MetaMorpheus: version 1.0.1
Time to run task: 00:08:59.7469610


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Target inter-crosslinks within 1% FDR: 365
Target intra-crosslinks within 1% FDR: 65
Target single peptides within 1% FDR: 4883
Target loop-linked peptides within 1% FDR: 40
Target deadend peptides within 1% FDR: 1070



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Engine Results:

Engine type: IndexingEngine
Time to run engine: 00:00:02.9635945
		fragmentIndexDict.Count: 30000001
		peptideIndex.Count: 159992


Engine type: CrosslinkSearchEngine
Time to run engine: 00:01:16.0540094

Engine type: CrosslinkSearchEngine
Time to run engine: 00:01:07.7608815

Engine type: CrosslinkSearchEngine
Time to run engine: 00:01:20.6661882

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:56.1468079

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:08.0105973
crosslinks within 1% FDR: 2036
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9578046679379271
*       Area Under Curve:  0.9675328348260193
*       Area under Precision recall Curve:  0.9547453426128978
*       F1Score:  0.9629922984883466
*       LogLoss:  Infinity
*       LogLossReduction:  -Infinity
*       PositivePrecision:  0.9458785007559719
*       PositiveRecall:  0.9807888673613657
*       NegativePrecision:  0.9744589725208859
*       NegativeRecall:  0.9285850039557235
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:09.5811848
PSMs within 1% FDR: 5953
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9943456229897633
*       Area Under Curve:  0.9997134739410987
*       Area under Precision recall Curve:  0.9998461449895476
*       F1Score:  0.9957363010104888
*       LogLoss:  0.05519972973870076
*       LogLossReduction:  0.9401492087758072
*       PositivePrecision:  0.9950294148944762
*       PositiveRecall:  0.9964443177326131
*       NegativePrecision:  0.9929981604636182
*       NegativeRecall:  0.9902234555141219
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0141369
skippeps within 1% FDR: 4883
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0001105
skippeps within 1% FDR: 40
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0010341
skippeps within 1% FDR: 1070
Delta Score Used for FDR Analysis: False



