MetaMorpheus: version 1.0.1
Time to run task: 00:10:55.3967669


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Target inter-crosslinks within 1% FDR: 21
Target intra-crosslinks within 1% FDR: 12
Target single peptides within 1% FDR: 4228
Target loop-linked peptides within 1% FDR: 43
Target deadend peptides within 1% FDR: 536



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:02.8961401
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 161021


Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:40.2476333

Engine type: CrosslinkSearchEngine
Time to run engine: 00:04:51.2514219

Engine type: CrosslinkSearchEngine
Time to run engine: 00:01:02.7833891

Engine type: CrosslinkSearchEngine
Time to run engine: 00:01:06.3558398

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:04.9597019
crosslinks within 1% FDR: 301
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.7935229327634392
*       Area Under Curve:  0.7095951084608073
*       Area under Precision recall Curve:  0.8404563616750607
*       F1Score:  0.8669828609409865
*       LogLoss:  Infinity
*       LogLossReduction:  -Infinity
*       PositivePrecision:  0.8327776440378751
*       PositiveRecall:  0.9048699334543255
*       NegativePrecision:  0.6377450980392156
*       NegativeRecall:  0.4658208020050125
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:07.1284993
PSMs within 1% FDR: 4784
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9936687600560903
*       Area Under Curve:  0.9996791627582349
*       Area under Precision recall Curve:  0.9998030718904843
*       F1Score:  0.9950492095221172
*       LogLoss:  0.04968971813906526
*       LogLossReduction:  0.9473369289860398
*       PositivePrecision:  0.9944785140673023
*       PositiveRecall:  0.9956221198156682
*       NegativePrecision:  0.9922364842451264
*       NegativeRecall:  0.9902120457303443
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0030413
skippeps within 1% FDR: 4228
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0000759
skippeps within 1% FDR: 43
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0003868
skippeps within 1% FDR: 536
Delta Score Used for FDR Analysis: False



