Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Fuc(O)	O(1)Fuc(1)HexNAc(1)(N)	O(2)Fuc(1)HexNAc(1)(N)	oFuc(1)HexNAc(1)	OFuc(1)HexNAc(1)(N)	Oxidation (M)	Missed cleavages	Identification type A1	Identification type B1	Experiment A1	Experiment B1	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Intensity	Intensity A1	Intensity B1	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Fuc(O) site IDs	O(1)Fuc(1)HexNAc(1)(N) site IDs	O(2)Fuc(1)HexNAc(1)(N) site IDs	oFuc(1)HexNAc(1) site IDs	OFuc(1)HexNAc(1)(N) site IDs	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AACAVKPQEVQMVNGTITNPINGK	Oxidation (M);oFuc(1)HexNAc(1)	2931.4318	0.43177216	90	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	1	0	1	1	By MS/MS	By MS/MS	2	1	43.644	43.582	3	1.1887E-06	10476	GX_QE_U300_20240930_Hela_A1	63.491	46.21			33197000	25702000	7494200	0	90	0	0;1;2	0;1;2	1				34;35;36		50	3	
AACAVKPQEVQMVNGTITNPINGK	oFuc(1)HexNAc(1)	2915.4369	0.43685754	90	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	1	0	0	1	By MS/MS		2		47.795	47.795	3	0.00036205	11909	GX_QE_U300_20240930_Hela_A1	51.645	38.053			12710000	12710000	0	1	90	0	3;4	3;4;5	5				34;35;36			3	
AAFTECCQAADK	Unmodified	1370.5595	0.55948529	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.414	29.324	2	3.4868E-250	5407	GX_QE_U300_20240930_Hela_A1	227.94	207.04		+	190330000	123090000	67240000	2	4	1	5;6	6;7	6							2	
AAFVSEQQQKLSR	Unmodified	1490.7841	0.78414057	129	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	2	30.846	30.721	2;3	1.0336E-42	5907	GX_QE_U300_20240930_Hela_B1	139.89	110.54			52444000	7375000	45069000	3	129	2	7;8;9	8;9;10	9							3	
AAQRNSR	oFuc(1)HexNAc(1)	1177.5687	0.56872807	222	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	0	1	0	0	1		By MS/MS		1	33.549	33.36	2	0.017186	6840	GX_QE_U300_20240930_Hela_B1	62.842	29.045			12657000	0	12657000	4	222	3	10	11	11				78			1	
AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK	Unmodified	3668.7123	0.71233221	272	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		28.413	28.413	4	1.5473E-23	5101	GX_QE_U300_20240930_Hela_A1	63.485	47.344			7699100	7699100	0	5	272	4	11	12	12							1	
AAVPSGASTGIYEALELR	Unmodified	1803.9367	0.93667805	59	P06733;P13929;P09104	ENO1;ENO3;ENO2	Alpha-enolase;Beta-enolase;Gamma-enolase	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	60.933	60.856	2	5.8371E-06	16234	GX_QE_U300_20240930_Hela_B1	89.466	60.119			11221000	3342600	7878500	6	59	5	12;13	13;14	14							2	
ACQMLLRGTFYQGYR	Oxidation (M)	1878.8869	0.88690786	106	P15498	VAV1	Proto-oncogene vav	yes	yes	0	0	0	0	0	0	1	1	By MS/MS		1		47.063	47.063	2	0.0039011	11606	GX_QE_U300_20240930_Hela_A1	51.092	11.175			41816000	41816000	0	7	106	6	14	15	15						64	1	
ADLINNLGTIAK	Unmodified	1241.698	0.69795133	75;70	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	52.449	52.352	2	0.0035063	13355	GX_QE_U300_20240930_Hela_B1	77.744	48.077			40811000	17388000	23423000	8	70;75	7	15;16	16	16							1	
AEDKEWMPVTK	Oxidation (M)	1348.6333	0.63330216	108	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	30.287	30.103	3	0.010251	5701	GX_QE_U300_20240930_Hela_B1	52.576	37.199			7536700	0	7536700	9	108	8	17	17	17						66	1	
AEFAEVSK	Unmodified	879.4338	0.43379771	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	30.31	30.218	2	0.01429	5682	GX_QE_U300_20240930_Hela_B1	71.379	25.985		+	117240000	83093000	34151000	10	4	9	18;19	18	18							1	
AEPPKAPEQEQAAPGPAAGGEAPK	Unmodified	2297.1288	0.12878893	200	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	28.577	28.492	3	5.1022E-05	5130	GX_QE_U300_20240930_Hela_A1	42.454	19.447			17586000	6970100	10616000	11	200	10	20;21	19;20	19							2	
AFGPGLQGGSAGSPAR	Unmodified	1428.711	0.71097563	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	36.608	36.515	2	9.7729E-06	8005	GX_QE_U300_20240930_Hela_A1	94.191	74.876			0	0	0	12	117	11	22;23	21;22	21							2	
AFNSTLPTMAQMEK	2 Oxidation (M);oFuc(1)HexNAc(1)	1975.8755	0.87545928	109	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	1	0	2	0	By MS/MS	By MS/MS	1	1	43.451	43.358	2	0.0019081	10351	GX_QE_U300_20240930_Hela_A1	72.175	54.116			39436000	22908000	16528000	13	109	12	24;25	23	23				50		67;68	1	
AFNSTLPTMAQMEK	Oxidation (M);oFuc(1)HexNAc(1)	1959.8805	0.88054466	109	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	1	0	1	0	By MS/MS	By MS/MS	5	3	48.043	47.971	2	0.00064545	11902	GX_QE_U300_20240930_Hela_A1	74.296	53.045			192270000	112940000	79330000	14	109	12	26;27;28;29;30;31;32;33	24;25;26;27;28;29;30;31;32	27				50		67;68	9	
AGFAGDDAPR	Unmodified	975.44101	0.44100836	181;195	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P68133;P68032;P63267;P62736	ACTG1;ACTB;POTEE;POTEF;POTEI;POTEJ;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.364	29.274	2	1.7317E-125	5390	GX_QE_U300_20240930_Hela_A1	190.26	160.69			102810000	56442000	46372000	15	181;195	13	34;35	33	33							1	
AGLQFPVGR	Unmodified	943.52395	0.52395013	81	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;Q93077;Q7L7L0;P04908;Q71UI9;P0C0S5;Q96QV6;P16104;Q8IUE6	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFV;H2AFZ;HIST1H2AA;H2AFX;HIST2H2AB	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-A;Histone H2AX;Histone H2A type 2-B	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	46.668	46.573	2	0.0031911	11440	GX_QE_U300_20240930_Hela_B1	95.352	37.793			68896000	34527000	34369000	16	81	14	36;37	34;35;36	36							3	
AGLQVYNK	Unmodified	891.48142	0.48141661	96	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	30.828	30.734	2	6.8447E-17	5887	GX_QE_U300_20240930_Hela_B1	128.48	88.216			42735000	17207000	25528000	17	96	15	38;39	37;38	38							2	
AGLQVYNKCWK	Unmodified	1365.6863	0.68634078	96	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	37.646	37.554	2;3	1.0472E-20	8316	GX_QE_U300_20240930_Hela_B1	128	94.48			145400000	53550000	91849000	18	96	16	40;41;42;43	39;40	39							2	
AGQPHSSSDAAQAPAEQPHSSSDAAQAPCPR	Unmodified	3112.3653	0.36530059	136	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		25.202	25.202	4	0.00071179	4006	GX_QE_U300_20240930_Hela_A1	37.344	28.061			8130000	8130000	0	19	136	17	44	41	41							1	
AHSSMVGVNLPQK	Oxidation (M)	1382.6976	0.69763375	33	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	0	0	1	0	By matching	By MS/MS	1	1	29.099	29.01	3	2.3528E-06	5271	GX_QE_U300_20240930_Hela_B1	93.614	80.432			13139000	6688800	6450400	20	33	18	45;46	42	42						15	1	
AIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSK	Unmodified	3953.0098	0.009849575	46	P02787	TF	Serotransferrin	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	80.984	80.812	4	7.5901E-06	23176	GX_QE_U300_20240930_Hela_B1	35.973	26.09			13563000	0	13563000	21	46	19	47	43	43							1	
AISKMCLYTCPR	Oxidation (M)	1514.7044	0.70437539	1	A2RU30	TESPA1	Protein TESPA1	yes	yes	0	0	0	0	0	0	1	1	By MS/MS		1		63.78	63.78	2	0.021547	17257	GX_QE_U300_20240930_Hela_A1	44.203	11.363			2335800	2335800	0	22	1	20	48	44	44						0	0	
AKFEELNMDLFR	Oxidation (M)	1527.7392	0.73916421	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	50.908	50.715	2	0.0064505	12838	GX_QE_U300_20240930_Hela_B1	41.399	23.239			0	0	0	23	87	21	49	45	45						44	1	
AKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR	Oxidation (M)	3789.6144	0.61437681	165	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	0	0	1	1	By MS/MS		1		36.401	36.401	3	3.6618E-12	7925	GX_QE_U300_20240930_Hela_A1	53.091	41.791			10917000	10917000	0	24	165	22	50	46	46						84	1	
AKSETVLTCATGR	Unmodified	1392.7031	0.70311306	129	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	29.286	29.107	3	1.4486E-08	5320	GX_QE_U300_20240930_Hela_B1	82.202	58.047			8170100	0	8170100	25	129	23	51	47	47							1	
ALANSLACQGK	Unmodified	1131.5706	0.57064232	49	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	31.011	30.917	2	0.00011796	6011	GX_QE_U300_20240930_Hela_A1	95.502	55.233			6172300	2604700	3567600	26	49	24	52;53	48;49	48							2	
ALEEANTELEVK	Unmodified	1344.6773	0.67727546	10	CON__Q04695;CON__Q9QWL7;Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		38.688	38.688	2	0.020423	8756	GX_QE_U300_20240930_Hela_A1	51.436	31.649		+	0	0	0	27	10	25	54	50	50							1	
ALMLQGVDLLADAVAVTMGPK	Unmodified	2112.1323	0.13228309	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	93.012	92.907	3	0.0022053	27265	GX_QE_U300_20240930_Hela_B1	35.389	26.889			13868000	0	13868000	28	86	26	55	51	51							1	
ALQATVGNSYK	Unmodified	1150.5982	0.59823728	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	31.033	30.939	2	3.6097E-28	5994	GX_QE_U300_20240930_Hela_A1	131.5	97.953			24936000	6142000	18794000	29	89	27	56;57	52;53	52							2	
ALQATVGNSYKCNAEEHVR	Unmodified	2146.0225	0.022549716	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	30.815	30.721	3;4	0	5926	GX_QE_U300_20240930_Hela_B1	236.02	209.31			164960000	29419000	135540000	30	89	28	58;59;60;61	54;55;56	55							3	
ALSMNSGNAK	Oxidation (M);O(2)Fuc(1)HexNAc(1)(N)	1382.6348	0.63475872	228	Q2Y0W8	SLC4A8	Electroneutral sodium bicarbonate exchanger 1	yes	yes	0	0	0	1	0	0	1	0		By MS/MS		1	72.264	72.156	2	0.015907	20173	GX_QE_U300_20240930_Hela_B1	45.972	11.148			42323000	0	42323000	31	228	29	62	57	57			2			119	1	
ALSNISLR	oFuc(1)HexNAc(1)	1248.6561	0.65614609	18	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	2	46.008	45.913	2	0.013135	11149	GX_QE_U300_20240930_Hela_B1	56.013	23.173			50497000	22553000	27943000	32	18	30	63;64;65	58;59;60	59				2			3	
ALSTGEKGFGYK	Unmodified	1256.6401	0.6401021	191	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	31.808	31.619	3	1.4226E-07	6222	GX_QE_U300_20240930_Hela_B1	87.001	59.357			24037000	0	24037000	33	191	31	66	61	61							1	
ALVLIAFAQYLQQCPFEDHVK	Unmodified	2489.2777	0.27770177	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	5	80.855	80.742	2;3;4	7.531E-256	23117	GX_QE_U300_20240930_Hela_B1	224.19	224.19		+	378130000	29273000	348860000	34	4	32	67;68;69;70;71;72;73	62;63;64;65;66;67;68;69;70	65							9	
AMGIMNSFVNDIFER	2 Oxidation (M)	1774.8018	0.80184082	25;64	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	0	0	0	0	0	2	0	By MS/MS	By MS/MS	1	1	63.836	63.836	2	2.3924000000000002E-34	17372	GX_QE_U300_20240930_Hela_B1	132.76	105.65			7378600	7378600	0	35	25;64	33	74;75	71;72	72						13;14	2	
AMGIMNSFVNDIFER	Oxidation (M)	1758.8069	0.8069262	25;64	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	0	0	0	0	0	1	0		By MS/MS		1	73.443	73.335	2	0.0013975	20539	GX_QE_U300_20240930_Hela_B1	75.819	52.391			4951000	0	4951000	36	25;64	33	76	73;74	73						13;14	2	
AMGIMNSFVNDIFER	Unmodified	1742.812	0.81201158	25;64	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	0	0	0	0	0	0	0		By MS/MS		1	77.538	77.407	2	7.207599999999999E-22	21993	GX_QE_U300_20240930_Hela_B1	118.28	75.032			12102000	0	12102000	37	25;64	33	77	75	75							1	
ANTTQPGIVEGGQVLK	oFuc(1)HexNAc(1)	1987.011	0.010965202	63	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		44.496	44.496	2	0.0011425	10767	GX_QE_U300_20240930_Hela_A1	53.528	40.951			7788600	7788600	0	38	63	34	78	76	76				14			1	
AQAAAPASVPAQAPK	Unmodified	1376.7412	0.74121312	161	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		29.007	29.007	2	0.0071033	5312	GX_QE_U300_20240930_Hela_A1	79.82	62.795			0	0	0	39	161	35	79	77	77							1	
AQIFANTVDNAR	Unmodified	1318.663	0.6629628	58	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	39.502	39.32	2	6.2482E-15	8915	GX_QE_U300_20240930_Hela_B1	113.93	85.414			0	0	0	40	58	36	80	78	78							1	
AQYEDIANR	Unmodified	1078.5043	0.5043369	6;11;12	P05787;CON__P05787;O95678;CON__O95678;CON__Q5XQN5;CON__Q922U2;CON__Q8BGZ7	KRT8;KRT75	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	31.379	31.285	2	8.1572E-07	6092	GX_QE_U300_20240930_Hela_A1	109.01	92.859		+	19523000	8294500	11228000	41	6;11;12	37	81;82	79;80	79							2	
ASFNHFDKDHGGALGPEEFK	Unmodified	2202.013	0.013030887	22	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	39.416	39.234	4	0.00052853	8898	GX_QE_U300_20240930_Hela_B1	54.658	37.169			15539000	0	15539000	42	22	38	83	81	81							1	
ASGNYATVISHNPETK	Unmodified	1687.8166	0.81656291	190	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		32.883	32.883	3	0.00027592	6689	GX_QE_U300_20240930_Hela_A1	63.631	49.212			3676100	3676100	0	43	190	39	84	82	82							1	
ASIHEAWTDGK	Unmodified	1213.5728	0.57275081	22	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	32.321	32.131	3	0.0057119	6411	GX_QE_U300_20240930_Hela_B1	47.189	10.886			0	0	0	44	22	40	85	83	83							1	
ASLEAAIADAEQR	Unmodified	1343.6681	0.66810776	6	P05787;CON__P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	52.029	51.836	2	2.9227E-15	13191	GX_QE_U300_20240930_Hela_B1	112.15	81.583		+	0	0	0	45	6	41	86	84	84							1	
ATAVMPDGQFK	Oxidation (M)	1179.5594	0.55940893	208	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		31.218	31.218	2	0.00030859	6086	GX_QE_U300_20240930_Hela_A1	90.15	55.343			10204000	10204000	0	46	208	42	87	85	85						115	1	
ATEEQLK	Unmodified	817.41815	0.41814765	5	CON__P02769			yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	23.305	23.258	2	0.0020416	3403	GX_QE_U300_20240930_Hela_B1	104.11	38.214		+	7168100	4933100	2235000	47	5	43	88;89	86	86							1	
ATFNPAQDKCGIR	Unmodified	1476.7143	0.71434645	16	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	31.338	31.244	3	5.9898E-08	6105	GX_QE_U300_20240930_Hela_A1	91.858	76.592			17541000	9986600	7554700	48	16	44	90;91	87;88	87							2	
ATLKDQLIYNLLKEEQTPQNK	Acetyl (Protein N-term)	2528.3486	0.34861811	31	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	0	0	0	0	2		By MS/MS		1	66.752	66.626	3	2.5237E-06	18240	GX_QE_U300_20240930_Hela_B1	51.688	36.759			15461000	0	15461000	49	31	45	92	89	89							1	
ATLVCLISDFYPGAVTVAWK	Unmodified	2210.1446	0.14456233	3	P0DOY3;P0DOY2;P0CG04;B9A064	IGLC1;IGLL5	Ig lambda-1 chain C regions;Immunoglobulin lambda-like polypeptide 5	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	85.201	84.963	3	2.4129E-05	24656	GX_QE_U300_20240930_Hela_B1	58.997	49.592			11083000	0	11083000	50	3	46	93	90	90							1	
ATTASQAKAVLSAEQLR	Unmodified	1743.9479	0.94791144	168	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	39.819	39.728	3	1.546E-17	9057	GX_QE_U300_20240930_Hela_B1	111.91	82.102			50254000	6938200	43316000	51	168	47	94;95	91	91							1	
ATTASQAKAVLSAEQLRDEEVHAGLGELLR	Unmodified	3162.6633	0.66330374	168	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	57.178	56.998	4	9.8231E-12	14898	GX_QE_U300_20240930_Hela_B1	58.137	40.08			12392000	0	12392000	52	168	48	96	92	92							0	
AVFPSIVGRPR	Unmodified	1197.6982	0.6982261	181;195	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;P68133;P68032;P63267;P62736	ACTG1;ACTB;POTEE;POTEF;POTEI;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	42.635	42.543	2;3	1.9661E-06	10005	GX_QE_U300_20240930_Hela_B1	87.298	59.969			46638000	9864100	36774000	53	181;195	49	97;98;99;100	93;94	93							2	
AVFVDLEPTVIDEVR	Unmodified	1700.8985	0.89850163	197;258	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	65.342	65.277	2	1.452E-120	17794	GX_QE_U300_20240930_Hela_B1	179.6	120.93			11523000	4229400	7294000	54	197;258	50	101;102	95;96	96							2	
AVGFSSGTENPHGVKAVTR	Unmodified	1912.9755	0.97552317	229	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	29.683	29.504	4	3.9785E-07	5477	GX_QE_U300_20240930_Hela_B1	84.499	62.658			13050000	0	13050000	55	229	51	103	97	97							1	
AVKSSEHINEGETAMLVCK	Oxidation (M)	2118.0085	0.0085391359	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	2	1	30.6	30.538	3;4	2.3409E-38	5897	GX_QE_U300_20240930_Hela_B1	123.14	100.07			78347000	48542000	29805000	56	147	52	104;105;106	98;99;100	100						77	3	
AVLVDLEPGTMDSVR	Oxidation (M)	1616.808	0.80797206	198	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	yes	no	0	0	0	0	0	0	1	0		By MS/MS		1	50.006	49.814	2	0.0052124	12521	GX_QE_U300_20240930_Hela_B1	54.471	39.781			4739600	0	4739600	57	198	53	107	101	101						110	1	
AVLVNNITTGER	oFuc(1)HexNAc(1)	1661.8472	0.84719434	246	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	2	1	45.622	45.559	2	6.0155E-19	11642	GX_QE_U300_20240930_Hela_A1	119.74	88.214			51975000	26501000	25475000	58	246	54	108;109;110	102;103;104	103				88;89			3	
AVLVNNITTGER	OFuc(1)HexNAc(1)(N)	1690.8737	0.87374344	246	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	0	0	1	0	0	By MS/MS		1		49.073	49.073	2	0.013794	12284	GX_QE_U300_20240930_Hela_A1	45.257	32.704			8029400	8029400	0	59	246	54	111	105	105					14;15		1	
AVMDDFAAFVEK	Oxidation (M)	1357.6224	0.62240312	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	1	0	By MS/MS	By matching	2	1	56.401	56.34	2	2.4218E-12	14622	GX_QE_U300_20240930_Hela_A1	107.83	71.13		+	51068000	37559000	13509000	60	4	55	112;113;114	106;107	106						1	2	
AVMDDFAAFVEK	Unmodified	1341.6275	0.6274885	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	65.474	65.387	2	2.9931E-08	17905	GX_QE_U300_20240930_Hela_B1	104.52	104.52		+	104620000	26655000	77967000	61	4	55	115;116;117	108;109;110	109							3	
AWGPGLEGGVVGK	Unmodified	1225.6455	0.64552182	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	47.31	47.214	2	0.0077522	11620	GX_QE_U300_20240930_Hela_B1	65.056	49.093			22918000	10001000	12917000	62	117	56	118;119	111	111							1	
AYGENIGYSEKDRFQGR	Unmodified	1988.9341	0.93405228	55	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		2	34.619	34.431	3;4	0.00023089	7238	GX_QE_U300_20240930_Hela_B1	73.983	52.924			29103000	0	29103000	63	55	57	120;121	112;113;114	113							3	
AYHEQLSVAEITNACFEPANQMVK	Oxidation (M)	2765.2789	0.27890034	197	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	0	0	0	1	0	By MS/MS		2		52.027	52.027	3	2.6993E-14	13293	GX_QE_U300_20240930_Hela_A1	80.002	65.987			11231000	11231000	0	64	197	58	122;123	115;116	116						109	2	
CCAAADPHECYAK	Unmodified	1551.5905	0.59046784	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	24.629	24.516	3	0.0021986	3788	GX_QE_U300_20240930_Hela_B1	71.085	71.085		+	4846900	0	4846900	65	4	59	124	117	117							1	
CCTESLVNR	Unmodified	1137.4907	0.49067744	4;5	CON__P02768-1;P02768;CON__P02769	ALB	Serum albumin	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.428	29.339	2	2.8042E-121	5422	GX_QE_U300_20240930_Hela_A1	186.09	164.94		+	47357000	27339000	20017000	66	4;5	60	125;126	118;119	118							2	
DASSFLAEWQNITK	oFuc(1)HexNAc(1)	1984.9266	0.92656687	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	1	0	0	0		By MS/MS		4	75.183	75.066	2;3	3.7581E-05	21225	GX_QE_U300_20240930_Hela_B1	88.282	74.047			101540000	0	101540000	67	74	61	127;128;129;130	120;121;122;123;124	122				17			5	
DATNVGDEGGFAPNILENK	Unmodified	1959.9174	0.91739917	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	55.779	55.686	2	2.4461E-05	14512	GX_QE_U300_20240930_Hela_A1	74.133	59.975			18977000	8128600	10848000	68	59	62	131;132	125;126	125							2	
DDNPNLPR	Unmodified	939.44101	0.44100836	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.394	29.304	2	1.4418000000000001E-121	5414	GX_QE_U300_20240930_Hela_B1	192.11	161.69		+	69376000	48262000	21114000	69	4	63	133;134	127;128;129;130	130							4	
DFEDLYTPVNGSIVIVR	oFuc(1)HexNAc(1)	2312.1424	0.14237331	45	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	2	3	70.536	70.47	2	5.325E-70	19572	GX_QE_U300_20240930_Hela_B1	147.37	118.03			61014000	9996200	51018000	70	45	64	135;136;137;138;139	131;132;133;134;135	134				8			5	
DFLLKPELLR	Unmodified	1242.7336	0.73360855	13	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	59.227	59.059	2	0.007116	15613	GX_QE_U300_20240930_Hela_B1	69.423	53.221			0	0	0	71	13	65	140	136	136							1	
DFNETQLAR	oFuc(1)HexNAc(1)	1468.6682	0.66816734	260	Q9H6X2	ANTXR1	Anthrax toxin receptor 1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	44.834	44.834	2	0.0017924	10841	GX_QE_U300_20240930_Hela_A1	72.006	55.752			5882100	5882100	0	72	260	66	141;142	137;138	137				98			2	
DGQVINETSQHHDDLE	Unmodified	1835.7922	0.79219865	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	32.792	32.698	3	5.1296E-05	6599	GX_QE_U300_20240930_Hela_B1	87.148	62.213			44563000	18976000	25586000	73	77	67	143;144	139;140	140							2	
DIENLKDASSFLAEWQNITK	oFuc(1)HexNAc(1)	2697.3021	0.30212142	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	1	0	0	1		By MS/MS		2	75.957	75.836	3	0.0010073	21887	GX_QE_U300_20240930_Hela_B1	51.819	29.017			25402000	0	25402000	74	74	68	145;146	141;142	142				17			2	
DINSQQELQNITTDTR	oFuc(1)HexNAc(1)	2251.0452	0.045178456	85	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		49.526	49.526	2	2.4955E-05	12433	GX_QE_U300_20240930_Hela_A1	87.429	71.538			12721000	12721000	0	75	85	69	147	143;144	143				28;29			2	
DISTNYYASQKK	Unmodified	1416.6885	0.68850885	101	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	31.348	31.254	3	0.020209	6121	GX_QE_U300_20240930_Hela_B1	32.068	16.127			9604700	3046500	6558200	76	101	70	148;149	145	145							1	
DKLPQPVQPDPVSHCK	Unmodified	1843.9251	0.9250675	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	31.65	31.462	3	0.00639	6189	GX_QE_U300_20240930_Hela_B1	78.441	59.619			16333000	0	16333000	77	57	71	150	146	146							0	
DLGEENFK	Unmodified	950.43453	0.434526	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	37.074	36.982	2	3.7306E-06	8106	GX_QE_U300_20240930_Hela_B1	107.32	64.251		+	30326000	18128000	12199000	78	4	72	151;152	147	147							1	
DLGPTLANSTHHNVR	oFuc(1)HexNAc(1)	2006.9657	0.96574634	48	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	35.244	35.151	3	2.8114E-07	7564	GX_QE_U300_20240930_Hela_B1	93.226	60.368			26871000	10320000	16550000	79	48	73	153;154	148;149	149				9;10			2	
DLTDYLMK	Oxidation (M)	1013.4739	0.47394797	181;195	P63261;P60709;Q562R1;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTBL2;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	51.881	51.785	2	0.02089	13139	GX_QE_U300_20240930_Hela_B1	65.038	47.052			58876000	25765000	33111000	80	181;195	74	155;156	150	150						91	1	
DLYANTVLSGGTTMYPGIADR	Oxidation (M)	2230.0576	0.057597819	181	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	2	1	58.145	58.087	2;3	2.3486E-28	15327	GX_QE_U300_20240930_Hela_B1	114.31	90.323			30897000	19702000	11195000	81	181	75	157;158;159	151;152;153	153						92	3	
DNIQGITKPAIR	Unmodified	1324.7463	0.7462985	186	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	35.431	35.338	2;3	3.3225E-151	7505	GX_QE_U300_20240930_Hela_B1	193.21	173.43			270830000	103240000	167590000	82	186	76	160;161;162;163	154;155;156	156							3	
DNIQGITKPAIRR	Unmodified	1480.8474	0.84740953	186	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	0	0	0	2	By MS/MS		1		30.993	30.993	3	0.00061518	6013	GX_QE_U300_20240930_Hela_A1	54.7	47.291			0	0	0	83	186	77	164	157	157							1	
DNTNEIYSGK	Unmodified	1139.5095	0.50948185	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	30.369	30.276	2	0.007753	5755	GX_QE_U300_20240930_Hela_A1	71.349	56.198			12434000	3978700	8455200	84	57	78	165;166	158	158							1	
DNTTVTR	oFuc(1)HexNAc(1)	1181.5412	0.54117591	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	3	28.879	28.762	2	0.0063908	5872	GX_QE_U300_20240930_Hela_B1	76.221	55.94			46256000	12264000	33992000	85	89	79	167;168;169;170	159;160;161	161				30			3	
DQGSAYANR	oFuc(1)HexNAc(1)	1356.5794	0.57935233	235	Q5ZPR3	CD276	CD276 antigen	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	29.682	29.59	2	2.2515E-59	5516	GX_QE_U300_20240930_Hela_A1	160.91	133.78			47557000	27628000	19929000	86	235	80	171;172	162;163	162				81			2	
DQHFVKIQVK	Unmodified	1240.6928	0.69280637	45	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	33.269	33.08	3	0.013139	6747	GX_QE_U300_20240930_Hela_B1	43.297	21.551			0	0	0	87	45	81	173	164	164							1	
DQVANSAFVER	Unmodified	1234.5942	0.59421454	70	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		36.886	36.886	2	0.016174	8138	GX_QE_U300_20240930_Hela_A1	43.512	23.726			4731300	4731300	0	88	70	82	174	165	165							0	
DSLLQDGEFSMDLR	Oxidation (M)	1640.7352	0.73520105	69	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	57.551	57.462	2	3.528E-11	15077	GX_QE_U300_20240930_Hela_B1	105.65	79.265			15562000	6116400	9446100	89	69	83	175;176	166;167	167						36	2	
DSRPSQAAGDNQGDEAKEQTFSGGTSQDTK	Unmodified	3111.3613	0.36132065	276	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	0	0	0	2	By MS/MS		2		27.398	27.398	3;4	7.2228E-13	4719	GX_QE_U300_20240930_Hela_A1	67.283	58.574			37239000	37239000	0	90	276	84	177;178	168;169	168							2	
DSTLIMQLLR	Oxidation (M)	1204.6486	0.64855829	192	P63104;P27348;Q04917;P31946;P61981;P31947;P62258	YWHAZ;YWHAQ;YWHAH;YWHAB;YWHAG;SFN;YWHAE	14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein eta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon	yes	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	68.807	68.75	2	0.012464	19040	GX_QE_U300_20240930_Hela_B1	65.246	50.833			10003000	2363700	7639400	91	192	85	179;180	170	170						104	1	
DTCTQECSYFNITK	oFuc(1)HexNAc(1)	2141.8769	0.87691584	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		3		52.916	52.916	2	0.00012905	13392	GX_QE_U300_20240930_Hela_A1	82.925	67.353			54425000	54425000	0	92	57	86	181;182;183	171;172;173	172				11			3	
DTEEEDFHVDQVTTVK	Unmodified	1890.8483	0.84831655	35	P01009	SERPINA1	Alpha-1-antitrypsin;Short peptide from AAT	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		2	43.328	43.142	2;3	3.6913E-26	10205	GX_QE_U300_20240930_Hela_B1	101.15	75.235			91033000	0	91033000	93	35	87	184;185	174;175	174							2	
DVFLGMFLYEYAR	Oxidation (M)	1638.7752	0.77521537	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	1	0	By MS/MS		1		77.778	77.778	2	0.0038814	22056	GX_QE_U300_20240930_Hela_A1	70.977	40.723		+	3319600	3319600	0	94	4	88	186	176	176						2	1	
DVFLGMFLYEYAR	Unmodified	1622.7803	0.78030075	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	4	88.158	88.028	2;3	0.0021791	24559	GX_QE_U300_20240930_Hela_B1	53.869	42.336		+	103390000	10029000	93358000	95	4	88	187;188;189;190;191	177;178;179;180;181;182	179							6	
DVNAAIATIK	Unmodified	1014.571	0.5709599	197;258	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	44.05	43.956	2	0.0090415	10476	GX_QE_U300_20240930_Hela_B1	70.1	44.161			32513000	16355000	16158000	96	197;258	89	192;193	183	183							1	
DYVSQFEGSALGK	Unmodified	1399.662	0.66195975	43	P02647	APOA1	Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		56.113	56.113	2	0.0016157	14676	GX_QE_U300_20240930_Hela_A1	88.596	71.669			4865800	4865800	0	97	43	90	194	184	184							1	
EAALSTALSEKR	Unmodified	1274.683	0.68302954	42	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	33.772	33.583	2	0.015337	6924	GX_QE_U300_20240930_Hela_B1	41.283	22.503			0	0	0	98	42	91	195	185	185							1	
EAGNHTSGAGLVQINK	oFuc(1)HexNAc(1)	1970.9545	0.95451296	115	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	4	3	36.819	36.74	2;3	7.226799999999999E-26	8020	GX_QE_U300_20240930_Hela_A1	118.72	105.84			399940000	217810000	182130000	99	115	92	196;197;198;199;200;201;202	186;187;188;189;190;191;192;193;194;195	188				52;53			10	
EDLIWELLNQAQEHFGK	Unmodified	2069.0218	0.02180466	46	P02787	TF	Serotransferrin	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		2	84.004	83.779	2;3	0.00012555	24294	GX_QE_U300_20240930_Hela_B1	84.718	75.396			17637000	0	17637000	100	46	93	203;204	196;197	196							1	
EDLYLKPIQR	Unmodified	1273.703	0.7030367	95	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	40.255	40.072	2	0.0044664	9172	GX_QE_U300_20240930_Hela_B1	86.953	63.525			0	0	0	101	95	94	205	198	198							1	
EEKALNLEMK	Oxidation (M)	1219.6118	0.61183843	239	Q6ZQQ6	WDR87	WD repeat-containing protein 87	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	49.921	49.824	2	0.012996	12455	GX_QE_U300_20240930_Hela_B1	41.796	9.9249			66425000	20484000	45941000	102	239	95	206;207	199	199						120	0	
EELQANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEK	Unmodified	4585.1692	0.16921636	139	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	0	0	0	2	By MS/MS		1		35.895	35.895	4	3.2434E-166	7752	GX_QE_U300_20240930_Hela_A1	168.21	153.1			48445000	48445000	0	103	139	96	208	200	200							1	
EFNAETFTFHADICTLSEK	Unmodified	2259.0154	0.015398653	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	3	59.926	59.763	2;3	1.6098E-106	15979	GX_QE_U300_20240930_Hela_B1	163.79	146.24		+	286110000	0	286110000	104	4	97	209;210;211;212	201;202;203;204;205;206;207	203							6	
EGMNIVEAMER	2 Oxidation (M)	1309.5642	0.56423631	191	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	0	0	2	0	By MS/MS	By MS/MS	1	1	30.541	30.448	2	0.00086668	5857	GX_QE_U300_20240930_Hela_B1	73.499	34.195			0	0	0	105	191	98	213;214	208;209	209						101;102	2	
EIANNIDTMAK	Oxidation (M);O(1)Fuc(1)HexNAc(1)(N)	1580.724	0.72396766	180	P60508	ERVFRD-1	Syncytin-2;Surface protein;Transmembrane protein	yes	yes	0	0	1	0	0	0	1	0	By MS/MS	By MS/MS	1	1	41.31	41.218	2	0.018246	9592	GX_QE_U300_20240930_Hela_A1	52.716	27.718			38218000	17958000	20260000	106	180	99	215;216	210	210		2;3				90	1	
EIAQDFKTDLR	Unmodified	1334.683	0.68302954	241	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	40.154	39.972	2	0.010682	9137	GX_QE_U300_20240930_Hela_B1	66.19	20.193			0	0	0	107	241	100	217	211	211							1	
EIKTVESITDIR	Unmodified	1402.7668	0.76675917	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	43.332	43.239	2;3	6.2535E-08	10302	GX_QE_U300_20240930_Hela_A1	104.22	66.663			129410000	36086000	93324000	108	89	101	218;219;220;221	212;213	212							2	
EIQTAVR	Unmodified	815.45012	0.45011648	25;64	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	0	0	0	0	0	By MS/MS		1		25.859	25.859	2	2.6796E-05	4221	GX_QE_U300_20240930_Hela_A1	106.76	47.12			1712000	1712000	0	109	25;64	102	222	214	214							1	
EITALAPSTMK	Oxidation (M)	1176.606	0.60602477	181;195	P63261;P60709;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	35.261	35.168	2	3.5592E-10	7414	GX_QE_U300_20240930_Hela_B1	109.02	65.252			146100000	56896000	89206000	110	181;195	103	223;224	215;216;217	217						93	3	
EITALAPSTMKIK	Oxidation (M)	1417.7851	0.78505177	181;195	P63261;P60709;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	1	1		By MS/MS		2	35.164	34.977	2;3	0.008947	7398	GX_QE_U300_20240930_Hela_B1	50.791	33.695			31840000	0	31840000	111	181;195	104	225;226	218;219	219						93	2	
EKPYFPIPEEYTFIQNVPLEDR	Unmodified	2723.3483	0.34828376	203	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	68.303	68.187	3	0.00010387	18803	GX_QE_U300_20240930_Hela_B1	60.278	47.349			5879800	0	5879800	112	203	105	227	220;221	220							2	
ELAVPDGYTNR	oFuc(1)HexNAc(1)	1609.7471	0.74714594	129	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	5	3	45.284	45.204	2	1.0044000000000001E-62	11050	GX_QE_U300_20240930_Hela_B1	157.38	103.41			137930000	77932000	59993000	113	129	106	228;229;230;231;232;233;234;235	222;223;224;225;226;227;228;229;230;231;232;233	232				54			12	
ELAVPDGYTNR	OFuc(1)HexNAc(1)(N)	1638.7737	0.77369504	129	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0	0	1	0	0	By MS/MS	By MS/MS	1	1	49.183	49.183	2	0.013042	12317	GX_QE_U300_20240930_Hela_A1	49.423	25.088			16122000	16122000	0	114	129	106	236;237	234;235	234					6		2	
ELISNSSDALDKIR	Unmodified	1559.8155	0.81550028	70	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	43.729	43.543	3	0.00099489	10357	GX_QE_U300_20240930_Hela_B1	67.136	41.198			0	0	0	115	70	107	238	236	236							1	
ELKVRVAAQNER	Fuc(O)	1803.9327	0.9326553	233	Q5T9S5	CCDC18	Coiled-coil domain-containing protein 18	yes	yes	0	1	0	0	0	0	0	2	By MS/MS		1		38.909	38.909	2	0.013888	8818	GX_QE_U300_20240930_Hela_A1	42.001	26.11			8032800	8032800	0	116	233	108	239	237	237	2						1	
ELLLNTSEVTVR	oFuc(1)HexNAc(1)	1748.9044	0.90437487	245	Q8N8Z6	DCBLD1	Discoidin, CUB and LCCL domain-containing protein 1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	55.625	55.625	2	0.00046924	14528	GX_QE_U300_20240930_Hela_A1	81.565	53.552			6947400	6947400	0	117	245	109	240;241	238;239	238				87			2	
ENELTYYCCKK	Unmodified	1506.6483	0.6483003	96	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	33.501	33.406	3	0.0073983	6859	GX_QE_U300_20240930_Hela_B1	53.569	30.927			7583400	3039000	4544400	118	96	110	242;243	240	240							1	
EQHQHSDLDSNQTHSSGTVTSSSSTANIDDLKK	Unmodified	3553.6153	0.61530351	216	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		29.214	29.214	5	0.001197	5380	GX_QE_U300_20240930_Hela_A1	35.96	23.764			8692300	8692300	0	119	216	111	244	241	241							1	
EQLGEFYEALDCLR	Unmodified	1741.7981	0.79813565	44	P02763	ORM1	Alpha-1-acid glycoprotein 1	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	69.123	69.01	2	0.0013715	19069	GX_QE_U300_20240930_Hela_B1	96.64	71.787			16213000	0	16213000	120	44	112	245	242	242							1	
EQLGPVTQEFWDNLEK	Unmodified	1931.9265	0.92650729	43	P02647;CON__P15497	APOA1	Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	68.652	68.535	2	4.1322000000000003E-25	18893	GX_QE_U300_20240930_Hela_B1	117.07	74.736			9021400	0	9021400	121	43	113	246	243	243							1	
EQLGPVTQEFWDNLEKETEGLR	Unmodified	2617.266	0.26601069	43	P02647	APOA1	Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	76.606	76.483	3	0.0068699	21646	GX_QE_U300_20240930_Hela_B1	35.195	17.039			7274100	0	7274100	122	43	114	247	244	244							0	
EQVANSAFVER	Unmodified	1248.6099	0.6098646	75	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	34.883	34.789	2	1.7064E-06	7349	GX_QE_U300_20240930_Hela_B1	98.943	63.843			18734000	6132100	12602000	123	75	115	248;249	245;246	246							2	
ERHPGSFDVVHVK	Unmodified	1505.7739	0.77391024	119	P22090;P62701	RPS4Y1;RPS4X	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	30.424	30.24	4	3.4643E-07	5712	GX_QE_U300_20240930_Hela_B1	97.69	83.391			5474600	0	5474600	124	119	116	250	247	247							1	
ESEKELALVKR	Unmodified	1300.7351	0.73506511	115	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	1	1	28.608	28.523	3	0.0005987	5115	GX_QE_U300_20240930_Hela_B1	84.658	44.613			20907000	4695400	16212000	125	115	117	251;252	248;249	249							2	
ETCFAEEGKK	Unmodified	1197.5336	0.53358811	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	24.191	24.135	3	0.015571	3660	GX_QE_U300_20240930_Hela_B1	59.426	55.533		+	3793100	278610	3514500	126	4	118	253;254	250	250							1	
ETYGEMADCCAK	Unmodified	1433.5261	0.52613625	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	33.297	33.202	2	3.0195E-05	6771	GX_QE_U300_20240930_Hela_A1	96.342	96.342		+	33008000	17104000	15904000	127	4	119	255;256	251;252	251							2	
EVATNSELVQSGK	Unmodified	1360.6834	0.68342347	10	CON__Q04695;CON__Q9QWL7;Q04695;CON__P02533;P02533	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	30.453	30.268	2	1.2435000000000002E-25	5751	GX_QE_U300_20240930_Hela_B1	126.67	84.562		+	8989100	0	8989100	128	10	120	257	253	253							1	
EVDEQMLNVQNK	Oxidation (M)	1461.677	0.67695789	198;67	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	31.914	31.82	2	2.0417E-18	6295	GX_QE_U300_20240930_Hela_A1	119.68	96.851			22267000	6448100	15819000	129	67;198	121	258;259	254;255	254						31	2	
EVQYLLNKAK	Unmodified	1204.6816	0.68157298	277	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	34.841	34.654	2	0.0082214	7297	GX_QE_U300_20240930_Hela_B1	68.735	50.51			0	0	0	130	277	122	260	256	256							1	
EYQELMNVK	Oxidation (M)	1168.5434	0.54342452	6;12	P05787;CON__P05787;CON__H-INV:HIT000292931;P02538;P04259;P48668;CON__P04259;CON__P48668;CON__P02538;CON__Q8BGZ7;CON__P50446	KRT8;KRT6A;KRT6B;KRT6C	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C	no	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	2	33.28	33.186	2	3.5221E-07	6742	GX_QE_U300_20240930_Hela_B1	98.458	61.437		+	16981000	7661600	9319400	131	6;12	123	261;262;263	257;258	258						6	2	
FAAKGEGQLGPAER	Unmodified	1429.7314	0.73137672	95	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		28.597	28.597	3	0.00047493	5166	GX_QE_U300_20240930_Hela_A1	51.546	40.334			0	0	0	132	95	124	264	259	259							1	
FADLSEAANR	Unmodified	1092.52	0.51998696	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	37.292	37.2	2	3.6984000000000003E-75	8159	GX_QE_U300_20240930_Hela_B1	164.96	107.78			23228000	5366400	17862000	133	77	125	265;266	260;261	261							2	
FAGVFHVEKNGR	Unmodified	1359.7048	0.70476804	109	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	33.221	33.126	2;3	6.7715E-42	6770	GX_QE_U300_20240930_Hela_B1	115.33	89.941			128090000	20935000	107150000	134	109	126	267;268;269;270	262;263	262							2	
FANEYPNITR	oFuc(1)HexNAc(1)	1599.7417	0.74166663	29	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	44.762	44.668	2	0.0010094	10782	GX_QE_U300_20240930_Hela_A1	75.695	60.156			22693000	13139000	9553300	135	29	127	271;272	264;265	264				7			2	
FANYIDKVR	Unmodified	1124.5978	0.59784335	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	36.85	36.758	2;3	2.7403000000000002E-24	8030	GX_QE_U300_20240930_Hela_B1	149.65	115.65			70976000	23669000	47307000	136	77	128	273;274;275;276	266;267	267							2	
FASFIDKVR	Unmodified	1081.592	0.59202969	6;7;11;12	P05787;CON__P05787;O95678;P02538;P04259;P48668;CON__P04259;CON__P48668;CON__P02538;CON__O95678;CON__P35908;CON__Q6IFZ6;CON__Q9NSB2;CON__Q3TTY5;CON__Q5XKE5;CON__Q6ISB0;CON__P12035;CON__Q01546;CON__P35908v2;CON__Q8VED5;CON__Q32MB2;CON__P07744;Q5XKE5;Q7RTS7;Q3SY84;Q9NSB2;Q01546;P35908;P12035;Q86Y46;CON__Q3SY84;CON__Q9R0H5;CON__Q6NXH9;CON__Q7RTS7;CON__Q5XQN5;CON__Q922U2;CON__P13647;P13647;CON__Q8BGZ7;CON__P50446;CON__Q3KNV1;CON__P08729;P08729;CON__Q9DCV7;CON__Q14CN4-1;CON__Q6IME9;Q14CN4	KRT8;KRT75;KRT6A;KRT6B;KRT6C;KRT79;KRT74;KRT71;KRT84;KRT76;KRT2;KRT3;KRT73;KRT5;KRT7;KRT72	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 71;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 72	no	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	43.111	43.018	2	0.012619	10192	GX_QE_U300_20240930_Hela_B1	103.83	46.656		+	36334000	9566200	26768000	137	6;11;12;7	129	277;278	268	268							1	
FETLQAQAGK	Unmodified	1091.5611	0.56112349	7	CON__Q3KNV1;CON__P08729;P08729;CON__Q9DCV7	KRT7	Keratin, type II cytoskeletal 7	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	32.816	32.627	2	5.72E-15	6588	GX_QE_U300_20240930_Hela_B1	113.26	70.657		+	0	0	0	138	7	130	279	269	269							1	
FKDLGEENFK	Unmodified	1225.5979	0.59790293	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	2	36.498	36.375	2;3	0.0016714	7903	GX_QE_U300_20240930_Hela_B1	83.397	59.968		+	61769000	18978000	42791000	139	4	131	280;281;282	270;271	271							2	
FLIPNASQAESK	Unmodified	1303.6772	0.67721588	192	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	44.567	44.473	2	0.0055014	10661	GX_QE_U300_20240930_Hela_B1	73.499	42.936			21064000	6393600	14671000	140	192	132	283;284	272	272							1	
FNAHGDANTIVCNSK	Unmodified	1646.7471	0.74710314	79	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	30.408	30.315	3	0.0032105	5757	GX_QE_U300_20240930_Hela_A1	53.924	30.779			12345000	6733100	5612300	141	79	133	285;286	273	273							1	
FNVWDTAGQEK	Unmodified	1293.599	0.59896556	187	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	48.13	47.938	2	0.003624	11876	GX_QE_U300_20240930_Hela_B1	81.263	52.093			7452900	0	7452900	142	187	134	287;288	274;275	275							2	
FNWNHCGEMAPACKR	Oxidation (M)	1892.7869	0.78687624	105	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	2	2	30.483	30.391	3;4	2.2164E-30	5821	GX_QE_U300_20240930_Hela_B1	126.63	113.84			48178000	18199000	29979000	143	105	135	289;290;291;292	276;277;278	277						62	3	
FNWNHCGEMAPACKR	Unmodified	1876.792	0.79196162	105	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	2	34.559	34.434	3;4	2.4008E-16	7232	GX_QE_U300_20240930_Hela_B1	110.98	97.632			33731000	6166800	27564000	144	105	135	293;294;295	279;280;281	280							2	
FNWYVDGVEVHNAK	Unmodified	1676.7947	0.79470526	39	P01857	IGHG1	Ig gamma-1 chain C region	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	2	50.132	50.003	2;3	1.1805E-06	12577	GX_QE_U300_20240930_Hela_B1	97.551	80.153			35695000	10644000	25051000	145	39	136	296;297;298	282;283	282							2	
FQLQATTKEGPGEAIVR	Unmodified	1843.9792	0.97921156	144	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	41.647	41.464	3	9.175E-34	9640	GX_QE_U300_20240930_Hela_B1	123.97	102.14			11168000	0	11168000	146	144	137	299	284	284							1	
FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK	Unmodified	3512.6956	0.69559142	241	Q71DI3	HIST2H3A	Histone H3.2	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	2	90.438	90.358	3;4	5.4822E-11	26457	GX_QE_U300_20240930_Hela_B1	60.348	48.824			80450000	6731700	73718000	147	241	138	300;301;302;303	285;286	285							2	
FSGSGSGTDFTLTISR	Unmodified	1631.7791	0.77911477	0	A0A0C4DH25;P01619	IGKV3D-20	Ig kappa chain V-III region B6	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	51.999	51.806	2	1.4431999999999999E-26	13181	GX_QE_U300_20240930_Hela_B1	127.02	107.23			0	0	0	148	0	139	304	287	287							1	
FTFTSHTPGEHQICLHSNSTK	oFuc(1)HexNAc(1)	2804.2712	0.27117242	259	Q9BVK6	TMED9	Transmembrane emp24 domain-containing protein 9	yes	yes	0	0	0	0	1	0	0	0		By MS/MS		1	39.363	39.181	4	0.0010005	8862	GX_QE_U300_20240930_Hela_B1	47.919	29.087			112430000	0	112430000	149	259	140	305	288	288				97			1	
FTGLSKEELLK	Unmodified	1263.7075	0.70745338	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	41.705	41.613	3	0.015994	9673	GX_QE_U300_20240930_Hela_B1	38.634	23.758			24429000	3849500	20580000	150	74	141	306;307	289	289							0	
FVIKPIDKK	Unmodified	1086.6801	0.68011642	104	P26038;P35241;P15311	MSN;RDX;EZR	Moesin;Radixin;Ezrin	yes	no	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	1	1	30.301	30.209	3	0.0033513	5703	GX_QE_U300_20240930_Hela_B1	70.908	38.276			16798000	5777600	11020000	151	104	142	308;309	290	290							1	
FYEQMNGPVAGASR	Oxidation (M)	1541.6933	0.69327665	138	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	0	0	1	0		By MS/MS		1	33.076	32.887	2	0.0013288	6679	GX_QE_U300_20240930_Hela_B1	63.473	52.309			0	0	0	152	138	143	310	291	291						75	1	
FYGDEEKDKGLQTSQDAR	Unmodified	2085.9603	0.96032661	135	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	2	2	31.087	30.993	3;4	1.4885000000000002E-130	6006	GX_QE_U300_20240930_Hela_B1	178.14	149.92			109470000	39608000	69860000	153	135	144	311;312;313;314	292;293;294;295	294							4	
GADFLVTEVENGGSLGSK	Unmodified	1778.8687	0.86865806	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	59.205	59.122	2	7.451800000000001E-131	15646	GX_QE_U300_20240930_Hela_B1	184.11	147.43			98054000	35577000	62478000	154	100	145	315;316	296;297;298	298							3	
GADFLVTEVENGGSLGSKK	Unmodified	1906.9636	0.96362108	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		2		53.057	53.057	2;3	1.0484E-14	13612	GX_QE_U300_20240930_Hela_A1	103.85	87.729			30117000	30117000	0	155	100	146	317;318	299;300	299							2	
GAEEMETVIPVDVMR	2 Oxidation (M)	1706.7855	0.78552206	256	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	0	0	2	0	By MS/MS		1		45.676	45.676	2	0.0028309	11151	GX_QE_U300_20240930_Hela_A1	41.052	24.828			0	0	0	156	256	147	319	301	301						124;125	1	
GAGIGGLGITVEGPSESK	Unmodified	1627.8417	0.84171503	28	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		51.435	51.435	2	0.00014986	13081	GX_QE_U300_20240930_Hela_A1	62.042	49.275			4031200	4031200	0	157	28	148	320	302	302							1	
GAGTGGLGLAVEGPSEAK	Unmodified	1569.7999	0.79985021	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	43.375	43.283	2	2.7241E-05	10319	GX_QE_U300_20240930_Hela_A1	105.14	88.507			29185000	11300000	17884000	158	117	149	321;322	303;304	303							2	
GALQNIIPASTGAAK	Unmodified	1410.7831	0.78307794	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	47.134	47.038	2	9.334999999999999E-89	11557	GX_QE_U300_20240930_Hela_B1	167.18	142.26			254930000	152050000	102870000	159	51	150	323;324;325	305;306;307;308;309;310	309							6	
GALQNIIPASTGAAKAVGK	Unmodified	1766.005	0.0050323835	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	45.504	45.409	3	0.0041608	10962	GX_QE_U300_20240930_Hela_B1	56.936	47.014			18986000	5816600	13169000	160	51	151	326;327	311	311							1	
GANPVEIR	Unmodified	854.46102	0.46101552	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	30.244	30.152	2	2.3401E-10	5725	GX_QE_U300_20240930_Hela_A1	117.93	77.013			16936000	9340900	7595400	161	86	152	328;329	312	312							1	
GCITIIGGGDTATCCAK	Unmodified	1753.7797	0.77972517	33	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	42.036	41.944	2	1.7525E-11	9898	GX_QE_U300_20240930_Hela_A1	99.531	81.263			11819000	6433400	5385200	162	33	153	330;331	313;314	313							2	
GDKNVTMGQSSAR	oFuc(1)HexNAc(1)	1725.7839	0.78394215	164	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	1	1	27.832	27.747	3	0.0018195	4812	GX_QE_U300_20240930_Hela_A1	66.022	53.461			32188000	18222000	13965000	163	164	154	332;333	315;316;317;318	315				65			4	
GDLGIEIPAEK	Unmodified	1140.6027	0.60265396	100	P14618;P30613	PKM;PKLR	Pyruvate kinase PKM;Pyruvate kinase PKLR	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	48.283	48.187	2	1.3376E-15	11934	GX_QE_U300_20240930_Hela_B1	121.6	54.911			123780000	52118000	71658000	164	100	155	334;335	319	319							1	
GEGNETTNMVITWKPLR	Oxidation (M);oFuc(1)HexNAc(1)	2337.1158	0.11584098	144	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	1	0	1	1	By MS/MS		1		49.688	49.688	3	0.00087492	12492	GX_QE_U300_20240930_Hela_A1	52.453	45.872			20636000	20636000	0	165	144	156	336	320	320				56;57		76	1	
GEGNETTNMVITWKPLR	oFuc(1)HexNAc(1)	2321.1209	0.12092636	144	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	1	1	55.089	54.995	3	3.5242E-05	14257	GX_QE_U300_20240930_Hela_B1	83.936	66.127			41976000	12081000	29895000	166	144	156	337;338	321;322	322				56;57			2	
GENSWFSTQVDTVATK	Unmodified	1768.8268	0.82679325	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	54.243	54.052	2	0.00013662	13909	GX_QE_U300_20240930_Hela_B1	86.944	62.125			15876000	0	15876000	167	74	157	339;340	323;324	324							2	
GEQENKNLPQAVASVK	Unmodified	1710.8901	0.89006221	275	Q9Y2I7	PIKFYVE	1-phosphatidylinositol 3-phosphate 5-kinase	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	63.238	63.096	2	0.0053466	16969	GX_QE_U300_20240930_Hela_B1	56.359	38.169			518610000	0	518610000	168	275	158	341	325;326	325							2	
GFAFVQYVNER	Unmodified	1328.6513	0.65133548	71	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	56.634	56.541	2	1.5457E-49	14738	GX_QE_U300_20240930_Hela_B1	149.72	132.49			47072000	17687000	29384000	169	71	159	342;343	327;328	328							2	
GFAFVTFDDHDSVDK	Unmodified	1698.7526	0.75256567	80	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		55.771	55.771	2	0.0011172	14551	GX_QE_U300_20240930_Hela_A1	80.245	54.586			5839100	5839100	0	170	80	160	344	329	329							1	
GFAFVTFESPADAK	Unmodified	1485.714	0.71399532	149	Q96E39;P38159;O75526;Q8N7X1	RBMXL1;RBMX;RBMXL2;RBMXL3	RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	62.065	61.991	2	5.7322E-33	16553	GX_QE_U300_20240930_Hela_B1	133.07	98.262			21820000	9682000	12138000	171	149	161	345;346;347	330;331	331							2	
GFCFITFKEEEPVKK	Unmodified	1857.9335	0.93350692	217	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	0	0	0	2	By matching	By MS/MS	1	2	49.334	49.206	3;4	0.00048044	12311	GX_QE_U300_20240930_Hela_B1	65.172	50.493			47806000	9324600	38481000	172	217	162	348;349;350	332;333	332							2	
GFCFITYTDEEPVKK	Unmodified	1832.8655	0.86548694	17	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	51.699	51.506	3	0.00015904	13084	GX_QE_U300_20240930_Hela_B1	71.692	57.434			0	0	0	173	17	163	351	334	334							1	
GFGDGYNGYGGGPGGGNFGGSPGYGGGR	Unmodified	2494.0323	0.03226278	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		48.519	48.519	3	2.1087E-08	12127	GX_QE_U300_20240930_Hela_A1	66.012	43.791			9661500	9661500	0	174	120	164	352	335	335							1	
GFGFGQGAGALVHSE	Unmodified	1432.6735	0.67352749	116	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		52.573	52.573	2	1.097E-06	13453	GX_QE_U300_20240930_Hela_A1	93.058	81.011			8575100	8575100	0	175	116	165	353	336	336							1	
GFGFVDFNSEEDAK	Unmodified	1560.6733	0.67325272	114	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	59.032	58.949	2	2.2642E-07	15579	GX_QE_U300_20240930_Hela_B1	97.734	68.647			31300000	15601000	15698000	176	114	166	354;355	337;338	338							2	
GFGFVTFDDHDPVDK	Unmodified	1694.7577	0.75765105	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	2	56.464	56.371	2;3	6.082E-07	14708	GX_QE_U300_20240930_Hela_B1	95.401	76.67			111940000	25394000	86548000	177	120	167	356;357;358;359	339;340;341;342	342							3	
GFGFVTFDDHDPVDKIVLQK	Unmodified	2276.1477	0.14773345	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		2	62.25	62.102	3;4	1.1155E-13	16646	GX_QE_U300_20240930_Hela_B1	104.03	93.627			63560000	0	63560000	178	120	168	360;361	343;344	344							2	
GFGFVTFSSMAEVDAAMAARPHSIDGR	2 Oxidation (M)	2858.3116	0.31159745	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	2	1		By MS/MS		1	58.551	58.377	4	2.8213E-48	15372	GX_QE_U300_20240930_Hela_B1	122.41	80.235			25282000	0	25282000	179	120	169	362	345	345						70;71	1	
GFGFVTYATVEEVDAAMNARPHK	Oxidation (M)	2525.2009	0.20090801	80	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		2	57.952	57.779	3;4	8.5666E-10	15191	GX_QE_U300_20240930_Hela_B1	76.733	62.861			12993000	0	12993000	180	80	170	363;364	346;347	346						40	2	
GFGYKGSCFHR	Unmodified	1314.5928	0.59277475	191	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	30.475	30.291	3	0.011838	5759	GX_QE_U300_20240930_Hela_B1	67.385	50.838			13016000	0	13016000	181	191	171	365	348	348							1	
GFKDQIYDIFQK	Unmodified	1500.7613	0.76127986	182	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	59.297	59.213	2	3.2802E-151	15737	GX_QE_U300_20240930_Hela_B1	193.3	163.56			34060000	3938300	30122000	182	182	172	366;367	349;350	350							2	
GFPTIYFSPANK	Unmodified	1340.6765	0.6764876	140	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	57.692	57.602	2	0.0017796	15114	GX_QE_U300_20240930_Hela_A1	83	64.328			16992000	6276600	10715000	183	140	173	368;369	351	351							1	
GFQEVVTPNIFNSR	Unmodified	1606.8104	0.81035532	133	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		58.673	58.673	2	1.9671E-05	15550	GX_QE_U300_20240930_Hela_A1	96.103	64.874			0	0	0	184	133	174	370	352	352							1	
GGAEQFMEETER	Oxidation (M)	1398.5722	0.57215846	257	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		32.019	32.019	2	0.013099	6423	GX_QE_U300_20240930_Hela_A1	61.353	48.727			4702300	4702300	0	185	257	175	371	353	353						126	1	
GGAVVDEGPTGVK	Unmodified	1184.6037	0.60371659	19	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	30.147	30.055	2	0.0020263	5699	GX_QE_U300_20240930_Hela_A1	79.974	70.386			7100300	4154800	2945500	186	19	176	372;373	354;355	354							2	
GGDGINSIGGGQKVR	Unmodified	1413.7324	0.73243935	15	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	28.458	28.287	3	4.2365E-17	5052	GX_QE_U300_20240930_Hela_A1	103.21	80.296			10294000	0	10294000	187	15	177	374;375	356;357	356							2	
GGEIQPVSVK	Unmodified	1012.5553	0.55530983	184	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	31.625	31.531	2	1.0654999999999999E-19	6177	GX_QE_U300_20240930_Hela_B1	125.71	75.081			54964000	26116000	28848000	188	184	178	376;377	358;359	359							2	
GGELVYTDSEAR	Unmodified	1295.5994	0.59935949	223	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	35.584	35.49	2	0.0017796	7587	GX_QE_U300_20240930_Hela_B1	83	42.013			11159000	2362800	8796100	189	223	179	378;379	360;361	361							2	
GGGGNFGPGPGSNFR	Unmodified	1376.6222	0.62216062	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	37.657	37.565	2	4.9716E-39	8386	GX_QE_U300_20240930_Hela_A1	131.83	80.76			122150000	61648000	60506000	190	120	180	380;381	362;363;364;365	363							4	
GGGQIIPTAR	Unmodified	968.54033	0.54032847	95	P13639;Q15029	EEF2;EFTUD2	Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	33.439	33.344	2	2.9302E-09	6788	GX_QE_U300_20240930_Hela_B1	110.38	92.99			32079000	13946000	18132000	191	95	181	382;383	366	366							1	
GGHMDDGGYSMNFNMSSSR	3 Oxidation (M)	2096.7622	0.76223721	149	Q96E39;P38159	RBMXL1;RBMX	RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	no	0	0	0	0	0	0	3	0	By MS/MS	By MS/MS	1	1	28.919	28.829	3	7.616699999999999E-38	5251	GX_QE_U300_20240930_Hela_B1	123.08	119.11			31734000	19560000	12174000	192	149	182	384;385	367;368	368						80;81;82	2	
GGHVDLTMLGAMQVSK	2 Oxidation (M)	1674.8069	0.8069262	177	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	0	0	2	0	By MS/MS	By MS/MS	1	1	39.479	39.388	3	0.00030521	8931	GX_QE_U300_20240930_Hela_B1	66.568	54.985			25893000	9615800	16277000	193	177	183	386;387	369	369						86;87	1	
GGHWATEGCQVLGSK	Unmodified	1585.7307	0.73072479	164	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	36.381	36.288	3	0.0010401	7877	GX_QE_U300_20240930_Hela_A1	58.071	47.002			24326000	7889700	16436000	194	164	184	388;389	370	370							1	
GGIMLPEKSQGK	Oxidation (M)	1259.6544	0.65437195	184	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	1	1	By MS/MS		2		29.366	29.366	2;3	0.0046742	5412	GX_QE_U300_20240930_Hela_A1	59.898	36.047			18083000	18083000	0	195	184	185	390;391	371;372	371						99	2	
GGIVDEGALLR	Unmodified	1098.6033	0.60332266	21	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	48.825	48.729	2	0.014468	12142	GX_QE_U300_20240930_Hela_B1	66.692	42.537			15429000	6465500	8963400	196	21	186	392;393	373	373							1	
GGKPEPPAMPQPVPTA	Oxidation (M)	1588.7919	0.79192806	123	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	32.58	32.485	2	2.1534E-25	6607	GX_QE_U300_20240930_Hela_A1	114.7	95.925			58298000	33371000	24927000	197	123	187	394;395	374;375;376;377	375						73	4	
GGMGSGGLATGIAGGLAGMGGIQNEK	2 Oxidation (M)	2292.0838	0.083829344	58	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	0	0	2	0	By MS/MS	By matching	1	1	48.572	48.476	3	1.6891E-30	12078	GX_QE_U300_20240930_Hela_A1	112.88	94.047			31540000	21709000	9830800	198	58	188	396;397	378	378						24;25	1	
GGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR	2 Oxidation (M)	3366.5602	0.56023693	58	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	0	0	2	1	By MS/MS	By MS/MS	1	1	51.857	51.761	3	4.0306E-12	13189	GX_QE_U300_20240930_Hela_A1	62.383	43.173			27629000	12063000	15566000	199	58	189	398;399	379;380	379						24;25	2	
GGNFGFGDSR	Unmodified	1012.4363	0.43625733	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	39.387	39.296	2	0.013538	8895	GX_QE_U300_20240930_Hela_B1	66.504	60.744			65183000	27301000	37882000	200	120	190	400;401	381	381							1	
GGNRFEPYANPTKR	Unmodified	1605.8012	0.80118762	173	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	28.743	28.572	4	0.0026074	5147	GX_QE_U300_20240930_Hela_B1	55.173	40.216			8467900	0	8467900	201	173	191	402	382	382							1	
GGPGSAVSPYPTFNPSSDVAALHK	Unmodified	2355.1495	0.14952437	50	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	50.595	50.499	3	1.5434E-132	12762	GX_QE_U300_20240930_Hela_B1	175.77	158.37			64622000	36448000	28174000	202	50	192	403;404	383;384	384							2	
GGVVGIKVDK	Unmodified	970.58113	0.58113065	49	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	29.696	29.696	2	0.0035652	5531	GX_QE_U300_20240930_Hela_B1	76.221	38.663			10930000	10930000	0	203	49	193	405;406	385;386	386							2	
GGVVLKEDALPGQK	Unmodified	1409.7878	0.78782897	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	36.53	36.406	2;3	1.5315E-60	7902	GX_QE_U300_20240930_Hela_B1	147.62	136.72			86189000	17487000	68702000	204	147	194	407;408;409;410	387;388;389;390	390							4	
GHVFEESQVAGTPMFVVK	Oxidation (M)	1976.9666	0.96659797	95	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	2	46.194	46.068	3	8.787799999999998E-19	11192	GX_QE_U300_20240930_Hela_B1	106.35	89.073			66232000	16378000	49854000	205	95	195	411;412;413	391;392;393;394	393						54	4	
GHYTEGAELVDSVLDVVR	Unmodified	1957.9745	0.97452012	198;67	P07437;Q13509;P68371;Q9BVA1;Q13885	TUBB;TUBB3;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-3 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	0	0	0	0	0		By MS/MS		1	69.661	69.548	3	1.5113000000000001E-57	19250	GX_QE_U300_20240930_Hela_B1	141.57	126.88			17078000	0	17078000	206	67;198	196	414	395	395							1	
GHYTEGAELVDSVLDVVRK	Unmodified	2086.0695	0.069483134	198;67	P07437;Q13509;P68371;Q9BVA1;Q13885	TUBB;TUBB3;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-3 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	0	0	0	0	1		By MS/MS		1	64.849	64.713	3	1.8024E-38	17557	GX_QE_U300_20240930_Hela_B1	124.99	114.35			48564000	0	48564000	207	67;198	197	415	396;397	396							2	
GIDPFSLDALSK	Unmodified	1261.6554	0.65541781	152	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		63.725	63.725	2	0.0075281	17264	GX_QE_U300_20240930_Hela_A1	70.977	7.6939			6218700	6218700	0	208	152	198	416	398	398							1	
GIHPTIISESFQK	Unmodified	1455.7722	0.7721789	170	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	2	42.235	42.143	2;3	8.5818E-06	9882	GX_QE_U300_20240930_Hela_B1	90.434	79.27			37905000	12049000	25855000	209	170	199	417;418;419;420	399;400	399							2	
GILAADESTGSIAK	Unmodified	1331.6933	0.69325988	49	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	39.575	39.484	2	2.9431E-49	8948	GX_QE_U300_20240930_Hela_B1	141.1	103.45			57143000	30418000	26725000	210	49	200	421;422	401;402	402							2	
GILAADESTGSIAKR	Unmodified	1487.7944	0.79437091	49	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	35.157	35.063	2;3	5.3402E-17	7430	GX_QE_U300_20240930_Hela_B1	113.53	76.183			100480000	37474000	63010000	211	49	201	423;424;425;426	403;404;405	405							3	
GILFVGSGVSGGEEGAR	Unmodified	1590.8002	0.80018457	172	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	51.84	51.743	2	1.4836E-11	13204	GX_QE_U300_20240930_Hela_A1	100.55	80.223			14527000	5496500	9030500	212	172	202	427;428;429	406;407	406							2	
GIPHLVTHDAR	Unmodified	1214.652	0.65200419	119	P22090;P62701;Q8TD47	RPS4Y1;RPS4X;RPS4Y2	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.06	28.971	3	0.00052402	5372	GX_QE_U300_20240930_Hela_B1	76.655	42.789			23271000	7674500	15597000	213	119	203	430;431	408;409;410	410							3	
GISEETTTGVHNLYK	Unmodified	1647.8104	0.8104149	124	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	37.225	37.133	3	0.00099969	8196	GX_QE_U300_20240930_Hela_B1	72.898	48.555			19077000	9468300	9608300	214	124	204	432;433	411	411							1	
GISHVIVDEIHER	Unmodified	1502.7841	0.78414057	211	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	39.825	39.734	3	0.0018704	9116	GX_QE_U300_20240930_Hela_B1	73.386	46.288			20143000	4276100	15867000	215	211	205	434;435	412	412							1	
GISQEQMQEFR	Oxidation (M)	1367.614	0.6139637	22	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	31.889	31.794	2	1.0488E-06	6285	GX_QE_U300_20240930_Hela_B1	99.815	67.863			31210000	14895000	16315000	216	22	206	436;437	413;414	414						12	2	
GITGVEDKESWHGKPLPK	Unmodified	1977.032	0.031975415	137	P29401	TKT	Transketolase	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		2	32.788	32.598	3;4	6.0848E-05	6563	GX_QE_U300_20240930_Hela_B1	73.464	50.088			25797000	0	25797000	217	137	207	438;439	415;416	415							2	
GITINAAHVEYSTAAR	Unmodified	1672.8533	0.85328277	167	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		39.834	39.834	3	0.0065175	9158	GX_QE_U300_20240930_Hela_A1	34.277	23.489			7433100	7433100	0	218	167	208	440	417	417							1	
GIVDQSQQAYQEAFEISKK	Unmodified	2168.075	0.074962442	192	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		54.596	54.596	3	5.676600000000001E-107	14138	GX_QE_U300_20240930_Hela_A1	164.68	137.47			32119000	32119000	0	219	192	209	441	418;419	419							2	
GIVEFASKPAAR	Unmodified	1244.6877	0.68772099	121	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	1	35.999	35.937	2;3	1.1388E-07	7783	GX_QE_U300_20240930_Hela_A1	102.61	78.273			21298000	14943000	6354300	220	121	210	442;443;444	420;421	420							2	
GIVEFSGKPAAR	Unmodified	1230.6721	0.67207093	224	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	33.937	33.843	2;3	0.00012594	7025	GX_QE_U300_20240930_Hela_A1	93.649	74.918			48288000	26533000	21755000	221	224	211	445;446;447;448	422;423;424	422							2	
GIYAYGFEKPSAIQQR	Unmodified	1826.9315	0.93153309	182;150	P60842;Q14240;P38919	EIF4A1;EIF4A2;EIF4A3	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	no	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	2	44.386	44.261	2;3	1.4622E-06	10651	GX_QE_U300_20240930_Hela_A1	93.51	80.883			170980000	73416000	97567000	222	182;150	212	449;450;451	425;426;427;428	426							4	
GKDHVVSDFSEHGSLK	Unmodified	1740.8431	0.84311201	176	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		29.214	29.214	4	0.00083046	5397	GX_QE_U300_20240930_Hela_A1	56.339	37.557			4552900	4552900	0	223	176	213	452	429	429							1	
GKLDVQFSGLTK	Unmodified	1291.7136	0.71360139	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	43.413	43.32	2	0.020601	10279	GX_QE_U300_20240930_Hela_B1	77.593	56.505			19273000	7049900	12223000	224	117	214	453;454	430	430							1	
GKVKVGVNGFGR	Unmodified	1216.704	0.70403976	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By matching	1	1	28.277	28.191	3	9.4891E-09	4965	GX_QE_U300_20240930_Hela_A1	103.91	95.605			10995000	7938600	3056700	225	51	215	455;456	431	431							1	
GLAITFVSDENDAK	Unmodified	1478.7253	0.72528829	13	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	52.371	52.275	2	0.0041859	13340	GX_QE_U300_20240930_Hela_B1	85.813	57.116			29870000	12842000	17028000	226	13	216	457;458	432	432							1	
GLESTTLADKDGEIYCK	Unmodified	1898.8932	0.89315825	116	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	39.715	39.533	3	1.2461E-05	8991	GX_QE_U300_20240930_Hela_B1	50.831	29.598			0	0	0	227	116	217	459	433	433							1	
GLFIIDDK	Unmodified	919.50148	0.50148335	208	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	55.455	55.361	2	0.019066	14408	GX_QE_U300_20240930_Hela_A1	68.787	48.305			38484000	14831000	23654000	228	208	218	460;461	434	434							1	
GLFIIDDKGILR	Unmodified	1358.7922	0.79218606	208	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	60.177	60.017	2	0.0085703	15943	GX_QE_U300_20240930_Hela_B1	62.303	42.162			0	0	0	229	208	219	462	435	435							1	
GLGTDEDTLIEILASR	Unmodified	1701.8785	0.87849447	50	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	75.873	75.757	2	2.6386E-11	21425	GX_QE_U300_20240930_Hela_B1	100.56	84.181			4472600	0	4472600	230	50	220	463	436	436							1	
GLHQSIEEFR	Unmodified	1214.6044	0.60438529	223	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		2	36.372	36.187	2;3	0.00029368	7828	GX_QE_U300_20240930_Hela_B1	96.331	74.825			16008000	0	16008000	231	223	221	464;465	437;438	438							2	
GLILKDHGIR	Unmodified	1120.6717	0.671677	223	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	31.72	31.532	3	0.0066658	6218	GX_QE_U300_20240930_Hela_B1	48.44	26.447			6374600	0	6374600	232	223	222	466	439	439							0	
GLKYELISETGGSHDKR	Unmodified	1888.9643	0.96428978	212	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	0	0	0	0	0	0	2		By MS/MS		1	33.827	33.639	4	0.0001937	6942	GX_QE_U300_20240930_Hela_B1	76.713	62.997			13196000	0	13196000	233	212	223	467	440	440							1	
GLTSVINQK	Unmodified	958.54475	0.54474515	65	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	36.108	36.016	2	6.7647E-86	7738	GX_QE_U300_20240930_Hela_B1	170.06	105.3			89954000	39239000	50714000	234	65	224	468;469	441;442	442							2	
GLVEPVDVVDNADGTQTVNYVPSR	Unmodified	2543.2504	0.25036063	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		55.847	55.847	3	0.010718	14589	GX_QE_U300_20240930_Hela_A1	36.256	25.598			8426200	8426200	0	235	117	225	470	443	443							1	
GLVGEIIKR	Unmodified	983.61277	0.61276513	107	P15531;P22392	NME1;NME2	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	40.447	40.356	2	0.00024391	9314	GX_QE_U300_20240930_Hela_B1	101.64	66.394			27413000	8990200	18423000	236	107	226	471;472	444	444							1	
GLVLIAFSQYLQQCPFDEHVK	Unmodified	2491.257	0.25696633	5	CON__P02769			yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		75.153	75.153	3	0.0072088	21167	GX_QE_U300_20240930_Hela_A1	37.969	28.968		+	1757100	1757100	0	237	5	227	473	445	445							1	
GLVQALQTK	Unmodified	956.56548	0.56548059	166	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	40.313	40.131	2	3.0259E-06	9192	GX_QE_U300_20240930_Hela_B1	98.009	43.953			0	0	0	238	166	228	474	446	446							1	
GMGGAMDLVSSAK	2 Oxidation (M)	1254.5584	0.55842266	177	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	0	0	2	0	By MS/MS		2		30.937	30.937	2	0.00051139	5900	GX_QE_U300_20240930_Hela_A1	71.555	57.348			4948900	4948900	0	239	177	229	475;476	447;448	448						88;89	2	
GNFGGSFAGSFGGAGGHAPGVAR	Unmodified	2033.9456	0.94562002	173	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	45.734	45.64	3	1.2033E-42	11128	GX_QE_U300_20240930_Hela_A1	125.04	114.85			36528000	17832000	18696000	240	173	230	477;478	449;450	449							2	
GNITEYQCHQYITK	oFuc(1)HexNAc(1)	2129.9575	0.95754942	252	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	1	0	0	0		By MS/MS		1	39.056	38.874	3	0.0035324	8766	GX_QE_U300_20240930_Hela_B1	53.777	47.207			19165000	0	19165000	241	252	231	479	451	451				94			1	
GNLGAGNGNLQGPR	Unmodified	1323.6644	0.66435979	157	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	30.234	30.141	2	2.5736E-39	5697	GX_QE_U300_20240930_Hela_A1	136.63	99.614			9737700	5680800	4056900	242	157	232	480;481	452;453	452							2	
GNNFLYTNGK	Unmodified	1126.5407	0.5407224	26	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	37.996	37.813	2	0.0069346	8395	GX_QE_U300_20240930_Hela_B1	90.64	75.858			0	0	0	243	26	233	482	454	454							1	
GNPTVEVDLFTSK	Unmodified	1405.7089	0.70890994	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	53.751	53.654	2	0.00025513	13803	GX_QE_U300_20240930_Hela_A1	88.441	19.431			126680000	54096000	72584000	244	59	234	483;484	455;456;457	455							3	
GNRKNSSK	O(1)Fuc(1)HexNAc(1)(N)	1235.6106	0.61059288	2	A6NCI8	C2orf78	Uncharacterized protein C2orf78	yes	yes	0	0	1	0	0	0	0	2		By MS/MS		1	34.378	34.189	2	0.010109	7137	GX_QE_U300_20240930_Hela_B1	55.676	11.359			0	0	0	245	2	235	485	458	458		0					1	
GPAYGLSR	Unmodified	819.4239	0.42390173	148	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	30.811	30.623	2	1.2018E-06	5876	GX_QE_U300_20240930_Hela_B1	89.296	44.685			0	0	0	246	148	236	486	459	459							1	
GPVLQLHDLKR	Unmodified	1274.7459	0.74590457	156	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	35.623	35.435	3	1.2332E-07	7563	GX_QE_U300_20240930_Hela_B1	103.08	86.451			13164000	0	13164000	247	156	237	487	460	460							1	
GQNQPVLNITNK	Unmodified	1324.7099	0.709913	142	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		37.266	37.266	2	0.0049691	8257	GX_QE_U300_20240930_Hela_A1	74.162	55.85			4924100	4924100	0	248	142	238	488	461	461							1	
GQPIYIQFSNHK	Unmodified	1430.7306	0.73064844	132	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	42.348	42.256	2	0.0075281	9918	GX_QE_U300_20240930_Hela_B1	70.977	53.952			12535000	4724800	7810300	249	132	239	489;490	462	462							1	
GQVGGEINVEMDAAPGVDLSR	Oxidation (M)	2129.0059	0.005896599	10	CON__Q04695;CON__Q9QWL7;Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	48.259	48.259	2	2.1024E-09	12003	GX_QE_U300_20240930_Hela_B1	77.562	59.197		+	6631000	6631000	0	250	10	240	491;492	463;464;465	465						11	3	
GRLDYLSSLK	Unmodified	1150.6346	0.63462279	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	44.315	44.221	2	0.011859	10601	GX_QE_U300_20240930_Hela_B1	72.365	36.154			32306000	16012000	16294000	251	74	241	493;494	466	466							1	
GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK	Unmodified	3887.8596	0.8595733	226	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		38.296	38.296	4	0.0011155	8616	GX_QE_U300_20240930_Hela_A1	21.9	9.9345			8117000	8117000	0	252	226	242	495	467	467							1	
GSTHPQPGVSPPAAPAAPGPK	Unmodified	1919.9854	0.98535957	30	O94925	GLS	Glutaminase kidney isoform, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		31.125	31.125	3	7.0658E-06	5986	GX_QE_U300_20240930_Hela_A1	64.2	49.227			7229400	7229400	0	253	30	243	496	468	468							1	
GSYGDLGGPIITTQVTIPK	Unmodified	1916.0255	0.025493054	185	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	58.041	57.954	2	3.2118E-106	15256	GX_QE_U300_20240930_Hela_B1	164.88	124.53			49331000	15281000	34051000	254	185	244	497;498	469;470	470							2	
GSYVSIHSSGFR	Unmodified	1295.6258	0.62584901	13	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	35.263	35.169	2;3	0.0016016	7490	GX_QE_U300_20240930_Hela_B1	62.088	31.538			22970000	7097900	15872000	255	13	245	499;500;501	471;472	471							2	
GTDVNVFNTILTTR	Unmodified	1549.81	0.81002097	50	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	64.952	64.818	2	1.6445E-09	17618	GX_QE_U300_20240930_Hela_B1	106.01	82.629			0	0	0	256	50	246	502	473	473							1	
GTGASGSFK	Unmodified	810.38718	0.38718187	84	P22492;P16403;Q02539;P10412;P16402;P16401	HIST1H1T;HIST1H1C;HIST1H1A;HIST1H1E;HIST1H1D;HIST1H1B	Histone H1t;Histone H1.2;Histone H1.1;Histone H1.4;Histone H1.3;Histone H1.5	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	23.402	23.354	2	3.748E-07	3487	GX_QE_U300_20240930_Hela_A1	111.74	81.07			12476000	4099000	8376700	257	84	247	503;504	474	474							1	
GTGGVDTAAVGGVFDVSNADR	Unmodified	1963.9235	0.92354718	92	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		53.222	53.222	2	2.1692E-07	13692	GX_QE_U300_20240930_Hela_A1	87.566	70.24			3262200	3262200	0	258	92	248	505	475	475							1	
GTIEILSDVQLIK	Unmodified	1427.8235	0.82354577	56	Q8NHW5;P05388	RPLP0P6;RPLP0	60S acidic ribosomal protein P0-like;60S acidic ribosomal protein P0	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		65.768	65.768	2	0.018463	17978	GX_QE_U300_20240930_Hela_A1	77.379	66.856			0	0	0	259	56	249	506	476	476							1	
GTIQVITQGTSLK	Unmodified	1344.7613	0.76127986	21	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	44.143	44.049	2	8.608199999999999E-19	10514	GX_QE_U300_20240930_Hela_B1	117.14	70.746			33138000	16327000	16812000	260	21	250	507;508	477;478	478							2	
GTSISTKPPLTK	Unmodified	1228.7027	0.70270235	145	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		28.553	28.553	3	0.0074495	5151	GX_QE_U300_20240930_Hela_A1	40.725	25.11			0	0	0	261	145	251	509	479	479							1	
GTVEPQLEAR	Unmodified	1098.5669	0.56693715	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	32.283	32.189	2	9.7831E-21	6422	GX_QE_U300_20240930_Hela_B1	129.42	98.735			25786000	9579300	16207000	262	117	252	510;511	480;481	481							2	
GTVVTGTLER	Unmodified	1031.5611	0.56112349	167	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		32.927	32.927	2	0.0052776	6704	GX_QE_U300_20240930_Hela_A1	85.731	44.702			4092600	4092600	0	263	167	253	512	482	482							1	
GVAIGQTSLTASVTNKAGQR	Unmodified	1958.0545	0.054501772	250	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	39.202	39.02	3	2.2325E-11	8814	GX_QE_U300_20240930_Hela_B1	84.493	66.576			0	0	0	264	250	254	513	483	483							1	
GVAINMVTEEDKR	Oxidation (M)	1476.7242	0.72424243	182	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	0	0	1	1	By matching	By MS/MS	1	1	30.602	30.51	3	0.0021887	5792	GX_QE_U300_20240930_Hela_B1	61.212	41.082			8590500	3232900	5357600	265	182	255	514;515	484	484						97	1	
GVDEATIIDILTKR	Unmodified	1542.8617	0.86172219	50	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	68.59	68.473	2	0.0012196	18895	GX_QE_U300_20240930_Hela_B1	79.82	64.158			4965500	0	4965500	266	50	256	516	485	485							1	
GVDEVTIVNILTNR	Unmodified	1541.8413	0.8413211	66	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	70.7	70.591	2	4.281E-07	19666	GX_QE_U300_20240930_Hela_B1	97.214	71.095			6691000	0	6691000	267	66	257	517	486	486							1	
GVIVDKDFSHPQMPK	Oxidation (M)	1712.8556	0.85559095	163	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	32.753	32.564	3	0.0016455	6566	GX_QE_U300_20240930_Hela_B1	44.807	30.649			0	0	0	268	163	258	518	487	487						83	1	
GVNLPGAAVDLPAVSEK	Unmodified	1635.8832	0.88318591	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	54.418	54.322	2	4.4356E-36	13975	GX_QE_U300_20240930_Hela_B1	129.71	100.62			24701000	13450000	11252000	269	100	259	519;520	488;489	489							2	
GVNLPGAAVDLPAVSEKDIQDLK	Unmodified	2348.2587	0.25874047	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	60.281	60.201	3	1.9869E-08	16015	GX_QE_U300_20240930_Hela_B1	67.992	56.016			25551000	4497900	21053000	270	100	260	521;522	490	490							1	
GVTIASGGVLPNIHPELLAK	Unmodified	1985.131	0.13096118	27	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	57.942	57.768	3	0.0072649	15160	GX_QE_U300_20240930_Hela_B1	30.21	26.549			0	0	0	271	27	261	523	491	491							1	
GVVDSEDLPLNISR	Unmodified	1512.7784	0.77838649	75;70	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	53.454	53.357	2	0	13679	GX_QE_U300_20240930_Hela_B1	253.76	0			80277000	38549000	41729000	272	70;75	262	524;525	492;493	493							2	
GVVEVTHDLQK	Unmodified	1223.651	0.65100113	168	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	33.631	33.442	2	7.9312E-05	6897	GX_QE_U300_20240930_Hela_A1	96.342	64.225			7849600	0	7849600	273	168	263	526;527	494;495	494							1	
GVVIVAVIVCILVLAVLGAVLYFLYKK	Unmodified	2931.8003	0.8003019	156	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		10		89.784	89.784	4	0.023422	23900	GX_QE_U300_20240930_Hela_A1	0	0			57971000	57971000	0	274	156	264	528;529;530;531;532;533;534;535;536;537	496;497;498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514	496							19	
GVVPLAGTNGETTTQGLDGLSER	Unmodified	2271.1343	0.13426824	49	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	1	51.682	51.682	2;3	6.3879E-09	13158	GX_QE_U300_20240930_Hela_A1	85.77	75.285			14906000	14906000	0	275	49	265	538;539;540	515;516;517	516							3	
GVVQELQQAISK	Unmodified	1298.7194	0.71941505	138	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	59.794	59.713	2	8.3102E-55	15888	GX_QE_U300_20240930_Hela_B1	152.64	122.38			24078000	8889400	15189000	276	138	266	541;542	518;519	519							2	
GWNWTSGFNK	oFuc(1)HexNAc(1)	1571.6892	0.68923713	105	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		59.595	59.595	2	0.0072465	15879	GX_QE_U300_20240930_Hela_A1	49.5	33.61			3812500	3812500	0	277	105	267	543	520	520				46;47			0	
GYAFIEFASFEDAK	Unmodified	1593.7351	0.73512469	114	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		68.46	68.46	2	0.0045588	18887	GX_QE_U300_20240930_Hela_A1	65.347	49.456			1927400	1927400	0	278	114	268	544	521	521							1	
GYDQFKTVQTER	Unmodified	1470.7103	0.71030693	154	P41221	WNT5A	Protein Wnt-5a	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	33.356	33.261	3	4.2049E-05	6812	GX_QE_U300_20240930_Hela_B1	82.543	75.913			27962000	6732000	21230000	279	154	269	545;546	522	522							1	
GYDVIAQAQSGTGK	Unmodified	1393.6838	0.68375782	182	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	38.858	38.767	2	1.5326999999999998E-138	8717	GX_QE_U300_20240930_Hela_B1	185.3	151.92			70192000	36588000	33604000	280	182	270	547;548	523;524	524							2	
GYEEWLLNEIR	Unmodified	1420.6987	0.69867961	22	O43707;P12814;P35609	ACTN4;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	69.343	69.23	2	0.00020369	19159	GX_QE_U300_20240930_Hela_B1	83.883	54.41			6505100	0	6505100	281	22	271	549	525	525							0	
GYFEYIEENKYSR	Unmodified	1696.7733	0.77330111	203	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	48.547	48.451	2;3	5.7494E-43	12089	GX_QE_U300_20240930_Hela_B1	164.43	145.65			92079000	28729000	63349000	282	203	272	550;551;552;553	526;527	527							2	
GYGFGMVK	Oxidation (M)	873.40547	0.40547447	274	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	0	0	1	0		By MS/MS		1	36.639	36.453	2	0.013567	7923	GX_QE_U300_20240930_Hela_B1	60.294	48.573			0	0	0	283	274	273	554	528	528						128	1	
GYGFVHFETQEAAER	Unmodified	1739.7903	0.79034816	91	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	45.707	45.612	3	0.0090445	11110	GX_QE_U300_20240930_Hela_B1	42.947	26.02			19908000	3896400	16012000	284	91	274	555;556	529	529							1	
GYGYGQGAGTLSTDKGESLGIK	Unmodified	2158.0542	0.054227	116	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	41.825	41.733	3	2.2285000000000002E-41	9724	GX_QE_U300_20240930_Hela_B1	122.01	101.36			27178000	6769100	20409000	285	116	275	557;558	530;531	531							2	
GYISPYFINTSK	Unmodified	1388.6976	0.69761697	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	52.819	52.626	2	2.5533E-42	13449	GX_QE_U300_20240930_Hela_B1	139.43	126.88			60121000	0	60121000	286	86	276	559	532	532							1	
GYKHTLNQIDSVK	Unmodified	1501.7889	0.7888916	8	CON__P12763			yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		29.214	29.214	3	1.3748E-42	5391	GX_QE_U300_20240930_Hela_A1	138.02	125.4		+	4820100	4820100	0	287	8	277	560	533	533							1	
GYLNKDTHDQLSEPSEVR	Unmodified	2086.992	0.99196109	223	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		33.429	33.429	4	0.0026817	6890	GX_QE_U300_20240930_Hela_A1	41.202	26.783			4628900	4628900	0	288	223	278	561	534	534							1	
GYSFSLTTFSPSGK	Unmodified	1477.7089	0.70890994	128	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	58.948	58.864	2	1.2907E-14	15549	GX_QE_U300_20240930_Hela_B1	106.67	86.881			11874000	5294200	6580200	289	128	279	562;563	535;536	536							2	
HAAENPGKYNILGTNTIMDK	Oxidation (M)	2202.0739	0.073916585	203	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	37.92	37.829	3	0.00075797	8399	GX_QE_U300_20240930_Hela_B1	53.059	27.74			17007000	4252300	12755000	290	203	280	564;565	537	537						112	1	
HCECSTDEVNSEDMDAYCR	Oxidation (M)	2392.8301	0.83005878	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	29.286	29.197	3	7.3325E-10	5393	GX_QE_U300_20240930_Hela_B1	91.518	91.204			13247000	5524000	7723300	291	57	281	566;567	538;539	539						22	2	
HELQANCYEEVKDR	Unmodified	1789.8053	0.8053463	125	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	28.59	28.505	3	1.3525999999999998E-87	5132	GX_QE_U300_20240930_Hela_B1	166.09	128.49			20874000	5865700	15008000	292	125	282	568;569	540;541	541							2	
HFCPNVPIILVGNKK	Unmodified	1734.9603	0.9603308	72	P61586;P08134	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	46.379	46.189	3	0.0013052	11276	GX_QE_U300_20240930_Hela_B1	46.282	38.885			0	0	0	293	72	283	570	542	542							1	
HFVALSTNTTK	Unmodified	1217.6404	0.64043645	60	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	30.103	30.011	2	0.0053972	5661	GX_QE_U300_20240930_Hela_A1	74.162	74.162		+	32665000	12849000	19815000	294	60	284	571;572	543	543							1	
HFVGMLPEKDCR	Oxidation (M)	1503.6963	0.69625354	183	P60981	DSTN	Destrin	yes	yes	0	0	0	0	0	0	1	1	By MS/MS		1		28.458	28.458	3	0.0001991	5127	GX_QE_U300_20240930_Hela_A1	87.001	70.061			5231700	5231700	0	295	183	285	573	544	544						98	1	
HGESGSMAVFHQTQGPSYSESKR	Oxidation (M)	2522.1244	0.12444861	103	P15151	PVR	Poliovirus receptor	yes	yes	0	0	0	0	0	0	1	1	By matching	By MS/MS	1	1	26.759	26.679	4	0.0035748	4503	GX_QE_U300_20240930_Hela_B1	44.5	30.872			9131400	2773500	6357900	296	103	286	574;575	545	545						61	1	
HGEVCPAGWKPGSDTIKPDVQK	Unmodified	2405.1798	0.17977864	208	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	1	1	34.787	34.693	4	2.8872E-67	7332	GX_QE_U300_20240930_Hela_B1	138.22	124.5			64593000	18467000	46126000	297	208	287	576;577	546;547	547							2	
HIADLAGNSEVILPVPAFNVINGGSHAGNK	Unmodified	3010.5625	0.56246748	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	62.411	62.263	4	9.2584E-06	16707	GX_QE_U300_20240930_Hela_B1	49.187	40.999			17295000	0	17295000	298	59	288	578	548	548							1	
HIYYITGETK	Unmodified	1223.6186	0.61863837	70	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	33.962	33.868	2	1.9991999999999998E-19	7033	GX_QE_U300_20240930_Hela_B1	122.13	89.815			53229000	23872000	29357000	299	70	289	579;580	549;550	550							2	
HLAGLGLTEAIDKNK	Unmodified	1578.873	0.87295558	168	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	40.468	40.377	3	4.2793E-21	9331	GX_QE_U300_20240930_Hela_B1	115.12	95.853			30989000	8748400	22241000	300	168	290	581;582	551	551							1	
HLEINPDHPIVETLR	Unmodified	1781.9424	0.94243213	75	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	43.776	43.682	3	3.0984999999999996E-50	10428	GX_QE_U300_20240930_Hela_B1	142.1	101.55			22997000	7769200	15228000	301	75	291	583;584	552	552							1	
HLQLAIR	Unmodified	849.51847	0.51847082	81	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;Q93077;Q7L7L0;P04908;Q71UI9;P0C0S5;Q96QV6;P16104	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFV;H2AFZ;HIST1H2AA;H2AFX	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-A;Histone H2AX	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	34.146	34.052	2	4.4187E-32	7195	GX_QE_U300_20240930_Hela_B1	143.18	49.585			188350000	53585000	134770000	302	81	292	585;586	553;554	554							2	
HLTDAYFKK	Unmodified	1121.5869	0.58694431	206	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	30.645	30.46	3	0.0043047	5817	GX_QE_U300_20240930_Hela_B1	55.112	33.648			0	0	0	303	206	293	587	555	555							1	
HLVDEPQNLIK	Unmodified	1304.7089	0.70885036	5	CON__P02769			yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	39.95	39.768	2	2.7103E-22	9067	GX_QE_U300_20240930_Hela_B1	120.68	92.284		+	0	0	0	304	5	294	588	556	556							1	
HQGVMVGMGQKDSYVGDEAQSK	2 Oxidation (M)	2382.058	0.058008524	181;195	P63261;P60709;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	2	1	By MS/MS	By MS/MS	2	2	27.039	26.959	3;4	3.5184E-24	4561	GX_QE_U300_20240930_Hela_B1	107.78	95.495			81907000	42264000	39643000	305	181;195	295	589;590;591;592	557;558;559	559						94;95	3	
HQPTAIIAKTFK	Unmodified	1353.7769	0.77687035	137	P29401	TKT	Transketolase	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	32.26	32.071	3	0.010416	6390	GX_QE_U300_20240930_Hela_B1	38.674	28.622			0	0	0	306	137	296	593	560	560							1	
HRDYETATLSDIK	Unmodified	1547.758	0.7579854	22	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	34.168	33.979	3	0.0021607	7093	GX_QE_U300_20240930_Hela_B1	65.956	35.084			8804700	0	8804700	307	22	297	594	561	561							1	
HTGPGILSMANAGPNTNGSQFFICTAK	Oxidation (M)	2806.3167	0.31668283	191	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		51.3	51.3	3	7.7065E-24	13025	GX_QE_U300_20240930_Hela_A1	98.967	77.734			11842000	11842000	0	308	191	298	595	562	562						103	1	
HTLGENIADNGGLKAAYR	Unmodified	1898.9599	0.9598731	155	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	38.298	38.207	3	2.6511E-07	8576	GX_QE_U300_20240930_Hela_B1	92.439	74.171			18461000	6426100	12035000	309	155	299	596;597	563	563							1	
HYGGLTGLNK	Unmodified	1058.5509	0.55089316	113	P18669;P15259;Q8N0Y7	PGAM1;PGAM2;PGAM4	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		29.883	29.883	2	0.0063631	5608	GX_QE_U300_20240930_Hela_A1	84.498	62.006			6646400	6646400	0	310	113	300	598	564	564							1	
HYGGLTGLNKAETAAK	Unmodified	1629.8475	0.84746911	113	P18669;P15259;Q8N0Y7	PGAM1;PGAM2;PGAM4	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	30.321	30.229	3	0.00012094	5811	GX_QE_U300_20240930_Hela_B1	89.484	66.123			35023000	9750800	25272000	311	113	301	599;600	565;566	566							2	
IECKAYGENIGYSEKDR	Unmodified	2030.9368	0.9367544	55	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	31.914	31.725	3	0.022297	6268	GX_QE_U300_20240930_Hela_B1	22.051	7.6321			0	0	0	312	55	302	601	567	567							1	
IENAWGIR	OFuc(1)HexNAc(1)(N)	1362.6779	0.67794416	266	Q9NZR2	LRP1B	Low-density lipoprotein receptor-related protein 1B	yes	yes	0	0	0	0	0	1	0	0		By MS/MS		1	58.505	58.331	2	0.021945	15341	GX_QE_U300_20240930_Hela_B1	46.566	7.4178			48112000	0	48112000	313	266	303	602	568	568					16		1	
IGAEVYHNLK	Unmodified	1142.6084	0.60840804	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	32.035	31.94	2	0.00097022	6355	GX_QE_U300_20240930_Hela_B1	106.68	69.125			19908000	7225400	12683000	314	59	304	603;604	569;570	570							2	
IGDFSAASLVAPR	Unmodified	1302.6932	0.6932003	279				yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	74.585	74.474	2	0.0076843	20965	GX_QE_U300_20240930_Hela_B1	65.224	39.148	+		7702700	0	7702700	315	279	305	605	571	571							1	
IGDLQAFQGHGAGNLAGLK	Unmodified	1865.9748	0.97479489	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	49.219	49.123	3	2.2848999999999998E-38	12292	GX_QE_U300_20240930_Hela_B1	127.22	103.54			27162000	8847400	18314000	316	74	306	606;607	572	572							1	
IGDLQAFQGHGAGNLAGLKGR	Unmodified	2079.0974	0.097369639	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		2	44.565	44.377	3;4	6.8731000000000005E-62	10633	GX_QE_U300_20240930_Hela_B1	140.06	114.55			63032000	0	63032000	317	74	307	608;609	573;574	574							2	
IGGIGTVPVGR	Unmodified	1024.6029	0.60292873	196	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	40.318	40.227	2	1.35E-05	9187	GX_QE_U300_20240930_Hela_B1	98.033	65.563			30505000	9629800	20875000	318	196	308	610;611	575;576	576							2	
IHFPLATYAPVISAEK	Unmodified	1755.956	0.95595693	197;258	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	0	0	0	0		By MS/MS		1	58.228	58.054	3	0.0069005	15157	GX_QE_U300_20240930_Hela_B1	42.242	32.454			9902000	0	9902000	319	197;258	309	612	577	577							1	
IIAPPER	Unmodified	794.46504	0.46503826	181;195	P63261;P60709;Q562R1;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTBL2;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.765	29.672	2	0.0066278	5534	GX_QE_U300_20240930_Hela_B1	99.384	32.349			18455000	6029000	12426000	320	181;195	310	613;614	578	578							1	
IIGLKPEGVPR	Unmodified	1177.7183	0.71829284	175	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	37.679	37.495	3	0.0013013	8287	GX_QE_U300_20240930_Hela_B1	56.404	41.261			0	0	0	321	175	311	615	579	579							1	
IILYENPNFTGK	OFuc(1)HexNAc(1)(N);oFuc(1)HexNAc(1)	2189.0627	0.062726001	159	P43320	CRYBB2	Beta-crystallin B2	yes	yes	0	0	0	0	1	1	0	0	By MS/MS	By MS/MS	1	2	46.027	45.9	3	0.023422	11151	GX_QE_U300_20240930_Hela_B1	45.077	29.823			241000000	120340000	120660000	322	159	312	616;617;618	580	580				63;64	8;9		1	
IIQQTWNR	oFuc(1)HexNAc(1)	1433.7151	0.71505795	111	P17342	NPR3	Atrial natriuretic peptide receptor 3	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		40.647	40.647	2	0.018993	9434	GX_QE_U300_20240930_Hela_A1	48.283	20.27			20915000	20915000	0	323	111	313	619	581	581				51			1	
IKDPDASKPEDWDER	Unmodified	1799.8326	0.83260691	135	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	32.589	32.4	3	0.0001816	6490	GX_QE_U300_20240930_Hela_B1	81.428	63.921			9776800	0	9776800	324	135	314	620	582	582							1	
IKIIAPPER	Unmodified	1035.6441	0.64406526	181;195	P63261;P60709;Q562R1;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTBL2;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	0	1		By MS/MS		1	34.127	33.939	2	0.019517	7049	GX_QE_U300_20240930_Hela_B1	59.245	26.405			0	0	0	325	181;195	315	621	583	583							1	
IKIIAPPERK	Unmodified	1163.739	0.73902828	181;195	P63261;P60709;Q562R1;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTBL2;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	0	2		By MS/MS		1	28.709	28.538	3	0.0031869	5130	GX_QE_U300_20240930_Hela_B1	65.695	27.883			0	0	0	326	181;195	316	622	584	584							1	
IKVAEDEAEAAAAAK	Unmodified	1485.7675	0.76748745	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	33.254	33.128	2;3	0.0013329	6769	GX_QE_U300_20240930_Hela_A1	45.33	32.97			33973000	4741400	29232000	327	74	317	623;624;625;626	585;586;587;588	586							4	
ILLAELEQLKGQGK	Unmodified	1538.9032	0.90319307	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By matching	1	1	53.105	53.009	2	4.8076E-06	13610	GX_QE_U300_20240930_Hela_A1	91.313	50.586			23916000	6718900	17197000	328	77	318	627;628	589	589							1	
ILLTCSLNDSATEVTGHR	oFuc(1)HexNAc(1)	2362.1322	0.13221932	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	10	13	50.878	50.772	2;3	0	13128	GX_QE_U300_20240930_Hela_A1	245.61	219.17			1955599999.9999998	657880000	1297700000	329	147	319	629;630;631;632;633;634;635;636;637;638;639;640;641;642;643;644;645;646;647;648;649;650;651	590;591;592;593;594;595;596;597;598;599;600;601;602;603;604;605;606;607;608;609;610;611;612;613;614;615;616;617;618;619;620;621;622	601				59			33	
ILLTCSLNDSATEVTGHR	OFuc(1)HexNAc(1)(N)	2391.1588	0.15876843	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	1	0	0	By MS/MS	By MS/MS	1	1	54.545	54.449	3	3.9372E-113	13924	GX_QE_U300_20240930_Hela_B1	170.53	149.57			109370000	22382000	86985000	330	147	319	652;653	623;624;625;626	625					7		4	
ILLTCSLNDSATEVTGHR	O(1)Fuc(1)HexNAc(1)(N)	2332.1217	0.12165464	147	P35613	BSG	Basigin	yes	yes	0	0	1	0	0	0	0	0		By MS/MS		2	46.937	46.745	3	3.1037E-06	11558	GX_QE_U300_20240930_Hela_B1	62.274	50.66			23148000	0	23148000	331	147	319	654;655	627;628	628		1					2	
INATDADEPNTLNSK	oFuc(1)HexNAc(1)	1977.9015	0.90147433	218	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		2		35.847	35.847	2	0.00050935	7751	GX_QE_U300_20240930_Hela_A1	61.038	42.878			6692200	6692200	0	332	218	320	656;657	629;630	629				75			2	
INFDKYHPGYFGK	Unmodified	1584.7725	0.77251325	160	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	42.619	42.435	3	0.0057169	9988	GX_QE_U300_20240930_Hela_B1	80.522	46.837			12594000	0	12594000	333	160	321	658	631	631							1	
INVYYNEATGGK	Unmodified	1327.6408	0.64083038	198	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	38.293	38.201	2	0.0085376	8547	GX_QE_U300_20240930_Hela_B1	69.721	50.244			23930000	5778800	18151000	334	198	322	659;660	632	632							1	
INVYYNEATGGKYVPR	Unmodified	1842.9264	0.92644771	198	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	41.37	41.187	3	6.1241E-07	9536	GX_QE_U300_20240930_Hela_B1	96.303	70.713			6990500	0	6990500	335	198	323	661	633	633							1	
INYTVPQSGTFK	oFuc(1)HexNAc(1)	1729.841	0.84104633	237	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		47.591	47.591	2	0.014161	11804	GX_QE_U300_20240930_Hela_A1	44.188	25.09			3388300	3388300	0	336	237	324	662	634	634				84			1	
ISGLIYEETR	Unmodified	1179.6136	0.61355299	186	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	44.088	43.994	2	4.7753E-37	10506	GX_QE_U300_20240930_Hela_B1	140.75	110.5			34667000	16164000	18503000	337	186	325	663;664	635;636	636							2	
ISVYYNEATGGK	Unmodified	1300.6299	0.62993134	67	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	38.234	38.052	2	1.1337E-42	8482	GX_QE_U300_20240930_Hela_B1	142.83	112.64			15398000	0	15398000	338	67	326	665	637	637							1	
ISVYYNEATGGKYVPR	Unmodified	1815.9155	0.91554867	67	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	41.171	40.988	3	1.4622E-06	9471	GX_QE_U300_20240930_Hela_B1	93.51	71.424			14139000	0	14139000	339	67	327	666	638	638							1	
ITDSEDKALMNGSESR	Oxidation (M);oFuc(1)HexNAc(1)	2143.9427	0.94268722	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	1	0	1	1	By MS/MS	By MS/MS	1	1	32.261	32.166	3	5.1539E-12	6417	GX_QE_U300_20240930_Hela_A1	99.409	81.715			72919000	43417000	29502000	340	147	328	667;668	639;640	639				60		78	2	
IVADKDYSVTANSK	Unmodified	1509.7675	0.76748745	65	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	28.759	28.67	2;3	1.6087E-74	5191	GX_QE_U300_20240930_Hela_A1	160.78	108.5			50771000	20233000	30538000	341	65	329	669;670;671;672	641;642	641							2	
IVHSNWNILNNFHNR	2 O(2)Fuc(1)HexNAc(1)(N);O(1)Fuc(1)HexNAc(1)(N)	2973.4104	0.4104431	265	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	1	2	0	0	0	0		By MS/MS		1	54.842	54.651	3	0.0054901	14140	GX_QE_U300_20240930_Hela_B1	43.813	11.422			96719000	0	96719000	342	265	330	673	643	643		8;9	8;9;10				1	
IWHHTFYNELR	Unmodified	1514.7419	0.74188183	181;195	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P68133;P68032	ACTG1;ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTA1;ACTC1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	no	no	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	2	39.663	39.542	3;4	2.4338999999999998E-126	9025	GX_QE_U300_20240930_Hela_B1	185.77	163.9			112980000	7477300	105500000	343	181;195	331	674;675;676	644;645;646	644							3	
IYVDDGLISLQVK	Unmodified	1461.8079	0.80789571	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	60.869	60.792	2	1.421E-08	16206	GX_QE_U300_20240930_Hela_B1	100.72	66.633			10147000	3687900	6459400	344	100	332	677;678	647;648	648							2	
KDFEDLYTPVNGSIVIVR	oFuc(1)HexNAc(1)	2440.2373	0.23733632	45	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	2	3	61.122	61.045	3	6.5509000000000005E-84	16210	GX_QE_U300_20240930_Hela_B1	154.84	143.9			90531000	20387000	70145000	345	45	333	679;680;681;682;683	649;650;651;652;653;654	651				8			6	
KDFEDLYTPVNGSIVIVR	OFuc(1)HexNAc(1)(N)	2469.2639	0.26388542	45	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	0	1	0	1		By MS/MS		1	63.509	63.367	3	3.1651E-05	17106	GX_QE_U300_20240930_Hela_B1	70.917	62.831			14178000	0	14178000	346	45	333	684	655	655					2		1	
KDLYANTVLSGGTTMYPGIADR	Oxidation (M)	2358.1526	0.15256084	181	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	2	49.209	49.081	2;3	0	12249	GX_QE_U300_20240930_Hela_B1	262.94	239.84			328490000	102320000	226170000	347	181	334	685;686;687	656;657;658;659	658						92	4	
KDTCTQECSYFNITK	oFuc(1)HexNAc(1)	2269.9719	0.97187886	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	2	2	45.06	44.965	3	0.0010244	10766	GX_QE_U300_20240930_Hela_A1	56.304	49.771			84304000	40582000	43722000	348	57	335	688;689;690;691	660;661;662;663	660				11			4	
KESYSIYVYK	Unmodified	1278.6496	0.64960415	64	Q16778;P33778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	38.25	38.159	2	2.4272E-06	8499	GX_QE_U300_20240930_Hela_B1	104.22	53.256			23040000	4732700	18307000	349	64	336	692;693	664	664							1	
KESYSVYVYK	Unmodified	1264.634	0.63395408	25	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	35.159	35.065	2;3	1.0246E-06	7446	GX_QE_U300_20240930_Hela_B1	123.11	91.176			92651000	32711000	59939000	350	25	337	694;695;696;697	665;666;667;668	667							4	
KFNALFAQGNYSEAAK	Unmodified	1757.8737	0.87368386	202	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	43.828	43.641	3	1.7939E-05	10392	GX_QE_U300_20240930_Hela_B1	65.483	40.851			0	0	0	351	202	338	698	669	669							1	
KGCPPDDIENPR	Unmodified	1396.6405	0.6405128	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		25.564	25.564	3	0.020796	4143	GX_QE_U300_20240930_Hela_A1	28.327	8.0233			0	0	0	352	57	339	699	670	670							1	
KGDVVIVLTGWRPGSGFTNTMR	Oxidation (M)	2406.2478	0.24779863	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	1	2		By MS/MS		1	55.731	55.543	3	0.0039292	14447	GX_QE_U300_20240930_Hela_B1	51.469	36.379			11172000	0	11172000	353	100	340	700	671	671						57	1	
KGVNLPGAAVDLPAVSEK	Unmodified	1763.9781	0.97814893	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	47.962	47.866	3	0.01129	11864	GX_QE_U300_20240930_Hela_B1	30.428	18.814			10113000	5296500	4816700	354	100	341	701;702	672;673	673							2	
KHLEINPDHPIVETLR	Unmodified	1910.0374	0.037395144	75	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	38.64	38.549	4	0.0049623	8703	GX_QE_U300_20240930_Hela_B1	35.473	29.932			15086000	4449800	10636000	355	75	342	703;704	674	674							1	
KIDKYTEVLK	Unmodified	1235.7125	0.71253876	153	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	31.561	31.374	3	0.0014647	6144	GX_QE_U300_20240930_Hela_B1	57.225	18.407			0	0	0	356	153	343	705	675	675							1	
KISSDLDGHPVPK	Unmodified	1391.7409	0.74087877	137	P29401	TKT	Transketolase	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		27.307	27.307	3	0.0063896	4689	GX_QE_U300_20240930_Hela_A1	46.481	29.241			4950400	4950400	0	357	137	344	706	676	676							1	
KKNLQYYDISAK	Unmodified	1469.7878	0.78782897	187	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	0	0	0	2	By matching	By MS/MS	1	1	30.392	30.299	3	0.010373	5800	GX_QE_U300_20240930_Hela_B1	49.12	39.726			13039000	3452900	9585700	358	187	345	707;708	677;678	678							2	
KKVEAQLQELQVK	Unmodified	1539.8984	0.89844205	146	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	0	0	0	2	By matching	By MS/MS	1	1	33.013	32.918	3	0.0075789	6730	GX_QE_U300_20240930_Hela_B1	37.525	27.199			8745200	2366600	6378500	359	146	346	709;710	679;680	680							2	
KLDPGSEETQTLVR	Unmodified	1571.8155	0.81550028	134	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		34.713	34.713	3	0.011408	7330	GX_QE_U300_20240930_Hela_A1	28.297	17.027			3552400	3552400	0	360	134	347	711	681	681							1	
KLDYGQHVVAGTPGR	Unmodified	1596.8372	0.83723877	150	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	30.584	30.399	3	0.00024497	5795	GX_QE_U300_20240930_Hela_B1	52.862	43.574			0	0	0	361	150	348	712	682	682							1	
KLVAASQAALGL	Unmodified	1140.6867	0.68665836	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	47.249	47.058	2	0.0076085	11567	GX_QE_U300_20240930_Hela_B1	67.704	58.365		+	14582000	0	14582000	362	4	349	713	683	683							1	
KNGFVVLK	Unmodified	903.55419	0.55418762	193	Q9GZV4;Q6IS14;P63241	EIF5A2;EIF5AL1;EIF5A	Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-1	yes	no	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	33.064	32.969	2	0.017749	6698	GX_QE_U300_20240930_Hela_B1	85.265	17.921			28748000	5653700	23094000	363	193	350	714;715	684	684							1	
KNIMSSR	oFuc(1)HexNAc(1)	1210.5864	0.58635197	251	Q8WXE9	STON2	Stonin-2	yes	yes	0	0	0	0	1	0	0	1		By MS/MS		1	34.757	34.569	2	0.014887	7257	GX_QE_U300_20240930_Hela_B1	51.688	34.592			27276000	0	27276000	364	251	351	716	685	685				93			1	
KPLVIIAEDVDGEALSTLVLNR	Unmodified	2364.3264	0.3264261	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	71.151	71.043	3	1.7111E-54	19754	GX_QE_U300_20240930_Hela_B1	132.83	118.96			15944000	0	15944000	365	86	352	717	686	686							1	
KPVEEYANCHLAR	Unmodified	1585.7671	0.7671103	46	P02787	TF	Serotransferrin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		27.926	27.926	3	0.0014541	4944	GX_QE_U300_20240930_Hela_A1	62.89	41.937			1788500	1788500	0	366	46	353	718	687	687							1	
KQCANLQNAIADAEQR	Unmodified	1828.885	0.8849936	11	CON__Q5XQN5;CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	58.752	58.578	2	0.0060067	15445	GX_QE_U300_20240930_Hela_B1	42.556	20.358		+	0	0	0	367	11	354	719	688	688							1	
KQTALVELVK	Unmodified	1127.6914	0.69140938	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1	By MS/MS		1		37.924	37.924	3	0.021568	8484	GX_QE_U300_20240930_Hela_A1	41.399	25.77		+	7681300	7681300	0	368	4	355	720	689	689							1	
KVESLQEEIAFLKK	Unmodified	1660.94	0.93997251	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	49.449	49.257	3	4.794E-42	12329	GX_QE_U300_20240930_Hela_B1	133.48	116.24			50285000	0	50285000	369	77	356	721	690	690							0	
KVHVIFNYK	Unmodified	1146.655	0.6549643	135	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	33.225	33.13	3	0.0015058	6834	GX_QE_U300_20240930_Hela_B1	88.948	88.948			13077000	2559900	10517000	370	135	357	722;723	691	691							1	
KVIDDTNITR	Unmodified	1173.6354	0.63535107	58	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		28.369	28.369	2	0.0057353	5084	GX_QE_U300_20240930_Hela_A1	67.726	17.686			0	0	0	371	58	358	724	692	692							1	
KVPQVSTPTLVEVSR	Unmodified	1638.9305	0.93047046	4;5	CON__P02768-1;P02768;CON__P02769	ALB	Serum albumin	no	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	41.979	41.887	2	0.0017652	9817	GX_QE_U300_20240930_Hela_B1	61.641	54.244		+	33400000	18773000	14627000	372	4;5	359	725;726	693;694;695	695							3	
KYEDICPSTHNMDVPNIK	Oxidation (M)	2175.9929	0.99288907	193	Q9GZV4;Q6IS14;P63241	EIF5A2;EIF5AL1;EIF5A	Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-1	yes	no	0	0	0	0	0	0	1	1	By MS/MS		1		34.767	34.767	3	0.0010181	7351	GX_QE_U300_20240930_Hela_A1	52.784	40.158			8882400	8882400	0	373	193	360	727	696	696						105	1	
LADKYPVVHIGKR	Unmodified	1494.8671	0.86708234	15	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	31.289	31.101	4	0.00041636	6059	GX_QE_U300_20240930_Hela_B1	80.522	71.09			9337200	0	9337200	374	15	361	728	697;698	698							2	
LAPITSDPTEATAVGAVEASFK	Unmodified	2174.1107	0.11067925	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	64.837	64.701	2	3.8761E-05	17578	GX_QE_U300_20240930_Hela_B1	46.408	32.746			0	0	0	375	100	362	729	699	699							1	
LAQANGWGVMVSHR	Oxidation (M)	1540.7569	0.75687996	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	1	0		By MS/MS		1	36.994	36.81	2	0.012237	8052	GX_QE_U300_20240930_Hela_B1	51.013	19.828			4313500	0	4313500	376	59	363	730	700	700						27	1	
LATQSNEITIPVTFESR	Unmodified	1904.9844	0.98435652	53	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	56.948	56.858	2	3.0465E-12	14852	GX_QE_U300_20240930_Hela_B1	105.03	83.656			9289600	3411800	5877800	377	53	364	731;732	701;702	702							2	
LCTVATLR	Unmodified	932.51134	0.51133653	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	35.432	35.338	2	8.3519E-34	7488	GX_QE_U300_20240930_Hela_B1	143.85	102.55		+	162510000	93704000	68807000	378	4	365	733;734	703	703							1	
LCYVALDFEQEMATAASSSSLEK	Unmodified	2549.1666	0.16655592	181	P63261;P60709;Q6S8J3	ACTG1;ACTB;POTEE	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	72.892	72.82	2;3	3.1508E-33	20413	GX_QE_U300_20240930_Hela_B1	156.5	127.17			56950000	2475600	54474000	379	181	366	735;736;737	704;705	705							2	
LDKSQIHDIVLVGGSTR	Unmodified	1837.0058	0.005760665	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	43.62	43.435	3	0.0014574	10313	GX_QE_U300_20240930_Hela_B1	61.102	48.542			5646800	0	5646800	380	88	367	738	706	706							1	
LEGLTDEINFLR	Unmodified	1418.7405	0.74054442	6	P05787;CON__P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	65.416	65.351	2	7.035800000000001E-33	17830	GX_QE_U300_20240930_Hela_B1	135.86	95.857		+	9432700	2406300	7026400	381	6	368	739;740	707;708	708							2	
LETKYPVVSDGKR	Unmodified	1490.8093	0.80929269	205	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	0	0	0	2	By MS/MS		1		28.658	28.658	3	0.0025663	5201	GX_QE_U300_20240930_Hela_A1	58.487	37.646			1928900	1928900	0	382	205	369	741	709	709							1	
LFDQAFGLPR	Unmodified	1162.6135	0.61349341	53	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	59.123	59.04	2	0.012232	15595	GX_QE_U300_20240930_Hela_B1	46.129	23.676			12379000	3501800	8877700	383	53	370	742;743	710	710							0	
LFIGGLSFETTDESLR	Unmodified	1783.8992	0.89922991	80	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	67.667	67.545	2	7.0354E-05	18570	GX_QE_U300_20240930_Hela_B1	72.089	47.166			0	0	0	384	80	371	744	711	711							1	
LFIGGLSFETTEESLR	Unmodified	1797.9149	0.91487997	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	67.541	67.541	2	3.1747E-11	18696	GX_QE_U300_20240930_Hela_B1	103.75	68.651			2852300	2852300	0	385	120	372	745;746	712;713	713							2	
LFQECCPHSTDR	Unmodified	1548.6449	0.64494625	185	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	29.012	28.922	3	2.1273E-08	5269	GX_QE_U300_20240930_Hela_A1	101.6	88.969			9938800	2943600	6995200	386	185	373	747;748	714	714							1	
LFQNCSELFK	oFuc(1)HexNAc(1)	1660.7654	0.76543854	247	Q8NBN3	TMEM87A	Transmembrane protein 87A	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By matching	2	1	54.216	54.152	2	0.010656	13950	GX_QE_U300_20240930_Hela_A1	55.353	32.711			23446000	14735000	8711000	387	247	374	749;750;751	715;716	715				92			2	
LFTFHADICTLPDTEK	Unmodified	1906.9135	0.91349976	5	CON__P02769			yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		55.023	55.023	3	0.018074	14312	GX_QE_U300_20240930_Hela_A1	20.65	13.449		+	5875500	5875500	0	388	5	375	752	717	717							0	
LFVGGIKEDTEEHHLR	Unmodified	1878.9588	0.95881047	120	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	35.778	35.685	4	3.8039E-12	7686	GX_QE_U300_20240930_Hela_B1	102.38	0			27301000	3123000	24178000	389	120	376	753;754	718	718							1	
LGDGNLDFR	oFuc(1)HexNAc(1)	1381.6361	0.63613893	280				yes	yes	0	0	0	0	1	0	0	0		By MS/MS		1	71.693	71.585	2	0.015647	19942	GX_QE_U300_20240930_Hela_B1	50.966	16.158	+		40785000	0	40785000	390	280	377	755	719	719				106			1	
LGDLYEEEMR	Oxidation (M)	1269.5547	0.55471749	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	1	0		By MS/MS		1	38.91	38.727	2	0.013295	8712	GX_QE_U300_20240930_Hela_B1	44.318	29.297			0	0	0	391	77	378	756	720	720						38	1	
LGDVYVNDAFGTAHR	Unmodified	1633.7849	0.78486885	33	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	46.075	45.98	3	5.3698E-07	11207	GX_QE_U300_20240930_Hela_B1	74.772	46.045			24042000	9204700	14837000	392	33	379	757;758	721	721							1	
LGEYGFQNALIVR	Unmodified	1478.7882	0.78816332	5	CON__P02769			yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	58.086	57.999	2	0.0055793	15350	GX_QE_U300_20240930_Hela_A1	70.908	53.472		+	13678000	5008200	8669400	393	5	380	759;760	722	722							1	
LGGSAVISLEGKPL	Unmodified	1339.7711	0.77111627	125	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		53.703	53.703	2	0.0013273	13846	GX_QE_U300_20240930_Hela_A1	82.261	71.503			4480800	4480800	0	394	125	381	761	723	723							1	
LHEITNETFR	oFuc(1)HexNAc(1)	1634.7788	0.77878042	236	Q6EMK4	VASN	Vasorin	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	39.619	39.528	3	0.005102	9001	GX_QE_U300_20240930_Hela_B1	64.827	37.491			23484000	11176000	12308000	395	236	382	762;763	724	724				83			1	
LHELQEK	Unmodified	895.47633	0.47633123	43	P02647	APOA1	Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	23.233	23.185	2	1.2606E-14	3440	GX_QE_U300_20240930_Hela_A1	122.74	25.14			6744600	4409600	2335000	396	43	383	764;765	725;726	725							2	
LHFFMPGFAPLTSR	Oxidation (M)	1635.8232	0.82316861	198;67	P07437;Q9BUF5;A6NNZ2;P68371;Q9BVA1;Q13885;P04350;Q3ZCM7	TUBB;TUBB6;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB8	Tubulin beta chain;Tubulin beta-6 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-8 chain	no	no	0	0	0	0	0	0	1	0	By matching	By MS/MS	1	1	57.994	57.907	3	0.0001998	15285	GX_QE_U300_20240930_Hela_B1	81.494	62.17			29489000	2362000	27127000	397	67;198	384	766;767	727	727						32	1	
LHTEAQIQEEGTVVELTGR	Unmodified	2109.0702	0.070211415	36	P01023	A2M	Alpha-2-macroglobulin	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	45.419	45.23	3	1.1538E-140	10920	GX_QE_U300_20240930_Hela_B1	178.06	161.29			39838000	0	39838000	398	36	385	768	728	728							1	
LIAPVAEEEATVPNNK	Unmodified	1693.8887	0.88866522	65	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	42.764	42.671	2	0.0014511	10061	GX_QE_U300_20240930_Hela_B1	72.089	36.145			21357000	7106600	14250000	399	65	386	769;770	729	729							1	
LIFAGKQLEDGR	Unmodified	1345.7354	0.73539946	82	P62987;P62979;P0CG47;P0CG48	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	41.387	41.204	3	0.0040043	9560	GX_QE_U300_20240930_Hela_B1	47.062	29.076			0	0	0	400	82	387	771	730	730							1	
LISQIVSSITASLR	Unmodified	1486.8719	0.87189295	197;258	P68363;P68366;Q9H853;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA4B;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	76.481	76.481	2	1.202E-14	21631	GX_QE_U300_20240930_Hela_A1	107.18	75.804			6445200	6445200	0	401	197;258	388	772;773	731;732	731							2	
LISWYDNEFGYSNR	Unmodified	1762.7951	0.79509919	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	60.86	60.783	2	0	16228	GX_QE_U300_20240930_Hela_B1	253.76	235.94			42651000	5532400	37119000	402	51	389	774;775	733	733							1	
LKECCEKPLLEK	Unmodified	1545.7895	0.78948522	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	2		By MS/MS		2	27.019	26.859	3;4	0.0038288	4520	GX_QE_U300_20240930_Hela_B1	62.891	29.153		+	24033000	0	24033000	403	4	390	776;777	734;735	734							2	
LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR	Unmodified	4278.9775	0.97754845	102	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	0	0	0	2	By MS/MS		1		30.017	30.017	6	2.4762E-41	5660	GX_QE_U300_20240930_Hela_A1	84.972	68.306			11366000	11366000	0	404	102	391	778	736	736							1	
LKVTEGGEPYR	Unmodified	1247.651	0.65100113	220	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	29.118	29.029	3	2.0201E-37	5303	GX_QE_U300_20240930_Hela_B1	122.55	99.51			6046500	1671400	4375100	405	220	392	779;780	737	737							1	
LLASKSLLNR	Unmodified	1113.687	0.68699271	158	P43308	SSR2	Translocon-associated protein subunit beta	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	35.973	35.788	2	0.00053776	7699	GX_QE_U300_20240930_Hela_B1	66.621	41.699			8569100	0	8569100	406	158	393	781	738	738							0	
LLDILHKDSSLGLSK	Unmodified	1637.9352	0.93522148	14	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	70.548	70.438	2	0.0049256	19575	GX_QE_U300_20240930_Hela_B1	46.606	14			0	0	0	407	14	394	782	739	739							1	
LLLPGELAKHAVSEGTK	Unmodified	1761.9989	0.99888437	25;64	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	45.713	45.619	3;4	0.0031399	11090	GX_QE_U300_20240930_Hela_B1	41.86	28.447			70344000	11620000	58724000	408	25;64	395	783;784;785;786	740;741	740							1	
LLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSK	Unmodified	4257.3235	0.32353634	199	P69905	HBA1	Hemoglobin subunit alpha	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	95.128	95.059	6	1.5863E-09	28010	GX_QE_U300_20240930_Hela_B1	47.795	42.84			14034000	0	14034000	409	199	396	787	742	742							0	
LNFSHGTHEYHAETIK	Unmodified	1882.8962	0.89621022	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	3	3	29.724	29.631	3;4;5	1.9288E-18	5592	GX_QE_U300_20240930_Hela_B1	111.78	77.389			124530000	36607000	87918000	410	100	397	788;789;790;791;792;793	743;744;745;746;747	744							5	
LPENLSSK	Fuc(O)	1278.6191	0.61909188	230	Q3T906	GNPTAB	N-acetylglucosamine-1-phosphotransferase subunits alpha/beta;N-acetylglucosamine-1-phosphotransferase subunit alpha;N-acetylglucosamine-1-phosphotransferase subunit beta	yes	yes	0	1	0	0	0	0	0	0		By MS/MS		1	43.309	43.123	2	0.0017359	10207	GX_QE_U300_20240930_Hela_B1	98.299	35.476			11437000	0	11437000	411	230	398	794	748	748	1						1	
LPLQDVYKIGGIGTVPVGR	Unmodified	1981.136	0.13604656	196	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	58.704	58.53	3	0.0016115	15429	GX_QE_U300_20240930_Hela_B1	38.017	33.213			0	0	0	412	196	399	795	749	749							1	
LQAEIEGLKGQR	Unmodified	1340.7412	0.74121312	6	P05787;CON__P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	34.562	34.373	3	1.9647E-16	7199	GX_QE_U300_20240930_Hela_B1	117.98	86.545		+	0	0	0	413	6	400	796	750	750							1	
LQEKEDLQELNDR	Unmodified	1628.8006	0.8005785	42	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	34.38	34.286	3	1.1087E-95	7186	GX_QE_U300_20240930_Hela_B1	146.96	112.27			22359000	6135500	16223000	414	42	401	797;798	751	751							1	
LQQDVLQFQKNQTNLER	oFuc(1)HexNAc(1)	2477.2398	0.23979594	246	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	1	1	45.752	45.657	3	1.9016E-12	11142	GX_QE_U300_20240930_Hela_A1	103.26	84.188			44993000	21018000	23976000	415	246	402	799;800	752;753	752				90;91			2	
LQTMKEELDFQK	Oxidation (M)	1524.7494	0.74939455	42	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	34.495	34.401	3	0.00074245	7214	GX_QE_U300_20240930_Hela_B1	78.324	47.76			15830000	6949800	8880600	416	42	403	801;802	754	754						16	1	
LRENELTYYCCKK	Unmodified	1775.8335	0.8334753	96	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	1	2	32.586	32.46	3;4	1.6E-06	6538	GX_QE_U300_20240930_Hela_B1	95.631	84.017			94979000	24757000	70222000	417	96	404	803;804;805	755;756;757	756							3	
LRNPCTSEQNCTSPFSYK	oFuc(1)HexNAc(1)	2564.1159	0.11591733	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	1	0	0	1	By MS/MS		1		41.525	41.525	3	5.6453E-05	9752	GX_QE_U300_20240930_Hela_A1	58.904	47.642			9041500	9041500	0	418	57	405	806	758	758				12;13			1	
LSAVNSIFLSHNNTK	oFuc(1)HexNAc(1)	2020.0113	0.011299553	164	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		49.201	49.201	3	0.0035867	12344	GX_QE_U300_20240930_Hela_A1	49.298	24.818			11297000	11297000	0	419	164	406	807	759	759				66			1	
LSEGVTISYK	Unmodified	1095.5812	0.58119023	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	39.101	39.01	2	0.013322	8809	GX_QE_U300_20240930_Hela_B1	66.568	42.413			15899000	7538700	8360200	420	57	407	808;809	760	760							1	
LSGSNPYTTVTPQIINSK	Unmodified	1919	6.5851E-06	22	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		47.883	47.883	2	2.0648E-05	11898	GX_QE_U300_20240930_Hela_A1	58.21	45.01			0	0	0	421	22	408	810	761	761							1	
LTCLQNLK	Unmodified	988.53755	0.53755128	73	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	36.712	36.527	2	0.018154	7949	GX_QE_U300_20240930_Hela_B1	76.134	54.606			0	0	0	422	73	409	811	762	762							1	
LTHLHEGLPVK	Unmodified	1242.7085	0.70845643	15	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.699	29.52	3	0.00093234	5464	GX_QE_U300_20240930_Hela_B1	85.288	61.199			19294000	0	19294000	423	15	410	812;813	763;764	764							2	
LTKIICAQQCSGR	Unmodified	1533.7756	0.77556649	32	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	28.365	28.279	3	1.6746E-222	5057	GX_QE_U300_20240930_Hela_A1	218.11	184.88			19983000	8870000	11113000	424	32	411	814;815	765;766	765							2	
LTSCATNASICGDEAR	oFuc(1)HexNAc(1)	2100.894	0.89396289	210	Q07954	LRP1	Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		37.444	37.444	2	0.0013208	8307	GX_QE_U300_20240930_Hela_A1	52.522	33.742			6783100	6783100	0	425	210	412	816	767	767				69			1	
LVAASQAALGL	Unmodified	1012.5917	0.59169534	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	55.542	55.448	2	0.00077523	14354	GX_QE_U300_20240930_Hela_B1	89.296	69.509		+	162150000	53400000	108750000	426	4	413	817;818	768	768							1	
LVIITAGAR	Unmodified	912.57565	0.57565135	31	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	40.931	40.748	2	0.01239	9400	GX_QE_U300_20240930_Hela_B1	85.212	26.231			9563400	0	9563400	427	31	414	819	769	769							1	
LVINGNPITIFQERDPSK	Unmodified	2040.1004	0.10038933	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	58.971	58.887	3	0.00059762	15599	GX_QE_U300_20240930_Hela_A1	70.584	51.261			28477000	5628500	22849000	428	51	415	820;821	770;771	770							2	
LVKPGNQNTQVTEAWNK	Unmodified	1925.9959	0.99592426	273	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	34.696	34.602	3	9.0644E-07	7276	GX_QE_U300_20240930_Hela_B1	74.12	62.143			21993000	5105500	16887000	429	273	416	822;823	772;773	773							2	
LVNEVTEFAK	Unmodified	1148.6077	0.60773933	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	43.818	43.724	2	3.0832E-14	10400	GX_QE_U300_20240930_Hela_B1	120.99	91.572		+	231730000	128920000	102810000	430	4	417	824;825	774	774							1	
LVQAEYWHDPIKEDVYR	Unmodified	2160.064	0.064003825	169	P50897	PPT1	Palmitoyl-protein thioesterase 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	47.258	47.067	4	0.0013024	11573	GX_QE_U300_20240930_Hela_B1	51.495	26.56			16037000	0	16037000	431	169	418	826	775	775							1	
LVQAFQFTDK	Unmodified	1195.6237	0.62372375	208	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	49.326	49.23	2	0.00067317	12319	GX_QE_U300_20240930_Hela_B1	93.649	68.726			14586000	6767100	7818500	432	208	419	827;828	776	776							1	
LVQDVANNTNEEAGDGTTTATVLAR	Unmodified	2559.2413	0.2412525	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		43.105	43.105	3	0.00077854	10285	GX_QE_U300_20240930_Hela_A1	47.38	37.041			7841100	7841100	0	433	86	420	829	777	777							1	
LVRPEVDVMCTAFHDNEETFLK	Unmodified	2649.2567	0.25670833	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	57.98	57.893	3;4	2.8057E-151	15296	GX_QE_U300_20240930_Hela_B1	183.42	130.6		+	211210000	4892300	206320000	434	4	421	830;831;832;833	778;779;780;781	780							4	
LVRPEVDVMCTAFHDNEETFLKK	Unmodified	2777.3517	0.35167135	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	2		By MS/MS		1	54.408	54.217	4	1.5015E-09	13945	GX_QE_U300_20240930_Hela_B1	69.947	51.352		+	36830000	0	36830000	435	4	422	834	782	782							1	
LVSSPCRIVTSTYS	Unmodified	1568.7868	0.78684269	231	Q58FF6	HSP90AB4P	Putative heat shock protein HSP 90-beta 4	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		32.026	32.026	3	0.00042296	6377	GX_QE_U300_20240930_Hela_A1	41.644	2.4255			0	0	0	436	231	423	835	783	783							1	
LYHSEAFTVNFGDTEEAK	Unmodified	2056.9378	0.93780026	35	P01009	SERPINA1	Alpha-1-antitrypsin;Short peptide from AAT	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	49.287	49.095	3	9.2715E-06	12283	GX_QE_U300_20240930_Hela_B1	86.488	64.708			12416000	0	12416000	437	35	424	836	784	784							1	
LYHSEAFTVNFGDTEEAKK	Unmodified	2185.0328	0.032763277	35	P01009	SERPINA1	Alpha-1-antitrypsin;Short peptide from AAT	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		2	44.466	44.279	3;4	8.008E-15	10594	GX_QE_U300_20240930_Hela_B1	103.88	83.871			76642000	0	76642000	438	35	425	837;838	785;786	785							2	
LYTLVTYVPVTTFK	Unmodified	1643.9174	0.91744615	189	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	65.822	65.691	2	4.089E-21	17923	GX_QE_U300_20240930_Hela_B1	114.86	92.989			8865300	0	8865300	439	189	426	839	787	787							1	
MDPNCSCAAGDSCTCAGSCK	Acetyl (Protein N-term);Oxidation (M)	2265.7523	0.7523425	47	P02795	MT2A	Metallothionein-2	yes	yes	1	0	0	0	0	0	1	0	By MS/MS		2		29.238	29.238	2;3	1.0295E-38	5379	GX_QE_U300_20240930_Hela_A1	124.92	124.92			26570000	26570000	0	440	47	427	840;841	788;789	789						18	2	
MDPNCSCATGGSCTCAGSCK	Acetyl (Protein N-term);Oxidation (M)	2237.7574	0.75742788	52	P04732	MT1E	Metallothionein-1E	yes	yes	1	0	0	0	0	0	1	0	By MS/MS		1		28.411	28.411	3	4.1644E-05	5109	GX_QE_U300_20240930_Hela_A1	78.794	41.682			4343700	4343700	0	441	52	428	842	790	790						21	0	
MELENIR	Oxidation (M);O(2)Fuc(1)HexNAc(1)(N)	1294.6075	0.60748134	255	Q99418	CYTH2	Cytohesin-2	yes	yes	0	0	0	1	0	0	1	0		By MS/MS		1	32.229	32.04	2	0.022351	6356	GX_QE_U300_20240930_Hela_B1	41.302	8.8318			20067000	0	20067000	442	255	429	843	791	791			7			123	1	
MELQQVEGLKK	Oxidation (M)	1317.6962	0.69623677	254	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	43.035	42.849	2	0.0017559	10122	GX_QE_U300_20240930_Hela_B1	67.993	36.058			0	0	0	443	254	430	844	792	792						122	1	
MIWEEQNTEDQYK	O(2)Fuc(1)HexNAc(1)(N)	2087.8994	0.89936584	249	Q8TA94	ZNF563	Zinc finger protein 563	yes	yes	0	0	0	1	0	0	0	0		By MS/MS		1	54.747	54.556	2	0.0088596	14071	GX_QE_U300_20240930_Hela_B1	50.675	14.716			18367000	0	18367000	444	249	431	845	793	793			6				1	
MKETAEAYLGKK	Unmodified	1367.7119	0.71188683	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	28.157	27.986	3	0.0072791	4942	GX_QE_U300_20240930_Hela_B1	51.013	32.237			3289600	0	3289600	445	87	432	846	794	794							1	
MPCAEDYLSVVLNQLCVLHEK	Oxidation (M)	2533.2015	0.20150164	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	79.177	79.099	3	4.8423E-07	22655	GX_QE_U300_20240930_Hela_B1	68.49	54.526		+	13041000	1325300	11716000	446	4	433	847;848	795	795						3	1	
MPCAEDYLSVVLNQLCVLHEK	Unmodified	2517.2066	0.20658702	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	81.919	81.73	3	1.4072E-182	23499	GX_QE_U300_20240930_Hela_B1	200.45	191.52		+	71913000	0	71913000	447	4	433	849	796	796							1	
MPCTEDYLSLILNR	Oxidation (M)	1739.8222	0.82224192	5	CON__P02769			yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		70.03	70.03	2	0.001571	19404	GX_QE_U300_20240930_Hela_A1	78.096	61.872		+	9901600	9901600	0	448	5	434	850	797	797						5	1	
MQKEITALAPSTMK	2 Oxidation (M)	1579.795	0.79496453	181;195	P63261;P60709;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	2	1		By MS/MS		1	31	30.812	3	0.00074462	5943	GX_QE_U300_20240930_Hela_B1	85.976	64.604			0	0	0	449	181;195	435	851	798	798						93;96	1	
MSATFIGNSTAIQELFKR	Oxidation (M)	2029.0303	0.030260856	198	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	0	0	0	1	1		By MS/MS		1	62.633	62.485	3	1.3871000000000002E-35	16794	GX_QE_U300_20240930_Hela_B1	125.12	18.968			11689000	0	11689000	450	198	436	852	799;800	799						111	2	
MSMKEVDEQMLNVQNK	3 Oxidation (M)	1970.8747	0.87474777	198;67	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	0	0	0	3	1	By MS/MS	By MS/MS	1	1	28.367	28.281	3	1.6238E-17	5019	GX_QE_U300_20240930_Hela_A1	106.19	92.157			41463000	23420000	18043000	451	67;198	437	853;854	801	801						31;33;34	1	
MSVINFECNKTAGNDGK	Oxidation (M);oFuc(1)HexNAc(1)	2275.9937	0.99367693	90	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	1	0	1	1	By MS/MS	By MS/MS	2	1	41.378	41.317	3	0.0017961	9358	GX_QE_U300_20240930_Hela_B1	43.497	31.883			44553000	28163000	16390000	452	90	438	855;856;857	802;803;804	804				37;38;39		51	3	
MTDQEAIQDLWQWR	Oxidation (M)	1834.8308	0.83083277	61	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	0	0	1	0		By MS/MS		1	68.526	68.409	2	3.5918E-10	18879	GX_QE_U300_20240930_Hela_B1	100.72	88.161			5710700	0	5710700	453	61	439	858	805	805						28	1	
MVNDAEKFAEEDKK	Oxidation (M)	1668.7665	0.76650118	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	0	0	1	2	By MS/MS	By MS/MS	1	1	27.515	27.435	4	0.0010123	4748	GX_QE_U300_20240930_Hela_A1	59.248	42.693			8142200	1912900	6229300	454	87	440	859;860	806;807	806						45	2	
MVQEAEKYKAEDEVQR	Oxidation (M)	1967.9259	0.92585536	83	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	0	0	0	1	2	By MS/MS		1		26.139	26.139	3	0.00078764	4321	GX_QE_U300_20240930_Hela_A1	64.136	49.978			3934100	3934100	0	455	83	441	861	808	808						41	1	
MVVESAYEVIK	Oxidation (M)	1282.6479	0.64788959	65	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	43.429	43.336	2	0.0064743	10277	GX_QE_U300_20240930_Hela_B1	70.908	45.736			17863000	9745400	8117700	456	65	442	862;863	809	809						30	1	
MYLGYEYVTAIR	Unmodified	1477.7275	0.72753689	46	P02787	TF	Serotransferrin	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	59.906	59.739	2	1.1964E-32	15837	GX_QE_U300_20240930_Hela_B1	134.59	107.48			13899000	0	13899000	457	46	443	864	810	810							1	
NACCSTNTSQEAHKDVSYLYR	oFuc(1)HexNAc(1)	2879.2338	0.23380064	105	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	3	1	37.575	37.529	4	4.6393E-16	8273	GX_QE_U300_20240930_Hela_B1	105.73	95.1			66159000	42192000	23967000	458	105	444	865;866;867;868	811;812;813;814	814				48;49			4	
NASNMEYR	oFuc(1)HexNAc(1)	1359.5613	0.56125943	278	Q9Y639	NPTN	Neuroplastin	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		32.706	32.706	2	0.0049036	6617	GX_QE_U300_20240930_Hela_A1	86.953	51.073			4676500	4676500	0	459	278	445	869	815	815				105			1	
NATGDYK	oFuc(1)HexNAc(1)	1143.4932	0.49316309	215	Q13740	ALCAM	CD166 antigen	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	28.906	28.817	2	0.015419	5237	GX_QE_U300_20240930_Hela_A1	83.647	65.738			26439000	10342000	16096000	460	215	446	870;871	816;817	816				73			2	
NATVVWMK	Oxidation (M);oFuc(1)HexNAc(1)	1339.633	0.63296781	215	Q13740	ALCAM	CD166 antigen	yes	yes	0	0	0	0	1	0	1	0	By MS/MS	By MS/MS	3	3	43.542	43.448	2	0.0043225	10101	GX_QE_U300_20240930_Hela_A1	85.807	65.525			126620000	69463000	57155000	461	215	447	872;873;874;875;876;877	818;819;820;821;822;823;824	818				74		117	7	
NATVVWMKDNIR	Oxidation (M);oFuc(1)HexNAc(1)	1837.888	0.88801329	215	Q13740	ALCAM	CD166 antigen	yes	yes	0	0	0	0	1	0	1	1		By MS/MS		1	41.244	41.061	3	0.00083291	9509	GX_QE_U300_20240930_Hela_B1	55.815	37.677			0	0	0	462	215	448	878	825	825				74		117	1	
NCSFQPER	oFuc(1)HexNAc(1)	1412.5878	0.58780853	18	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	2	1	36.633	36.571	2	0.0061494	7676	GX_QE_U300_20240930_Hela_B1	65.252	47.388			37941000	21663000	16278000	463	18	449	879;880;881	826;827;828	828				3			3	
NDEELNKLLGK	Unmodified	1271.6721	0.67213051	81	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	45.848	45.753	2	1.111E-09	11135	GX_QE_U300_20240930_Hela_B1	111.06	63.99			26118000	8495300	17623000	464	81	450	882;883	829	829							1	
NDTLQEAK	oFuc(1)HexNAc(1)	1293.5936	0.59360541	252	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		30.89	30.89	2	0.016948	5974	GX_QE_U300_20240930_Hela_A1	50.108	22.403			2260400	2260400	0	465	252	451	884	830	830				95			1	
NESTGSLGTQGR	oFuc(1)HexNAc(1)	1581.7118	0.71182307	154	P41221;Q9H1J7	WNT5A;WNT5B	Protein Wnt-5a;Protein Wnt-5b	yes	no	0	0	0	0	1	0	0	0		By MS/MS		1	31.693	31.505	2	0.0041918	6192	GX_QE_U300_20240930_Hela_B1	60.628	41.848			8418700	0	8418700	466	154	452	885	831	831				61			1	
NEYVENRTKSR	O(1)Fuc(1)HexNAc(1)(N)	1740.8279	0.82785588	261	Q9NRP2	CMC2	COX assembly mitochondrial protein 2 homolog	yes	yes	0	0	1	0	0	0	0	2		By MS/MS		1	58.672	58.498	2	0.0025292	15407	GX_QE_U300_20240930_Hela_B1	66.621	26.032			45400000	0	45400000	467	261	453	886	832	832		7					1	
NFPDAFEYNNVSR	oFuc(1)HexNAc(1)	1947.8487	0.8486509	99	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		55.484	55.484	2	0.0014701	14510	GX_QE_U300_20240930_Hela_A1	67.102	46.895			13166000	13166000	0	468	99	454	887	833;834	834				44			2	
NFSDNQLQEGK	Unmodified	1278.584	0.58404378	148	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		32.508	32.508	2	2.2555E-05	6550	GX_QE_U300_20240930_Hela_A1	101.65	72.559			0	0	0	469	148	455	888	835	835							1	
NGSQAFVHWQEPR	oFuc(1)HexNAc(1)	1930.881	0.88095408	141	P30530	AXL	Tyrosine-protein kinase receptor UFO	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By matching	1	1	44.966	44.872	3	0.0020955	10840	GX_QE_U300_20240930_Hela_A1	64.65	46.211			19831000	11871000	7960100	470	141	456	889;890	836;837	836				55			2	
NGVNGTGENGR	OFuc(1)HexNAc(1)(N)	1478.6597	0.65972792	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	1	0	0	By MS/MS	By MS/MS	1	1	30.489	30.397	2	0.021102	5800	GX_QE_U300_20240930_Hela_A1	43.512	23.183			15147000	9788400	5358300	471	57	457	891;892	838	838					3		1	
NHNSLIPR	OFuc(1)HexNAc(1)(N)	1354.6841	0.68409218	242	Q7L1T6	CYB5R4	Cytochrome b5 reductase 4	yes	yes	0	0	0	0	0	1	0	0	By MS/MS		1		46.792	46.792	2	0.021356	11536	GX_QE_U300_20240930_Hela_A1	47.067	21.33			10769000	10769000	0	472	242	458	893	839	839					13		1	
NIIHGSDSVESAEK	Unmodified	1484.7107	0.71070086	107	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	28.683	28.512	3	0.0014745	5121	GX_QE_U300_20240930_Hela_B1	78.373	53.582			0	0	0	473	107	459	894	840	840							1	
NILSVVGTDALK	oFuc(1)HexNAc(1)	1604.8509	0.85088273	20	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	1	0	0	0		By MS/MS		1	60.33	60.169	2	0.0095446	15992	GX_QE_U300_20240930_Hela_B1	49.06	21.923			25416000	0	25416000	474	20	460	895	841	841				4			1	
NLDIERPTYTNLNR	Unmodified	1717.8747	0.87474649	197;258	P68363;P68366;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	0	0	0	0	1		By MS/MS		1	41.865	41.681	3	1.7788999999999997E-21	9707	GX_QE_U300_20240930_Hela_B1	100.54	63.772			19405000	0	19405000	475	197;258	461	896	842	842							1	
NLGTIAKSGTSEFLNK	Unmodified	1678.889	0.88899957	101	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	44.616	44.522	3	0.0050667	10753	GX_QE_U300_20240930_Hela_B1	68.257	27.68			20164000	6512800	13651000	476	101	462	897;898	843	843							1	
NLNNSQSDVVSFR	oFuc(1)HexNAc(1)	1854.8595	0.85954994	76	P08648	ITGA5	Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		46.619	46.619	2	0.00066167	11477	GX_QE_U300_20240930_Hela_A1	92.866	76.292			0	0	0	477	76	463	899	844	844				20			1	
NLQEAEEWYK	Unmodified	1308.5986	0.59863121	77	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	46.817	46.722	2	2.4988E-37	11471	GX_QE_U300_20240930_Hela_B1	143.03	92.994			47125000	6439500	40685000	478	77	464	900;901	845;846	845							2	
NLTEVPTDLPAYVR	oFuc(1)HexNAc(1)	1962.9786	0.97860244	214	Q13641	TPBG	Trophoblast glycoprotein	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		58.954	58.954	2	0.0049466	15613	GX_QE_U300_20240930_Hela_A1	48.112	23.73			4293000	4293000	0	479	214	465	902	847	847				72			1	
NMITGTSQADCAVLIVAAGVGEFEAGISK	Unmodified	2908.431	0.43104388	196	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	89.511	89.32	3	0.00017631	26150	GX_QE_U300_20240930_Hela_B1	45.332	34.993			11115000	0	11115000	480	196	466	903	848;849	849							2	
NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK	2 Oxidation (M)	4488.1914	0.19142932	91	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	0	0	0	2	0	By MS/MS		1		40.988	40.988	4	1.4562E-06	9485	GX_QE_U300_20240930_Hela_A1	41.021	29.28			73994000	73994000	0	481	91	467	904	850	850						52;53	1	
NQLTSNPENTVFDAKR	Unmodified	1832.9017	0.90168952	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	39.351	39.169	3	0.00012477	8887	GX_QE_U300_20240930_Hela_B1	49.559	20.927			13753000	0	13753000	482	87	468	905	851	851							1	
NQVAMNPTNTVFDAKR	Oxidation (M)	1820.8839	0.88393097	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By matching	1	1	35.065	34.972	3	0.00017238	7433	GX_QE_U300_20240930_Hela_A1	62.378	40.747			15043000	5282900	9759700	483	88	469	906;907	852	852						47	1	
NSLTEQNK	oFuc(1)HexNAc(1)	1308.6045	0.60450445	253	Q96ST8	CEP89	Centrosomal protein of 89 kDa	yes	yes	0	0	0	0	1	0	0	0		By MS/MS		1	31.278	31.09	2	0.0025711	6056	GX_QE_U300_20240930_Hela_B1	72.547	45.945			15206000	0	15206000	484	253	470	908	853	853				96			1	
NSNSNVIQVDQSGLGLPSR	oFuc(1)HexNAc(1)	2360.1456	0.1455612	155	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		3		53.512	53.512	2;3	3.4621E-06	13626	GX_QE_U300_20240930_Hela_A1	77.912	67.958			23618000	23618000	0	485	155	471	909;910;911	854;855;856	854				62			3	
NSSYFVEWIPNNVK	Unmodified	1695.8257	0.82567103	198;67	P07437;Q13509;Q9BUF5;P68371;Q9BVA1;Q13885;P04350	TUBB;TUBB3;TUBB6;TUBB4B;TUBB2B;TUBB2A;TUBB4A	Tubulin beta chain;Tubulin beta-3 chain;Tubulin beta-6 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	63.011	62.94	2	2.2557000000000002E-159	16988	GX_QE_U300_20240930_Hela_B1	229.29	195.33			45785000	4875200	40910000	486	67;198	472	912;913	857;858	858							2	
NTNTINNGTQQQAQSMTTTIKPGDDWKK	Oxidation (M)	3135.4891	0.48910412	130	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	0	0	1	2	By MS/MS		1		32.649	32.649	4	4.1142999999999997E-19	6601	GX_QE_U300_20240930_Hela_A1	93.147	85.954			9561600	9561600	0	487	130	473	914	859	859						74	1	
NVLSLTNKGEVFNELVGK	Unmodified	1960.0629	0.062941193	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	57.812	57.725	3	3.589E-35	15203	GX_QE_U300_20240930_Hela_B1	116.82	91.881			45911000	7537500	38373000	488	57	474	915;916	860;861	861							2	
NVLSLTNKGEVFNELVGKQR	Unmodified	2244.2226	0.22262973	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	2	2	53.056	52.959	3;4	1.6185E-107	13590	GX_QE_U300_20240930_Hela_B1	167.63	157.35			65370000	4495400	60874000	489	57	475	917;918;919;920	862;863	863							2	
NVSVAEGK	oFuc(1)HexNAc(1)	1178.5667	0.56666238	267	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	31.911	31.816	2	9.0307E-05	6310	GX_QE_U300_20240930_Hela_A1	104.42	78.616			25297000	14764000	10533000	490	267	476	921;922	864;865	864				100			2	
NYQQNYQNSESGEKNEGSESAPEGQAQQR	Unmodified	3256.3889	0.38893238	194	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		26.796	26.796	3	3.9496000000000004E-281	4516	GX_QE_U300_20240930_Hela_A1	219.55	206.75			132100000	132100000	0	491	194	477	923	866	866							1	
NYTYMAQAVNR	O(2)Fuc(1)HexNAc(1)(N);OFuc(1)HexNAc(1)(N)	2109.9525	0.95246404	234	Q5VU65	NUP210L	Nuclear pore membrane glycoprotein 210-like	yes	yes	0	0	0	1	0	1	0	0	By MS/MS		1		53.653	53.653	2	0.0098496	13822	GX_QE_U300_20240930_Hela_A1	49.368	30.588			9126300	9126300	0	492	234	478	924	867	867			5		10		1	
PMFIVNTNVPR	Oxidation (M)	1302.6754	0.67544174	97	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	0	0	0	1	0	By matching	By MS/MS	1	1	45.157	45.063	2	1.7599E-20	10834	GX_QE_U300_20240930_Hela_B1	122.13	99.395			14517000	2712900	11804000	493	97	479	925;926	868;869	868						55	2	
PTENRNSSR	O(2)Fuc(1)HexNAc(1)(N)	1434.6699	0.66989867	270	Q9UBK2	PPARGC1A	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha	yes	yes	0	0	0	1	0	0	0	1		By MS/MS		1	64.502	64.366	2	0.0072702	17458	GX_QE_U300_20240930_Hela_B1	53.17	20.949			0	0	0	494	270	480	927	870	870			12;13				1	
PTWERRLR	Unmodified	1112.6203	0.62031013	263	Q9NXF8	ZDHHC7	Palmitoyltransferase ZDHHC7	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	79.493	79.337	2	0.010498	22657	GX_QE_U300_20240930_Hela_B1	70.268	0.26917			19976000	0	19976000	495	263	481	928	871	871							1	
PYQYPALTPEQK	Unmodified	1433.7191	0.7190807	49	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	42.26	42.076	2	0.015676	9867	GX_QE_U300_20240930_Hela_B1	75.294	52.464			2745300	0	2745300	496	49	482	929	872	872							0	
QEIQQEK	Unmodified	901.45051	0.45051041	207	Q03001	DST	Dystonin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		23.311	23.311	2	0.0056696	3450	GX_QE_U300_20240930_Hela_A1	100.37	13.088			29781000	29781000	0	497	207	483	930	873	873							1	
QEYDESGPSIVHR	Unmodified	1515.6954	0.69538514	181	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39	ACTG1;ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	32.659	32.565	3	0.0071919	6568	GX_QE_U300_20240930_Hela_A1	54.7	35.429			12651000	4335600	8315100	498	181	484	931;932	874	874							1	
QKGADFLVTEVENGGSLGSK	Unmodified	2035.0222	0.02219859	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		52.155	52.155	3	4.5723E-05	13327	GX_QE_U300_20240930_Hela_A1	50.358	28.801			0	0	0	499	100	485	933	875	875							1	
QLETLGQEK	Unmodified	1044.5451	0.54513908	6	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	30.596	30.504	2	0.018467	5852	GX_QE_U300_20240930_Hela_A1	65.88	23.988		+	9426700	4488500	4938200	500	6	486	934;935	876	876							1	
QLVHSFAEGQDQGSAYANR	oFuc(1)HexNAc(1)	2453.1095	0.10951005	235	Q5ZPR3	CD276	CD276 antigen	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		39.637	39.637	3	5.3314E-06	9093	GX_QE_U300_20240930_Hela_A1	65.175	49.053			11192000	11192000	0	501	235	487	936	877	877				81			1	
QLVLNLTGNTLCAGGASDEK	oFuc(1)HexNAc(1)	2436.169	0.16899876	16	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	58.526	58.442	2;3	9.1249E-06	15568	GX_QE_U300_20240930_Hela_B1	61.409	47.251			20093000	8055400	12038000	502	16	488	937;938	878;879	879				0;1			2	
QNCELFEQLGEYK	Unmodified	1656.7454	0.7453718	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	1	59.991	59.929	2	8.599400000000001E-55	14684	GX_QE_U300_20240930_Hela_B1	147.62	130.68		+	100300000	38317000	61988000	503	4	489	939;940;941	880;881;882	882							3	
QQMENYPKNNHTASILDR	Oxidation (M);oFuc(1)HexNAc(1)	2550.1656	0.16564472	78	P08962	CD63	CD63 antigen	yes	yes	0	0	0	0	1	0	1	1	By MS/MS	By MS/MS	1	1	34.537	34.443	4	8.4484E-05	7226	GX_QE_U300_20240930_Hela_A1	60.768	41.935			36910000	17988000	18922000	504	78	490	942;943	883;884	883				25;26;27		39	2	
QVVESAYEVIK	Unmodified	1263.6711	0.67106787	31	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	43.924	43.83	2	0.019816	10427	GX_QE_U300_20240930_Hela_B1	40.386	17.646			15430000	5547400	9882700	505	31	491	944;945	885	885							0	
REPSLSPKLTCLQNLK	Unmodified	1883.0299	0.029866926	73	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	42.601	42.416	3	0.0039989	9982	GX_QE_U300_20240930_Hela_B1	42.257	22.161			13601000	0	13601000	506	73	492	946	886	886							1	
RFDEILEASDGIMVAR	Oxidation (M)	1836.904	0.90399771	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	53.996	53.805	3	1.5201E-05	13824	GX_QE_U300_20240930_Hela_B1	65.949	41.718			0	0	0	507	100	493	947	887	887						58	1	
RFITTKSNGR	O(1)Fuc(1)HexNAc(1)(N)	1524.7896	0.78961988	243	Q7L985	LINGO2	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2	yes	yes	0	0	1	0	0	0	0	2		By MS/MS		1	60.936	60.782	2	0.016096	16198	GX_QE_U300_20240930_Hela_B1	47.082	20.409			37273000	0	37273000	508	243	494	948	888	888		6					1	
RHPDYSVVLLLR	Unmodified	1466.8358	0.83578221	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	50.876	50.683	3	0.0022324	12793	GX_QE_U300_20240930_Hela_B1	65.179	52.301		+	51188000	0	51188000	509	4	495	949	889;890	889							2	
RMPCAEDYLSVVLNQLCVLHEK	Unmodified	2673.3077	0.30769804	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1		By MS/MS		4	77.729	77.592	3;4	1.1715000000000001E-25	22194	GX_QE_U300_20240930_Hela_B1	113.24	104.22		+	78071000	0	78071000	510	4	496	950;951;952;953	891;892;893;894;895;896;897	895							7	
RPCFSALEVDETYVPK	Unmodified	1909.9244	0.9243988	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	50.326	50.229	2;3	2.2562000000000002E-57	12743	GX_QE_U300_20240930_Hela_B1	115.58	93.71		+	100180000	38944000	61236000	511	4	497	954;955;956;957	898;899;900;901	900							4	
RPCFSALTPDETYVPK	Unmodified	1879.9138	0.91383411	5	CON__P02769			yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		46.173	46.173	3	0.0068469	11319	GX_QE_U300_20240930_Hela_A1	34.954	15.631		+	5707100	5707100	0	512	5	498	958	902	902							1	
RVTIMPK	Oxidation (M)	859.49496	0.49495818	241	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	yes	no	0	0	0	0	0	0	1	1	By MS/MS		1		23.311	23.311	2	0.0056686	3454	GX_QE_U300_20240930_Hela_A1	73.975	31.746			14681000	14681000	0	513	241	499	959	903	903						121	1	
SADTLWGIQK	Unmodified	1117.5768	0.57677356	31	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	48.362	48.266	2	2.071E-48	11992	GX_QE_U300_20240930_Hela_B1	147.19	123.03			25795000	9908900	15886000	514	31	500	960;961	904	904							1	
SALLEFACTHNLGNCSTTAMK	Oxidation (M);oFuc(1)HexNAc(1)	2717.1983	0.19826675	271	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	yes	yes	0	0	0	0	1	0	1	0	By MS/MS	By MS/MS	1	1	52.193	52.096	3	0.00048804	13276	GX_QE_U300_20240930_Hela_A1	53.768	41.791			50382000	25717000	24666000	515	271	501	962;963	905	905				104		127	1	
SANASFNIK	oFuc(1)HexNAc(1)	1326.6303	0.63032527	213	Q13308	PTK7	Inactive tyrosine-protein kinase 7	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	41.496	41.404	2	0.017941	9667	GX_QE_U300_20240930_Hela_A1	49.5	22.986			27462000	11694000	15768000	516	213	502	964;965	906;907	906				70;71			2	
SAYGGPVGAGIR	Unmodified	1103.5724	0.57235688	7	CON__Q3KNV1;CON__P08729;P08729;CON__Q9DCV7	KRT7	Keratin, type II cytoskeletal 7	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	35.629	35.535	2	3.8732E-12	7597	GX_QE_U300_20240930_Hela_B1	107.1	89.829		+	16806000	7999400	8806800	517	7	503	966;967	908	908							1	
SAYVSYDVQKR	Unmodified	1314.6568	0.65681479	262	Q9NUM4	TMEM106B	Transmembrane protein 106B	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		2	30.8	30.612	2;3	0.00064031	5856	GX_QE_U300_20240930_Hela_B1	72.34	51.877			7689800	0	7689800	518	262	504	968;969	909;910	910							2	
SDPTSYAGYIEDLKK	Unmodified	1685.8148	0.81483158	175	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	51.242	51.145	3	0.0004047	12988	GX_QE_U300_20240930_Hela_B1	61.097	48.117			28631000	10342000	18289000	519	175	505	970;971	911;912	912							2	
SEASEGNITVTCR	oFuc(1)HexNAc(1)	1798.7891	0.78908711	227	Q29983	MICA	MHC class I polypeptide-related sequence A	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	37.965	37.873	2	7.744E-05	8472	GX_QE_U300_20240930_Hela_A1	87.498	65.74			25535000	10258000	15277000	520	227	506	972;973	913;914	913				79			2	
SEEKPKEGVK	Acetyl (Protein N-term)	1171.6085	0.60846762	178	P55854	SUMO3	Small ubiquitin-related modifier 3	yes	yes	1	0	0	0	0	0	0	2		By MS/MS		1	31.36	31.172	2	0.008219	6054	GX_QE_U300_20240930_Hela_B1	53.968	19.581			35956000	0	35956000	521	178	507	974	915	915							1	
SEETKENEGFTVTAEGK	Unmodified	1854.8483	0.84831655	37	P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	32.133	31.944	3	0.02063	6339	GX_QE_U300_20240930_Hela_B1	22.874	11.261			18746000	0	18746000	522	37	508	975	916	916							0	
SELHIENLNMEADPGQYR	Oxidation (M)	2130.964	0.96403178	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By matching	1	1	43.727	43.634	3	1.9758E-05	10434	GX_QE_U300_20240930_Hela_A1	65.949	53.182			24695000	10812000	13883000	523	147	509	976;977	917	917						79	1	
SESVPPVTDWAWYK	Unmodified	1663.7882	0.7882229	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	62.165	62.165	2	0.0048603	16783	GX_QE_U300_20240930_Hela_B1	49.5	25.896			8394500	8394500	0	524	147	510	978;979	918;919;920	920							3	
SFQQSSLSR	Unmodified	1038.5094	0.50942227	157	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.132	29.043	2	0.00032561	5313	GX_QE_U300_20240930_Hela_A1	101.64	18.029			7252700	2969500	4283100	525	157	511	980;981	921;922	921							2	
SFYPEEVSSMVLTK	Oxidation (M)	1631.7753	0.77527495	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		52.965	52.965	2	0.004739	13577	GX_QE_U300_20240930_Hela_A1	58.172	41.598			3834200	3834200	0	526	88	512	982	923;924	924						48	2	
SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK	Unmodified	3011.2302	0.2302469	212	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		30.616	30.616	3	9.466E-12	5870	GX_QE_U300_20240930_Hela_A1	46.351	27.632			13548000	13548000	0	527	212	513	983	925	925							1	
SGKYDLDFK	Unmodified	1071.5237	0.52367535	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	37.369	37.277	2	0.020748	8211	GX_QE_U300_20240930_Hela_B1	98.254	59.292			45107000	13904000	31203000	528	59	514	984;985	926	926							1	
SGPKNMTFDLPSDATVVLNR	Oxidation (M);oFuc(1)HexNAc(1)	2553.2268	0.22684799	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	1	0	1	1	By MS/MS	By MS/MS	1	1	55.509	55.415	3	1.1457E-06	14449	GX_QE_U300_20240930_Hela_A1	68.97	58.101			56168000	17353000	38815000	529	89	515	986;987	927;928;929	928				31;32		49	3	
SGPKNMTFDLPSDATVVLNR	Fuc(O)	2553.2268	0.22684799	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	1	0	0	0	0	0	1	By MS/MS		1		56.421	56.421	3	1.2716E-05	14776	GX_QE_U300_20240930_Hela_A1	59.324	46.395			6154500	6154500	0	530	89	515	988	930	930	0						1	
SGSSSSSIPESQSNHSNQSDSGVSDTQPAGHVR	Unmodified	3312.4475	0.4475099	240	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		26.266	26.266	4	0.0069283	4339	GX_QE_U300_20240930_Hela_A1	22.773	16.743			7300800	7300800	0	531	240	516	989	931	931							1	
SGTSEFLNK	Unmodified	981.47673	0.47672516	101	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	33.363	33.174	2	0.011321	6780	GX_QE_U300_20240930_Hela_B1	74.301	53.602			0	0	0	532	101	517	990	932	932							1	
SHCIAEVENDEMPADLPSLAADFVESK	Oxidation (M)	2989.3321	0.3321177	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	1	0		By MS/MS		1	65.839	65.708	3	7.299399999999999E-88	17956	GX_QE_U300_20240930_Hela_B1	147.18	137.26		+	16803000	0	16803000	533	4	518	991	933;934	934						4	2	
SHCIAEVENDEMPADLPSLAADFVESK	Unmodified	2973.3372	0.33720308	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	71.099	71.027	3	1.0123000000000001E-159	19565	GX_QE_U300_20240930_Hela_B1	177.6	167.81		+	137500000	6045800	131460000	534	4	518	992;993;994	935;936;937;938;939;940;941;942	938							8	
SILNAEDSLIIDNKR	Unmodified	1699.9105	0.9104633	248	Q8NCT3	KIAA0895	Uncharacterized protein KIAA0895	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	69.901	69.788	2	0.0075038	19349	GX_QE_U300_20240930_Hela_B1	41.54	18.661			0	0	0	535	248	519	995	943	943							1	
SIQADGLVWGSSK	Unmodified	1346.683	0.68302954	126	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		49.915	49.915	2	1.9602E-05	12576	GX_QE_U300_20240930_Hela_A1	90.685	51.022			7477700	7477700	0	536	126	520	996	944	944							1	
SIQFVDWCPTGFK	Unmodified	1583.7442	0.74424959	197	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		63.986	63.986	2	1.4647E-08	17393	GX_QE_U300_20240930_Hela_A1	100.55	76.399			10292000	10292000	0	537	197	521	997	945	945							1	
SIRPGLSPYR	Unmodified	1144.6353	0.63529149	220	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	32.316	32.126	3	0.0010845	6409	GX_QE_U300_20240930_Hela_B1	62.408	33.49			0	0	0	538	220	522	998	946	946							1	
SIYGEKFEDENFILK	Unmodified	1830.904	0.90398093	191	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	1	54.046	53.982	2;3	4.9649E-05	13907	GX_QE_U300_20240930_Hela_B1	89.992	65.049			79637000	46764000	32873000	539	191	523	999;1000;1001	947;948;949	949							3	
SIYYITGESK	Unmodified	1159.5761	0.57610486	75	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	41.649	41.557	2	0.010737	9658	GX_QE_U300_20240930_Hela_B1	68.456	41.335			38356000	8298700	30058000	540	75	524	1002;1003	950;951	951							2	
SKFADLSEAANR	Unmodified	1307.647	0.64697839	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	34.688	34.594	2	2.9911E-05	7290	GX_QE_U300_20240930_Hela_B1	97.214	77.427			12777000	3113200	9664100	541	77	525	1004;1005	952	952							1	
SLAGSSGPGASSGTSGDHGELVVR	Unmodified	2184.0407	0.040702201	138	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	34.363	34.268	3	4.7065E-11	7170	GX_QE_U300_20240930_Hela_A1	88.222	70.421			31615000	10477000	21138000	542	138	526	1006;1007	953;954	953							2	
SLAQAEAEKQKEEAER	Unmodified	1815.8963	0.8962698	223	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	1	2	26.286	26.189	3;4	0.0014441	4280	GX_QE_U300_20240930_Hela_A1	52.522	37.491			9690700	3135200	6555500	543	223	527	1008;1009;1010	955;956;957	955							3	
SLDLDGIIAEVK	Unmodified	1271.6973	0.69728262	7	CON__Q3KNV1;CON__P08729;P08729	KRT7	Keratin, type II cytoskeletal 7	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	67.572	67.511	2	0.0017796	18578	GX_QE_U300_20240930_Hela_B1	83	56.486		+	10774000	5659400	5114400	544	7	528	1011;1012	958;959	959							2	
SLDLDSIIAEVK	Unmodified	1301.7078	0.70784731	11;12	CON__Q5XQN5;CON__Q922U2;CON__P04264;P04264;CON__Q8BGZ7;CON__P50446	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	0	0	0	0	0	By MS/MS		1		70.655	70.655	2	0.0012547	19660	GX_QE_U300_20240930_Hela_A1	85.355	63.848		+	3850800	3850800	0	545	11;12	529	1013	960	960							1	
SLDMDSIIAEVK	Oxidation (M)	1335.6592	0.65918256	6	P05787;CON__P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	2	1	50.327	50.262	2	1.2139E-24	12653	GX_QE_U300_20240930_Hela_A1	123.79	96.678		+	33939000	24961000	8977900	546	6	530	1014;1015;1016	961;962;963	961						7	3	
SLETENAGLR	Unmodified	1088.5462	0.54620171	42	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	31.844	31.749	2	2.3129E-13	6262	GX_QE_U300_20240930_Hela_A1	114.89	79.014			17751000	6950400	10801000	547	42	531	1017;1018	964;965	964							2	
SLGSVQAPSYGAR	Unmodified	1291.6521	0.65206377	58	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	36.786	36.601	2	1.8116E-68	7986	GX_QE_U300_20240930_Hela_B1	159.83	134.83			8691000	0	8691000	548	58	532	1019;1020	966;967	967							2	
SLHTLFGDK	Unmodified	1016.5291	0.52909508	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	40.331	40.24	2	0.012827	9229	GX_QE_U300_20240930_Hela_B1	68.371	43.448		+	53893000	22248000	31645000	549	4	533	1021;1022	968	968							1	
SLHTLFGDKLCTVATLR	Unmodified	1931.0299	0.029866925	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1		By MS/MS		2	53.715	53.523	3;4	1.2415999999999998E-268	13737	GX_QE_U300_20240930_Hela_B1	228.76	212.4		+	162470000	0	162470000	550	4	534	1023;1024	969;970;971	971							3	
SLKDMEESIR	Oxidation (M)	1222.5864	0.58635197	98	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	27.897	27.811	3	0.00050419	4870	GX_QE_U300_20240930_Hela_A1	89.171	44.479			3840900	2024600	1816200	551	98	535	1025;1026	972;973	972						56	2	
SLTNDWEDHLAVK	Unmodified	1526.7365	0.73652168	75;70	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	0	0	0	0	0		By MS/MS		1	48.499	48.307	2	0.0025603	11996	GX_QE_U300_20240930_Hela_B1	78.692	58.905			10362000	0	10362000	552	70;75	536	1027	974	974							1	
SLVTQYLNATGNR	oFuc(1)HexNAc(1)	1811.8901	0.89012178	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	2	1	55.352	55.289	2	0.0035677	14445	GX_QE_U300_20240930_Hela_A1	55.353	38.327			37174000	28757000	8416700	553	74	537	1028;1029;1030	975;976;977	976				18;19			3	
SLYASSPGGVYATR	Unmodified	1427.7045	0.70449327	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	39.521	39.43	2	1.655E-159	8947	GX_QE_U300_20240930_Hela_B1	196.11	162.99			46768000	15732000	31036000	554	77	538	1031;1032	978;979	979							2	
SLYVSATVILHSGSDMVQAER	Unmodified	2262.1314	0.13143146	37	P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	60.463	60.302	3	1.7361E-06	16044	GX_QE_U300_20240930_Hela_B1	77.287	64.726			19757000	0	19757000	555	37	539	1033	980	980							1	
SMGGKEDLIWELLNQAQEHFGK	Unmodified	2529.2322	0.23220814	46	P02787	TF	Serotransferrin	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	76.959	76.837	4	1.9136E-09	21789	GX_QE_U300_20240930_Hela_B1	68.88	56.32			11391000	0	11391000	556	46	540	1034	981	981							1	
SNFKTCEESSFCKR	Unmodified	1778.7716	0.77160333	220	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	1	1	27.431	27.351	3	2.8172E-05	4696	GX_QE_U300_20240930_Hela_A1	88.974	82.538			36056000	9536200	26519000	557	220	541	1035;1036	982;983	982							2	
SNGLICGGNGVCK	Unmodified	1334.6071	0.60710418	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	32.776	32.682	2	3.7886E-34	6604	GX_QE_U300_20240930_Hela_A1	136.96	111.82			27344000	13389000	13955000	558	57	542	1037;1038	984;985	984							2	
SNGLICGGNGVCKCR	Unmodified	1650.7389	0.73886341	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	28.96	28.781	3	3.2423E-21	5197	GX_QE_U300_20240930_Hela_B1	114.56	95.292			40027000	0	40027000	559	57	543	1039	986	986							1	
SNLDEDIIAEENIVSR	Unmodified	1815.885	0.88503641	37	P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	59.895	59.728	2	4.1964E-05	15845	GX_QE_U300_20240930_Hela_B1	102.28	68.868			0	0	0	560	37	544	1040	987	987							1	
SNMDNMFESYINNLR	2 Oxidation (M)	1878.7876	0.78764732	6	P05787;CON__P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	0	0	2	0	By MS/MS		1		58.272	58.272	2	2.7168E-05	15423	GX_QE_U300_20240930_Hela_A1	87.618	76.454		+	4600600	4600600	0	561	6	545	1041	988;989	989						8;9	2	
SNVSDAVAQSTR	Unmodified	1233.5949	0.59494282	179	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	30.725	30.631	2	3.0437E-54	5859	GX_QE_U300_20240930_Hela_A1	150.59	136.6			20936000	9616100	11320000	562	179	546	1042;1043	990;991	990							2	
SPFSVAVSPSLDLSK	Unmodified	1532.8086	0.80862399	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		57.575	57.575	2	2.6721999999999998E-22	15169	GX_QE_U300_20240930_Hela_A1	120.57	97.887			2833000	2833000	0	563	117	547	1044	992	992							1	
SQIFSTASDNQPTVTIK	Unmodified	1835.9265	0.92650729	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		45.576	45.576	2	0.005511	11115	GX_QE_U300_20240930_Hela_A1	58.071	30.102			3313800	3313800	0	564	87	548	1045	993	993							1	
SQYEQLAEQNRK	Unmodified	1492.727	0.72701962	9	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	0	0	0	1	By MS/MS		1		28.149	28.149	3	0.00078484	5007	GX_QE_U300_20240930_Hela_A1	72.958	50.76		+	0	0	0	565	9	549	1046	994	994							1	
SSASSGPQILKCPEAECFR	Unmodified	2122.9776	0.97757336	76	P08648	ITGA5	Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	43.309	43.123	3	8.5497E-05	10213	GX_QE_U300_20240930_Hela_B1	49.089	36.321			0	0	0	566	76	550	1047	995	995							1	
SSCGKENTSDPSLVIAFGR	oFuc(1)HexNAc(1)	2400.1115	0.11148388	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	7	5	50.874	50.786	3	4.4957E-181	13332	GX_QE_U300_20240930_Hela_A1	198.45	186.76			610190000	275050000	335140000	567	89	551	1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058;1059	996;997;998;999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011;1012	1000				33			17	
SSCGKENTSDPSLVIAFGR	OFuc(1)HexNAc(1)(N)	2429.138	0.13803298	89	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	0	1	0	1	By MS/MS	By MS/MS	1	2	54.907	54.812	3	1.912E-09	14181	GX_QE_U300_20240930_Hela_B1	91.317	77.508			23433000	8301100	15132000	568	89	551	1060;1061;1062	1013;1014;1015	1014					4		3	
SSEHINEGETAMLVCK	Oxidation (M)	1819.808	0.80804841	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	33.366	33.272	3	6.437200000000001E-35	6811	GX_QE_U300_20240930_Hela_B1	126.07	103.29			44495000	25130000	19366000	569	147	552	1063;1064	1016;1017;1018	1018						77	3	
SSEPHGIHNR	Unmodified	1132.5374	0.53736836	281				yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		31.666	31.666	2	0.0076779	6231	GX_QE_U300_20240930_Hela_A1	81.784	8.9946	+		175080000	175080000	0	570	281	553	1065	1019	1019							1	
SSFYVNGLTLGGQK	Unmodified	1469.7514	0.75144346	69	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	53.253	53.157	2	3.0890000000000003E-103	13623	GX_QE_U300_20240930_Hela_B1	172.61	139.25			92144000	31653000	60491000	571	69	554	1066;1067	1020;1021	1021							2	
SSGNAKIGHPAPNFK	Acetyl (Protein N-term)	1565.795	0.79503961	208	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	0	0	0	0	0	1	By MS/MS	By matching	1	1	30.2	30.108	3	0.00037605	5684	GX_QE_U300_20240930_Hela_A1	74.678	54.938			15249000	5535300	9713500	572	208	555	1068;1069	1022	1022							1	
SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK	Oxidation (M)	3718.7129	0.71290906	219	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		2		31.459	31.459	3;4	3.8922999999999995E-93	6153	GX_QE_U300_20240930_Hela_A1	140.73	119.83			85982000	85982000	0	573	219	556	1070;1071	1023;1024;1025;1026	1024						118	4	
SSGPTSLFAVTVAPPGAR	Unmodified	1713.905	0.90498399	203	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		58.33	58.33	2	0.012705	15433	GX_QE_U300_20240930_Hela_A1	42.095	32.142			0	0	0	574	203	557	1072	1027	1027							1	
SSGPYGGGGQYFAKPR	Unmodified	1627.7743	0.77430417	80	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	34.7	34.607	2;3	4.3664E-17	7258	GX_QE_U300_20240930_Hela_B1	87.566	70.164			85050000	36571000	48479000	575	80	558	1073;1074;1075;1076	1028;1029;1030;1031;1032	1030							5	
SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR	Unmodified	3483.6251	0.62508033	151	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		34.278	34.278	4	8.5872E-06	7200	GX_QE_U300_20240930_Hela_A1	41.749	33.148			8229000	8229000	0	576	151	559	1077	1033	1033							0	
STAGDTHLGGEDFDNR	Unmodified	1690.7183	0.71830543	88	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	33.344	33.249	3	1.0524E-17	6794	GX_QE_U300_20240930_Hela_B1	87.287	62.778			24341000	8482100	15859000	577	88	560	1078;1079	1034;1035	1035							2	
STELLIR	Unmodified	830.48617	0.48616764	241	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	39.652	39.561	2	2.6796E-05	8964	GX_QE_U300_20240930_Hela_B1	106.76	44.764			95062000	36432000	58630000	578	241	561	1080;1081	1036	1036							1	
STESLQANVQR	Unmodified	1231.6157	0.61567826	131	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	28.748	28.658	2	6.3328E-38	5165	GX_QE_U300_20240930_Hela_B1	140.5	118.42			15999000	7384200	8614400	579	131	562	1082;1083	1037;1038	1038							2	
STFSTNYR	Unmodified	974.44576	0.44575938	58	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	31.197	31.104	2	2.3993E-11	6055	GX_QE_U300_20240930_Hela_B1	121.52	91.944			20995000	8987500	12007000	580	58	563	1084;1085	1039;1040	1040							2	
STFVLDEFKR	Unmodified	1240.6452	0.64518747	134	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	48.683	48.587	2	0.019565	12108	GX_QE_U300_20240930_Hela_B1	62.823	47.803			10301000	2722000	7579200	581	134	564	1086;1087	1041	1041							1	
STGEAFVQFASQEIAEK	Unmodified	1840.8843	0.88430813	143	P55795;P31943	HNRNPH2;HNRNPH1	Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	62.6	62.526	2	2.3276999999999997E-44	16860	GX_QE_U300_20240930_Hela_B1	131.53	109.39			13827000	4274200	9552600	582	143	565	1088;1089	1042	1042							1	
STGGAPTFNVTVTK	Unmodified	1378.7092	0.70924429	69	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	41.557	41.465	2	7.109E-16	9613	GX_QE_U300_20240930_Hela_B1	113.65	97.77			86540000	34183000	52358000	583	69	566	1090;1091	1043;1044	1044							2	
STSESTAALGCLVK	Unmodified	1422.7024	0.70244436	40	P01859;P01861	IGHG2;IGHG4	Ig gamma-2 chain C region;Ig gamma-4 chain C region	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		44.481	44.481	2	1.4364E-06	10733	GX_QE_U300_20240930_Hela_A1	94.616	77.622			7269200	7269200	0	584	40	567	1092	1045	1045							1	
STSGGTAALGCLVK	Unmodified	1320.6708	0.6707503	39	P01857;P01860	IGHG1;IGHG3	Ig gamma-1 chain C region;Ig gamma-3 chain C region	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	42.822	42.822	2	0.0025063	10170	GX_QE_U300_20240930_Hela_A1	77.379	50.05			11747000	11747000	0	585	39	568	1093;1094	1046;1047	1046							2	
SVETLKEMIK	Oxidation (M)	1192.6373	0.6373249	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	2	2	32.366	32.272	2;3	0.00098823	6447	GX_QE_U300_20240930_Hela_B1	74.944	49.05			96240000	52289000	43951000	586	100	569	1095;1096;1097;1098	1048;1049;1050;1051	1051						59	4	
SVGGSGGGSFGDNLVTR	Unmodified	1565.7434	0.74339797	42	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	42.35	42.166	2	0.0078811	9896	GX_QE_U300_20240930_Hela_B1	48.704	38.472			5815300	0	5815300	587	42	570	1099	1052	1052							1	
SVIPSDGPSVACVK	Unmodified	1414.7126	0.71261511	46	P02787	TF	Serotransferrin	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		40.726	40.726	2	0.0053891	9461	GX_QE_U300_20240930_Hela_A1	60.255	44.816			4956100	4956100	0	588	46	571	1100	1053	1053							1	
SVPTSTVFYPSDGVATEK	Unmodified	1883.9153	0.9152739	137	P29401	TKT	Transketolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		47.218	47.218	2	0.017193	11668	GX_QE_U300_20240930_Hela_A1	39.005	24.129			8649500	8649500	0	589	137	572	1101	1054	1054							1	
SVTEQGAELSNEER	Unmodified	1547.7063	0.70634376	192	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	31.489	31.395	2	0	6140	GX_QE_U300_20240930_Hela_A1	250.51	228.94			35302000	19209000	16093000	590	192	573	1102;1103	1055	1055							1	
SYDVPPPPMEPDHPFYSNISK	Oxidation (M)	2432.0995	0.099462633	113	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	0	0	0	0	0	0	1	0		By MS/MS		1	46.58	46.39	3	0.0011114	11344	GX_QE_U300_20240930_Hela_B1	49.089	38.807			9309300	0	9309300	591	113	574	1104	1056	1056						69	1	
SYELPDGQVITIGNER	Unmodified	1789.8846	0.88464248	181;195	P63261;P60709;Q6S8J3;Q562R1;A5A3E0;Q9BYX7;P68133;P68032;P63267;P62736	ACTG1;ACTB;POTEE;ACTBL2;POTEF;POTEKP;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Beta-actin-like protein 2;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	1	58.46	58.402	2;3	0	15468	GX_QE_U300_20240930_Hela_B1	255.15	217.72			210910000	84362000	126550000	592	181;195	575	1105;1106;1107	1057;1058;1059;1060;1061;1062;1063	1063							7	
SYSTTYEER	Unmodified	1134.4829	0.48293275	225	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	27.849	27.764	2	0.0073557	4855	GX_QE_U300_20240930_Hela_A1	90.657	82.985			28982000	13081000	15901000	593	225	576	1108;1109	1064;1065	1064							2	
TAAENEFVVLKK	Unmodified	1347.7398	0.73981614	7	CON__Q3KNV1;CON__P08729;P08729;CON__Q14CN4-1;CON__Q6IME9;Q14CN4	KRT7;KRT72	Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 72	yes	no	0	0	0	0	0	0	0	1		By MS/MS		1	39.03	38.848	3	0.00093215	8758	GX_QE_U300_20240930_Hela_B1	73.466	7.9038		+	12030000	0	12030000	594	7	577	1110	1066	1066							1	
TAEEMKATESGAQSAPLPMEGVDISPK	2 Oxidation (M)	2805.3048	0.30484032	204	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	0	0	2	1	By MS/MS		1		39.346	39.346	3	4.9878E-08	8975	GX_QE_U300_20240930_Hela_A1	64.701	46.164			8133900	8133900	0	595	204	578	1111	1067	1067						113;114	1	
TALINSTGEEVAMR	Oxidation (M)	1506.7348	0.73480712	42	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		37.355	37.355	2	0.0018308	8293	GX_QE_U300_20240930_Hela_A1	77.062	57.45			4972600	4972600	0	596	42	579	1112	1068	1068						17	1	
TALLDAAGVASLLTTAEVVVTEIPKEEK	Unmodified	2867.5743	0.57432053	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	1	By matching	By MS/MS	1	1	93.473	93.429	3	8.687E-05	27581	GX_QE_U300_20240930_Hela_B1	55.358	49.063			15375000	2041600	13333000	597	86	580	1113;1114	1069	1069							1	
TATESFASDPILYRPVAVALDTK	Unmodified	2464.285	0.28495522	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	62.349	62.275	3	5.1182E-10	16767	GX_QE_U300_20240930_Hela_B1	88.627	69.552			51916000	8797500	43118000	598	100	581	1115;1116	1070;1071	1071							2	
TATESFASDPILYRPVAVALDTKGPEIR	Unmodified	3016.587	0.5869509	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	60.826	60.665	4	8.711100000000001E-25	16169	GX_QE_U300_20240930_Hela_B1	105.17	88.454			22733000	0	22733000	599	100	582	1117	1072	1072							1	
TAVNCSSDFDACLITK	oFuc(1)HexNAc(1)	2176.9504	0.95041513	96	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	9	10	51.859	51.763	2;3	3.1051000000000004E-130	13207	GX_QE_U300_20240930_Hela_B1	182.7	160.74			1566399999.9999998	881340000	685040000	600	96	583	1118;1119;1120;1121;1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136	1073;1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088;1089;1090;1091;1092;1093;1094;1095;1096;1097;1098;1099;1100	1093				43			28	
TAVNCSSDFDACLITK	OFuc(1)HexNAc(1)(N)	2205.977	0.97696424	96	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	0	1	0	0	By MS/MS	By MS/MS	6	2	55.303	55.249	2;3	9.472899999999998E-19	14294	GX_QE_U300_20240930_Hela_A1	113.49	102.67			194950000	121090000	73851000	601	96	583	1137;1138;1139;1140;1141;1142;1143;1144	1101;1102;1103;1104;1105;1106;1107;1108;1109	1102					5		9	
TCDWLPKPNMSASCK	Oxidation (M);oFuc(1)HexNAc(1)	2185.933	0.93299093	68	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	1	0	1	1	By MS/MS	By MS/MS	2	1	44.237	44.237	3	0.00037491	10687	GX_QE_U300_20240930_Hela_A1	62.203	54.078			84855000	84855000	0	602	68	584	1145;1146;1147	1110;1111;1112	1111				15		35	3	
TCVADESAENCDK	Unmodified	1497.5712	0.57117219	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	24.633	24.577	2	0.010732	3821	GX_QE_U300_20240930_Hela_B1	58.676	58.676		+	17571000	908250	16663000	603	4	585	1148;1149	1113	1113							1	
TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR	Unmodified	4037.7985	0.79852145	102	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		2		31.162	31.162	5;6	5.0037000000000005E-171	6021	GX_QE_U300_20240930_Hela_A1	169.96	162.76			98638000	98638000	0	604	102	586	1150;1151	1114;1115;1116	1114							3	
TDYNASVSVPDSSGPER	Unmodified	1779.7911	0.79113602	185	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	37.672	37.58	2	2.7337E-07	8357	GX_QE_U300_20240930_Hela_A1	93.228	79.07			24061000	13237000	10824000	605	185	587	1152;1153	1117;1118	1117							2	
TEADAEKTFEEK	Unmodified	1396.6358	0.63580458	114	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	29.485	29.395	3	3.809E-07	5434	GX_QE_U300_20240930_Hela_A1	99.531	54.449			13105000	6935200	6169400	606	114	588	1154;1155	1119;1120	1119							2	
TEKEPLSDPVGTCYLSTDNFTR	oFuc(1)HexNAc(1)	2905.3175	0.31751349	76	P08648	ITGA5	Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain	yes	yes	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	2	4	53.444	53.328	3	9.5922E-82	13890	GX_QE_U300_20240930_Hela_B1	152.13	133.02			255360000	60716000	194640000	607	76	589	1156;1157;1158;1159;1160;1161	1121;1122;1123;1124;1125;1126;1127;1128;1129;1130	1128				21			10	
TELLNVCMNAK	Oxidation (M)	1307.6214	0.62135726	105	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		39.168	39.168	2	0.0018072	8922	GX_QE_U300_20240930_Hela_A1	57.96	34.403			0	0	0	608	105	590	1162	1131	1131						63	1	
TEMENEFVLIKK	Oxidation (M)	1495.7592	0.75923095	6	P05787;CON__P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	41.454	41.362	3	8.2261E-09	9595	GX_QE_U300_20240930_Hela_B1	104.24	88.106		+	50492000	16239000	34254000	609	6	591	1163;1164	1132	1132						10	1	
TFAPEEISAMVLTK	Oxidation (M)	1551.7854	0.7854457	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		56.837	56.837	2	0.0091261	14912	GX_QE_U300_20240930_Hela_A1	53.967	14.818			3589900	3589900	0	610	87	592	1165	1133	1133						46	1	
TFDQLTPEESKER	Unmodified	1578.7526	0.75256567	23	O43852	CALU	Calumenin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	34.654	34.56	3	0.0019234	7246	GX_QE_U300_20240930_Hela_B1	85.457	63.119			23601000	7663900	15937000	611	23	593	1166;1167	1134	1134							1	
TFIAIKPDGVQR	Unmodified	1343.7561	0.75613491	107	P15531;P22392	NME1;NME2	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	39.699	39.608	2	0.000462	9011	GX_QE_U300_20240930_Hela_B1	95.573	81.056			0	0	0	612	107	594	1168;1169	1135;1136	1136							2	
TFKNESENTCQDVDECQQNPR	oFuc(1)HexNAc(1)	2974.2193	0.21927279	164	P48960;Q9UHX3	CD97;EMR2	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta;EGF-like module-containing mucin-like hormone receptor-like 2	yes	no	0	0	0	0	1	0	0	1	By MS/MS	By MS/MS	2	1	31.766	31.703	3	5.5074E-08	6085	GX_QE_U300_20240930_Hela_B1	87.486	83.645			80627000	57838000	22789000	613	164	595	1170;1171;1172	1137;1138;1139	1139				67;68			3	
TFNTSTGGLLLPSDTKR	Unmodified	1806.9476	0.94757708	93	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		45.734	45.734	3	0.0081116	11167	GX_QE_U300_20240930_Hela_A1	32.995	20.014			5373600	5373600	0	614	93	596	1173	1140	1140							1	
TFTTQETITNAETAK	Unmodified	1654.805	0.80499517	60	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		38.839	38.839	2	6.248099999999999E-40	8807	GX_QE_U300_20240930_Hela_A1	136.93	114.19		+	6254300	6254300	0	615	60	597	1174	1141	1141							1	
TFVNITPAEVGVLVGK	Unmodified	1642.9294	0.92940782	69	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	66.647	66.584	2	3.724E-12	18274	GX_QE_U300_20240930_Hela_B1	134.56	120.14			32597000	7154400	25442000	616	69	598	1175;1176	1142;1143;1144;1145	1145							4	
TFVNITPAEVGVLVGKDR	Unmodified	1914.0575	0.057461884	69	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	61.394	61.316	3	7.4864E-05	16429	GX_QE_U300_20240930_Hela_B1	86.44	80.899			21253000	4317600	16935000	617	69	599	1177;1178	1146;1147;1148	1148							3	
TGVAVNKPAEFTVDAK	Unmodified	1645.8675	0.86753585	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	37.566	37.474	3	9.1232E-18	8262	GX_QE_U300_20240930_Hela_B1	93.152	60.206			47753000	21708000	26045000	618	117	600	1179;1180	1149	1149							1	
THINIVVIGHVDSGK	Unmodified	1587.8733	0.87328993	196	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	40.042	39.951	3	0.00086967	9132	GX_QE_U300_20240930_Hela_B1	63.827	51.2			14771000	2267000	12504000	619	196	601	1181;1182	1150	1150							1	
TIAPALVSK	Unmodified	898.54877	0.54876789	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	36.102	36.01	2	0.016801	7704	GX_QE_U300_20240930_Hela_B1	66.299	36.114			55765000	27512000	28254000	620	59	602	1183;1184	1151	1151							1	
TIAQDYGVLK	Unmodified	1106.5972	0.59717465	208	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	43.509	43.416	2	0.0059393	10318	GX_QE_U300_20240930_Hela_B1	78.149	53.994			29144000	11621000	17523000	621	208	603	1185;1186	1152	1152							1	
TIEKFEKEAAEMGK	Oxidation (M)	1625.7971	0.79707302	196	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	0	0	0	1	2	By MS/MS	By MS/MS	1	1	31.055	30.961	3	0.0005611	6030	GX_QE_U300_20240930_Hela_B1	84.508	50.695			39935000	11124000	28811000	622	196	604	1187;1188	1153;1154	1154						107	2	
TIGGGDDSFNTFFSETGAGK	Unmodified	2006.8858	0.88576469	197;258	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	61.8	61.726	2	5.7845E-38	16561	GX_QE_U300_20240930_Hela_B1	125.53	105.37			39521000	17687000	21833000	623	197;258	605	1189;1190	1155;1156;1157	1156							3	
TIGGGDDSFNTFFSETGAGKHVPR	Unmodified	2496.167	0.16696535	197;258	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	0	0	0	1		By MS/MS		1	52.637	52.444	4	5.2831E-10	13401	GX_QE_U300_20240930_Hela_B1	78.324	60.266			9606800	0	9606800	624	197;258	606	1191	1158	1158							1	
TILPAAAQDVYYR	Unmodified	1479.7722	0.7721789	54	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	50.654	50.461	2	2.9299E-15	12746	GX_QE_U300_20240930_Hela_B1	112.13	69.103			0	0	0	625	54	607	1192	1159	1159							1	
TIQFVDWCPTGFK	Unmodified	1597.7599	0.75989966	258	Q9BQE3;Q9NY65	TUBA1C;TUBA8	Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	64.542	64.474	2	0.002951	17546	GX_QE_U300_20240930_Hela_B1	92.943	66.429			12122000	2738000	9384200	626	258	608	1193;1194	1160;1161	1161							2	
TIQNSSVSPTSSSSSSSSTGETQTQSSSR	Unmodified	2891.2864	0.28642437	244	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		26.751	26.751	3	0.0041491	4507	GX_QE_U300_20240930_Hela_A1	36.756	26.968			8561000	8561000	0	627	244	609	1195	1162;1163	1162							2	
TIVEEVQDGK	Unmodified	1116.5663	0.56626845	10	CON__Q04695;CON__Q9QWL7;Q04695;CON__Q6IFX2	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		35.442	35.442	2	0.004614	7605	GX_QE_U300_20240930_Hela_A1	75.378	47.204		+	8900500	8900500	0	628	10	610	1196	1164	1164							1	
TKFETEQALR	Unmodified	1221.6354	0.63535107	10	CON__Q04695;CON__Q9QWL7;Q04695;CON__P08727;P08727	KRT17;KRT19	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	29.465	29.375	2;3	8.6453E-27	5423	GX_QE_U300_20240930_Hela_A1	131.82	73.119		+	92945000	43873000	49072000	629	10	611	1197;1198;1199;1200	1165;1166;1167;1168	1166							4	
TKSENGLEFTSSGSANTETTK	Unmodified	2188.0132	0.013150046	118	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		31.935	31.935	3	1.6443E-05	6358	GX_QE_U300_20240930_Hela_A1	72.99	56.319			6183600	6183600	0	630	118	612	1201	1169	1169							1	
TLHPDLGTDKDKEQWK	Unmodified	1909.9534	0.95339074	31	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	3	3	31.921	31.826	3;4;5	4.1686E-84	6296	GX_QE_U300_20240930_Hela_B1	160.81	126.12			155530000	33836000	121700000	631	31	613	1202;1203;1204;1205;1206;1207	1170;1171;1172;1173	1172							4	
TLNAGAYSKVVQER	Unmodified	1534.8104	0.81035532	169	P50897	PPT1	Palmitoyl-protein thioesterase 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	36.525	36.339	3	0.00085472	7884	GX_QE_U300_20240930_Hela_B1	87.148	61.763			7079000	0	7079000	632	169	614	1208	1174	1174							1	
TLNDELEIIEGMKFDR	Oxidation (M)	1937.9404	0.9404428	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	1	1	By matching	By MS/MS	1	1	59.887	59.806	3	5.5052E-05	15872	GX_QE_U300_20240930_Hela_B1	84.14	39.952			20069000	4716100	15353000	633	86	615	1209;1210	1175	1175						42	1	
TLSDYNIQK	Unmodified	1080.5451	0.54513908	82	P62987;P62979;P0CG47;P0CG48	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	34.935	34.841	2	0.012987	7365	GX_QE_U300_20240930_Hela_B1	84.568	62.608			21237000	8754600	12483000	634	82	616	1211;1212	1176	1176							1	
TNEKVELQELNDR	Unmodified	1586.79	0.79001381	77	P08670;P17661	VIM;DES	Vimentin;Desmin	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	35.705	35.613	2;3	0	7612	GX_QE_U300_20240930_Hela_B1	217.68	188.34			134480000	42110000	92365000	635	77	617	1213;1214;1215;1216	1177;1178;1179	1178							3	
TNQELQEINR	Unmodified	1243.6157	0.61567826	66	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	31.784	31.784	2	2.3293999999999997E-90	6292	GX_QE_U300_20240930_Hela_A1	174.41	143.33			5725000	5725000	0	636	66	618	1217;1218	1180;1181	1180							2	
TNSTFVQALVEHVKEECDR	oFuc(1)HexNAc(1)	2637.2228	0.22282525	68	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	1	0	0	1		By MS/MS		1	63.464	63.322	4	2.136E-07	17073	GX_QE_U300_20240930_Hela_B1	86.236	69.929			29673000	0	29673000	637	68	619	1219	1182	1182				16			1	
TPAQYDASELK	Unmodified	1221.5877	0.58773217	66	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		33.771	33.771	2	0.019182	6999	GX_QE_U300_20240930_Hela_A1	64.82	43.96			10905000	10905000	0	638	66	620	1220	1183	1183							1	
TPEVTCVVVDVSHEDPEVK	Unmodified	2138.0201	0.02014968	39	P01857	IGHG1	Ig gamma-1 chain C region	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	49.691	49.595	3	9.5523E-91	12379	GX_QE_U300_20240930_Hela_B1	156.15	142.24			98398000	13397000	85001000	639	39	621	1221;1222	1184;1185;1186	1185							3	
TPEVTCVVVDVSHEDPEVQFNWYVDGVEVHNAK	Unmodified	3796.7679	0.76790474	40	P01859	IGHG2	Ig gamma-2 chain C region	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	12	75.402	75.298	4	3.4222E-38	18513	GX_QE_U300_20240930_Hela_B1	110.16	96.428			256040000	4984100	251050000	640	40	622	1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235	1187;1188;1189;1190;1191;1192;1193;1194;1195;1196;1197;1198;1199;1200;1201;1202;1203;1204;1205	1194							16	
TSFFQALGITTK	Unmodified	1312.7027	0.70270235	56	Q8NHW5;P05388	RPLP0P6;RPLP0	60S acidic ribosomal protein P0-like;60S acidic ribosomal protein P0	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	67.454	67.394	2	0.0014498	18577	GX_QE_U300_20240930_Hela_B1	84.479	63.959			14026000	4017200	10009000	641	56	623	1236;1237	1206;1207	1207							2	
TSIAIDTIINQK	Unmodified	1315.7347	0.73473076	127	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		52.081	52.081	2	0.0072292	13304	GX_QE_U300_20240930_Hela_A1	71.349	45.775			3655200	3655200	0	642	127	624	1238	1208	1208							1	
TSIRDPCAGPVCDCKR	Unmodified	1890.8499	0.84987042	174	P54289	CACNA2D1	Voltage-dependent calcium channel subunit alpha-2/delta-1;Voltage-dependent calcium channel subunit alpha-2-1;Voltage-dependent calcium channel subunit delta-1	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	26.908	26.748	4	0.001164	4492	GX_QE_U300_20240930_Hela_B1	51.147	31.385			2786500	0	2786500	643	174	625	1239	1209	1209							1	
TSNISKPGTLER	oFuc(1)HexNAc(1)	1677.8421	0.84210896	269	Q9UBG0	MRC2	C-type mannose receptor 2	yes	yes	0	0	0	0	1	0	0	1	By MS/MS		1		31.66	31.66	3	0.005547	6233	GX_QE_U300_20240930_Hela_A1	58.814	46.238			14515000	14515000	0	644	269	626	1240	1210	1210				102			1	
TSRPENAIIYNNNEDFQVGQAK	Unmodified	2507.2041	0.20407913	137	P29401	TKT	Transketolase	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	42.702	42.702	3	3.3233E-59	10081	GX_QE_U300_20240930_Hela_B1	138.35	111.91			18137000	18137000	0	645	137	627	1241;1242	1211;1212	1212							2	
TTGFGMIYDSLDYAK	Oxidation (M)	1696.7654	0.76543854	188	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	0	0	0	1	0		By MS/MS		1	59.396	59.229	2	0.00034804	15674	GX_QE_U300_20240930_Hela_B1	51.875	30.317			0	0	0	646	188	628	1243	1213	1213						100	1	
TTHFVEGGDAGNREDQINR	Unmodified	2114.973	0.97295699	112	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		28.229	28.229	4	1.5218E-76	5035	GX_QE_U300_20240930_Hela_A1	148.44	120.11			6330300	6330300	0	647	112	629	1244	1214	1214							1	
TTPSYVAFTDTER	Unmodified	1486.694	0.69398816	88;83;110	P0DMV8;P0DMV9;P34931;P11142;P54652;P48741;P17066	HSPA1A;HSPA1B;HSPA1L;HSPA8;HSPA2;HSPA7;HSPA6	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 6	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	45.521	45.427	2	1.7663E-05	11063	GX_QE_U300_20240930_Hela_A1	107.85	87.148			30526000	11636000	18890000	648	83;88;110	630	1245;1246	1215;1216	1215							2	
TVAQNYSSVTHLHSIGK	oFuc(1)HexNAc(1)	2217.0913	0.091340788	99	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	2	1	38.472	38.411	3;4	1.9892E-05	8642	GX_QE_U300_20240930_Hela_A1	84.425	74.503			93113000	72951000	20162000	649	99	631	1247;1248;1249	1217;1218;1219	1217				45			3	
TVDGPSGKLWR	Unmodified	1214.6408	0.6407708	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	36.149	35.964	3	0.0076842	7750	GX_QE_U300_20240930_Hela_B1	38.021	19.276			0	0	0	650	51	632	1250	1220	1220							1	
TVDNFVALATGEK	Unmodified	1363.6983	0.69834526	122	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		56.326	56.326	2	0.0078075	14739	GX_QE_U300_20240930_Hela_A1	64.918	31.403			8533100	8533100	0	651	122	633	1251	1221	1221							1	
TVDNFVALATGEKGFGYK	Unmodified	1915.968	0.96797818	122	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	58.479	58.305	3	0.00073051	15329	GX_QE_U300_20240930_Hela_B1	76.768	59.69			21948000	0	21948000	652	122	634	1252	1222	1222							1	
TVIIEQSWGSPK	Unmodified	1343.7085	0.70851601	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	46.194	46.098	2	1.1717E-24	11218	GX_QE_U300_20240930_Hela_B1	125.75	88.555			18231000	4847300	13383000	653	86	635	1253;1254	1223;1224	1224							2	
TVMENFVAFVDK	Unmodified	1398.6853	0.68533773	5	CON__P02769			yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		67.417	67.417	2	0.0024863	18544	GX_QE_U300_20240930_Hela_A1	80.763	57.934		+	4470600	4470600	0	654	5	636	1255	1225	1225							1	
TVMPYISTTPAK	Oxidation (M)	1323.6744	0.67443869	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	1	0	By MS/MS		1		35.73	35.73	2	0.002235	7640	GX_QE_U300_20240930_Hela_A1	78.655	39.633			7492800	7492800	0	655	57	637	1256	1226	1226						23	1	
TVMPYISTTPAKLR	Oxidation (M)	1592.8596	0.8596137	57	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	2	38.019	37.928	2;3	2.6735E-22	8396	GX_QE_U300_20240930_Hela_B1	119.87	93.335			54079000	21915000	32163000	656	57	638	1257;1258;1259	1227;1228;1229	1228						23	3	
TVSLGAGAKDELHIVEAEAMNYEGSPIK	Oxidation (M)	2944.4488	0.44880244	61	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	60.556	60.395	4	3.7609E-31	16061	GX_QE_U300_20240930_Hela_B1	112.39	80.206			10133000	0	10133000	657	61	639	1260	1230	1230						29	1	
TWNDPSVQQDIK	Unmodified	1429.6838	0.68375782	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	2	40.39	40.299	2	0.0033045	9323	GX_QE_U300_20240930_Hela_A1	78.342	64.763			27189000	10586000	16603000	658	87	640	1261;1262;1263	1231;1232;1233	1232							3	
TYETTLEK	Unmodified	983.48114	0.48114184	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	29.783	29.691	2	3.9761E-16	5533	GX_QE_U300_20240930_Hela_B1	122.18	57.373		+	137650000	90544000	47106000	659	4	641	1264;1265	1234	1234							1	
TYNGTNPDAASR	OFuc(1)HexNAc(1)(N)	1670.7384	0.73837217	24	O60637	TSPAN3	Tetraspanin-3	yes	yes	0	0	0	0	0	1	0	0	By MS/MS		1		34.448	34.448	2	0.018927	7251	GX_QE_U300_20240930_Hela_A1	40.066	26.16			4923900	4923900	0	660	24	642	1266	1235	1235					0;1		1	
TYNGTNPDAASR	oFuc(1)HexNAc(1)	1641.7118	0.71182307	24	O60637	TSPAN3	Tetraspanin-3	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	2	1	30.309	30.217	2	0.00064646	5812	GX_QE_U300_20240930_Hela_B1	79.089	62.125			24449000	4071300	20378000	661	24	642	1267;1268;1269	1236;1237	1237				5;6			2	
TYSLGSALRPSTSR	Unmodified	1494.7791	0.77905519	77	P08670	VIM	Vimentin	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	2	2	38.593	38.502	2;3	0.00081634	8624	GX_QE_U300_20240930_Hela_B1	70.438	57.877			100780000	37613000	63165000	662	77	643	1270;1271;1272;1273	1238;1239	1238							2	
TYSYLTPDLWK	Unmodified	1385.6867	0.68671794	108	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	61.174	61.096	2	1.5699E-06	16318	GX_QE_U300_20240930_Hela_B1	113.22	86.355			18192000	4144100	14048000	663	108	644	1274;1275	1240;1241	1241							2	
VAEDEAEAAAAAKFTGLSKEELLK	Unmodified	2490.2853	0.28534915	74	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	54.871	54.68	4	0.0015913	14127	GX_QE_U300_20240930_Hela_B1	42.806	35.694			10185000	0	10185000	664	74	645	1276	1242	1242							1	
VAEVLNDPENMEKR	Oxidation (M);2 O(2)Fuc(1)HexNAc(1)(N)	2409.1217	0.12171422	209	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	2	0	0	1	1		By MS/MS		1	74.074	73.963	3	0.01135	20777	GX_QE_U300_20240930_Hela_B1	48.659	24.372			16311000	0	16311000	665	209	646	1277	1243	1243			0;1			116	1	
VAPEEHPVLLTEAPLNPK	Unmodified	1953.0571	0.057127534	181	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	46.556	46.461	3	1.6423E-18	11316	GX_QE_U300_20240930_Hela_B1	107.03	10.252			92687000	40886000	51801000	666	181	647	1278;1279	1244;1245;1246;1247	1245							4	
VAPEEHPVLLTEAPLNPKANR	Unmodified	2294.2383	0.2382798	181	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	42.422	42.33	4	4.7421E-08	9990	GX_QE_U300_20240930_Hela_B1	87.49	77.735			45563000	7711100	37852000	667	181	648	1280;1281	1248;1249	1249							2	
VASVININPNTTHSTGSCR	oFuc(1)HexNAc(1)	2403.1336	0.13361631	94	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	5	3	41.044	40.975	3	5.2717E-181	9527	GX_QE_U300_20240930_Hela_A1	198.24	178.85			298900000	190710000	108190000	668	94	649	1282;1283;1284;1285;1286;1287;1288;1289	1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261	1252				40;41;42			12	
VCEIHEDNSTR	oFuc(1)HexNAc(1)	1734.7367	0.73665761	227	Q29983	MICA	MHC class I polypeptide-related sequence A	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	28.398	28.313	3	0.0046439	5058	GX_QE_U300_20240930_Hela_A1	65.472	45.768			32663000	18264000	14399000	669	227	650	1290;1291	1262	1262				80			1	
VDNALQSGNSQESVTEQDSK	Unmodified	2134.9614	0.96144883	38	P01834	IGKC	Ig kappa chain C region	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	1	31.19	31.19	2;3	5.6698E-29	6076	GX_QE_U300_20240930_Hela_A1	95.206	88.36			17243000	17243000	0	670	38	651	1292;1293;1294	1263;1264;1265	1263							3	
VEILANDQGNR	Unmodified	1227.6208	0.62076364	110	P48741;P17066	HSPA7;HSPA6	Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 6	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	32.31	32.121	2	5.7033E-15	6407	GX_QE_U300_20240930_Hela_B1	115.71	0			0	0	0	671	110	652	1295	1266	1266							1	
VETGVLKPGMVVTFAPVNVTTEVK	Oxidation (M)	2530.3717	0.37166174	196	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	2	2	55.458	55.364	3	9.6873E-82	14372	GX_QE_U300_20240930_Hela_B1	150.06	136.83			106030000	27022000	79006000	672	196	653	1296;1297;1298;1299	1267;1268;1269;1270	1270						108	4	
VFDEFKPLVEEPQNLIK	Unmodified	2044.0881	0.088093311	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	3	62.45	62.352	2;3	2.3297E-168	16795	GX_QE_U300_20240930_Hela_B1	195.27	185.36		+	392780000	58272000	334510000	673	4	654	1300;1301;1302;1303	1271;1272;1273;1274	1272							4	
VFIGNLNTLVVK	Unmodified	1315.7864	0.7863724	71	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	58.935	58.852	2	0.0015875	15545	GX_QE_U300_20240930_Hela_B1	83.862	65.998			11532000	3469000	8062600	674	71	655	1304;1305	1275	1275							1	
VFKQPSKPEIVSK	Unmodified	1485.8555	0.8555146	215	Q13740	ALCAM	CD166 antigen	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	2	2	28.013	27.928	3;4	1.1122E-19	4923	GX_QE_U300_20240930_Hela_B1	119.25	98.52			20149000	7207900	12942000	675	215	656	1306;1307;1308;1309	1276;1277;1278;1279	1279							4	
VFLENVIR	Unmodified	988.57057	0.57056597	186	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	52.893	52.797	2	1.1225E-44	13496	GX_QE_U300_20240930_Hela_B1	148.21	100.29			43241000	8873200	34368000	676	186	657	1310;1311	1280	1280							1	
VFNDSGNLSNHKR	OFuc(1)HexNAc(1)(N);oFuc(1)HexNAc(1);Fuc(O)	2660.1937	0.19369319	238	Q6ZNA1	ZNF836	Zinc finger protein 836	yes	yes	0	1	0	0	1	1	0	1		By MS/MS		1	49.447	49.254	3	0.0029324	12356	GX_QE_U300_20240930_Hela_B1	53.252	35.114			110780000	0	110780000	677	238	658	1312	1281;1282	1281	3;4			85;86	12		2	
VFSLAVNLIAIDSQVLCGAVK	Unmodified	2216.2239	0.22387529	37	P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		2	85.175	84.938	2;3	3.5313E-10	24642	GX_QE_U300_20240930_Hela_B1	95.651	81.988			16334000	0	16334000	678	37	659	1313;1314	1283;1284	1284							2	
VGEVIVTK	Unmodified	843.50657	0.50656873	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	30.732	30.548	2	7.647E-06	5839	GX_QE_U300_20240930_Hela_B1	77.318	39.157			4246700	0	4246700	679	86	660	1315	1285	1285							0	
VGEVIVTKDDAMLLK	Oxidation (M)	1645.8961	0.89605879	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	44.126	43.939	3	0.0042031	10509	GX_QE_U300_20240930_Hela_B1	45.434	25.776			8913500	0	8913500	680	86	661	1316	1286	1286						43	1	
VGINYQPPTVVPGGDLAK	Unmodified	1823.9781	0.97814893	197;258	P68363;P68366;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	0	0	0	0	0	By MS/MS		1		51.704	51.704	2	0.010478	13137	GX_QE_U300_20240930_Hela_A1	42.209	33.021			12743000	12743000	0	681	197;258	662	1317	1287	1287							1	
VGLDATNCLR	oFuc(1)HexNAc(1)	1493.7032	0.70317264	264	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	0	0	0	1	0	0	0		By MS/MS		1	48.642	48.45	2	0.011174	12036	GX_QE_U300_20240930_Hela_B1	54.549	20.297			16982000	0	16982000	682	264	663	1318	1288	1288				99			1	
VGLQVVAVK	Unmodified	911.5804	0.58040237	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	41.043	40.86	2	0.00091976	9440	GX_QE_U300_20240930_Hela_B1	83.753	68.12			0	0	0	683	86	664	1319	1289	1289							1	
VHGPGIQSGTTNKPNKFTVETR	Unmodified	2367.2295	0.22950602	117	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By matching	1	1	28.784	28.695	5	1.0087E-32	5146	GX_QE_U300_20240930_Hela_A1	115.42	101.16			8994000	3444000	5550000	684	117	665	1320;1321	1290	1290							1	
VHLVGIDIFTGK	Unmodified	1297.7394	0.73942221	193	Q9GZV4;Q6IS14;P63241	EIF5A2;EIF5AL1;EIF5A	Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-1	yes	no	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	58.533	58.446	2	0.0040003	15440	GX_QE_U300_20240930_Hela_B1	76.282	66.866			13591000	1864100	11727000	685	193	666	1322;1323	1291	1291							1	
VHTECCHGDLLECADDR	Unmodified	2085.8303	0.83025719	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	2	2	32.774	32.679	3;4	1.0343000000000001E-215	6614	GX_QE_U300_20240930_Hela_B1	211.12	196.03		+	207840000	56772000	151070000	686	4	667	1324;1325;1326;1327	1292;1293;1294;1295;1296	1296							4	
VIGSLSNSKEFSEHFR	Unmodified	1835.9166	0.91661131	155	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	40.594	40.412	3	7.0674E-37	9283	GX_QE_U300_20240930_Hela_B1	105.46	76.696			0	0	0	687	155	668	1328	1297	1297							1	
VIISAPSADAPMFVMGVNHEK	2 Oxidation (M)	2244.0919	0.091874835	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	2	0		By MS/MS		1	46.93	46.739	3	9.106E-05	11458	GX_QE_U300_20240930_Hela_B1	46.353	30.462			0	0	0	688	51	669	1329	1298	1298						19;20	1	
VIISAPSADAPMFVMGVNHEKYDNSLK	2 Oxidation (M)	2964.4361	0.43612926	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	2	1		By MS/MS		1	47.55	47.359	4	1.4716E-11	11649	GX_QE_U300_20240930_Hela_B1	70.465	53.935			65130000	0	65130000	689	51	670	1330	1299;1300	1300						19;20	2	
VIKDFMIQGGDFTR	Oxidation (M)	1641.8185	0.81847717	122	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	45.99	45.895	3	0.0049855	11168	GX_QE_U300_20240930_Hela_B1	48.67	22.553			21334000	4121900	17212000	690	122	671	1331;1332	1301	1301						72	1	
VIPELNGK	Unmodified	868.50182	0.5018177	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	35.923	35.831	2	0.010943	7655	GX_QE_U300_20240930_Hela_B1	94.777	44.47			20647000	6689300	13958000	691	51	672	1333;1334	1302	1302							1	
VKAVKSSEHINEGETAMLVCK	Oxidation (M)	2345.1719	0.17191607	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	0	1	2	By MS/MS		1		28.76	28.76	4	1.613E-10	5177	GX_QE_U300_20240930_Hela_A1	91.637	69.162			4782400	4782400	0	692	147	673	1335	1303	1303						77	1	
VKEGMNIVEAMER	2 Oxidation (M)	1536.7276	0.72761325	191	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	0	0	2	1	By MS/MS		1		27.419	27.419	3	0.0039739	4763	GX_QE_U300_20240930_Hela_A1	55.724	36.944			2912600	2912600	0	693	191	674	1336	1304	1304						101;102	1	
VKYETELAMR	Oxidation (M)	1254.6278	0.62782285	58	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	30.19	30.098	2	0.001132	5682	GX_QE_U300_20240930_Hela_A1	80.231	38.729			0	0	0	694	58	675	1337;1338	1305;1306	1305						26	2	
VLDLHKK	Unmodified	851.52289	0.52288749	250	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		97.559	97.559	1	0.022688	28460	GX_QE_U300_20240930_Hela_A1	0	0			1283200	1283200	0	695	250	676	1339	1307	1307							1	
VLIAAHGNSLR	Unmodified	1149.6618	0.66184059	113	P18669;P15259	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	30.622	30.438	3	0.022341	5841	GX_QE_U300_20240930_Hela_B1	25.342	15.454			3759000	0	3759000	696	113	677	1340	1308	1308							0	
VLNVPLCKEDCEQWWEDCR	Unmodified	2535.0981	0.0980992	105	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0	0	0	0	1	By MS/MS		1		55.468	55.468	3	6.4939E-08	14458	GX_QE_U300_20240930_Hela_A1	59.372	49.45			0	0	0	697	105	678	1341	1309	1309							1	
VMLGETNPADSKPGTIR	Oxidation (M)	1800.904	0.90399771	107	P15531;P22392;O60361	NME1;NME2;NME2P1	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	0	0	0	1	1	By MS/MS	By MS/MS	1	1	33.678	33.583	3	0.00016273	6931	GX_QE_U300_20240930_Hela_A1	58.671	47.816			12254000	4942500	7311300	698	107	679	1342;1343	1310;1311	1310						65	2	
VMLGETNPADSKPGTIR	Unmodified	1784.9091	0.90908309	107	P15531;P22392;O60361	NME1;NME2;NME2P1	Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	0	0	0	0	1	By MS/MS		1		36.124	36.124	3	0.015627	7847	GX_QE_U300_20240930_Hela_A1	27.85	17.216			0	0	0	699	107	679	1344	1312	1312							1	
VNEDANLK	O(2)Fuc(1)HexNAc(1)(N);oFuc(1)HexNAc(1)	1652.7629	0.76285559	268	Q9P2P6	STARD9	StAR-related lipid transfer protein 9	yes	yes	0	0	0	1	1	0	0	0		By MS/MS		1	35.267	35.08	3	0.020494	7432	GX_QE_U300_20240930_Hela_B1	40.045	10.235			42820000	0	42820000	700	268	680	1345	1313	1313			11	101			1	
VNFAMNVGK	Oxidation (M)	994.4906	0.49060109	100	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	0	0	1	0	By MS/MS	By MS/MS	1	1	33.386	33.291	2	0.004133	6824	GX_QE_U300_20240930_Hela_A1	74.127	46.603			53244000	19022000	34222000	701	100	681	1346;1347	1314;1315	1314						60	2	
VNNSSLIGLGYTQTLKPGIK	Unmodified	2102.1736	0.17355427	118	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	50.798	50.605	3	0.00010814	12795	GX_QE_U300_20240930_Hela_B1	62.663	49.895			10724000	0	10724000	702	118	682	1348	1316	1316							1	
VNQIGSVTESLQACK	Unmodified	1632.8141	0.81412007	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By matching	1	1	43.901	43.808	2	1.1687999999999999E-21	10510	GX_QE_U300_20240930_Hela_A1	116.01	0			25931000	11758000	14173000	703	59	683	1349;1350	1317	1317							1	
VPESENNK	2 O(2)Fuc(1)HexNAc(1)(N)	1665.7581	0.75810456	232	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	2	0	0	0	0		By MS/MS		1	78.289	78.146	2	0.016784	22250	GX_QE_U300_20240930_Hela_B1	44.135	8.778			9959900	0	9959900	704	232	684	1351	1318	1318			3;4				1	
VPESENNK	O(2)Fuc(1)HexNAc(1)(N);O(1)Fuc(1)HexNAc(1)(N)	1636.7316	0.73155546	232	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	1	1	0	0	0	0		By MS/MS		1	81.73	81.542	2	0.012789	23426	GX_QE_U300_20240930_Hela_B1	49.358	19.549			7948500	0	7948500	705	232	684	1352	1319	1319		4;5	3;4				1	
VPGNQTSTTLK	oFuc(1)HexNAc(1)	1520.757	0.75698235	144	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		32.155	32.155	2	0.0073	6433	GX_QE_U300_20240930_Hela_A1	58.674	44.467			13676000	13676000	0	706	144	685	1353	1320	1320				58			1	
VQNMALYADVGGKQFPVTR	Oxidation (M)	2109.0677	0.067708995	171	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	0	0	0	1	1		By MS/MS		1	44.909	44.72	3	5.2161E-06	10719	GX_QE_U300_20240930_Hela_B1	75.589	57.672			10948000	0	10948000	707	171	686	1354	1321;1322	1321						85	2	
VSFELFADKVPK	Unmodified	1378.7497	0.74965254	191	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	2	54.9	54.805	2;3	0.0024535	14172	GX_QE_U300_20240930_Hela_B1	52.555	38.123			54307000	11307000	42999000	708	191	687	1355;1356;1357	1323;1324	1324							2	
VSFLSALEEYTK	Unmodified	1385.7078	0.70784731	43	P02647	APOA1	Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	72.05	71.996	2	0.00011683	20172	GX_QE_U300_20240930_Hela_B1	90.653	78.057			25347000	3396800	21950000	709	43	688	1358;1359	1325;1326	1326							2	
VTGLNCTTNHPINPK	oFuc(1)HexNAc(1)	2040.9786	0.97861922	76	P08648	ITGA5	Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	6	4	33.802	33.727	3	2.4418E-22	7210	GX_QE_U300_20240930_Hela_B1	117.26	102.84			236540000	118870000	117680000	710	76	689	1360;1361;1362;1363;1364;1365;1366;1367;1368;1369	1327;1328;1329;1330;1331;1332;1333;1334;1335;1336	1334				22;23;24			10	
VTIAQGGVLPNIQAVLLPK	Unmodified	1930.1615	0.16153303	81	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;Q93077;Q7L7L0;P04908	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	yes	no	0	0	0	0	0	0	0	0	By MS/MS		1		71.355	71.355	3	0.0045621	19921	GX_QE_U300_20240930_Hela_A1	28.083	27.996			5172100	5172100	0	711	81	690	1370	1337	1337							1	
VTLTSEEEAR	Unmodified	1133.5564	0.55643205	31	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		30.136	30.136	2	8.2545E-07	5710	GX_QE_U300_20240930_Hela_A1	103.55	58.936			0	0	0	712	31	691	1371	1338	1338							1	
VTPACNTSLPAQR	oFuc(1)HexNAc(1)	1789.8516	0.85162779	269	Q9UBG0	MRC2	C-type mannose receptor 2	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		3		37.346	37.346	2	2.0503E-06	8572	GX_QE_U300_20240930_Hela_A1	94.551	76.284			28372000	28372000	0	713	269	692	1372;1373;1374	1339;1340;1341	1340				103			3	
VTQSNFAVGYK	Unmodified	1212.6139	0.61388734	118	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	37.255	37.071	2	0.013009	8140	GX_QE_U300_20240930_Hela_B1	70.028	47.791			0	0	0	714	118	693	1375	1342	1342							1	
VVIGMDVAASEFFR	Unmodified	1539.7755	0.77554972	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS		1		69.061	69.061	2	0.0098837	19085	GX_QE_U300_20240930_Hela_A1	56.094	30.358			1829400	1829400	0	715	59	694	1376	1343	1343							1	
VVLAYEPVWAIGTGK	Unmodified	1601.8817	0.88172935	179	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	64.969	64.837	2	0.0021652	17596	GX_QE_U300_20240930_Hela_B1	76.522	60.32			4210300	0	4210300	716	179	695	1377	1344	1344							1	
VVLGANGTYSCLVR	oFuc(1)HexNAc(1)	1883.9299	0.92987811	235	Q5ZPR3	CD276	CD276 antigen	yes	no	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	4	1	51.887	51.838	2	2.2079E-07	13135	GX_QE_U300_20240930_Hela_B1	95.631	74.168			99732000	53024000	46708000	717	235	696	1378;1379;1380;1381;1382	1345;1346;1347;1348;1349	1349				82			5	
VVLGANGTYSCLVR	OFuc(1)HexNAc(1)(N)	1912.9564	0.95642721	235	Q5ZPR3	CD276	CD276 antigen	yes	no	0	0	0	0	0	1	0	0	By MS/MS		1		54.931	54.931	2	0.0097607	14266	GX_QE_U300_20240930_Hela_A1	40.552	27.499			3914300	3914300	0	718	235	696	1383	1350	1350					11		1	
VVNPTQK	Unmodified	784.4443	0.44430282	35	P01009;P20848	SERPINA1;SERPINA2	Alpha-1-antitrypsin;Short peptide from AAT;Putative alpha-1-antitrypsin-related protein	yes	no	0	0	0	0	0	0	0	0	By matching	By MS/MS	1	1	23.211	23.163	2	0.014715	3366	GX_QE_U300_20240930_Hela_B1	97.473	52.862			13336000	9672400	3663800	719	35	697	1384;1385	1351	1351							1	
VVPDSCCKTVVALCGQR	Unmodified	1947.9329	0.93287177	162	P48509	CD151	CD151 antigen	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	37.288	37.196	3	3.1884E-11	8180	GX_QE_U300_20240930_Hela_B1	102.38	81.951			12701000	6969700	5731500	720	162	698	1386;1387	1352;1353;1354	1354							3	
VVSVLTVVHQDWLNGK	Unmodified	1792.9836	0.98356866	40	P01859	IGHG2	Ig gamma-2 chain C region	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	62.442	62.294	3	0.015699	16755	GX_QE_U300_20240930_Hela_B1	24.538	18.932			5781900	0	5781900	721	40	699	1388	1355	1355							0	
VYACEVTHQGLSSPVTK	Unmodified	1874.9196	0.91964777	38	P01834	IGKC	Ig kappa chain C region	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	35.912	35.819	3	1.5776E-08	7674	GX_QE_U300_20240930_Hela_B1	97.579	83.862			37036000	13883000	23153000	722	38	700	1389;1390	1356;1357	1357							2	
VYVGNLGNNGNKTELER	Unmodified	1875.9439	0.94388869	201	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	35.543	35.356	3	1.7455E-05	7537	GX_QE_U300_20240930_Hela_B1	77.468	67.115			0	0	0	723	201	701	1391	1358	1358							1	
WGDAGAEYVVESTGVFTTMEK	Unmodified	2276.0307	0.030714366	51	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	69.428	69.315	3	2.1598E-06	19173	GX_QE_U300_20240930_Hela_B1	73.405	52.672			10134000	0	10134000	724	51	702	1392	1359	1359							1	
WLKGGVVLKEDALPGQK	Unmodified	1837.0462	0.046168917	147	P35613	BSG	Basigin	yes	yes	0	0	0	0	0	0	0	2	By MS/MS	By MS/MS	1	1	43.181	43.088	3	0.00021972	10232	GX_QE_U300_20240930_Hela_B1	73.464	65.953			26346000	4473900	21872000	725	147	703	1393;1394	1360	1360							1	
YALYDATYETK	Unmodified	1336.6187	0.61869795	125	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	44.147	44.053	2	2.4783E-20	10524	GX_QE_U300_20240930_Hela_B1	122.26	77.948			35265000	16548000	18717000	726	125	704	1395;1396	1361;1362	1362							2	
YESLTDPSKLDSGK	Unmodified	1538.7464	0.74641766	75;70	P07900;P08238;Q58FF8;Q58FF7	HSP90AA1;HSP90AB1;HSP90AB2P;HSP90AB3P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2;Putative heat shock protein HSP 90-beta-3	no	no	0	0	0	0	0	0	0	1	By MS/MS		1		36.739	36.739	3	0.023266	8064	GX_QE_U300_20240930_Hela_A1	26.969	7.1827			0	0	0	727	70;75	705	1397	1363	1363							1	
YFDKASYR	Unmodified	1048.4978	0.49779495	137	P29401	TKT	Transketolase	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	28.865	28.686	3	1.6937999999999999E-46	5187	GX_QE_U300_20240930_Hela_B1	129.47	104.65			0	0	0	728	137	706	1398	1364	1364							1	
YGKDATNVGDEGGFAPNILENK	Unmodified	2308.0972	0.097154447	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	48.805	48.708	3	7.0137E-42	12144	GX_QE_U300_20240930_Hela_B1	127.35	111.59			34322000	13526000	20796000	729	59	707	1399;1400	1365	1365							1	
YHTSQSGDEMTSLSEYVSR	Oxidation (M)	2191.9328	0.93279124	75	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	0	0	1	0		By MS/MS		1	39.442	39.26	3	8.1959E-10	8902	GX_QE_U300_20240930_Hela_B1	90.718	78.45			12199000	0	12199000	730	75	708	1401	1366	1366						37	1	
YICENQDSISSK	Unmodified	1442.6348	0.63475872	4	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	3	1	32.386	32.325	2	4.3632E-67	5695	GX_QE_U300_20240930_Hela_A1	156.48	66.33		+	188960000	115740000	73214000	731	4	709	1402;1403;1404;1405	1367;1368;1369;1370;1371	1367							5	
YIDQEELNK	Unmodified	1150.5506	0.55061839	75;70	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	32.506	32.412	2	6.0956E-11	6516	GX_QE_U300_20240930_Hela_B1	118.33	59.783			28696000	9753900	18942000	732	70;75	710	1406;1407	1372;1373	1373							2	
YISPDQLADLYK	Unmodified	1424.7187	0.71874635	59	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	58.74	58.654	2	0.0099225	15464	GX_QE_U300_20240930_Hela_B1	83.869	70.093			35127000	15486000	19641000	733	59	711	1408;1409	1374;1375;1376	1375							3	
YLAEKYEWDVAEAR	Unmodified	1741.8312	0.83115034	95	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	0	0	0	1		By MS/MS		1	47.545	47.353	3	0.0011757	11667	GX_QE_U300_20240930_Hela_B1	65.704	36.366			0	0	0	734	95	712	1410	1377	1377							1	
YLAEVAAGDDKK	Unmodified	1278.6456	0.6455814	192	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	2	29.196	29.107	2;3	5.8131E-16	5334	GX_QE_U300_20240930_Hela_B1	103.4	79.108			7799000	2763100	5036000	735	192	713	1411;1412;1413	1378;1379	1379							2	
YLENGKETLQR	Unmodified	1349.6939	0.69392858	41	P30511;P01893;P04439;P10321	HLA-F;HLA-H;HLA-A;HLA-C	HLA class I histocompatibility antigen, alpha chain F;Putative HLA class I histocompatibility antigen, alpha chain H;HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain	yes	no	0	0	0	0	0	0	0	1	By MS/MS	By MS/MS	1	1	27.844	27.759	3	1.4570999999999998E-38	4871	GX_QE_U300_20240930_Hela_A1	125.74	87.338			5446000	2132500	3313600	736	41	714	1414;1415	1380;1381	1380							2	
YLTVAAVFR	Unmodified	1038.5862	0.58621603	198;67	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	57.243	57.153	2	0.01024	14967	GX_QE_U300_20240930_Hela_B1	70.525	51.794			10252000	2718400	7533200	737	67;198	715	1416;1417	1382	1382							1	
YLYEIAR	Unmodified	926.48617	0.48616764	4;5	CON__P02768-1;P02768;CON__P02769	ALB	Serum albumin	no	no	0	0	0	0	0	0	0	0	By MS/MS	By MS/MS	1	1	42.902	42.809	2	0.00091831	10098	GX_QE_U300_20240930_Hela_B1	105.27	0		+	64610000	34232000	30378000	738	4;5	716	1418;1419	1383	1383							1	
YPIEHGIITNWDDMEK	Oxidation (M)	1975.8986	0.89857798	195	P68133;P68032;P63267;P62736	ACTA1;ACTC1;ACTG2;ACTA2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	0	0	0	0	0	1	0		By MS/MS		1	47.112	46.921	3	1.0648E-34	11510	GX_QE_U300_20240930_Hela_B1	123.63	113.7			67721000	0	67721000	739	195	717	1420	1384;1385	1385						106	2	
YQEDTCYGDAGSAFAVHDLEEDTWYATGILSFDK	Unmodified	3873.6628	0.66283055	34	P00738	HP	Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain	yes	yes	0	0	0	0	0	0	0	0		By MS/MS		1	80.032	79.87	3	0.001675	22830	GX_QE_U300_20240930_Hela_B1	32.553	27.02			13981000	0	13981000	740	34	718	1421	1386	1386							1	
YSQKEDKYEEEIK	Unmodified	1687.7941	0.79409613	62	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	0	0	0	0	2		By MS/MS		1	27.127	26.967	4	0.0066876	4578	GX_QE_U300_20240930_Hela_B1	49.627	34.751			2780000	0	2780000	741	62	719	1422	1387	1387							1	
YTSSLTNHK	oFuc(1)HexNAc(1)	1425.6624	0.66235368	221	Q14929	ZNF169	Zinc finger protein 169	yes	yes	0	0	0	0	1	0	0	0	By MS/MS		1		32.515	32.515	2	0.014895	6537	GX_QE_U300_20240930_Hela_A1	51.854	6.773			15933000	15933000	0	742	221	720	1423	1388	1388				77			1	
YVQNGTYTVK	oFuc(1)HexNAc(1)	1547.7355	0.73551862	218	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	1	0	0	0	By MS/MS	By MS/MS	1	1	35.955	35.862	2	0.0012472	7766	GX_QE_U300_20240930_Hela_A1	78.043	61.469			67446000	32965000	34482000	743	218	721	1424;1425	1389;1390	1389				76			2	
YYVTIIDAPGHR	Unmodified	1403.7197	0.7197494	196	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	0	0	0	0		By MS/MS		1	44.473	44.285	3	0.012607	10616	GX_QE_U300_20240930_Hela_B1	53.569	53.569			9684400	0	9684400	744	196	722	1426	1391	1391							1	
