MetaMorpheus: version 1.0.1
Time to run task: 01:06:13.2320630


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Target inter-crosslinks within 1% FDR: 222
Target intra-crosslinks within 1% FDR: 30
Target single peptides within 1% FDR: 9834
Target loop-linked peptides within 1% FDR: 37
Target deadend peptides within 1% FDR: 2022



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:03.1768139
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 161671


Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:22.0587115

Engine type: CrosslinkSearchEngine
Time to run engine: 00:09:38.6925879

Engine type: CrosslinkSearchEngine
Time to run engine: 00:09:10.4818267

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:36.4315593

Engine type: CrosslinkSearchEngine
Time to run engine: 00:09:07.6884428

Engine type: CrosslinkSearchEngine
Time to run engine: 00:08:20.5341883

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:12.3861815

Engine type: CrosslinkSearchEngine
Time to run engine: 00:10:17.4807669

Engine type: CrosslinkSearchEngine
Time to run engine: 00:07:27.9341720

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:06.4004947
crosslinks within 1% FDR: 1016
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.8451156251758596
*       Area Under Curve:  0.8870163677126054
*       Area under Precision recall Curve:  0.9139358572874752
*       F1Score:  0.8840804614418082
*       LogLoss:  1.0268347587175566
*       LogLossReduction:  -0.09626402988353486
*       PositivePrecision:  0.8581450619599605
*       PositiveRecall:  0.9118019480519481
*       NegativePrecision:  0.8172394678492239
*       NegativeRecall:  0.7223958333333333
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:09.7694772
PSMs within 1% FDR: 11645
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9930010111288432
*       Area Under Curve:  0.9984222953973736
*       Area under Precision recall Curve:  0.9994139276297084
*       F1Score:  0.9957323671399777
*       LogLoss:  0.07342361535677064
*       LogLossReduction:  0.8922097213083726
*       PositivePrecision:  0.9950625417532114
*       PositiveRecall:  0.9964036537760084
*       NegativePrecision:  0.9835827354531019
*       NegativeRecall:  0.9775620008743029
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0060494
skippeps within 1% FDR: 9834
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0000909
skippeps within 1% FDR: 37
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0013939
skippeps within 1% FDR: 2022
Delta Score Used for FDR Analysis: False



