MetaMorpheus: version 1.0.1
Time to run task: 00:00:51.5311842


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Target inter-crosslinks within 1% FDR: 0
Target intra-crosslinks within 1% FDR: 24
Target single peptides within 1% FDR: 2667
Target loop-linked peptides within 1% FDR: 523
Target deadend peptides within 1% FDR: 436



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Engine Results:

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:00.7178589

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:00.6082498

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:00.6407087

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:01.5976351
crosslinks within 1% FDR: 104
Delta Score Used for FDR Analysis: False

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*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9145299145299145
*       Area Under Curve:  0.5642361111111112
*       Area under Precision recall Curve:  0.9250960799119935
*       F1Score:  0.954017521902378
*       LogLoss:  0.6101310787900041
*       LogLossReduction:  -0.5594661114174073
*       PositivePrecision:  0.9421218877740616
*       PositiveRecall:  0.96875
*       NegativePrecision:  0.25
*       NegativeRecall:  0.375
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:04.3511268
PSMs within 1% FDR: 3564
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9952818777373484
*       Area Under Curve:  0.9998625852838233
*       Area under Precision recall Curve:  0.9999103669506959
*       F1Score:  0.9961231148423928
*       LogLoss:  0.052515064114619286
*       LogLossReduction:  0.945640759029087
*       PositivePrecision:  0.9947358692305354
*       PositiveRecall:  0.9975155279503105
*       NegativePrecision:  0.9961389744710918
*       NegativeRecall:  0.9918222771647711
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0013578
skippeps within 1% FDR: 2667
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0005109
skippeps within 1% FDR: 523
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0003706
skippeps within 1% FDR: 436
Delta Score Used for FDR Analysis: False



