MetaMorpheus: version 1.0.1
Time to run task: 00:01:31.0517493


--------------------------------------------------



Target inter-crosslinks within 1% FDR: 2
Target intra-crosslinks within 1% FDR: 1050
Target single peptides within 1% FDR: 1271
Target loop-linked peptides within 1% FDR: 784
Target deadend peptides within 1% FDR: 1475



--------------------------------------------------


Engine Results:

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:04.1161962

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:04.0967138

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:04.2718155

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:03.6099747
crosslinks within 1% FDR: 2823
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9528815640937957
*       Area Under Curve:  0.9642708587091999
*       Area under Precision recall Curve:  0.9467152574012517
*       F1Score:  0.9580055771340689
*       LogLoss:  0.4455422425513921
*       LogLossReduction:  0.5510169596281906
*       PositivePrecision:  0.9423673686310498
*       PositiveRecall:  0.9742014742014742
*       NegativePrecision:  0.9669432252345292
*       NegativeRecall:  0.9266273001922549
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:04.6333005
PSMs within 1% FDR: 3538
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9902332307025553
*       Area Under Curve:  0.9994309552217322
*       Area under Precision recall Curve:  0.9996708977713152
*       F1Score:  0.9922869088629012
*       LogLoss:  0.1136529952029021
*       LogLossReduction:  0.8800341658030828
*       PositivePrecision:  0.99359233995276
*       PositiveRecall:  0.9909927612565163
*       NegativePrecision:  0.9844933535800512
*       NegativeRecall:  0.9889173752190562
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0009314
skippeps within 1% FDR: 1271
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0005662
skippeps within 1% FDR: 784
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0010054
skippeps within 1% FDR: 1475
Delta Score Used for FDR Analysis: False



