MetaMorpheus: version 1.0.1
Time to run task: 00:03:09.7959035


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Target inter-crosslinks within 1% FDR: 0
Target intra-crosslinks within 1% FDR: 171
Target single peptides within 1% FDR: 6273
Target loop-linked peptides within 1% FDR: 848
Target deadend peptides within 1% FDR: 1735



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Engine Results:

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:06.2979552

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:13.1888643

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:13.2140636

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:14.0677705

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:04.5237081
crosslinks within 1% FDR: 2314
Delta Score Used for FDR Analysis: False

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*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9091967663149509
*       Area Under Curve:  0.960278004073285
*       Area under Precision recall Curve:  0.9068950706451399
*       F1Score:  0.886144662857753
*       LogLoss:  0.6920680308414231
*       LogLossReduction:  0.2830858151111277
*       PositivePrecision:  0.8686068051036162
*       PositiveRecall:  0.9044200997538541
*       NegativePrecision:  0.9370524058325733
*       NegativeRecall:  0.9122562534963637
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:08.0332379
PSMs within 1% FDR: 8910
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9952813013926938
*       Area Under Curve:  0.999565329025543
*       Area under Precision recall Curve:  0.9996132770191717
*       F1Score:  0.99614213514366
*       LogLoss:  0.03706924991695235
*       LogLossReduction:  0.9615724199569069
*       PositivePrecision:  0.9939862640947977
*       PositiveRecall:  0.9983085950177802
*       NegativePrecision:  0.9973370885434002
*       NegativeRecall:  0.9905410504809427
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0051696
skippeps within 1% FDR: 6273
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0007992
skippeps within 1% FDR: 848
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0018277
skippeps within 1% FDR: 1735
Delta Score Used for FDR Analysis: False



