MetaMorpheus: version 1.0.1
Total time: 00:29:46.4393115




Time to run task: 00:29:46.3560218


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Target inter-crosslinks within 1% FDR: 49
Target intra-crosslinks within 1% FDR: 36
Target single peptides within 1% FDR: 5002
Target loop-linked peptides within 1% FDR: 60
Target deadend peptides within 1% FDR: 1121



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:05.1341159
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 164438


Engine type: CrosslinkSearchEngine
Time to run engine: 00:01:56.6127580

Engine type: CrosslinkSearchEngine
Time to run engine: 00:08:30.7832586

Engine type: CrosslinkSearchEngine
Time to run engine: 00:07:33.2165376

Engine type: CrosslinkSearchEngine
Time to run engine: 00:06:11.3608723

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:05.8404846
crosslinks within 1% FDR: 480
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.8381198347107439
*       Area Under Curve:  0.9081408796369864
*       Area under Precision recall Curve:  0.8488170432894425
*       F1Score:  0.8392697098166523
*       LogLoss:  Infinity
*       LogLossReduction:  -Infinity
*       PositivePrecision:  0.8034262524198965
*       PositiveRecall:  0.8793103448275862
*       NegativePrecision:  0.8781551494234842
*       NegativeRecall:  0.7999871991807477
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:07.7226064
PSMs within 1% FDR: 6235
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9939252336448599
*       Area Under Curve:  0.9996685016366222
*       Area under Precision recall Curve:  0.9998029424879551
*       F1Score:  0.9954358805231693
*       LogLoss:  0.06504190556720621
*       LogLossReduction:  0.9293141557823031
*       PositivePrecision:  0.9945650722772326
*       PositiveRecall:  0.996309870096753
*       NegativePrecision:  0.9926582015552396
*       NegativeRecall:  0.9891939876380618
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0038596
skippeps within 1% FDR: 5002
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0000868
skippeps within 1% FDR: 60
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0008447
skippeps within 1% FDR: 1121
Delta Score Used for FDR Analysis: False




