MetaMorpheus: version 1.0.1
Total time: 00:18:56.1680451




Time to run task: 00:18:56.0280774


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Target inter-crosslinks within 1% FDR: 61
Target intra-crosslinks within 1% FDR: 207
Target single peptides within 1% FDR: 6246
Target loop-linked peptides within 1% FDR: 25
Target deadend peptides within 1% FDR: 811



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:02.7333924
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 158910


Engine type: CrosslinkSearchEngine
Time to run engine: 00:01:00.2050528

Engine type: CrosslinkSearchEngine
Time to run engine: 00:03:44.0568287

Engine type: CrosslinkSearchEngine
Time to run engine: 00:03:23.1437313

Engine type: CrosslinkSearchEngine
Time to run engine: 00:02:18.7625869

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:14.0818838
crosslinks within 1% FDR: 1303
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.940420819490587
*       Area Under Curve:  0.9333720292173544
*       Area under Precision recall Curve:  0.9360280869250388
*       F1Score:  0.9558422327012746
*       LogLoss:  Infinity
*       LogLossReduction:  -Infinity
*       PositivePrecision:  0.9343431912620516
*       PositiveRecall:  0.9783966342442489
*       NegativePrecision:  0.9543290522108102
*       NegativeRecall:  0.8669182280823502
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:18.2622707
PSMs within 1% FDR: 7111
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9914859067121787
*       Area Under Curve:  0.9983684633986207
*       Area under Precision recall Curve:  0.9990093964860596
*       F1Score:  0.9942231073586238
*       LogLoss:  0.08185471823430036
*       LogLossReduction:  0.9016105386350044
*       PositivePrecision:  0.9931351959334168
*       PositiveRecall:  0.9953161592505855
*       NegativePrecision:  0.9868848741990469
*       NegativeRecall:  0.9807932753220705
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0051811
skippeps within 1% FDR: 6246
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0000672
skippeps within 1% FDR: 25
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0008430
skippeps within 1% FDR: 811
Delta Score Used for FDR Analysis: False




