MetaMorpheus: version 1.0.1
Time to run task: 00:01:48.4866390


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Target inter-crosslinks within 1% FDR: 0
Target intra-crosslinks within 1% FDR: 1001
Target single peptides within 1% FDR: 1275
Target loop-linked peptides within 1% FDR: 789
Target deadend peptides within 1% FDR: 1541



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Engine Results:

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:02.8736054

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:02.7543490

Engine type: CrosslinkSearchEngine
Time to run engine: 00:00:04.7823351

Engine type: FdrAnalysisEngine
Time to run engine: 00:00:05.9471051
crosslinks within 1% FDR: 2834
Delta Score Used for FDR Analysis: False

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*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9479972078031595
*       Area Under Curve:  0.9690755973113175
*       Area under Precision recall Curve:  0.9622694349450007
*       F1Score:  0.9542571993434612
*       LogLoss:  0.49970907755530797
*       LogLossReduction:  0.49517483901743653
*       PositivePrecision:  0.9390239639789566
*       PositiveRecall:  0.9700264274413922
*       NegativePrecision:  0.9603936599226863
*       NegativeRecall:  0.9200310559006211
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:06.9560419
PSMs within 1% FDR: 3561
Delta Score Used for FDR Analysis: False

************************************************************
*       Metrics for Determination of PEP Using Binary Classification      
*-----------------------------------------------------------
*       Accuracy:  0.9899861388751525
*       Area Under Curve:  0.9993197676423756
*       Area under Precision recall Curve:  0.9997197501792199
*       F1Score:  0.9926833659514636
*       LogLoss:  0.11184392101690051
*       LogLossReduction:  0.8755721199595922
*       PositivePrecision:  0.9933990010356046
*       PositiveRecall:  0.9919724770642202
*       NegativePrecision:  0.9826297740311568
*       NegativeRecall:  0.9856701529757695
*       Count of Ambiguous Peptides Removed:  0
************************************************************



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0013255
skippeps within 1% FDR: 1275
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0007575
skippeps within 1% FDR: 789
Delta Score Used for FDR Analysis: False



Engine type: FdrAnalysisEngine
Time to run engine: 00:00:00.0014538
skippeps within 1% FDR: 1541
Delta Score Used for FDR Analysis: False



