MetaMorpheus: version 1.0.1
Time to run task: 00:04:29.4102776


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Target inter-crosslinks within 1% FDR: 0
Target intra-crosslinks within 1% FDR: 140
Target single peptides within 1% FDR: 5452
Target loop-linked peptides within 1% FDR: 1143
Target deadend peptides within 1% FDR: 2487



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:00.8371621
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 34850


Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:09.0148679

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:32.7422908

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:31.1839410

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:26.5751039

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:05.4888976
crosslinks within 1% FDR: 2098
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.8602602331255083
*       Area Under Curve:  0.9128366067290328
*       Area under Precision recall Curve:  0.9166944947475894
*       F1Score:  0.8847262489876051
*       LogLoss:  0.8314674471813958
*       LogLossReduction:  0.14727491745702978
*       PositivePrecision:  0.8654602528498315
*       PositiveRecall:  0.905363694451315
*       NegativePrecision:  0.8535645144549376
*       NegativeRecall:  0.7946674431869782
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:08.0899546
PSMs within 1% FDR: 9126
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9940337342182692
*       Area Under Curve:  0.9995526577544517
*       Area under Precision recall Curve:  0.9997393200375568
*       F1Score:  0.9953982562047688
*       LogLoss:  0.05651542249615407
*       LogLossReduction:  0.9396388037438355
*       PositivePrecision:  0.9943018055726931
*       PositiveRecall:  0.9965009406711195
*       NegativePrecision:  0.9935583420539466
*       NegativeRecall:  0.9895004269792066
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0227900
skippeps within 1% FDR: 5452
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0011265
skippeps within 1% FDR: 1143
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0023443
skippeps within 1% FDR: 2487
Delta Score Used for FDR Analysis: False



