MetaMorpheus: version 1.0.1
Time to run task: 00:00:35.6196976


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Target inter-crosslinks within 1% FDR: 1
Target intra-crosslinks within 1% FDR: 24
Target single peptides within 1% FDR: 2666
Target loop-linked peptides within 1% FDR: 523
Target deadend peptides within 1% FDR: 438



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Engine Results:

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:00.8057904

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:00.7123007

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:00.7315007

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:01.6262428
crosslinks within 1% FDR: 105
Delta Score Used for FDR Analysis: False

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*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.8962912087912088
*       Area Under Curve:  0.715
*       Area under Precision recall Curve:  0.9619944059280048
*       F1Score:  0.9432249431285963
*       LogLoss:  0.42735530969942714
*       LogLossReduction:  -0.09229991091787348
*       PositivePrecision:  0.9431139512661251
*       PositiveRecall:  0.9479166666666666
*       NegativePrecision:  0.18333333333333335
*       NegativeRecall:  0.375
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:04.4832363
PSMs within 1% FDR: 3564
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9959346839956997
*       Area Under Curve:  0.999864122004515
*       Area under Precision recall Curve:  0.9999055207142403
*       F1Score:  0.9965859683370449
*       LogLoss:  Infinity
*       LogLossReduction:  -Infinity
*       PositivePrecision:  0.9944272291332387
*       PositiveRecall:  0.9987558316759911
*       NegativePrecision:  0.9981709787677542
*       NegativeRecall:  0.9918057474348607
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0106673
skippeps within 1% FDR: 2666
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0005563
skippeps within 1% FDR: 523
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0004000
skippeps within 1% FDR: 438
Delta Score Used for FDR Analysis: False



