<?xml version="1.0" encoding="UTF-8"?>
 <msms_pipeline_analysis date="2023-09-24T22:29:55" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v120.xsd" summary_xml="/Volumes/Omics-Shared/Edward/20230912_Boulder_D2O/data/atr/day25/mzml/20230909_JC_Boulder_ATR_time25.pep.xml">
 <msms_run_summary base_name="/Volumes/Omics-Shared/Edward/20230912_Boulder_D2O/data/atr/day25/mzml/20230909_JC_Boulder_ATR_time25" msManufacturer="UNKNOWN" msModel="UNKNOWN" raw_data_type="raw" raw_data=".mzML.gz">
 <sample_enzyme name="Trypsin">
  <specificity cut="KR" no_cut="P" sense="C"/>
 </sample_enzyme>
 <search_summary base_name="/Volumes/Omics-Shared/Edward/20230912_Boulder_D2O/data/atr/day25/mzml/20230909_JC_Boulder_ATR_time25" search_engine="Comet" search_engine_version="2022.01 rev. 0" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1">
  <search_database local_path="/Volumes/Omics-Shared/Edward/20230912_Boulder_D2O/database/2023-04-26-reviewed-isoforms-contam-UP000000589.fas" type="AA"/>
  <enzymatic_search_constraint enzyme="Trypsin" max_num_internal_cleavages="2" min_number_termini="1"/>
  <aminoacid_modification aminoacid="M" massdiff="15.994900" mass="147.035385" variable="Y" symbol="*"/>
  <aminoacid_modification aminoacid="C" massdiff="57.021464" mass="160.030649" variable="N"/>
  <parameter name="# comet_version" value="2022.01 rev. 0"/>
  <parameter name="activation_method" value="ALL"/>
  <parameter name="add_A_alanine" value="0.000000"/>
  <parameter name="add_B_user_amino_acid" value="0.000000"/>
  <parameter name="add_C_cysteine" value="57.021464"/>
  <parameter name="add_Cterm_peptide" value="0.000000"/>
  <parameter name="add_Cterm_protein" value="0.000000"/>
  <parameter name="add_D_aspartic_acid" value="0.000000"/>
  <parameter name="add_E_glutamic_acid" value="0.000000"/>
  <parameter name="add_F_phenylalanine" value="0.000000"/>
  <parameter name="add_G_glycine" value="0.000000"/>
  <parameter name="add_H_histidine" value="0.000000"/>
  <parameter name="add_I_isoleucine" value="0.000000"/>
  <parameter name="add_J_user_amino_acid" value="0.000000"/>
  <parameter name="add_K_lysine" value="0.000000"/>
  <parameter name="add_L_leucine" value="0.000000"/>
  <parameter name="add_M_methionine" value="0.000000"/>
  <parameter name="add_N_asparagine" value="0.000000"/>
  <parameter name="add_Nterm_peptide" value="0.000000"/>
  <parameter name="add_Nterm_protein" value="0.000000"/>
  <parameter name="add_O_pyrrolysine" value="0.000000"/>
  <parameter name="add_P_proline" value="0.000000"/>
  <parameter name="add_Q_glutamine" value="0.000000"/>
  <parameter name="add_R_arginine" value="0.000000"/>
  <parameter name="add_S_serine" value="0.000000"/>
  <parameter name="add_T_threonine" value="0.000000"/>
  <parameter name="add_U_selenocysteine" value="0.000000"/>
  <parameter name="add_V_valine" value="0.000000"/>
  <parameter name="add_W_tryptophan" value="0.000000"/>
  <parameter name="add_X_user_amino_acid" value="0.000000"/>
  <parameter name="add_Y_tyrosine" value="0.000000"/>
  <parameter name="add_Z_user_amino_acid" value="0.000000"/>
  <parameter name="allowed_missed_cleavage" value="2"/>
  <parameter name="clear_mz_range" value="127.500000 131.500000"/>
  <parameter name="clip_nterm_methionine" value="1"/>
  <parameter name="database_name" value="/Volumes/Omics-Shared/Edward/20230912_Boulder_D2O/database/2023-04-26-reviewed-isoforms-contam-UP000000589.fas"/>
  <parameter name="decoy_prefix" value="DECOY_"/>
  <parameter name="decoy_search" value="1"/>
  <parameter name="digest_mass_range" value="600.000000 5000.000000"/>
  <parameter name="equal_I_and_L" value="1"/>
  <parameter name="fragment_bin_offset" value="0.000000"/>
  <parameter name="fragment_bin_tol" value="0.020000"/>
  <parameter name="isotope_error" value="3"/>
  <parameter name="mass_offsets" value=""/>
  <parameter name="mass_type_fragment" value="1"/>
  <parameter name="mass_type_parent" value="1"/>
  <parameter name="max_duplicate_proteins" value="20"/>
  <parameter name="max_fragment_charge" value="3"/>
  <parameter name="max_precursor_charge" value="6"/>
  <parameter name="max_variable_mods_in_peptide" value="5"/>
  <parameter name="minimum_intensity" value="0.000000"/>
  <parameter name="minimum_peaks" value="10"/>
  <parameter name="ms_level" value="2"/>
  <parameter name="nucleotide_reading_frame" value="0"/>
  <parameter name="num_enzyme_termini" value="1"/>
  <parameter name="num_output_lines" value="5"/>
  <parameter name="num_results" value="100"/>
  <parameter name="num_threads" value="0"/>
  <parameter name="output_mzidentmlfile" value="0"/>
  <parameter name="output_pepxmlfile" value="1"/>
  <parameter name="output_percolatorfile" value="0"/>
  <parameter name="output_sqtfile" value="0"/>
  <parameter name="output_suffix" value=""/>
  <parameter name="output_txtfile" value="0"/>
  <parameter name="override_charge" value="0"/>
  <parameter name="peff_format" value="0"/>
  <parameter name="peff_obo" value=""/>
  <parameter name="peptide_length_range" value="5 63"/>
  <parameter name="peptide_mass_tolerance" value="10.000000"/>
  <parameter name="peptide_mass_units" value="2"/>
  <parameter name="precursor_NL_ions" value=""/>
  <parameter name="precursor_charge" value="0 0"/>
  <parameter name="precursor_tolerance_type" value="1"/>
  <parameter name="print_expect_score" value="1"/>
  <parameter name="remove_precursor_peak" value="0"/>
  <parameter name="remove_precursor_tolerance" value="1.500000"/>
  <parameter name="require_variable_mod" value="0"/>
  <parameter name="sample_enzyme_number" value="1"/>
  <parameter name="scan_range" value="0 0"/>
  <parameter name="search_enzyme2_number" value="0"/>
  <parameter name="search_enzyme_number" value="1"/>
  <parameter name="spectrum_batch_size" value="15000"/>
  <parameter name="theoretical_fragment_ions" value="0"/>
  <parameter name="use_A_ions" value="0"/>
  <parameter name="use_B_ions" value="1"/>
  <parameter name="use_C_ions" value="0"/>
  <parameter name="use_NL_ions" value="0"/>
  <parameter name="use_X_ions" value="0"/>
  <parameter name="use_Y_ions" value="1"/>
  <parameter name="use_Z1_ions" value="0"/>
  <parameter name="use_Z_ions" value="0"/>
  <parameter name="variable_mod01" value=" 15.9949 M 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod02" value=" 0.0 X 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod03" value=" 0.0 X 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod04" value=" 0.0 X 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod05" value=" 0.0 X 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod06" value=" 0.0 X 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod07" value=" 0.0 X 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod08" value=" 0.0 X 0 3 -1 0 0 0.0"/>
  <parameter name="variable_mod09" value=" 0.0 X 0 3 -1 0 0 0.0"/>
 </search_summary>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.03838.03838.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=3838" start_scan="3838" end_scan="3838" precursor_neutral_mass="987.486197" assumed_charge="3" index="1" retention_time_sec="887.8">
  <search_result>
   <search_hit hit_rank="1" peptide="AYATEPHAK" peptide_prev_aa="R" peptide_next_aa="K" protein="sp|P48787|TNNI3_MOUSE" num_tot_proteins="1" num_matched_ions="10" tot_num_ions="32" calc_neutral_pep_mass="986.482145" massdiff="1.004052" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="24316">
    <search_score name="xcorr" value="1.707"/>
    <search_score name="deltacn" value="0.423"/>
    <search_score name="spscore" value="110.3"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="1.22E-03"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="AHPETAYAK" peptide_prev_aa="R" peptide_next_aa="K" protein="DECOY_sp|P48787|TNNI3_MOUSE" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="32" calc_neutral_pep_mass="986.482145" massdiff="1.004052" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="24316">
    <alternative_protein protein="DECOY_sp|P48787|TNNI3_MOUSE"/>
    <search_score name="xcorr" value="0.984"/>
    <search_score name="deltacn" value="0.132"/>
    <search_score name="spscore" value="41.1"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="1.80E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="AYAVSYRSA" peptide_prev_aa="R" peptide_next_aa="Q" protein="DECOY_sp|P70170-2|ABCC9_MOUSE" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="32" calc_neutral_pep_mass="986.482145" massdiff="1.004052" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="24316">
    <alternative_protein protein="DECOY_sp|P70170-2|ABCC9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P70170-3|ABCC9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P70170|ABCC9_MOUSE"/>
    <search_score name="xcorr" value="0.855"/>
    <search_score name="deltacn" value="0.008"/>
    <search_score name="spscore" value="21.1"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="6.70E+00"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="PHVHPNMR" peptide_prev_aa="S" peptide_next_aa="L" protein="DECOY_sp|Q3V1I0|LYG2_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="28" calc_neutral_pep_mass="986.486853" massdiff="0.999343" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="24316">
    <alternative_protein protein="DECOY_sp|Q3V1I0|LYG2_MOUSE"/>
    <search_score name="xcorr" value="0.848"/>
    <search_score name="deltacn" value="0.058"/>
    <search_score name="spscore" value="19.2"/>
    <search_score name="sprank" value="12"/>
    <search_score name="expect" value="7.17E+00"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="SFAEPPPSR" peptide_prev_aa="V" peptide_next_aa="G" protein="DECOY_sp|Q91YE8-2|SYNP2_MOUSE" num_tot_proteins="2" num_matched_ions="5" tot_num_ions="32" calc_neutral_pep_mass="986.482145" massdiff="1.004052" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="24316">
    <alternative_protein protein="DECOY_sp|Q91YE8-2|SYNP2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q91YE8|SYNP2_MOUSE"/>
    <search_score name="xcorr" value="0.799"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="19.4"/>
    <search_score name="sprank" value="11"/>
    <search_score name="expect" value="1.18E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.04147.04147.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=4147" start_scan="4147" end_scan="4147" precursor_neutral_mass="1536.656393" assumed_charge="3" index="2" retention_time_sec="959.3">
  <search_result>
   <search_hit hit_rank="1" peptide="EGDETDLTTQEQLG" peptide_prev_aa="R" peptide_next_aa="L" protein="DECOY_sp|Q8CJ40-2|CROCC_MOUSE" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="52" calc_neutral_pep_mass="1534.663476" massdiff="1.992917" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="11218">
    <alternative_protein protein="DECOY_sp|Q8CJ40-2|CROCC_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CJ40-3|CROCC_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CJ40|CROCC_MOUSE"/>
    <search_score name="xcorr" value="0.869"/>
    <search_score name="deltacn" value="0.036"/>
    <search_score name="spscore" value="15.2"/>
    <search_score name="sprank" value="10"/>
    <search_score name="expect" value="3.44E+00"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="SKEGDTEETPEDSL" peptide_prev_aa="K" peptide_next_aa="T" protein="sp|Q8BMQ2-2|TF3C4_MOUSE" num_tot_proteins="2" num_matched_ions="5" tot_num_ions="52" calc_neutral_pep_mass="1535.647492" massdiff="1.008901" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="11218">
    <alternative_protein protein="sp|Q8BMQ2|TF3C4_MOUSE"/>
    <search_score name="xcorr" value="0.838"/>
    <search_score name="deltacn" value="0.043"/>
    <search_score name="spscore" value="27.1"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="4.90E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="MSGPNGDLGMPVDAGT" peptide_prev_aa="-" peptide_next_aa="E" protein="sp|P58686|BBLN_MOUSE" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1533.643929" massdiff="3.012464" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="11218">
    <modification_info modified_peptide="MSGPNGDLGM[147]PVDAGT">
     <mod_aminoacid_mass position="10" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="0.802"/>
    <search_score name="deltacn" value="0.123"/>
    <search_score name="spscore" value="5.2"/>
    <search_score name="sprank" value="65"/>
    <search_score name="expect" value="7.33E+00"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="SKTNESEFGMRMS" peptide_prev_aa="K" peptide_next_aa="T" protein="sp|Q69Z69-3|ESCO1_MOUSE" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1534.639163" massdiff="2.017230" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="11218">
    <alternative_protein protein="sp|Q69Z69|ESCO1_MOUSE"/>
    <modification_info modified_peptide="SKTNESEFGM[147]RM[147]S">
     <mod_aminoacid_mass position="10" mass="147.035385" variable="15.994900" source="param"/>
     <mod_aminoacid_mass position="12" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="0.703"/>
    <search_score name="deltacn" value="0.007"/>
    <search_score name="spscore" value="10.0"/>
    <search_score name="sprank" value="34"/>
    <search_score name="expect" value="2.23E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="KGMATCFAYGQTGSG" peptide_prev_aa="R" peptide_next_aa="K" protein="sp|Q8C0N1|KIF2B_MOUSE" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1534.654449" massdiff="2.001944" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="11218">
    <modification_info modified_peptide="KGMATCFAYGQTGSG">
     <mod_aminoacid_mass position="6" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="0.698"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="1.8"/>
    <search_score name="sprank" value="91"/>
    <search_score name="expect" value="2.37E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.04233.04233.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=4233" start_scan="4233" end_scan="4233" precursor_neutral_mass="922.471121" assumed_charge="3" index="3" retention_time_sec="979.1">
  <search_result>
   <search_hit hit_rank="1" peptide="EHAALEPR" peptide_prev_aa="R" peptide_next_aa="H" protein="sp|Q99KI0|ACON_MOUSE" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="28" calc_neutral_pep_mass="921.466829" massdiff="1.004292" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="32688">
    <search_score name="xcorr" value="1.496"/>
    <search_score name="deltacn" value="0.113"/>
    <search_score name="spscore" value="156.5"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="3.05E-01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="HSPSLEPR" peptide_prev_aa="A" peptide_next_aa="T" protein="sp|O88427-2|CAC1H_MOUSE" num_tot_proteins="2" num_matched_ions="8" tot_num_ions="28" calc_neutral_pep_mass="921.466829" massdiff="1.004292" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32688">
    <alternative_protein protein="sp|O88427|CAC1H_MOUSE"/>
    <search_score name="xcorr" value="1.327"/>
    <search_score name="deltacn" value="0.174"/>
    <search_score name="spscore" value="116.3"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="1.24E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="TGIKMMAR" peptide_prev_aa="A" peptide_next_aa="V" protein="DECOY_sp|Q4U2R1-2|HERC2_MOUSE" num_tot_proteins="2" num_matched_ions="6" tot_num_ions="28" calc_neutral_pep_mass="922.472828" massdiff="-0.001707" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="32688">
    <alternative_protein protein="DECOY_sp|Q4U2R1-2|HERC2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q4U2R1|HERC2_MOUSE"/>
    <modification_info modified_peptide="TGIKMM[147]AR">
     <mod_aminoacid_mass position="6" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="1.096"/>
    <search_score name="deltacn" value="0.031"/>
    <search_score name="spscore" value="67.7"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="8.33E+00"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="QPQPAEPR" peptide_prev_aa="L" peptide_next_aa="L" protein="DECOY_sp|Q7TT18-2|MCAF1_MOUSE" num_tot_proteins="2" num_matched_ions="6" tot_num_ions="28" calc_neutral_pep_mass="921.466829" massdiff="1.004292" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32688">
    <alternative_protein protein="DECOY_sp|Q7TT18-2|MCAF1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q7TT18|MCAF1_MOUSE"/>
    <search_score name="xcorr" value="1.062"/>
    <search_score name="deltacn" value="0.013"/>
    <search_score name="spscore" value="66.7"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="1.10E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="TYVSAQPR" peptide_prev_aa="E" peptide_next_aa="Y" protein="DECOY_sp|P26954|IL3B2_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="28" calc_neutral_pep_mass="920.471580" massdiff="1.999541" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32688">
    <alternative_protein protein="DECOY_sp|P26954|IL3B2_MOUSE"/>
    <search_score name="xcorr" value="1.049"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="51.8"/>
    <search_score name="sprank" value="13"/>
    <search_score name="expect" value="1.23E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.04236.04236.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=4236" start_scan="4236" end_scan="4236" precursor_neutral_mass="1228.588766" assumed_charge="3" index="4" retention_time_sec="979.6">
  <search_result>
   <search_hit hit_rank="1" peptide="TFETSQLESGK" peptide_prev_aa="R" peptide_next_aa="R" protein="sp|E9Q784|ZC3HD_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="40" calc_neutral_pep_mass="1225.582647" massdiff="3.006119" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="25708">
    <search_score name="xcorr" value="1.107"/>
    <search_score name="deltacn" value="0.015"/>
    <search_score name="spscore" value="23.8"/>
    <search_score name="sprank" value="14"/>
    <search_score name="expect" value="2.82E+00"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="TLWMITSMSK" peptide_prev_aa="L" peptide_next_aa="Q" protein="DECOY_sp|P28665|MUG1_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="36" calc_neutral_pep_mass="1228.583152" massdiff="0.005614" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="25708">
    <alternative_protein protein="DECOY_sp|P28665|MUG1_MOUSE"/>
    <modification_info modified_peptide="TLWM[147]ITSM[147]SK">
     <mod_aminoacid_mass position="4" mass="147.035385" variable="15.994900" source="param"/>
     <mod_aminoacid_mass position="8" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="1.091"/>
    <search_score name="deltacn" value="0.012"/>
    <search_score name="spscore" value="25.3"/>
    <search_score name="sprank" value="10"/>
    <search_score name="expect" value="3.39E+00"/>
   </search_hit>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.05384.05384.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=5384" start_scan="5384" end_scan="5384" precursor_neutral_mass="610.317783" assumed_charge="2" index="113" retention_time_sec="1233.5">
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    <alternative_protein protein="sp|Q7TNT2|FACR2_MOUSE"/>
    <alternative_protein protein="sp|Q8BTZ7|GMPPB_MOUSE"/>
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    <alternative_protein protein="sp|Q9WVD4-2|CLCN5_MOUSE"/>
    <alternative_protein protein="sp|Q9WVD4|CLCN5_MOUSE"/>
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    <alternative_protein protein="sp|Q3U4H6|HEXD_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.05400.05400.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=5400" start_scan="5400" end_scan="5400" precursor_neutral_mass="1033.507176" assumed_charge="2" index="116" retention_time_sec="1236.8">
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    <alternative_protein protein="DECOY_sp|Q80YN3|BCAS1_MOUSE"/>
    <search_score name="xcorr" value="1.173"/>
    <search_score name="deltacn" value="0.060"/>
    <search_score name="spscore" value="272.7"/>
    <search_score name="sprank" value="6"/>
    <search_score name="expect" value="3.16E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="LSGVAGK" peptide_prev_aa="L" peptide_next_aa="K" protein="DECOY_sp|Q9R1Q6|T176B_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="12" calc_neutral_pep_mass="630.370075" massdiff="3.014786" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="24026">
    <alternative_protein protein="DECOY_sp|Q9R1Q6|T176B_MOUSE"/>
    <search_score name="xcorr" value="1.103"/>
    <search_score name="deltacn" value="0.008"/>
    <search_score name="spscore" value="270.8"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="6.69E+01"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="LFNLK" peptide_prev_aa="L" peptide_next_aa="D" protein="sp|D3Z1D3|CEFIP_MOUSE" num_tot_proteins="79" num_matched_ions="6" tot_num_ions="8" calc_neutral_pep_mass="633.384997" massdiff="-0.000136" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="24026">
    <alternative_protein protein="sp|Q3UHC2-3|LRRK1_MOUSE"/>
    <alternative_protein protein="sp|Q3UHC2|LRRK1_MOUSE"/>
    <alternative_protein protein="sp|Q5S006|LRRK2_MOUSE"/>
    <alternative_protein protein="sp|Q5SYL3|BLTP2_MOUSE"/>
    <alternative_protein protein="sp|Q69ZX6|MOR2A_MOUSE"/>
    <alternative_protein protein="sp|Q6X786-2|ZPBP2_MOUSE"/>
    <alternative_protein protein="sp|Q6X786|ZPBP2_MOUSE"/>
    <alternative_protein protein="sp|Q7TSL0|IFNK_MOUSE"/>
    <alternative_protein protein="sp|Q811Q4|ADA29_MOUSE"/>
    <alternative_protein protein="sp|Q8C5W4-2|MOR2B_MOUSE"/>
    <alternative_protein protein="sp|Q8C5W4|MOR2B_MOUSE"/>
    <alternative_protein protein="sp|Q91ZC7|MRGA5_MOUSE"/>
    <alternative_protein protein="sp|Q99LU0|CH1B1_MOUSE"/>
    <alternative_protein protein="sp|Q99PH1|LRRC4_MOUSE"/>
    <alternative_protein protein="sp|Q9CPQ5-2|CENPQ_MOUSE"/>
    <alternative_protein protein="sp|Q9CPQ5|CENPQ_MOUSE"/>
    <alternative_protein protein="sp|Q9CQD4|CH1B2_MOUSE"/>
    <alternative_protein protein="sp|Q9DAM2|EFCB9_MOUSE"/>
    <alternative_protein protein="sp|Q9ESZ8-2|GTF2I_MOUSE"/>
    <alternative_protein protein="sp|Q9ESZ8-3|GTF2I_MOUSE"/>
    <search_score name="xcorr" value="1.094"/>
    <search_score name="deltacn" value="0.014"/>
    <search_score name="spscore" value="271.0"/>
    <search_score name="sprank" value="7"/>
    <search_score name="expect" value="7.35E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="TRSLR" peptide_prev_aa="C" peptide_next_aa="C" protein="sp|A2AWT3-2|AT7L3_MOUSE" num_tot_proteins="65" num_matched_ions="6" tot_num_ions="8" calc_neutral_pep_mass="631.376558" massdiff="2.008303" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="24026">
    <alternative_protein protein="sp|A2AWT3|AT7L3_MOUSE"/>
    <alternative_protein protein="sp|A3KGK3-2|FR1L4_MOUSE"/>
    <alternative_protein protein="sp|A3KGK3|FR1L4_MOUSE"/>
    <alternative_protein protein="sp|E9Q876|ABCAC_MOUSE"/>
    <alternative_protein protein="sp|O88379|BAZ1A_MOUSE"/>
    <alternative_protein protein="sp|P37237-2|FGF8_MOUSE"/>
    <alternative_protein protein="sp|P37237-3|FGF8_MOUSE"/>
    <alternative_protein protein="sp|P37237|FGF8_MOUSE"/>
    <alternative_protein protein="sp|P97813|PLD2_MOUSE"/>
    <alternative_protein protein="sp|Q3U0D9-2|HACE1_MOUSE"/>
    <alternative_protein protein="sp|Q3U0D9-3|HACE1_MOUSE"/>
    <alternative_protein protein="sp|Q3U0D9-4|HACE1_MOUSE"/>
    <alternative_protein protein="sp|Q3U0D9|HACE1_MOUSE"/>
    <alternative_protein protein="sp|Q69Z69-3|ESCO1_MOUSE"/>
    <alternative_protein protein="sp|Q69Z69|ESCO1_MOUSE"/>
    <alternative_protein protein="sp|Q8BHG1|NRDC_MOUSE"/>
    <alternative_protein protein="sp|Q8BLA1|DLEC1_MOUSE"/>
    <alternative_protein protein="sp|Q8BUH8|SENP7_MOUSE"/>
    <alternative_protein protein="sp|Q8BV79|TRNK1_MOUSE"/>
    <alternative_protein protein="sp|Q8K268|ABCF3_MOUSE"/>
    <search_score name="xcorr" value="1.078"/>
    <search_score name="deltacn" value="0.015"/>
    <search_score name="spscore" value="194.7"/>
    <search_score name="sprank" value="20"/>
    <search_score name="expect" value="8.67E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="ASVVAGK" peptide_prev_aa="F" peptide_next_aa="V" protein="DECOY_sp|Q7TN33-2|CELF6_MOUSE" num_tot_proteins="2" num_matched_ions="5" tot_num_ions="12" calc_neutral_pep_mass="630.370075" massdiff="3.014786" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="24026">
    <alternative_protein protein="DECOY_sp|Q7TN33-2|CELF6_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q7TN33|CELF6_MOUSE"/>
    <search_score name="xcorr" value="1.062"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="160.9"/>
    <search_score name="sprank" value="35"/>
    <search_score name="expect" value="1.03E+02"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.05928.05928.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=5928" start_scan="5928" end_scan="5928" precursor_neutral_mass="775.389500" assumed_charge="2" index="225" retention_time_sec="1347.2">
  <search_result>
   <search_hit hit_rank="1" peptide="CDQLIK" peptide_prev_aa="R" peptide_next_aa="A" protein="sp|P13541|MYH3_MOUSE" num_tot_proteins="8" num_matched_ions="10" tot_num_ions="10" calc_neutral_pep_mass="775.389825" massdiff="-0.000325" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="29584">
    <alternative_protein protein="sp|Q02566|MYH6_MOUSE"/>
    <alternative_protein protein="sp|Q5SX39|MYH4_MOUSE"/>
    <alternative_protein protein="sp|Q5SX40|MYH1_MOUSE"/>
    <alternative_protein protein="sp|Q8CDM8-2|FHI2A_MOUSE"/>
    <alternative_protein protein="sp|Q8CDM8|FHI2A_MOUSE"/>
    <alternative_protein protein="sp|Q91Z83|MYH7_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BKT3|GCFC2_MOUSE"/>
    <modification_info modified_peptide="CDQLIK">
     <mod_aminoacid_mass position="1" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="1.765"/>
    <search_score name="deltacn" value="0.107"/>
    <search_score name="spscore" value="572.3"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="5.75E+00"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="CDLQLK" peptide_prev_aa="E" peptide_next_aa="G" protein="DECOY_sp|Q8N9S3-2|AHSA2_MOUSE" num_tot_proteins="2" num_matched_ions="8" tot_num_ions="10" calc_neutral_pep_mass="775.389825" massdiff="-0.000325" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="29584">
    <alternative_protein protein="DECOY_sp|Q8N9S3-2|AHSA2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8N9S3|AHSA2_MOUSE"/>
    <modification_info modified_peptide="CDLQLK">
     <mod_aminoacid_mass position="1" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="1.577"/>
    <search_score name="deltacn" value="0.008"/>
    <search_score name="spscore" value="284.9"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="1.24E+01"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="DCQLLK" peptide_prev_aa="P" peptide_next_aa="E" protein="DECOY_sp|Q9Z1L5|CA2D3_MOUSE" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="10" calc_neutral_pep_mass="775.389825" massdiff="-0.000325" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="29584">
    <alternative_protein protein="DECOY_sp|Q9Z1L5|CA2D3_MOUSE"/>
    <modification_info modified_peptide="DCQLLK">
     <mod_aminoacid_mass position="2" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="1.564"/>
    <search_score name="deltacn" value="0.000"/>
    <search_score name="spscore" value="363.1"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="1.30E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="DCAGILK" peptide_prev_aa="I" peptide_next_aa="L" protein="sp|O88942-2|NFAC1_MOUSE" num_tot_proteins="11" num_matched_ions="8" tot_num_ions="12" calc_neutral_pep_mass="775.389825" massdiff="-0.000325" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="29584">
    <alternative_protein protein="sp|O88942-3|NFAC1_MOUSE"/>
    <alternative_protein protein="sp|O88942|NFAC1_MOUSE"/>
    <alternative_protein protein="sp|P97305-2|NFAC3_MOUSE"/>
    <alternative_protein protein="sp|P97305-3|NFAC3_MOUSE"/>
    <alternative_protein protein="sp|P97305|NFAC3_MOUSE"/>
    <alternative_protein protein="sp|Q60591-2|NFAC2_MOUSE"/>
    <alternative_protein protein="sp|Q60591-4|NFAC2_MOUSE"/>
    <alternative_protein protein="sp|Q60591|NFAC2_MOUSE"/>
    <alternative_protein protein="sp|Q8K120-2|NFAC4_MOUSE"/>
    <alternative_protein protein="sp|Q8K120|NFAC4_MOUSE"/>
    <modification_info modified_peptide="DCAGILK">
     <mod_aminoacid_mass position="2" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="1.564"/>
    <search_score name="deltacn" value="0.033"/>
    <search_score name="spscore" value="271.3"/>
    <search_score name="sprank" value="7"/>
    <search_score name="expect" value="1.30E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="CDQIKI" peptide_prev_aa="K" peptide_next_aa="F" protein="DECOY_sp|Q91XQ0-2|DYH8_MOUSE" num_tot_proteins="2" num_matched_ions="8" tot_num_ions="10" calc_neutral_pep_mass="775.389825" massdiff="-0.000325" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="29584">
    <alternative_protein protein="DECOY_sp|Q91XQ0-2|DYH8_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q91XQ0|DYH8_MOUSE"/>
    <modification_info modified_peptide="CDQIKI">
     <mod_aminoacid_mass position="1" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="1.512"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="310.6"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="1.61E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.05931.05931.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=5931" start_scan="5931" end_scan="5931" precursor_neutral_mass="710.504706" assumed_charge="3" index="226" retention_time_sec="1347.7">
  <search_result>
   <search_hit hit_rank="1" peptide="LKPIIK" peptide_prev_aa="S" peptide_next_aa="V" protein="sp|A2AGT5-2|CKAP5_MOUSE" num_tot_proteins="41" num_matched_ions="9" tot_num_ions="20" calc_neutral_pep_mass="710.505447" massdiff="-0.000741" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="378">
    <alternative_protein protein="sp|A2AGT5-3|CKAP5_MOUSE"/>
    <alternative_protein protein="sp|A2AGT5|CKAP5_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-2|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-7|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-8|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-9|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49|KALRN_MOUSE"/>
    <alternative_protein protein="sp|E9PVA8|GCN1_MOUSE"/>
    <alternative_protein protein="sp|P13541|MYH3_MOUSE"/>
    <alternative_protein protein="sp|P13542|MYH8_MOUSE"/>
    <alternative_protein protein="sp|Q02566|MYH6_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-2|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-3|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-4|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q3U4I7|PYRD2_MOUSE"/>
    <alternative_protein protein="sp|Q3V0E1|CI131_MOUSE"/>
    <alternative_protein protein="sp|Q5SX39|MYH4_MOUSE"/>
    <alternative_protein protein="sp|Q5SX40|MYH1_MOUSE"/>
    <alternative_protein protein="sp|Q80YS9|STKL1_MOUSE"/>
    <search_score name="xcorr" value="1.636"/>
    <search_score name="deltacn" value="0.049"/>
    <search_score name="spscore" value="312.3"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="4.06E+00"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="KLPIIK" peptide_prev_aa="K" peptide_next_aa="K" protein="sp|A2A8Z1-2|OSBL9_MOUSE" num_tot_proteins="16" num_matched_ions="8" tot_num_ions="20" calc_neutral_pep_mass="710.505447" massdiff="-0.000741" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="378">
    <alternative_protein protein="sp|A2A8Z1|OSBL9_MOUSE"/>
    <alternative_protein protein="sp|E5FYH1|TOPZ1_MOUSE"/>
    <alternative_protein protein="sp|O88466-2|ZN106_MOUSE"/>
    <alternative_protein protein="sp|O88466-3|ZN106_MOUSE"/>
    <alternative_protein protein="sp|O88466|ZN106_MOUSE"/>
    <alternative_protein protein="sp|Q60634-2|FLOT2_MOUSE"/>
    <alternative_protein protein="sp|Q60634-3|FLOT2_MOUSE"/>
    <alternative_protein protein="sp|Q60634|FLOT2_MOUSE"/>
    <alternative_protein protein="sp|Q6PAM0|AAKB2_MOUSE"/>
    <alternative_protein protein="sp|Q80X56|TRI69_MOUSE"/>
    <alternative_protein protein="sp|Q8BGZ3|DCA12_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2RSQ0|DEN5B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P59808|SASH1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q7TN84|SYT14_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9D5T0|ATAD1_MOUSE"/>
    <search_score name="xcorr" value="1.556"/>
    <search_score name="deltacn" value="0.062"/>
    <search_score name="spscore" value="253.7"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="6.26E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="LPKLLK" peptide_prev_aa="R" peptide_next_aa="E" protein="sp|Q2KHI9-2|MCM9_MOUSE" num_tot_proteins="16" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="710.505447" massdiff="-0.000741" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="378">
    <alternative_protein protein="sp|Q2KHI9|MCM9_MOUSE"/>
    <alternative_protein protein="sp|Q3UP24|NLRC4_MOUSE"/>
    <alternative_protein protein="sp|Q80X82|SYMPK_MOUSE"/>
    <alternative_protein protein="sp|Q9CUL5-3|DRC11_MOUSE"/>
    <alternative_protein protein="sp|Q9CUL5|DRC11_MOUSE"/>
    <alternative_protein protein="sp|Q9CZ30|OLA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|O88693|CEGT_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6EJB6|UT14B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CD54-2|PIEZ2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CD54|PIEZ2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8K2I3|FMO2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R1T1-2|CHMP7_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R1T1|CHMP7_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9D684-2|RIN2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9D684|RIN2_MOUSE"/>
    <search_score name="xcorr" value="1.459"/>
    <search_score name="deltacn" value="0.050"/>
    <search_score name="spscore" value="188.5"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="1.06E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="PLKLIK" peptide_prev_aa="Q" peptide_next_aa="T" protein="sp|Q5U419|MFSD3_MOUSE" num_tot_proteins="14" num_matched_ions="6" tot_num_ions="20" calc_neutral_pep_mass="710.505447" massdiff="-0.000741" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="378">
    <alternative_protein protein="sp|Q9EPR5|SORC2_MOUSE"/>
    <alternative_protein protein="sp|Q9QUK6|TLR4_MOUSE"/>
    <alternative_protein protein="sp|Q9WVL7|CXL15_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SVT3-2|ETAA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SVT3-3|ETAA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SVT3|ETAA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q69ZB8-2|ZCHC2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q69ZB8|ZCHC2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BVG5-2|GLT14_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BVG5|GLT14_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8C735-2|LIN9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8C735-3|LIN9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8C735|LIN9_MOUSE"/>
    <search_score name="xcorr" value="1.386"/>
    <search_score name="deltacn" value="0.087"/>
    <search_score name="spscore" value="154.8"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="1.58E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="IPKLKL" peptide_prev_aa="K" peptide_next_aa="P" protein="sp|Q9D6J3|YJU2_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="710.505447" massdiff="-0.000741" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="378">
    <search_score name="xcorr" value="1.266"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="140.3"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="3.04E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.05936.05936.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=5936" start_scan="5936" end_scan="5936" precursor_neutral_mass="710.504856" assumed_charge="2" index="227" retention_time_sec="1348.8">
  <search_result>
   <search_hit hit_rank="1" peptide="LKPIIK" peptide_prev_aa="S" peptide_next_aa="V" protein="sp|A2AGT5-2|CKAP5_MOUSE" num_tot_proteins="41" num_matched_ions="8" tot_num_ions="10" calc_neutral_pep_mass="710.505447" massdiff="-0.000590" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="378">
    <alternative_protein protein="sp|A2AGT5-3|CKAP5_MOUSE"/>
    <alternative_protein protein="sp|A2AGT5|CKAP5_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-2|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-7|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-8|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-9|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49|KALRN_MOUSE"/>
    <alternative_protein protein="sp|E9PVA8|GCN1_MOUSE"/>
    <alternative_protein protein="sp|P13541|MYH3_MOUSE"/>
    <alternative_protein protein="sp|P13542|MYH8_MOUSE"/>
    <alternative_protein protein="sp|Q02566|MYH6_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-2|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-3|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-4|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q3U4I7|PYRD2_MOUSE"/>
    <alternative_protein protein="sp|Q3V0E1|CI131_MOUSE"/>
    <alternative_protein protein="sp|Q5SX39|MYH4_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q8CD54|PIEZ2_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.05953.05953.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=5953" start_scan="5953" end_scan="5953" precursor_neutral_mass="1755.858175" assumed_charge="3" index="229" retention_time_sec="1352.5">
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    <alternative_protein protein="sp|P50752|TNNT2_MOUSE"/>
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    <search_score name="spscore" value="120.6"/>
    <search_score name="sprank" value="1"/>
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   <search_hit hit_rank="2" peptide="TQSGSPSHSRSPSVSPR" peptide_prev_aa="S" peptide_next_aa="S" protein="DECOY_sp|P97868-2|RBBP6_MOUSE" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="64" calc_neutral_pep_mass="1752.850323" massdiff="3.007852" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="36160">
    <alternative_protein protein="DECOY_sp|P97868-2|RBBP6_MOUSE"/>
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    <search_score name="sprank" value="12"/>
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    <alternative_protein protein="DECOY_sp|Q60987|FOXG1_MOUSE"/>
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    <search_score name="spscore" value="20.2"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="1.50E+01"/>
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   <search_hit hit_rank="4" peptide="TSKPEKVTEGFCFAR" peptide_prev_aa="A" peptide_next_aa="L" protein="DECOY_sp|Q6PEM8|PCFT_MOUSE" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1755.861405" massdiff="-0.003230" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="36160">
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    <search_score name="xcorr" value="0.707"/>
    <search_score name="deltacn" value="0.003"/>
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   <search_hit hit_rank="5" peptide="EWGPDSRRLDPNSAR" peptide_prev_aa="R" peptide_next_aa="S" protein="DECOY_sp|Q9JM52-2|MINK1_MOUSE" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1754.844844" massdiff="1.013332" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="36160">
    <alternative_protein protein="DECOY_sp|Q9JM52-2|MINK1_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.05956.05956.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=5956" start_scan="5956" end_scan="5956" precursor_neutral_mass="662.305088" assumed_charge="2" index="230" retention_time_sec="1353.0">
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    <alternative_protein protein="DECOY_sp|Q3USJ8|FCSD2_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q70FJ1-2|AKAP9_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06036.06036.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6036" start_scan="6036" end_scan="6036" precursor_neutral_mass="889.474949" assumed_charge="2" index="247" retention_time_sec="1369.5">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06047.06047.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6047" start_scan="6047" end_scan="6047" precursor_neutral_mass="599.399937" assumed_charge="2" index="248" retention_time_sec="1372.0">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06051.06051.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6051" start_scan="6051" end_scan="6051" precursor_neutral_mass="715.422154" assumed_charge="2" index="249" retention_time_sec="1372.8">
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   <search_hit hit_rank="4" peptide="NLGTIAK" peptide_prev_aa="N" peptide_next_aa="S" protein="sp|P07901|HS90A_MOUSE" num_tot_proteins="3" num_matched_ions="8" tot_num_ions="12" calc_neutral_pep_mass="715.422839" massdiff="-0.000686" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="24332">
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    <search_score name="expect" value="8.75E+00"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="GSQLALK" peptide_prev_aa="A" peptide_next_aa="T" protein="DECOY_sp|P70352-2|NAR5_MOUSE" num_tot_proteins="3" num_matched_ions="8" tot_num_ions="12" calc_neutral_pep_mass="715.422839" massdiff="-0.000686" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="24332">
    <alternative_protein protein="DECOY_sp|P70352-2|NAR5_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|P70352|NAR5_MOUSE"/>
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  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06054.06054.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6054" start_scan="6054" end_scan="6054" precursor_neutral_mass="628.390293" assumed_charge="2" index="250" retention_time_sec="1373.3">
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   </search_hit>
   <search_hit hit_rank="2" peptide="GGVGVIK" peptide_prev_aa="G" peptide_next_aa="M" protein="sp|Q8VCK5|KLH20_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="12" calc_neutral_pep_mass="628.390811" massdiff="-0.000518" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16136">
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    <search_score name="spscore" value="277.5"/>
    <search_score name="sprank" value="3"/>
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   <search_hit hit_rank="3" peptide="NVGVLK" peptide_prev_aa="D" peptide_next_aa="D" protein="DECOY_sp|O88685|PRS6A_MOUSE" num_tot_proteins="8" num_matched_ions="6" tot_num_ions="10" calc_neutral_pep_mass="628.390811" massdiff="-0.000518" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16136">
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    <alternative_protein protein="DECOY_sp|P62631|EF1A2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q03311|CHLE_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q3V3A1-3|CDK15_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q3V3A1|CDK15_MOUSE"/>
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    <search_score name="expect" value="5.29E+00"/>
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   <search_hit hit_rank="4" peptide="NVVAVK" peptide_prev_aa="S" peptide_next_aa="V" protein="DECOY_sp|O35604|NPC1_MOUSE" num_tot_proteins="2" num_matched_ions="7" tot_num_ions="10" calc_neutral_pep_mass="628.390811" massdiff="-0.000518" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16136">
    <alternative_protein protein="DECOY_sp|O35604|NPC1_MOUSE"/>
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    <search_score name="spscore" value="358.7"/>
    <search_score name="sprank" value="2"/>
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   <search_hit hit_rank="5" peptide="VVGGGLK" peptide_prev_aa="I" peptide_next_aa="H" protein="DECOY_sp|Q3TXU5|DHYS_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="12" calc_neutral_pep_mass="628.390811" massdiff="-0.000518" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16136">
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    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="1.44E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06067.06067.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6067" start_scan="6067" end_scan="6067" precursor_neutral_mass="677.341160" assumed_charge="2" index="251" retention_time_sec="1376.2">
  <search_result>
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    <search_score name="xcorr" value="1.425"/>
    <search_score name="deltacn" value="0.193"/>
    <search_score name="spscore" value="257.4"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="3.89E-01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="QTETAK" peptide_prev_aa="L" peptide_next_aa="N" protein="DECOY_sp|Q1ERP8-2|CLM9_MOUSE" num_tot_proteins="4" num_matched_ions="5" tot_num_ions="10" calc_neutral_pep_mass="676.339169" massdiff="1.001991" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="34074">
    <alternative_protein protein="DECOY_sp|Q1ERP8-2|CLM9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q1ERP8-3|CLM9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q1ERP8-5|CLM9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q1ERP8|CLM9_MOUSE"/>
    <search_score name="xcorr" value="1.150"/>
    <search_score name="deltacn" value="0.034"/>
    <search_score name="spscore" value="147.5"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="4.91E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="SAAETAK" peptide_prev_aa="A" peptide_next_aa="A" protein="DECOY_sp|Q8BKJ9|SIR7_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="12" calc_neutral_pep_mass="676.339169" massdiff="1.001991" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="34074">
    <alternative_protein protein="DECOY_sp|Q8BKJ9|SIR7_MOUSE"/>
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    <search_score name="deltacn" value="0.017"/>
    <search_score name="spscore" value="122.9"/>
    <search_score name="sprank" value="7"/>
    <search_score name="expect" value="7.03E+00"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="AETGTAK" peptide_prev_aa="A" peptide_next_aa="D" protein="DECOY_sp|P52624|UPP1_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="12" calc_neutral_pep_mass="676.339169" massdiff="1.001991" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="34074">
    <alternative_protein protein="DECOY_sp|P52624|UPP1_MOUSE"/>
    <search_score name="xcorr" value="1.093"/>
    <search_score name="deltacn" value="0.006"/>
    <search_score name="spscore" value="83.8"/>
    <search_score name="sprank" value="24"/>
    <search_score name="expect" value="8.32E+00"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="MEVTAK" peptide_prev_aa="P" peptide_next_aa="G" protein="DECOY_sp|Q8R502|LRC8C_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="10" calc_neutral_pep_mass="677.341812" massdiff="-0.000652" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="34074">
    <alternative_protein protein="DECOY_sp|Q8R502|LRC8C_MOUSE"/>
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    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="117.0"/>
    <search_score name="sprank" value="9"/>
    <search_score name="expect" value="8.84E+00"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06068.06068.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6068" start_scan="6068" end_scan="6068" precursor_neutral_mass="864.410252" assumed_charge="2" index="252" retention_time_sec="1376.4">
  <search_result>
   <search_hit hit_rank="1" peptide="LTDADAMK" peptide_prev_aa="R" peptide_next_aa="Y" protein="sp|Q03265|ATPA_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="14" calc_neutral_pep_mass="863.405869" massdiff="1.004383" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="28768">
    <search_score name="xcorr" value="1.698"/>
    <search_score name="deltacn" value="0.307"/>
    <search_score name="spscore" value="306.0"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="8.98E-03"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="LEASDAMK" peptide_prev_aa="-" peptide_next_aa="Q" protein="DECOY_sp|O88907|PIAS1_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="14" calc_neutral_pep_mass="863.405869" massdiff="1.004383" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="28768">
    <alternative_protein protein="DECOY_sp|O88907|PIAS1_MOUSE"/>
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    <search_score name="deltacn" value="0.079"/>
    <search_score name="spscore" value="150.3"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="1.48E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="LTPEMMK" peptide_prev_aa="L" peptide_next_aa="A" protein="sp|Q6PHS6|SNX13_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="12" calc_neutral_pep_mass="864.408497" massdiff="0.001755" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="28768">
    <modification_info modified_peptide="LTPEM[147]MK">
     <mod_aminoacid_mass position="5" mass="147.035385" variable="15.994900" source="param"/>
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    <search_score name="xcorr" value="1.084"/>
    <search_score name="deltacn" value="0.013"/>
    <search_score name="spscore" value="175.9"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="3.68E+00"/>
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   <search_hit hit_rank="4" peptide="LTDLDCK" peptide_prev_aa="H" peptide_next_aa="E" protein="DECOY_sp|P97313|PRKDC_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="12" calc_neutral_pep_mass="863.405869" massdiff="1.004383" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="28768">
    <alternative_protein protein="DECOY_sp|P97313|PRKDC_MOUSE"/>
    <modification_info modified_peptide="LTDLDCK">
     <mod_aminoacid_mass position="6" mass="160.030649" static="57.021464"/>
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    <search_score name="xcorr" value="1.070"/>
    <search_score name="deltacn" value="0.031"/>
    <search_score name="spscore" value="140.1"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="4.24E+00"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="LTDDCLK" peptide_prev_aa="H" peptide_next_aa="N" protein="sp|Q8BPY9|FIGL1_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="12" calc_neutral_pep_mass="863.405869" massdiff="1.004383" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="28768">
    <modification_info modified_peptide="LTDDCLK">
     <mod_aminoacid_mass position="5" mass="160.030649" static="57.021464"/>
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    <search_score name="xcorr" value="1.037"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="125.8"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="5.85E+00"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06075.06075.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6075" start_scan="6075" end_scan="6075" precursor_neutral_mass="710.504614" assumed_charge="3" index="253" retention_time_sec="1377.9">
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    <alternative_protein protein="sp|A2AGT5-3|CKAP5_MOUSE"/>
    <alternative_protein protein="sp|A2AGT5|CKAP5_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-2|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-7|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-8|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49-9|KALRN_MOUSE"/>
    <alternative_protein protein="sp|A2CG49|KALRN_MOUSE"/>
    <alternative_protein protein="sp|E9PVA8|GCN1_MOUSE"/>
    <alternative_protein protein="sp|P13541|MYH3_MOUSE"/>
    <alternative_protein protein="sp|P13542|MYH8_MOUSE"/>
    <alternative_protein protein="sp|Q02566|MYH6_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-2|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-3|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02-4|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q0KL02|TRIO_MOUSE"/>
    <alternative_protein protein="sp|Q3U4I7|PYRD2_MOUSE"/>
    <alternative_protein protein="sp|Q3V0E1|CI131_MOUSE"/>
    <alternative_protein protein="sp|Q5SX39|MYH4_MOUSE"/>
    <alternative_protein protein="sp|Q5SX40|MYH1_MOUSE"/>
    <alternative_protein protein="sp|Q80YS9|STKL1_MOUSE"/>
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    <search_score name="spscore" value="330.1"/>
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    <search_score name="expect" value="6.20E+00"/>
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    <alternative_protein protein="sp|A2A8Z1|OSBL9_MOUSE"/>
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    <alternative_protein protein="sp|O88466-2|ZN106_MOUSE"/>
    <alternative_protein protein="sp|O88466-3|ZN106_MOUSE"/>
    <alternative_protein protein="sp|O88466|ZN106_MOUSE"/>
    <alternative_protein protein="sp|Q60634-2|FLOT2_MOUSE"/>
    <alternative_protein protein="sp|Q60634-3|FLOT2_MOUSE"/>
    <alternative_protein protein="sp|Q60634|FLOT2_MOUSE"/>
    <alternative_protein protein="sp|Q6PAM0|AAKB2_MOUSE"/>
    <alternative_protein protein="sp|Q80X56|TRI69_MOUSE"/>
    <alternative_protein protein="sp|Q8BGZ3|DCA12_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2RSQ0|DEN5B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P59808|SASH1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q7TN84|SYT14_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9D5T0|ATAD1_MOUSE"/>
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    <search_score name="spscore" value="267.4"/>
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    <search_score name="expect" value="9.98E+00"/>
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   <search_hit hit_rank="3" peptide="LPKLLK" peptide_prev_aa="R" peptide_next_aa="E" protein="sp|Q2KHI9-2|MCM9_MOUSE" num_tot_proteins="16" num_matched_ions="7" tot_num_ions="20" calc_neutral_pep_mass="710.505447" massdiff="-0.000833" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="378">
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    <alternative_protein protein="sp|Q9CUL5|DRC11_MOUSE"/>
    <alternative_protein protein="sp|Q9CZ30|OLA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|O88693|CEGT_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6EJB6|UT14B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CD54-2|PIEZ2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CD54|PIEZ2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8K2I3|FMO2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R1T1-2|CHMP7_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R1T1|CHMP7_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q9D684|RIN2_MOUSE"/>
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    <search_score name="expect" value="1.78E+01"/>
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   <search_hit hit_rank="4" peptide="PLKLIK" peptide_prev_aa="Q" peptide_next_aa="T" protein="sp|Q5U419|MFSD3_MOUSE" num_tot_proteins="14" num_matched_ions="6" tot_num_ions="20" calc_neutral_pep_mass="710.505447" massdiff="-0.000833" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="378">
    <alternative_protein protein="sp|Q9EPR5|SORC2_MOUSE"/>
    <alternative_protein protein="sp|Q9QUK6|TLR4_MOUSE"/>
    <alternative_protein protein="sp|Q9WVL7|CXL15_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SVT3-2|ETAA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SVT3-3|ETAA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SVT3|ETAA1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q69ZB8-2|ZCHC2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q69ZB8|ZCHC2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BVG5-2|GLT14_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06259.06259.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6259" start_scan="6259" end_scan="6259" precursor_neutral_mass="1384.664480" assumed_charge="3" index="290" retention_time_sec="1416.1">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06465.06465.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6465" start_scan="6465" end_scan="6465" precursor_neutral_mass="1143.611990" assumed_charge="3" index="339" retention_time_sec="1458.3">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06468.06468.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6468" start_scan="6468" end_scan="6468" precursor_neutral_mass="1224.618626" assumed_charge="2" index="340" retention_time_sec="1458.9">
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   <search_hit hit_rank="4" peptide="TQLLMTEVMK" peptide_prev_aa="L" peptide_next_aa="L" protein="sp|A2AIV8|CARD9_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="18" calc_neutral_pep_mass="1224.609367" massdiff="0.009259" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="33518">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06469.06469.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6469" start_scan="6469" end_scan="6469" precursor_neutral_mass="618.351841" assumed_charge="2" index="341" retention_time_sec="1459.1">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06480.06480.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6480" start_scan="6480" end_scan="6480" precursor_neutral_mass="649.328648" assumed_charge="2" index="342" retention_time_sec="1461.5">
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    <alternative_protein protein="DECOY_sp|Q5F2E8|TAOK1_MOUSE"/>
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    <alternative_protein protein="sp|P32507|NECT2_MOUSE"/>
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   <search_hit hit_rank="3" peptide="ASSMASTNAAA" peptide_prev_aa="K" peptide_next_aa="-" protein="DECOY_sp|Q5XPI3-2|RN123_MOUSE" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="20" calc_neutral_pep_mass="996.418210" massdiff="0.995704" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="9308">
    <alternative_protein protein="DECOY_sp|Q5XPI3-2|RN123_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5XPI3|RN123_MOUSE"/>
    <modification_info modified_peptide="ASSM[147]ASTNAAA">
     <mod_aminoacid_mass position="4" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="0.758"/>
    <search_score name="deltacn" value="0.084"/>
    <search_score name="spscore" value="19.2"/>
    <search_score name="sprank" value="47"/>
    <search_score name="expect" value="5.76E+00"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="MNSEMEQK" peptide_prev_aa="G" peptide_next_aa="Q" protein="DECOY_sp|Q6RHW0|K1C9_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="14" calc_neutral_pep_mass="995.405217" massdiff="2.008697" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="9308">
    <alternative_protein protein="DECOY_sp|Q6RHW0|K1C9_MOUSE"/>
    <search_score name="xcorr" value="0.694"/>
    <search_score name="deltacn" value="0.026"/>
    <search_score name="spscore" value="48.3"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="1.19E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="MVTDGTLED" peptide_prev_aa="K" peptide_next_aa="D" protein="DECOY_sp|D3Z4R1|HFM1_MOUSE" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="995.411727" massdiff="2.002187" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="9308">
    <alternative_protein protein="DECOY_sp|D3Z4R1|HFM1_MOUSE"/>
    <modification_info modified_peptide="M[147]VTDGTLED">
     <mod_aminoacid_mass position="1" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="0.676"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="31.4"/>
    <search_score name="sprank" value="25"/>
    <search_score name="expect" value="1.47E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06928.06928.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6928" start_scan="6928" end_scan="6928" precursor_neutral_mass="692.347935" assumed_charge="2" index="473" retention_time_sec="1550.7">
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   <search_hit hit_rank="1" peptide="EFLER" peptide_prev_aa="K" peptide_next_aa="E" protein="sp|A2RT91|ANKAR_MOUSE" num_tot_proteins="60" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="692.349340" massdiff="-0.001405" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="31958">
    <alternative_protein protein="sp|P49891|ST1E1_MOUSE"/>
    <alternative_protein protein="sp|P50540|MXI1_MOUSE"/>
    <alternative_protein protein="sp|P53569-2|CEBPZ_MOUSE"/>
    <alternative_protein protein="sp|P53569|CEBPZ_MOUSE"/>
    <alternative_protein protein="sp|P54731|FAF1_MOUSE"/>
    <alternative_protein protein="sp|P57725|SAMN1_MOUSE"/>
    <alternative_protein protein="sp|P61406|EST1A_MOUSE"/>
    <alternative_protein protein="sp|P70402|MYBPH_MOUSE"/>
    <alternative_protein protein="sp|P97305-2|NFAC3_MOUSE"/>
    <alternative_protein protein="sp|P97305-3|NFAC3_MOUSE"/>
    <alternative_protein protein="sp|P97305|NFAC3_MOUSE"/>
    <alternative_protein protein="sp|Q68FG3|SPT2_MOUSE"/>
    <alternative_protein protein="sp|Q6VGS5-2|DAPLE_MOUSE"/>
    <alternative_protein protein="sp|Q6VGS5|DAPLE_MOUSE"/>
    <alternative_protein protein="sp|Q80US8|MAD3_MOUSE"/>
    <alternative_protein protein="sp|Q8BG15-2|CTSL2_MOUSE"/>
    <alternative_protein protein="sp|Q8BG15-6|CTSL2_MOUSE"/>
    <alternative_protein protein="sp|Q8BG15|CTSL2_MOUSE"/>
    <alternative_protein protein="sp|Q8BGG0|ZNT8_MOUSE"/>
    <alternative_protein protein="sp|Q8BHM9|TM11F_MOUSE"/>
    <search_score name="xcorr" value="0.950"/>
    <search_score name="deltacn" value="0.126"/>
    <search_score name="spscore" value="234.5"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="4.10E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="TSSLER" peptide_prev_aa="G" peptide_next_aa="Q" protein="sp|O88509-2|DNM3B_MOUSE" num_tot_proteins="17" num_matched_ions="4" tot_num_ions="10" calc_neutral_pep_mass="691.350068" massdiff="0.997867" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="31958">
    <alternative_protein protein="sp|O88509-3|DNM3B_MOUSE"/>
    <alternative_protein protein="sp|O88509-4|DNM3B_MOUSE"/>
    <alternative_protein protein="sp|O88509|DNM3B_MOUSE"/>
    <alternative_protein protein="sp|Q62415|ASPP1_MOUSE"/>
    <alternative_protein protein="sp|Q91YM2|RHG35_MOUSE"/>
    <alternative_protein protein="sp|Q9D6Z6|IL36B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P02741|CRP_HUMAN"/>
    <alternative_protein protein="DECOY_sp|Q3URD3-2|SLMAP_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q3URD3-3|SLMAP_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q3URD3-4|SLMAP_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q3URD3-5|SLMAP_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q3URD3|SLMAP_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BNL5|KCTD6_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q924W6-2|TRI66_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q924W6-3|TRI66_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q924W6|TRI66_MOUSE"/>
    <search_score name="xcorr" value="0.831"/>
    <search_score name="deltacn" value="0.003"/>
    <search_score name="spscore" value="139.3"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="1.14E+02"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="TGDIER" peptide_prev_aa="E" peptide_next_aa="L" protein="sp|Q62233-2|SIX3_MOUSE" num_tot_proteins="6" num_matched_ions="4" tot_num_ions="10" calc_neutral_pep_mass="689.334418" massdiff="3.013517" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="31958">
    <alternative_protein protein="sp|Q62233|SIX3_MOUSE"/>
    <alternative_protein protein="sp|Q7TN08|DACT2_MOUSE"/>
    <alternative_protein protein="sp|Q9D478-2|ODF2L_MOUSE"/>
    <alternative_protein protein="sp|Q9D478-3|ODF2L_MOUSE"/>
    <alternative_protein protein="sp|Q9D478|ODF2L_MOUSE"/>
    <search_score name="xcorr" value="0.828"/>
    <search_score name="deltacn" value="0.051"/>
    <search_score name="spscore" value="139.3"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="1.17E+02"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="FEIER" peptide_prev_aa="Q" peptide_next_aa="D" protein="sp|O88271|CFDP1_MOUSE" num_tot_proteins="32" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="692.349340" massdiff="-0.001405" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="31958">
    <alternative_protein protein="sp|O88816|SNAT_MOUSE"/>
    <alternative_protein protein="sp|P97334|NKX23_MOUSE"/>
    <alternative_protein protein="sp|P97503|NKX32_MOUSE"/>
    <alternative_protein protein="sp|P98063|BMP1_MOUSE"/>
    <alternative_protein protein="sp|Q62381|TLL1_MOUSE"/>
    <alternative_protein protein="sp|Q8BK84|DUS29_MOUSE"/>
    <alternative_protein protein="sp|Q8CAM5|RAB36_MOUSE"/>
    <alternative_protein protein="sp|Q8N7N6|CIKS_MOUSE"/>
    <alternative_protein protein="sp|Q91V88-2|NPNT_MOUSE"/>
    <alternative_protein protein="sp|Q91V88-3|NPNT_MOUSE"/>
    <alternative_protein protein="sp|Q91V88-4|NPNT_MOUSE"/>
    <alternative_protein protein="sp|Q91V88|NPNT_MOUSE"/>
    <alternative_protein protein="sp|Q923L3-2|CSMD1_MOUSE"/>
    <alternative_protein protein="sp|Q923L3|CSMD1_MOUSE"/>
    <alternative_protein protein="sp|Q99LI9|CLP1_MOUSE"/>
    <alternative_protein protein="sp|Q9D700|DUS26_MOUSE"/>
    <alternative_protein protein="sp|Q9WVM6|TLL2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q0P5W1-2|VPS8_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q0P5W1-3|VPS8_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q0P5W1|VPS8_MOUSE"/>
    <search_score name="xcorr" value="0.785"/>
    <search_score name="deltacn" value="0.013"/>
    <search_score name="spscore" value="224.9"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="1.68E+02"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="DLGFGGK" peptide_prev_aa="T" peptide_next_aa="N" protein="DECOY_sp|O08796|EF2K_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="12" calc_neutral_pep_mass="692.349340" massdiff="-0.001405" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="31958">
    <alternative_protein protein="DECOY_sp|O08796|EF2K_MOUSE"/>
    <search_score name="xcorr" value="0.775"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="78.4"/>
    <search_score name="sprank" value="29"/>
    <search_score name="expect" value="1.83E+02"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06930.06930.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6930" start_scan="6930" end_scan="6930" precursor_neutral_mass="620.327122" assumed_charge="2" index="474" retention_time_sec="1551.0">
  <search_result>
   <search_hit hit_rank="1" peptide="LDAFR" peptide_prev_aa="P" peptide_next_aa="M" protein="sp|E9Q3T6|PRD14_MOUSE" num_tot_proteins="30" num_matched_ions="6" tot_num_ions="8" calc_neutral_pep_mass="620.328211" massdiff="-0.001089" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42042">
    <alternative_protein protein="sp|O35593|PSDE_MOUSE"/>
    <alternative_protein protein="sp|O70373|XIRP1_MOUSE"/>
    <alternative_protein protein="sp|P09411|PGK1_MOUSE"/>
    <alternative_protein protein="sp|Q3UHD2|GFOD1_MOUSE"/>
    <alternative_protein protein="sp|Q61216-2|MRE11_MOUSE"/>
    <alternative_protein protein="sp|Q61216|MRE11_MOUSE"/>
    <alternative_protein protein="sp|Q6GQU2|KLH23_MOUSE"/>
    <alternative_protein protein="sp|Q8CIG9|FBXL8_MOUSE"/>
    <alternative_protein protein="sp|Q8R1C9|APBB3_MOUSE"/>
    <alternative_protein protein="sp|Q91WW7|PLPL3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881-2|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881-3|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881-4|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881-5|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881-6|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881-7|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881-8|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P11881|ITPR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P70227|ITPR3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q2WF71-2|LRFN1_MOUSE"/>
    <search_score name="xcorr" value="1.404"/>
    <search_score name="deltacn" value="0.133"/>
    <search_score name="spscore" value="300.8"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="7.34E+00"/>
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   <search_hit hit_rank="2" peptide="LDFAR" peptide_prev_aa="D" peptide_next_aa="Q" protein="sp|O35382|EXOC4_MOUSE" num_tot_proteins="22" num_matched_ions="6" tot_num_ions="8" calc_neutral_pep_mass="620.328211" massdiff="-0.001089" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42042">
    <alternative_protein protein="sp|P17751-2|TPIS_MOUSE"/>
    <alternative_protein protein="sp|P17751|TPIS_MOUSE"/>
    <alternative_protein protein="sp|P48962|ADT1_MOUSE"/>
    <alternative_protein protein="sp|P51881|ADT2_MOUSE"/>
    <alternative_protein protein="sp|Q02853|MMP11_MOUSE"/>
    <alternative_protein protein="sp|Q148V7-2|RELCH_MOUSE"/>
    <alternative_protein protein="sp|Q148V7-3|RELCH_MOUSE"/>
    <alternative_protein protein="sp|Q148V7|RELCH_MOUSE"/>
    <alternative_protein protein="sp|Q3V132|ADT4_MOUSE"/>
    <alternative_protein protein="sp|Q5DU05-2|CE164_MOUSE"/>
    <alternative_protein protein="sp|Q5DU05-3|CE164_MOUSE"/>
    <alternative_protein protein="sp|Q5DU05|CE164_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P10518|HEM2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q3UIK4-2|MET14_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q3UIK4|MET14_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SS80|DHR13_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SW19-2|CLU_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SW19-3|CLU_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5SW19|CLU_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CG16|C1RA_MOUSE"/>
    <search_score name="xcorr" value="1.217"/>
    <search_score name="deltacn" value="0.049"/>
    <search_score name="spscore" value="289.7"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="2.60E+01"/>
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   <search_hit hit_rank="3" peptide="VEAFR" peptide_prev_aa="Q" peptide_next_aa="V" protein="sp|A2AUM9|CE152_MOUSE" num_tot_proteins="11" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="620.328211" massdiff="-0.001089" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42042">
    <alternative_protein protein="sp|O35385|PPE2_MOUSE"/>
    <alternative_protein protein="sp|P70303-2|PYRG2_MOUSE"/>
    <alternative_protein protein="sp|P70303-3|PYRG2_MOUSE"/>
    <alternative_protein protein="sp|P70303|PYRG2_MOUSE"/>
    <alternative_protein protein="sp|Q14BI7-2|TDRD9_MOUSE"/>
    <alternative_protein protein="sp|Q14BI7|TDRD9_MOUSE"/>
    <alternative_protein protein="sp|Q60928|GGT1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2AR02|PPIG_MOUSE"/>
    <alternative_protein protein="DECOY_sp|O88495|MTR1L_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9Z1J1|TF7L1_MOUSE"/>
    <search_score name="xcorr" value="1.158"/>
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    <search_score name="spscore" value="163.5"/>
    <search_score name="sprank" value="3"/>
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   <search_hit hit_rank="4" peptide="EVAFR" peptide_prev_aa="M" peptide_next_aa="G" protein="sp|O70157|TOP3A_MOUSE" num_tot_proteins="10" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="620.328211" massdiff="-0.001089" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42042">
    <alternative_protein protein="sp|P23813|HXD11_MOUSE"/>
    <alternative_protein protein="sp|P35492|HUTH_MOUSE"/>
    <alternative_protein protein="sp|P97351|RS3A_MOUSE"/>
    <alternative_protein protein="sp|Q3KNY0-2|IGFN1_MOUSE"/>
    <alternative_protein protein="sp|Q3KNY0|IGFN1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q62120|JAK2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q66JV7-2|CH058_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q66JV7|CH058_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BRX9|MARH3_MOUSE"/>
    <search_score name="xcorr" value="1.143"/>
    <search_score name="deltacn" value="0.000"/>
    <search_score name="spscore" value="163.5"/>
    <search_score name="sprank" value="3"/>
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   <search_hit hit_rank="5" peptide="DLAFR" peptide_prev_aa="P" peptide_next_aa="L" protein="sp|Q8C7B8|ZSWM4_MOUSE" num_tot_proteins="11" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="620.328211" massdiff="-0.001089" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42042">
    <alternative_protein protein="sp|Q8R526|PK1L1_MOUSE"/>
    <alternative_protein protein="sp|Q91ZA6|SOCS4_MOUSE"/>
    <alternative_protein protein="sp|Q9CXI0|COQ5_MOUSE"/>
    <alternative_protein protein="sp|Q9D8T0|FAM3A_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q14BI2|GRM2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q68EF4-2|GRM4_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q68EF4|GRM4_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8K010|OPLA_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9ER65-2|CSTN2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9ER65|CSTN2_MOUSE"/>
    <search_score name="xcorr" value="1.143"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="163.5"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="4.30E+01"/>
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  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.06933.06933.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6933" start_scan="6933" end_scan="6933" precursor_neutral_mass="1786.915793" assumed_charge="3" index="475" retention_time_sec="1551.6">
  <search_result>
   <search_hit hit_rank="1" peptide="GQHAAEIQPLAQSHATK" peptide_prev_aa="K" peptide_next_aa="H" protein="sp|P04247|MYG_MOUSE" num_tot_proteins="1" num_matched_ions="14" tot_num_ions="64" calc_neutral_pep_mass="1785.912195" massdiff="1.003598" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="37950">
    <search_score name="xcorr" value="2.633"/>
    <search_score name="deltacn" value="0.544"/>
    <search_score name="spscore" value="241.1"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="6.53E-07"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="ISTSGEFIGEYEAKKK" peptide_prev_aa="E" peptide_next_aa="K" protein="sp|Q920F6|SMC1B_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="60" calc_neutral_pep_mass="1785.914880" massdiff="1.000912" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="37950">
    <search_score name="xcorr" value="1.200"/>
    <search_score name="deltacn" value="0.044"/>
    <search_score name="spscore" value="35.4"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="1.69E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="RSPEHVERGPWHATK" peptide_prev_aa="S" peptide_next_aa="G" protein="DECOY_sp|P56475|GBRR1_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="56" calc_neutral_pep_mass="1785.902299" massdiff="1.013494" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="37950">
    <alternative_protein protein="DECOY_sp|P56475|GBRR1_MOUSE"/>
    <search_score name="xcorr" value="1.147"/>
    <search_score name="deltacn" value="0.060"/>
    <search_score name="spscore" value="35.2"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="2.91E+00"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="MIYSAAKAVAGMYKQR" peptide_prev_aa="Q" peptide_next_aa="L" protein="sp|Q3UPH1|PRRC1_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="60" calc_neutral_pep_mass="1786.922231" massdiff="-0.006439" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="37950">
    <search_score name="xcorr" value="1.078"/>
    <search_score name="deltacn" value="0.018"/>
    <search_score name="spscore" value="20.9"/>
    <search_score name="sprank" value="14"/>
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   <search_hit hit_rank="5" peptide="IMDPEIIK" peptide_prev_aa="A" peptide_next_aa="I" protein="sp|O09158|CP3AP_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="14" calc_neutral_pep_mass="973.515405" massdiff="0.006358" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="35154">
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    <search_score name="sprank" value="5"/>
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   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07124.07124.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7124" start_scan="7124" end_scan="7124" precursor_neutral_mass="644.348362" assumed_charge="2" index="522" retention_time_sec="1590.4">
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    <alternative_protein protein="sp|P31001|DESM_MOUSE"/>
    <alternative_protein protein="sp|P48615|WNT11_MOUSE"/>
    <alternative_protein protein="sp|P48725-3|PCNT_MOUSE"/>
    <alternative_protein protein="sp|P48725|PCNT_MOUSE"/>
    <alternative_protein protein="sp|P52189|KCNJ4_MOUSE"/>
    <alternative_protein protein="sp|P55264-2|ADK_MOUSE"/>
    <alternative_protein protein="sp|P55264|ADK_MOUSE"/>
    <alternative_protein protein="sp|P97368-2|MEIS3_MOUSE"/>
    <alternative_protein protein="sp|P97368|MEIS3_MOUSE"/>
    <alternative_protein protein="sp|Q149C3|LIGO4_MOUSE"/>
    <alternative_protein protein="sp|Q32NZ6-2|TMC5_MOUSE"/>
    <alternative_protein protein="sp|Q32NZ6|TMC5_MOUSE"/>
    <alternative_protein protein="sp|Q3TVI4|HEXI2_MOUSE"/>
    <alternative_protein protein="sp|Q3U0L2-2|AN33B_MOUSE"/>
    <alternative_protein protein="sp|Q3U0L2|AN33B_MOUSE"/>
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    <search_score name="spscore" value="275.0"/>
    <search_score name="sprank" value="1"/>
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   <search_hit hit_rank="2" peptide="IDELR" peptide_prev_aa="D" peptide_next_aa="T" protein="sp|A0A1W2P884|CE85L_MOUSE" num_tot_proteins="231" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="644.349340" massdiff="-0.000978" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="26522">
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    <alternative_protein protein="sp|O70551|SRPK1_MOUSE"/>
    <alternative_protein protein="sp|O88327|CTNL1_MOUSE"/>
    <alternative_protein protein="sp|O88816|SNAT_MOUSE"/>
    <alternative_protein protein="sp|P02768|ALBU_HUMAN"/>
    <alternative_protein protein="sp|P25799-5|NFKB1_MOUSE"/>
    <alternative_protein protein="sp|P25799|NFKB1_MOUSE"/>
    <alternative_protein protein="sp|P28738|KIF5C_MOUSE"/>
    <alternative_protein protein="sp|P68368|TBA4A_MOUSE"/>
    <alternative_protein protein="sp|P70279|SURF6_MOUSE"/>
    <alternative_protein protein="sp|P70388-2|RAD50_MOUSE"/>
    <alternative_protein protein="sp|P70388-4|RAD50_MOUSE"/>
    <alternative_protein protein="sp|P70388|RAD50_MOUSE"/>
    <alternative_protein protein="sp|P86044|ANO9_MOUSE"/>
    <alternative_protein protein="sp|Q2KHK6|GSDC2_MOUSE"/>
    <alternative_protein protein="sp|Q3TR54|GSDC4_MOUSE"/>
    <alternative_protein protein="sp|Q3TVW5-2|TCHP_MOUSE"/>
    <alternative_protein protein="sp|Q3TVW5|TCHP_MOUSE"/>
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   <search_hit hit_rank="3" peptide="EVIER" peptide_prev_aa="Y" peptide_next_aa="V" protein="sp|A2ARV4|LRP2_MOUSE" num_tot_proteins="112" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="644.349340" massdiff="-0.000978" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="26522">
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    <alternative_protein protein="sp|P57680|EVC_MOUSE"/>
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    <alternative_protein protein="sp|Q3U8K7-5|KMT5B_MOUSE"/>
    <alternative_protein protein="sp|Q3U8K7|KMT5B_MOUSE"/>
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    <alternative_protein protein="sp|Q501J7|PHAR4_MOUSE"/>
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    <alternative_protein protein="sp|Q5DTM8|BRE1A_MOUSE"/>
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    <alternative_protein protein="sp|Q62504|MINT_MOUSE"/>
    <alternative_protein protein="sp|Q64249-2|NR6A1_MOUSE"/>
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   <search_hit hit_rank="4" peptide="VEIER" peptide_prev_aa="G" peptide_next_aa="R" protein="sp|A2ASS6-2|TITIN_MOUSE" num_tot_proteins="72" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="644.349340" massdiff="-0.000978" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="26522">
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    <alternative_protein protein="sp|O08791|COE3_MOUSE"/>
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    <alternative_protein protein="sp|P23819|GRIA2_MOUSE"/>
    <alternative_protein protein="sp|P27671|RGRF1_MOUSE"/>
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    <alternative_protein protein="sp|Q05920|PYC_MOUSE"/>
    <alternative_protein protein="sp|Q07802-2|COE1_MOUSE"/>
    <alternative_protein protein="sp|Q07802|COE1_MOUSE"/>
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    <alternative_protein protein="sp|Q3UMT1|PP12C_MOUSE"/>
    <alternative_protein protein="sp|Q61081|CDC37_MOUSE"/>
    <alternative_protein protein="sp|Q69Z89-2|RADIL_MOUSE"/>
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    <alternative_protein protein="sp|O88939|ZBT7A_MOUSE"/>
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    <alternative_protein protein="sp|P54822|PUR8_MOUSE"/>
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    <alternative_protein protein="sp|Q3TIV5-2|ZC3HF_MOUSE"/>
    <alternative_protein protein="sp|Q3TIV5|ZC3HF_MOUSE"/>
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    <alternative_protein protein="sp|Q3UGR5|HDHD2_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07127.07127.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7127" start_scan="7127" end_scan="7127" precursor_neutral_mass="1355.686117" assumed_charge="3" index="523" retention_time_sec="1591.0">
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    <search_score name="sprank" value="8"/>
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   <search_hit hit_rank="5" peptide="SLDPEMHRLGLA" peptide_prev_aa="K" peptide_next_aa="K" protein="DECOY_sp|Q9QZH6|ECSIT_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="44" calc_neutral_pep_mass="1353.671070" massdiff="2.015047" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="32956">
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    <search_score name="xcorr" value="1.056"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="11.5"/>
    <search_score name="sprank" value="40"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07138.07138.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7138" start_scan="7138" end_scan="7138" precursor_neutral_mass="1481.694632" assumed_charge="3" index="524" retention_time_sec="1593.3">
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    <search_score name="spscore" value="85.0"/>
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   <search_hit hit_rank="2" peptide="FDRDMNRLEER" peptide_prev_aa="N" peptide_next_aa="C" protein="sp|Q9D6Y9|GLGB_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="40" calc_neutral_pep_mass="1479.688860" massdiff="2.005771" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="28436">
    <search_score name="xcorr" value="1.259"/>
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    <search_score name="spscore" value="73.2"/>
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   <search_hit hit_rank="3" peptide="MRQGEATFIEER" peptide_prev_aa="N" peptide_next_aa="R" protein="sp|A2AJB1-2|CC183_MOUSE" num_tot_proteins="2" num_matched_ions="5" tot_num_ions="44" calc_neutral_pep_mass="1481.693262" massdiff="0.001369" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="28436">
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    <search_score name="deltacn" value="0.004"/>
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   <search_hit hit_rank="4" peptide="TGQFCHAATLLFN" peptide_prev_aa="R" peptide_next_aa="N" protein="DECOY_sp|Q14C59|TM11B_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="48" calc_neutral_pep_mass="1478.697634" massdiff="2.996997" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="28436">
    <alternative_protein protein="DECOY_sp|Q14C59|TM11B_MOUSE"/>
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   <search_hit hit_rank="5" peptide="TAMNSTGQRTEER" peptide_prev_aa="E" peptide_next_aa="S" protein="sp|Q52KR3-6|PRUN2_MOUSE" num_tot_proteins="2" num_matched_ions="5" tot_num_ions="48" calc_neutral_pep_mass="1479.673604" massdiff="2.021028" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="28436">
    <alternative_protein protein="sp|Q52KR3|PRUN2_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07142.07142.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7142" start_scan="7142" end_scan="7142" precursor_neutral_mass="699.426914" assumed_charge="2" index="525" retention_time_sec="1594.1">
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    <alternative_protein protein="sp|Q99NE5|RIMS1_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q7M6Y6-2|MRO2B_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q7M6Y6|MRO2B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CDJ8|STON1_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q3TYS2|CYBC1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6PGF3|MED16_MOUSE"/>
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   <search_hit hit_rank="3" peptide="LVMRV" peptide_prev_aa="K" peptide_next_aa="K" protein="DECOY_sp|Q920H4|ACM5_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="616.373052" massdiff="-0.000703" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="23972">
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   </search_hit>
   <search_hit hit_rank="4" peptide="VLMVR" peptide_prev_aa="N" peptide_next_aa="L" protein="sp|Q02357-2|ANK1_MOUSE" num_tot_proteins="18" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="616.373052" massdiff="-0.000703" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="23972">
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    <alternative_protein protein="sp|Q02357|ANK1_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|A2A9C3-2|SZT2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2A9C3|SZT2_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q91V14|S12A5_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9D593|VATE2_MOUSE"/>
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    <search_score name="sprank" value="3"/>
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   </search_hit>
   <search_hit hit_rank="5" peptide="IVRVM" peptide_prev_aa="R" peptide_next_aa="P" protein="sp|P33435|MMP13_MOUSE" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="8" calc_neutral_pep_mass="616.373052" massdiff="-0.000703" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="23972">
    <alternative_protein protein="sp|Q99LE1-2|RIPL2_MOUSE"/>
    <alternative_protein protein="sp|Q99LE1|RIPL2_MOUSE"/>
    <search_score name="xcorr" value="0.677"/>
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    <search_score name="spscore" value="78.6"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="6.27E+01"/>
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  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07416.07416.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7416" start_scan="7416" end_scan="7416" precursor_neutral_mass="757.470432" assumed_charge="2" index="598" retention_time_sec="1649.2">
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    <search_score name="xcorr" value="1.246"/>
    <search_score name="deltacn" value="0.013"/>
    <search_score name="spscore" value="181.6"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="3.85E+00"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="GAQVLLR" peptide_prev_aa="H" peptide_next_aa="E" protein="sp|Q69ZS8|KAZRN_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="12" calc_neutral_pep_mass="755.465373" massdiff="2.005060" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="17768">
    <search_score name="xcorr" value="1.230"/>
    <search_score name="deltacn" value="0.000"/>
    <search_score name="spscore" value="192.8"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="4.54E+00"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="QQVIIR" peptide_prev_aa="A" peptide_next_aa="A" protein="sp|Q6NWW5-2|KIF24_MOUSE" num_tot_proteins="5" num_matched_ions="6" tot_num_ions="10" calc_neutral_pep_mass="755.465373" massdiff="2.005060" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="17768">
    <alternative_protein protein="sp|Q6NWW5|KIF24_MOUSE"/>
    <alternative_protein protein="sp|Q9D8C4|IN35_MOUSE"/>
    <alternative_protein protein="sp|Q9EQ20|MMSA_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BFZ6|IDI2_MOUSE"/>
    <search_score name="xcorr" value="1.230"/>
    <search_score name="deltacn" value="0.091"/>
    <search_score name="spscore" value="231.3"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="4.54E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="WAVLLR" peptide_prev_aa="S" peptide_next_aa="R" protein="DECOY_sp|Q63870|CO7A1_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="10" calc_neutral_pep_mass="756.464645" massdiff="1.005788" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="17768">
    <alternative_protein protein="DECOY_sp|Q63870|CO7A1_MOUSE"/>
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    <search_score name="deltacn" value="0.014"/>
    <search_score name="spscore" value="131.4"/>
    <search_score name="sprank" value="18"/>
    <search_score name="expect" value="1.43E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="AGQIVLR" peptide_prev_aa="V" peptide_next_aa="W" protein="sp|Q9QXW9|LAT2_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="12" calc_neutral_pep_mass="755.465373" massdiff="2.005060" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="17768">
    <search_score name="xcorr" value="1.102"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="110.1"/>
    <search_score name="sprank" value="25"/>
    <search_score name="expect" value="1.69E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07420.07420.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7420" start_scan="7420" end_scan="7420" precursor_neutral_mass="699.427830" assumed_charge="2" index="599" retention_time_sec="1650.0">
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    <alternative_protein protein="sp|Q3URY6|ARMC2_MOUSE"/>
    <alternative_protein protein="sp|Q61425|HCDH_MOUSE"/>
    <alternative_protein protein="sp|Q8C6Y6-2|ASB14_MOUSE"/>
    <alternative_protein protein="sp|Q8C6Y6|ASB14_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6P5F7-2|TTYH3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6P5F7|TTYH3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8BKS9|PUM3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8K358|PIGU_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R104|SIR3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R3F5|FABD_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q91WD1|RPC4_MOUSE"/>
    <search_score name="xcorr" value="1.353"/>
    <search_score name="deltacn" value="0.047"/>
    <search_score name="spscore" value="308.4"/>
    <search_score name="sprank" value="1"/>
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   <search_hit hit_rank="2" peptide="IIEGIR" peptide_prev_aa="L" peptide_next_aa="L" protein="sp|A2ASS6-2|TITIN_MOUSE" num_tot_proteins="17" num_matched_ions="7" tot_num_ions="10" calc_neutral_pep_mass="699.427925" massdiff="-0.000095" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="11038">
    <alternative_protein protein="sp|A2ASS6|TITIN_MOUSE"/>
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    <alternative_protein protein="sp|O35166|GOSR2_MOUSE"/>
    <alternative_protein protein="sp|Q2QI47-2|USH2A_MOUSE"/>
    <alternative_protein protein="sp|Q2QI47-3|USH2A_MOUSE"/>
    <alternative_protein protein="sp|Q2QI47|USH2A_MOUSE"/>
    <alternative_protein protein="sp|Q3UPI1|GAK1B_MOUSE"/>
    <alternative_protein protein="sp|Q9EQN3|T22D4_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|D3YZU1|SHAN1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|E9PZQ0|RYR1_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|P19324|SERPH_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6P4T2|U520_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9D9J8|BPIA3_MOUSE"/>
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    <search_score name="spscore" value="300.2"/>
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   <search_hit hit_rank="3" peptide="ILELGR" peptide_prev_aa="K" peptide_next_aa="H" protein="sp|O35904|PK3CD_MOUSE" num_tot_proteins="17" num_matched_ions="6" tot_num_ions="10" calc_neutral_pep_mass="699.427925" massdiff="-0.000095" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="11038">
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    <alternative_protein protein="sp|P59328|WDHD1_MOUSE"/>
    <alternative_protein protein="sp|P70387|HFE_MOUSE"/>
    <alternative_protein protein="sp|Q3UWW6|GA2L3_MOUSE"/>
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    <alternative_protein protein="sp|Q6R0H7|GNAS1_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q8R4E4|MYOZ3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R4Y4-2|STAB1_MOUSE"/>
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    <search_score name="spscore" value="222.4"/>
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   <search_hit hit_rank="4" peptide="LIEVAR" peptide_prev_aa="Q" peptide_next_aa="R" protein="sp|F8VPU2|FARP1_MOUSE" num_tot_proteins="17" num_matched_ions="6" tot_num_ions="10" calc_neutral_pep_mass="699.427925" massdiff="-0.000095" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="11038">
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    <alternative_protein protein="DECOY_sp|A2AN08-5|UBR4_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2AN08|UBR4_MOUSE"/>
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   <search_hit hit_rank="5" peptide="LIGELR" peptide_prev_aa="R" peptide_next_aa="L" protein="sp|A2ASS6-2|TITIN_MOUSE" num_tot_proteins="20" num_matched_ions="7" tot_num_ions="10" calc_neutral_pep_mass="699.427925" massdiff="-0.000095" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="11038">
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    <alternative_protein protein="sp|Q3TZ89|SC31B_MOUSE"/>
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    <alternative_protein protein="sp|Q80XL7|MPPE1_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q9EPQ2-3|RPGR1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9EPQ2|RPGR1_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07436.07436.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7436" start_scan="7436" end_scan="7436" precursor_neutral_mass="889.496067" assumed_charge="2" index="600" retention_time_sec="1653.6">
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    <alternative_protein protein="sp|E9Q5F9|SETD2_MOUSE"/>
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   <search_hit hit_rank="3" peptide="AEVVSLSGK" peptide_prev_aa="Q" peptide_next_aa="Y" protein="DECOY_sp|Q8VBT1|TXLNB_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="16" calc_neutral_pep_mass="888.491647" massdiff="1.004420" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="34716">
    <alternative_protein protein="DECOY_sp|Q8VBT1|TXLNB_MOUSE"/>
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    <alternative_protein protein="sp|Q61029-3|LAP2B_MOUSE"/>
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    <alternative_protein protein="sp|Q61029|LAP2B_MOUSE"/>
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   <search_hit hit_rank="5" peptide="DLAVYPLV" peptide_prev_aa="R" peptide_next_aa="I" protein="DECOY_sp|Q61469-2|PLPP1_MOUSE" num_tot_proteins="2" num_matched_ions="5" tot_num_ions="14" calc_neutral_pep_mass="888.495670" massdiff="1.000397" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="34716">
    <alternative_protein protein="DECOY_sp|Q61469-2|PLPP1_MOUSE"/>
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    <search_score name="spscore" value="59.7"/>
    <search_score name="sprank" value="7"/>
    <search_score name="expect" value="1.01E+01"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07605.07605.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7605" start_scan="7605" end_scan="7605" precursor_neutral_mass="913.471409" assumed_charge="2" index="637" retention_time_sec="1688.1">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07606.07606.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7606" start_scan="7606" end_scan="7606" precursor_neutral_mass="620.352696" assumed_charge="2" index="638" retention_time_sec="1688.3">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07607.07607.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7607" start_scan="7607" end_scan="7607" precursor_neutral_mass="946.517735" assumed_charge="2" index="639" retention_time_sec="1688.4">
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   <search_hit hit_rank="3" peptide="VANMQLVR" peptide_prev_aa="T" peptide_next_aa="I" protein="sp|Q6PDC8-3|MFD4A_MOUSE" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="14" calc_neutral_pep_mass="945.506571" massdiff="1.011164" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="38668">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07608.07608.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7608" start_scan="7608" end_scan="7608" precursor_neutral_mass="627.405735" assumed_charge="2" index="640" retention_time_sec="1688.6">
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    <alternative_protein protein="sp|A7XUZ6|SKIT6_MOUSE"/>
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    <alternative_protein protein="sp|F7A4A7|OTOGL_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07758.07758.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7758" start_scan="7758" end_scan="7758" precursor_neutral_mass="839.447605" assumed_charge="2" index="685" retention_time_sec="1718.4">
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    <search_score name="sprank" value="5"/>
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  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07761.07761.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7761" start_scan="7761" end_scan="7761" precursor_neutral_mass="1698.843575" assumed_charge="4" index="686" retention_time_sec="1718.9">
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   </search_hit>
   <search_hit hit_rank="2" peptide="TFVLLMIMYFDFK" peptide_prev_aa="K" peptide_next_aa="L" protein="sp|O88962|CP8B1_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="72" calc_neutral_pep_mass="1698.840095" massdiff="0.003480" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="37802">
    <modification_info modified_peptide="TFVLLM[147]IM[147]YFDFK">
     <mod_aminoacid_mass position="6" mass="147.035385" variable="15.994900" source="param"/>
     <mod_aminoacid_mass position="8" mass="147.035385" variable="15.994900" source="param"/>
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    <search_score name="xcorr" value="1.230"/>
    <search_score name="deltacn" value="0.062"/>
    <search_score name="spscore" value="29.4"/>
    <search_score name="sprank" value="12"/>
    <search_score name="expect" value="1.11E+00"/>
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   <search_hit hit_rank="3" peptide="TLMSDTVVNLTCLSK" peptide_prev_aa="F" peptide_next_aa="A" protein="DECOY_sp|Q78KK3|S22AI_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="84" calc_neutral_pep_mass="1696.837544" massdiff="2.006031" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="37802">
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     <mod_aminoacid_mass position="12" mass="160.030649" static="57.021464"/>
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    <search_score name="deltacn" value="0.038"/>
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   <search_hit hit_rank="4" peptide="GGRFVHYWVSTGGFK" peptide_prev_aa="D" peptide_next_aa="I" protein="DECOY_sp|Q6P1G2-3|KDM2B_MOUSE" num_tot_proteins="2" num_matched_ions="7" tot_num_ions="84" calc_neutral_pep_mass="1696.847410" massdiff="1.996165" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="37802">
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   <search_hit hit_rank="5" peptide="GDAKPEPESQVSEVPK" peptide_prev_aa="E" peptide_next_aa="T" protein="sp|Q99J36|THUM1_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="90" calc_neutral_pep_mass="1695.831545" massdiff="3.012030" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="37802">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07762.07762.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7762" start_scan="7762" end_scan="7762" precursor_neutral_mass="620.365879" assumed_charge="2" index="687" retention_time_sec="1719.1">
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    <alternative_protein protein="DECOY_sp|Q61188|EZH2_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q9DBN5-2|LONP2_MOUSE"/>
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    <alternative_protein protein="sp|P21981|TGM2_MOUSE"/>
    <alternative_protein protein="sp|P35569|IRS1_MOUSE"/>
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    <alternative_protein protein="sp|Q60720|CY561_MOUSE"/>
    <alternative_protein protein="sp|Q61647|HYAS1_MOUSE"/>
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    <alternative_protein protein="sp|Q8BH65-2|DEN6A_MOUSE"/>
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    <alternative_protein protein="sp|Q8BH65|DEN6A_MOUSE"/>
    <alternative_protein protein="sp|Q8JZU2|TXTP_MOUSE"/>
    <alternative_protein protein="sp|Q8K3H5|MYO3A_MOUSE"/>
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    <alternative_protein protein="sp|Q9CPZ3|CA185_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q91WJ7|SPS2L_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.07763.07763.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=7763" start_scan="7763" end_scan="7763" precursor_neutral_mass="1199.617161" assumed_charge="2" index="688" retention_time_sec="1719.2">
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   <search_hit hit_rank="3" peptide="VACHTERKAK" peptide_prev_aa="Y" peptide_next_aa="L" protein="sp|Q99PN0|SC5A5_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="18" calc_neutral_pep_mass="1198.624075" massdiff="0.993086" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="29924">
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   <search_hit hit_rank="5" peptide="ESNQPQVRNK" peptide_prev_aa="S" peptide_next_aa="D" protein="DECOY_sp|Q8K3A4|RHNO1_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="18" calc_neutral_pep_mass="1198.605448" massdiff="1.011713" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="29924">
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    <search_score name="spscore" value="47.2"/>
    <search_score name="sprank" value="15"/>
    <search_score name="expect" value="5.94E+00"/>
   </search_hit>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08082.08082.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8082" start_scan="8082" end_scan="8082" precursor_neutral_mass="1375.705052" assumed_charge="2" index="771" retention_time_sec="1783.4">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08268.08268.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8268" start_scan="8268" end_scan="8268" precursor_neutral_mass="614.399449" assumed_charge="2" index="828" retention_time_sec="1819.6">
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   <search_hit hit_rank="5" peptide="AVSKTPNTER" peptide_prev_aa="L" peptide_next_aa="Q" protein="sp|Q8CJ91-2|C209B_MOUSE" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="18" calc_neutral_pep_mass="1101.577836" massdiff="-0.000348" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="36070">
    <alternative_protein protein="sp|Q8CJ91-3|C209B_MOUSE"/>
    <search_score name="xcorr" value="0.625"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="36.2"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="1.21E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08625.08625.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8625" start_scan="8625" end_scan="8625" precursor_neutral_mass="1645.736302" assumed_charge="2" index="921" retention_time_sec="1891.8">
  <search_result>
   <search_hit hit_rank="1" peptide="GTSFEAAATSGGSASSEK" peptide_prev_aa="R" peptide_next_aa="A" protein="sp|Q99LC5|ETFA_MOUSE" num_tot_proteins="1" num_matched_ions="12" tot_num_ions="34" calc_neutral_pep_mass="1643.727474" massdiff="2.008828" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="17726">
    <search_score name="xcorr" value="2.422"/>
    <search_score name="deltacn" value="0.556"/>
    <search_score name="spscore" value="404.9"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="7.79E-06"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="FMWGISDKCSAGLSS" peptide_prev_aa="K" peptide_next_aa="K" protein="DECOY_sp|Q9ER58|TICN2_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="28" calc_neutral_pep_mass="1644.727614" massdiff="1.008688" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="17726">
    <alternative_protein protein="DECOY_sp|Q9ER58|TICN2_MOUSE"/>
    <modification_info modified_peptide="FMWGISDKCSAGLSS">
     <mod_aminoacid_mass position="9" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="1.076"/>
    <search_score name="deltacn" value="0.041"/>
    <search_score name="spscore" value="51.4"/>
    <search_score name="sprank" value="7"/>
    <search_score name="expect" value="2.21E+00"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="LMIMAMKNSEVMSQ" peptide_prev_aa="K" peptide_next_aa="L" protein="sp|Q640L5-2|CCD18_MOUSE" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="26" calc_neutral_pep_mass="1643.739077" massdiff="1.997224" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="17726">
    <alternative_protein protein="sp|Q640L5|CCD18_MOUSE"/>
    <modification_info modified_peptide="LM[147]IM[147]AMKNSEVMSQ">
     <mod_aminoacid_mass position="2" mass="147.035385" variable="15.994900" source="param"/>
     <mod_aminoacid_mass position="4" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="1.032"/>
    <search_score name="deltacn" value="0.006"/>
    <search_score name="spscore" value="32.8"/>
    <search_score name="sprank" value="17"/>
    <search_score name="expect" value="3.35E+00"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="ASSSATAAADPPPSAVCS" peptide_prev_aa="R" peptide_next_aa="S" protein="DECOY_sp|A2ASZ8-2|SCMC2_MOUSE" num_tot_proteins="2" num_matched_ions="7" tot_num_ions="34" calc_neutral_pep_mass="1645.725365" massdiff="0.010936" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="17726">
    <alternative_protein protein="DECOY_sp|A2ASZ8-2|SCMC2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2ASZ8-3|SCMC2_MOUSE"/>
    <modification_info modified_peptide="ASSSATAAADPPPSAVCS">
     <mod_aminoacid_mass position="17" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="1.026"/>
    <search_score name="deltacn" value="0.021"/>
    <search_score name="spscore" value="67.4"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="3.55E+00"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="GTEFDIGMKEAQRM" peptide_prev_aa="R" peptide_next_aa="H" protein="DECOY_sp|B2RRD7|BRPF1_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="26" calc_neutral_pep_mass="1643.728313" massdiff="2.007989" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="17726">
    <alternative_protein protein="DECOY_sp|B2RRD7|BRPF1_MOUSE"/>
    <modification_info modified_peptide="GTEFDIGM[147]KEAQRM[147]">
     <mod_aminoacid_mass position="8" mass="147.035385" variable="15.994900" source="param"/>
     <mod_aminoacid_mass position="14" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="1.004"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="57.9"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="4.35E+00"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08630.08630.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8630" start_scan="8630" end_scan="8630" precursor_neutral_mass="678.369541" assumed_charge="2" index="922" retention_time_sec="1892.8">
  <search_result>
   <search_hit hit_rank="1" peptide="LYDLR" peptide_prev_aa="I" peptide_next_aa="A" protein="sp|O35129|PHB2_MOUSE" num_tot_proteins="86" num_matched_ions="6" tot_num_ions="8" calc_neutral_pep_mass="678.370075" massdiff="-0.000534" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="29118">
    <alternative_protein protein="sp|P06800-5|PTPRC_MOUSE"/>
    <alternative_protein protein="sp|P06800-6|PTPRC_MOUSE"/>
    <alternative_protein protein="sp|P06800|PTPRC_MOUSE"/>
    <alternative_protein protein="sp|P18826-2|KPB1_MOUSE"/>
    <alternative_protein protein="sp|P18826|KPB1_MOUSE"/>
    <alternative_protein protein="sp|P48787|TNNI3_MOUSE"/>
    <alternative_protein protein="sp|P62881-2|GNB5_MOUSE"/>
    <alternative_protein protein="sp|P62881|GNB5_MOUSE"/>
    <alternative_protein protein="sp|P97817|CDR2_MOUSE"/>
    <alternative_protein protein="sp|Q3V3K7-2|GCNT7_MOUSE"/>
    <alternative_protein protein="sp|Q3V3K7|GCNT7_MOUSE"/>
    <alternative_protein protein="sp|Q5RJG1|NOL10_MOUSE"/>
    <alternative_protein protein="sp|Q62383|SPT6H_MOUSE"/>
    <alternative_protein protein="sp|Q6NVE8-2|WDR44_MOUSE"/>
    <alternative_protein protein="sp|Q6NVE8|WDR44_MOUSE"/>
    <alternative_protein protein="sp|Q7TS75|AMER1_MOUSE"/>
    <alternative_protein protein="sp|Q80ZK9|WDTC1_MOUSE"/>
    <alternative_protein protein="sp|Q8BFQ4|WDR82_MOUSE"/>
    <alternative_protein protein="sp|Q8BMG8|MFTC_MOUSE"/>
    <alternative_protein protein="sp|Q8BZN6-2|DOC10_MOUSE"/>
    <search_score name="xcorr" value="0.969"/>
    <search_score name="deltacn" value="0.127"/>
    <search_score name="spscore" value="247.2"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="2.68E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="LDYLR" peptide_prev_aa="K" peptide_next_aa="H" protein="sp|O08677|KNG1_MOUSE" num_tot_proteins="86" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="678.370075" massdiff="-0.000534" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="29118">
    <alternative_protein protein="sp|P00520-2|ABL1_MOUSE"/>
    <alternative_protein protein="sp|P00520-3|ABL1_MOUSE"/>
    <alternative_protein protein="sp|P00520-4|ABL1_MOUSE"/>
    <alternative_protein protein="sp|P00520|ABL1_MOUSE"/>
    <alternative_protein protein="sp|P20067-2|ID1_MOUSE"/>
    <alternative_protein protein="sp|P20067|ID1_MOUSE"/>
    <alternative_protein protein="sp|P42682-2|TXK_MOUSE"/>
    <alternative_protein protein="sp|P42682|TXK_MOUSE"/>
    <alternative_protein protein="sp|P97363|SPTC2_MOUSE"/>
    <alternative_protein protein="sp|Q3UGY8|BIG3_MOUSE"/>
    <alternative_protein protein="sp|Q4JIM5|ABL2_MOUSE"/>
    <alternative_protein protein="sp|Q50H33-2|KCTD8_MOUSE"/>
    <alternative_protein protein="sp|Q50H33|KCTD8_MOUSE"/>
    <alternative_protein protein="sp|Q5DTY9|KCD16_MOUSE"/>
    <alternative_protein protein="sp|Q6PFD9|NUP98_MOUSE"/>
    <alternative_protein protein="sp|Q6WVG3|KCD12_MOUSE"/>
    <alternative_protein protein="sp|Q811L6|MAST4_MOUSE"/>
    <alternative_protein protein="sp|Q8BG60-2|TXNIP_MOUSE"/>
    <alternative_protein protein="sp|Q8BG60|TXNIP_MOUSE"/>
    <alternative_protein protein="sp|Q8CCA0|DCNL4_MOUSE"/>
    <search_score name="xcorr" value="0.846"/>
    <search_score name="deltacn" value="0.039"/>
    <search_score name="spscore" value="150.3"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="6.84E+01"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="LYDRL" peptide_prev_aa="K" peptide_next_aa="L" protein="sp|Q8VHE6|DYH5_MOUSE" num_tot_proteins="4" num_matched_ions="6" tot_num_ions="8" calc_neutral_pep_mass="678.370075" massdiff="-0.000534" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="29118">
    <alternative_protein protein="sp|Q99JH7|CSTN3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|O70578|CCG1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9D7N9|APMAP_MOUSE"/>
    <search_score name="xcorr" value="0.814"/>
    <search_score name="deltacn" value="0.110"/>
    <search_score name="spscore" value="210.6"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="8.77E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="YLDLR" peptide_prev_aa="V" peptide_next_aa="G" protein="sp|P13439|UMPS_MOUSE" num_tot_proteins="45" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="678.370075" massdiff="-0.000534" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="29118">
    <alternative_protein protein="sp|Q03142-2|FGFR4_MOUSE"/>
    <alternative_protein protein="sp|Q03142|FGFR4_MOUSE"/>
    <alternative_protein protein="sp|Q2VLH6-2|C163A_MOUSE"/>
    <alternative_protein protein="sp|Q2VLH6|C163A_MOUSE"/>
    <alternative_protein protein="sp|Q5M8M9|LRC52_MOUSE"/>
    <alternative_protein protein="sp|Q80V03-2|ADCK5_MOUSE"/>
    <alternative_protein protein="sp|Q80V03|ADCK5_MOUSE"/>
    <alternative_protein protein="sp|Q810B9|SLIK3_MOUSE"/>
    <alternative_protein protein="sp|Q8BGV0|SYNM_MOUSE"/>
    <alternative_protein protein="sp|Q8BIP0|SYDM_MOUSE"/>
    <alternative_protein protein="sp|Q8BYW9|EOGT_MOUSE"/>
    <alternative_protein protein="sp|Q8CHS4|PLCX1_MOUSE"/>
    <alternative_protein protein="sp|Q8R2Y2|MUC18_MOUSE"/>
    <alternative_protein protein="sp|Q91W20|LRC26_MOUSE"/>
    <alternative_protein protein="sp|Q923W1|TGS1_MOUSE"/>
    <alternative_protein protein="sp|Q9Z0L0|TPBG_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2BH40-2|ARI1A_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2BH40-3|ARI1A_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2BH40-4|ARI1A_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A2BH40|ARI1A_MOUSE"/>
    <search_score name="xcorr" value="0.724"/>
    <search_score name="deltacn" value="0.042"/>
    <search_score name="spscore" value="156.2"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="1.73E+02"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="LYVER" peptide_prev_aa="A" peptide_next_aa="N" protein="sp|A2AC93-2|DNAI2_MOUSE" num_tot_proteins="24" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="678.370075" massdiff="-0.000534" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="29118">
    <alternative_protein protein="sp|A2AC93|DNAI2_MOUSE"/>
    <alternative_protein protein="sp|A2AGL3-2|RYR3_MOUSE"/>
    <alternative_protein protein="sp|A2AGL3|RYR3_MOUSE"/>
    <alternative_protein protein="sp|E9PYY5-2|DNAI4_MOUSE"/>
    <alternative_protein protein="sp|E9PYY5|DNAI4_MOUSE"/>
    <alternative_protein protein="sp|E9Q401|RYR2_MOUSE"/>
    <alternative_protein protein="sp|Q6ZQA6|IGSF3_MOUSE"/>
    <alternative_protein protein="sp|Q8C7U1|N4BP3_MOUSE"/>
    <alternative_protein protein="sp|Q9JKK8|ATR_MOUSE"/>
    <alternative_protein protein="DECOY_sp|A7DTG3|SRTD4_MOUSE"/>
    <alternative_protein protein="DECOY_sp|D3YTS9|PPAT_MOUSE"/>
    <alternative_protein protein="DECOY_sp|O08550|KMT2B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P59113|FERM1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6PAR5-2|GAPD1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6PAR5-4|GAPD1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6PAR5-5|GAPD1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6PAR5-6|GAPD1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6PAR5|GAPD1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R323|RFC3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q99PT9|KIF19_MOUSE"/>
    <search_score name="xcorr" value="0.694"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="79.7"/>
    <search_score name="sprank" value="9"/>
    <search_score name="expect" value="2.18E+02"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08631.08631.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8631" start_scan="8631" end_scan="8631" precursor_neutral_mass="650.374302" assumed_charge="2" index="923" retention_time_sec="1892.9">
  <search_result>
   <search_hit hit_rank="1" peptide="LSLYR" peptide_prev_aa="E" peptide_next_aa="I" protein="sp|A4Q9F0|TTLL7_MOUSE" num_tot_proteins="67" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="650.375161" massdiff="-0.000859" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16734">
    <alternative_protein protein="sp|E9PZQ0|RYR1_MOUSE"/>
    <alternative_protein protein="sp|E9Q4Z2|ACACB_MOUSE"/>
    <alternative_protein protein="sp|O35594|IFT81_MOUSE"/>
    <alternative_protein protein="sp|O70472|TM131_MOUSE"/>
    <alternative_protein protein="sp|P07758|A1AT1_MOUSE"/>
    <alternative_protein protein="sp|P22599|A1AT2_MOUSE"/>
    <alternative_protein protein="sp|P43021|NODAL_MOUSE"/>
    <alternative_protein protein="sp|P43027|GDF5_MOUSE"/>
    <alternative_protein protein="sp|Q00896|A1AT3_MOUSE"/>
    <alternative_protein protein="sp|Q00898|A1AT5_MOUSE"/>
    <alternative_protein protein="sp|Q0VAV2|EXPH5_MOUSE"/>
    <alternative_protein protein="sp|Q3U276|SDHF1_MOUSE"/>
    <alternative_protein protein="sp|Q3USY0-2|S38AB_MOUSE"/>
    <alternative_protein protein="sp|Q3USY0-3|S38AB_MOUSE"/>
    <alternative_protein protein="sp|Q3USY0|S38AB_MOUSE"/>
    <alternative_protein protein="sp|Q3V0Q1|DYH12_MOUSE"/>
    <alternative_protein protein="sp|Q5DTZ0|NYNRI_MOUSE"/>
    <alternative_protein protein="sp|Q6NWW9|FND3B_MOUSE"/>
    <alternative_protein protein="sp|Q6ZPR4|KCNT1_MOUSE"/>
    <alternative_protein protein="sp|Q80TB7-2|ZSWM6_MOUSE"/>
    <search_score name="xcorr" value="1.165"/>
    <search_score name="deltacn" value="0.208"/>
    <search_score name="spscore" value="214.2"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="8.85E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="ISYLR" peptide_prev_aa="T" peptide_next_aa="H" protein="sp|A2A995|FYB2_MOUSE" num_tot_proteins="134" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="650.375161" massdiff="-0.000859" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16734">
    <alternative_protein protein="sp|E9Q4J9|AGRF2_MOUSE"/>
    <alternative_protein protein="sp|E9Q6I0|V2116_MOUSE"/>
    <alternative_protein protein="sp|O35367|KERA_MOUSE"/>
    <alternative_protein protein="sp|P0C872|JMJD7_MOUSE"/>
    <alternative_protein protein="sp|P23299|KCNE1_MOUSE"/>
    <alternative_protein protein="sp|P26323|FLI1_MOUSE"/>
    <alternative_protein protein="sp|P28654|PGS2_MOUSE"/>
    <alternative_protein protein="sp|P56382|ATP5E_MOUSE"/>
    <alternative_protein protein="sp|Q0VBL6-2|HIF3A_MOUSE"/>
    <alternative_protein protein="sp|Q0VBL6-3|HIF3A_MOUSE"/>
    <alternative_protein protein="sp|Q0VBL6|HIF3A_MOUSE"/>
    <alternative_protein protein="sp|Q5FW85|ECM2_MOUSE"/>
    <alternative_protein protein="sp|Q61056-2|TRPC1_MOUSE"/>
    <alternative_protein protein="sp|Q61056|TRPC1_MOUSE"/>
    <alternative_protein protein="sp|Q61221-2|HIF1A_MOUSE"/>
    <alternative_protein protein="sp|Q61221|HIF1A_MOUSE"/>
    <alternative_protein protein="sp|Q6IFT4|RHG20_MOUSE"/>
    <alternative_protein protein="sp|Q78DX7|ROS1_MOUSE"/>
    <alternative_protein protein="sp|Q80YT7|MYOME_MOUSE"/>
    <alternative_protein protein="sp|Q8BHG1|NRDC_MOUSE"/>
    <search_score name="xcorr" value="0.923"/>
    <search_score name="deltacn" value="0.002"/>
    <search_score name="spscore" value="132.8"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="2.33E+02"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="SILYR" peptide_prev_aa="V" peptide_next_aa="K" protein="sp|B1AS29|GRIK3_MOUSE" num_tot_proteins="90" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="650.375161" massdiff="-0.000859" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16734">
    <alternative_protein protein="sp|D3YTS9|PPAT_MOUSE"/>
    <alternative_protein protein="sp|E2JF22|PIEZ1_MOUSE"/>
    <alternative_protein protein="sp|E9PVD3|PCD16_MOUSE"/>
    <alternative_protein protein="sp|J3S6Y1-3|TSEAR_MOUSE"/>
    <alternative_protein protein="sp|J3S6Y1|TSEAR_MOUSE"/>
    <alternative_protein protein="sp|P26952-2|IL3RA_MOUSE"/>
    <alternative_protein protein="sp|P26952-3|IL3RA_MOUSE"/>
    <alternative_protein protein="sp|P26952|IL3RA_MOUSE"/>
    <alternative_protein protein="sp|P39087-2|GRIK2_MOUSE"/>
    <alternative_protein protein="sp|P39087|GRIK2_MOUSE"/>
    <alternative_protein protein="sp|P70298|CUX2_MOUSE"/>
    <alternative_protein protein="sp|P97950|RB33A_MOUSE"/>
    <alternative_protein protein="sp|Q0V8T7|CTP5C_MOUSE"/>
    <alternative_protein protein="sp|Q0V8T8-2|CTP5B_MOUSE"/>
    <alternative_protein protein="sp|Q0V8T8|CTP5B_MOUSE"/>
    <alternative_protein protein="sp|Q0V8T9|CTP5A_MOUSE"/>
    <alternative_protein protein="sp|Q3U6K5-2|SPAT6_MOUSE"/>
    <alternative_protein protein="sp|Q3U6K5|SPAT6_MOUSE"/>
    <alternative_protein protein="sp|Q3UFB7|NTRK1_MOUSE"/>
    <alternative_protein protein="sp|Q497Q6-2|F228B_MOUSE"/>
    <search_score name="xcorr" value="0.921"/>
    <search_score name="deltacn" value="0.007"/>
    <search_score name="spscore" value="103.4"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="2.34E+02"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="VTIYR" peptide_prev_aa="V" peptide_next_aa="M" protein="sp|P32020|SCP2_MOUSE" num_tot_proteins="19" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="650.375161" massdiff="-0.000859" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="16734">
    <alternative_protein protein="sp|Q4VBE4-2|EGFLA_MOUSE"/>
    <alternative_protein protein="sp|Q4VBE4|EGFLA_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08865.08865.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8865" start_scan="8865" end_scan="8865" precursor_neutral_mass="636.322361" assumed_charge="2" index="983" retention_time_sec="1940.7">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08972.08972.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8972" start_scan="8972" end_scan="8972" precursor_neutral_mass="822.423863" assumed_charge="2" index="1015" retention_time_sec="1962.1">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08975.08975.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8975" start_scan="8975" end_scan="8975" precursor_neutral_mass="620.363255" assumed_charge="2" index="1016" retention_time_sec="1962.6">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08976.08976.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8976" start_scan="8976" end_scan="8976" precursor_neutral_mass="1108.572117" assumed_charge="2" index="1017" retention_time_sec="1962.8">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.08977.08977.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=8977" start_scan="8977" end_scan="8977" precursor_neutral_mass="1022.525120" assumed_charge="2" index="1018" retention_time_sec="1962.9">
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    <alternative_protein protein="DECOY_sp|Q9EPK2|XRP2_MOUSE"/>
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   <search_hit hit_rank="5" peptide="EVTEEELKK" peptide_prev_aa="I" peptide_next_aa="H" protein="sp|Q3TDX8-5|NB5R4_MOUSE" num_tot_proteins="2" num_matched_ions="6" tot_num_ions="16" calc_neutral_pep_mass="1103.571020" massdiff="1.003905" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="39272">
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 </spectrum_query>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09125.09125.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9125" start_scan="9125" end_scan="9125" precursor_neutral_mass="924.399754" assumed_charge="2" index="1056" retention_time_sec="1993.0">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09132.09132.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9132" start_scan="9132" end_scan="9132" precursor_neutral_mass="1462.742850" assumed_charge="3" index="1058" retention_time_sec="1994.4">
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    <alternative_protein protein="sp|Q8VC85|LSM1_MOUSE"/>
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    <alternative_protein protein="sp|Q8C754|VPS52_MOUSE"/>
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   <search_hit hit_rank="5" peptide="HLIRVL" peptide_prev_aa="R" peptide_next_aa="V" protein="sp|P60330|ESPL1_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="10" calc_neutral_pep_mass="749.491194" massdiff="-0.000620" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1732">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09206.09206.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9206" start_scan="9206" end_scan="9206" precursor_neutral_mass="1536.653660" assumed_charge="2" index="1079" retention_time_sec="2009.4">
  <search_result>
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    <search_score name="deltacn" value="0.069"/>
    <search_score name="spscore" value="24.3"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="1.68E+00"/>
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   <search_hit hit_rank="2" peptide="EAEAQCREQASKM" peptide_prev_aa="K" peptide_next_aa="D" protein="DECOY_sp|Q6P9Q6-2|FKB15_MOUSE" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="24" calc_neutral_pep_mass="1536.666076" massdiff="-0.012416" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="10212">
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   <search_hit hit_rank="3" peptide="MVMFDLAWMMSK" peptide_prev_aa="A" peptide_next_aa="D" protein="sp|Q9Z1X9|CDC45_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="22" calc_neutral_pep_mass="1536.648457" massdiff="0.005203" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="10212">
    <modification_info modified_peptide="M[147]VM[147]FDLAWM[147]MSK">
     <mod_aminoacid_mass position="1" mass="147.035385" variable="15.994900" source="param"/>
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     <mod_aminoacid_mass position="9" mass="147.035385" variable="15.994900" source="param"/>
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    <search_score name="xcorr" value="0.805"/>
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   <search_hit hit_rank="4" peptide="GSHCYYFSMEKK" peptide_prev_aa="N" peptide_next_aa="D" protein="sp|O88713|KLRG1_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="22" calc_neutral_pep_mass="1535.653721" massdiff="0.999939" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="10212">
    <modification_info modified_peptide="GSHCYYFSMEKK">
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    <search_score name="xcorr" value="0.758"/>
    <search_score name="deltacn" value="0.034"/>
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   <search_hit hit_rank="5" peptide="LCPCADAGSDSTKR" peptide_prev_aa="V" peptide_next_aa="S" protein="sp|P41230-2|KDM5C_MOUSE" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="26" calc_neutral_pep_mass="1536.666077" massdiff="-0.012417" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="10212">
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     <mod_aminoacid_mass position="4" mass="160.030649" static="57.021464"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09209.09209.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9209" start_scan="9209" end_scan="9209" precursor_neutral_mass="699.452244" assumed_charge="2" index="1080" retention_time_sec="2010.0">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09211.09211.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9211" start_scan="9211" end_scan="9211" precursor_neutral_mass="870.512974" assumed_charge="2" index="1081" retention_time_sec="2010.4">
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    <search_score name="xcorr" value="1.425"/>
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    <search_score name="spscore" value="354.1"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09456.09456.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9456" start_scan="9456" end_scan="9456" precursor_neutral_mass="770.464207" assumed_charge="2" index="1155" retention_time_sec="2059.3">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09458.09458.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9458" start_scan="9458" end_scan="9458" precursor_neutral_mass="757.454197" assumed_charge="2" index="1157" retention_time_sec="2059.6">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09460.09460.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9460" start_scan="9460" end_scan="9460" precursor_neutral_mass="1167.659048" assumed_charge="3" index="1158" retention_time_sec="2059.9">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09479.09479.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9479" start_scan="9479" end_scan="9479" precursor_neutral_mass="717.420200" assumed_charge="2" index="1161" retention_time_sec="2063.9">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09482.09482.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9482" start_scan="9482" end_scan="9482" precursor_neutral_mass="600.395542" assumed_charge="2" index="1162" retention_time_sec="2064.5">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09483.09483.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9483" start_scan="9483" end_scan="9483" precursor_neutral_mass="858.445286" assumed_charge="2" index="1163" retention_time_sec="2064.6">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09487.09487.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9487" start_scan="9487" end_scan="9487" precursor_neutral_mass="647.400242" assumed_charge="2" index="1164" retention_time_sec="2065.4">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09488.09488.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9488" start_scan="9488" end_scan="9488" precursor_neutral_mass="1500.704642" assumed_charge="3" index="1165" retention_time_sec="2065.6">
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    <alternative_protein protein="sp|Q9Z2U2|ZN292_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09880.09880.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9880" start_scan="9880" end_scan="9880" precursor_neutral_mass="799.435948" assumed_charge="2" index="1283" retention_time_sec="2143.3">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09882.09882.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9882" start_scan="9882" end_scan="9882" precursor_neutral_mass="1468.840903" assumed_charge="3" index="1284" retention_time_sec="2143.6">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09885.09885.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9885" start_scan="9885" end_scan="9885" precursor_neutral_mass="861.443516" assumed_charge="2" index="1285" retention_time_sec="2144.2">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09891.09891.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9891" start_scan="9891" end_scan="9891" precursor_neutral_mass="668.363865" assumed_charge="2" index="1286" retention_time_sec="2145.5">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09908.09908.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9908" start_scan="9908" end_scan="9908" precursor_neutral_mass="1145.580418" assumed_charge="2" index="1293" retention_time_sec="2148.6">
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   <search_hit hit_rank="2" peptide="YAPGPVRAVTD" peptide_prev_aa="R" peptide_next_aa="H" protein="DECOY_sp|Q3UH93|PLXD1_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="20" calc_neutral_pep_mass="1144.587673" massdiff="0.992745" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="33386">
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    <search_score name="spscore" value="43.4"/>
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   <search_hit hit_rank="3" peptide="VNPDPFTAASK" peptide_prev_aa="Q" peptide_next_aa="Y" protein="DECOY_sp|Q61069|USF1_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="20" calc_neutral_pep_mass="1145.571688" massdiff="0.008729" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="33386">
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    <alternative_protein protein="DECOY_sp|Q9R1V6-13|ADA22_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q9R1V6-16|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-17|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-18|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-19|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-1|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-20|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-21|ADA22_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q9R1V6-4|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-5|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-6|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-7|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-8|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-9|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6|ADA22_MOUSE"/>
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   <search_hit hit_rank="5" peptide="VMAALANGEVR" peptide_prev_aa="A" peptide_next_aa="I" protein="sp|Q3V3N7|BBS1_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="20" calc_neutral_pep_mass="1145.586278" massdiff="-0.005860" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="33386">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09917.09917.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9917" start_scan="9917" end_scan="9917" precursor_neutral_mass="614.410801" assumed_charge="2" index="1294" retention_time_sec="2150.6">
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    <alternative_protein protein="sp|A2BFL2|ZY11A_MOUSE"/>
    <alternative_protein protein="sp|A9Q751|PCDP1_MOUSE"/>
    <alternative_protein protein="sp|B1AZI6|THOC2_MOUSE"/>
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    <alternative_protein protein="sp|O35114|SCRB2_MOUSE"/>
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    <alternative_protein protein="sp|P11983|TCPA_MOUSE"/>
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    <alternative_protein protein="sp|A4QPC6|BT2A2_MOUSE"/>
    <alternative_protein protein="sp|D3YYU8|OBSL1_MOUSE"/>
    <alternative_protein protein="sp|D3Z4R1|HFM1_MOUSE"/>
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    <alternative_protein protein="sp|E9PXF8|MTMRD_MOUSE"/>
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    <alternative_protein protein="sp|E9Q555|RN213_MOUSE"/>
    <alternative_protein protein="sp|O70303|CIDEB_MOUSE"/>
    <alternative_protein protein="sp|O88990|ACTN3_MOUSE"/>
    <alternative_protein protein="sp|P0CW70|D19L2_MOUSE"/>
    <alternative_protein protein="sp|P14685|PSMD3_MOUSE"/>
    <alternative_protein protein="sp|P15508|SPTB1_MOUSE"/>
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    <alternative_protein protein="sp|P26039|TLN1_MOUSE"/>
    <alternative_protein protein="sp|P57780|ACTN4_MOUSE"/>
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   <search_hit hit_rank="3" peptide="ITLRL" peptide_prev_aa="R" peptide_next_aa="E" protein="sp|P21956-2|MFGM_MOUSE" num_tot_proteins="10" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="614.411546" massdiff="-0.000745" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="9654">
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    <alternative_protein protein="sp|Q6KCD5|NIPBL_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.09919.09919.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=9919" start_scan="9919" end_scan="9919" precursor_neutral_mass="958.544773" assumed_charge="2" index="1295" retention_time_sec="2150.9">
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   <search_hit hit_rank="5" peptide="LASSIAELR" peptide_prev_aa="F" peptide_next_aa="A" protein="DECOY_sp|Q8BQM4|HEAT3_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="16" calc_neutral_pep_mass="958.544745" massdiff="0.000028" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="28896">
    <alternative_protein protein="DECOY_sp|Q8BQM4|HEAT3_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10002.10002.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10002" start_scan="10002" end_scan="10002" precursor_neutral_mass="1245.680289" assumed_charge="3" index="1322" retention_time_sec="2167.2">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10008.10008.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10008" start_scan="10008" end_scan="10008" precursor_neutral_mass="792.376072" assumed_charge="2" index="1324" retention_time_sec="2168.4">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10017.10017.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10017" start_scan="10017" end_scan="10017" precursor_neutral_mass="1012.464573" assumed_charge="2" index="1326" retention_time_sec="2170.2">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10165.10165.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10165" start_scan="10165" end_scan="10165" precursor_neutral_mass="671.419956" assumed_charge="2" index="1367" retention_time_sec="2200.0">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10428.10428.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10428" start_scan="10428" end_scan="10428" precursor_neutral_mass="814.454746" assumed_charge="2" index="1444" retention_time_sec="2252.7">
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   <search_hit hit_rank="5" peptide="ELLGDLR" peptide_prev_aa="G" peptide_next_aa="C" protein="DECOY_sp|P05063|ALDOC_MOUSE" num_tot_proteins="2" num_matched_ions="7" tot_num_ions="12" calc_neutral_pep_mass="814.454868" massdiff="-0.000121" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="19320">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10431.10431.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10431" start_scan="10431" end_scan="10431" precursor_neutral_mass="612.431675" assumed_charge="2" index="1445" retention_time_sec="2253.3">
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    <alternative_protein protein="sp|O54965-2|RNF13_MOUSE"/>
    <alternative_protein protein="sp|O54965|RNF13_MOUSE"/>
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    <alternative_protein protein="sp|P05532|KIT_MOUSE"/>
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    <alternative_protein protein="sp|P61315|G3ST3_MOUSE"/>
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    <alternative_protein protein="sp|Q6ZQ12-1|NINL_MOUSE"/>
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    <alternative_protein protein="sp|Q6ZQ12|NINL_MOUSE"/>
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    <alternative_protein protein="sp|Q8K3V7|MNAR1_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10432.10432.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10432" start_scan="10432" end_scan="10432" precursor_neutral_mass="1213.618748" assumed_charge="2" index="1446" retention_time_sec="2253.4">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10434.10434.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10434" start_scan="10434" end_scan="10434" precursor_neutral_mass="1442.728506" assumed_charge="3" index="1447" retention_time_sec="2253.8">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10548.10548.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10548" start_scan="10548" end_scan="10548" precursor_neutral_mass="870.489781" assumed_charge="2" index="1481" retention_time_sec="2276.5">
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    <search_score name="expect" value="7.25E+00"/>
   </search_hit>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10605.10605.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10605" start_scan="10605" end_scan="10605" precursor_neutral_mass="1983.025948" assumed_charge="4" index="1499" retention_time_sec="2287.8">
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    <search_score name="sprank" value="1"/>
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   <search_hit hit_rank="2" peptide="TVANKMPVPGNLQVDAQGK" peptide_prev_aa="T" peptide_next_aa="S" protein="sp|P33896|INAR1_MOUSE" num_tot_proteins="1" num_matched_ions="12" tot_num_ions="108" calc_neutral_pep_mass="1982.025496" massdiff="1.000452" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="35502">
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    <search_score name="spscore" value="33.1"/>
    <search_score name="sprank" value="3"/>
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   <search_hit hit_rank="3" peptide="GGRSLTSGAVLPEPGCVLGGV" peptide_prev_aa="R" peptide_next_aa="T" protein="DECOY_sp|Q9NSB2|KRT84_HUMAN" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="120" calc_neutral_pep_mass="1982.025511" massdiff="1.000437" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="35502">
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    <search_score name="sprank" value="65"/>
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   <search_hit hit_rank="4" peptide="TAGERFATMVRVAESGATK" peptide_prev_aa="F" peptide_next_aa="T" protein="sp|Q9Z0L1|S1PR4_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="108" calc_neutral_pep_mass="1981.005109" massdiff="2.020839" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="35502">
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    <search_score name="spscore" value="20.0"/>
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    <search_score name="sprank" value="42"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10609.10609.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10609" start_scan="10609" end_scan="10609" precursor_neutral_mass="643.425633" assumed_charge="2" index="1500" retention_time_sec="2288.6">
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    <alternative_protein protein="sp|Q6P9R4|ARHGI_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q8CDN9-2|LRRC9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8CDN9|LRRC9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8K5B1-2|IL31R_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8K5B1-3|IL31R_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|P97291|CADH8_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P97313|PRKDC_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6UQ17|AT8B3_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9CQ73|PKP2_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9JIW5|SMAD9_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|B1AY13|UBP24_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10623.10623.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10623" start_scan="10623" end_scan="10623" precursor_neutral_mass="1065.518040" assumed_charge="2" index="1501" retention_time_sec="2291.7">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10628.10628.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10628" start_scan="10628" end_scan="10628" precursor_neutral_mass="1262.637425" assumed_charge="2" index="1502" retention_time_sec="2292.8">
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    <search_score name="deltacn" value="0.023"/>
    <search_score name="spscore" value="43.4"/>
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   <search_hit hit_rank="3" peptide="IVSIPSTNDGML" peptide_prev_aa="-" peptide_next_aa="V" protein="DECOY_sp|Q8VIJ8|NPRL3_MOUSE" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="22" calc_neutral_pep_mass="1261.622389" massdiff="1.015036" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="37932">
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    <search_score name="deltacn" value="0.074"/>
    <search_score name="spscore" value="23.5"/>
    <search_score name="sprank" value="35"/>
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   <search_hit hit_rank="4" peptide="IVSIYGDPDQR" peptide_prev_aa="E" peptide_next_aa="Q" protein="DECOY_sp|Q80VH0|BANK1_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1261.630266" massdiff="1.007159" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="37932">
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    <search_score name="spscore" value="41.3"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10682.10682.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10682" start_scan="10682" end_scan="10682" precursor_neutral_mass="1400.715048" assumed_charge="3" index="1521" retention_time_sec="2303.2">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10849.10849.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10849" start_scan="10849" end_scan="10849" precursor_neutral_mass="648.383518" assumed_charge="2" index="1575" retention_time_sec="2336.0">
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    <alternative_protein protein="sp|P35283|RAB12_MOUSE"/>
    <alternative_protein protein="sp|P41233|ABCA1_MOUSE"/>
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    <alternative_protein protein="sp|Q50L41|PA24F_MOUSE"/>
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    <alternative_protein protein="sp|Q5NC57|F183B_MOUSE"/>
    <alternative_protein protein="sp|Q60902-2|EP15R_MOUSE"/>
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    <alternative_protein protein="sp|Q60902|EP15R_MOUSE"/>
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    <alternative_protein protein="sp|Q64455|PTPRJ_MOUSE"/>
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    <alternative_protein protein="sp|Q7TNH6-2|NPHP3_MOUSE"/>
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    <alternative_protein protein="sp|A2AWP8|ARGAL_MOUSE"/>
    <alternative_protein protein="sp|O54863|TSSK2_MOUSE"/>
    <alternative_protein protein="sp|P02469|LAMB1_MOUSE"/>
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    <alternative_protein protein="sp|P15331|PERI_MOUSE"/>
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    <alternative_protein protein="sp|Q14B80|KCNC2_MOUSE"/>
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    <alternative_protein protein="sp|Q61136|PRP4B_MOUSE"/>
    <alternative_protein protein="sp|Q61241|TSSK1_MOUSE"/>
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    <alternative_protein protein="sp|P63325|RS10_MOUSE"/>
    <alternative_protein protein="sp|Q09M05|CBPC4_MOUSE"/>
    <alternative_protein protein="sp|Q3UHQ6|DOP2_MOUSE"/>
    <alternative_protein protein="sp|Q3UK78-2|PCGF5_MOUSE"/>
    <alternative_protein protein="sp|Q3UK78|PCGF5_MOUSE"/>
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    <alternative_protein protein="sp|Q45VK7|DYHC2_MOUSE"/>
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    <alternative_protein protein="sp|Q8BNI4|DERL2_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10850.10850.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10850" start_scan="10850" end_scan="10850" precursor_neutral_mass="1546.814182" assumed_charge="2" index="1576" retention_time_sec="2336.1">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10857.10857.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10857" start_scan="10857" end_scan="10857" precursor_neutral_mass="1774.826634" assumed_charge="2" index="1577" retention_time_sec="2337.6">
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    <search_score name="sprank" value="2"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.10860.10860.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=10860" start_scan="10860" end_scan="10860" precursor_neutral_mass="758.432224" assumed_charge="2" index="1578" retention_time_sec="2338.2">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.12180.12180.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=12180" start_scan="12180" end_scan="12180" precursor_neutral_mass="1908.891647" assumed_charge="2" index="2040" retention_time_sec="2594.8">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.12181.12181.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=12181" start_scan="12181" end_scan="12181" precursor_neutral_mass="634.368382" assumed_charge="2" index="2041" retention_time_sec="2595.0">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.12183.12183.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=12183" start_scan="12183" end_scan="12183" precursor_neutral_mass="815.511387" assumed_charge="2" index="2042" retention_time_sec="2595.3">
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    <search_score name="spscore" value="287.7"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.12348.12348.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=12348" start_scan="12348" end_scan="12348" precursor_neutral_mass="676.390415" assumed_charge="2" index="2092" retention_time_sec="2628.1">
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    <alternative_protein protein="sp|P04247|MYG_MOUSE"/>
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    <alternative_protein protein="sp|P32037|GTR3_MOUSE"/>
    <alternative_protein protein="sp|P54279|PMS2_MOUSE"/>
    <alternative_protein protein="sp|P68082|MYG_HORSE"/>
    <alternative_protein protein="sp|P70398|USP9X_MOUSE"/>
    <alternative_protein protein="sp|Q3TCH7|CUL4A_MOUSE"/>
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    <alternative_protein protein="sp|Q3US41|ESRP1_MOUSE"/>
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    <alternative_protein protein="sp|P54728|RD23B_MOUSE"/>
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    <alternative_protein protein="sp|P48540-2|GDNF_MOUSE"/>
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    <alternative_protein protein="sp|P48540|GDNF_MOUSE"/>
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    <alternative_protein protein="sp|Q64249|NR6A1_MOUSE"/>
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    <alternative_protein protein="sp|Q6ZPQ6|PITM2_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q14BV6|YDJC_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q60936|COQ8A_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q69ZS0-3|PZRN3_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.12351.12351.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=12351" start_scan="12351" end_scan="12351" precursor_neutral_mass="1483.679173" assumed_charge="2" index="2093" retention_time_sec="2628.7">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.12352.12352.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=12352" start_scan="12352" end_scan="12352" precursor_neutral_mass="1870.920004" assumed_charge="3" index="2094" retention_time_sec="2628.9">
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   <search_hit hit_rank="2" peptide="DLLKF" peptide_prev_aa="R" peptide_next_aa="K" protein="sp|B2RW38|CFA58_MOUSE" num_tot_proteins="28" num_matched_ions="5" tot_num_ions="8" calc_neutral_pep_mass="634.369013" massdiff="-0.000631" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="28838">
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    <alternative_protein protein="sp|Q3V0L5|LRC43_MOUSE"/>
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    <alternative_protein protein="sp|Q62446|FKBP3_MOUSE"/>
    <alternative_protein protein="sp|Q6NVD0|FREM2_MOUSE"/>
    <alternative_protein protein="sp|Q6ZWQ0|SYNE2_MOUSE"/>
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    <alternative_protein protein="sp|Q7TN22|TXD16_MOUSE"/>
    <alternative_protein protein="DECOY_sp|G5E8F4|FPGT_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P54276|MSH6_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|P97772|GRM1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6PB90|PCDBE_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6ZPT1|KLHL9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q7TSI3|PP6R1_MOUSE"/>
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    <alternative_protein protein="sp|Q60949|TBCD1_MOUSE"/>
    <alternative_protein protein="sp|Q61967|ZFP90_MOUSE"/>
    <alternative_protein protein="sp|Q80W31|ZN569_MOUSE"/>
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    <alternative_protein protein="sp|Q8BYJ6|TBCD4_MOUSE"/>
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    <alternative_protein protein="sp|Q8C9J3|SPEF2_MOUSE"/>
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    <alternative_protein protein="sp|P11103|PARP1_MOUSE"/>
    <alternative_protein protein="sp|P29533-2|VCAM1_MOUSE"/>
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    <alternative_protein protein="sp|P98078|DAB2_MOUSE"/>
    <alternative_protein protein="sp|Q6NZQ0|CF119_MOUSE"/>
    <alternative_protein protein="sp|Q6ZQ08-2|CNOT1_MOUSE"/>
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    <alternative_protein protein="sp|Q6ZQ08-4|CNOT1_MOUSE"/>
    <alternative_protein protein="sp|Q6ZQ08|CNOT1_MOUSE"/>
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    <alternative_protein protein="sp|Q80TF4-2|KLH13_MOUSE"/>
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   <search_hit hit_rank="5" peptide="VELFK" peptide_prev_aa="L" peptide_next_aa="S" protein="sp|P35456-2|UPAR_MOUSE" num_tot_proteins="41" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="634.369013" massdiff="-0.000631" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="28838">
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    <alternative_protein protein="sp|Q62086|PON2_MOUSE"/>
    <alternative_protein protein="sp|Q62087|PON3_MOUSE"/>
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    <alternative_protein protein="sp|Q66X03|NLR9A_MOUSE"/>
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    <alternative_protein protein="sp|Q8C854-2|MYEF2_MOUSE"/>
    <alternative_protein protein="sp|Q8C854-3|MYEF2_MOUSE"/>
    <alternative_protein protein="sp|Q8C854|MYEF2_MOUSE"/>
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    <alternative_protein protein="sp|Q920G9|GMCL1_MOUSE"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.13046.13046.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=13046" start_scan="13046" end_scan="13046" precursor_neutral_mass="906.514561" assumed_charge="2" index="2355" retention_time_sec="2762.0">
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    <alternative_protein protein="sp|P63101|1433Z_MOUSE"/>
    <alternative_protein protein="sp|P68254-2|1433T_MOUSE"/>
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    <alternative_protein protein="sp|P68510|1433F_MOUSE"/>
    <alternative_protein protein="sp|Q9CQV8-2|1433B_MOUSE"/>
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    <search_score name="sprank" value="3"/>
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   <search_hit hit_rank="3" peptide="GLGLSKAYV" peptide_prev_aa="K" peptide_next_aa="G" protein="sp|Q8BTM8|FLNA_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="16" calc_neutral_pep_mass="906.517468" massdiff="-0.002907" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="20724">
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    <alternative_protein protein="DECOY_sp|Q3TVP5-2|OTULL_MOUSE"/>
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   <search_hit hit_rank="5" peptide="GGIIKEYK" peptide_prev_aa="L" peptide_next_aa="Y" protein="DECOY_sp|P52792-2|HXK4_MOUSE" num_tot_proteins="2" num_matched_ions="7" tot_num_ions="14" calc_neutral_pep_mass="906.517468" massdiff="-0.002907" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="20724">
    <alternative_protein protein="DECOY_sp|P52792-2|HXK4_MOUSE"/>
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    <search_score name="spscore" value="185.6"/>
    <search_score name="sprank" value="2"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.13047.13047.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=13047" start_scan="13047" end_scan="13047" precursor_neutral_mass="1799.900351" assumed_charge="3" index="2356" retention_time_sec="2762.2">
  <search_result>
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    <search_score name="deltacn" value="0.238"/>
    <search_score name="spscore" value="63.6"/>
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   <search_hit hit_rank="2" peptide="LSVSQSMLYLEQFQK" peptide_prev_aa="R" peptide_next_aa="D" protein="DECOY_sp|Q5SWY7|FA83G_MOUSE" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="56" calc_neutral_pep_mass="1799.912772" massdiff="-0.012421" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="37738">
    <alternative_protein protein="DECOY_sp|Q5SWY7|FA83G_MOUSE"/>
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    <search_score name="spscore" value="34.2"/>
    <search_score name="sprank" value="3"/>
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   <search_hit hit_rank="3" peptide="ISAEPPENEQVLTADGK" peptide_prev_aa="N" peptide_next_aa="N" protein="DECOY_sp|P97399|DSPP_MOUSE" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="64" calc_neutral_pep_mass="1796.879223" massdiff="3.021128" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="37738">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.13050.13050.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=13050" start_scan="13050" end_scan="13050" precursor_neutral_mass="1054.499045" assumed_charge="3" index="2357" retention_time_sec="2762.8">
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   <search_hit hit_rank="5" peptide="MTFSRVMSP" peptide_prev_aa="R" peptide_next_aa="S" protein="DECOY_sp|Q8BUR4|DOCK1_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="32" calc_neutral_pep_mass="1054.493972" massdiff="0.005072" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="23728">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.13342.13342.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=13342" start_scan="13342" end_scan="13342" precursor_neutral_mass="1495.867453" assumed_charge="3" index="2480" retention_time_sec="2817.8">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.13665.13665.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=13665" start_scan="13665" end_scan="13665" precursor_neutral_mass="885.537205" assumed_charge="2" index="2599" retention_time_sec="2879.6">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.13672.13672.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=13672" start_scan="13672" end_scan="13672" precursor_neutral_mass="713.480503" assumed_charge="2" index="2600" retention_time_sec="2881.1">
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    <alternative_protein protein="DECOY_sp|Q8R3D1|TBC13_MOUSE"/>
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    <alternative_protein protein="sp|Q60597-4|ODO1_MOUSE"/>
    <alternative_protein protein="sp|Q60597|ODO1_MOUSE"/>
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    <alternative_protein protein="sp|Q9JMK0|B4GT5_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|P11714|CP2D9_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P24456|CP2DA_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q8C9M2|CCD15_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.14937.14937.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=14937" start_scan="14937" end_scan="14937" precursor_neutral_mass="952.595982" assumed_charge="2" index="3055" retention_time_sec="3126.4">
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    <alternative_protein protein="sp|Q64524|H2B2E_MOUSE"/>
    <alternative_protein protein="sp|Q64525|H2B2B_MOUSE"/>
    <alternative_protein protein="sp|Q6ZWY9|H2B1C_MOUSE"/>
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    <alternative_protein protein="sp|Q8CGP2-2|H2B1P_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24476.24476.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24476" start_scan="24476" end_scan="24476" precursor_neutral_mass="2703.608894" assumed_charge="4" index="6356" retention_time_sec="5002.5">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24483.24483.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24483" start_scan="24483" end_scan="24483" precursor_neutral_mass="2747.634494" assumed_charge="4" index="6361" retention_time_sec="5003.6">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24484.24484.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24484" start_scan="24484" end_scan="24484" precursor_neutral_mass="2808.692118" assumed_charge="5" index="6362" retention_time_sec="5003.7">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24487.24487.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24487" start_scan="24487" end_scan="24487" precursor_neutral_mass="2782.694039" assumed_charge="4" index="6365" retention_time_sec="5004.2">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24526.24526.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24526" start_scan="24526" end_scan="24526" precursor_neutral_mass="3056.824580" assumed_charge="5" index="6396" retention_time_sec="5010.4">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24528.24528.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24528" start_scan="24528" end_scan="24528" precursor_neutral_mass="3116.874118" assumed_charge="5" index="6398" retention_time_sec="5010.7">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24529.24529.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24529" start_scan="24529" end_scan="24529" precursor_neutral_mass="3133.902618" assumed_charge="5" index="6399" retention_time_sec="5010.9">
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    <alternative_protein protein="DECOY_sp|Q9R1V6-4|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-5|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-6|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-7|ADA22_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q9R1V6-8|ADA22_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q9R1V6|ADA22_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24530.24530.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24530" start_scan="24530" end_scan="24530" precursor_neutral_mass="2985.799996" assumed_charge="4" index="6400" retention_time_sec="5011.0">
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    <alternative_protein protein="DECOY_sp|Q9JJV9|SCN5A_MOUSE"/>
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     <mod_aminoacid_mass position="25" mass="160.030649" static="57.021464"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24535.24535.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24535" start_scan="24535" end_scan="24535" precursor_neutral_mass="3143.873618" assumed_charge="5" index="6404" retention_time_sec="5011.8">
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    <search_score name="expect" value="4.06E+01"/>
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   <search_hit hit_rank="5" peptide="MRLAGPLRIVALIIIMGLTWILVTILLGGPGVGL" peptide_prev_aa="-" peptide_next_aa="P" protein="sp|Q9D8T0|FAM3A_MOUSE" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="198" calc_neutral_pep_mass="3539.159102" massdiff="0.029674" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="136">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24586.24586.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24586" start_scan="24586" end_scan="24586" precursor_neutral_mass="3515.104914" assumed_charge="5" index="6450" retention_time_sec="5019.3">
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   </search_hit>
   <search_hit hit_rank="2" peptide="SVVRVLGYEGRAEPSLLLLLFLLLLSGLPHLK" peptide_prev_aa="S" peptide_next_aa="N" protein="DECOY_sp|A2A6C4-2|SPP2C_MOUSE" num_tot_proteins="2" num_matched_ions="5" tot_num_ions="186" calc_neutral_pep_mass="3515.100719" massdiff="0.004195" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="312">
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    <alternative_protein protein="DECOY_sp|A2A6C4|SPP2C_MOUSE"/>
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   <search_hit hit_rank="3" peptide="ATKLLLHVSYLSLIAVTLLMIIFLIIGTNAMK" peptide_prev_aa="A" peptide_next_aa="E" protein="DECOY_sp|Q8R1S9|S38A4_MOUSE" num_tot_proteins="1" num_matched_ions="8" tot_num_ions="186" calc_neutral_pep_mass="3513.084600" massdiff="2.020314" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="312">
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    <search_score name="spscore" value="5.3"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="1.90E+01"/>
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   <search_hit hit_rank="4" peptide="RPKFLAWGEPVVLSLLLLLCLVLGLALAALGLS" peptide_prev_aa="R" peptide_next_aa="V" protein="sp|Q925D8|TS1R3_MOUSE" num_tot_proteins="1" num_matched_ions="7" tot_num_ions="192" calc_neutral_pep_mass="3515.108112" massdiff="-0.003198" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="312">
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   <search_hit hit_rank="5" peptide="LNVIVIASLVAQPLSEFLFGTALIVLLIMLSAK" peptide_prev_aa="L" peptide_next_aa="G" protein="DECOY_sp|Q99NH7|S26A5_MOUSE" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="192" calc_neutral_pep_mass="3512.070709" massdiff="3.034205" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="312">
    <alternative_protein protein="DECOY_sp|Q99NH7|S26A5_MOUSE"/>
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    <search_score name="sprank" value="47"/>
    <search_score name="expect" value="2.31E+01"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24587.24587.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24587" start_scan="24587" end_scan="24587" precursor_neutral_mass="3523.166939" assumed_charge="4" index="6451" retention_time_sec="5019.5">
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     <mod_aminoacid_mass position="22" mass="160.030649" static="57.021464"/>
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    <search_score name="xcorr" value="0.510"/>
    <search_score name="deltacn" value="0.079"/>
    <search_score name="spscore" value="1.0"/>
    <search_score name="sprank" value="9"/>
    <search_score name="expect" value="1.40E+01"/>
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   <search_hit hit_rank="3" peptide="PGLKAVILVGLFLMVLILLLGTSMVCLIRVVR" peptide_prev_aa="T" peptide_next_aa="R" protein="sp|Q9WU03-2|SPIT2_MOUSE" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="186" calc_neutral_pep_mass="3522.135909" massdiff="1.031030" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="120">
    <alternative_protein protein="sp|Q9WU03|SPIT2_MOUSE"/>
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     <mod_aminoacid_mass position="26" mass="160.030649" static="57.021464"/>
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    <search_score name="deltacn" value="0.082"/>
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    <search_score name="sprank" value="25"/>
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   <search_hit hit_rank="4" peptide="PGLKAVILVGLFLMVLILLLGTSMVCLIRVVR" peptide_prev_aa="T" peptide_next_aa="R" protein="sp|Q9WU03-2|SPIT2_MOUSE" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="186" calc_neutral_pep_mass="3522.135909" massdiff="1.031030" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="120">
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     <mod_aminoacid_mass position="26" mass="160.030649" static="57.021464"/>
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    <search_score name="expect" value="2.67E+01"/>
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   <search_hit hit_rank="5" peptide="RLAGPLRIVALIIIMGLTWILVTILLGGPGVGLP" peptide_prev_aa="M" peptide_next_aa="R" protein="sp|Q9D8T0|FAM3A_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="198" calc_neutral_pep_mass="3521.166281" massdiff="2.000658" num_tol_term="0" num_missed_cleavages="2" num_matched_peptides="120">
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    <search_score name="deltacn" value="1.000"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24588.24588.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24588" start_scan="24588" end_scan="24588" precursor_neutral_mass="3478.138863" assumed_charge="4" index="6452" retention_time_sec="5019.6">
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    <alternative_protein protein="DECOY_sp|P27814-2|KLRBC_MOUSE"/>
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     <mod_aminoacid_mass position="26" mass="160.030649" static="57.021464"/>
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   <search_hit hit_rank="2" peptide="QKNSNLLVITVVTVGVLTVLVVVIVAVICTRR" peptide_prev_aa="P" peptide_next_aa="S" protein="sp|P70211-2|DCC_MOUSE" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="186" calc_neutral_pep_mass="3475.105152" massdiff="3.033711" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="132">
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    <search_score name="expect" value="2.55E+01"/>
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   <search_hit hit_rank="3" peptide="IASSVGPSPAVELGVGVLILVLGLLLLLFSALVVF" peptide_prev_aa="R" peptide_next_aa="F" protein="DECOY_sp|Q8R0J4-3|TM134_MOUSE" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="204" calc_neutral_pep_mass="3475.108489" massdiff="3.030374" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="132">
    <alternative_protein protein="DECOY_sp|Q8R0J4-3|TM134_MOUSE"/>
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    <search_score name="expect" value="5.72E+01"/>
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   <search_hit hit_rank="4" peptide="LALLWSLLWIGQALRIRPQLPLVVPLVPAMV" peptide_prev_aa="-" peptide_next_aa="G" protein="DECOY_sp|P32958|ROM1_MOUSE" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="180" calc_neutral_pep_mass="3475.103302" massdiff="3.035561" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="132">
    <alternative_protein protein="DECOY_sp|P32958|ROM1_MOUSE"/>
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    <search_score name="sprank" value="39"/>
    <search_score name="expect" value="1.25E+02"/>
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   <search_hit hit_rank="5" peptide="ALMLAAGLSTGALIAILLCVVILLTLIVLFAALK" peptide_prev_aa="E" peptide_next_aa="R" protein="sp|P70407|CADH9_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="198" calc_neutral_pep_mass="3478.141386" massdiff="-0.002524" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="132">
    <modification_info modified_peptide="ALMLAAGLSTGALIAILLCVVILLTLIVLFAALK">
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    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="0.1"/>
    <search_score name="sprank" value="56"/>
    <search_score name="expect" value="1.45E+02"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24590.24590.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24590" start_scan="24590" end_scan="24590" precursor_neutral_mass="3626.241694" assumed_charge="5" index="6453" retention_time_sec="5020.0">
  <search_result>
   <search_hit hit_rank="1" peptide="ALVAGASAVLPRAVMGLAALGLVLLLWRPVTVLVKA" peptide_prev_aa="R" peptide_next_aa="G" protein="sp|Q9JJI6|PIGO_MOUSE" num_tot_proteins="1" num_matched_ions="6" tot_num_ions="210" calc_neutral_pep_mass="3624.204458" massdiff="2.037236" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="100">
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    <search_score name="deltacn" value="0.094"/>
    <search_score name="spscore" value="1.1"/>
    <search_score name="sprank" value="11"/>
    <search_score name="expect" value="4.13E+00"/>
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   <search_hit hit_rank="2" peptide="RLAAFLVVTVLLIVICLLIAVLAGTSLGTPHILR" peptide_prev_aa="A" peptide_next_aa="Q" protein="DECOY_sp|P97326|CADH6_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="198" calc_neutral_pep_mass="3625.224874" massdiff="1.016820" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="100">
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    <search_score name="deltacn" value="0.121"/>
    <search_score name="spscore" value="0.9"/>
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   <search_hit hit_rank="3" peptide="ILGSLLVLSSIILMGLVIINLFVSAILIAFGKER" peptide_prev_aa="P" peptide_next_aa="K" protein="sp|Q2EG98-2|PK1L3_MOUSE" num_tot_proteins="5" num_matched_ions="8" tot_num_ions="198" calc_neutral_pep_mass="3625.202407" massdiff="1.039287" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="100">
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    <alternative_protein protein="sp|Q2EG98-4|PK1L3_MOUSE"/>
    <alternative_protein protein="sp|Q2EG98-8|PK1L3_MOUSE"/>
    <alternative_protein protein="sp|Q2EG98|PK1L3_MOUSE"/>
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   <search_hit hit_rank="4" peptide="KAEGSNGVPLWIIILAILFGLLLLGLLIYVLYK" peptide_prev_aa="T" peptide_next_aa="L" protein="sp|P11688|ITA5_MOUSE" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="192" calc_neutral_pep_mass="3625.203058" massdiff="1.038635" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="100">
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    <search_score name="spscore" value="1.0"/>
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    <search_score name="expect" value="2.38E+01"/>
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   <search_hit hit_rank="5" peptide="EHISTRSIAIIVPLVLLVTLVTTLVIGLVVCKR" peptide_prev_aa="S" peptide_next_aa="K" protein="sp|Q9JI18|LRP1B_MOUSE" num_tot_proteins="1" num_matched_ions="9" tot_num_ions="192" calc_neutral_pep_mass="3625.209617" massdiff="1.032076" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="100">
    <modification_info modified_peptide="EHISTRSIAIIVPLVLLVTLVTTLVIGLVVCKR">
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    <search_score name="xcorr" value="0.445"/>
    <search_score name="deltacn" value="1.000"/>
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    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="3.95E+01"/>
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24591.24591.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24591" start_scan="24591" end_scan="24591" precursor_neutral_mass="1086.360691" assumed_charge="2" index="6454" retention_time_sec="5020.1">
  <search_result>
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    <modification_info modified_peptide="TCSGCSSPDN">
     <mod_aminoacid_mass position="2" mass="160.030649" static="57.021464"/>
     <mod_aminoacid_mass position="5" mass="160.030649" static="57.021464"/>
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    <search_score name="xcorr" value="0.400"/>
    <search_score name="deltacn" value="0.086"/>
    <search_score name="spscore" value="6.7"/>
    <search_score name="sprank" value="8"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24603.24603.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24603" start_scan="24603" end_scan="24603" precursor_neutral_mass="3630.156794" assumed_charge="5" index="6465" retention_time_sec="5022.0">
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   <search_hit hit_rank="3" peptide="YAVLVVTIALLLLGGGAALGVMAPLTLARDATIHLK" peptide_prev_aa="T" peptide_next_aa="R" protein="DECOY_sp|P70208-2|PLXA3_MOUSE" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="210" calc_neutral_pep_mass="3630.131018" massdiff="0.025776" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="404">
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    <alternative_protein protein="DECOY_sp|P70208|PLXA3_MOUSE"/>
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   <search_hit hit_rank="4" peptide="ILGILPTLELFGIPLNAAIPTNLFTILILRPDR" peptide_prev_aa="E" peptide_next_aa="W" protein="DECOY_sp|Q8BGA7|INT15_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="192" calc_neutral_pep_mass="3627.153148" massdiff="3.003646" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="404">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24604.24604.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24604" start_scan="24604" end_scan="24604" precursor_neutral_mass="3691.221857" assumed_charge="5" index="6466" retention_time_sec="5022.2">
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    <alternative_protein protein="DECOY_sp|Q5UKY4-8|MO2R3_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24605.24605.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24605" start_scan="24605" end_scan="24605" precursor_neutral_mass="3735.241938" assumed_charge="5" index="6467" retention_time_sec="5022.3">
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   <search_hit hit_rank="4" peptide="GLLLALLLAHLLGLVLLALQAVLAGWCLLGPACAAR" peptide_prev_aa="R" peptide_next_aa="L" protein="DECOY_sp|P56400|GP1BB_MOUSE" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="210" calc_neutral_pep_mass="3733.203093" massdiff="2.038845" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="240">
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     <mod_aminoacid_mass position="33" mass="160.030649" static="57.021464"/>
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    <search_score name="sprank" value="4"/>
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   <search_hit hit_rank="5" peptide="LVQIPIFFFTVIVMLITYTKILQALNIRIGTR" peptide_prev_aa="L" peptide_next_aa="F" protein="sp|Q8BZL4|GPR22_MOUSE" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="186" calc_neutral_pep_mass="3734.208889" massdiff="1.033049" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="240">
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    <search_score name="sprank" value="10"/>
    <search_score name="expect" value="1.14E+02"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24607.24607.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24607" start_scan="24607" end_scan="24607" precursor_neutral_mass="3785.320979" assumed_charge="5" index="6468" retention_time_sec="5022.6">
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   <search_hit hit_rank="5" peptide="SKHFCLKFLGLVTITLVVLVIVAISVLIFVVTSR" peptide_prev_aa="S" peptide_next_aa="S" protein="DECOY_sp|Q8VCP9|CLC14_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="198" calc_neutral_pep_mass="3784.282054" massdiff="1.038924" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="100">
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    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="0.4"/>
    <search_score name="sprank" value="13"/>
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  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24608.24608.4" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24608" start_scan="24608" end_scan="24608" precursor_neutral_mass="3699.270943" assumed_charge="4" index="6469" retention_time_sec="5022.8">
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   <search_hit hit_rank="3" peptide="SKIVVGAAIPIAIFLLTGLIKSIPVHLTEHISLLYSK" peptide_prev_aa="Y" peptide_next_aa="L" protein="DECOY_sp|P21129|P3_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="216" calc_neutral_pep_mass="3954.368955" massdiff="1.018247" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="156">
    <alternative_protein protein="DECOY_sp|P21129|P3_MOUSE"/>
    <search_score name="xcorr" value="0.398"/>
    <search_score name="deltacn" value="0.012"/>
    <search_score name="spscore" value="0.5"/>
    <search_score name="sprank" value="7"/>
    <search_score name="expect" value="4.15E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="FRPAGRLISPPLLLSVVLNILLSLAMHIVGFILVQK" peptide_prev_aa="P" peptide_next_aa="Q" protein="sp|Q5XF90-2|AT134_MOUSE" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="210" calc_neutral_pep_mass="3953.378399" massdiff="2.008802" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="156">
    <alternative_protein protein="sp|Q5XF90-3|AT134_MOUSE"/>
    <alternative_protein protein="sp|Q5XF90|AT134_MOUSE"/>
    <modification_info modified_peptide="FRPAGRLISPPLLLSVVLNILLSLAM[147]HIVGFILVQK">
     <mod_aminoacid_mass position="26" mass="147.035385" variable="15.994900" source="param"/>
    </modification_info>
    <search_score name="xcorr" value="0.393"/>
    <search_score name="deltacn" value="0.018"/>
    <search_score name="spscore" value="1.0"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="4.39E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="LSTALSGLLLGFYRGWKLTLVILAVSPLIGIGAAVIGLS" peptide_prev_aa="R" peptide_next_aa="V" protein="sp|Q9QY30|ABCBB_MOUSE" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="228" calc_neutral_pep_mass="3952.353305" massdiff="3.033897" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="156">
    <search_score name="xcorr" value="0.386"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="0.4"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="4.78E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24633.24633.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24633" start_scan="24633" end_scan="24633" precursor_neutral_mass="4025.396662" assumed_charge="5" index="6489" retention_time_sec="5026.7">
  <search_result>
   <search_hit hit_rank="1" peptide="LLGIAGAGCLQGLSALISIVLLRALLQQPSPLKVAGTSVK" peptide_prev_aa="V" peptide_next_aa="I" protein="DECOY_sp|Q7M6Y6-2|MRO2B_MOUSE" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="234" calc_neutral_pep_mass="4025.380265" massdiff="0.016397" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="302">
    <alternative_protein protein="DECOY_sp|Q7M6Y6-2|MRO2B_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q7M6Y6|MRO2B_MOUSE"/>
    <modification_info modified_peptide="LLGIAGAGCLQGLSALISIVLLRALLQQPSPLKVAGTSVK">
     <mod_aminoacid_mass position="9" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="0.338"/>
    <search_score name="deltacn" value="0.098"/>
    <search_score name="spscore" value="1.8"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="3.42E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="HHTWLSFILLLFTSLSLVVPVSLFIIHLRLVQRK" peptide_prev_aa="H" peptide_next_aa="R" protein="DECOY_sp|Q7M715|TR117_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="198" calc_neutral_pep_mass="4025.386276" massdiff="0.010386" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="302">
    <alternative_protein protein="DECOY_sp|Q7M715|TR117_MOUSE"/>
    <search_score name="xcorr" value="0.305"/>
    <search_score name="deltacn" value="0.028"/>
    <search_score name="spscore" value="0.1"/>
    <search_score name="sprank" value="24"/>
    <search_score name="expect" value="5.55E+01"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="RICVAQPVPFVPQVLGVMIGAGVAVLVTAVLILLVVRR" peptide_prev_aa="R" peptide_next_aa="L" protein="sp|Q3TRM4-4|PLPL6_MOUSE" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="222" calc_neutral_pep_mass="4022.414482" massdiff="2.982180" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="302">
    <alternative_protein protein="sp|Q3TRM4|PLPL6_MOUSE"/>
    <modification_info modified_peptide="RICVAQPVPFVPQVLGVMIGAGVAVLVTAVLILLVVRR">
     <mod_aminoacid_mass position="3" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="0.297"/>
    <search_score name="deltacn" value="0.028"/>
    <search_score name="spscore" value="0.6"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="6.27E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="VLLALLSPLTPLAVVTLLQASNVPAVVVGKLLQAATNYR" peptide_prev_aa="M" peptide_next_aa="N" protein="sp|Q9R0Q9|MPU1_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="228" calc_neutral_pep_mass="4025.402046" massdiff="-0.005384" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="302">
    <search_score name="xcorr" value="0.288"/>
    <search_score name="deltacn" value="0.020"/>
    <search_score name="spscore" value="0.4"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="7.08E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="LVLAAVSLFDALLLLAVAKPFSAAARARANLPVGTPIHR" peptide_prev_aa="F" peptide_next_aa="L" protein="sp|O35304|VACHT_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="228" calc_neutral_pep_mass="4022.367332" massdiff="3.029330" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="302">
    <search_score name="xcorr" value="0.283"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="0.4"/>
    <search_score name="sprank" value="8"/>
    <search_score name="expect" value="7.69E+01"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24635.24635.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24635" start_scan="24635" end_scan="24635" precursor_neutral_mass="639.438389" assumed_charge="2" index="6490" retention_time_sec="5027.2">
  <search_result>
   <search_hit hit_rank="1" peptide="ILHKK" peptide_prev_aa="Q" peptide_next_aa="I" protein="sp|E9Q876|ABCAC_MOUSE" num_tot_proteins="79" num_matched_ions="4" tot_num_ions="8" calc_neutral_pep_mass="637.427531" massdiff="2.010858" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1160">
    <alternative_protein protein="sp|G3UYX5|RGS22_MOUSE"/>
    <alternative_protein protein="sp|O88676-2|MMP23_MOUSE"/>
    <alternative_protein protein="sp|O88676|MMP23_MOUSE"/>
    <alternative_protein protein="sp|P11531|DMD_MOUSE"/>
    <alternative_protein protein="sp|P43432|IL12B_MOUSE"/>
    <alternative_protein protein="sp|P97927|LAMA4_MOUSE"/>
    <alternative_protein protein="sp|Q07113|MPRI_MOUSE"/>
    <alternative_protein protein="sp|Q2EG98-2|PK1L3_MOUSE"/>
    <alternative_protein protein="sp|Q2EG98-3|PK1L3_MOUSE"/>
    <alternative_protein protein="sp|Q2EG98-4|PK1L3_MOUSE"/>
    <alternative_protein protein="sp|Q2EG98-8|PK1L3_MOUSE"/>
    <alternative_protein protein="sp|Q2EG98|PK1L3_MOUSE"/>
    <alternative_protein protein="sp|Q69ZB8-2|ZCHC2_MOUSE"/>
    <alternative_protein protein="sp|Q69ZB8|ZCHC2_MOUSE"/>
    <alternative_protein protein="sp|Q6J756|CAN11_MOUSE"/>
    <alternative_protein protein="sp|Q7TQG1|PKHA6_MOUSE"/>
    <alternative_protein protein="sp|Q80U19-2|DAAM2_MOUSE"/>
    <alternative_protein protein="sp|Q80U19|DAAM2_MOUSE"/>
    <alternative_protein protein="sp|Q8BP48|MAP11_MOUSE"/>
    <alternative_protein protein="sp|Q8VDR9|DOCK6_MOUSE"/>
    <search_score name="xcorr" value="0.547"/>
    <search_score name="deltacn" value="0.112"/>
    <search_score name="spscore" value="57.4"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="3.85E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="LHLKK" peptide_prev_aa="H" peptide_next_aa="L" protein="sp|A2A974|CP4CB_MOUSE" num_tot_proteins="65" num_matched_ions="3" tot_num_ions="8" calc_neutral_pep_mass="637.427531" massdiff="2.010858" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1160">
    <alternative_protein protein="sp|F8VPN2-2|TEX15_MOUSE"/>
    <alternative_protein protein="sp|F8VPN2|TEX15_MOUSE"/>
    <alternative_protein protein="sp|F8VQB6-2|MYO10_MOUSE"/>
    <alternative_protein protein="sp|F8VQB6|MYO10_MOUSE"/>
    <alternative_protein protein="sp|O88833|CP4AA_MOUSE"/>
    <alternative_protein protein="sp|P50538|MAD1_MOUSE"/>
    <alternative_protein protein="sp|Q04998|INHBA_MOUSE"/>
    <alternative_protein protein="sp|Q3TTE0-2|ADAM5_MOUSE"/>
    <alternative_protein protein="sp|Q3TTE0-3|ADAM5_MOUSE"/>
    <alternative_protein protein="sp|Q3TTE0-4|ADAM5_MOUSE"/>
    <alternative_protein protein="sp|Q3TTE0|ADAM5_MOUSE"/>
    <alternative_protein protein="sp|Q5NC05|TTF2_MOUSE"/>
    <alternative_protein protein="sp|Q5SPW0-2|VPS54_MOUSE"/>
    <alternative_protein protein="sp|Q5SPW0|VPS54_MOUSE"/>
    <alternative_protein protein="sp|Q69ZK6|JHD2C_MOUSE"/>
    <alternative_protein protein="sp|Q6A152|CP4X1_MOUSE"/>
    <alternative_protein protein="sp|Q6J756|CAN11_MOUSE"/>
    <alternative_protein protein="sp|Q6PZE0|MUC19_MOUSE"/>
    <alternative_protein protein="sp|Q80XD1-2|CHIO_MOUSE"/>
    <alternative_protein protein="sp|Q80XD1-3|CHIO_MOUSE"/>
    <search_score name="xcorr" value="0.486"/>
    <search_score name="deltacn" value="0.057"/>
    <search_score name="spscore" value="35.7"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="8.95E+01"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="LIKHK" peptide_prev_aa="V" peptide_next_aa="K" protein="sp|B2RXC5|ZN382_MOUSE" num_tot_proteins="56" num_matched_ions="3" tot_num_ions="8" calc_neutral_pep_mass="637.427531" massdiff="2.010858" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1160">
    <alternative_protein protein="sp|O70496|CLCN7_MOUSE"/>
    <alternative_protein protein="sp|P34022|RANG_MOUSE"/>
    <alternative_protein protein="sp|P50516-2|VATA_MOUSE"/>
    <alternative_protein protein="sp|P50516|VATA_MOUSE"/>
    <alternative_protein protein="sp|P55194|3BP1_MOUSE"/>
    <alternative_protein protein="sp|Q4QY64|ATAD5_MOUSE"/>
    <alternative_protein protein="sp|Q5IR70|CAGE1_MOUSE"/>
    <alternative_protein protein="sp|Q5PT54|NTCP5_MOUSE"/>
    <alternative_protein protein="sp|Q61625|GRID2_MOUSE"/>
    <alternative_protein protein="sp|Q62077|PLCG1_MOUSE"/>
    <alternative_protein protein="sp|Q69ZS7-2|HBS1L_MOUSE"/>
    <alternative_protein protein="sp|Q69ZS7-3|HBS1L_MOUSE"/>
    <alternative_protein protein="sp|Q69ZS7|HBS1L_MOUSE"/>
    <alternative_protein protein="sp|Q8BIQ8|ZN770_MOUSE"/>
    <alternative_protein protein="sp|Q8BPP0|ZN436_MOUSE"/>
    <alternative_protein protein="sp|Q8C3J5|DOCK2_MOUSE"/>
    <alternative_protein protein="sp|Q8CIH5|PLCG2_MOUSE"/>
    <alternative_protein protein="sp|Q8K2A6|LIPM_MOUSE"/>
    <alternative_protein protein="sp|Q8K3H5|MYO3A_MOUSE"/>
    <alternative_protein protein="sp|Q99JT2|STK26_MOUSE"/>
    <search_score name="xcorr" value="0.459"/>
    <search_score name="deltacn" value="0.008"/>
    <search_score name="spscore" value="30.1"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="1.31E+02"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="IKLHK" peptide_prev_aa="F" peptide_next_aa="M" protein="sp|A2RSQ1-2|GLBL3_MOUSE" num_tot_proteins="58" num_matched_ions="2" tot_num_ions="8" calc_neutral_pep_mass="637.427531" massdiff="2.010858" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1160">
    <alternative_protein protein="sp|A2RSQ1|GLBL3_MOUSE"/>
    <alternative_protein protein="sp|E2JF22|PIEZ1_MOUSE"/>
    <alternative_protein protein="sp|J3QPC3-2|ACTMP_MOUSE"/>
    <alternative_protein protein="sp|J3QPC3|ACTMP_MOUSE"/>
    <alternative_protein protein="sp|O89113|IER5_MOUSE"/>
    <alternative_protein protein="sp|P09803|CADH1_MOUSE"/>
    <alternative_protein protein="sp|P18181|CD48_MOUSE"/>
    <alternative_protein protein="sp|P46684|ZIC1_MOUSE"/>
    <alternative_protein protein="sp|P47802|MTX1_MOUSE"/>
    <alternative_protein protein="sp|Q11011|PSA_MOUSE"/>
    <alternative_protein protein="sp|Q3UP24|NLRC4_MOUSE"/>
    <alternative_protein protein="sp|Q60636-2|PRDM1_MOUSE"/>
    <alternative_protein protein="sp|Q60636-3|PRDM1_MOUSE"/>
    <alternative_protein protein="sp|Q60636-4|PRDM1_MOUSE"/>
    <alternative_protein protein="sp|Q60636-5|PRDM1_MOUSE"/>
    <alternative_protein protein="sp|Q60636|PRDM1_MOUSE"/>
    <alternative_protein protein="sp|Q61467|ZIC4_MOUSE"/>
    <alternative_protein protein="sp|Q62520|ZIC2_MOUSE"/>
    <alternative_protein protein="sp|Q62521-2|ZIC3_MOUSE"/>
    <alternative_protein protein="sp|Q62521|ZIC3_MOUSE"/>
    <search_score name="xcorr" value="0.455"/>
    <search_score name="deltacn" value="0.001"/>
    <search_score name="spscore" value="15.8"/>
    <search_score name="sprank" value="9"/>
    <search_score name="expect" value="1.37E+02"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="LKHIK" peptide_prev_aa="P" peptide_next_aa="T" protein="sp|A0A5F8MPU3|CTSRT_MOUSE" num_tot_proteins="98" num_matched_ions="2" tot_num_ions="8" calc_neutral_pep_mass="637.427531" massdiff="2.010858" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1160">
    <alternative_protein protein="sp|A2AUQ7|GTA1L_MOUSE"/>
    <alternative_protein protein="sp|D3YV10|CCD13_MOUSE"/>
    <alternative_protein protein="sp|G5E869-2|ZN142_MOUSE"/>
    <alternative_protein protein="sp|G5E869-3|ZN142_MOUSE"/>
    <alternative_protein protein="sp|G5E869|ZN142_MOUSE"/>
    <alternative_protein protein="sp|O08712|TR11B_MOUSE"/>
    <alternative_protein protein="sp|O35711-2|LIPB2_MOUSE"/>
    <alternative_protein protein="sp|O35711-4|LIPB2_MOUSE"/>
    <alternative_protein protein="sp|O35711|LIPB2_MOUSE"/>
    <alternative_protein protein="sp|P04441-2|HG2A_MOUSE"/>
    <alternative_protein protein="sp|P04441|HG2A_MOUSE"/>
    <alternative_protein protein="sp|P28656|NP1L1_MOUSE"/>
    <alternative_protein protein="sp|P97473|TRBP2_MOUSE"/>
    <alternative_protein protein="sp|P97789-2|XRN1_MOUSE"/>
    <alternative_protein protein="sp|P97789-3|XRN1_MOUSE"/>
    <alternative_protein protein="sp|P97789|XRN1_MOUSE"/>
    <alternative_protein protein="sp|Q3UTH8-2|ARHG9_MOUSE"/>
    <alternative_protein protein="sp|Q3UTH8-3|ARHG9_MOUSE"/>
    <alternative_protein protein="sp|Q3UTH8-4|ARHG9_MOUSE"/>
    <alternative_protein protein="sp|Q3UTH8|ARHG9_MOUSE"/>
    <search_score name="xcorr" value="0.454"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="15.8"/>
    <search_score name="sprank" value="9"/>
    <search_score name="expect" value="1.38E+02"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24636.24636.5" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24636" start_scan="24636" end_scan="24636" precursor_neutral_mass="3983.378535" assumed_charge="5" index="6491" retention_time_sec="5027.3">
  <search_result>
   <search_hit hit_rank="1" peptide="TYQKILIGVLVSFLLLFFLLLFLILIGYQCRHK" peptide_prev_aa="E" peptide_next_aa="N" protein="sp|Q61450|LRB4B_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="192" calc_neutral_pep_mass="3981.344989" massdiff="2.033546" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="216">
    <modification_info modified_peptide="TYQKILIGVLVSFLLLFFLLLFLILIGYQCRHK">
     <mod_aminoacid_mass position="30" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="0.402"/>
    <search_score name="deltacn" value="0.001"/>
    <search_score name="spscore" value="0.1"/>
    <search_score name="sprank" value="40"/>
    <search_score name="expect" value="2.55E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="LAGRLSVVIICALVCRQLDHFLPALVLLVLLVVAAR" peptide_prev_aa="S" peptide_next_aa="K" protein="DECOY_sp|P58735|S26A1_MOUSE" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="210" calc_neutral_pep_mass="3980.367532" massdiff="3.011003" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="216">
    <alternative_protein protein="DECOY_sp|P58735|S26A1_MOUSE"/>
    <modification_info modified_peptide="LAGRLSVVIICALVCRQLDHFLPALVLLVLLVVAAR">
     <mod_aminoacid_mass position="11" mass="160.030649" static="57.021464"/>
     <mod_aminoacid_mass position="15" mass="160.030649" static="57.021464"/>
    </modification_info>
    <search_score name="xcorr" value="0.402"/>
    <search_score name="deltacn" value="0.121"/>
    <search_score name="spscore" value="0.9"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="2.56E+01"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="TFLNQGDGTPILAAASLLLLLLRLRLGPPAAAAAVAAAAAK" peptide_prev_aa="C" peptide_next_aa="D" protein="DECOY_sp|Q8R5M8-2|CADM1_MOUSE" num_tot_proteins="5" num_matched_ions="2" tot_num_ions="240" calc_neutral_pep_mass="3980.330278" massdiff="3.048257" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="216">
    <alternative_protein protein="DECOY_sp|Q8R5M8-2|CADM1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R5M8-3|CADM1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R5M8-4|CADM1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R5M8-5|CADM1_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q8R5M8|CADM1_MOUSE"/>
    <search_score name="xcorr" value="0.353"/>
    <search_score name="deltacn" value="0.032"/>
    <search_score name="spscore" value="0.3"/>
    <search_score name="sprank" value="10"/>
    <search_score name="expect" value="4.58E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="LEAAEALIPLKATNVPRFLIVLTWFLLLLLGLHRE" peptide_prev_aa="R" peptide_next_aa="P" protein="DECOY_sp|Q80ZA7-2|FMR1N_MOUSE" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="204" calc_neutral_pep_mass="3982.353973" massdiff="1.024561" num_tol_term="1" num_missed_cleavages="3" num_matched_peptides="216">
    <alternative_protein protein="DECOY_sp|Q80ZA7-2|FMR1N_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q80ZA7|FMR1N_MOUSE"/>
    <search_score name="xcorr" value="0.342"/>
    <search_score name="deltacn" value="0.046"/>
    <search_score name="spscore" value="0.1"/>
    <search_score name="sprank" value="41"/>
    <search_score name="expect" value="5.24E+01"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="VLLAVLLLVIIWTLFGPSGLGEELLSLSLASLLPAPASP" peptide_prev_aa="R" peptide_next_aa="G" protein="sp|Q9Z0F0|B3GT4_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="228" calc_neutral_pep_mass="3982.341403" massdiff="1.037132" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24736.24736.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24736" start_scan="24736" end_scan="24736" precursor_neutral_mass="903.542698" assumed_charge="2" index="6508" retention_time_sec="5048.9">
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 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24738.24738.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24738" start_scan="24738" end_scan="24738" precursor_neutral_mass="770.536839" assumed_charge="2" index="6509" retention_time_sec="5049.4">
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    <alternative_protein protein="DECOY_sp|P0CG49|UBB_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P0CG50|UBC_MOUSE"/>
    <alternative_protein protein="DECOY_sp|P62979|RS27A_HUMAN"/>
    <alternative_protein protein="DECOY_sp|P62983|RS27A_MOUSE"/>
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    <alternative_protein protein="DECOY_sp|Q6P6P7-2|PARP6_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q6P6P7|PARP6_MOUSE"/>
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24744.24744.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24744" start_scan="24744" end_scan="24744" precursor_neutral_mass="3507.788229" assumed_charge="3" index="6510" retention_time_sec="5050.8">
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 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.24748.24748.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=24748" start_scan="24748" end_scan="24748" precursor_neutral_mass="1022.432224" assumed_charge="2" index="6512" retention_time_sec="5051.7">
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    <alternative_protein protein="DECOY_sp|Q5DU14-3|MYO16_MOUSE"/>
    <alternative_protein protein="DECOY_sp|Q5DU14|MYO16_MOUSE"/>
    <search_score name="xcorr" value="0.131"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="0.0"/>
    <search_score name="sprank" value="12"/>
    <search_score name="expect" value="1.80E+02"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.26344.26344.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=26344" start_scan="26344" end_scan="26344" precursor_neutral_mass="1002.682102" assumed_charge="2" index="6844" retention_time_sec="5397.9">
  <search_result>
   <search_hit hit_rank="1" peptide="VMKLILRK" peptide_prev_aa="Q" peptide_next_aa="R" protein="sp|Q99LJ6|GPX7_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="999.662692" massdiff="3.019410" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="118">
    <search_score name="xcorr" value="0.279"/>
    <search_score name="deltacn" value="0.049"/>
    <search_score name="spscore" value="3.2"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="2.06E+01"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="FLIKRVVK" peptide_prev_aa="T" peptide_next_aa="E" protein="sp|Q99J39-2|DCMC_MOUSE" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1001.674972" massdiff="1.007131" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="118">
    <alternative_protein protein="sp|Q99J39|DCMC_MOUSE"/>
    <search_score name="xcorr" value="0.265"/>
    <search_score name="deltacn" value="0.282"/>
    <search_score name="spscore" value="9.4"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="2.60E+01"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="KKLMLLVR" peptide_prev_aa="K" peptide_next_aa="E" protein="sp|Q80TC6|ZSWM5_MOUSE" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="999.662692" massdiff="3.019410" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="118">
    <alternative_protein protein="sp|Q8C7B8|ZSWM4_MOUSE"/>
    <search_score name="xcorr" value="0.190"/>
    <search_score name="deltacn" value="0.231"/>
    <search_score name="spscore" value="2.7"/>
    <search_score name="sprank" value="3"/>
    <search_score name="expect" value="9.61E+01"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="VMRILLKK" peptide_prev_aa="V" peptide_next_aa="V" protein="sp|Q9CQF4|MRES1_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="999.662692" massdiff="3.019410" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="118">
    <search_score name="xcorr" value="0.146"/>
    <search_score name="deltacn" value="0.015"/>
    <search_score name="spscore" value="1.1"/>
    <search_score name="sprank" value="5"/>
    <search_score name="expect" value="2.07E+02"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="TIATILLKK" peptide_prev_aa="T" peptide_next_aa="V" protein="sp|O88987|AKAP3_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="999.669218" massdiff="3.012885" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="118">
    <search_score name="xcorr" value="0.144"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="1.0"/>
    <search_score name="sprank" value="6"/>
    <search_score name="expect" value="2.15E+02"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 <spectrum_query spectrum="20230909_JC_Boulder_ATR_time25.26353.26353.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=26353" start_scan="26353" end_scan="26353" precursor_neutral_mass="1134.759617" assumed_charge="2" index="6845" retention_time_sec="5399.9">
  <search_result>
   <search_hit hit_rank="1" peptide="LPVKKVPVVR" peptide_prev_aa="Q" peptide_next_aa="V" protein="sp|Q61493|REV3L_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1133.764849" massdiff="0.994768" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="196">
    <search_score name="xcorr" value="0.175"/>
    <search_score name="deltacn" value="0.001"/>
    <search_score name="spscore" value="1.3"/>
    <search_score name="sprank" value="1"/>
    <search_score name="expect" value="1.29E+02"/>
   </search_hit>
   <search_hit hit_rank="2" peptide="LGHVLLLVLR" peptide_prev_aa="I" peptide_next_aa="I" protein="sp|Q91YL7-2|PG2IP_MOUSE" num_tot_proteins="2" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1131.749199" massdiff="3.010418" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="196">
    <alternative_protein protein="sp|Q91YL7|PG2IP_MOUSE"/>
    <search_score name="xcorr" value="0.175"/>
    <search_score name="deltacn" value="0.509"/>
    <search_score name="spscore" value="0.0"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="1.30E+02"/>
   </search_hit>
   <search_hit hit_rank="3" peptide="PLLVPLRAVR" peptide_prev_aa="L" peptide_next_aa="A" protein="DECOY_sp|Q9JL61|RFX5_MOUSE" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1132.744448" massdiff="2.015169" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="196">
    <alternative_protein protein="DECOY_sp|Q9JL61|RFX5_MOUSE"/>
    <search_score name="xcorr" value="0.086"/>
    <search_score name="deltacn" value="0.003"/>
    <search_score name="spscore" value="0.0"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="8.49E+02"/>
   </search_hit>
   <search_hit hit_rank="4" peptide="ALLRLAPVLLG" peptide_prev_aa="R" peptide_next_aa="N" protein="sp|P53995|APC1_MOUSE" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1134.748865" massdiff="0.010752" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="196">
    <search_score name="xcorr" value="0.085"/>
    <search_score name="deltacn" value="0.003"/>
    <search_score name="spscore" value="1.2"/>
    <search_score name="sprank" value="2"/>
    <search_score name="expect" value="8.54E+02"/>
   </search_hit>
   <search_hit hit_rank="5" peptide="PLLKVSIIPR" peptide_prev_aa="D" peptide_next_aa="G" protein="sp|Q8JZQ2|AFG32_MOUSE" num_tot_proteins="2" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1134.748865" massdiff="0.010752" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="196">
    <alternative_protein protein="sp|Q920A7|AFG31_MOUSE"/>
    <search_score name="xcorr" value="0.085"/>
    <search_score name="deltacn" value="1.000"/>
    <search_score name="spscore" value="0.0"/>
    <search_score name="sprank" value="4"/>
    <search_score name="expect" value="8.58E+02"/>
   </search_hit>
  </search_result>
 </spectrum_query>
 </msms_run_summary>
</msms_pipeline_analysis>
