MetaMorpheus: version 1.0.1
Total time: 00:04:12.9490814




Time to run task: 00:04:12.8804326


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Target inter-crosslinks within 1% FDR: 0
Target intra-crosslinks within 1% FDR: 19
Target single peptides within 1% FDR: 2080
Target loop-linked peptides within 1% FDR: 736
Target deadend peptides within 1% FDR: 1681



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:00.0983324
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 1000


Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:01.1094319

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:01.0663783

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:01.0520773

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:04.7255973
crosslinks within 1% FDR: 952
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9297909886725744
*       Area Under Curve:  0.9552522303996148
*       Area under Precision recall Curve:  0.9324602230033657
*       F1Score:  0.934300869893147
*       LogLoss:  Infinity
*       LogLossReduction:  -Infinity
*       PositivePrecision:  0.9124959965837515
*       PositiveRecall:  0.9572329043842585
*       NegativePrecision:  0.9508706418290453
*       NegativeRecall:  0.8998434004474273
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:05.7521613
PSMs within 1% FDR: 4452
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9944532473188104
*       Area Under Curve:  0.9997739019278644
*       Area under Precision recall Curve:  0.9999606163449025
*       F1Score:  0.9967463477694304
*       LogLoss:  0.08143588875964189
*       LogLossReduction:  0.8654858163274215
*       PositivePrecision:  0.9958208620953242
*       PositiveRecall:  0.9976742020700706
*       NegativePrecision:  0.9865371055878724
*       NegativeRecall:  0.9759642735237228
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0013891
skippeps within 1% FDR: 2080
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0003334
skippeps within 1% FDR: 736
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0008123
skippeps within 1% FDR: 1681
Delta Score Used for FDR Analysis: False




