosomal protein L16, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl16 PE=3 SV=1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 19.3 19.3 19.3 15.294 135 135 0 25.716 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 19.3 19.3 19.3 11.1 11.1 11.1 19.3 19.3 19.3 19.3 19.3 11.1 19.3 19.3 19.3 492380000 11928000 16397000 16913000 16492000 17723000 4404700 92183000 97607000 84621000 12502000 18426000 52120000 19423000 10550000 21092000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 0 1 11 IFPDKPVTVRPAETR;MPIKTQFIISE 124 206;300 True;True 213;310 2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615 1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1795 1283;1795 24 125 -1 P56798 P56798 1 1 1 30S ribosomal protein S3, chloroplastic rps3 sp|P56798|RR3_ARATH 30S ribosomal protein S3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps3 PE=3 SV=1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 4.6 4.6 4.6 25.188 218 218 0 6.5054 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 4.6 4.6 4.6 4.6 0 4.6 4.6 4.6 4.6 0 4.6 4.6 4.6 0 4.6 67090000 3559000 4165300 4995300 5170400 0 1260400 14686000 7677600 10744000 0 2767200 5784400 3363900 0 2916500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 GQKINPLGFR 125 195 True 202 2413;2414;2415;2416;2417;2418;2419;2420;2421;2422;2423;2424 1224;1225 1225 -1 P56807 P56807 3 3 3 30S ribosomal protein S18, chloroplastic rps18 sp|P56807|RR18_ARATH 30S ribosomal protein S18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps18 PE=3 SV=1 1 3 3 3 1 2 2 1 1 0 3 2 2 0 0 0 0 0 1 1 2 2 1 1 0 3 2 2 0 0 0 0 0 1 1 2 2 1 1 0 3 2 2 0 0 0 0 0 1 21.8 21.8 21.8 12.06 101 101 0 75.918 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15.8 21.8 21.8 15.8 15.8 0 21.8 15.8 15.8 0 0 0 0 0 15.8 213440000 8954000 13298000 27835000 4161700 1749200 0 79856000 36254000 38254000 0 0 0 0 0 3080400 0 8317100 15521000 0 0 0 8522100 7655700 10492000 0 0 0 0 0 0 0 1 1 0 0 0 2 2 1 0 0 0 0 0 0 7 ILSLLPFLNNQK;ILSLLPFLNNQKQFER;ILSLLPFLNNQKQFERSESTPR 126 225;226;227 True;True;True 233;234;235 2761;2762;2763;2764;2765;2766;2767;2768;2769;2770;2771;2772;2773;2774;2775 1397;1398;1399;1400;1401;1402;1403 1397;1401;1403 -1 P59224;P59223 P59224;P59223 3;3 3;3 3;3 40S ribosomal protein S13-2;40S ribosomal protein S13-1 RPS13B;RPS13A sp|P59224|RS132_ARATH 40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1;sp|P59223|RS131_ARATH 40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1 2 3 3 3 1 2 2 1 1 0 3 3 2 0 0 0 0 0 0 1 2 2 1 1 0 3 3 2 0 0 0 0 0 0 1 2 2 1 1 0 3 3 2 0 0 0 0 0 0 29.8 29.8 29.8 17.085 151 151;151 0 44.505 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 9.9 21.2 18.5 9.9 9.9 0 29.8 29.8 21.2 0 0 0 0 0 0 201690000 898090 2426600 6637300 2140700 2668300 0 65565000 63553000 57797000 0 0 0 0 0 0 0 2812500 4415000 0 0 0 6178800 4100900 5482700 0 0 0 0 0 0 0 0 1 0 0 0 5 3 1 0 0 0 0 0 0 10 AHGLAPEIPEDLYHLIK;DSHGIPQVKSVTGSK;KGLTPSQIGVILR 127 41;121;247 True;True;True 41;126;255 455;456;457;458;459;460;461;1476;1477;1478;1479;1480;1481;1482;1483;2984;2985;2986 225;226;227;228;229;230;799;1495;1496;1497 229;799;1497 -1;-1 P59230;Q8VZB9;P59231 P59230;Q8VZB9;P59231 3;3;2 3;3;2 3;3;2 60S ribosomal protein L10a-2;60S ribosomal protein L10a-1;60S ribosomal protein L10a-3 RPL10AB;RPL10AA;RPL10AC sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1;sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1;sp|P59231|R10A3_ARATH 60S ribosomal protein L10a 3 3 3 3 1 2 1 2 2 2 3 3 3 1 1 1 2 0 2 1 2 1 2 2 2 3 3 3 1 1 1 2 0 2 1 2 1 2 2 2 3 3 3 1 1 1 2 0 2 12.5 12.5 12.5 24.425 216 216;216;217 0 27.236 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 4.2 7.9 3.7 7.9 7.9 7.9 12.5 12.5 12.5 4.2 4.2 4.2 7.9 0 7.9 682910000 6623200 10113000 1561800 21447000 12832000 8095600 204260000 158020000 135770000 9463000 17708000 33797000 31159000 0 32069000 0 8324500 0 9903800 8796100 8886200 14978000 25198000 13767000 0 0 0 9099900 0 10933000 0 1 0 0 1 1 2 2 2 0 1 1 0 0 1 12 LLGPGLNK;SKLQSEAVR;STMGPPQRIF 128 283;357;376 True;True;True 291;368;388 3392;3393;3394;3395;3396;3397;3398;3399;3400;3401;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411;4628;4629;4630 1686;2265;2266;2267;2268;2269;2270;2271;2272;2273;2356;2357 1686;2273;2356 25 209 -1;-1;-1 P59259;A8MRV1 P59259 3;1 3;1 3;1 Histone H4 sp|P59259|H4_ARATH Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2 2 3 3 3 2 3 3 3 3 2 3 3 3 2 2 3 2 3 2 2 3 3 3 3 2 3 3 3 2 2 3 2 3 2 2 3 3 3 3 2 3 3 3 2 2 3 2 3 2 22.3 22.3 22.3 11.409 103 103;86 0 20.313 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 22.3 22.3 22.3 22.3 22.3 21.4 22.3 22.3 22.3 21.4 21.4 22.3 21.4 22.3 21.4 997220000 22317000 25162000 45760000 55761000 38042000 19916000 174530000 137210000 106240000 37313000 62946000 172760000 38106000 13887000 47274000 0 18212000 13733000 22669000 19047000 0 16954000 25343000 10189000 0 0 32699000 0 16408000 14468000 0 0 0 0 0 0 0 3 0 0 0 2 0 0 1 6 DNIQGITKPAIR;DNIQGITKPAIRR;QGRTLYGFGG 129 117;118;323 True;True;True 122;123;334 1425;1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453;4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092 784;785;786;787;788;789;2076;2077;2078;2079;2080;2081;2082;2083;2084 784;788;2077 -1;-1 P61841 P61841 3 3 3 30S ribosomal protein S7, chloroplastic rps7-A sp|P61841|RR7_ARATH 30S ribosomal protein S7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps7-A PE=1 SV=1 1 3 3 3 3 3 3 3 2 2 3 3 3 2 2 2 1 0 2 3 3 3 3 2 2 3 3 3 2 2 2 1 0 2 3 3 3 3 2 2 3 3 3 2 2 2 1 0 2 15.5 15.5 15.5 17.357 155 155 0 169.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 15.5 15.5 15.5 15.5 14.8 14.8 15.5 15.5 15.5 14.8 14.8 14.8 14.8 0 14.8 377230000 13483000 17598000 26173000 38777000 22537000 8405000 58891000 54882000 47181000 9495100 15977000 42818000 5470900 0 15539000 7336500 9153200 7639000 9498600 6900000 5379900 4711500 5414400 5030700 3346700 3569700 4251800 0 0 4555000 1 2 5 4 0 1 3 4 2 1 1 0 0 0 2 26 RVGGSTHQVPIEIGSTQGKALAIR;VGGSTHQVPIEIGSTQGK;VGGSTHQVPIEIGSTQGKALAIR 130 344;443;444 True;True;True 355;457;458 4275;4276;4277;4278;4279;4280;4281;5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520;5521;5522;5523;5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534;5535;5536;5537;5538;5539;5540 2176;2177;2854;2855;2856;2857;2858;2859;2860;2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877 2176;2858;2872 -1 P61845 P61845 1 1 1 50S ribosomal protein L23, chloroplastic rpl23-A sp|P61845|RK23_ARATH 50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl23-A PE=3 SV=1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 12.9 12.9 12.9 10.789 93 93 0 34.993 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12.9 12.9 12.9 12.9 0 0 12.9 12.9 12.9 12.9 12.9 12.9 12.9 12.9 12.9 433540000 9769400 11165000 28288000 11183000 0 0 117290000 78679000 64382000 7739000 11750000 28643000 20139000 10992000 33516000 6208300 8274400 10152000 0 0 0 14702000 12487000 11387000 0 0 3670300 4595600 6915600 11032000 1 1 0 1 0 0 2 2 2 1 1 1 1 0 2 15 MDGIKYAVFTDK 131 293 True 301 3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510;3511;3512;3513;3514;3515 1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759 1757 26 1 -1 P61847 P61847 2 2 2 50S ribosomal protein L32, chloroplastic rpl32 sp|P61847|RK32_ARATH 50S ribosomal protein L32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl32 PE=3 SV=2 1 2 2 2 2 2 2 2 2 0 2 2 2 1 2 1 1 2 2 2 2 2 2 2 0 2 2 2 1 2 1 1 2 2 2 2 2 2 2 0 2 2 2 1 2 1 1 2 2 42.3 42.3 42.3 6.0612 52 52 0 113.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 42.3 42.3 42.3 42.3 42.3 0 42.3 42.3 42.3 30.8 42.3 30.8 30.8 42.3 42.3 614600000 38104000 46140000 80828000 34214000 16945000 0 137230000 75828000 84783000 11659000 14713000 17415000 21262000 13705000 21769000 17364000 31032000 36183000 7431600 5573300 0 8772400 7258300 7604300 0 3078500 0 0 6069900 4612600 2 2 2 1 1 0 2 3 2 0 0 1 1 1 0 18 AFSLGKSLSTGNSKSFFVQQNK;SLSTGNSKSFFVQQNK 132 29;363 True;True 29;374 346;347;348;349;350;351;352;353;354;355;356;357;358;359;360;361;362;363;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451 177;178;179;180;181;182;183;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300 180;2289 -1 P62090 P62090 1 1 1 Photosystem I iron-sulfur center psaC sp|P62090|PSAC_ARATH Photosystem I iron-sulfur center OS=Arabidopsis thaliana OX=3702 GN=psaC PE=3 SV=2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.4 7.4 7.4 9.0384 81 81 1 -2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 390030000 4943900 6186800 11349000 34798000 24900000 8006200 56914000 35555000 31223000 13601000 25342000 74503000 23382000 5662200 33658000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 SMGLAY + 133 365 True 376 4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475 2308 2308 27 77 -1 P62095 P62095 1 1 1 Cytochrome b559 subunit beta psbF sp|P62095|PSBF_ARATH Cytochrome b559 subunit beta OS=Arabidopsis thaliana OX=3702 GN=psbF PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.8 30.8 30.8 4.4242 39 39 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 30.8 9623200000 69461000 11802000 34720000 11280000 383970000 160300000 769400000 820070000 988730000 772550000 1615800000 2172900000 1189100000 595330000 27784000 61302000 0 22644000 0 0 0 108340000 0 204670000 410370000 594750000 361820000 449920000 384570000 0 0 0 0 7 4 2 13 11 16 8 23 27 18 9 3 141 TIDRTYPIFTVR 134 398 True 411 4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900;4901;4902;4903;4904;4905;4906;4907;4908;4909;4910;4911;4912;4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936;4937;4938;4939;4940;4941;4942;4943;4944;4945;4946;4947;4948;4949;4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960;4961;4962;4963;4964;4965;4966;4967;4968;4969;4970;4971;4972;4973;4974;4975;4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001 2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528;2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540;2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577;2578;2579;2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598 2557 -1 P62126 P62126 1 1 1 30S ribosomal protein S12, chloroplastic rps12-A sp|P62126|RR12_ARATH 30S ribosomal protein S12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps12-A PE=2 SV=2 1 1 1 1 0 0 0 1 0 0 1 1 1 0 1 1 1 1 1 0 0 0 1 0 0 1 1 1 0 1 1 1 1 1 0 0 0 1 0 0 1 1 1 0 1 1 1 1 1 6.5 6.5 6.5 13.764 123 123 0 6.6662 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 6.5 0 0 6.5 6.5 6.5 0 6.5 6.5 6.5 6.5 6.5 119720000 0 0 0 9736800 0 0 22039000 21512000 21799000 0 6714900 20919000 6615800 3291400 7092700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 3 PTIKQLIR 135 319 True 330 4047;4048;4049;4050;4051;4052;4053;4054;4055 2067;2068;2069;2070 2068 -1 P92959;F4K1S8 P92959;F4K1S8 2;1 2;1 2;1 50S ribosomal protein L24, chloroplastic RPL24;At5g54600 sp|P92959|RK24_ARATH 50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL24 PE=2 SV=2;tr|F4K1S8|F4K1S8_ARATH Translation protein SH3-like family protein OS=Arabidopsis thaliana OX=3702 GN=RPL24 PE=1 SV=1 2 2 2 2 1 2 2 2 1 1 2 2 2 1 1 2 1 2 1 1 2 2 2 1 1 2 2 2 1 1 2 1 2 1 1 2 2 2 1 1 2 2 2 1 1 2 1 2 1 15.2 15.2 15.2 21.976 198 198;179 0 95.938 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8.6 15.2 15.2 15.2 8.6 8.6 15.2 15.2 15.2 8.6 8.6 15.2 8.6 15.2 8.6 689570000 15097000 19858000 19671000 32287000 14822000 5052100 196070000 106890000 92083000 25628000 28833000 50887000 32083000 18698000 31612000 7751300 8660200 5816100 7323300 5605300 3729400 20763000 15356000 8387700 7080300 5771000 5179400 6485200 8789500 7091300 0 0 0 0 0 0 5 2 0 0 0 1 0 0 1 9 IGEVTKIFTHNSTIVIK;VGHKVLEDGQKVR 136 212;445 True;True 219;459 2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;5541;5542;5543;5544;5545;5546;5547;5548;5549;5550;5551;5552;5553;5554 1301;1302;1303;1304;1305;1306;2878;2879;2880;2881 1306;2880 -1;-1 P93014 P93014 2 2 2 30S ribosomal protein S5, chloroplastic rps5 sp|P93014|RR5_ARATH 30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1 1 2 2 2 1 0 0 1 1 0 2 2 2 1 0 2 0 1 1 1 0 0 1 1 0 2 2 2 1 0 2 0 1 1 1 0 0 1 1 0 2 2 2 1 0 2 0 1 1 11.6 11.6 11.6 32.645 303 303 0 54.171 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 6.3 0 0 5.3 6.3 0 11.6 11.6 11.6 6.3 0 11.6 0 6.3 5.3 143250000 1820000 0 0 8119200 4508500 0 26523000 28457000 32526000 6052200 0 27118000 0 1786500 6341000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 5 VMLRPASPGTGVIAGGAVR;YSTFPHRSEGDYGAAK 137 460;486 True;True 474;500 5685;5686;5687;5688;5689;5690;5691;5692;5915;5916;5917;5918;5919;5920 2924;2925;2926;2927;2928;3024 2927;3024 28 232 -1 Q0WPH4 Q0WPH4 1 1 1 At2g21840 tr|Q0WPH4|Q0WPH4_ARATH Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN=At2g21840 PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1.7 1.7 1.7 88.948 769 769 0.008547 5.8573 By MS/MS 0 0 0 0 0 0 0 0 1.7 0 0 0 0 0 0 1095400 0 0 0 0 0 0 0 0 1095400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 IIGTWLGLCIQDK 138 220 True 228 2721 1343 1343 -1 Q0WWE3 Q0WWE3 1 1 1 Cytochrome b-c1 complex subunit 6 At1g15120 sp|Q0WWE3|QCR61_ARATH Cytochrome b-c1 complex subunit 6-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR6-1 PE=1 SV=1 1 1 1 1 0 0 0 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 1 0 1 1 1 0 1 1 1 1 0 1 14.5 14.5 14.5 7.9832 69 69 0 18.998 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 14.5 0 14.5 14.5 14.5 0 14.5 14.5 14.5 14.5 0 14.5 66910000 0 0 0 711340 0 3672800 2809300 3621100 0 7456300 8485500 25856000 8399300 0 5898000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 2 0 1 7 ADDEVVDPKK 139 11 True 11 144;145;146;147;148;149;150;151;152 86;87;88;89;90;91;92 88 -1 Q2V3P9;Q9FT52 Q2V3P9;Q9FT52 1;1 1;1 1;1 ATP synthase subunit d, mitochondrial ATPQ tr|Q2V3P9|Q2V3P9_ARATH ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATPQ PE=1 SV=1;sp|Q9FT52|ATP5H_ARATH ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g52300 PE=1 SV=3 2 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 10.7 10.7 10.7 13.827 122 122;168 0 6.4247 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10.7 10.7 10.7 0 0 0 10.7 10.7 10.7 0 0 0 0 0 10.7 123190000 4381400 3428800 10370000 0 0 0 43477000 28806000 25743000 0 0 0 0 0 6987000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 SGAGKKIADVAFK 140 350 True 361 4319;4320;4321;4322;4323;4324;4325 2199 2199 -1;-1 Q2V3X4;Q9SF40 Q2V3X4;Q9SF40 7;7 7;7 4;4 60S ribosomal protein L4-1 At3g09630;RPL4A tr|Q2V3X4|Q2V3X4_ARATH Ribosomal protein L4/L1 family OS=Arabidopsis thaliana OX=3702 GN=At3g09630 PE=1 SV=1;sp|Q9SF40|RL4A_ARATH 60S ribosomal protein L4-1 OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1 2 7 7 4 1 1 2 3 1 0 7 7 6 0 0 1 0 1 2 1 1 2 3 1 0 7 7 6 0 0 1 0 1 2 0 1 1 3 1 0 4 4 3 0 0 1 0 1 2 14.1 14.1 8.9 44.572 405 405;406 0 323.31 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2.5 3.2 5.7 7.9 3.2 0 14.1 14.1 14.1 0 0 4.7 0 3.2 7.9 339610000 770120 915050 4017800 4495700 1011500 0 134170000 103260000 76880000 0 0 4520100 0 1430100 8140100 0 0 2631700 2640200 0 0 5431900 5168300 4305300 0 0 0 0 0 0 0 0 0 0 0 0 6 3 2 0 0 0 0 0 0 11 IINSDEIQSVVNPIKK;IINSDEIQSVVNPIKKDAK;KGPLVVYGTEGSK;QIGAYDDAEK;QIGAYDDAEKAK;TSAAIKVLKQIGAYDDAEK;YISRKGPLVVYGTEGSK 141 221;222;250;324;325;411;482 True;True;True;True;True;True;True 229;230;258;335;336;424;496 2722;2723;2724;2725;2726;2727;2728;2729;2730;2995;2996;2997;2998;2999;3000;3001;3002;3003;3004;3005;3006;3007;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;5136;5137;5138;5863;5864;5865 1344;1345;1346;1501;1502;1503;2085;2086;2087;2088;2089;2662;3006 1344;1345;1501;2085;2088;2662;3006 -1;-1 Q38820 Q38820 1 1 1 Mitochondrial import inner membrane translocase subunit TIM23-2 TIM23-2 sp|Q38820|TI232_ARATH Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 5.9 5.9 5.9 19.878 188 188 0 7.5124 By MS/MS By MS/MS 0 0 0 5.9 0 0 0 0 5.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 2 SFESGDTTKLK 142 348 True 359 4302;4303 2183;2184 2183 -1 Q38842 Q38842 2 2 2 ATOZI1 tr|Q38842|Q38842_ARATH AT0ZI1 protein OS=Arabidopsis thaliana OX=3702 GN=ATOZI1 PE=1 SV=1 1 2 2 2 0 0 0 0 1 1 0 0 1 1 1 2 1 0 1 0 0 0 0 1 1 0 0 1 1 1 2 1 0 1 0 0 0 0 1 1 0 0 1 1 1 2 1 0 1 32.5 32.5 32.5 8.6058 80 80 0 22.996 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 0 16.2 16.2 0 0 16.2 16.2 16.2 32.5 16.2 0 16.2 48770000 0 0 0 0 2342800 2805100 0 0 3765700 6451700 7463400 18892000 4460700 0 2589000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 2 LFGGTTPGTITNK;VAGPPVVMNPISR 143 268;422 True;True 276;435 3208;3209;3210;3211;3212;3213;3214;3215;5242 1610;1611;2708 1610;2708 29 65 -1 Q38865 Q38865 2 2 2 Expansin-A6 EXPA6 sp|Q38865|EXPA6_ARATH Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2 1 2 2 2 1 2 1 1 1 2 1 1 1 2 2 2 2 1 1 1 2 1 1 1 2 1 1 1 2 2 2 2 1 1 1 2 1 1 1 2 1 1 1 2 2 2 2 1 1 9.7 9.7 9.7 27.817 257 257 0 11.848 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4.7 9.7 4.7 4.7 4.7 9.7 4.7 4.7 4.7 9.7 9.7 9.7 9.7 4.7 4.7 211900000 7342500 12144000 18405000 8879700 8745700 2896100 42851000 13985000 26895000 8257800 11326000 30256000 10082000 2569300 7265700 0 0 0 0 0 0 0 0 0 0 1996000 2620400 0 0 0 0 0 0 0 0 0 2 1 1 0 1 1 0 0 1 7 FGQTFMGKNFRV;SSTSWNIAPANWK 144 164;375 True;True 169;170;387 2034;2035;2036;2037;2038;2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049;2050;2051;2052;2053;2054;2055;2056;4622;4623;4624;4625;4626;4627 1089;1090;1091;1092;1093;1094;1095;2355 1095;2355 30 251 -1 Q41932 Q41932 1 1 1 Oxygen-evolving enhancer protein 3-2, chloroplastic PSBQ2 sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 7.8 7.8 7.8 24.643 230 230 0 32.283 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 7.8 7.8 7.8 0 0 0 7.8 7.8 7.8 0 0 0 0 0 7.8 38302000 3718300 2493500 4908000 0 0 0 10479000 3549700 11093000 0 0 0 0 0 2060600 1687100 0 1558000 0 0 0 1140800 0 1332000 0 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 4 DRFYIQPLSPTEAAARAK 145 119 True 124 1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464 790;791;792;793 791 -1 Q42029 Q42029 5 5 5 Oxygen-evolving enhancer protein 2-1, chloroplastic PSBP1 sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBP1 PE=1 SV=2 1 5 5 5 5 5 5 0 0 0 4 4 5 1 1 1 1 0 1 5 5 5 0 0 0 4 4 5 1 1 1 1 0 1 5 5 5 0 0 0 4 4 5 1 1 1 1 0 1 19.4 19.4 19.4 28.095 263 263 0 58.301 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 19.4 19.4 19.4 0 0 0 19.4 19.4 19.4 4.2 4.2 4.2 4.2 0 4.2 527690000 35190000 36344000 30826000 0 0 0 50772000 23348000 62576000 13665000 61133000 178460000 31589000 0 3786700 9097100 7790300 7886900 0 0 0 3153000 3484100 3909900 0 0 0 0 0 0 1 3 0 0 0 0 4 0 6 1 1 2 1 0 0 19 GARKFVESAATSFSVA;KFVESAATSFSVA;TNTDFLPYNGDGFK;VQVPAKWNPSK;VQVPAKWNPSKEIEYPGQVLR 146 176;246;404;464;465 True;True;True;True;True 182;254;417;478;479 2220;2221;2222;2223;2224;2225;2978;2979;2980;2981;2982;2983;5062;5063;5064;5065;5066;5067;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742 1167;1168;1493;1494;2637;2937;2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951 1167;1494;2637;2940;2951 -1 Q42064 Q42064 7 2 2 60S ribosomal protein L8-3 RPL8C sp|Q42064|RL83_ARATH 60S ribosomal protein L8-3 OS=Arabidopsis thaliana OX=3702 GN=RPL8C PE=2 SV=2 1 7 2 2 5 5 5 3 3 1 7 7 7 3 2 2 2 2 2 0 1 0 0 0 0 2 2 2 0 0 0 0 0 0 0 1 0 0 0 0 2 2 2 0 0 0 0 0 0 30.6 10.5 10.5 27.948 258 258 0 13.442 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 20.2 27.5 20.2 14.7 8.1 4.7 30.6 30.6 30.6 14.7 7.8 7.8 7.8 11.6 11.6 47968000 0 1073600 0 0 0 0 20013000 14495000 12386000 0 0 0 0 0 0 0 0 0 0 0 0 1894400 0 1724000 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 ASGDYAIVIAHNPDNDTSR;ASGDYAIVIAHNPDNDTSRIKLPSGSK;ATLVVGNVLPLR;GPAKFRSLDFGER;GVVTEIIHDPGRGAPLAR;KATLVVGNVLPLR;VGLIAARR 147 64;65;84;188;199;244;449 True;True;False;False;False;False;False 67;68;87;195;206;252;463 727;728;729;730;731;732;733;935;936;937;938;939;940;941;942;943;944;945;946;947;948;949;2350;2351;2352;2353;2354;2355;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2968;2969;2970;2971;2972;2973;2974;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614 374;375;495;496;497;498;499;500;501;502;503;504;505;506;507;508;1198;1199;1200;1201;1238;1239;1240;1241;1242;1243;1244;1488;1489;1490;1491;2894;2895 374;375;506;1200;1242;1489;2894 -1 Q9FDZ9;Q43291 Q9FDZ9;Q43291 2;2 2;2 2;2 60S ribosomal protein L21-2;60S ribosomal protein L21-1 RPL21E;RPL21A sp|Q9FDZ9|RL212_ARATH 60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1;sp|Q43291|RL211_ARATH 60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2 2 2 2 2 1 1 2 1 0 0 2 2 2 1 1 1 1 1 1 1 1 2 1 0 0 2 2 2 1 1 1 1 1 1 1 1 2 1 0 0 2 2 2 1 1 1 1 1 1 6.7 6.7 6.7 18.709 164 164;164 0 15.723 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4.9 4.9 6.7 4.9 0 0 6.7 6.7 6.7 4.9 4.9 4.9 4.9 4.9 4.9 126760000 915720 1272700 3448800 2623800 0 0 31258000 28271000 23435000 5142100 4279500 7199000 8565600 2129800 8219800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 5 TFKVGDYVDVK;VGDYVDVK 148 384;437 True;True 397;451 4714;4715;4716;4717;4718;4719;5457;5458;5459;5460;5461;5462;5463;5464;5465;5466;5467;5468;5469 2385;2386;2387;2388;2389;2838 2385;2838 -1;-1 Q8LEM8;Q43292 Q8LEM8;Q43292 1;1 1;1 1;1 60S ribosomal protein L37-3;60S ribosomal protein L37-2 RPL37C;RPL37B sp|Q8LEM8|RL373_ARATH 60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1;sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2 2 1 1 1 0 1 1 0 0 1 1 1 1 1 0 1 0 0 0 0 1 1 0 0 1 1 1 1 1 0 1 0 0 0 0 1 1 0 0 1 1 1 1 1 0 1 0 0 0 12.6 12.6 12.6 10.771 95 95;95 0 27.62 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 0 12.6 12.6 0 0 12.6 12.6 12.6 12.6 12.6 0 12.6 0 0 0 41538000 0 202740 929960 0 0 4771500 15231000 5520600 2807300 3412500 0 8663000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 TGFREGTEAKPR 149 389 True 402 4777;4778;4779;4780;4781;4782;4783;4784 2411 2411 -1;-1 Q5PNU4 Q5PNU4 1 1 1 B3 domain-containing protein At2g35310 sp|Q5PNU4|Y2531_ARATH B3 domain-containing protein At2g35310 OS=Arabidopsis thaliana OX=3702 GN=At2g35310 PE=2 SV=1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 6.6 6.6 6.6 33.214 288 288 0 7.0345 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 0 0 0 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 0 6.6 6.6 6.6 184130000 0 0 0 8621700 6605900 4649900 18602000 25438000 9266100 18687000 38734000 0 22931000 9928200 20665000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 1 0 1 5 ESAGASSSSVAEFSMFIKK 150 155 True 160 1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979 1067;1068;1069;1070;1071 1067 -1 Q66GI5 Q66GI5 1 1 1 At1g12570 tr|Q66GI5|Q66GI5_ARATH At1g12570 OS=Arabidopsis thaliana OX=3702 GN=At1g12570 PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 2.6 2.6 2.6 62 572 572 0 22.1 By MS/MS By MS/MS By MS/MS By matching 0 0 0 0 0 0 2.6 2.6 0 0 0 2.6 0 0 2.6 30285000 0 0 0 0 0 0 5977700 6199700 0 0 0 12182000 0 0 5925900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 VLGGGSALNAGFYTR 151 458 True 472 5669;5670;5671;5672 2920;2921 2920 -1 Q680B7 Q680B7 1 1 1 At2g14690 sp|Q680B7|XYN4_ARATH Endo-1,4-beta-xylanase 4 OS=Arabidopsis thaliana OX=3702 GN=XYN4 PE=2 SV=1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 1 2.3 2.3 2.3 64.944 570 570 0.0086207 5.8692 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2.3 0 0 0 0 0 0 2.3 0 0 2.3 2.3 2.3 0 2.3 100150000 4673500 0 0 0 0 0 0 15886000 0 0 15237000 29999000 19467000 0 14892000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 DFKNTQAGDLIDK 152 104 True 107 1198;1199;1200;1201;1202;1203 669 669 -1 Q680P8 Q680P8 1 1 1 40S ribosomal protein S29 RPS29A sp|Q680P8|RS29_ARATH 40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2 1 1 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 21.4 21.4 21.4 6.4294 56 56 0 14.786 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 21.4 21.4 21.4 21.4 0 0 21.4 21.4 21.4 0 0 0 0 0 0 146410000 11455000 14902000 18878000 0 0 0 40060000 27981000 33135000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 7 SNAKEIGFIKYR 153 367 True 379 4513;4514;4515;4516;4517;4518;4519 2317;2318;2319;2320;2321;2322;2323 2322 -1 Q6DYC8 Q6DYC8 1 1 1 At3g51230 tr|Q6DYC8|Q6DYC8_ARATH Chalcone-flavanone isomerase family protein OS=Arabidopsis thaliana OX=3702 GN=At3g51230 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 6.3 6.3 6.3 21.017 191 191 0 7.5682 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 0 6.3 1625000000 97031000 77538000 156590000 55519000 43589000 22225000 121490000 232270000 142690000 18861000 36383000 182550000 254350000 0 183910000 0 0 50230000 21496000 24047000 0 25604000 34982000 24860000 0 0 0 105210000 0 79165000 0 0 0 0 1 0 1 1 0 1 1 1 2 0 2 10 METPSSAKRVTR 154 296 True 306 3554;3555;3556;3557;3558;3559;3560;3561;3562;3563;3564;3565;3566;3567;3568;3569;3570;3571;3572;3573;3574;3575;3576 1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789 1786 -1 Q84WM9 Q84WM9 1 1 1 Elongation factor 1-beta 1 sp|Q84WM9|EF1B1_ARATH Elongation factor 1-beta 1 OS=Arabidopsis thaliana OX=3702 GN=At5g12110 PE=2 SV=2 1 1 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 6.1 6.1 6.1 24.788 228 228 0 17.188 By MS/MS By MS/MS 0 0 0 0 0 0 0 6.1 6.1 0 0 0 0 0 0 11167000 0 0 0 0 0 0 0 5380200 5787100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 AVTFSDLHTERGLK 155 94 True 97 1084;1085 605 605 -1 Q8GWL7 Q8GWL7 1 1 1 At2g41550 tr|Q8GWL7|Q8GWL7_ARATH Rho termination factor OS=Arabidopsis thaliana OX=3702 GN=At2g41550 PE=1 SV=1 1 1 1 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 2.5 2.5 2.5 52.698 475 475 0.0045662 6.043 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 2.5 2.5 2.5 0 0 2.5 2.5 2.5 2.5 2.5 2.5 2.5 117600000 0 0 0 9323300 8716100 7035900 0 0 8663500 9952700 14319000 36300000 12039000 2358200 8890600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 VFVVVQDDTFRK 156 436 True 450 5447;5448;5449;5450;5451;5452;5453;5454;5455;5456 2837 2837 -1 Q8GWP4 Q8GWP4 1 1 1 At2g21530 tr|Q8GWP4|Q8GWP4_ARATH At2g21530 OS=Arabidopsis thaliana OX=3702 GN=At2g21530 PE=1 SV=1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 1 0 0 0 6.7 6.7 6.7 22.675 209 209 0 24.998 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6.7 6.7 6.7 0 0 0 6.7 6.7 6.7 0 0 6.7 0 0 0 39559000 1742900 2116700 3921800 0 0 0 10379000 7182300 8457300 0 0 5758700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 2 LQDSEESIEKPTTE 157 285 True 293 3411;3412;3413;3414;3415;3416;3417 1688;1689 1689 -1 Q8GXH5 Q8GXH5 1 1 1 tr|Q8GXH5|Q8GXH5_ARATH 37S ribosomal protein S27 OS=Arabidopsis thaliana OX=3702 GN=At5g44710 PE=1 SV=1 1 1 1 1 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 20.6 20.6 20.6 11.529 102 102 0 74.398 By matching By matching By MS/MS By MS/MS By MS/MS By matching 20.6 0 0 20.6 0 0 20.6 20.6 20.6 20.6 0 0 0 0 0 36240000 1715300 0 0 1900000 0 0 11232000 7288900 12452000 1651000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 4 ASGSLKSLISSAVGRGVTEAR 158 69 True 72 777;778;779;780;781;782 406;407;408;409 406 -1 Q8H0U5 Q8H0U5 2 2 2 Protein TIC 62, chloroplastic TIC62 sp|Q8H0U5|TIC62_ARATH Protein TIC 62, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC62 PE=1 SV=1 1 2 2 2 1 1 1 1 2 1 1 1 1 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 2 2 2 2 2 2 4.7 4.7 4.7 68.341 641 641 0 93.354 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 4.7 2 2 2 2 4.7 4.7 4.7 4.7 4.7 4.7 192100000 1879900 1621500 3810000 6052900 10845000 8596400 5544000 5411900 4430900 31906000 25220000 54561000 15306000 7562800 9352700 0 0 0 0 5060200 0 0 0 0 9469000 6170700 6104000 4999000 5378400 3155000 0 0 0 0 0 0 0 1 0 1 1 2 1 1 2 9 PPTSPIPNSTTSVSPAK;PPTSPLPSPVTNH 159 317;318 True;True 328;329 4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046 2058;2059;2060;2061;2062;2063;2064;2065;2066 2058;2063 -1 Q8LCA1 Q8LCA1 1 1 1 Protein CURVATURE THYLAKOID 1B, chloroplastic CURT1B sp|Q8LCA1|CUT1B_ARATH Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 1 14.4 14.4 14.4 18.482 174 174 0 20.383 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 0 0 0 14.4 14.4 14.4 0 0 14.4 0 0 14.4 80609000 0 0 0 0 0 0 21451000 13203000 9048500 0 0 24292000 0 0 12614000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 3 0 0 0 6 ATTEVGEAPATTTEAETTELPEIVK 160 91 True 94 1067;1068;1069;1070;1071 594;595;596;597;598;599 595 -1 Q8RXC1 Q8RXC1 1 1 1 At1g78210 tr|Q8RXC1|Q8RXC1_ARATH Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN=At1g78210 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3.8 3.8 3.8 35.661 314 314 0.0087719 5.9246 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 159110000 6505100 5027000 9979900 8728800 6455600 6038700 5779500 9864300 7518400 15654000 16167000 31677000 17432000 6576600 5701700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RSGLRPVTIDLK 161 339 True 350 4203;4204;4205;4206;4207;4208;4209;4210;4211;4212;4213;4214;4215;4216;4217 2130 2130 -1 Q8RXU5;Q9SRK6 Q8RXU5 3;1 3;1 3;1 60S ribosomal protein L37a-2 RPL37AC sp|Q8RXU5|R37A2_ARATH 60S ribosomal protein L37a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37AC PE=3 SV=1 2 3 3 3 2 2 2 3 1 2 3 2 3 3 1 3 2 1 2 2 2 2 3 1 2 3 2 3 3 1 3 2 1 2 2 2 2 3 1 2 3 2 3 3 1 3 2 1 2 28.3 28.3 28.3 10.241 92 92;92 0 101.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10.9 10.9 10.9 28.3 10.9 10.9 28.3 28.3 28.3 28.3 10.9 28.3 10.9 10.9 10.9 864810000 21364000 13087000 49142000 48040000 17271000 29159000 180930000 114300000 124040000 28325000 24755000 106660000 44151000 6252000 57334000 10810000 0 13480000 11820000 10429000 10649000 10512000 17239000 13880000 5561900 9444700 7117300 7251300 0 9368400 0 0 1 1 0 1 3 2 1 1 0 0 1 0 1 12 AGGAYTMNTASAVTVR;VGIVGK;VGIVGKYGTR 162 32;446;447 True;True;True 32;460;461 400;401;402;403;404;405;5555;5556;5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585;5586;5587;5588;5589;5590;5591;5592 197;198;199;200;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892 198;2882;2885 31 71 -1;-1 Q8RXX5;Q8W463 Q8RXX5;Q8W463 2;1 2;1 2;1 50S ribosomal protein L19-2, chloroplastic;50S ribosomal protein L19-1, chloroplastic sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1;sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1 2 2 2 2 0 1 1 1 1 0 2 1 1 0 0 0 1 2 1 0 1 1 1 1 0 2 1 1 0 0 0 1 2 1 0 1 1 1 1 0 2 1 1 0 0 0 1 2 1 8.3 8.3 8.3 25.468 229 229;225 0 16.326 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 0 4.8 4.8 4.8 4.8 0 8.3 3.5 4.8 0 0 0 4.8 8.3 4.8 80474000 0 1920300 3030200 2990900 2507400 0 45246000 3163000 7395800 0 0 0 5664500 2649400 5906500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 LGDIMGLLNKK;TGDIVEIK 163 270;386 True;True 278;399 3222;3223;3224;3225;3226;3227;3228;3229;3230;4745;4746;4747 1614;2405 1614;2405 32 119 -1;-1 Q8VY01 Q8VY01 1 1 1 Serine carboxypeptidase-like 46 SCPL46 sp|Q8VY01|SCP46_ARATH Serine carboxypeptidase-like 46 OS=Arabidopsis thaliana OX=3702 GN=SCPL46 PE=2 SV=1 1 1 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 1 2.6 2.6 2.6 51.883 465 465 0 11.118 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 2.6 0 0 2.6 0 2.6 0 0 2.6 2.6 2.6 2.6 33429000 0 0 0 2717500 0 0 2516100 0 2205400 0 0 20956000 0 2186200 2847700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2 AFLGGRPLPEEF 164 27 True 27 325;326;327;328;329;330;331 169;170;171 169 -1 Q9LSA3;Q9C8F7;Q8VZ19 Q9LSA3;Q9C8F7;Q8VZ19 1;1;1 1;1;1 1;1;1 60S ribosomal protein L30-3;Putative 60S ribosomal protein L30-1;60S ribosomal protein L30-2 RPL30C;RPL30A;RPL30B sp|Q9LSA3|RL303_ARATH 60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1;sp|Q9C8F7|RL301_ARATH Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1;sp|Q8VZ19|RL302_ARATH 60S ribosomal protein 3 1 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 11.6 11.6 11.6 12.279 112 112;112;112 0 17.492 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11.6 11.6 11.6 11.6 0 0 11.6 11.6 11.6 0 0 0 0 0 11.6 94008000 5484800 5838100 11011000 3583500 0 0 28628000 20336000 17268000 0 0 0 0 0 1859500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 SGKYTLGYKSVLK 165 353 True 364 4331;4332;4333;4334;4335;4336;4337;4338 2203;2204 2203 -1;-1;-1 Q93VG5 Q93VG5 1 1 1 40S ribosomal protein S8-1 RPS8A sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 10.8 10.8 10.8 24.993 222 222 0 12.011 By MS/MS 0 0 0 0 0 0 10.8 0 0 0 0 0 0 0 0 12289000 0 0 0 0 0 0 12289000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 DGEEGEEAAVAAPEEVKKSNHLLR 166 105 True 108 1204 670 670 -1 Q93VP3 Q93VP3 1 1 1 Eukaryotic translation initiation factor 5A-2 ELF5A-2 sp|Q93VP3|IF5A2_ARATH Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-2 PE=1 SV=1 1 1 1 1 1 1 0 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 0 0 1 0 0 0 17 17 17 17.14 159 159 0 127.52 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 17 17 0 17 0 17 0 17 0 0 0 17 0 0 0 54170000 4952500 4157600 0 4714400 0 1476300 0 8859100 0 0 0 30010000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2 SDDEHHFEASESGASKTYPQSAGNIRK 167 347 True 358 4296;4297;4298;4299;4300;4301 2181;2182 2181 -1 Q93W28 Q93W28 1 1 1 Uncharacterized protein At4g15545 sp|Q93W28|Y4554_ARATH Uncharacterized protein At4g15545 OS=Arabidopsis thaliana OX=3702 GN=At4g15545 PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4.2 4.2 4.2 37.206 337 337 0 23.695 By MS/MS 0 0 0 0 0 0 0 0 0 0 0 4.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 SSISISEPGSQTAR 168 372 True 384 4572 2340 2340 -1 Q945Q1 Q945Q1 1 1 1 Cysteine proteinase inhibitor 1 CYS1 sp|Q945Q1|CYT1_ARATH Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=CYS1 PE=1 SV=2 1 1 1 1 1 1 0 1 0 1 1 1 1 0 0 0 0 1 1 1 1 0 1 0 1 1 1 1 0 0 0 0 1 1 1 1 0 1 0 1 1 1 1 0 0 0 0 1 1 12.9 12.9 12.9 11.255 101 101 0 29.895 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 12.9 12.9 0 12.9 0 12.9 12.9 12.9 12.9 0 0 0 0 12.9 12.9 42402000 4588900 4495200 0 3502600 0 2114900 9052500 7695500 6961900 0 0 0 0 1485600 2505300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 5 ADQQAGTIVGGVR 169 13 True 13 159;160;161;162;163;164;165;166;167 95;96;97;98;99 96 -1 Q949U1 Q949U1 1 1 1 Dihomomethionine N-hydroxylase CYP79F1 sp|Q949U1|C79F1_ARATH Dihomomethionine N-hydroxylase OS=Arabidopsis thaliana OX=3702 GN=CYP79F1 PE=1 SV=1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 2 2 61.695 538 538 0 10.237 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 36022000 832900 990320 1101900 470550 1839300 0 4471900 3018500 4839200 1472200 0 7616500 4415700 1895900 3056900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 4 LAPNLYPKFRP 170 256 True 264 3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060 1521;1522;1523;1524 1523 -1 Q94K97 Q94K97 1 1 1 At5g24490 tr|Q94K97|Q94K97_ARATH 30S ribosomal protein OS=Arabidopsis thaliana OX=3702 GN=At5g24490 PE=1 SV=1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 6.8 6.8 6.8 34.856 308 308 0 23.969 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 6.8 6.8 6.8 0 0 0 6.8 6.8 6.8 6.8 0 0 0 0 6.8 56643000 2529600 4301300 9295200 0 0 0 15349000 8317000 8611000 4683000 0 0 0 0 3556700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 3 LIIQGKNLELSEPIKQHVEEK 171 280 True 288 3365;3366;3367;3368;3369;3370;3371;3372 1677;1678;1679 1678 -1 Q96500 Q96500 1 1 1 CCL sp|Q96500|LIRP1_ARATH Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 12.1 12.1 12.1 15.314 141 141 0 33.453 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 12.1 12.1 12.1 12.1 12.1 12.1 12.1 12.1 12.1 12.1 12.1 12.1 12.1 0 12.1 277330000 3002100 2345500 3043400 3345100 17627000 10828000 31401000 31214000 9256400 19550000 27555000 82469000 28127000 0 7564200 0 0 0 0 6206000 5734200 3322000 3713800 0 5397200 5228100 7972400 5548900 0 0 0 0 0 0 2 1 0 2 1 1 0 2 0 0 1 10 LDTKPVSRPVASEPVDR 172 266 True 274 3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197;3198;3199;3200;3201;3202;3203 1597;1598;1599;1600;1601;1602;1603;1604;1605;1606 1599 -1 Q9C891 Q9C891 1 1 1 Dirigent protein 20 DIR20 sp|Q9C891|DIR20_ARATH Dirigent protein 20 OS=Arabidopsis thaliana OX=3702 GN=DIR20 PE=2 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 0 0 8 8 8 20.618 187 187 0 10.569 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 8 8 8 8 8 8 8 8 8 0 8 0 0 0 100580000 3069400 4041000 7096500 7809000 5096200 3076800 18553000 16708000 8809000 5319800 0 20998000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 4 EMPIVGGSGLFRFAR 173 151 True 156 1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915 1044;1045;1046;1047 1045 33 146 -1 Q9C9H9 Q9C9H9 1 1 1 Pentatricopeptide repeat-containing protein At1g71420 PCMP-H70 sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H70 PE=2 SV=1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 1.2 1.2 1.2 84.021 745 745 1 -2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1.2 1.2 1.2 0 0 0 1.2 1.2 1.2 0 0 0 1.2 0 0 71207000 4796600 6135700 12008000 0 0 0 17634000 14713000 14007000 0 0 0 1912500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 EILMRDSNR + 174 146 True 151 1825;1826;1827;1828;1829;1830;1831 1005 1005 34 725 -1 Q9C9W5 Q9C9W5 1 1 1 Glycerate dehydrogenase HPR, peroxisomal HPR sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=HPR PE=1 SV=1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2.3 2.3 2.3 42.247 386 386 0 7.5678 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 0 0 0 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 130170000 0 0 0 9585700 6921200 4439500 12071000 10745000 10145000 9240200 12232000 25887000 12546000 7881400 8474300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 ALGLPVSKL 175 45 True 47 536;537;538;539;540;541;542;543;544;545;546;547 273;274 273 -1 Q9CAX6 Q9CAX6 5 5 1 40S ribosomal protein S14-2 RPS14B sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1 1 5 5 1 3 3 4 4 4 3 5 5 5 2 2 2 2 2 1 3 3 4 4 4 3 5 5 5 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.3 31.3 7.3 16.273 150 150 0 192.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 30.7 30.7 31.3 31.3 31.3 30.7 31.3 31.3 31.3 20 14.7 18 14.7 20 7.3 1177800000 14349000 31378000 40539000 51211000 28308000 31512000 276100000 330860000 291170000 9373400 18601000 26711000 11342000 4533900 11810000 10564000 15288000 10912000 13575000 12427000 18399000 15736000 19978000 21159000 3470200 10619000 5538400 8390700 2901800 0 2 4 2 4 2 2 4 4 7 1 1 1 1 1 1 37 ATGGNKTKTPGPGAQSALR;IGRIEDVTPIPTDSTR;IGRIEDVTPIPTDSTRR;TPGPGAQSALR;VETVTLGPSVR 176 81;218;219;405;432 True;True;True;True;True 84;226;227;418;446 898;899;900;901;902;903;904;905;906;907;908;909;910;911;912;913;914;915;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;5068;5069;5070;5071;5072;5073;5382;5383;5384;5385;5386;5387;5388;5389;5390;5391;5392;5393;5394;5395;5396 471;472;473;474;475;476;477;478;479;480;481;1334;1335;1336;1337;1338;1339;1340;1341;1342;2638;2639;2783;2784;2785;2786;2787;2788;2789;2790;2791;2792;2793;2794;2795;2796;2797 477;1335;1342;2638;2797 -1 Q9M9W1;Q9FE58 Q9M9W1;Q9FE58 1;1 1;1 1;1 60S ribosomal protein L22-2;60S ribosomal protein L22-3 RPL22B;RPL22C sp|Q9M9W1|RL222_ARATH 60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1;sp|Q9FE58|RL223_ARATH 60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1 2 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 11.3 11.3 11.3 14.018 124 124;124 0 44.497 By MS/MS By MS/MS By MS/MS 0 0 0 0 0 0 11.3 11.3 11.3 0 0 0 0 0 0 75551000 0 0 0 0 0 0 32976000 20370000 22204000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 3 VIAANKDRNLYELR 177 451 True 465 5616;5617;5618 2897;2898;2899 2897 -1;-1 Q9FE65 Q9FE65 6 6 1 60S ribosomal protein L34-2 RPL34B sp|Q9FE65|RL342_ARATH 60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1 1 6 6 1 1 3 2 5 2 1 5 4 4 2 1 2 1 1 2 1 3 2 5 2 1 5 4 4 2 1 2 1 1 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 34.5 34.5 11.8 13.65 119 119 0 208.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 15.1 21 22.7 22.7 15.1 13.4 34.5 32.8 34.5 19.3 5.9 19.3 13.4 7.6 19.3 415010000 2047300 11245000 6201900 30938000 6333700 2655400 137860000 86733000 43531000 9671900 11490000 29880000 3892300 4190300 28335000 0 4686400 4015000 4730100 3318000 0 9388100 7326900 5038100 3508100 0 3723200 0 0 5428300 0 0 1 1 0 0 5 3 1 0 0 0 0 0 0 11 AYGGVLSGSAVR;IQGIPHLRPTEYKR;TVNRAYGGVLSGSAVR;TVNRAYGGVLSGSAVRER;VQRLVYR;VQRLVYRSR 178 96;230;414;415;462;463 True;True;True;True;True;True 99;238;427;428;476;477 1094;2799;2800;2801;2802;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166;5167;5168;5169;5170;5171;5172;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720 608;1411;1412;2674;2675;2676;2677;2678;2679;2935;2936 608;1411;2674;2678;2935;2936 -1 Q9FF90;Q9SMT4 Q9FF90 3;1 2;1 2;1 60S ribosomal protein L13-3 RPL13D sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1 2 3 2 2 0 3 3 0 0 0 2 1 1 0 0 0 0 0 2 0 2 2 0 0 0 1 0 0 0 0 0 0 0 1 0 2 2 0 0 0 1 0 0 0 0 0 0 0 1 20.4 10.7 10.7 23.485 206 206;206 0 15.051 By matching By MS/MS By matching By matching By matching By matching 0 20.4 20.4 0 0 0 15 9.7 9.7 0 0 0 0 0 15 12106000 0 2366600 6508600 0 0 0 2565900 0 0 0 0 0 0 0 664990 0 1365500 2557900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 AGKGFTLEELK;IFPRPTSGPLRPVVHGQTLK;TYKAKLVVFPR 179 34;207;419 True;False;True 34;214;432 408;409;2569;2570;2571;2572;2573;2574;5224;5225;5226;5227 202;1295;2700 202;1295;2700 -1;-1 Q9FHG2 Q9FHG2 3 3 3 60S ribosomal protein L32-2 RPL32B sp|Q9FHG2|RL322_ARATH 60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1 1 3 3 3 2 2 2 2 0 0 3 3 3 0 1 0 0 0 0 2 2 2 2 0 0 3 3 3 0 1 0 0 0 0 2 2 2 2 0 0 3 3 3 0 1 0 0 0 0 12 12 12 15.475 133 133 0 24.156 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 10.5 10.5 12 10.5 0 0 12 12 12 0 8.3 0 0 0 0 134430000 2422700 3009400 7545600 6590700 0 0 50526000 32908000 29523000 0 1900900 0 0 0 0 1888200 2051400 2479400 2189100 0 0 3643400 2231600 2259400 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 4 ASQLDVVVSNK;ASQLDVVVSNKLGR;ASQLDVVVSNKLGRLR 180 71;72;73 True;True;True 74;75;76 797;798;799;800;801;802;803;804;805;806;807;808;809;810;811;812;813;814 428;429;430;431 428;429;431 -1 Q9FIJ2 Q9FIJ2 1 1 1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 sp|Q9FIJ2|NDUA2_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At5g47890 PE=1 SV=1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 11.3 11.3 11.3 10.851 97 97 0 10.051 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 0 0 0 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 39013000 0 0 0 2145800 0 1287600 5016200 4236200 4389500 3677100 3314200 9503100 2489100 1021600 1933000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 11 SLNPKLPILIR 181 362 True 373 4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437 2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288 2281 -1 Q9SG91;Q9FLB7 Q9SG91;Q9FLB7 1;1 1;1 1;1 T7M13.6;At5g05370 sp|Q9SG91|UCRQ1_ARATH Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-1 PE=1 SV=1;sp|Q9FLB7|UCRQ2_ARATH Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-2 PE=1 SV=1 2 1 1 1 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 16.7 16.7 16.7 8.5049 72 72;72 0.0088889 5.9641 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 16.7 0 0 0 16.7 16.7 16.7 16.7 16.7 16.7 0 0 16.7 59619000 0 0 1684200 0 0 0 19712000 15315000 10515000 2298800 3015100 4975900 0 0 2102600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 AVVYALSPFQQK 182 95 True 98 1086;1087;1088;1089;1090;1091;1092;1093 606;607 606 -1;-1 Q9FLN4 Q9FLN4 4 4 4 50S ribosomal protein L27, chloroplastic RPL27 sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL27 PE=2 SV=1 1 4 4 4 4 4 4 3 4 2 2 3 3 3 3 3 3 2 3 4 4 4 3 4 2 2 3 3 3 3 3 3 2 3 4 4 4 3 4 2 2 3 3 3 3 3 3 2 3 19.7 19.7 19.7 21.737 198 198 0 43.732 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 19.7 19.7 19.7 16.7 19.7 16.2 16.2 16.7 16.7 16.7 16.7 16.7 16.7 16.2 16.7 1501500000 42451000 50681000 58903000 134850000 66895000 26447000 196240000 145440000 123460000 97334000 102220000 264920000 79571000 24434000 87645000 25129000 23310000 22654000 32845000 21941000 19174000 22858000 13449000 16279000 26369000 17252000 25284000 13743000 18821000 18756000 0 1 2 1 1 1 3 3 3 2 2 5 2 0 1 27 EIVPENPNSYRAR;EIVPENPNSYRARK;ISVYPREIVPENPNSYRAR;LGVKIYGDQVAKPGAIIVR 183 147;148;236;277 True;True;True;True 152;153;244;285 1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;2853;2854;2855;2856;3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311;3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323;3324;3325;3326;3327;3328;3329;3330 1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021;1022;1421;1639;1640;1641;1642;1643;1644;1645;1646;1647;1648;1649;1650;1651 1009;1022;1421;1649 -1 Q9FLX7 Q9FLX7 1 1 1 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial sp|Q9FLX7|NDUA5_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g52840 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.9 8.9 8.9 19.179 169 169 0 18.456 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 1051800000 30801000 30238000 49464000 38855000 41520000 26715000 130670000 138300000 106020000 61860000 80190000 189980000 54140000 25898000 47188000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 1 1 1 1 1 11 TEIPAATPSDPQLKE 184 383 True 396 4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709;4710;4711;4712;4713 2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384 2377 -1 Q9FNP8 Q9FNP8 2 1 1 40S ribosomal protein S19-3 RPS19C sp|Q9FNP8|RS193_ARATH 40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1 1 2 1 1 1 1 1 0 0 1 2 2 2 0 0 1 0 1 0 1 1 1 0 0 1 1 1 1 0 0 1 0 1 0 1 1 1 0 0 1 1 1 1 0 0 1 0 1 0 18.2 11.2 11.2 15.697 143 143 0 43.003 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 11.2 11.2 11.2 0 0 11.2 18.2 18.2 18.2 0 0 11.2 0 11.2 0 65822000 3671400 3027800 5658700 0 0 1350600 17491000 16129000 12414000 0 0 5123600 0 956550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 3 ATGKTVKDVSPHEFVK;GGLGVGAFRR 185 82;179 True;False 85;185 916;917;918;919;920;921;922;923;924;2236;2237;2238 482;483;484;1175 483;1175 -1 Q9FZ76 Q9FZ76 1 1 1 60S ribosomal protein L6-1 RPL6A sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 4.3 4.3 4.3 26.152 233 233 0 6.3563 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 0 0 0 0 0 4.3 0 0 0 4.3 4.3 4.3 4.3 4.3 4.3 76648000 0 0 0 0 0 3471200 0 0 0 10180000 9872600 16309000 18316000 4952900 13547000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 IDISGVNTEK 186 204 True 211 2538;2539;2540;2541;2542;2543;2544 1276;1277 1277 -1 Q9LER7 Q9LER7 3 3 3 50S ribosomal protein 5, chloroplastic PSRP5 sp|Q9LER7|PSRP5_ARATH 50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1 1 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 3 15.5 15.5 15.5 16.361 148 148 0 66.264 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15.5 15.5 15.5 15.5 15.5 15.5 15.5 15.5 15.5 15.5 15.5 15.5 13.5 13.5 15.5 775570000 16159000 18837000 16740000 71824000 38740000 16977000 80993000 65302000 37585000 60793000 88775000 182300000 32737000 19610000 28191000 6628900 7025100 5747300 11838000 8459100 7123700 6747600 5911300 4820100 9508500 14239000 13145000 6362700 9338200 6034600 0 0 0 1 1 0 4 3 0 1 2 6 1 0 0 19 EEPKTVVAAVPVDKLPLESK;TVVAAVPVDKLPLESK;TVVAAVPVDKLPLESKEAK 187 133;417;418 True;True;True 138;430;431 1617;1618;1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643;5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198;5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223 926;927;928;929;930;931;932;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699 930;2681;2696 -1 Q9LHG9 Q9LHG9 1 1 1 Nascent polypeptide-associated complex subunit alpha-like protein 1 sp|Q9LHG9|NACA1_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12390 PE=1 SV=1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 5.4 5.4 5.4 21.982 203 203 0 45.185 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 0 5.4 5.4 0 0 0 117240000 0 0 0 9720700 8975500 4540800 29335000 23002000 0 0 10922000 30747000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 10 TTEEKEILAAK 188 412 True 425 5139;5140;5141;5142;5143;5144;5145;5146;5147;5148 2663;2664;2665;2666;2667;2668;2669;2670;2671;2672 2672 -1 Q9LJG3 Q9LJG3 1 1 1 GDSL esterase/lipase ESM1 ESM1 sp|Q9LJG3|ESM1_ARATH GDSL esterase/lipase ESM1 OS=Arabidopsis thaliana OX=3702 GN=ESM1 PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 1 1 1 1 1 1 1 3.3 3.3 3.3 44.06 392 392 0.0045045 6.0161 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 0 0 0 0 0 0 3.3 0 3.3 3.3 3.3 3.3 3.3 3.3 3.3 46823000 0 0 0 0 0 0 7013400 0 4992100 2892300 9678100 12748000 5052400 1768100 2679000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 DLPQTYWPYGKSR 189 115 True 119 1391;1392;1393;1394;1395;1396;1397;1398 777;778;779 777 -1 Q9LPC3 Q9LPC3 1 1 1 F22M8.11 sp|Q9LPC3|BBE1_ARATH Berberine bridge enzyme-like 1 OS=Arabidopsis thaliana OX=3702 GN=SEC1A PE=2 SV=1 1 1 1 1 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 2 2 2 60.102 541 541 0 8.3194 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 0 0 0 2 0 2 0 0 0 2 2 2 0 0 2 20300000 0 0 0 1208700 0 2234000 0 0 0 2717500 3056100 9749100 0 0 1334700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 2 LGLVFNPYGGK 190 273 True 281 3265;3266;3267;3268;3269;3270 1623;1624 1624 -1 Q9LR64 Q9LR64 1 1 1 Photosystem II repair protein PSB27-H1, chloroplastic PSB27-1 sp|Q9LR64|PB27A_ARATH Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 5.2 5.2 5.2 18.834 174 174 0.0086957 5.9061 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 0 0 0 5.2 5.2 5.2 0 0 0 5.2 5.2 5.2 61304000 0 0 0 0 0 0 12911000 9485900 11352000 0 0 0 10155000 6517700 10883000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 ALLGKASFR 191 46 True 48 548;549;550;551;552;553 275;276 275 -1 Q9LUD4 Q9LUD4 2 1 1 60S ribosomal protein L18a-3 RPL18AC sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1 1 2 1 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 13.5 7.3 7.3 21.309 178 178 0 36.15 By matching By MS/MS By MS/MS By MS/MS 0 0 7.3 0 0 0 13.5 7.3 7.3 0 0 0 0 0 0 40635000 0 0 1938900 0 0 0 10971000 19833000 7892000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 3 GGFRFHQYQVVGR;TGYHNMYKEYR 192 178;393 True;False 184;406 2231;2232;2233;2234;2235;4815 1171;1172;1173;1174;2419 1172;2419 22 92 -1 Q9LVT8 Q9LVT8 1 1 1 At5g47210 sp|Q9LVT8|RGGC_ARATH RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 4.8 4.8 4.8 37.999 357 357 0 17.643 By MS/MS By MS/MS By MS/MS 0 0 0 4.8 4.8 0 0 0 0 0 0 4.8 0 0 0 33137000 0 0 0 8012800 1906900 0 0 0 0 0 0 23218000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 EAAAPAIGDTAQFPSLG 193 125 True 130 1532;1533;1534 875 875 -1 Q9LXJ2 Q9LXJ2 1 1 1 F3C22_130 sp|Q9LXJ2|QCR9_ARATH Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1 1 1 1 1 0 0 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 0 1 19.4 19.4 19.4 8.4485 72 72 0 50.329 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 0 0 0 19.4 19.4 19.4 19.4 19.4 19.4 0 19.4 19.4 19.4 0 19.4 122160000 0 0 0 7318600 5376000 1446800 35980000 19087000 16268000 0 8553600 19164000 4259500 0 4703500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 0 6 YEDISVLGQRPVEE 194 479 True 493 5848;5849;5850;5851;5852;5853;5854;5855;5856;5857 2998;2999;3000;3001;3002;3003 2999 -1 Q9LZ57 Q9LZ57 2 2 2 60S ribosomal protein L36-3 RPL36C sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 16.7 16.7 16.7 12.189 108 108 0 94.091 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 16.7 711100000 22880000 30344000 48552000 32263000 8538300 7426300 132700000 91553000 123630000 28486000 36661000 47217000 42615000 25153000 33090000 14496000 16595000 19095000 8332100 5406500 6975700 12495000 10484000 10266000 5971100 5136100 3361900 6215700 7368800 5340600 2 3 3 3 0 0 3 3 5 2 3 2 2 1 1 33 VATGLFVGLNK;VATGLFVGLNKGHVVTKR 195 426;427 True;True 440;441 5284;5285;5286;5287;5288;5289;5290;5291;5292;5293;5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307;5308;5309;5310;5311;5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335;5336;5337;5338 2728;2729;2730;2731;2732;2733;2734;2735;2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765 2732;2764 -1 Q9M1X3 Q9M1X3 1 1 1 F16M2_10 tr|Q9M1X3|Q9M1X3_ARATH AT3g63160/F16M2_10 OS=Arabidopsis thaliana OX=3702 GN=F16M2_10 PE=1 SV=1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 17.4 17.4 17.4 7.2563 69 69 0 28.665 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 17.4 17.4 17.4 17.4 17.4 0 17.4 17.4 17.4 17.4 17.4 17.4 0 0 17.4 282010000 14043000 27166000 34370000 19326000 2482400 0 53386000 49549000 43967000 4225000 6208000 22813000 0 0 4472500 0 14482000 14506000 9727900 0 0 11011000 0 9670300 0 0 0 0 0 4717900 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 4 VEKSGGEVNFPK 196 430 True 444 5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373;5374;5375;5376;5377 2775;2776;2777;2778 2777 -1 Q9M2D8 Q9M2D8 1 1 1 Uncharacterized protein At3g61260 sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1 1 1 1 1 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 11.3 11.3 11.3 23.144 212 212 0 13.506 By matching By MS/MS By MS/MS By MS/MS By matching By matching 0 0 11.3 11.3 11.3 0 11.3 11.3 11.3 0 0 0 0 0 0 24234000 0 0 2302600 1598700 2958100 0 7550700 7519000 2304400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 ALTVVEKPVEEPAPAKPASASLDR 197 52 True 54 597;598;599;600;601;602 294 294 -1 Q9M352 Q9M352 3 1 1 60S ribosomal protein L36-2 RPL36B sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1 1 3 1 1 3 2 2 3 2 0 3 2 3 0 0 0 1 0 1 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 19.6 18.8 18.8 12.676 112 112 0 18.652 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 19.6 14.3 14.3 19.6 18.8 0 19.6 14.3 19.6 0 0 0 13.4 0 13.4 29366000 2249300 0 0 3683600 1645200 0 15370000 0 6417600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 TGLFVGLNKGHVVTR;TGLFVGLNKGHVVTRR;TTPQVKTGLFVGLNKGHVVTR 198 391;392;413 False;False;True 404;405;426 4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813;4814;5149;5150;5151;5152;5153 2413;2414;2415;2416;2417;2418;2673 2414;2417;2673 -1 Q9M3D6 Q9M3D6 1 1 1 ABC transporter G family member 19 ABCG19 sp|Q9M3D6|AB19G_ARATH ABC transporter G family member 19 OS=Arabidopsis thaliana OX=3702 GN=ABCG19 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1.7 1.7 1.7 80.656 725 725 0 7.4151 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1081900000 6871600 6128500 6669200 36602000 23152000 13061000 106970000 143320000 122040000 61957000 106580000 156270000 127120000 46201000 118970000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 2 ISLIQSAPQTNK 199 234 True 242 2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843;2844;2845;2846;2847;2848;2849;2850 1418;1419 1418 -1 Q9MAM1 Q9MAM1 1 1 1 CBL-interacting serine/threonine-protein kinase 9 CIPK9 sp|Q9MAM1|CIPK9_ARATH CBL-interacting serine/threonine-protein kinase 9 OS=Arabidopsis thaliana OX=3702 GN=CIPK9 PE=1 SV=2 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 2.9 2.9 2.9 50.504 447 447 0 7.8873 By matching By MS/MS By MS/MS By MS/MS 0 0 0 0 0 0 2.9 2.9 2.9 0 0 0 0 2.9 0 43636000 0 0 0 0 0 0 8046400 21587000 14002000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 3 MEETAKPLGFNVR 200 295 True 305 3550;3551;3552;3553 1776;1777;1778 1777 -1 Q9S714 Q9S714 6 1 1 Photosystem I reaction center subunit IV B, chloroplastic PSAE2 sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE2 PE=2 SV=1 1 6 1 1 4 5 5 6 5 4 6 6 6 4 5 6 5 4 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.2 20.7 20.7 15.189 145 145 0 98.591 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16.6 37.2 37.2 37.2 37.2 37.2 37.2 37.2 37.2 35.2 37.2 37.2 37.2 37.2 37.2 3627300000 0 5159300 105630000 187870000 169610000 89860000 442320000 356680000 386240000 197430000 312800000 770580000 245320000 97753000 260070000 0 0 68414000 76241000 94889000 78181000 56605000 67731000 79478000 96546000 97053000 116980000 85320000 92511000 105080000 0 0 2 2 3 1 3 3 2 2 2 3 3 1 2 29 AAEDTPPATASSDSSSTTAAAAPAKVPAAK;NVGSVVAVDQDPK;NVGSVVAVDQDPKTR;NVGSVVAVDQDPKTRYPVVVR;TRYPVVVR;TRYPVVVRFAK 201 3;309;310;311;409;410 True;False;False;False;False;False 3;320;321;322;422;423 42;43;44;45;46;47;48;49;50;51;52;53;54;55;56;57;58;59;60;61;62;63;64;65;66;67;68;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754;3755;3756;3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844;3845;3846;3847;3848;3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860;3861;3862;3863;3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135 36;37;38;39;40;41;42;43;44;45;46;47;48;49;50;51;52;53;54;55;56;57;58;59;60;61;62;63;64;1820;1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012;2013;2014;2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041;2042;2043;2653;2654;2655;2656;2657;2658;2659;2660;2661 57;1825;1827;1976;2656;2661 -1 Q9S7H1 Q9S7H1 22 22 2 Photosystem I reaction center subunit II-1, chloroplastic psaD1 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=psaD1 PE=1 SV=1 1 22 22 2 19 20 20 18 18 16 19 19 18 18 20 17 18 15 20 19 20 20 18 18 16 19 19 18 18 20 17 18 15 20 1 2 1 1 1 1 1 2 1 2 2 2 2 1 2 66.3 66.3 22.1 22.598 208 208 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 66.3 66.3 66.3 61.1 61.1 51.4 66.3 61.1 61.1 53.8 61.1 53.8 53.8 61.1 61.1 30158000000 881240000 870850000 1098600000 1715000000 1801100000 827050000 3573400000 4060300000 3374200000 1241900000 2109400000 4772700000 1933200000 350290000 1548400000 195460000 164010000 140140000 191750000 182360000 137420000 156310000 149550000 159260000 137380000 151390000 209720000 135380000 117340000 150410000 10 12 10 13 11 6 22 20 21 10 13 22 15 7 14 206 AEKTDSSAAAAAAPATK;AEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLR;ANPGREGVGLNMR;DGVYPEK;DGVYPEKANPGR;DGVYPEKANPGREGVGLNMR;EAPVGFTPPQLDPNTPSPIFAGSTGGLLR;EAPVGFTPPQLDPNTPSPIFAGSTGGLLRK;EGPNLLK;EGPNLLKLAR;EGPNLLKLARK;EGVGLNMR;EGVGLNMRSIGKNVSPIEVK;EQIFEMPTGGAAIMR;FTGKQSYDL;NVSPIEVK;NVSPIEVKFTGK;SIGKNVSPIEVK;SIGKNVSPIEVKFTGK;SKYKITYQFYR;VFPNGEVQYLHPK;VFPNGEVQYLHPKDGVYPEK 202 19;20;53;106;107;108;130;131;140;141;142;144;145;153;169;312;313;355;356;358;434;435 True;True;True;True;True;True;True;True;True;True;True;True;True;True;True;True;True;True;True;True;True;True 19;20;55;56;109;110;111;112;135;136;145;146;147;149;150;158;175;323;324;366;367;369;448;449 212;213;214;215;216;217;218;219;220;221;222;223;224;225;226;227;228;229;230;231;232;233;234;235;236;237;238;239;240;241;242;243;244;245;603;604;605;606;607;608;609;610;611;612;613;614;615;616;617;618;619;620;621;622;623;624;625;1205;1206;1207;1208;1209;1210;1211;1212;1213;1214;1215;1216;1217;1218;1219;1220;1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242;1243;1244;1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609;1610;1611;1612;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396;4397;4398;4412;4413;4414;4415;5411;5412;5413;5414;5415;5416;5417;5418;5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446 123;124;125;126;127;128;129;130;131;132;133;134;135;136;137;138;139;140;295;296;297;298;299;671;672;673;674;675;676;677;678;679;680;681;682;683;684;685;686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716;717;718;719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;910;911;912;913;914;915;916;917;918;919;920;921;922;977;978;979;980;981;982;983;984;985;986;987;988;989;990;991;992;993;994;995;997;998;999;1000;1001;1002;1003;1004;1059;1114;1115;2044;2045;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2274;2806;2807;2808;2809;2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835;2836 126;134;297;672;689;746;911;914;977;986;995;1000;1001;1059;1114;2044;2045;2233;2247;2274;2806;2836 35;36;37 112;120;186 -1 Q9S7L9 Q9S7L9 1 1 1 Cytochrome c oxidase subunit 6b-1 COX6B-1 sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.9 9.9 9.9 21.195 191 191 0 63.699 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.9 108120000 2188200 2599600 2379600 4301800 4287300 3808900 11966000 10174000 10283000 3973900 9004100 30438000 5787100 2529700 4402600 0 0 0 0 0 0 0 0 1580300 0 0 3501800 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 ADAVNAQTPSLSEQYHLEK 203 10 True 10 125;126;127;128;129;130;131;132;133;134;135;136;137;138;139;140;141;142;143 84;85 84 -1 Q9S7Y7 Q9S7Y7 3 3 3 Alpha-xylosidase 1 XYL1 sp|Q9S7Y7|XYL1_ARATH Alpha-xylosidase 1 OS=Arabidopsis thaliana OX=3702 GN=XYL1 PE=1 SV=1 1 3 3 3 3 3 2 1 2 2 1 2 1 3 3 3 2 2 2 3 3 2 1 2 2 1 2 1 3 3 3 2 2 2 3 3 2 1 2 2 1 2 1 3 3 3 2 2 2 3.9 3.9 3.9 102.4 915 915 0 20.272 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3.9 3.9 2.7 1.3 2.7 2.6 1.3 2.7 1.3 3.9 3.9 3.9 2.5 2.5 2.7 252040000 3081800 4899100 5510400 7880700 21616000 5619300 8337800 28750000 5515500 21587000 39238000 62325000 9689900 3214300 24773000 3491200 2895700 3405200 3229000 5681400 5614200 0 4210500 0 5899800 4123200 5780800 3742400 3506600 5285800 0 0 1 0 0 0 0 1 0 0 1 4 0 0 1 8 EQPPQVGKVIGK;FALSKGWVIEK;TIATSATHYNGVR 204 154;158;397 True;True;True 159;163;410 1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968;1987;1988;1989;1990;1991;1992;1993;1994;4867;4868;4869;4870;4871;4872;4873;4874;4875;4876 1060;1061;1062;1063;1064;1065;1066;1074;2454 1062;1074;2454 -1 Q9S831 Q9S831 7 7 2 Photosystem I reaction center subunit IV A, chloroplastic PSAE1 sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1 1 7 7 2 6 6 6 7 6 5 7 6 6 5 6 7 6 4 6 6 6 6 7 6 5 7 6 6 5 6 7 6 4 6 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 43.4 43.4 26.6 14.967 143 143 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 43.4 43.4 43.4 43.4 43.4 43.4 43.4 34.3 34.3 41.3 43.4 43.4 43.4 34.3 43.4 27557000000 416550000 421750000 510930000 1192900000 973470000 347060000 5621300000 4427500000 3656900000 1089500000 1831800000 3447800000 1539700000 590350000 1489300000 209290000 186640000 187140000 266350000 262980000 171650000 363850000 332500000 331610000 232270000 261720000 265970000 225070000 259710000 284010000 10 12 13 19 21 10 45 43 36 13 15 18 13 9 23 300 AAEDPAPASSSSK;DSPAAAAAPDGATATKPKPPPIGPK;NVGSVVAVDQDPK;NVGSVVAVDQDPKTR;NVGSVVAVDQDPKTRYPVVVR;TRYPVVVR;TRYPVVVRFAK 205 2;122;309;310;311;409;410 True;True;True;True;True;True;True 2;127;320;321;322;422;423 24;25;26;27;28;29;30;31;32;33;34;35;36;37;38;39;40;41;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513;1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754;3755;3756;3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844;3845;3846;3847;3848;3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860;3861;3862;3863;3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135 12;13;14;15;16;17;18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33;34;35;800;801;802;803;804;805;806;807;808;809;810;811;812;813;814;815;816;817;818;819;820;821;822;823;824;825;826;827;828;829;830;831;832;833;834;835;836;837;838;839;840;841;842;843;844;845;846;847;848;849;850;851;852;853;854;855;856;857;858;859;860;861;862;863;864;865;1820;1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012;2013;2014;2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041;2042;2043;2653;2654;2655;2656;2657;2658;2659;2660;2661 27;825;1825;1827;1976;2656;2661 -1 Q9S841 Q9S841 4 1 1 Oxygen-evolving enhancer protein 1-2, chloroplastic PSBO2 sp|Q9S841|PSBO2_ARATH Oxygen-evolving enhancer protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBO2 PE=1 SV=1 1 4 1 1 3 4 3 4 4 4 3 4 4 3 3 3 3 2 3 1 1 0 1 1 1 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 0 1 1 0 0 0 0 0 0 13 3 3 35.019 331 331 0 6.7689 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 7.9 13 10 13 13 13 10 13 13 10 10 10 10 4.8 10 20349000 1814600 1159900 0 2494900 3069400 1958100 0 4831000 5021000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 ENVKNTAASVGEITLK;FLVPSYRGSSFLDPKGR;NAPPDFQNTK;NTAASVGEITLK 206 152;166;302;307 False;False;True;False 157;172;312;318 1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;2060;2061;2062;2063;2064;2065;2066;2067;2068;2069;2070;2071;2072;3620;3621;3622;3623;3624;3625;3626;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667 1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058;1097;1098;1099;1100;1101;1102;1103;1797;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817 1056;1098;1797;1805 -1 Q9SA56 Q9SA56 21 1 1 Photosystem I reaction center subunit II-2, chloroplastic PSAD2 sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1 1 21 1 1 18 18 19 17 17 15 18 18 18 17 19 15 17 14 19 0 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 0 0 1 1 1 1 0 1 0 1 66.2 21.1 21.1 22.306 204 204 0 10.426 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 59.3 59.3 59.3 53.9 53.9 44.1 59.3 60.8 60.8 53.4 60.8 46.6 53.4 53.9 60.8 37588000 0 0 0 0 0 0 0 11211000 10546000 3580800 6397800 0 3258900 0 2593900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 2 AEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLR;ANPGREGVGLNMR;DGVYPEK;DGVYPEKANPGR;DGVYPEKANPGREGVGLNMR;EAPVGFTPPQLDPNTPSPIFAGSTGGLLR;EAPVGFTPPQLDPNTPSPIFAGSTGGLLRK;EGPNLLK;EGPNLLKLAR;EGPNLLKLARK;EGVGLNMR;EGVGLNMRSIGKNVSPIEVK;EQIFEMPTGGAAIMR;FTGKQSYDL;NVSPIEVK;NVSPIEVKFTGK;SIGKNVSPIEVK;SIGKNVSPIEVKFTGK;SKYKITYQFYR;VFPNGEVQYLHPK;VFPNGEVQYLHPKDGVYPEK 207 21;53;106;107;108;130;131;140;141;142;144;145;153;169;312;313;355;356;358;434;435 True;False;False;False;False;False;False;False;False;False;False;False;False;False;False;False;False;False;False;False;False 21;55;56;109;110;111;112;135;136;145;146;147;149;150;158;175;323;324;366;367;369;448;449 246;247;248;249;250;251;603;604;605;606;607;608;609;610;611;612;613;614;615;616;617;618;619;620;621;622;623;624;625;1205;1206;1207;1208;1209;1210;1211;1212;1213;1214;1215;1216;1217;1218;1219;1220;1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242;1243;1244;1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609;1610;1611;1612;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396;4397;4398;4412;4413;4414;4415;5411;5412;5413;5414;5415;5416;5417;5418;5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446 141;142;295;296;297;298;299;671;672;673;674;675;676;677;678;679;680;681;682;683;684;685;686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716;717;718;719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;910;911;912;913;914;915;916;917;918;919;920;921;922;977;978;979;980;981;982;983;984;985;986;987;988;989;990;991;992;993;994;995;997;998;999;1000;1001;1002;1003;1004;1059;1114;1115;2044;2045;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2274;2806;2807;2808;2809;2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835;2836 142;297;672;689;746;911;914;977;986;995;1000;1001;1059;1114;2044;2045;2233;2247;2274;2806;2836 35;36;37 108;116;182 -1 Q9SAJ6 Q9SAJ6 1 1 1 Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic GAPCP1 sp|Q9SAJ6|G3PP1_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAPCP1 PE=1 SV=1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 4.3 4.3 4.3 44.83 422 422 0 6.1252 By MS/MS By MS/MS 0 0 0 4.3 0 0 0 0 0 0 0 0 0 0 4.3 16752000 0 0 0 9201300 0 0 0 0 0 0 0 0 0 0 7550300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 2 ATATEVPSAVRRSSSSGK 208 79 True 82 888;889 467;468 467 -1 Q9SD66 Q9SD66 1 1 1 F13I12.120 tr|Q9SD66|Q9SD66_ARATH Thylakoid soluble phosphoprotein OS=Arabidopsis thaliana OX=3702 GN=F13I12.120 PE=1 SV=1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 1 1 1 0 1 0 0 0 1 1 1 1 0 1 0 1 1 1 0 1 0 0 0 1 1 1 1 0 1 0 1 1 1 0 1 15 15 15 10.53 100 100 0 8.4368 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 0 0 0 15 15 15 15 0 15 0 15 15 15 0 15 84752000 0 0 0 13700000 4786900 1370700 14516000 0 12263000 0 10454000 20557000 2402200 0 4701000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 3 KSEGGFGGLGSLFKK 209 252 True 260 3012;3013;3014;3015;3016;3017;3018;3019;3020 1507;1508;1509 1509 -1 Q9SGA6;Q9LF30 Q9SGA6;Q9LF30 4;2 4;2 3;1 40S ribosomal protein S19-1;40S ribosomal protein S19-2 RPS19A;RPS19B sp|Q9SGA6|RS191_ARATH 40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1;sp|Q9LF30|RS192_ARATH 40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1 2 4 4 3 2 2 2 0 0 1 4 3 3 0 0 1 0 0 0 2 2 2 0 0 1 4 3 3 0 0 1 0 0 0 2 2 2 0 0 1 3 2 2 0 0 1 0 0 0 37.8 37.8 30.8 15.828 143 143;143 0 79.19 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 21 21 21 0 0 9.1 37.8 25.9 28 0 0 9.1 0 0 0 257250000 8809100 7276000 12166000 0 0 362720 89617000 60305000 73850000 0 0 4861900 0 0 0 10544000 8905200 9494500 0 0 0 6039200 5934200 7172000 0 0 0 0 0 0 1 1 2 0 0 0 3 1 3 0 0 0 0 0 0 11 DLDQVAGRIAVEP;DVSPHDFVKAYASHLKR;GGLGVGAFRR;SGKIELPTWTDIVK 210 114;123;179;352 True;True;True;True 118;128;185;363 1383;1384;1385;1386;1387;1388;1389;1390;1524;1525;1526;1527;1528;2236;2237;2238;4329;4330 773;774;775;776;866;867;868;869;870;1175;2202 775;869;1175;2202 -1;-1 Q9SGZ5 Q9SGZ5 1 1 1 Probable beta-D-xylosidase 7 BXL7 sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BXL7 PE=2 SV=2 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1.7 1.7 1.7 83.891 767 767 0 6.6186 By MS/MS By MS/MS 0 0 0 0 0 1.7 0 0 0 0 0 1.7 0 0 0 9187500 0 0 0 0 0 2145500 0 0 0 0 0 7042000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ISQLVNTAPGIPR 211 235 True 243 2851;2852 1420 1420 -1 Q9SI20 Q9SI20 1 1 1 Elongation factor 1-delta 2 sp|Q9SI20|EF1D2_ARATH Elongation factor 1-delta 2 OS=Arabidopsis thaliana OX=3702 GN=At2g18110 PE=1 SV=1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 5.6 5.6 5.6 25.266 231 231 0 7.0102 By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 5.6 5.6 5.6 0 0 0 0 0 5.6 0 0 0 17665000 0 0 0 4398000 3178500 2126900 0 0 0 0 0 7961200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 AAFPNLNSGSGLK 212 6 True 6 88;89;90;91 73 73 -1 Q9SIH0 Q9SIH0 5 1 1 40S ribosomal protein S14-1 RPS14A sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1 1 5 1 1 2 2 3 4 4 2 5 5 5 1 1 2 1 1 0 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 31.3 7.3 7.3 16.257 150 150 0 7.5437 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 23.3 23.3 24 31.3 31.3 23.3 31.3 31.3 31.3 12.7 7.3 18 7.3 12.7 0 26173000 0 0 0 2996300 2714400 0 0 7349900 8078500 0 0 5034100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 3 ATGGNKTKTPGPGAQSALR;IGRIEDVTPIPTDSTR;IGRIEDVTPIPTDSTRR;TPGPGAQSALR;VDVVTLGPSVR 213 81;218;219;405;429 False;False;False;False;True 84;226;227;418;443 898;899;900;901;902;903;904;905;906;907;908;909;910;911;912;913;914;915;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;5068;5069;5070;5071;5072;5073;5354;5355;5356;5357;5358;5359 471;472;473;474;475;476;477;478;479;480;481;1334;1335;1336;1337;1338;1339;1340;1341;1342;2638;2639;2772;2773;2774 477;1335;1342;2638;2772 -1 Q9SKC9 Q9SKC9 3 3 3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 sp|Q9SKC9|NDUB7_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=At2g02050 PE=1 SV=1 1 3 3 3 3 2 2 3 2 2 2 2 3 1 3 3 3 2 3 3 2 2 3 2 2 2 2 3 1 3 3 3 2 3 3 2 2 3 2 2 2 2 3 1 3 3 3 2 3 35.9 35.9 35.9 11.74 103 103 0 29.043 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 35.9 32 15.5 35.9 32 32 15.5 15.5 35.9 11.7 35.9 35.9 35.9 15.5 35.9 475220000 7906600 5680700 3677900 23991000 23940000 12584000 38730000 33651000 87439000 18203000 42571000 61439000 51046000 15267000 49097000 0 0 0 0 10322000 0 0 0 11130000 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 2 LQGNAAVPLIPK;LQGNAAVPLIPKTANA;MEVPGSSKKMIATQEEMSAAK 214 286;287;297 True;True;True 294;295;307 3418;3419;3420;3421;3422;3423;3424;3425;3426;3427;3428;3429;3430;3431;3432;3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3577;3578;3579;3580;3581;3582;3583;3584;3585;3586 1690;1691;1692;1693;1694;1695;1790 1690;1695;1790 38;39;40 1;10;17 -1 Q9SKX4 Q9SKX4 4 4 4 50S ribosomal protein L3-1, chloroplastic RPL3A sp|Q9SKX4|RK3A_ARATH 50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3A PE=2 SV=1 1 4 4 4 2 2 2 3 2 2 4 4 4 2 2 2 2 2 3 2 2 2 3 2 2 4 4 4 2 2 2 2 2 3 2 2 2 3 2 2 4 4 4 2 2 2 2 2 3 9.6 9.6 9.6 29.363 271 271 0 38.337 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5.2 5.2 5.2 5.2 5.2 5.2 9.6 9.6 9.6 5.2 5.2 5.2 5.2 5.2 9.6 2757500000 35089000 56976000 88491000 75195000 50148000 18984000 515850000 410210000 386200000 158040000 208300000 262910000 212140000 103900000 175050000 17321000 24908000 27927000 17875000 18792000 13016000 60092000 34043000 62821000 48404000 42023000 25526000 46001000 46124000 45101000 0 0 1 0 2 1 4 1 3 2 2 2 2 1 2 23 GALPGKPGNLLR;ITPAKIVGVNIPK;ITPAKIVGVNIPKN;IVGVNIPKN 215 175;239;240;242 True;True;True;True 181;247;248;250 2216;2217;2218;2219;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912;2949;2950;2951;2952;2953;2954;2955;2956;2957;2958;2959;2960;2961;2962;2963 1166;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485 1166;1427;1442;1474 -1 Q9SLF7 Q9SLF7 3 3 3 60S acidic ribosomal protein P2-2 RPP2B sp|Q9SLF7|RLA22_ARATH 60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1 1 3 3 3 1 1 1 3 3 3 3 3 3 3 1 3 2 2 2 1 1 1 3 3 3 3 3 3 3 1 3 2 2 2 1 1 1 3 3 3 3 3 3 3 1 3 2 2 2 32.2 32.2 32.2 11.444 115 115 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 32.2 885880000 8384600 4195200 9257200 55779000 59419000 42588000 189360000 174060000 111260000 27387000 22000000 131170000 20221000 9058700 21746000 0 0 0 20080000 24741000 28734000 21555000 24818000 18026000 7792600 0 14810000 6534300 7983500 7552700 1 1 0 4 3 2 2 4 3 1 1 3 1 2 0 28 LASVPSGGGGGVAVASATSGGGGGGGASAAESK;LASVPSGGGGGVAVASATSGGGGGGGASAAESKK;LASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEK 216 261;262;263 True;True;True 269;270;271 3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146 1546;1547;1548;1549;1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571;1572;1573 1551;1558;1571 -1 Q9SLJ2 Q9SLJ2 1 1 1 F20D21.23 sp|Q9SLJ2|HRD11_ARATH Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1 1 1 1 1 1 0 0 1 1 1 1 0 0 1 0 1 0 1 1 1 0 0 1 1 1 1 0 0 1 0 1 0 1 1 1 0 0 1 1 1 1 0 0 1 0 1 0 1 1 18.4 18.4 18.4 10.796 98 98 0 13.584 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 18.4 0 0 18.4 18.4 18.4 18.4 0 0 18.4 0 18.4 0 18.4 18.4 40006000 1842000 0 0 1610500 2457800 2523800 17496000 0 0 5442000 0 5844800 0 1117400 1672000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 AGLINKIGDALHIGGGNK 217 35 True 35 410;411;412;413;414;415;416;417;418 203 203 -1 Q9SMU8;Q9LDN9;Q9LDA4;Q9LHB9;P24101 Q9SMU8 6;1;1;1;1 6;1;1;1;1 6;1;1;1;1 Peroxidase 34 PER34 sp|Q9SMU8|PER34_ARATH Peroxidase 34 OS=Arabidopsis thaliana OX=3702 GN=PER34 PE=1 SV=1 5 6 6 6 5 3 3 5 3 3 6 6 6 5 5 5 4 3 5 5 3 3 5 3 3 6 6 6 5 5 5 4 3 5 5 3 3 5 3 3 6 6 6 5 5 5 4 3 5 14.2 14.2 14.2 38.832 353 353;346;346;352;354 0 168.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9.9 9.3 9.3 11.9 9.1 9.1 14.2 14.2 14.2 11.9 11.9 11.9 7.6 7.6 11.9 2254800000 34800000 22488000 29311000 122890000 63707000 81487000 212490000 233220000 172000000 130430000 236630000 501550000 187370000 74921000 151500000 17407000 18157000 27053000 36093000 30021000 45761000 15154000 27615000 21016000 37875000 46414000 47503000 43181000 47673000 40365000 2 2 1 1 3 2 5 7 4 2 5 7 4 3 4 52 DAFGNANSAR;DAFGNANSARGFPVIDR;DAFGNANSARGFPVIDRMK;MGNITPTTGTQGQIR;TPTVFDNK;TPTVFDNKYYVNLKER 218 97;98;99;298;406;407 True;True;True;True;True;True 100;101;102;308;419;420 1095;1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107;1108;1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145;1146;1147;1148;1149;1150;1151;1152;1153;1154;1155;1156;1157;1158;3587;3588;3589;3590;3591;3592;3593;3594;3595;3596;5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096 609;610;611;612;613;614;615;616;617;618;619;620;621;622;623;624;625;626;627;628;629;630;631;632;633;634;635;636;637;638;639;640;641;642;643;644;645;646;647;648;649;650;651;652;653;1791;1792;2640;2641;2642;2643;2644;2645;2646;2647 609;623;647;1791;2640;2645 41 314 -1;-1;-1;-1;-1 Q9SR70 Q9SR70 1 1 1 Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic FKBP16-4 sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP16-4 PE=1 SV=1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 1 1 1 1 7.8 7.8 7.8 24.504 230 230 0.0045455 6.0426 By MS/MS By matching By matching By matching By MS/MS By MS/MS 0 0 0 7.8 0 0 0 0 0 0 7.8 7.8 7.8 7.8 7.8 20048000 0 0 0 2628100 0 0 0 0 0 0 4154600 4572600 3043600 1868400 3781000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 VGGQRLVIVPPELAYGKK 219 442 True 456 5502;5503;5504;5505;5506;5507 2853 2853 -1 Q9SRH5;Q9SMX3 Q9SRH5;Q9SMX3 2;1 2;1 2;1 Mitochondrial outer membrane protein porin 1;Mitochondrial outer membrane protein porin 3 VDAC1;VDAC3 sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana OX=3702 GN=VDAC1 PE=1 SV=3;sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana OX=3702 GN=VDAC3 PE=1 SV=3 2 2 2 2 1 1 1 1 0 0 2 1 2 1 1 1 0 1 0 1 1 1 1 0 0 2 1 2 1 1 1 0 1 0 1 1 1 1 0 0 2 1 2 1 1 1 0 1 0 8 8 8 29.425 276 276;274 0 48.002 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3.3 3.3 3.3 3.3 0 0 8 3.3 8 3.3 3.3 3.3 0 3.3 0 48911000 1853100 1319800 2974500 3075500 0 0 15520000 6606700 6176400 2153600 2658500 5357300 0 1215100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 VGLALALKP;VKGPGLYTEIGKK 220 448;452 True;True 462;466 5593;5594;5595;5596;5597;5598;5599;5600;5601;5602;5603;5619;5620 2893;2900;2901 2893;2901 -1;-1 Q9SRX2 Q9SRX2 2 2 2 60S ribosomal protein L19-1 RPL19A sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1 1 2 2 2 0 0 0 2 1 1 2 2 2 1 0 1 0 0 0 0 0 0 2 1 1 2 2 2 1 0 1 0 0 0 0 0 0 2 1 1 2 2 2 1 0 1 0 0 0 14.5 14.5 14.5 24.606 214 214 0 27.174 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 0 0 0 14.5 13.6 13.1 14.5 14.5 14.5 13.6 0 13.1 0 0 0 109850000 0 0 0 7306900 5204700 3063500 37323000 22039000 23288000 4524600 0 7096700 0 0 0 0 0 0 2719400 0 0 3477800 3011700 3839700 0 0 0 0 0 0 0 0 0 1 0 0 1 1 2 0 0 0 0 0 0 5 GPGGDVAPVAAPAPAATPAPTAAVPKKK;LAKGPGGDVAPVAAPAPAATPAPTAAVPK 221 190;255 True;True 197;263 2360;2361;2362;2363;2364;2365;3041;3042;3043;3044;3045;3046 1203;1517;1518;1519;1520 1203;1520 -1 Q9SUI5 Q9SUI5 2 2 2 Photosystem I reaction center subunit psaK, chloroplastic PSAK sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAK PE=2 SV=2 1 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 0 1 2 2 2 2 1 1 1 1 1 1 1 1 1 0 1 2 2 2 2 1 1 1 1 1 1 1 1 1 0 1 12.3 12.3 12.3 13.206 130 130 0 11.584 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 12.3 12.3 12.3 12.3 12.3 12.3 12.3 12.3 12.3 12.3 12.3 12.3 12.3 0 12.3 203810000 4066400 6535200 5569700 15840000 7553600 2295200 46588000 42868000 33724000 3996800 7127700 15659000 3922800 0 8060500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 3 FGLAPSANR;FGLAPSANRKATAGLR 222 162;163 True;True 167;168 2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033 1085;1086;1087;1088 1085;1087 -1 Q9SUI7;Q9SUI6 Q9SUI7;Q9SUI6 5;5 5;5 5;5 Photosystem I reaction center subunit VI-1, chloroplastic;Photosystem I reaction center subunit VI-2, chloroplastic PSAH1;PSAH2 sp|Q9SUI7|PSAH1_ARATH Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH1 PE=2 SV=1;sp|Q9SUI6|PSAH2_ARATH Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH2 PE=2 2 5 5 5 1 1 1 1 2 2 5 4 5 1 2 2 2 0 4 1 1 1 1 2 2 5 4 5 1 2 2 2 0 4 1 1 1 1 2 2 5 4 5 1 2 2 2 0 4 20 20 20 15.216 145 145;145 0 61.95 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11.7 11.7 11.7 8.3 8.3 8.3 20 19.3 20 8.3 8.3 8.3 20 0 20 1268400000 778010 1591100 2255500 25080000 40491000 44840000 469940000 37168000 149100000 33824000 91190000 159420000 86735000 0 126020000 0 0 0 0 21689000 35095000 19675000 7623600 21079000 0 25396000 24485000 11288000 0 43364000 0 0 0 0 2 0 6 3 3 0 2 1 1 0 2 20 FFETFAAPFTK;FFETFAAPFTKR;FFETFAAPFTKRGLLLK;GPQEPPKLGPR;RGPQEPPKLGPR 223 159;160;161;193;334 True;True;True;True;True 164;165;166;200;345 1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012;2013;2014;2403;2404;2405;2406;2407;2408;2409;2410;4147;4148;4149;4150;4151;4152;4153;4154;4155;4156 1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1217;1218;1219;1220;1221;1222;2102;2103;2104;2105;2106;2107 1075;1077;1083;1221;2104 -1;-1 Q9SUU5;F4JUC2;F4JWS9;F4JWS8 Q9SUU5 3;1;1;1 3;1;1;1 3;1;1;1 Cytochrome b-c1 complex subunit 7-1 QCR7-1 sp|Q9SUU5|QCR71_ARATH Cytochrome b-c1 complex subunit 7-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE=1 SV=1 4 3 3 3 3 3 3 3 3 3 3 3 3 1 3 3 3 2 3 3 3 3 3 3 3 3 3 3 1 3 3 3 2 3 3 3 3 3 3 3 3 3 3 1 3 3 3 2 3 21.3 21.3 21.3 14.527 122 122;101;106;122 0 323.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 21.3 21.3 21.3 21.3 21.3 21.3 21.3 21.3 21.3 11.5 21.3 21.3 21.3 11.5 21.3 615610000 24387000 19691000 23302000 30907000 23710000 11366000 116400000 85494000 78340000 9511500 30438000 84398000 26445000 15465000 35751000 7246700 6364100 4835800 7425500 7431000 5745400 8100000 6275600 6253500 0 5684000 6892800 4870300 8588300 7811400 1 2 3 1 2 0 5 4 5 1 3 3 2 2 3 37 AFIDPKKNFLAR;EALGALPLYQR;EALGALPLYQRTLP 224 26;127;128 True;True;True 26;132;133 301;302;303;304;305;306;307;308;309;310;311;312;313;314;315;316;317;318;319;320;321;322;323;324;1536;1537;1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548;1549;1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567 162;163;164;165;166;167;168;877;878;879;880;881;882;883;884;885;886;887;888;889;890;891;892;893;894;895;896;897;898;899;900;901;902;903;904;905;906;907 168;883;902 -1;-1;-1;-1 Q9SY97 Q9SY97 1 1 1 T25B24.12 sp|Q9SY97|LHCA3_ARATH Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1 1 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 9.5 9.5 9.5 29.181 273 273 0.0046083 6.0451 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 9.5 9.5 0 9.5 9.5 9.5 9.5 9.5 9.5 9.5 9.5 9.5 72633000 0 0 0 1665700 1373700 0 12431000 9874700 6863800 3561300 6420500 6563700 9587700 6838300 7452800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 GLAGSGNPAYPGGPFFNPLGFGKDEK 225 185 True 192 2314;2315;2316;2317;2318;2319;2320;2321;2322;2323;2324 1194 1194 -1 Q9SYT0 Q9SYT0 1 1 1 Annexin D1 ANN1 sp|Q9SYT0|ANXD1_ARATH Annexin D1 OS=Arabidopsis thaliana OX=3702 GN=ANN1 PE=1 SV=1 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5 5 5 36.203 317 317 0 17.241 By MS/MS 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 VSDSVPAPSDDAEQLR 226 467 True 481 5758 2955 2955 -1 Q9SZJ5;Q94C74 Q9SZJ5;Q94C74 2;1 2;1 2;1 Serine hydroxymethyltransferase 1, mitochondrial;Serine hydroxymethyltransferase 2, mitochondrial SHM1;SHM2 sp|Q9SZJ5|GLYM1_ARATH Serine hydroxymethyltransferase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SHM1 PE=1 SV=1;sp|Q94C74|GLYM2_ARATH Serine hydroxymethyltransferase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SHM2 PE=1 SV=2 2 2 2 2 0 2 1 2 0 0 2 2 1 0 0 0 0 0 0 0 2 1 2 0 0 2 2 1 0 0 0 0 0 0 0 2 1 2 0 0 2 2 1 0 0 0 0 0 0 3.7 3.7 3.7 57.4 517 517;517 0 17.738 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 3.7 3.7 3.7 0 0 3.7 3.7 2.1 0 0 0 0 0 0 70475000 0 5329700 4477200 8741900 0 0 23795000 19795000 8337100 0 0 0 0 0 0 0 2707400 0 2436500 0 0 2185200 2395400 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 3 LIVAGASAYAR;SATLFRPKLIVAGASAYAR 227 281;345 True;True 289;356 3373;3374;3375;3376;3377;4282;4283;4284;4285;4286 1680;1681;2178 1680;2178 -1;-1 Q9T043 Q9T043 1 1 1 60S ribosomal protein L14-2 RPL14B sp|Q9T043|RL142_ARATH 60S ribosomal protein L14-2 OS=Arabidopsis thaliana OX=3702 GN=RPL14B PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 8.2 8.2 8.2 15.505 134 134 0 28.615 By MS/MS 0 0 0 0 0 0 8.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 RANLNDFDRFK 228 332 True 343 4144 2100 2100 -1 Q9T0G2 Q9T0G2 3 2 2 Cytochrome c-2 CYTC-2 sp|Q9T0G2|CYC2_ARATH Cytochrome c-2 OS=Arabidopsis thaliana OX=3702 GN=CYTC-2 PE=1 SV=1 1 3 2 2 2 1 1 1 1 2 3 2 2 1 2 3 1 2 1 2 1 1 1 1 2 2 1 1 1 1 2 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 1 1 1 24.1 14.3 14.3 12.239 112 112 0 57.433 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14.3 14.3 10.7 14.3 14.3 14.3 24.1 24.1 24.1 14.3 24.1 24.1 14.3 24.1 14.3 218180000 2802900 1841100 1072800 5961800 7965200 12643000 25616000 19238000 14965000 12530000 18235000 61768000 14912000 6165100 12467000 2419500 0 0 0 0 9312900 3066300 0 0 0 0 5543600 0 0 0 0 0 0 1 0 2 2 1 1 1 1 1 1 1 1 13 ASFDEAPPGNPK;ASFDEAPPGNPKAGEK;QGPNLNGLFGR 229 62;63;322 True;True;False 65;66;333 708;709;710;711;712;713;714;715;716;717;718;719;720;721;722;723;724;725;726;4072;4073;4074;4075;4076;4077 360;361;362;363;364;365;366;367;368;369;370;371;372;373;2075 360;365;2075 -1 Q9XFI1 Q9XFI1 1 1 1 Thioredoxin-like 1-2, chloroplastic sp|Q9XFI1|TRL12_ARATH Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g61440 PE=2 SV=1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.9 6.9 6.9 26.889 245 245 0.0085837 5.8691 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 1667200000 24379000 20488000 38096000 44691000 41314000 22528000 318760000 122080000 95661000 147780000 107320000 122440000 355670000 27008000 178940000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 2 GLDEKELAALASVGELK 230 186 True 193 2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345;2346;2347;2348 1195;1196 1195 -1 Q9XFT3 Q9XFT3 4 4 4 Oxygen-evolving enhancer protein 3-1, chloroplastic PSBQ1 sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3 1 4 4 4 4 3 4 3 2 1 4 3 4 2 4 4 1 1 1 4 3 4 3 2 1 4 3 4 2 4 4 1 1 1 4 3 4 3 2 1 4 3 4 2 4 4 1 1 1 15.2 15.2 15.2 23.866 224 224 0 56.711 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15.2 13.4 15.2 14.3 13.4 5.4 15.2 14.3 15.2 14.3 15.2 15.2 5.4 5.4 5.4 361580000 7532600 7559600 11357000 39510000 6364800 3158600 51615000 17884000 43910000 10207000 39802000 110280000 4208600 1994800 6202600 3207200 3940400 2506900 6160400 3390500 0 2348700 1900600 3604900 2977500 5806900 5594200 0 0 0 2 1 0 1 0 0 4 1 5 0 2 4 0 0 0 20 DIINVKPLIDR;DIINVKPLIDRK;DRFYLQPLPPTEAAARAK;FYLQPLPPTEAAARAKESAK 231 110;111;120;171 True;True;True;True 114;115;125;177 1327;1328;1329;1330;1331;1332;1333;1334;1335;1336;1337;1338;1339;1340;1341;1342;1343;1344;1345;1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1465;1466;1467;1468;1469;1470;1471;1472;1473;1474;1475;2123;2124;2125;2126;2127;2128;2129;2130;2131;2132;2133;2134 756;757;758;759;760;761;794;795;796;797;798;1122;1123;1124;1125;1126;1127;1128;1129;1130 757;758;795;1127 -1 Q9XJ27 Q9XJ27 2 2 2 30S ribosomal protein S9, chloroplastic RPS9 sp|Q9XJ27|RR9_ARATH 30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 2 11.5 11.5 11.5 22.577 208 208 0 51.603 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11.5 11.5 11.5 11.5 11.5 5.3 11.5 11.5 11.5 11.5 11.5 11.5 11.5 0 11.5 307750000 7103300 14004000 16268000 27075000 9856000 4513600 23560000 75778000 31081000 20630000 30851000 10756000 29789000 0 6485300 2224300 7441500 2463400 7548200 0 0 2388200 8176200 1458200 8247700 7465800 3249300 7995600 0 1801900 1 0 2 1 0 0 2 2 1 1 1 0 1 0 1 13 EGLLTRDARVVER;SRLPGGFAAQK 232 138;371 True;True 143;383 1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567;4568;4569;4570;4571 970;971;972;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339 971;2334 -1 Q9ZR03 Q9ZR03 1 1 1 Cytochrome b6-f complex iron-sulfur subunit, chloroplastic petC sp|Q9ZR03|UCRIA_ARATH Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=petC PE=1 SV=1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 8.3 8.3 8.3 24.366 229 229 0 6.2635 By MS/MS By MS/MS By MS/MS By matching 8.3 8.3 8.3 0 0 0 0 0 0 0 0 0 0 0 8.3 12808000 2310600 2908300 5386600 0 0 0 0 0 0 0 0 0 0 0 2202300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 GPAPLSLALAHADIDEAGK 233 189 True 196 2356;2357;2358;2359 1202 1202 -1 Q9ZUF6 Q9ZUF6 2 2 2 At2g05920 sp|Q9ZUF6|SBT18_ARATH Subtilisin-like protease SBT1.8 OS=Arabidopsis thaliana OX=3702 GN=SBT1.8 PE=1 SV=1 1 2 2 2 0 1 0 1 1 1 2 1 1 1 1 2 1 1 1 0 1 0 1 1 1 2 1 1 1 1 2 1 1 1 0 1 0 1 1 1 2 1 1 1 1 2 1 1 1 3.6 3.6 3.6 80.014 754 754 0 20.658 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 1.3 0 2.3 2.3 2.3 3.6 1.3 2.3 2.3 2.3 3.6 2.3 2.3 2.3 144820000 0 1109800 0 4157200 4973400 10897000 5874800 1572200 4040200 20539000 23499000 42010000 14008000 5844100 6295200 0 0 0 0 0 0 1186000 0 0 0 0 5489200 0 0 0 0 0 0 0 0 2 0 0 0 0 1 2 1 1 1 8 SPVAFSWNRF;VTVNGAPSVGISVKPSK 234 370;472 True;True 382;486 4547;4548;4549;4550;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804 2329;2975;2976;2977;2978;2979;2980;2981 2329;2976 -1 Q9ZUX4 Q9ZUX4 3 3 3 Uncharacterized protein At2g27730, mitochondrial sp|Q9ZUX4|UMP2_ARATH Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27730 PE=1 SV=1 1 3 3 3 1 2 2 3 1 2 1 1 0 2 2 2 1 0 1 1 2 2 3 1 2 1 1 0 2 2 2 1 0 1 1 2 2 3 1 2 1 1 0 2 2 2 1 0 1 38.9 38.9 38.9 11.947 113 113 0 323.31 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 12.4 25.7 25.7 38.9 13.3 26.5 13.3 12.4 0 26.5 26.5 26.5 13.3 0 13.3 191420000 3729100 5276100 11326000 13888000 11667000 9713500 21035000 5535300 0 12714000 26882000 46465000 10676000 0 12509000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 5 AAENVFIKKMEQEK;QGPGEQAAGSASEAK;QGPGEQAAGSASEAKVAGATASASAESGPK 235 4;320;321 True;True;True 4;331;332 69;70;71;72;73;4056;4057;4058;4059;4060;4061;4062;4063;4064;4065;4066;4067;4068;4069;4070;4071 65;2071;2072;2073;2074 65;2073;2074 -1 Q9ZVA4 Q9ZVA4 2 2 2 F9K20.10 sp|Q9ZVA4|EP1L3_ARATH EP1-like glycoprotein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g78850 PE=1 SV=1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 1 0 2 1 1 1 2 2 2 2 2 2 1 2 2 1 0 2 1 1 1 2 2 2 2 2 2 1 2 2 1 0 2 4.1 4.1 4.1 49.051 441 441 0 13.698 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 0 4.1 229820000 5686000 4394700 3672300 23877000 13319000 12926000 15822000 20776000 15477000 4081200 29258000 64966000 5883400 0 9677400 3901300 3492900 0 4872600 0 4583100 0 0 0 0 4320800 5819300 0 0 0 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 4 TGDSSLVAYVKAPNANK;TGDSSLVAYVKAPNANKK 236 387;388 True;True 400;401 4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775;4776 2406;2407;2408;2409;2410 2406;2407 -1 Q9ZVL6 Q9ZVL6 2 2 2 UPF0603 protein At1g54780, chloroplastic sp|Q9ZVL6|U603_ARATH UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g54780 PE=1 SV=1 1 2 2 2 0 0 0 0 1 0 1 1 0 1 2 0 1 1 2 0 0 0 0 1 0 1 1 0 1 2 0 1 1 2 0 0 0 0 1 0 1 1 0 1 2 0 1 1 2 7.4 7.4 7.4 31.138 285 285 0 17.168 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 0 6.3 0 6.3 6.3 0 7.4 7.4 0 7.4 7.4 7.4 77909000 0 0 0 0 1752800 0 6407700 5552400 0 10766000 14472000 0 13809000 13021000 12128000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 1 5 RLVAAIDGQPDPGGPTVK;RLVAAIDGQPDPGGPTVKDSK 237 336;337 True;True 347;348 4189;4190;4191;4192;4193;4194;4195;4196;4197;4198;4199;4200;4201 2124;2125;2126;2127;2128 2125;2128 -1 REV__Q8RXD9 REV__Q8RXD9 1 1 1 sp|Q8RXD9|DPE2_ARATH 4-alpha-glucanotransferase DPE2 OS=Arabidopsis thaliana OX=3702 GN=DPE2 PE=1 SV=1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 109.78 955 955 0.0046948 6.1124 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 382790000 0 0 0 5233600 4545100 10053000 12423000 18817000 8439100 49812000 84420000 52488000 99463000 18997000 18099000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 3 LDFDWIGKEELEEQSLPISR + 238 265 True 273 3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181 1594;1595;1596 1594 -1 REV__Q9LSX5 REV__Q9LSX5 1 1 1 tr|Q9LSX5|Q9LSX5_ARATH Disease resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN=MUF8.3 PE=1 SV=1 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 120.55 1068 1068 0.0089286 5.9701 By MS/MS By matching By MS/MS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100150000 0 0 0 0 0 0 58719000 10739000 30689000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 LTLGIISEPISEINKSWLVLSTICPPVHRK + 239 291 True 299 3481;3482;3483;3484;3485 1739;1740 1739 -1