MetaMorpheus: version 1.0.1
Time to run task: 00:19:17.2580282


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Target inter-crosslinks within 1% FDR: 97
Target intra-crosslinks within 1% FDR: 96
Target single peptides within 1% FDR: 8321
Target loop-linked peptides within 1% FDR: 52
Target deadend peptides within 1% FDR: 1425



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:02.7510017
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 163463


Engine type: CrosslinkSearchEngine
Time to run engine: 00:02:59.9164236

Engine type: CrosslinkSearchEngine
Time to run engine: 00:03:32.7278104

Engine type: CrosslinkSearchEngine
Time to run engine: 00:03:18.2108364

Engine type: CrosslinkSearchEngine
Time to run engine: 00:02:53.2804152

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:06.5634817
crosslinks within 1% FDR: 1779
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9212708924629455
*       Area Under Curve:  0.9123113031338183
*       Area under Precision recall Curve:  0.9364648236950418
*       F1Score:  0.9461066185851904
*       LogLoss:  0.8691467102838718
*       LogLossReduction:  -0.012772481199981884
*       PositivePrecision:  0.930402652493375
*       PositiveRecall:  0.9624561452880809
*       NegativePrecision:  0.896186965354015
*       NegativeRecall:  0.8161279985350668
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:09.1475966
PSMs within 1% FDR: 9813
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9923442760358058
*       Area Under Curve:  0.9995525990464821
*       Area under Precision recall Curve:  0.9998822252285718
*       F1Score:  0.995185631432207
*       LogLoss:  0.07085587901146044
*       LogLossReduction:  0.9033475893105402
*       PositivePrecision:  0.9942286186810968
*       PositiveRecall:  0.9961447387011481
*       NegativePrecision:  0.9850019826553146
*       NegativeRecall:  0.9776674785178698
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0057154
skippeps within 1% FDR: 8321
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0000915
skippeps within 1% FDR: 52
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0011347
skippeps within 1% FDR: 1425
Delta Score Used for FDR Analysis: False



