Sequence	K Count	R Count	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Ratio H/L	Ratio H/L normalized	Ratio H/L variability [%]	Ratio H/L count	Ratio H/L iso-count	Ratio H/L type	Intensity	Intensity L	Intensity H	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAAAAVSR	0	1	Unmodified	999.54614	0.54614213	391	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	0	3	0			1			13.222	13.222	2	0.0011746	3357	DP1061-13	98.943	67.072			NaN	NaN	NaN	0	0	Median	7803100	0	7803100	0	391	0	0	0	0		1	9606
AAAAAAALQAK	1	0	Unmodified	955.54508	0.5450795	141	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			2			12.965	12.965	2	0.010833	3183	DP1061-13	105.57	43.103			NaN	NaN	NaN	0	0	Median	0	0	0	1	141	1	1;2	1;2	2		2	9606
AAAAAGTATSQR	0	1	Acetyl (Protein N-term)	1116.5523	0.55234972	446	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	1	0	0	4	0				2		14.256	14.256	2	0.0033219	4535	DP1061-14	94.309	28.844			NaN	NaN	NaN	0	0	Median	0	0	0	2	446	2	3;4	3;4	4		2	9606
AAAAGGGGPGTAVGATGSGIAAAAAGLAVYR	0	1	Acetyl (Protein N-term)	2555.3092	0.30921291	381	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	1	0	0	2	0		1				23.189	23.189	3	4.3353E-17	12639	DP1061-12	136.53	107.88			NaN	NaN	NaN	0	0	Median	5966000	0	5966000	3	381	3	5	5	5		1	9606
AAAAVVVPAEWIK	1	0	Acetyl (Protein N-term)	1365.7656	0.76563696	370	Q8NI27	THOC2	THO complex subunit 2	yes	yes	1	0	0	2	0		1				23.827	23.827	2	8.4189E-05	13450	DP1061-12	112.13	47.922			NaN	NaN	NaN	0	0	Median	2352900	0	2352900	4	370	4	6	6;7	6		2	9606
AAAEIYEEFLAAFEGSDGNK	1	0	Unmodified	2130.9746	0.9745797	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				25.149	25.149	2	5.7462E-08	14925	DP1061-12	127.3	97.935			NaN	NaN	NaN	0	0	Median	2137200	0	2137200	5	28	5	7	8;9;10;11	11		4	9606
AAAIGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2264.126	0.12595216	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			2			19.908	19.908	3	0.0020593	10903	DP1061-13	77.391	48.22			NaN	NaN	NaN	0	0	Median	0	0	0	6	85	6	8;9	12;13	12		2	9606
AAAVAAAGAGEPQSPDELLPK	1	0	Acetyl (Protein N-term)	2004.0164	0.016384931	424	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	1	0	0	5	0					1	21.405	21.405	2	3.1631E-05	11824	DP1061-15	111.39	80.16			NaN	NaN	NaN	0	0	Median	0	0	0	7	424	7	10	14	14		1	9606
AADPPAENSSAPEAEQGGAE	0	0	Unmodified	1896.7973	0.79734361	250	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	3	0			1			14.432	14.432	2	4.0248E-06	4743	DP1061-13	118.51	82.204			NaN	NaN	NaN	0	0	Median	0	0	0	8	250	8	11	15;16;17	16		3	9606
AAEAADLGLGAAVPVELR	0	1	Acetyl (Protein N-term)	1763.9418	0.94176342	460	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	1	0	0	3	0			1			23.922	23.922	2	5.2194E-15	15828	DP1061-13	145.71	106.53			NaN	NaN	NaN	0	0	Median	3637700	0	3637700	9	460	9	12	18;19	19		2	9606
AAECNIVVTQPR	0	1	Unmodified	1356.682	0.68198369	279	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				15.325	15.325	2	0.00023448	4447	DP1061-12	117.67	81.729			NaN	NaN	NaN	0	0	Median	7871900	0	7871900	10	279	10	13	20;21	21		2	9606
AAEDELQLPR	0	1	Acetyl (Protein N-term)	1182.5881	0.58806652	256	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	1	0	0	4	0				1		19.862	19.862	2	0.011977	9945	DP1061-14	83.647	11.417			NaN	NaN	NaN	0	0	Median	2884800	0	2884800	11	256	11	14	22	22		1	9606
AAFGGSGGRGSSSGGGYSSGSSSYGSGGR	0	2	Unmodified	2500.0599	0.059934093	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	0			1			13.735	13.735	3	1.9384E-07	4010	DP1061-13	94.767	84.084		+	NaN	NaN	NaN	0	0	Median	0	0	0	12	17	12	15	23	23		1	9606
AAGLATMISTMRPDIDNMDEYVR	0	2	3 Oxidation (M)	2617.1822	0.18222276	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	3	1	2	0		2				17.604	17.604	2;3	0.0056265	6346	DP1061-12	67.312	53.964			NaN	NaN	NaN	0	0	Median	30993000	0	30993000	13	46	13	16;17	24;25;26;27	25	42;43;44	4	9606
AAGLATMISTMRPDIDNMDEYVR	0	2	2 Oxidation (M)	2601.1873	0.18730814	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	2	1	2	0		1				19.044	19.044	3	0.045635	7717	DP1061-12	41.292	19.295			NaN	NaN	NaN	0	0	Median	13801000	0	13801000	14	46	13	18	28;29	29	42;43;44	2	9606
AAGSDLLDEVFFNSEVDEK	1	0	Acetyl (Protein N-term)	2125.9692	0.96915997	23	O00268	TAF4	Transcription initiation factor TFIID subunit 4	yes	yes	1	0	0	2	0		1				26.844	26.844	2	0.00070898	16212	DP1061-12	98.531	63.327			NaN	NaN	NaN	0	0	Median	0	0	0	15	23	14	19	30	30		1	9606
AAGTAAALAFLSQESR	0	1	Acetyl (Protein N-term)	1604.8158	0.81583463	47	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	5	0					3	24.559	24.559	2	3.9488E-13	14564	DP1061-15	158.01	118.75			NaN	NaN	NaN	0	0	Median	2771200	0	2771200	16	47	15	20;21;22	31;32;33;34	31		4	9606
AAGTLYTYPENWR	0	1	Acetyl (Protein N-term)	1582.7416	0.74160705	125	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	3	0			1			22.158	22.158	2	4.8617E-83	13767	DP1061-13	210.08	184.95			1.1027	1.1292	NaN	1	0	Median	21723000	10795000	10928000	17	125	16	23	35;36;37;38	38		4	9606
AAGVEAAAEVAATEIK	1	0	Acetyl (Protein N-term)	1541.7937	0.7937022	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	3.75	0.433			1	3		23.208	23.208	2	1.41E-49	14946	DP1061-13	177.81	139.82			1.2724	1.3103	NaN	1	0	Median	19707000	8854600	10852000	18	188	17	24;25;26;27	39;40;41;42;43;44;45	42		7	9606
AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPK	2	0	Acetyl (Protein N-term);Oxidation (M)	3406.6198	0.61984352	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	1	1	3	0			1			23.546	23.546	4	0.00025521	15300	DP1061-13	53.867	30.895			1.1228	1.1332	NaN	1	0	Median	7619800	3969700	3650100	19	188	18	28	46	46	201	0	9606
AAGVNVEPFWPGLFAK	1	0	Unmodified	1701.8879	0.88787736	69	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	23.047	23.047	2	5.492799999999999E-21	13254	DP1061-15	134.98	134.98			1.3574	1.2126	NaN	1	0	Median	5099200	2207000	2892100	20	69	19	29	47;48;49;50	48		4	9606
AALDEAQGVGLDSTGYYDQEIYGGSDSR	0	1	Unmodified	2936.2948	0.29480422	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				20.425	20.425	2;3	3.5822E-66	9416	DP1061-12	202.84	184.88			NaN	NaN	NaN	0	0	Median	21987000	0	21987000	21	46	20	30;31	51;52;53;54;55;56;57	54		7	9606
AALGPSSQNVTEYVVR	0	1	Acetyl (Protein N-term)	1731.8792	0.87916317	139	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	1	0	0	3.33	0.471			2	1		20.853	20.853	2	1.8385E-17	11071	DP1061-14	169.23	128.12			NaN	NaN	NaN	0	0	Median	8306100	0	8306100	22	139	21	32;33;34	58;59;60;61	60		4	9606
AALQELLSK	1	0	Unmodified	971.56515	0.56514624	235	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	17.878	17.878	2	6.3529E-05	8006	DP1061-15	114.5	58.376			1.5701	1.4026	NaN	1	0	Median	14673000	6136300	8536300	23	235	22	35	62;63;64;65	62		4	9606
AANATTNPSQLLPLELVDK	1	0	Acetyl (Protein N-term)	2036.079	0.078985188	456	Q9Y4Y9	LSM5	U6 snRNA-associated Sm-like protein LSm5	yes	yes	1	0	0	5	0					2	23.926	23.926	2	0.00018983	14038	DP1061-15	103.39	73.056			NaN	NaN	NaN	0	0	Median	0	0	0	24	456	23	36;37	66;67	67		2	9606
AAPEEPQQRPPEAVAAAPAGTTSSR	0	2	Unmodified	2488.2306	0.23062824	391	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3	0			1			14.467	14.467	3	0.0021148	4727	DP1061-13	88.976	59.529			NaN	NaN	NaN	0	0	Median	6606500	0	6606500	25	391	24	38	68;69;70	69		3	9606
AAQDRDQIYR	0	2	Unmodified	1234.6054	0.60544792	245	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	1	4	0				1		12.489	12.489	3	0.0032287	2654	DP1061-14	72.879	40.464			6.7739	6.4598	NaN	1	0	Median	10485000	1303200	9181600	26	245	25	39	71;72	72		2	9606
AAQQQEEQEEKEEEDDEQTLHR	1	1	Unmodified	2698.159	0.15903902	256	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	1	4	0				1		13.939	13.939	4	0.0021459	4158	DP1061-14	83.393	63.318			NaN	NaN	NaN	0	0	Median	4856900	0	4856900	27	256	26	40	73;74	74		2	9606
AASAAAASAAAASAASGSPGPGEGSAGGEKR	1	1	Acetyl (Protein N-term)	2584.2113	0.21134936	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	1	2	0		2				17.523	17.523	2	2.4217E-71	6430	DP1061-12	202.6	161.04			NaN	NaN	NaN	0	0	Median	0	0	0	28	292	27	41;42	75;76	76		2	9606
AASTASHRPIK	1	1	Acetyl (Protein N-term)	1179.636	0.63601977	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	1	0	1	4	0				1		12.395	12.395	2	0.0023132	2546	DP1061-14	119.68	66.964			NaN	NaN	NaN	0	0	Median	4226400	0	4226400	29	155	28	43	77;78	77		2	9606
AATASAGAGGIDGKPR	1	1	Acetyl (Protein N-term)	1440.7321	0.732105	273	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	4	0				2		14.255	14.255	2	9.678100000000001E-30	4355	DP1061-14	149.41	102.59			1.4757	1.4885	NaN	1	0	Median	11158000	4195900	6961700	30	273	29	44;45	79;80;81;82;83;84	80		6	9606
AATGEEVSAEDLGGADLHCR	0	1	Unmodified	2056.912	0.91199621	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.88	0.781	1		6	1		17.955	17.955	2;3	4.1822E-276	6444	DP1061-13	308.68	308.68			0.92331	0.93505	6.984	5	0	Median	757720000	389100000	368620000	31	417	30	46;47;48;49;50;51;52;53	85;86;87;88;89;90;91;92;93;94;95;96;97;98;99;100;101;102;103;104;105;106;107;108;109;110;111;112;113;114	99		30	9606
AAVELEEPEDAR	0	1	Unmodified	1327.6256	0.62557424	52	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		4				15.741	15.741	2	0.014931	4776	DP1061-12	82.261	24.671			NaN	NaN	NaN	0	0	Median	0	0	0	32	52	31	54;55;56;57	115;116;117;118	115		4	9606
AAVENLPTFLVELSR	0	1	Unmodified	1657.9039	0.90392136	312	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				23.492	23.492	2	0.0066498	13111	DP1061-12	69.846	69.846			1.8988	2.0583	NaN	1	0	Median	4757600	1863600	2894000	33	312	32	58	119	119		1	9606
AAYFGIYDTAK	1	0	Unmodified	1218.5921	0.59208927	66	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	4	0				1		18.478	18.478	2	0.0016946	8503	DP1061-14	87.806	73.688			1.3364	1.2764	NaN	1	0	Median	21795000	9972200	11823000	34	66	33	59	120;121;122	120		3	9606
AAYFGVYDTAK	1	0	Unmodified	1204.5764	0.57643921	94;93	P12235;P12236	SLC25A4;SLC25A6	ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		17.684	17.684	2	0.018196	7689	DP1061-14	63.426	41.576			1.0391	0.99249	NaN	1	0	Median	8566400	3931400	4635000	35	93;94	34	60	123;124	124		2	9606
ACQSIYPLHDVFVR	0	1	Unmodified	1703.8454	0.84536062	202	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.712	18.712	3	6.676E-06	8772	DP1061-14	89.46	67.547			1.4293	1.4604	NaN	1	0	Median	7197200	2960200	4236900	36	202	35	61	125;126	125		2	9606
ACTELGIR	0	1	Unmodified	918.4593	0.45930096	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				14.816	14.816	2	0.027415	4008	DP1061-12	79.116	35.308			0.87438	0.94781	NaN	1	0	Median	96679000	49229000	47450000	37	89	36	62	127;128	127		2	9606
ADAFGDELFSVFEGDSTTAAGTK	1	0	Acetyl (Protein N-term)	2377.0598	0.059765888	157	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	1	0	0	2	0		1				27.221	27.221	2	1.7399E-55	16587	DP1061-12	195.38	167.02			NaN	NaN	NaN	0	0	Median	2028300	0	2028300	38	157	37	63	129;130;131;132	132		4	9606
ADAFGDELFSVFEGDSTTAAGTKK	2	0	Acetyl (Protein N-term)	2505.1547	0.15472891	157	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	1	0	1	2	0		3				24.863	24.863	2	1.5715E-14	14604	DP1061-12	134.44	110.96			NaN	NaN	NaN	0	0	Median	1191700	0	1191700	39	157	38	64;65;66	133;134;135;136	135		4	9606
ADATNVNNWHWTER	0	1	Unmodified	1712.7655	0.76553039	56	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		17.166	17.166	3	8.0835E-05	7168	DP1061-14	86.756	52.96			1.4146	1.4454	NaN	1	0	Median	5757900	2171800	3586000	40	56	39	67	137;138	138		2	9606
ADEASELACPTPK	1	0	Unmodified	1387.6289	0.62894506	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					15.009	15.009	2	0.027439	4022	DP1061-11	76.143	39.718			NaN	NaN	NaN	0	0	Median	823040	0	823040	41	171	40	68	139	139		1	9606
ADEAYLIGR	0	1	Unmodified	1006.5084	0.50835964	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		16.813	16.813	2	2.0291E-10	5736	DP1061-12	131.03	83.374			0.70628	0.74329	36.047	2	0	Median	69581000	36282000	33299000	42	89	41	69;70;71	140;141;142;143;144;145;146;147;148;149	142		10	9606
ADFAQACQDAGVR	0	1	Unmodified	1407.6201	0.62011171	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.11	1.59	2	2	1	1	3	15.949	15.949	2	1.1294000000000001E-24	5824	DP1061-13	155.26	127.06			0.85484	0.87363	5.6178	5	0	Median	333710000	173560000	160150000	43	89	42	72;73;74;75;76;77;78;79;80	150;151;152;153;154;155;156;157;158;159;160;161;162;163;164;165;166;167;168;169;170;171;172;173;174;175;176;177;178;179;180;181	169		32	9606
ADGELNVDSLITR	0	1	Acetyl (Protein N-term)	1443.7205	0.72053726	211	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	4	0				1		22.349	22.349	2	6.1851E-32	12527	DP1061-14	158.4	75.65			14.274	14.584	NaN	1	0	Median	29414000	2672200	26742000	44	211	43	81	182;183	183		2	9606
ADGYVLEGK	1	0	Unmodified	950.47091	0.4709115	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	14.724	14.724	2	0.017839	4875	DP1061-15	76.221	37.43			1.9486	1.7407	NaN	1	0	Median	6478200	2259500	4218700	45	212	44	82	184	184		1	9606
ADILEDKDGK	2	0	Unmodified	1102.5506	0.55061839	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3.5	0.5			1	1		12.614	12.614	2	6.0993E-09	2866	DP1061-14	128.86	105.79			1.2259	1.2966	9.2003	2	0	Median	34611000	14480000	20131000	46	188	45	83;84	185;186;187;188	188		4	9606
ADIQTER	0	1	Acetyl (Protein N-term)	873.41921	0.41921028	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	5	0					1	14.746	14.746	2	0.012354	4894	DP1061-15	100.19	28.05			NaN	NaN	NaN	0	0	Median	3583300	0	3583300	47	220	46	85	189;190	189		2	9606
ADKEAAFDDAVEER	1	1	Acetyl (Protein N-term)	1606.7111	0.71109479	281	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	1	0	1	4	0.707			1	2	1	17.367	17.367	2	3.4823E-12	7822	DP1061-13	157.56	138.78			NaN	NaN	NaN	0	0	Median	28442000	0	28442000	48	281	47	86;87;88;89	191;192;193;194;195	192		5	9606
ADLDKLNIDSIIQR	1	1	Acetyl (Protein N-term)	1654.889	0.88899957	142	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	4.25	0.433				3	1	22.151	22.151	2;3	1.0918E-117	12268	DP1061-15	282.21	221.81			NaN	NaN	NaN	0	0	Median	265490000	0	265490000	49	142	48	90;91;92;93	196;197;198;199;200;201;202	202		7	9606
ADNEKLDNQR	1	1	Acetyl (Protein N-term)	1243.5793	0.57929275	25	O00629	KPNA4	Importin subunit alpha-3	yes	yes	1	0	1	3	0			1			12.68	12.68	2	0.005502	2835	DP1061-13	125.68	67.452			NaN	NaN	NaN	0	0	Median	3141800	0	3141800	50	25	49	94	203;204	203		2	9606
ADPDVLTEVPAALKR	1	1	Acetyl (Protein N-term)	1635.8832	0.88318591	131	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	1	0	1	4	0				2		20.586	20.586	2	0.0014394	10803	DP1061-14	94.767	42.6			NaN	NaN	NaN	0	0	Median	0	0	0	51	131	50	95;96	205;206	206		2	9606
ADRDESSPYAAMLAAQDVAQR	0	2	Oxidation (M)	2280.0441	0.044073019	215	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	1	5	0					2	16.743	16.743	3	2.0473999999999998E-19	6849	DP1061-15	120.23	88.607			1.1488	1.1152	NaN	1	0	Median	11095000	4513200	6581600	52	215	51	97;98	207;208;209;210;211;212;213	211	236	7	9606
ADRDESSPYAAMLAAQDVAQR	0	2	Unmodified	2264.0492	0.049158397	215	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	18.838	18.838	3	0.03522	9094	DP1061-15	65.887	26.631			NaN	NaN	NaN	0	0	Median	0	0	0	53	215	51	99	214	214		1	9606
ADSLVEGTSSR	0	1	Unmodified	1120.536	0.53603095	365	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				13.381	13.381	2	0.025187	3032	DP1061-12	77.662	12.625			NaN	NaN	NaN	0	0	Median	0	0	0	54	365	52	100	215	215		1	9606
ADSWVEKEEPAPSN	1	0	Unmodified	1557.6947	0.69471644	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	1	2	0		1				15.989	15.989	2	1.1645E-05	4997	DP1061-12	120.77	95.554			NaN	NaN	NaN	0	0	Median	3798600	0	3798600	55	364	53	101	216;217;218	218		3	9606
ADTGLETSTR	0	1	Unmodified	1049.4989	0.49891717	179	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	3	0			2			12.575	12.575	2	0.030484	2730	DP1061-13	81.95	42.404			NaN	NaN	NaN	0	0	Median	0	0	0	56	179	54	102;103	219;220	220		2	9606
AEAEAQAEELSFPR	0	1	Unmodified	1546.7264	0.72635092	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.8	1.08	1	4	1	4		19.09	19.09	2;3	2.3307E-90	7669	DP1061-14	244.27	244.27			0.7925	0.83046	6.2129	4	0	Median	158860000	94149000	64708000	57	89	55	104;105;106;107;108;109;110;111;112;113	221;222;223;224;225;226;227;228;229;230;231;232;233;234;235;236;237;238;239;240;241;242;243;244;245;246;247	243		27	9606
AEAESLYQSK	1	0	Unmodified	1124.535	0.53496832	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.58	1	1		1	1	13.951	13.951	2	6.7654E-15	3176	DP1061-11	182.98	131.13		+	NaN	NaN	NaN	0	0	Median	24799000	24799000	0	58	60	56	114;115;116;117	248;249;250;251;252;253;254	249		7	9606
AEAESLYQSKYEELQITAGR	1	1	Unmodified	2285.1176	0.11755554	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	5	0					1	18.083	18.083	3	0.042161	8268	DP1061-15	66.264	34.967		+	NaN	NaN	NaN	0	0	Median	0	0	0	59	60	57	118	255	255		1	9606
AEAGAGSATEFQFR	0	1	Unmodified	1440.6634	0.66335673	168	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	5	0					4	17.12	17.12	2	3.3922E-09	7217	DP1061-15	112.94	65.71			2.8123	2.6415	NaN	1	0	Median	6872600	1618900	5253800	60	168	58	119;120;121;122	256;257;258;259;260	257		5	9606
AECRPAASENYMR	0	2	Unmodified	1553.6715	0.67149535	96	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		13.27	13.27	3	0.029	3539	DP1061-14	78.529	55.437			NaN	NaN	NaN	0	0	Median	1988800	0	1988800	61	96	59	123	261	261		1	9606
AEDKEWMPVTK	2	0	Oxidation (M)	1348.6333	0.63330216	97	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	1	4	0				1		13.795	13.795	3	0.00029308	4031	DP1061-14	88.021	88.021			1.4206	1.5745	NaN	1	0	Median	10562000	5124300	5437200	62	97	60	124	262;263	262	141	2	9606
AEDNADTLALVFEAPNQEK	1	0	Unmodified	2073.9855	0.98547873	92	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				1		21.064	21.064	2	2.5641000000000002E-33	11264	DP1061-14	146.27	132.19			1.9934	1.9039	NaN	1	0	Median	8409700	2816200	5593500	63	92	61	125	264;265;266;267	265		4	9606
AEEEVAKLEKHLMLLR	2	1	Acetyl (Protein N-term);Oxidation (M)	1966.0557	0.055747325	430	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	1	1	2	3	0			1			19.272	19.272	2	0.018654	10145	DP1061-13	65.232	20.806			NaN	NaN	NaN	0	0	Median	8580100	0	8580100	64	430	62	126	268;269;270	270	440	3	9606
AEEGIAAGGVMDVNTALQEVLK	1	0	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	121	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	5	0					1	25.071	25.071	2	4.3096999999999997E-38	14976	DP1061-15	153.23	153.23			1.7703	1.5814	NaN	1	0	Median	3173700	979710	2193900	65	121	63	127	271;272;273;274;275;276	275	164	6	9606
AEFAAPSTDAPDK	1	0	Unmodified	1318.6041	0.60411052	385	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				1		15.006	15.006	2	0.045384	5276	DP1061-14	70.728	34.172			NaN	NaN	NaN	0	0	Median	0	0	0	66	385	64	128	277	277		1	9606
AELNEFLTR	0	1	Unmodified	1091.5611	0.56112349	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		18.214	18.214	2	6.2664E-08	8229	DP1061-14	128.69	73.01			1.4372	1.4685	NaN	1	0	Median	22681000	9633500	13047000	67	117	65	129	278;279;280;281	280		4	9606
AELQMLLEEEIPSGKR	1	1	Acetyl (Protein N-term);Oxidation (M)	1899.9612	0.96117824	363	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	1	3	0			1			23.134	23.134	2	9.9845E-23	14914	DP1061-13	141.58	108.04			1.2888	1.3211	NaN	1	0	Median	3829600	1771600	2058000	68	363	66	130	282;283	283	384	2	9606
AEPASVAAESLAGSR	0	1	Acetyl (Protein N-term)	1456.7158	0.71578623	421	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	1	0	0	4	0				2		19.561	19.561	2	4.4631E-06	9635	DP1061-14	118.87	81.358			NaN	NaN	NaN	0	0	Median	10662000	0	10662000	69	421	67	131;132	284;285;286	285		3	9606
AERGELDLTGAK	1	1	Acetyl (Protein N-term)	1300.6623	0.6622941	96	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	1	0	1	4	0				1		16.491	16.491	2	0.013265	6433	DP1061-14	76.165	34.716			NaN	NaN	NaN	0	0	Median	5021200	0	5021200	70	96	68	133	287;288	287		2	9606
AETECQNTEYQQLLDIK	1	0	Unmodified	2081.9575	0.95754942	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.5	0.5			2	2		19.548	19.548	2	1.4054E-39	10589	DP1061-13	192.86	157.22		+	NaN	NaN	NaN	0	0	Median	12789000	12789000	0	71	15	69	134;135;136;137	289;290;291;292;293	291		5	9606
AETLEFNDVYQEVK	1	0	Acetyl (Protein N-term)	1725.8097	0.8097462	280	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	3	0			1			22.505	22.505	2	1.0696999999999998E-52	14162	DP1061-13	229.68	166.27			NaN	NaN	NaN	0	0	Median	8710700	0	8710700	72	280	70	138	294;295	295		2	9606
AEVNTIPGFDGVVK	1	0	Unmodified	1444.7562	0.75619449	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.966	18.966	2	1.1323E-05	9638	DP1061-13	97.452	68.496			1.1336	1.1673	NaN	1	0	Median	28633000	12804000	15829000	73	67	71	139	296;297;298	296		3	9606
AEVNTIPGFDGVVKDAEEAVR	1	1	Unmodified	2215.1121	0.11207623	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.959	20.959	3	6.794299999999999E-28	12235	DP1061-13	140.32	121.39			0.87518	0.89711	NaN	1	0	Median	44468000	26786000	17682000	74	67	72	140	299;300;301;302	301		4	9606
AEVQVLVLDGR	0	1	Acetyl (Protein N-term)	1239.6823	0.68230126	151	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	5	0					1	22.624	22.624	2	1.4655E-08	12928	DP1061-15	135.99	95.263			1.9073	1.7914	NaN	1	0	Median	13556000	4470300	9085400	75	151	73	141	303;304	304		2	9606
AEYLASIFGTEK	1	0	Acetyl (Protein N-term)	1369.6765	0.67654718	267	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	0	4	0				1		26.046	26.046	2	0.00015715	15149	DP1061-14	115.7	82.437			NaN	NaN	NaN	0	0	Median	1991200	0	1991200	76	267	74	142	305;306	305		2	9606
AFADAMEVIPSTLAENAGLNPISTVTELR	0	1	Oxidation (M)	3045.5329	0.53286642	184	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	3	0			1			23.485	23.485	3	0.0043339	15332	DP1061-13	57.845	23.592			NaN	NaN	NaN	0	0	Median	2178200	0	2178200	77	184	75	143	307	307	196	1	9606
AFAVVASALGIPSLLPFLK	1	0	Unmodified	1913.139	0.13900667	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				26.268	26.268	2	1.3179E-18	16037	DP1061-12	156	132.54			NaN	NaN	NaN	0	0	Median	2343300	0	2343300	78	46	76	144	308;309	309		2	9606
AFENDVDALCNLR	0	1	Unmodified	1535.7038	0.70384134	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.1	0.3			9	1		26.146	26.146	2	6.2706000000000005E-68	10313	DP1061-13	205.59	169.27			1.03	1.0511	10.242	6	0	Median	292860000	134900000	157960000	79	68	77	145;146;147;148;149;150;151;152;153;154	310;311;312;313;314;315;316;317;318;319;320;321;322;323;324;325;326;327;328;329;330;331	311		21	9606
AFIPAIDSFGFETDLR	0	1	Unmodified	1797.8938	0.8937506	316	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				23.42	23.42	2	6.8554E-06	13038	DP1061-12	122.33	61.113			NaN	NaN	NaN	0	0	Median	6901500	0	6901500	80	316	78	155	332;333	333		2	9606
AFITNIPFDVK	1	0	Unmodified	1263.6863	0.68632401	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			20.781	20.781	2	1.1659000000000001E-27	12002	DP1061-13	166.34	166.34			1.1116	1.1447	NaN	1	0	Median	41536000	19059000	22477000	81	188	79	156	334;335;336;337;338	337		5	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	1	0	Unmodified	2751.4596	0.45956554	71	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				2		21.88	21.88	2;3	5.544099999999999E-22	12151	DP1061-14	118.42	118.42			1.1357	1.0847	18.345	2	0	Median	15398000	6586700	8811200	82	71	80	157;158	339;340;341;342;343;344;345;346;347;348;349;350;351;352;353	341		15	9606
AFQLEEGEETEPDCK	1	0	Unmodified	1780.7462	0.74615966	145	P38432	COIL	Coilin	yes	yes	0	0	0	4	0				1		16.688	16.688	2	0.0052831	6706	DP1061-14	91.937	69.404			NaN	NaN	NaN	0	0	Median	0	0	0	83	145	81	159	354	354		1	9606
AFVDFLSDEIKEER	1	1	Unmodified	1696.8308	0.83081599	277	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	4	0				1		20.673	20.673	3	3.8531E-49	10831	DP1061-14	177.42	177.42			4.9162	4.9588	NaN	1	0	Median	11215000	2300600	8914700	84	277	82	160	355;356;357;358;359	356		5	9606
AFYGDTLVTGFAR	0	1	Unmodified	1416.7038	0.70376498	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.05	0.223			18	1		27.713	27.713	2	6.982900000000001E-68	11512	DP1061-13	205.18	158.71			0.95794	0.97567	7.7919	4	0	Median	614840000	298990000	315840000	85	417	83	161;162;163;164;165;166;167;168;169;170;171;172;173;174;175;176;177;178;179	360;361;362;363;364;365;366;367;368;369;370;371;372;373;374;375;376;377;378;379;380;381;382;383;384;385;386;387;388;389	363		30	9606
AFYPEEISSMVLTK	1	0	Oxidation (M)	1629.796	0.79601039	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			19.803	19.803	2	4.4168E-05	10609	DP1061-13	88.338	61.588			4.658	4.7969	NaN	1	0	Median	52766000	8937100	43829000	86	85	84	180	390;391;392;393;394	391	109	5	9606
AFYPEEISSMVLTK	1	0	Unmodified	1613.8011	0.80109577	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			21.414	21.414	2	1.7502E-05	12767	DP1061-13	94.82	94.82			3.7739	3.8864	NaN	1	0	Median	26424000	4927500	21496000	87	85	84	181	395;396;397	396		3	9606
AGAAGGPEEEAEKPVK	2	0	Unmodified	1538.7577	0.75765105	372	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					1	12.445	12.445	3	4.9681E-10	2757	DP1061-15	142.38	94.955			NaN	NaN	NaN	0	0	Median	16197000	0	16197000	88	372	85	182	398;399	399		2	9606
AGAIAPCEVTVPAQNTGLGPEK	1	0	Unmodified	2179.0943	0.094317676	71	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				2		17.698	17.698	2	9.233600000000001E-27	7701	DP1061-14	130.47	103.33			1.5384	1.4693	NaN	1	0	Median	6620900	2486700	4134200	89	71	86	183;184	400;401;402;403;404;405;406	400		7	9606
AGELTEDEVER	0	1	Unmodified	1246.5677	0.56772501	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	14.48	14.48	2	1.5201E-06	4635	DP1061-15	114.97	77.241			1.2475	1.1717	NaN	1	0	Median	19837000	9963800	9873200	90	217	87	185	407;408;409	407		3	9606
AGFAGDDAPR	0	1	Unmodified	975.44101	0.44100836	199;249;228	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63267;P68133;P68032;P62736;P63261	ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		13.709	13.709	2	0.0047747	3971	DP1061-14	83.948	58.121			1.3035	1.3319	NaN	1	0	Median	9745400	4065500	5679900	91	199;228;249	88	186	410;411;412;413	413		4	9606
AGFWVGTAPLVAAGR	0	1	Acetyl (Protein N-term)	1513.8041	0.80414773	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	1	0	0	3	0			1			25.117	25.117	2	0.013851	16823	DP1061-13	82.261	42.202			NaN	NaN	NaN	0	0	Median	1845000	0	1845000	92	67	89	187	414	414		1	9606
AGGEAGVTLGQPHLSR	0	1	Acetyl (Protein N-term)	1590.8114	0.81141795	154	Q2VIR3;P41091	EIF2S3L;EIF2S3	Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3	yes	no	1	0	0	3	0			2			17.192	17.192	2	0.0041842	7620	DP1061-13	89.301	36.288			NaN	NaN	NaN	0	0	Median	0	0	0	93	154	90	188;189	415;416	415		2	9606
AGLELLSDQGYR	0	1	Acetyl (Protein N-term)	1362.6779	0.67794416	419	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	1	0	0	4	0				1		22.8	22.8	2	0.00016637	12841	DP1061-14	114.4	114.4			NaN	NaN	NaN	0	0	Median	10275000	0	10275000	94	419	91	190	417;418	417		2	9606
AGLQFPVGR	0	1	Unmodified	943.52395	0.52395013	64;84;83	Q93077;Q7L7L0;P04908;Q96QV6;P16104;Q8IUE6;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;Q71UI9;P0C0S5	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AA;H2AFX;HIST2H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFV;H2AFZ	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.V;Histone H2A.Z	no	no	0	0	0	5	0					1	17.501	17.501	2	0.00024895	7500	DP1061-15	111.04	57.481			1.3642	1.2814	NaN	1	0	Median	147550000	64002000	83549000	95	64;84;83	92	191	419;420;421	420		3	9606
AGNGQWASVIR	0	1	Unmodified	1157.5942	0.59415496	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					17.311	17.311	2	0.0045934	5791	DP1061-11	106.88	62.531			NaN	NaN	NaN	0	0	Median	4934600	0	4934600	96	321	93	192	422	422		1	9606
AGTHILCIK	1	0	Unmodified	1011.5535	0.55353569	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				14.625	14.625	2	0.019217	3944	DP1061-12	108.46	42.11			NaN	NaN	NaN	0	0	Median	22312000	10148000	12165000	97	89	94	193;194	423;424;425	424		3	9606
AGTVVLDDVELR	0	1	Acetyl (Protein N-term)	1327.6983	0.69834526	119	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	1	0	0	2	0		1				22.504	22.504	2	0.0090125	11885	DP1061-12	82.029	12.075			NaN	NaN	NaN	0	0	Median	0	0	0	98	119	95	195	426	426		1	9606
AGVNTVTTLVENKK	2	0	Unmodified	1472.8199	0.81985737	226	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		15.498	15.498	3	0.021291	5572	DP1061-14	71.279	42.49			NaN	NaN	NaN	0	0	Median	5270400	0	5270400	99	226	96	196	427	427		1	9606
AHEVGAQGGPPVAQVEQDLPISR	0	1	Unmodified	2354.1979	0.19787154	309	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	1	0	2					18.215	18.215	3	0.0068062	6763	DP1061-11	70.994	35.781			NaN	NaN	NaN	0	0	Median	0	0	0	100	309	97	197;198	428;429	429		2	9606
AHLLGSQACMESLR	0	1	Acetyl (Protein N-term);Oxidation (M)	1629.7603	0.76031036	340	Q569K6	CCDC157	Coiled-coil domain-containing protein 157	yes	yes	1	1	0	5	0					1	28.969	28.969	2	0.0384	17216	DP1061-15	57.348	20.924			NaN	NaN	NaN	0	0	Median	0	0	0	101	340	98	199	430	430	367	1	9606
AHQVVEDGYEFFAK	1	0	Unmodified	1638.7678	0.7678218	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.9	0.75			7	9	5	18.67	18.67	2;3	1.2649E-09	9463	DP1061-13	150.51	150.51			NaN	NaN	NaN	0	0	Median	557980000	0	557980000	102	142;210;211	99	200;201;202;203;204;205;206;207;208;209;210;211;212;213;214;215;216;217;218;219;220	431;432;433;434;435;436;437;438;439;440;441;442;443;444;445;446;447;448;449;450;451;452;453;454;455;456;457;458;459;460;461;462	436		32	9606
AHQVVEDGYEFFAKR	1	1	Unmodified	1794.8689	0.86893283	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	4	0.707			1	2	1	17.277	17.277	3;4	1.9322E-12	7266	DP1061-14	155.06	114.55			NaN	NaN	NaN	0	0	Median	53898000	0	53898000	103	142;210;211	100	221;222;223;224	463;464;465;466;467;468	465		6	9606
AIAELGIYPAVDPLDSTSR	0	1	Unmodified	1987.0262	0.026221336	73	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			21.652	21.652	2	0.0001294	13174	DP1061-13	80.967	67.782			0.62265	0.63705	NaN	1	0	Median	9256900	6255500	3001400	104	73	101	225	469;470;471	471		3	9606
AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFK	1	0	Unmodified	3950.0618	0.061825566	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				22.918	22.918	3	1.5664E-06	12374	DP1061-12	55.442	34.095			0.48512	0.50972	NaN	1	0	Median	7625600	4871900	2753700	105	89	102	226	472;473;474	473		3	9606
AIEDEGGNPDEIEITSEGNKK	2	0	Unmodified	2244.0394	0.039364797	324	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	1	2	0		1				15.806	15.806	3	0.0057851	4899	DP1061-12	83.423	55.09			NaN	NaN	NaN	0	0	Median	3814500	0	3814500	106	324	103	227	475;476	475		2	9606
AIGIGAYLVR	0	1	Unmodified	1031.6128	0.61276513	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2	0.632	1	3	1			19.611	19.611	2	1.1661E-18	8141	DP1061-11	143.85	103.79			0.95836	0.944	7.456	3	0	Plateau	578970000	296010000	282960000	107	287;26	104	228;229;230;231;232	477;478;479;480;481;482;483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505	479		29	9606
AIGPHDVLATLLNNLK	1	0	Unmodified	1687.9621	0.96210494	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				23.424	23.424	2;3	6.2477E-13	12814	DP1061-12	158.34	133.83			NaN	NaN	NaN	0	0	Median	43825000	0	43825000	108	46	105	233;234	506;507;508;509;510	508		5	9606
AIGYLIPLMDAEYANYYTR	0	1	Oxidation (M)	2252.0824	0.082356006	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	0	2	0		2				22.607	22.607	2;3	0.00080676	11982	DP1061-12	99.021	73.656			NaN	NaN	NaN	0	0	Median	52939000	0	52939000	109	46	106	235;236	511;512;513	512	45	3	9606
AIGYLIPLMDAEYANYYTR	0	1	Unmodified	2236.0874	0.087441384	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				24.123	24.123	2	5.6962E-10	13775	DP1061-12	131.26	83.652			NaN	NaN	NaN	0	0	Median	4625700	0	4625700	110	46	106	237	514;515;516;517	514		4	9606
AILVDLEPGTMDSVR	0	1	Oxidation (M)	1630.8236	0.82362212	77;305;297	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	4	0.816			1	1	1	19.069	19.069	2	5.4072E-06	9225	DP1061-14	92.112	53.398			1.5062	1.5345	10.52	3	0	Median	113240000	42387000	70857000	111	77;305;297	107	238;239;240	518;519;520;521;522;523;524;525;526;527	525	92	10	9606
AILVDLEPGTMDSVR	0	1	Unmodified	1614.8287	0.8287075	77;305;297	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.67	0.471			1	2		20.288	20.288	2	4.2133E-29	11344	DP1061-13	154.15	101.9			1.3878	1.4179	NaN	1	0	Median	42735000	19539000	23197000	112	77;305;297	107	241;242;243	528;529;530;531;532;533;534	531		7	9606
AINQQTGAFVEISR	0	1	Unmodified	1532.7947	0.79470526	382	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2	0		1				17.487	17.487	2	0.010337	6352	DP1061-12	86.114	33.389			NaN	NaN	NaN	0	0	Median	0	0	0	113	382	108	244	535	535		1	9606
AISEAQESVTK	1	0	Unmodified	1161.5877	0.58773217	348	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	3	0			1			12.849	12.849	2	0.036926	3052	DP1061-13	74.165	1.935			NaN	NaN	NaN	0	0	Median	0	0	0	114	348	109	245	536	536		1	9606
AISSSAISR	0	1	Unmodified	890.48214	0.48214489	332	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	3	0			1			12.878	12.878	2	0.0053642	2983	DP1061-13	93.649	10.443			13.812	14.124	NaN	1	0	Median	33064000	3085900	29978000	115	332	110	246	537;538	537		2	9606
AITGASLADIMAK	1	0	Oxidation (M)	1276.6697	0.66968766	261	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	0	5	0					1	17.19	17.19	2	0.00073156	7303	DP1061-15	80.763	80.763			1.671	1.4928	NaN	1	0	Median	24929000	9258500	15671000	116	261	111	247	539;540	539	267	2	9606
AITGASLADIMAK	1	0	Unmodified	1260.6748	0.67477304	261	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	19.414	19.414	2	3.7755E-07	9658	DP1061-15	103.31	84.781			1.3568	1.2121	NaN	1	0	Median	6514100	2849100	3665100	117	261	111	248	541;542;543;544	544		4	9606
AIVAGDQNVEYK	1	0	Unmodified	1305.6565	0.65648044	302	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		15.055	15.055	2	7.4439E-05	5179	DP1061-14	99.013	68.444			1.4032	1.3402	NaN	1	0	Median	10604000	4531500	6072800	118	302	112	249	545;546;547;548	546		4	9606
AIVAIENPADVSVISSR	0	1	Unmodified	1739.9418	0.94176342	0	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		19.485	19.485	2	3.4874E-06	9645	DP1061-14	120.55	64.571			NaN	NaN	NaN	0	0	Median	0	0	0	119	0	113	250	549	549		1	9606
AIVEFLSNLAR	0	1	Unmodified	1231.6925	0.69247202	288	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	3	0			1			21.716	21.716	2	0.020099	13219	DP1061-13	81.525	34.327			NaN	NaN	NaN	0	0	Median	0	0	0	120	288	114	251	550	550		1	9606
AIVNPMDMQTSGALLRTCVK	1	1	2 Oxidation (M)	2236.1014	0.10139366	130	P28336	NMBR	Neuromedin-B receptor	yes	yes	0	2	1	5	0					1	36.736	36.736	3	0.041669	19413	DP1061-15	50.392	13.648			NaN	NaN	NaN	0	0	Median	2352100	2352100	0	121	130	115	252	551	551	170;171	1	9606
AIVNVIGMHK	1	0	Oxidation (M)	1096.6063	0.60629955	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	0	2	0		1				14.851	14.851	2	0.039288	4139	DP1061-12	84.498	44.431			NaN	NaN	NaN	0	0	Median	8815300	0	8815300	122	46	116	253	552;553	553	46	2	9606
ALAAAGYDVEK	1	0	Unmodified	1106.5608	0.56078914	99	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	0	4	0				1		15.188	15.188	2	2.3496E-08	5364	DP1061-14	118.71	79.749			1.1216	1.0713	NaN	1	0	Median	56315000	25064000	31251000	123	99	117	254	554;555;556;557;558	557		5	9606
ALAAAGYDVEKNNSR	1	1	Unmodified	1577.7798	0.77978347	99	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	1	4	0				2		14.01	14.01	2;3	2.3879000000000002E-27	4204	DP1061-14	131.37	60.392			1.1249	1.1347	4.3332	2	0	Median	15033000	7322800	7710700	124	99	118	255;256	559;560;561;562;563;564	561		6	9606
ALAVSDLNR	0	1	Unmodified	957.52434	0.52434406	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		15.954	15.954	2	2.0291E-10	4644	DP1061-12	131.03	59.154			0.99027	1.0422	40.665	4	0	Median	553680000	290750000	262930000	125	89	119	257;258;259;260;261	565;566;567;568;569;570;571;572;573;574;575;576;577;578;579;580	569		15	9606
ALEEANADLEVK	1	0	Unmodified	1300.6511	0.65106071	6;13	P02533;CON__P02533;CON__P19012;P19012;CON__Q6IFX2;CON__P08779;P08779	KRT14;KRT15;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16	no	no	0	0	0	1	0	1					16.043	16.043	2	0.014681	4684	DP1061-11	82.831	24.601		+	NaN	NaN	NaN	0	0	Median	2079500	2079500	0	126	6;13	120	262	581;582	581		2	9606
ALEESNYELEGK	1	0	Unmodified	1380.6409	0.64088996	15	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.41	1	1	1	1	1	15.809	15.809	2	2.6644E-08	4469	DP1061-11	163.64	103.2		+	NaN	NaN	NaN	0	0	Median	129140000	129140000	0	127	15	121	263;264;265;266;267	583;584;585;586;587;588;589;590;591;592;593	584		11	9606
ALEPTGQSGEAVK	1	0	Unmodified	1285.6514	0.65139506	373	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	3	0			1			13.347	13.347	2	0.0078782	3526	DP1061-13	86.344	32.57			NaN	NaN	NaN	0	0	Median	3843500	0	3843500	128	373	122	268	594;595	595		2	9606
ALESSIAPIVIFASNR	0	1	Unmodified	1686.9305	0.93047046	440	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			1			22.164	22.164	2	0.025475	13691	DP1061-13	83.204	21.424			NaN	NaN	NaN	0	0	Median	4404600	0	4404600	129	440	123	269	596	596		1	9606
ALGEPITLFGEGPAER	0	1	Unmodified	1655.8519	0.85188578	34	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			20.7	20.7	2	0.0014256	11904	DP1061-13	106.79	61.426			NaN	NaN	NaN	0	0	Median	17136000	0	17136000	130	34	124	270	597;598	598		2	9606
ALGGEDVR	0	1	Unmodified	815.41373	0.41373097	14	CON__P12763			yes	yes	0	0	0	3	0			2			12.583	12.583	2	0.00838	2738	DP1061-13	116.54	38.802		+	NaN	NaN	NaN	0	0	Median	0	0	0	131	14	125	271;272	599;600	600		2	9606
ALIAGGGAPEIELALR	0	1	Unmodified	1549.8828	0.88279198	184	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			20.858	20.858	2	6.6922E-06	12152	DP1061-13	122.45	72.947			NaN	NaN	NaN	0	0	Median	14700000	0	14700000	132	184	126	273	601;602	601		2	9606
ALIEMEKQQQDQVDR	1	1	Oxidation (M)	1845.8891	0.88907593	318	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	1	3	0			2			13.732	13.732	3	0.0018869	4011	DP1061-13	96.707	48.567			NaN	NaN	NaN	0	0	Median	0	0	0	133	318	127	274;275	603;604	604	337	2	9606
ALLDSSENCDR	0	1	Unmodified	1278.551	0.55102909	344	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		2				14.643	14.643	2	0.022127	3975	DP1061-12	79.986	37.877			NaN	NaN	NaN	0	0	Median	0	0	0	134	344	128	276;277	605;606	605		2	9606
ALNEINQFYQK	1	0	Unmodified	1366.6881	0.68811492	8	CON__P02663			yes	yes	0	0	0	4	0				1		17.747	17.747	2	0.0076136	7802	DP1061-14	90.601	44.629		+	NaN	NaN	NaN	0	0	Median	1694900	1694900	0	135	8	129	278	607	607		1	
ALPNNTSSSPQPK	1	0	Unmodified	1339.6732	0.67319314	62	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			12.561	12.561	2	0.0052476	2700	DP1061-13	90.149	38.956			NaN	NaN	NaN	0	0	Median	0	0	0	136	62	130	279	608	608		1	9606
ALQDLENAASGDATVR	0	1	Unmodified	1629.7958	0.79582747	420	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	0	0	4	0				1		17.612	17.612	2	7.1189E-09	7665	DP1061-14	128.54	51.614			NaN	NaN	NaN	0	0	Median	2369200	0	2369200	137	420	131	280	609;610;611;612;613	612		5	9606
ALQEGAEIVVCTPGR	0	1	Unmodified	1598.8086	0.80864076	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		2				17.405	17.405	2	2.1852E-05	6286	DP1061-12	122.39	70.947			NaN	NaN	NaN	0	0	Median	0	0	0	138	359	132	281;282	614;615	615		2	9606
ALQFLEEVK	1	0	Unmodified	1075.5914	0.59136099	150	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			19.083	19.083	2	0.021149	9889	DP1061-13	95.909	42.743			NaN	NaN	NaN	0	0	Median	7823900	0	7823900	139	150	133	283	616;617	617		2	9606
ALQQEQEIEQR	0	1	Unmodified	1370.679	0.6790068	360	Q8WXI9;Q86YP4	GATAD2B;GATAD2A	Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha	yes	no	0	0	0	3.5	0.5			1	1		14.234	14.234	2	0.0090234	4693	DP1061-13	90.108	39.501			NaN	NaN	NaN	0	0	Median	0	0	0	140	360	134	284;285	618;619	618		2	9606
ALQQLEK	1	0	Unmodified	828.47052	0.47051757	314	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				13.256	13.256	2	0.024477	2934	DP1061-12	97.068	5.4413			NaN	NaN	NaN	0	0	Median	2819600	0	2819600	141	314	135	286	620	620		1	9606
ALTVPELTQQMFDAK	1	0	Oxidation (M)	1706.8549	0.85492225	253;297	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3	0			1			19.306	19.306	2	3.1608E-06	10093	DP1061-13	96.334	6.9777			1.2357	1.2725	NaN	1	0	Median	70359000	29393000	40966000	142	253;297	136	287	621	621	259	1	9606
ALTVPELTQQMFDAK	1	0	Unmodified	1690.86	0.86000763	253;297	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		21.563	21.563	2	7.4449E-09	12998	DP1061-13	105.25	105.25			1.566	1.6127	NaN	1	0	Median	35911000	13117000	22795000	143	253;297	136	288;289	622;623;624	623		3	9606
ALTVPELTQQMFDSK	1	0	Unmodified	1706.8549	0.85492225	305	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	4	0				1		19.281	19.281	2	0.026151	9342	DP1061-14	59.84	7.449			1.6228	1.55	NaN	1	0	Median	5091500	1814800	3276700	144	305	137	290	625	625		1	9606
ALTVPELTQQVFDAK	1	0	Unmodified	1658.8879	0.88793694	77	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.33	0.471			2	1		21.299	21.299	2;3	6.5225E-29	12695	DP1061-13	126.48	108.78			1.4748	1.5188	3.6082	3	0	Plateau	124430000	46720000	77709000	145	77	138	291;292;293	626;627;628;629;630;631;632;633;634;635;636	632		11	9606
ALVAYYQK	1	0	Unmodified	954.51747	0.51746776	214	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					3	15.442	15.442	2	0.023075	5499	DP1061-15	105.27	18.334			NaN	NaN	NaN	0	0	Median	7658600	0	7658600	146	214	139	294;295;296	637;638;639;640	637		4	9606
ALVDGPCTQVR	0	1	Unmodified	1214.6078	0.60775611	182	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	4	0				1		15.078	15.078	2	0.028146	5357	DP1061-14	76.228	30.226			NaN	NaN	NaN	0	0	Median	0	0	0	147	182	140	297	641	641		1	9606
ALVENCLVPDLWIR	0	1	Unmodified	1696.8971	0.89706184	314	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		2				22.919	22.919	2	3.0239E-06	12335	DP1061-12	118.28	56.935			NaN	NaN	NaN	0	0	Median	7032100	0	7032100	148	314	141	298;299	642;643;644;645	643		4	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	0	1	Unmodified	3135.3979	0.39788908	277	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				2		21.334	21.334	3	3.011E-14	11464	DP1061-14	135.25	123.17			NaN	NaN	NaN	0	0	Median	5112700	0	5112700	149	277	142	300;301	646;647;648;649;650	646		5	9606
ALVNCQYSSATFSTGER	0	1	Unmodified	1889.8578	0.8577758	419	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	5	0					1	17.169	17.169	2	5.4427E-18	7317	DP1061-15	162.48	97.241			NaN	NaN	NaN	0	0	Median	3838000	0	3838000	150	419	143	302	651;652	651		2	9606
ALVNQLHER	0	1	Unmodified	1078.5883	0.5883413	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			13.458	13.458	2;3	2.3497E-33	3645	DP1061-13	164.96	108.23			0.92718	0.94687	0.27354	2	0	Median	186350000	94406000	91940000	151	417	144	303;304	653;654;655;656;657;658;659;660	656		8	9606
ALVSHNGSLINVGSLLQR	0	1	Unmodified	1877.0483	0.048294182	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				19.63	19.63	3	0.01999	8654	DP1061-12	75.548	28.511			NaN	NaN	NaN	0	0	Median	4998200	0	4998200	152	364	145	305	661;662	662		2	9606
AMGEQAVALAR	0	1	Oxidation (M)	1131.5706	0.57064232	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		14.235	14.235	2	9.0398E-09	4401	DP1061-13	118.33	90.116			1.0658	1.0901	9.008	3	0	Median	440800000	206070000	234730000	153	67	146	306;307;308	663;664;665;666;667;668;669;670;671;672	669	70	10	9606
AMGEQAVALAR	0	1	Unmodified	1115.5757	0.5757277	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			15.716	15.716	2	5.4712E-13	5967	DP1061-13	133.23	86.809			0.74863	0.76322	NaN	1	0	Median	82253000	43837000	38416000	154	67	146	309	673;674	673		2	9606
AMGIMNSFVNDIFER	0	1	2 Oxidation (M)	1774.8018	0.80184082	75;44	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	2	0	5	0					4	21.089	21.089	2	1.6855000000000002E-29	11384	DP1061-15	151.98	125.27			1.454	1.3657	NaN	1	0	Median	142780000	55512000	87271000	155	44;75	147	310;311;312;313	675;676;677;678;679;680;681;682;683	677	40;41	9	9606
AMGIMNSFVNDIFER	0	1	Oxidation (M)	1758.8069	0.8069262	75;44	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	1	0	5	0					2	22.374	22.374	2	2.3755E-75	13158	DP1061-15	201.46	169.96			1.4701	1.3808	1.3747	2	0	Median	12962000	5318400	7643100	156	44;75	147	314;315	684;685;686;687;688;689;690	689	40;41	7	9606
AMSSGGSGGGVPEQEDSVLFR	0	1	Acetyl (Protein N-term);Oxidation (M)	2123.943	0.94296199	333	Q16637	SMN1	Survival motor neuron protein	yes	yes	1	1	0	4	0				1		20.416	20.416	2	0.00015929	10609	DP1061-14	99.566	48.355			NaN	NaN	NaN	0	0	Median	0	0	0	157	333	148	316	691	691	362	1	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Oxidation (M)	2533.118	0.11796624	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		19.022	19.022	2;3	5.18E-79	9788	DP1061-13	195.38	195.38			0.84583	0.86116	2.3091	3	0	Plateau	188450000	101610000	86832000	158	395	149	317;318;319	692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713	700	403	22	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Unmodified	2517.1231	0.12305162	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			3			19.842	19.842	3	0.00021344	10833	DP1061-13	73.796	61.946			1.1781	1.2075	NaN	1	0	Median	16415000	6300500	10114000	159	395	149	320;321;322	714;715;716;717	715		4	9606
AMTTGAIAAMLSTILYSR	0	1	Oxidation (M)	1885.9642	0.96415513	110	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	1	0	3	0			1			23.569	23.569	2	0.035482	15437	DP1061-13	83.182	33.832			NaN	NaN	NaN	0	0	Median	0	0	0	160	110	150	323	718	718	150	1	9606
ANPFGGASHAK	1	0	Unmodified	1055.5148	0.514842	216	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	12.411	12.411	2	0.018408	2705	DP1061-15	63.216	63.216			0.94008	0.83979	NaN	1	0	Median	15376000	6955100	8420400	161	216	151	324	719	719		1	9606
ANSNLVLQADR	0	1	Unmodified	1199.6258	0.62584901	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	2					15.314	15.314	2	0.012138	4234	DP1061-11	87.568	36.763			NaN	NaN	NaN	0	0	Median	0	0	0	162	48	152	325;326	720;721	720		2	9606
APGAEEDDSELQR	0	1	Unmodified	1415.6165	0.61646612	338	Q53F19	C17orf85	Uncharacterized protein C17orf85	yes	yes	0	0	0	3	0			1			13.808	13.808	2	3.6562E-05	4070	DP1061-13	131.09	106.74			NaN	NaN	NaN	0	0	Median	3550900	0	3550900	163	338	153	327	722;723	723		2	9606
APGAGLGQDR	0	1	Unmodified	940.47264	0.47264284	180	P50402	EMD	Emerin	yes	yes	0	0	0	4	0				1		12.548	12.548	2	0.012379	2744	DP1061-14	91.069	54.622			NaN	NaN	NaN	0	0	Median	5875800	0	5875800	164	180	154	328	724	724		1	9606
APGEQTVPALNLQNAFR	0	1	Unmodified	1824.9482	0.94824579	457	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					20.399	20.399	2	6.191E-06	8956	DP1061-11	122.33	71.191			NaN	NaN	NaN	0	0	Median	1523000	0	1523000	165	457	155	329	725	725		1	9606
APGTPHSHTKPYVR	1	1	Unmodified	1546.8005	0.80045934	276	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					1	12.403	12.403	3	5.2928E-07	2713	DP1061-15	101.39	79.528			1.2786	1.228	NaN	1	0	Median	11161000	3997100	7163900	166	276	156	330	726;727;728;729	726		4	9606
APILIATDVASR	0	1	Unmodified	1225.703	0.7030367	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			17.854	17.854	2	0.042865	8304	DP1061-13	57.348	35.262			3.6892	3.7741	NaN	1	0	Median	29371000	6976000	22395000	167	102	157	331	730	730		1	9606
APSTYGGGLSVSSSR	0	1	Unmodified	1424.6896	0.68957148	6	P02533;CON__P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1	0	2					15.313	15.313	2	0.00039437	4239	DP1061-11	112.84	69.333		+	NaN	NaN	NaN	0	0	Median	0	0	0	168	6	158	332;333	731;732	732		2	9606
AQAAAPASVPAQAPK	1	0	Unmodified	1376.7412	0.74121312	169	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	5	0					1	13.646	13.646	2	1.3274E-06	3955	DP1061-15	101.35	101.35			1.2377	1.1056	NaN	1	0	Median	6603300	3131100	3472100	169	169	159	334	733;734;735	734		3	9606
AQAALQAQQVNR	0	1	Unmodified	1296.6898	0.68984626	177	P49848	TAF6	Transcription initiation factor TFIID subunit 6	yes	yes	0	0	0	3	0			1			13.197	13.197	2	0.0050323	3409	DP1061-13	111.06	79.19			NaN	NaN	NaN	0	0	Median	0	0	0	170	177	160	335	736	736		1	9606
AQAVHPGYGFLSENK	1	0	Unmodified	1616.7947	0.79470526	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			3			16.224	16.224	2;3	6.691E-38	6471	DP1061-13	182.23	163.66			0.93043	0.95817	0.45621	2	0	Median	102740000	56519000	46221000	171	67	161	336;337;338	737;738;739;740;741;742;743;744;745;746	742		10	9606
AQAVHPGYGFLSENKEFAR	1	1	Unmodified	2120.0439	0.043937085	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.6	0.8			3	1	1	16.982	16.982	3;4	4.9669E-34	7225	DP1061-13	148.52	130.28			0.93027	0.92305	17.042	4	0	Median	325290000	164660000	160630000	172	67	162	339;340;341;342;343	747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772	754		26	9606
AQCPIVER	0	1	Unmodified	971.48585	0.48585006	167	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	13.087	13.087	2	0.030071	3394	DP1061-15	77.282	41.097			1.6907	1.588	NaN	1	0	Median	5386000	1809200	3576900	173	167	163	344	773	773		1	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term);Oxidation (M)	1459.6362	0.6361557	242	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	1	5	0					1	12.408	12.408	2	4.9125E-08	2712	DP1061-15	111.5	99.964			1.3005	1.2491	NaN	1	0	Median	15497000	6776300	8721100	174	242	164	345	774;775;776;777	774	250	4	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term)	1443.6412	0.64124108	242	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	5	0					1	13.475	13.475	2	5.1604000000000005E-24	3746	DP1061-15	146.71	112.5			1.1585	1.1127	NaN	1	0	Median	6487000	2915300	3571700	175	242	164	346	778;779;780;781;782	780		5	9606
AQDTELAAYLENR	0	1	Unmodified	1492.7158	0.71578623	299	Q13574	DGKZ	Diacylglycerol kinase zeta	yes	yes	0	0	0	1.5	0.5	1	1				24.454	24.454	2	0.0052058	12055	DP1061-11	72.79	26.184			0.80998	0.87906	5.5085	2	0	Median	6060000	3021000	3039000	176	299	165	347;348	783;784	783		2	9606
AQEIAMQNR	0	1	Unmodified	1059.5131	0.51312744	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	12.985	12.985	2	4.3782E-24	3265	DP1061-14	162.5	117.42			0.91733	0.94135	4.853	3	0	Plateau	242370000	125290000	117080000	177	417	166	349;350;351	785;786;787;788;789;790;791;792	790		8	9606
AQEPESGLSEETQVK	1	0	Unmodified	1630.7686	0.76860967	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.916	14.916	2	0.050131	3927	DP1061-11	70.089	43.575			NaN	NaN	NaN	0	0	Median	0	0	0	178	260	167	352	793	793		1	9606
AQFEGIVTDLIR	0	1	Unmodified	1360.7351	0.73506511	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.448	21.448	2	6.8474E-17	12816	DP1061-13	140.49	96.136			2.5217	2.577	NaN	1	0	Median	40070000	12201000	27869000	179	146	168	353	794;795;796;797	794		4	9606
AQIAGYLYGVSPPDNPQVK	1	0	Unmodified	2016.0316	0.031641064	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					19.42	19.42	2	5.9105E-06	7929	DP1061-11	118.24	88.236			NaN	NaN	NaN	0	0	Median	2394600	0	2394600	180	347	169	354	798;799;800;801	799		4	9606
AQIHDLVLVGGSTR	0	1	Unmodified	1464.8049	0.80487601	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			2			16.693	16.693	2;3	2.4926E-05	7070	DP1061-13	96.734	96.734			4.5316	4.6285	7.5679	2	0	Median	111480000	20913000	90564000	181	85	170	355;356	802;803;804;805;806;807;808	806		7	9606
AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR	1	1	Oxidation (M)	3282.6047	0.60466793	243	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	1	4	0				1		21.204	21.204	3	0.021455	11457	DP1061-14	58.08	33.451			NaN	NaN	NaN	0	0	Median	0	0	0	182	243	171	357	809	809	251	1	9606
AQPTTLVLPPQYVDDVISR	0	1	Unmodified	2111.1263	0.12626973	346	Q6P2C8	MED27	Mediator of RNA polymerase II transcription subunit 27	yes	yes	0	0	0	4	0				1		21.569	21.569	2	2.0994E-06	11836	DP1061-14	124.16	74.018			NaN	NaN	NaN	0	0	Median	2233200	0	2233200	183	346	172	358	810;811;812	812		3	9606
AQVAMSTLPVEDEESSESR	0	1	Acetyl (Protein N-term);Oxidation (M)	2121.9372	0.93720791	258	P78347	GTF2I	General transcription factor II-I	yes	yes	1	1	0	2	0		2				18.869	18.869	2	1.5156E-07	7745	DP1061-12	123.38	88.18			NaN	NaN	NaN	0	0	Median	0	0	0	184	258	173	359;360	813;814	813	262	2	9606
AQVIYTR	0	1	Unmodified	849.47085	0.47085192	235	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	13.339	13.339	2	0.002209	3630	DP1061-15	101.64	56.562			1.6035	1.5061	NaN	1	0	Median	11635000	4748600	6886700	185	235	174	361	815	815		1	9606
AQVVHLLSTMDSPAST	0	0	Oxidation (M)	1671.8138	0.81378572	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.329	17.329	2	1.4919E-08	6010	DP1061-11	129	91.284			NaN	NaN	NaN	0	0	Median	0	0	0	186	26	175	362	816;817	817	16	2	9606
AQVVHLLSTMDSPAST	0	0	Unmodified	1655.8189	0.8188711	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.851	18.851	2	0.03929	7411	DP1061-11	77.062	19.889			NaN	NaN	NaN	0	0	Median	0	0	0	187	26	175	363	818	818		1	9606
AQYEDIAQK	1	0	Unmodified	1064.5138	0.51383895	60	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	5	0					1	13.7	13.7	2	0.023063	3999	DP1061-15	90.37	57.557		+	NaN	NaN	NaN	0	0	Median	22836000	22836000	0	188	60	176	364	819	819		1	9606
AQYEEIAQR	0	1	Unmodified	1106.5356	0.53563702	17	CON__P35908v2;P35908;CON__P35908;Q01546;CON__P19013;P19013	KRT2;KRT76;KRT4	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 4	no	no	0	0	0	3.33	1.7	1			1	1	14.221	14.221	2	0.014567	4301	DP1061-15	125.31	83.662		+	NaN	NaN	NaN	0	0	Median	52413000	52413000	0	189	17	177	365;366;367	820;821;822;823;824	824		5	9606
AQYYLPDGSTIEIGPSR	0	1	Unmodified	1865.9159	0.9159426	201	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	4	0				1		21.338	21.338	2	0.017996	11596	DP1061-14	78.763	41.819			NaN	NaN	NaN	0	0	Median	0	0	0	190	201	178	368	825	825		1	9606
ARDEFAEDR	0	2	Unmodified	1107.4945	0.49450049	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.514	12.514	2	0.00016973	2029	DP1061-11	115.23	77.146			0.86507	0.88321	NaN	1	0	Median	5855500	2990600	2864900	191	26	179	369	826	826		1	9606
ARFEELNADLFR	0	2	Unmodified	1479.747	0.74702678	88	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			2			18.97	18.97	2;3	5.0864E-05	9978	DP1061-13	73.36	73.36			6.1774	6.3025	NaN	1	0	Median	50818000	3227800	47591000	192	88	180	370;371	827;828;829	827		3	9606
ASALEQFVNSVR	0	1	Acetyl (Protein N-term)	1361.6939	0.69392858	437	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	1	0	0	4	0				1		25.055	25.055	2	0.0011295	14452	DP1061-14	97.472	27.216			NaN	NaN	NaN	0	0	Median	721150	0	721150	193	437	181	372	830;831	830		2	9606
ASAVSPANLPAVLLQPR	0	1	Acetyl (Protein N-term)	1744.9836	0.98356866	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	3	1.31	1	2	1	2	1	24.021	24.021	2;3	1.3733E-10	13606	DP1061-14	137.89	99.955			NaN	NaN	NaN	0	0	Median	36059000	0	36059000	194	185	182	373;374;375;376;377;378;379	832;833;834;835;836;837;838;839;840;841;842	839		11	9606
ASGNYATVISHNPETK	1	0	Unmodified	1687.8166	0.81656291	243	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4	0				1		14.433	14.433	3	2.4092E-07	4650	DP1061-14	100.4	100.4			1.4485	1.3835	NaN	1	0	Median	11424000	4092500	7331600	195	243	183	380	843;844	844		2	9606
ASGPPVSELITK	1	0	Unmodified	1197.6605	0.66050319	99	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	0	4	0				1		16.917	16.917	2	0.0064398	6791	DP1061-14	72.096	43.697			0.9975	0.95273	NaN	1	0	Median	22709000	12719000	9989900	196	99	184	381	845;846	846		2	9606
ASMQQQQQLASAR	0	1	Oxidation (M)	1461.6994	0.69942466	453	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		12.489	12.489	2	3.5416E-32	2675	DP1061-14	158.08	100.53			1.0157	1.0378	NaN	1	0	Median	15606000	7507200	8098300	197	453	185	382	847;848;849;850	849	448	4	9606
ASMQQQQQLASAR	0	1	Unmodified	1445.7045	0.70451004	453	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	4	0				1		13.526	13.526	2	2.4924E-11	3772	DP1061-14	121.9	121.9			0.92947	0.94969	NaN	1	0	Median	2575100	1424400	1150700	198	453	185	383	851;852;853	853		3	9606
ASNGDAWVEAHGK	1	0	Unmodified	1340.6109	0.61092723	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			2			13.559	13.559	2;3	0.0054535	3797	DP1061-13	88.596	54.635			2.2331	2.2996	NaN	1	0	Median	23751000	6241400	17510000	199	146	186	384;385	854;855;856	856		3	9606
ASNVTNKTDPR	1	1	Acetyl (Protein N-term)	1243.6157	0.61567826	79	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	1	0	1	4	0				1		12.773	12.773	2	0.011474	3017	DP1061-14	78.516	18.585			NaN	NaN	NaN	0	0	Median	0	0	0	200	79	187	386	857	857		1	9606
ASPSPTDPVVPAVPIGPPPAGFR	0	1	Unmodified	2225.1845	0.18445331	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.436	2	17	2			26.495	26.495	2;3	1.6476000000000002E-77	10851	DP1061-12	190.57	190.57			0.43845	0.47527	15.498	9	0	Median	368040000	264070000	103970000	201	89	188	387;388;389;390;391;392;393;394;395;396;397;398;399;400;401;402;403;404;405;406;407	858;859;860;861;862;863;864;865;866;867;868;869;870;871;872;873;874;875;876;877;878;879;880;881;882;883;884;885;886;887;888;889;890;891;892;893;894;895;896;897;898;899;900;901;902;903;904;905;906;907;908;909;910;911;912;913;914;915;916	868		59	9606
ASPSPTDPVVPAVPIGPPPAGFRDILLR	0	2	Unmodified	2835.5647	0.56469931	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				22.148	22.148	3	0.0010941	11377	DP1061-12	80.83	60.442			NaN	NaN	NaN	0	0	Median	6053800	6053800	0	202	89	189	408	917;918;919	917		3	9606
ASSSSASSAGALESSLDR	0	1	Unmodified	1681.7755	0.77548596	344	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		1				16.349	16.349	2	0.0075086	5383	DP1061-12	86.738	45.034			NaN	NaN	NaN	0	0	Median	0	0	0	203	344	190	409	920	920		1	9606
ASSVGNVADSTEPTKR	1	1	Acetyl (Protein N-term)	1659.8064	0.80639216	30	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	1	0	1	2	0		1				15.017	15.017	2	0.0033795	4328	DP1061-12	86.772	43.475			NaN	NaN	NaN	0	0	Median	0	0	0	204	30	191	410	921	921		1	9606
ASTALSNEQQAR	0	1	Unmodified	1274.6215	0.62149192	95	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	0	1					12.45	12.45	2	9.3562E-05	1954	DP1061-11	131.12	48.285			NaN	NaN	NaN	0	0	Median	1313600	0	1313600	205	95	192	411	922;923	922		2	9606
ATAAETSASEPEAESK	1	0	Acetyl (Protein N-term)	1619.7162	0.71623974	314	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	1	0	0	2	0		1				15.088	15.088	2	1.9258E-18	4308	DP1061-12	179.67	139.05			NaN	NaN	NaN	0	0	Median	3288000	0	3288000	206	314	193	412	924;925	924		2	9606
ATAGDTHLGGEDFDNR	0	1	Unmodified	1674.7234	0.72339081	85;101	P0DMV9;P0DMV8;P17066;P48741	HSPA1B;HSPA1A;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	3.33	0.471			2	1		14.658	14.658	2;3	1.4317E-63	4866	DP1061-13	195.77	195.77			4.7207	4.7969	11.27	3	0	Plateau	268030000	45905000	222120000	207	85;101	194	413;414;415	926;927;928;929;930;931	929		6	9606
ATEEKKPETEAAR	2	1	Acetyl (Protein N-term)	1500.742	0.74200098	208	P61964	WDR5	WD repeat-containing protein 5	yes	yes	1	0	2	4	0				1		12.398	12.398	3	0.0042071	2528	DP1061-14	77.279	42.505			NaN	NaN	NaN	0	0	Median	7474700	0	7474700	208	208	195	416	932	932		1	9606
ATENDIYNFFSPLNPVR	0	1	Unmodified	1995.969	0.96904081	192;134	P52597;P31943	HNRNPF;HNRNPH1	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	no	no	0	0	0	3.5	0.5			2	2		23.221	23.221	2;3	2.6555E-55	14934	DP1061-13	218.06	192.36			1.5128	1.5471	4.3407	2	0	Median	54097000	21402000	32695000	209	192;134	196	417;418;419;420	933;934;935;936;937;938;939;940;941	934		9	9606
ATIAGGGVIPHIHK	1	0	Unmodified	1369.783	0.78301836	83	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	14.746	14.746	3	0.00039107	4895	DP1061-15	77.74	77.74			1.2382	1.1061	NaN	1	0	Median	12232000	5518800	6713000	210	83	197	421	942;943	943		2	9606
ATLVDHGIR	0	1	Unmodified	980.54033	0.54032847	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.17	0.373	5	1				13.513	13.513	2;3	1.5369000000000001E-24	2968	DP1061-11	166.78	89.042			0.98993	1.033	12.393	2	0	Median	150240000	76487000	73755000	211	287	198	422;423;424;425;426;427	944;945;946;947;948;949;950;951;952;953;954	947		11	9606
ATLVDHGIRR	0	2	Unmodified	1136.6414	0.6414395	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	4					12.737	12.737	2;3	0.0011032	2230	DP1061-11	125.82	54.125			0.97257	0.99296	NaN	1	0	Median	2953400	1501100	1452200	212	287	199	428;429;430;431	955;956;957;958	957		4	9606
ATLYVTAIEDR	0	1	Unmodified	1250.6507	0.65066678	399	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	4	0				1		17.946	17.946	2	0.0091477	7989	DP1061-14	87.149	48.001			NaN	NaN	NaN	0	0	Median	2323000	0	2323000	213	399	200	432	959;960	959		2	9606
ATQAHSLSYAGCNFLR	0	1	Acetyl (Protein N-term)	1836.8577	0.85771622	444	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	1	0	0	4	0				1		19.019	19.019	2	0.0019576	9153	DP1061-14	97.86	56.32			NaN	NaN	NaN	0	0	Median	0	0	0	214	444	201	433	961	961		1	9606
ATQQQHDFTLTQTADGR	0	1	Unmodified	1916.8977	0.89766678	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.076	15.076	3	2.0742000000000001E-69	4016	DP1061-11	185.99	185.99			2.2426	2.4569	NaN	1	0	Median	4053500	1327500	2726000	215	260	202	434	962;963	963		2	9606
ATTATMATSGSAR	0	1	Acetyl (Protein N-term);Oxidation (M)	1282.5823	0.58232922	147	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	1	0	3	0			1			13.724	13.724	2	0.003689	3996	DP1061-13	86.014	50.07			NaN	NaN	NaN	0	0	Median	0	0	0	216	147	203	435	964	964	183	1	9606
ATVNTFGYIAK	1	0	Unmodified	1183.6237	0.62372375	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2.5	0.5		1	1			17.293	17.293	2	0.0041948	6125	DP1061-12	99.802	70.641			NaN	NaN	NaN	0	0	Median	45031000	0	45031000	217	46	204	436;437	965;966;967;968	965		4	9606
AVAQALEVIPR	0	1	Unmodified	1165.6819	0.68190733	172	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			18.056	18.056	2	0.0053885	8556	DP1061-13	113.62	67.196			NaN	NaN	NaN	0	0	Median	14002000	0	14002000	218	172	205	438	969;970	969		2	9606
AVCMLSNTTAIAEAWAR	0	1	Oxidation (M)	1879.8921	0.89205282	252	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	1	0	4	0.894			2	1	2	19.921	19.921	2;3	8.2399E-70	10931	DP1061-13	193.49	175.75			1.4752	1.5089	13.619	4	0	Median	95332000	35647000	59685000	219	252	206	439;440;441;442;443	971;972;973;974;975;976;977;978;979;980;981;982;983;984;985;986;987;988;989;990	973	255	20	9606
AVCMLSNTTAIAEAWAR	0	1	Unmodified	1863.8971	0.89713819	252	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	3	0			1			21.449	21.449	2	2.2202000000000002E-69	12818	DP1061-13	193.49	164.59			1.678	1.719	NaN	1	0	Median	19241000	7185900	12056000	220	252	206	444	991;992;993;994;995	992		5	9606
AVCMLSNTTAVAEAWAR	0	1	Oxidation (M)	1865.8764	0.87640275	400	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	3	0			1			19.169	19.169	2	3.1083E-33	9915	DP1061-13	150.49	133.27			1.3426	1.375	NaN	1	0	Median	20761000	7798000	12963000	221	400	207	445	996;997;998;999;1000	997	419	5	9606
AVDSLVPIGR	0	1	Unmodified	1025.5869	0.58694431	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.519	17.519	2	0.032741	8014	DP1061-13	80.165	38.717			NaN	NaN	NaN	0	0	Median	0	0	0	222	122	208	446	1001	1001		1	9606
AVDSQILPK	1	0	Unmodified	969.5495	0.54949617	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		15.252	15.252	2	0.050956	5459	DP1061-14	75.854	24.888			NaN	NaN	NaN	0	0	Median	0	0	0	223	272	209	447	1002	1002		1	9606
AVFPSIVGRPR	0	2	Unmodified	1197.6982	0.6982261	199;249;228	P60709;Q6S8J3;A5A3E0;P0CG38;P63267;P68133;P68032;P62736;P63261	ACTB;POTEE;POTEF;POTEI;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	4	0				1		16.6	16.6	3	0.012206	6569	DP1061-14	86.882	32.465			NaN	NaN	NaN	0	0	Median	6408700	0	6408700	224	199;228;249	210	448	1003	1003		1	9606
AVFVDLEPTVIDEVR	0	1	Unmodified	1700.8985	0.89850163	252;400	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3.75	0.829			2	1	1	21.616	21.616	2;3	1.7918E-61	13075	DP1061-13	159	134.92			1.3803	1.4056	11.328	4	0	Median	367790000	152550000	215240000	225	252;400	211	449;450;451;452	1004;1005;1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020	1008		17	9606
AVIGMTAGATGAFVGTPAEVALIR	0	1	Oxidation (M)	2288.2199	0.21985254	273	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	1	0	4	0				1		21.117	21.117	2	8.309300000000001E-64	11392	DP1061-14	174.24	154.13			1.5088	1.5417	NaN	1	0	Median	3787900	1458200	2329600	226	273	212	453	1021;1022;1023;1024;1025;1026;1027	1027	271	7	9606
AVLVDLEPGTMDSVR	0	1	Oxidation (M)	1616.808	0.80797206	253;335	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	no	no	0	1	0	3.5	0.5			1	1		18.474	18.474	2	0.00019203	8981	DP1061-13	84.718	59.421			1.6094	1.6421	6.4196	2	0	Median	102980000	38954000	64024000	227	253;335	213	454;455	1028;1029;1030;1031;1032;1033;1034;1035	1028	260	8	9606
AVLVDLEPGTMDSVR	0	1	Unmodified	1600.8131	0.81305744	253;335	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	no	no	0	0	0	3	0			1			19.709	19.709	2	9.9328E-14	10648	DP1061-13	118.77	83.879			1.2959	1.3244	NaN	1	0	Median	38877000	15291000	23586000	228	253;335	213	456	1036;1037;1038	1036		3	9606
AVNYVGAGTVEFIMDSK	1	0	Oxidation (M)	1815.8713	0.8713006	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		19.658	19.658	2;3	3.8389E-24	10533	DP1061-13	136.14	136.14			0.97011	0.92819	4.4936	3	0	Median	274050000	142430000	131610000	229	395	214	457;458;459	1039;1040;1041;1042;1043;1044;1045;1046;1047	1040	404	9	9606
AVNYVGAGTVEFIMDSK	1	0	Unmodified	1799.8764	0.87638598	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.324	21.324	2	1.0615E-09	12709	DP1061-13	134.68	101.28			NaN	NaN	NaN	0	0	Median	22290000	22290000	0	230	395	214	460	1048;1049	1048		2	9606
AVPETRPNHTIYINNLNEK	1	1	Acetyl (Protein N-term)	2264.1549	0.1549441	81	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	1	0	1	4	0				1		16.791	16.791	3	0.00049245	6839	DP1061-14	67.153	45.845			0.64514	0.65073	NaN	1	0	Median	8199300	4984200	3215200	231	81	215	461	1050;1051	1051		2	9606
AVPYPQR	0	1	Unmodified	829.44464	0.44463717	9	CON__P02666			yes	yes	0	0	0	3	1		1		1		13.436	13.436	2	0.03701	3526	DP1061-14	87.839	34.488		+	NaN	NaN	NaN	0	0	Median	30848000	30848000	0	232	9	216	462;463	1052;1053	1053		2	
AVTEQGHELSNEER	0	1	Unmodified	1597.7332	0.73322721	135	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	4	0				1		12.537	12.537	3	0.0024958	2731	DP1061-14	65.043	37.703			2.1193	2.1654	NaN	1	0	Median	3041100	1119600	1921500	233	135	217	464	1054;1055	1054		2	9606
AVVDLNGR	0	1	Unmodified	842.46102	0.46101552	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	3	0			1			14.312	14.312	2	0.014013	4670	DP1061-13	124.37	44.92			NaN	NaN	NaN	0	0	Median	11475000	0	11475000	234	390	218	465	1056;1057	1057		2	9606
AVVGVVAGGGR	0	1	Unmodified	940.54541	0.54541385	243	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4	0				1		14.109	14.109	2	0.0018284	4246	DP1061-14	136.16	80.651			NaN	NaN	NaN	0	0	Median	12680000	0	12680000	235	243	219	466	1058;1059	1059		2	9606
AVVISGAGK	1	0	Unmodified	800.4756	0.47560295	286	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		12.516	12.516	2	0.040355	2759	DP1061-14	77.282	16.989			NaN	NaN	NaN	0	0	Median	8558600	0	8558600	236	286	220	467	1060	1060		1	9606
AVVIVDDR	0	1	Unmodified	885.49198	0.4919813	116;318	P23246;Q15233	SFPQ;NONO	Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein	no	no	0	0	0	3	0			1			14.682	14.682	2	0.027993	4875	DP1061-13	98.418	40.954			NaN	NaN	NaN	0	0	Median	24640000	0	24640000	237	116;318	221	468	1061;1062;1063	1062		3	9606
AVVLWDVASGQVVR	0	1	Unmodified	1497.8304	0.83036248	402	Q9BRX9	WDR83	WD repeat domain-containing protein 83	yes	yes	0	0	0	4	0				1		20.681	20.681	2	0.02069	10894	DP1061-14	77.64	37.792			NaN	NaN	NaN	0	0	Median	0	0	0	238	402	222	469	1064	1064		1	9606
AVVMDLLR	0	1	Oxidation (M)	931.51609	0.51608756	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				20.356	20.356	2	0.0099848	5740	DP1061-11	79.469	43.975			0.96105	0.96268	7.2617	3	0	Plateau	347760000	176390000	171370000	239	287	223	470;471;472	1065;1066;1067;1068;1069;1070;1071;1072;1073	1067	274	9	9606
AVVMDLLR	0	1	Unmodified	915.52117	0.52117293	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.402	19.402	2	2.0669E-10	7959	DP1061-11	139.31	69.881			0.96663	1.0075	9.1711	2	0	Median	164790000	83266000	81524000	240	287	223	473;474	1074;1075;1076;1077;1078	1077		5	9606
AVVVNAAQLASYSQSK	1	0	Unmodified	1634.8628	0.86278482	273	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		17.857	17.857	2	5.0913E-06	7892	DP1061-14	123.64	80.357			NaN	NaN	NaN	0	0	Median	3680600	0	3680600	241	273	224	475	1079;1080	1080		2	9606
AYGGAYDVMSSK	1	0	Oxidation (M)	1263.5442	0.5441528	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			14.247	14.247	2	0.00064538	4570	DP1061-13	84.198	74.401			1.1242	1.1577	NaN	1	0	Median	66284000	32706000	33578000	242	68	225	476	1081;1082;1083;1084	1084	82	4	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Oxidation (M)	2765.2789	0.27890034	252	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	1	0	3	0			1			18.85	18.85	3	1.6206E-13	9573	DP1061-13	110.91	92.19			1.561	1.6075	NaN	1	0	Median	24910000	9812000	15098000	243	252	226	477	1085;1086;1087;1088;1089	1086	256	5	9606
AYIAYELNSVQHR	0	1	Unmodified	1562.7841	0.78414057	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.44	0.497	5	4				19.153	19.153	2;3	6.8073E-100	5439	DP1061-11	214.71	214.71			0.9625	1.0052	4.1784	6	0	Median	380680000	191440000	189250000	244	287	227	478;479;480;481;482;483;484;485;486	1090;1091;1092;1093;1094;1095;1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107	1095		18	9606
AYNMVDIIHSVVDER	0	1	Oxidation (M)	1775.8512	0.85123386	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.25	0.433			3	1		18.52	18.52	2;3	9.3315E-07	9143	DP1061-13	98.676	74.742			1.0572	1.0789	NaN	1	0	Median	62883000	27232000	35650000	245	68	228	487;488;489;490	1108;1109;1110;1111;1112;1113;1114;1115	1109	83	8	9606
AYNMVDIIHSVVDER	0	1	Unmodified	1759.8563	0.85631924	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.819	21.819	3	0.051762	13367	DP1061-13	34.382	34.382			0.98137	1.0059	NaN	1	0	Median	11719000	5787300	5932000	246	68	228	491	1116	1116		0	9606
AYSEALAAFGNGALFVEK	1	0	Unmodified	1856.9309	0.93086439	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		22.07	22.07	2;3	4.3655E-118	11266	DP1061-12	228.17	195.31			0.91901	0.9656	14.801	3	0	Plateau	233680000	113430000	120250000	247	89	229	492;493;494;495	1117;1118;1119;1120;1121;1122;1123;1124;1125;1126;1127;1128;1129;1130	1119		14	9606
AYVEANQMLGDLIK	1	0	Oxidation (M)	1579.7916	0.79159371	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			18.919	18.919	2	6.1781E-09	7707	DP1061-12	102.4	80.373			0.96058	0.9992	1.0818	2	0	Median	125730000	63856000	61869000	248	89	230	496;497	1131;1132;1133;1134;1135;1136;1137;1138;1139	1132	118	9	9606
AYVEANQMLGDLIK	1	0	Unmodified	1563.7967	0.79667909	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				21.072	21.072	2	0.00032221	10195	DP1061-12	107.09	64.846			NaN	NaN	NaN	0	0	Median	15889000	0	15889000	249	89	230	498	1140;1141	1141		2	9606
AYVWDNNK	1	0	Unmodified	1008.4665	0.46649483	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.917	15.917	2	0.008123	4585	DP1061-11	94.662	94.662			0.90597	0.96446	NaN	1	0	Median	16755000	8799900	7954900	250	287	231	499	1142;1143	1143		2	9606
AYVWDNNKDLAEWLEK	2	0	Unmodified	1992.9581	0.95814177	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1				21.302	21.302	3	0.00010902	10496	DP1061-12	83.966	64.804			0.88041	0.90061	NaN	1	0	Median	16606000	7404200	9202100	251	287	232	500	1144;1145	1145		2	9606
CADFGMAADK	1	0	Oxidation (M)	1100.4267	0.4266802	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		13.191	13.191	2	0.0098391	3310	DP1061-13	65.157	53.646			1.1119	1.1028	0.40756	2	0	Median	90761000	43763000	46998000	252	68	233	501;502	1146;1147;1148;1149;1150;1151	1148	84	6	9606
CADFGMAADKNKFPGDSVVTGR	2	1	Oxidation (M)	2358.0733	0.073264658	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	2	3	0			1			16.193	16.193	4	0.0017145	6558	DP1061-13	58.107	46.876			0.79686	0.80652	NaN	1	0	Median	23934000	13354000	10581000	253	68	234	503	1152;1153;1154	1152	84	3	9606
CAGCTNPISGLGGTK	1	0	Unmodified	1491.681	0.68099741	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				3		15.919	15.919	2	0.00065097	5899	DP1061-14	110.08	67.334			NaN	NaN	NaN	0	0	Median	1971400	1971400	0	254	307	235	504;505;506	1155;1156;1157;1158;1159	1159		5	9606
CAQAQTGIDLSGCTK	1	0	Unmodified	1608.7236	0.7235905	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				15.708	15.708	2	2.1414E-05	4809	DP1061-12	122.55	85.7			NaN	NaN	NaN	0	0	Median	0	0	0	255	364	236	507	1160	1160		1	9606
CASQAGMTAYGTR	0	1	Oxidation (M)	1388.5813	0.58128336	323	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	4	0				1		12.538	12.538	2	0.021247	2730	DP1061-14	88.681	11.302			NaN	NaN	NaN	0	0	Median	0	0	0	256	323	237	508	1161	1161	355	1	9606
CDSSPDSAEDVR	0	1	Unmodified	1336.5201	0.52012289	14	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	0	3	0			1			12.729	12.729	2	0.018158	2862	DP1061-13	80.916	43.441		+	NaN	NaN	NaN	0	0	Median	2559500	2559500	0	257	14	238	509	1162	1162		1	9606
CEGINISGNFYR	0	1	Unmodified	1428.6456	0.64559818	151	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	5	0					1	18.332	18.332	2	6.0056E-11	8458	DP1061-15	121.6	99.858			1.7873	1.6787	NaN	1	0	Median	6522200	1900400	4621800	258	151	239	510	1163;1164;1165;1166	1164		4	9606
CFIVGADNVGSK	1	0	Unmodified	1265.6074	0.60742176	71	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		16.642	16.642	2	0.0062993	6652	DP1061-14	87.789	60.047			NaN	NaN	NaN	0	0	Median	3261400	0	3261400	259	71	240	511	1167	1167		1	9606
CIAVEPGNQWFVTGSADR	0	1	Unmodified	2005.9316	0.93160944	39	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	3	0			1			20.17	20.17	2	2.808E-10	11258	DP1061-13	130.69	89.443			NaN	NaN	NaN	0	0	Median	0	0	0	260	39	241	512	1168	1168		1	9606
CIGKPGGSLDNSEQK	2	0	Unmodified	1588.7515	0.75151981	459	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	1	5	0					1	12.528	12.528	3	0.0013265	2866	DP1061-15	105.58	77.918			NaN	NaN	NaN	0	0	Median	8460300	0	8460300	261	459	242	513	1169;1170	1169		2	9606
CLAAEDVVFIGPDTHAIQAMGDK	1	0	Oxidation (M)	2473.1617	0.16174531	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.303	19.303	3	0.0048806	10134	DP1061-13	49.559	49.559			0.97089	0.99984	NaN	1	0	Median	18456000	11713000	6743400	262	67	243	514	1171;1172	1172	71	2	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	2	0	Oxidation (M)	2930.4154	0.41539382	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			2			18.836	18.836	3;4	3.2369E-29	9466	DP1061-13	133.48	112.4			0.96455	0.97351	2.1075	2	0	Median	144930000	72953000	71975000	263	67	244	515;516	1173;1174;1175;1176;1177;1178;1179;1180;1181;1182;1183;1184;1185	1181	71	13	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	2	0	Unmodified	2914.4205	0.4204792	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.422	20.422	4	0.046642	11646	DP1061-13	38.122	13.725			NaN	NaN	NaN	0	0	Median	8196100	0	8196100	264	67	244	517	1186	1186		1	9606
CNESLYGR	0	1	Unmodified	997.42873	0.42872911	303	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		13.477	13.477	2	0.00039565	3743	DP1061-14	111.82	81.147			0.98432	1.0057	NaN	1	0	Median	7948100	3993200	3954900	265	303	245	518	1187;1188	1188		2	9606
CPFTGNVSIR	0	1	Unmodified	1149.5601	0.56007764	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	16.331	16.331	2	0.00073915	6353	DP1061-15	99.136	61.002			1.4473	1.3594	NaN	1	0	Median	21185000	8667100	12517000	266	220	246	519	1189;1190;1191	1189		3	9606
CPSIAAAIAAVNALHGR	0	1	Unmodified	1690.8937	0.8937078	308	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	3	0			1			20.837	20.837	3	2.1277E-06	12142	DP1061-13	124.16	87.225			NaN	NaN	NaN	0	0	Median	3739500	0	3739500	267	308	247	520	1192	1192		1	9606
CQAAEPQIITGSHDTTIR	0	1	Unmodified	1996.9636	0.96363785	39	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	3	0			1			15.691	15.691	3	0.026571	5977	DP1061-13	67.274	22.884			NaN	NaN	NaN	0	0	Median	0	0	0	268	39	248	521	1193	1193		1	9606
CSLSLVGR	0	1	Unmodified	890.46439	0.46438634	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		15.88	15.88	2	0.050793	5931	DP1061-14	76.774	43.224			NaN	NaN	NaN	0	0	Median	4535500	4535500	0	269	307	249	522	1194	1194		1	9606
CVEVETDVVSNTSGSAR	0	1	Unmodified	1808.8211	0.82105594	315	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				1		15.693	15.693	2	4.2315E-49	5717	DP1061-14	220.69	149.75			NaN	NaN	NaN	0	0	Median	3296800	0	3296800	270	315	250	523	1195;1196	1195		2	9606
CVFALREENK	1	1	Unmodified	1264.6234	0.62340617	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					15.295	15.295	2;3	2.5271E-18	4163	DP1061-11	152.06	95.251			0.96695	1.0239	8.3381	2	0	Median	22812000	12217000	10595000	271	287	251	524;525	1197;1198;1199;1200;1201;1202	1199		6	9606
CVICGGPGVSDAYYCK	1	0	Unmodified	1804.7583	0.75826145	355	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	5	0					1	17.282	17.282	2	0.00067546	7379	DP1061-15	110.66	81.359			NaN	NaN	NaN	0	0	Median	2751200	0	2751200	272	355	252	526	1203;1204	1203		2	9606
CVIFEIPGAPDDEAVR	0	1	Unmodified	1786.856	0.85598488	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	3.5	0.5			1	1		21.021	21.021	2	2.0572E-17	12364	DP1061-13	172.92	126.13			NaN	NaN	NaN	0	0	Median	30411000	0	30411000	273	390	253	527;528	1205;1206;1207;1208;1209	1206		5	9606
DAEAWFNEK	1	0	Unmodified	1108.4825	0.48253882	15	CON__P13645;P13645;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8	KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	yes	no	0	0	0	3.25	1.48	1		1	1	1	18.567	18.567	2	7.0395E-09	7079	DP1061-11	178.3	120.07		+	NaN	NaN	NaN	0	0	Median	64672000	64672000	0	274	15	254	529;530;531;532	1210;1211;1212;1213;1214;1215;1216;1217	1211		8	9606
DAFLGSFLYEYSR	0	1	Unmodified	1566.7355	0.73545904	11	CON__P02769			yes	yes	0	0	0	3	0			1			23.71	23.71	2	0.033629	15573	DP1061-13	73.632	44.924		+	NaN	NaN	NaN	0	0	Median	2250600	2250600	0	275	11	255	533	1218;1219	1218		2	9606
DAGQISGLNVLR	0	1	Unmodified	1241.6728	0.67279921	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			18.91	18.91	2	0.0002746	9576	DP1061-13	90.149	27.073			2.2015	2.2536	NaN	1	0	Median	24346000	7341100	17005000	276	146	256	534	1220;1221;1222;1223;1224;1225	1220		6	9606
DAGTIAGLNVLR	0	1	Unmodified	1198.667	0.66698555	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.689	19.689	2	5.574E-11	10686	DP1061-13	122.13	75.977			5.1601	5.2658	NaN	1	0	Median	61333000	8771600	52561000	277	88	257	535	1226;1227;1228;1229	1228		4	9606
DAGVIAGLNVLR	0	1	Unmodified	1196.6877	0.68772099	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			20.579	20.579	2	8.3764E-07	11716	DP1061-13	103.55	84.94			5.7866	5.882	NaN	1	0	Median	200280000	31877000	168400000	278	85	258	536	1230;1231;1232;1233	1232		4	9606
DAHQSLLATR	0	1	Unmodified	1110.5782	0.57817054	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.471	1	2				14.142	14.142	2;3	3.7748E-14	3580	DP1061-12	143.24	90.659			NaN	NaN	NaN	0	0	Median	2847800	2847800	0	279	89	259	537;538;539	1234;1235;1236	1235		3	9606
DALSDLALHFLNK	1	0	Unmodified	1455.7722	0.7721789	184	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			23.345	23.345	2	1.1672E-13	15115	DP1061-13	180.09	131.03			NaN	NaN	NaN	0	0	Median	4537300	0	4537300	280	184	260	540	1237;1238	1238		2	9606
DANGNSFATR	0	1	Unmodified	1051.4683	0.46828574	227;113	P22090;P62701;Q8TD47	RPS4Y1;RPS4X;RPS4Y2	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	no	no	0	0	0	4	0				1		12.948	12.948	2	6.9838E-05	3191	DP1061-14	103.7	103.7			0.93784	0.95823	NaN	1	0	Median	10985000	5519000	5465500	281	113;227	261	541	1239;1240;1241;1242	1241		4	9606
DAVTYTEHAK	1	0	Unmodified	1133.5353	0.53530267	231	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					3	12.489	12.489	2	9.3992E-28	2783	DP1061-15	168.27	138.89			1.5476	1.3825	NaN	1	0	Median	173830000	68579000	105250000	282	231	262	542;543;544	1243;1244;1245;1246;1247;1248	1246		6	9606
DDDIAALVVDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1836.787	0.78697862	199	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	1	0	4	0				1		22.08	22.08	2	3.3534E-11	12301	DP1061-14	102.97	94.838			1.3633	1.3021	NaN	1	0	Median	4882800	2492700	2390100	283	199	263	545	1249;1250;1251;1252;1253;1254	1249	225	6	9606
DDEVQVVR	0	1	Unmodified	958.47197	0.47197413	203	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	14.125	14.125	2	0.037386	4352	DP1061-15	94.407	55.601			NaN	NaN	NaN	0	0	Median	0	0	0	284	203	264	546	1255	1255		1	9606
DDGLFSGDPNWFPK	1	0	Unmodified	1593.71	0.70997257	144	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	22.909	22.909	2	0.0063011	13317	DP1061-15	89.171	63.052			NaN	NaN	NaN	0	0	Median	5424200	0	5424200	285	144	265	547	1256;1257;1258	1258		3	9606
DEILPTTPISEQK	1	0	Unmodified	1469.7613	0.76133944	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		17.793	17.793	2	9.8993E-05	7822	DP1061-14	93.442	93.442			1.2421	1.1863	NaN	1	0	Median	6927700	2987000	3940800	286	117	266	548	1259;1260	1259		2	9606
DEPIHILNVAIK	1	0	Unmodified	1360.7715	0.77145062	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.57	0.495	3	4				19.395	19.395	2;3	1.0764000000000001E-41	7622	DP1061-11	163.88	107.62			0.82181	0.86348	16.961	5	0	Median	443420000	239520000	203900000	287	287	267	549;550;551;552;553;554;555	1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274	1261		13	9606
DFFNYLPLSSQDPAPVR	0	1	Unmodified	1964.9632	0.96322715	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.4	0.49			3	2		22.989	22.989	2;3	4.9786E-84	14634	DP1061-13	205.87	205.87			0.82452	0.84223	1.3201	4	0	Median	333520000	174100000	159420000	288	68	268	556;557;558;559;560	1275;1276;1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293	1277		19	9606
DFFNYLPLSSQDPAPVRECHDPSDR	0	2	Unmodified	2961.3352	0.33516966	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			20.265	20.265	3;4	0.00029243	11352	DP1061-13	71.592	58.344			0.99199	1.0121	27.854	2	0	Median	37407000	20162000	17246000	289	68	269	561;562	1294;1295;1296;1297;1298;1299	1296		6	9606
DFLAGGIAAAISK	1	0	Unmodified	1232.6765	0.6764876	94	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	4	0				1		21.276	21.276	2	0.0030846	11535	DP1061-14	75.788	44.294			1.5845	1.5134	NaN	1	0	Median	6452300	2983900	3468500	290	94	270	563	1300;1301	1300		2	9606
DFLAGGVAAAISK	1	0	Unmodified	1218.6608	0.66083754	66	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	2.5	1.5	1			1		20.173	20.173	2	0.0017124	10197	DP1061-14	81.92	53.223			1.1855	1.1954	15.283	2	0	Median	28578000	11097000	17481000	291	66	271	564;565	1302;1303;1304;1305	1304		4	9606
DFPYEEDSRPR	0	2	Unmodified	1409.6212	0.62115757	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	1	3	0			2			15.692	15.692	2;3	0.0068801	5964	DP1061-13	113.93	86.955			NaN	NaN	NaN	0	0	Median	17688000	0	17688000	292	390	272	566;567	1306;1307;1308;1309;1310	1306		5	9606
DFTATFGPLDSLNTR	0	1	Unmodified	1653.7999	0.79985021	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.85	1.35	1	7	1	1	3	25.195	25.195	2	1.0334999999999999E-91	13575	DP1061-13	221.6	192.06			0.83412	0.85167	9.3376	6	0	Median	501560000	266500000	235060000	293	89	273	568;569;570;571;572;573;574;575;576;577;578;579;580	1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324;1325;1326;1327;1328;1329;1330;1331;1332;1333;1334;1335;1336;1337;1338;1339;1340;1341;1342	1335		32	9606
DFTQVFDSYAQFEESMIAAK	1	0	Oxidation (M)	2342.0413	0.041279052	418	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	1	0	2	0		1				24.82	24.82	2	4.3558E-23	14580	DP1061-12	154.6	120.15			NaN	NaN	NaN	0	0	Median	1671300	0	1671300	294	418	274	581	1343;1344;1345	1344	433	3	9606
DFTVASPAEFVTR	0	1	Unmodified	1438.7092	0.70924429	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.4	1.2	2	5	1	1	1	23.394	23.394	2	6.7966E-42	11677	DP1061-13	169.65	119.36			0.86992	0.88889	10.928	7	0	Median	539320000	289400000	249920000	295	287;26	275	582;583;584;585;586;587;588;589;590;591	1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359;1360;1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374	1369		29	9606
DGQCTLVSSLDSTLR	0	1	Unmodified	1650.7883	0.78829925	402	Q9BRX9	WDR83	WD repeat domain-containing protein 83	yes	yes	0	0	0	4	0				2		20.326	20.326	2	0.030225	10507	DP1061-14	74.698	44.134			NaN	NaN	NaN	0	0	Median	0	0	0	296	402	276	592;593	1375;1376	1375		2	9606
DIDAFWLQR	0	1	Unmodified	1162.5771	0.57710791	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					22.29	22.29	2	0.034036	10718	DP1061-11	81.191	33.588			NaN	NaN	NaN	0	0	Median	1844100	0	1844100	297	48	277	594	1377	1377		1	9606
DIDEVSSLLR	0	1	Unmodified	1145.5928	0.59281755	183	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			20.306	20.306	2	0.013322	11302	DP1061-13	107.57	56.871			NaN	NaN	NaN	0	0	Median	6283200	0	6283200	298	183	278	595	1378	1378		1	9606
DIDIHEVR	0	1	Unmodified	995.50361	0.50360861	266	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				14.86	14.86	2	0.018585	4167	DP1061-12	85.212	61.443			3.1828	3.45	NaN	1	0	Median	8456600	3058000	5398600	299	266	279	596	1379;1380	1379		2	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	1	0	Unmodified	3263.5066	0.5065879	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0.816	1	1	1			21.796	21.796	3	2.3318E-22	13136	DP1061-13	143.89	116.46		+	NaN	NaN	NaN	0	0	Median	22569000	22569000	0	300	16	280	597;598;599	1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392	1390		12	9606
DIGEGNLSTAAAAALAAAAVK	1	0	Unmodified	1883.9953	0.99525556	371	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	2	0		2				22.677	22.677	2	4.7399E-11	12122	DP1061-12	138.73	106.4			NaN	NaN	NaN	0	0	Median	4197100	0	4197100	301	371	281	600;601	1393;1394	1393		2	9606
DIICQIAYAR	0	1	Unmodified	1221.6176	0.61759251	163	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		19.182	19.182	2	0.00028588	9265	DP1061-14	101.28	63.198			2.0273	2.0714	NaN	1	0	Median	6525200	2464400	4060800	302	163	282	602	1395;1396;1397	1395		3	9606
DIIVIGNDITYR	0	1	Unmodified	1390.7456	0.7456298	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.14	0.639	1	11	1	1		21.907	21.907	2	1.6991E-23	9646	DP1061-12	152.69	130.7			0.98724	1.0873	13.351	6	0	Linear	250530000	123610000	126920000	303	287	283	603;604;605;606;607;608;609;610;611;612;613;614;615;616	1398;1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415	1401		15	9606
DINLQDEDWNEFNDINK	1	0	Unmodified	2120.9287	0.92869214	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					21.674	21.674	2	0.0072556	10218	DP1061-11	88.092	59.809			NaN	NaN	NaN	0	0	Median	0	0	0	304	347	284	617	1416	1416		1	9606
DIPSLPPLPPLPPLPPLDR	0	1	Unmodified	2043.1768	0.17684874	174	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	2	0		1				25.369	25.369	2	6.0822E-10	15150	DP1061-12	130.61	86.049			NaN	NaN	NaN	0	0	Median	2327200	0	2327200	305	174	285	618	1417;1418;1419	1419		3	9606
DISEASVFDAYVLPK	1	0	Unmodified	1652.8298	0.82975336	236	P62854	RPS26	40S ribosomal protein S26	yes	yes	0	0	0	5	0					1	22.547	22.547	2	8.8656E-61	12907	DP1061-15	185.99	146.12			1.0485	0.93668	NaN	1	0	Median	12433000	5629600	6803600	306	236	286	619	1420;1421;1422;1423;1424	1423		5	9606
DIVEASSQK	1	0	Unmodified	975.48729	0.48728985	365	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				12.604	12.604	2	0.041331	2482	DP1061-12	76.679	39.121			NaN	NaN	NaN	0	0	Median	5090300	0	5090300	307	365	287	620	1425	1425		1	9606
DKFEEDRIYR	1	2	Unmodified	1369.6626	0.66262845	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	2					14.521	14.521	2;3	0.0050152	3565	DP1061-11	92.239	92.239			0.9554	0.97415	20.04	2	0	Median	94282000	48909000	45373000	308	287	288	621;622	1426;1427	1426		2	9606
DKLESEMEDAYHEHQANLLR	1	1	Oxidation (M)	2443.1074	0.10740156	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	1	2	0		1				15.62	15.62	4	7.3105E-05	4741	DP1061-12	110.77	88.528			NaN	NaN	NaN	0	0	Median	13801000	0	13801000	309	116	289	623	1428;1429;1430	1429	154	3	9606
DLAEWLEK	1	0	Unmodified	1002.5022	0.50221163	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.17	21.17	2	0.026551	9742	DP1061-11	79.713	16.406			0.86389	0.91966	NaN	1	0	Median	8937700	5039400	3898400	310	287	290	624	1431;1432	1431		2	9606
DLAILQCHGELDPMVPVR	0	1	Oxidation (M)	2078.0289	0.028880648	55	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	1	0	5	0					2	19.574	19.574	2;3	3.1172E-05	9740	DP1061-15	113.29	72.773			NaN	NaN	NaN	0	0	Median	8215700	0	8215700	311	55	291	625;626	1433;1434;1435;1436	1433	66	4	9606
DLEEFFSTVGK	1	0	Unmodified	1270.6081	0.60813326	308	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	3	0			1			22.531	22.531	2	3.4748E-13	14205	DP1061-13	136.57	100.01			1.6731	1.723	NaN	1	0	Median	7263700	2583400	4680300	312	308	292	627	1437;1438	1438		2	9606
DLEKPFLLPVEAVYSVPGR	1	1	Unmodified	2128.1568	0.15684158	173	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	3	0			1			22.377	22.377	3	0.00049988	14030	DP1061-13	70.555	56.932			1.1625	1.1917	NaN	1	0	Median	6080100	2844400	3235600	313	173	293	628	1439	1439		1	9606
DLFGKFGPALSVK	2	0	Unmodified	1377.7656	0.76563696	91	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	3	0			1			23.676	23.676	2	0.027444	15518	DP1061-13	55.721	27.64			1.1506	1.1613	NaN	1	0	Median	4969600	2514700	2455000	314	91	294	629	1440	1440		0	9606
DLHDANTDLIGR	0	1	Unmodified	1338.6528	0.65279205	195	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	1	0	1					16.069	16.069	2	0.00032048	4685	DP1061-11	107.79	69.038			NaN	NaN	NaN	0	0	Median	1331100	0	1331100	315	195	295	630	1441	1441		1	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	1	0	2 Oxidation (M)	4299.6572	0.65716542	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	2	0	4	0				1		16.278	16.278	3	2.2981E-13	6367	DP1061-14	109.09	104.98			NaN	NaN	NaN	0	0	Median	6387200	0	6387200	316	155	296	631	1442;1443;1444;1445;1446;1447	1445	185;186	6	9606
DLLNLSR	0	1	Unmodified	829.46577	0.46576654	414	Q9H939	PSTPIP2	Proline-serine-threonine phosphatase-interacting protein 2	yes	yes	0	0	0	2.67	1.25	1		1	1		13.325	13.325	2	8.7963E-06	3290	DP1061-13	119.57	10.583			1.1072	1.1262	4.9348	2	0	Median	662040000	310770000	351270000	317	414	297	632;633;634	1448;1449;1450	1449		3	9606
DLPLLLFR	0	1	Unmodified	985.59605	0.59605244	35	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			23.626	23.626	2	0.018371	15487	DP1061-13	85.359	59.909			0.86	0.88165	NaN	1	0	Median	12025000	6101800	5923300	318	35	298	635	1451	1451		1	9606
DLSAAGIGLLAAATQSLSMPASLGR	0	1	Oxidation (M)	2386.2526	0.25260923	160	P43243	MATR3	Matrin-3	yes	yes	0	1	0	2	0		2				25.748	25.748	2;3	1.9364999999999998E-50	15502	DP1061-12	163.44	163.44			2.4157	2.6186	18.795	2	0	Median	6997000	2242200	4754800	319	160	299	636;637	1452;1453;1454;1455;1456;1457;1458;1459	1453	189	8	9606
DLTDYLMK	1	0	Oxidation (M)	1013.4739	0.47394797	199;249;228	P60709;Q562R1;P63267;P68133;P68032;P62736;P63261	ACTB;ACTBL2;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		18.818	18.818	2	0.044599	8873	DP1061-14	57.281	57.281			1.5309	1.4622	NaN	1	0	Median	8339000	2493000	5846000	320	199;228;249	300	638	1460;1461	1460		2	9606
DLTTAGAVTQCYR	0	1	Unmodified	1454.6824	0.68237762	271	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					2	16.804	16.804	2	0.00086942	6936	DP1061-15	120.63	83.122			NaN	NaN	NaN	0	0	Median	4519300	0	4519300	321	271	301	639;640	1462;1463	1463		2	9606
DLYANTVLSGGTTMYPGIADR	0	1	Oxidation (M)	2230.0576	0.057597819	199;249	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		20.639	20.639	2	1.4775E-61	10853	DP1061-14	176.25	176.25			1.2317	1.2585	NaN	1	0	Median	10109000	4284900	5823800	322	199;249	302	641	1464;1465;1466;1467	1467	226	4	9606
DMAEMQRVWKEK	2	1	Oxidation (M)	1565.733	0.73303298	317	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	1	2	2.67	1.25	1		1	1		17.501	17.501	2	0.002602	5989	DP1061-11	95.775	22.895			NaN	NaN	NaN	0	0	Median	232640000	232640000	0	323	317	303	642;643;644	1468;1469;1470;1471	1468	336	4	9606
DMAGLLKPTACTMLVSSLR	1	1	2 Oxidation (M)	2095.0476	0.047567179	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2	0		2				19.208	19.208	3	3.4652E-08	7714	DP1061-12	96.561	66.025			0.88972	0.93122	3.3898	2	0	Median	62316000	30518000	31798000	324	89	304	645;646	1472;1473;1474;1475;1476;1477	1472	119;120	6	9606
DMAGLLKPTACTMLVSSLR	1	1	Oxidation (M)	2079.0527	0.052652557	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		2				20.158	20.158	3	0.00067331	9108	DP1061-12	100.97	61.729			NaN	NaN	NaN	0	0	Median	19615000	0	19615000	325	89	304	647;648	1478;1479	1478	119;120	2	9606
DMIILPEMVGSMVGVYNGK	1	0	3 Oxidation (M)	2099.9941	0.99413463	233	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	3	0	5	0					1	19.881	19.881	2	0.047124	10198	DP1061-15	47.666	17.559			NaN	NaN	NaN	0	0	Median	0	0	0	326	233	305	649	1480	1480		1	9606
DMPIQAFLLYQEPVLGPVR	0	1	Oxidation (M)	2201.1555	0.15546137	9	CON__P02666			yes	yes	0	1	0	3.71	1.03		1	2	2	2	24.123	24.123	2;3	5.946E-38	13604	DP1061-14	199.38	146.89		+	NaN	NaN	NaN	0	0	Median	67654000	67654000	0	327	9	306	650;651;652;653;654;655;656	1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500	1490	4	20	
DMPIQAFLLYQEPVLGPVR	0	1	Unmodified	2185.1605	0.16054675	9	CON__P02666			yes	yes	0	0	0	2	0		1				25.343	25.343	2	3.4455E-10	15137	DP1061-12	135.02	99.025		+	NaN	NaN	NaN	0	0	Median	1471400	1471400	0	328	9	306	657	1501;1502;1503;1504	1502		4	
DMTLEGDDLILEIE	0	0	Oxidation (M)	1620.744	0.7440344	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	4.5	0.5				1	1	25.256	25.256	2	1.4277E-06	14609	DP1061-14	125.56	90.067			NaN	NaN	NaN	0	0	Median	0	0	0	329	89	307	658;659	1505;1506;1507;1508	1506	121	4	9606
DMYDQVLK	1	0	Oxidation (M)	1026.4692	0.46919694	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1.5	0.5	1	1				16.04	16.04	2	0.01199	4623	DP1061-11	75.738	42.898			0.89037	0.94166	4.4519	2	0	Median	65389000	32929000	32460000	330	287;26	308	660;661	1509;1510	1509	17	2	9606
DNIQGITKPAIR	1	1	Unmodified	1324.7463	0.7462985	231	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					2	14.986	14.986	2;3	2.7247E-22	5113	DP1061-15	134.84	97.336			1.248	1.1986	14.579	2	0	Median	107760000	43311000	64449000	331	231	309	662;663	1511;1512;1513;1514;1515;1516;1517;1518	1518		8	9606
DNLEFFLAGIGR	0	1	Unmodified	1350.6932	0.6932003	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1				23.832	23.832	2	0.0059597	13466	DP1061-12	96.342	53.034			NaN	NaN	NaN	0	0	Median	0	0	0	332	171	310	664	1519	1519		1	9606
DNNLLGR	0	1	Unmodified	800.41407	0.41406533	85;101	P0DMV9;P0DMV8;P17066	HSPA1B;HSPA1A;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6	no	no	0	0	0	3	0			1			14.709	14.709	2	0.034932	4902	DP1061-13	89.369	42.999			NaN	NaN	NaN	0	0	Median	59481000	0	59481000	333	85;101	311	665	1520;1521	1521		2	9606
DNQNFCVPCYEK	1	0	Unmodified	1572.6337	0.63371286	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		17.417	17.417	2	0.00025734	7412	DP1061-14	90.913	81.591			0.87491	0.83564	NaN	1	0	Median	6103000	3431600	2671400	334	307	312	666	1522;1523;1524	1522		3	9606
DNTCVVEFQFMLPTSHPNR	0	1	Oxidation (M)	2307.0412	0.041236248	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.67	0.471	1	2				20.298	20.298	2;3	1.4385E-08	9250	DP1061-12	100.45	69.335			0.82293	0.88554	12.903	2	0	Median	42911000	26516000	16395000	335	287	313	667;668;669	1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536	1530	275	12	9606
DPQQPAQQQQPAQQPK	1	0	Unmodified	1815.8864	0.88637381	50	O75909	CCNK	Cyclin-K	yes	yes	0	0	0	3	0			1			12.55	12.55	2	0.0012429	2684	DP1061-13	103.34	55.297			NaN	NaN	NaN	0	0	Median	0	0	0	336	50	314	670	1537	1537		1	9606
DPSLPLLELQDIMTSVSGR	0	1	Oxidation (M)	2086.0616	0.061620564	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.8	0.748	2	2	1			23.995	23.995	2;3	6.4464E-34	13429	DP1061-12	149.32	149.32			0.73316	0.85629	12.037	4	0	Linear	65573000	36450000	29123000	337	287	315	671;672;673;674;675	1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548;1549;1550;1551;1552;1553;1554;1555;1556	1546	276	19	9606
DPSLPLLELQDIMTSVSGR	0	1	Unmodified	2070.0667	0.066705942	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.6	0.49	2	3				26.968	26.968	2	1.9361E-17	16449	DP1061-12	154.65	95.082			NaN	NaN	NaN	0	0	Median	0	0	0	338	287	315	676;677;678;679;680	1557;1558;1559;1560;1561	1560		5	9606
DQLQTFSEEHPVLLTEAPLNPR	0	1	Unmodified	2533.2813	0.28126682	201	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	4	0				1		20.499	20.499	3	0.034156	10717	DP1061-14	60.561	28.077			NaN	NaN	NaN	0	0	Median	2167500	0	2167500	339	201	316	681	1562	1562		1	9606
DQSAVVVQGLPEGVAFK	1	0	Unmodified	1742.9203	0.9202997	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.449	20.449	2	0.0030663	9486	DP1061-12	100.22	63.079			NaN	NaN	NaN	0	0	Median	5357300	0	5357300	340	258	317	682	1563;1564	1564		2	9606
DREEDEEDAYER	0	2	Unmodified	1554.607	0.60702365	175	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	1	2.5	0.5		1	1			13.621	13.621	2	0.0017136	3156	DP1061-12	107.03	76.339			NaN	NaN	NaN	0	0	Median	1683100	0	1683100	341	175	318	683;684	1565;1566	1565		2	9606
DREEDEEDAYERR	0	3	Unmodified	1710.7081	0.70813467	175	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	2	2	0		1				13.208	13.208	3	0.046021	2816	DP1061-12	58.487	40.122			NaN	NaN	NaN	0	0	Median	3286900	0	3286900	342	175	319	685	1567	1567		1	9606
DSAQTSVTQAQR	0	1	Unmodified	1290.6164	0.61640654	313	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.511	12.511	2	2.0054E-06	2031	DP1061-11	152.97	62.316			NaN	NaN	NaN	0	0	Median	2038900	0	2038900	343	313	320	686	1568;1569	1568		2	9606
DSYVGDEAQSK	1	0	Unmodified	1197.515	0.51496116	199;249;228	P60709;P63267;P68133;P68032;P62736;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		13.134	13.134	2	0.0020201	3422	DP1061-14	86.882	75.034			1.3905	1.3281	NaN	1	0	Median	7126100	2907800	4218300	344	199;228;249	321	687	1570;1571	1571		2	9606
DTAASGYGTQNIR	0	1	Unmodified	1352.6321	0.6320566	447	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		14.622	14.622	2	0.0036426	4879	DP1061-14	100.88	52.455			NaN	NaN	NaN	0	0	Median	0	0	0	345	447	322	688	1572	1572		1	9606
DTEMLATGAQDGK	1	0	Oxidation (M)	1351.5926	0.59255956	334	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	1	0	3	0			1			13.511	13.511	2	2.9701E-05	3664	DP1061-13	138.99	119			NaN	NaN	NaN	0	0	Median	5282000	0	5282000	346	334	323	689	1573;1574;1575;1576	1574	363	4	9606
DTLYEAVR	0	1	Unmodified	965.48181	0.48181054	240	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	16.145	16.145	2	0.045775	6180	DP1061-15	72.138	20.351			1.8388	1.7271	NaN	1	0	Median	17790000	7328300	10462000	347	240	324	690	1577	1577		1	9606
DTPGHGSGWAETPR	0	1	Unmodified	1466.6539	0.65385468	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2.33	0.471		2	1			14.369	14.369	2;3	6.3522E-07	3731	DP1061-12	123.95	106.92			NaN	NaN	NaN	0	0	Median	91145000	0	91145000	348	46	325	691;692;693	1578;1579;1580;1581;1582;1583	1578		6	9606
DTPTSAGPNSFNK	1	0	Unmodified	1334.6103	0.61025853	372	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	5	0					1	14.154	14.154	2	0.0047932	4318	DP1061-15	90.149	61.422			NaN	NaN	NaN	0	0	Median	7647200	0	7647200	349	372	326	694	1584	1584		1	9606
DTQAMKEMHFHPK	2	0	2 Oxidation (M)	1630.7232	0.72319657	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2.5	0.5		1	1			12.403	12.403	3	6.1055E-06	2081	DP1061-12	98.368	98.368			0.71237	0.72383	9.0747	2	0	Median	202260000	110250000	92018000	350	89	327	695;696	1585;1586;1587;1588;1589;1590;1591;1592;1593	1586	122;123	9	9606
DTSYLFITGPDVVK	1	0	Unmodified	1553.7977	0.79772495	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.512	21.512	2	1.9228999999999999E-60	12878	DP1061-13	183.85	158.23			1.0227	1.0143	5.4006	2	0	Median	402260000	196010000	206250000	351	68	328	697;698	1594;1595;1596;1597;1598;1599;1600;1601;1602;1603	1596		10	9606
DVDDGLQAAEEVGYPVMIK	1	0	Oxidation (M)	2063.9721	0.97213685	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.43	1.18	2	2	1	2		21.009	21.009	2;3	1.0646000000000001E-24	9351	DP1061-11	132.24	132.24			0.6761	0.7079	6.0422	4	0	Median	143890000	85028000	58863000	352	287	329	699;700;701;702;703;704;705	1604;1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619;1620;1621;1622;1623	1604	277	20	9606
DVDDGLQAAEEVGYPVMIK	1	0	Unmodified	2047.9772	0.97722223	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.25	0.433	3	1				22.016	22.016	2;3	4.6626E-56	11283	DP1061-12	172.58	172.58			0.92954	0.98955	7.0419	3	0	Median	42026000	20133000	21893000	353	287	329	706;707;708;709	1624;1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635	1635		12	9606
DVDEGLEAAER	0	1	Unmodified	1202.5415	0.54151026	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.008	16.008	2	0.00065126	4656	DP1061-11	95.775	73.035			0.7107	0.77558	NaN	1	0	Median	4831700	2814200	2017500	354	26	330	710	1636;1637;1638	1637		3	9606
DVDGAYMTK	1	0	Oxidation (M)	1014.4328	0.43281144	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	5	0					1	12.79	12.79	2	0.05086	3123	DP1061-15	89.355	45.547		+	NaN	NaN	NaN	0	0	Median	22044000	22044000	0	355	60	331	711	1639	1639		1	9606
DVLSVAFSSDNR	0	1	Unmodified	1308.631	0.63099397	248	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				3		19.558	19.558	2	0.0002629	9699	DP1061-14	115.23	77.683			NaN	NaN	NaN	0	0	Median	1876500	1876500	0	356	248	332	712;713;714	1640;1641;1642	1640		3	9606
DVNAAIATIK	1	0	Unmodified	1014.571	0.5709599	252;400	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		17.006	17.006	2	0.00055319	7328	DP1061-13	100.02	59.293			1.3405	1.3295	13.403	2	0	Median	111450000	45668000	65787000	357	252;400	333	715;716	1643;1644;1645;1646;1647;1648;1649	1643		7	9606
DVNLASCAADGSVK	1	0	Unmodified	1405.6507	0.65074314	34	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			16.049	16.049	2	0.018459	6343	DP1061-13	79.466	45.38			NaN	NaN	NaN	0	0	Median	0	0	0	358	34	334	717	1650	1650		1	9606
DVNQQEFVR	0	1	Unmodified	1133.5465	0.54653606	148	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	15.453	15.453	2	0.016902	5550	DP1061-15	119.41	57.444			NaN	NaN	NaN	0	0	Median	5925200	0	5925200	359	148	335	718	1651;1652;1653	1652		3	9606
DVQIGDIVTVGECRPLSK	1	1	Unmodified	1985.0252	0.025175478	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					2	19.083	19.083	2;3	4.8484E-32	9303	DP1061-15	148.18	125.06			1.5769	1.5145	1.1758	2	0	Median	34086000	14722000	19365000	360	220	336	719;720	1654;1655;1656;1657;1658;1659;1660;1661;1662	1655		9	9606
DVVGNDVATILSR	0	1	Unmodified	1357.7201	0.72014333	462	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	yes	yes	0	0	0	3	0			1			20.779	20.779	2	0.0015838	12140	DP1061-13	82.494	46.551			1.1283	1.1518	NaN	1	0	Median	6872200	2823200	4049100	361	462	337	721	1663	1663		1	9606
DWVLNEFK	1	0	Unmodified	1049.5182	0.51819605	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.99	20.99	2	0.05221	12259	DP1061-13	75.738	23.335			NaN	NaN	NaN	0	0	Median	5578100	0	5578100	362	102	338	722	1664	1664		1	9606
DYDDMSPR	0	1	Oxidation (M)	1013.376	0.37602484	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	3	0			1			12.696	12.696	2	0.0072435	2865	DP1061-13	84.568	74.581			12.902	13.228	NaN	1	0	Median	12224000	1238800	10985000	363	209	339	723	1665;1666	1665	231	2	9606
DYFEQYGK	1	0	Unmodified	1048.4502	0.45017606	82	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		17.245	17.245	2	0.044609	7284	DP1061-14	81.297	62.514			NaN	NaN	NaN	0	0	Median	7504700	0	7504700	364	82	340	724	1667;1668	1668		2	9606
DYIVVGSDSGR	0	1	Unmodified	1166.5568	0.5567664	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					16.419	16.419	2	0.0049427	4988	DP1061-11	117.7	117.7			NaN	NaN	NaN	0	0	Median	9561300	0	9561300	365	321	341	725	1669;1670	1670		2	9606
DYIYAVTPLLEDALMDR	0	1	Oxidation (M)	2012.9765	0.97649395	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	0	2	0		1				24.845	24.845	2	0.0018851	14576	DP1061-12	109.6	83.068			NaN	NaN	NaN	0	0	Median	5152800	0	5152800	366	46	342	726	1671;1672	1672	47	2	9606
DYIYAVTPLLEDALMDR	0	1	Unmodified	1996.9816	0.98157933	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				25.498	25.498	2	0.0048552	15333	DP1061-12	98.531	68.842			NaN	NaN	NaN	0	0	Median	540150	0	540150	367	46	342	727	1673	1673		1	9606
DYLHLPPEIVPATLR	0	1	Unmodified	1732.9512	0.9512059	168	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					1	21.032	21.032	3	3.5212E-06	11410	DP1061-15	91.207	61.474			1.7423	1.6365	NaN	1	0	Median	5809800	1763100	4046700	368	168	343	728	1674;1675;1676	1674		3	9606
DYQELMNTK	1	0	Unmodified	1140.5121	0.51212439	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	1	0	1					16.865	16.865	2	0.01698	5362	DP1061-11	119.21	76.924		+	NaN	NaN	NaN	0	0	Median	4479600	4479600	0	369	60	344	729	1677;1678	1677		2	9606
DYQELMNVK	1	0	Oxidation (M)	1154.5278	0.52777445	17	CON__P35908v2;P35908;CON__P35908;Q5XKE5;CON__Q5XKE5;Q01546;CON__P12035;CON__Q01546;P12035	KRT2;KRT79;KRT76;KRT3	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 3	yes	no	0	1	0	5	0					1	15.558	15.558	2	0.045503	5589	DP1061-15	96.492	71.569		+	NaN	NaN	NaN	0	0	Median	11214000	11214000	0	370	17	345	730	1679;1680	1679		2	9606
EAAGTTAAAGTGGATEQPPR	0	1	Unmodified	1812.8602	0.86021864	37	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				13.427	13.427	2	8.4193E-05	3047	DP1061-12	113.37	69.051			NaN	NaN	NaN	0	0	Median	2074400	0	2074400	371	37	346	731	1681;1682	1682		2	9606
EAAPDAGAEPITADSDPAYSSK	1	0	Unmodified	2161.9651	0.96513722	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				16.373	16.373	2	7.996000000000001E-27	5404	DP1061-12	168.45	124.95			NaN	NaN	NaN	0	0	Median	0	0	0	372	364	347	732	1683	1683		1	9606
EAEQMGNELER	0	1	Oxidation (M)	1320.5616	0.56159378	313	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	0	1	0	1					12.874	12.874	2	0.0095978	2342	DP1061-11	105.4	83.31			NaN	NaN	NaN	0	0	Median	813550	0	813550	373	313	348	733	1684	1684	335	1	9606
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	1	0	Unmodified	3310.5268	0.52681154	335	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	0	3	0			1			20.979	20.979	3	0.013236	12355	DP1061-13	48.655	0			NaN	NaN	NaN	0	0	Median	6823500	0	6823500	374	335	349	734	1685	1685		1	9606
EAGGNMSIQFLGTVYK	1	0	Oxidation (M)	1729.8345	0.83452116	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	4	0.707			1	2	1	19.449	19.449	2	9.0423E-50	10315	DP1061-13	177.1	177.1			1.1285	1.0844	8.4467	3	0	Median	204130000	97971000	106150000	375	67	350	735;736;737;738	1686;1687;1688;1689;1690;1691;1692;1693;1694	1689	72	8	9606
EAIEGTYIDKK	2	0	Unmodified	1265.6503	0.65033243	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	13.876	13.876	2	0.0077933	4176	DP1061-15	122.96	69.187			NaN	NaN	NaN	0	0	Median	13999000	0	13999000	376	220	351	739	1695;1696	1696		2	9606
EALENANTNTEVLK	1	0	Unmodified	1544.7682	0.76821573	410	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	4	0				1		15.532	15.532	2	0.0057122	5618	DP1061-14	89.9	26.684			NaN	NaN	NaN	0	0	Median	0	0	0	377	410	352	740	1697	1697		1	9606
EALLSSAVDHGSDEVK	1	0	Unmodified	1655.8002	0.80024414	259	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			15.956	15.956	2	0.011368	6242	DP1061-13	85.672	37.828			NaN	NaN	NaN	0	0	Median	0	0	0	378	259	353	741	1698	1698		1	9606
EAMEHPYFYTVVK	1	0	Oxidation (M)	1628.7545	0.75447993	254	Q8NEV1;P68400	CSNK2A3;CSNK2A1	Casein kinase II subunit alpha 3;Casein kinase II subunit alpha	yes	no	0	1	0	4	0				1		16.943	16.943	3	0.052216	6990	DP1061-14	46.378	22.444			NaN	NaN	NaN	0	0	Median	2183000	0	2183000	379	254	354	742	1699	1699		1	9606
EANHNVSAPYGR	0	1	Unmodified	1313.6113	0.61126158	353	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	yes	no	0	0	0	2	0		1				12.474	12.474	3	0.046205	2250	DP1061-12	42.095	24.929			1.0482	1.1363	NaN	1	0	Median	9317800	4464400	4853400	380	353	355	743	1700;1701	1701		2	9606
EANNFLWPFK	1	0	Unmodified	1264.6241	0.6240581	104	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		22.264	22.264	2	0.005779	12528	DP1061-14	81.296	61.51			1.581	1.5101	NaN	1	0	Median	4630300	2165200	2465000	381	104	356	744	1702;1703	1703		2	9606
EAPPMEKPEVVK	2	0	Oxidation (M)	1368.6959	0.69590241	233	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	5	0					1	12.522	12.522	3	4.6579E-05	2811	DP1061-15	90.913	57.043			0.76105	0.78043	NaN	1	0	Median	7001200	3721700	3279500	382	233	357	745	1704;1705	1704	247	2	9606
EASFEYLQNEGER	0	1	Unmodified	1570.69	0.68996541	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.29	0.589	11	2	1			23.224	23.224	2;3	8.6616E-100	11208	DP1061-11	232.88	210.3			0.89147	0.96693	13.507	8	0	Median	50872000	24042000	26830000	383	287;26	358	746;747;748;749;750;751;752;753;754;755;756;757;758;759	1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733	1707		28	9606
EAVVNTQELLDLLVK	1	0	Unmodified	1682.9455	0.94545182	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	2	0		1				24.246	24.246	2	0.0015172	13947	DP1061-12	101.72	62.969			NaN	NaN	NaN	0	0	Median	1526300	0	1526300	384	347	359	760	1734;1735	1734		2	9606
EAYPGDVFYLHSR	0	1	Unmodified	1552.731	0.73104237	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.206	18.206	3	0.011725	8769	DP1061-13	65.809	33.185			NaN	NaN	NaN	0	0	Median	9956000	9956000	0	385	122	360	761	1736	1736		1	9606
ECCQPVLVYIPPQAELR	0	1	Unmodified	2071.0231	0.023066988	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.17	1.07	2	2	1	1		20.888	20.888	2;3	4.2721E-43	9311	DP1061-11	185.95	185.95			0.75015	0.76364	7.2731	4	0	Median	178080000	114190000	63884000	386	287	361	762;763;764;765;766;767	1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756	1737		20	9606
ECFVCTACR	0	1	Unmodified	1201.4678	0.46783351	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		14.93	14.93	2	0.00063469	5147	DP1061-14	103.83	74.684			1.045	1.0677	NaN	1	0	Median	5483400	2549100	2934300	387	307	362	768	1757	1757		1	9606
ECLVCTGCQTPLAGQQFTSR	0	1	Unmodified	2312.0348	0.034770661	303	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		18.377	18.377	2	0.0012257	8466	DP1061-14	95.651	75.221			NaN	NaN	NaN	0	0	Median	0	0	0	388	303	363	769	1758	1758		1	9606
ECPSDECGAGVFMASHFDR	0	1	Oxidation (M)	2186.8456	0.84557291	244	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	1	0	5	0					1	16.947	16.947	3	0.015097	7016	DP1061-15	68.625	56.659			NaN	NaN	NaN	0	0	Median	4396600	0	4396600	389	244	364	770	1759;1760	1759	252	2	9606
EDGLAQQQTQLNLR	0	1	Unmodified	1612.8169	0.81689726	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.942	16.942	2	2.4353E-06	5448	DP1061-11	120.09	74.929			NaN	NaN	NaN	0	0	Median	1705900	0	1705900	390	171	365	771	1761;1762;1763	1762		3	9606
EDGNEEDKENQGDETQGQQPPQR	1	1	Unmodified	2627.0968	0.096773109	250	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	3	0			1			12.47	12.47	3	0.015494	2606	DP1061-13	76.533	63.511			NaN	NaN	NaN	0	0	Median	7327500	0	7327500	391	250	366	772	1764	1764		1	9606
EDQLLCTDCYSNEYSSK	1	0	Unmodified	2110.846	0.84595006	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		17.803	17.803	2	2.4291E-137	7849	DP1061-14	241.51	241.51			0.93785	0.89575	NaN	1	0	Median	4030300	2059500	1970800	392	307	367	773	1765;1766;1767;1768	1768		4	9606
EEAISNMVVALK	1	0	Oxidation (M)	1318.6803	0.68025235	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	2	0.816	1	1	1			16.834	16.834	2	1.5824E-11	5285	DP1061-11	123.75	71.8			0.95433	1.0159	15.031	3	0	Median	127160000	61893000	65265000	393	287;26	368	774;775;776	1769;1770;1771;1772;1773;1774;1775;1776;1777;1778	1770	18	10	9606
EEAISNMVVALK	1	0	Unmodified	1302.6853	0.68533773	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.5	0.5	1	1				19.304	19.304	2	8.8713E-32	7759	DP1061-11	164.68	130.76			0.90568	0.96415	NaN	1	0	Median	67331000	32670000	34661000	394	287;26	368	777;778	1779;1780;1781;1782;1783	1780		5	9606
EEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	249	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	4	0				1		24.051	24.051	2	0.023524	13702	DP1061-14	66.533	38.869			NaN	NaN	NaN	0	0	Median	0	0	0	395	249	369	779	1784	1784	253	1	9606
EEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term)	1876.8547	0.85466426	249	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	0	0	4	0				1		24.488	24.488	2	0.045888	14043	DP1061-14	63.76	33.825			NaN	NaN	NaN	0	0	Median	0	0	0	396	249	369	780	1785	1785		1	9606
EEEMGEEEEVER	0	1	Oxidation (M)	1509.5777	0.57769735	311	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	1	0	1					13.173	13.173	2	0.020306	2582	DP1061-11	99.973	71.277			NaN	NaN	NaN	0	0	Median	0	0	0	397	311	370	781	1786	1786	334	1	9606
EEFLIPIYHQVAVQFADLHDTPGR	0	1	Unmodified	2794.4079	0.40786432	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				22.401	22.401	4	5.6502E-13	11811	DP1061-12	132.65	105.24			NaN	NaN	NaN	0	0	Median	3363000	3363000	0	398	287	371	782	1787;1788;1789;1790	1788		4	9606
EEGIGPENLR	0	1	Unmodified	1112.5462	0.54620171	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				15.881	15.881	2	4.9552E-08	4410	DP1061-11	120.87	92.172			0.84717	0.8895	4.1668	2	0	Median	92638000	48222000	44417000	399	287	372	783;784	1791;1792;1793;1794;1795;1796	1792		6	9606
EENKSDMNTVLNYIFSHAQVTK	2	0	Oxidation (M)	2583.2275	0.22751669	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0		2				20.609	20.609	3;4	0.00062103	9616	DP1061-12	66.871	66.871			0.91535	0.93635	5.1303	2	0	Median	50594000	23155000	27439000	400	287	373	785;786	1797;1798;1799;1800;1801;1802;1803;1804;1805;1806;1807	1799	278	11	9606
EENKSDMNTVLNYIFSHAQVTK	2	0	Unmodified	2567.2326	0.23260207	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1				22.051	22.051	4	0.00099145	11361	DP1061-12	61.304	39.456			1.005	1.028	NaN	1	0	Median	11087000	4240700	6846600	401	287	373	787	1808;1809;1810	1808		3	9606
EEVDSYR	0	1	Unmodified	896.38758	0.3875758	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					12.696	12.696	2	0.00061075	2208	DP1061-11	110.34	94.183			0.95888	1.0506	NaN	1	0	Median	4070200	2060500	2009700	402	26	374	788	1811;1812	1811		2	9606
EFEEESKQPGVSEQQR	1	1	Unmodified	1905.8704	0.87044898	51	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	1	3	0			1			13.417	13.417	3	0.037665	3586	DP1061-13	81.327	45.601			NaN	NaN	NaN	0	0	Median	4923500	0	4923500	403	51	375	789	1813	1813		1	9606
EFFEIMPNYAK	1	0	Oxidation (M)	1403.6431	0.64313856	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.304	19.304	2	2.9396E-06	10051	DP1061-13	112.11	87.875			1.0245	1.055	NaN	1	0	Median	41119000	18132000	22987000	404	68	376	790	1814;1815	1814	85	2	9606
EFFEIMPNYAK	1	0	Unmodified	1387.6482	0.64822394	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.683	20.683	2	2.3787E-13	11884	DP1061-13	138.4	110.19			1.0707	1.1027	NaN	1	0	Median	22377000	11190000	11186000	405	68	376	791	1816;1817;1818;1819	1816		4	9606
EFGAGPLFNQILPLLMSPTLEDQER	0	1	Oxidation (M)	2830.4211	0.42113112	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	0	2	0		2				25.855	25.855	2;3	0.00011399	15580	DP1061-12	106.19	76.087			NaN	NaN	NaN	0	0	Median	9184500	0	9184500	406	46	377	792;793	1820;1821;1822;1823;1824;1825;1826	1825	48	7	9606
EFQSPDEEMKK	2	0	Oxidation (M)	1382.6024	0.60239596	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	1	2	0		1				12.438	12.438	2	0.0052273	2195	DP1061-12	83.998	17.7			NaN	NaN	NaN	0	0	Median	5891900	0	5891900	407	46	378	794	1827;1828	1827	49	2	9606
EFTQQNKATLVDHGIR	1	1	Unmodified	1855.9541	0.95405945	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.838	14.838	3	0.0030838	3874	DP1061-11	63.31	37.72			0.86747	0.91856	NaN	1	0	Median	2390800	1059600	1331200	408	287	379	795	1829;1830	1829		2	9606
EGLPLMVFANWR	0	1	Oxidation (M)	1447.7282	0.7282056	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.33	1.25	1	1		1		22.675	22.675	2	2.4503E-11	12012	DP1061-12	120.87	120.87			0.90783	0.98384	2.1602	3	0	Plateau	78818000	40014000	38805000	409	287	380	796;797;798	1831;1832;1833;1834;1835;1836;1837;1838;1839;1840	1838	279	10	9606
EGLPLMVFANWR	0	1	Unmodified	1431.7333	0.73329097	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				24.05	24.05	2	4.0579E-16	13589	DP1061-12	131.22	106.99			0.91895	0.99612	NaN	1	0	Median	27168000	14398000	12770000	410	287	380	799	1841;1842;1843;1844	1841		4	9606
EGPEGFAR	0	1	Unmodified	861.39808	0.39808091	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.632	1	3	1			14.776	14.776	2	5.7918E-10	4252	DP1061-12	133.81	44.139			0.82814	0.89769	3.9922	3	0	Plateau	458890000	254160000	204730000	411	89	381	800;801;802;803;804	1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862	1853		18	9606
EGPLCDELIR	0	1	Unmodified	1200.5809	0.58087266	316	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		2				18.154	18.154	2	0.02013	6945	DP1061-12	91.265	53.454			NaN	NaN	NaN	0	0	Median	4814000	0	4814000	412	316	382	805;806	1863;1864	1864		2	9606
EGPMFEAMIMNR	0	1	3 Oxidation (M)	1472.6098	0.6098063	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	3	0	2	0		1				16.534	16.534	2	0.00019973	5571	DP1061-12	103.88	79.789			NaN	NaN	NaN	0	0	Median	6242800	0	6242800	413	28	383	807	1865;1866	1866	25;26;27	2	9606
EGSIEIDIPVPK	1	0	Unmodified	1295.6973	0.69728262	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		21.294	21.294	2	9.6404E-05	10362	DP1061-13	98.04	98.04			0.7685	0.7914	NaN	1	0	Median	133690000	66271000	67423000	414	395	384	808;809;810	1867;1868;1869;1870;1871;1872;1873;1874	1867		8	9606
EGSLSPASVGSDTLSDLGISSLQDGLALHIR	0	1	Unmodified	3094.5782	0.57823671	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				23.101	23.101	3	3.2134000000000003E-41	12616	DP1061-12	149.04	149.04			0.68346	0.74085	NaN	1	0	Median	14193000	8409900	5782900	415	287	385	811	1875;1876;1877;1878;1879;1880;1881;1882;1883	1880		9	9606
EIAQDFK	1	0	Unmodified	849.42323	0.42323303	255	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	0	5	0					1	14.06	14.06	2	0.0072355	4356	DP1061-15	97.068	10.201			1.5229	1.3604	NaN	1	0	Median	111760000	44445000	67312000	416	255	386	812	1884;1885;1886	1886		3	9606
EIAQDFKTDLR	1	1	Unmodified	1334.683	0.68302954	255	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	5	0					2	15.961	15.961	2;3	4.8995E-06	5967	DP1061-15	107.03	66.872			1.4816	1.423	4.571	2	0	Median	57939000	23233000	34705000	417	255	387	813;814	1887;1888;1889;1890;1891	1887		5	9606
EIELTHR	0	1	Unmodified	896.47158	0.4715802	38	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	3	0			1			12.598	12.598	2	0.011301	2818	DP1061-13	107.43	42.626			NaN	NaN	NaN	0	0	Median	15571000	0	15571000	418	38	388	815	1892;1893	1893		2	9606
EIETYHNLLEGGQEDFESSGAGK	1	0	Unmodified	2509.1245	0.12449141	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	4	0				1		18.659	18.659	3	8.6173E-05	8810	DP1061-14	102.19	72.617		+	NaN	NaN	NaN	0	0	Median	6073300	6073300	0	419	16	389	816	1894;1895;1896	1895		3	9606
EIFLSQPILLELEAPLK	1	0	Unmodified	1952.1234	0.12341618	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	1.12		1	1	1	1	24.8	24.8	2	8.667E-18	16441	DP1061-13	159.5	121.5			NaN	NaN	NaN	0	0	Median	30400000	0	30400000	420	142;210;211	390	817;818;819;820	1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907	1899		11	9606
EIGVQNVK	1	0	Unmodified	885.49198	0.4919813	96	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		13.469	13.469	2	0.051804	3674	DP1061-14	76.035	23.249			NaN	NaN	NaN	0	0	Median	2856000	0	2856000	421	96	391	821	1908	1908		1	9606
EIGYPVMIK	1	0	Oxidation (M)	1064.5576	0.55761802	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			17.198	17.198	2	0.036927	7454	DP1061-13	56.547	40.007			0.98011	1.0093	NaN	1	0	Median	137980000	65596000	72382000	422	67	392	822	1909	1909	73	1	9606
EIGYPVMIK	1	0	Unmodified	1048.5627	0.5627034	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.248	18.248	2	0.026593	8991	DP1061-13	72.789	53.086			0.96171	0.99038	NaN	1	0	Median	52408000	25668000	26741000	423	67	392	823	1910;1911	1911		2	9606
EIIDLVLDR	0	1	Unmodified	1084.6128	0.61282471	252;400	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3.33	0.471			2	1		20.959	20.959	1;2	3.1444E-33	12218	DP1061-13	170.3	170.3			1.437	1.4615	3.5256	3	0	Median	205740000	79203000	126530000	424	252;400	393	824;825;826	1912;1913;1914;1915;1916;1917;1918	1914		7	9606
EILGTAQSVGCNVDGR	0	1	Unmodified	1674.7995	0.79953264	133	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	16.56	16.56	2	9.662399999999999E-21	6565	DP1061-15	129.37	129.37			1.7284	1.6234	NaN	1	0	Median	14727000	5333500	9393700	425	133	394	827	1919;1920;1921;1922	1920		4	9606
EIMAPWAQTVVTGR	0	1	Oxidation (M)	1573.7923	0.79226242	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.508	19.508	2	0.015244	8169	DP1061-11	87.719	37.252			NaN	NaN	NaN	0	0	Median	1678300	0	1678300	426	26	395	828	1923;1924	1924	19	2	9606
EITALAPSTMK	1	0	Oxidation (M)	1176.606	0.60602477	199;249;228	P60709;P63267;P68133;P68032;P62736;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		15.006	15.006	2	0.00029019	5153	DP1061-14	94.409	46.45			1.3671	1.3058	NaN	1	0	Median	6721500	2931600	3789900	427	199;228;249	396	829	1925;1926	1925	227	2	9606
EITEACVGSCEAK	1	0	Unmodified	1452.6225	0.62247948	177	P49848	TAF6	Transcription initiation factor TFIID subunit 6	yes	yes	0	0	0	3	0			1			14.147	14.147	2	0.052216	4498	DP1061-13	69.01	30.26			NaN	NaN	NaN	0	0	Median	0	0	0	428	177	397	830	1927	1927		1	9606
EIVHLQAGQCGNQIGAK	1	0	Unmodified	1821.9156	0.91556545	253	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3	0			2			15.162	15.162	2;3	1.2033E-100	5383	DP1061-13	214.65	0			1.6634	1.713	NaN	1	0	Median	45308000	20511000	24797000	429	253	398	831;832	1928;1929;1930;1931;1932	1930		5	9606
EKPQTLPSAVKGDEK	3	0	Unmodified	1625.8625	0.86245047	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	2	3.67	0.471			1	2		12.484	12.484	3;4	4.2765E-10	2625	DP1061-14	147.51	94.369			NaN	NaN	NaN	0	0	Median	126630000	0	126630000	430	285	399	833;834;835	1933;1934;1935;1936;1937;1938	1936		6	9606
ELAEDGYSGVEVR	0	1	Unmodified	1422.6627	0.66268803	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				4		16.566	16.566	2	1.3389E-07	6475	DP1061-14	111.27	95.302			1.4921	1.5246	NaN	1	0	Median	23431000	9214500	14217000	431	117	400	836;837;838;839	1939;1940;1941;1942;1943;1944	1939		6	9606
ELALALQEALEPAVR	0	1	Unmodified	1621.9039	0.90392136	341	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		21.912	21.912	2	1.1429E-12	12136	DP1061-14	164.48	100.11			NaN	NaN	NaN	0	0	Median	3527700	0	3527700	432	341	401	840	1945;1946	1946		2	9606
ELASLSFSGDYSGTR	0	1	Unmodified	1588.7369	0.73691561	466				yes	yes	0	0	0	2	0		2				19.084	19.084	2	0.0092408	7433	DP1061-12	66.92	66.92	+		0.72403	0.78482	8.9325	2	0	Median	56777000	32143000	24634000	433	466	402	841;842	1947;1948;1949;1950	1947		4	9606
ELCQQIHAECKR	1	1	Unmodified	1570.7344	0.73442996	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	1	2	0		1				12.549	12.549	3	0.0091501	2321	DP1061-12	78.692	29.382			NaN	NaN	NaN	0	0	Median	4365900	0	4365900	434	359	403	843	1951;1952;1953	1951		3	9606
ELDALDANDELTPLGR	0	1	Unmodified	1740.853	0.853008	279	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				20.258	20.258	2	3.9231E-06	9295	DP1061-12	123.95	77.242			NaN	NaN	NaN	0	0	Median	0	0	0	435	279	404	844	1954	1954		1	9606
ELEFYLR	0	1	Unmodified	968.49673	0.49673232	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.362	19.362	2	0.010426	9601	DP1061-15	94.163	37.653			1.617	1.5188	NaN	1	0	Median	8469000	3138100	5330900	436	212	405	845	1955;1956	1955		2	9606
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	1	0	Unmodified	3054.4869	0.48691928	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			21.953	21.953	3	2.7217000000000002E-83	13442	DP1061-13	189.11	164.66			2.8534	2.9385	NaN	1	0	Median	66190000	16231000	49959000	437	85	406	846	1957;1958;1959;1960	1958		4	9606
ELFYEDR	0	1	Unmodified	970.43961	0.43961137	303	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		16.831	16.831	2	4.8308E-07	6855	DP1061-14	128.48	108.2			0.99897	1.0207	NaN	1	0	Median	13033000	6541700	6491300	438	303	407	847	1961;1962;1963	1963		3	9606
ELGITALHIK	1	0	Unmodified	1093.6495	0.64954457	215	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	17.224	17.224	2	0.00029251	7396	DP1061-15	101.25	57.445			1.3086	1.169	NaN	1	0	Median	5832400	2310900	3521500	439	215	408	848	1964;1965	1964		2	9606
ELIIGDR	0	1	Unmodified	814.45487	0.45486751	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			15.825	15.825	2	0.029746	6046	DP1061-13	83.614	20.9			1.0025	1.0271	NaN	1	0	Median	18537000	9896400	8640700	440	122	409	849	1966	1966		1	9606
ELIPNIPFQMLLR	0	1	Oxidation (M)	1598.8854	0.88543452	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.33	0.471		2	1			23.311	23.311	2;3	4.6499E-05	12657	DP1061-12	91.087	91.087			0.78514	0.85107	6.5593	3	0	Median	507320000	277280000	230040000	441	89	410	850;851;852	1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980	1967	124	14	9606
ELIPNIPFQMLLR	0	1	Unmodified	1582.8905	0.8905199	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				24.458	24.458	2	1.0889E-16	14057	DP1061-12	135.43	135.43			0.76789	0.83237	NaN	1	0	Median	153280000	85412000	67865000	442	89	410	853;854	1981;1982;1983;1984;1985	1984		5	9606
ELLAALQK	1	0	Unmodified	884.53312	0.53311783	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				17.152	17.152	2	0.051804	5986	DP1061-12	76.035	33.56			NaN	NaN	NaN	0	0	Median	10164000	0	10164000	443	361	411	855	1986	1986		1	9606
ELLDLAMQNAWFR	0	1	Oxidation (M)	1621.7923	0.79226242	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	1	0	2	0		1				22.489	22.489	2	1.2932E-05	11839	DP1061-12	144.77	62.354			NaN	NaN	NaN	0	0	Median	4474000	0	4474000	444	359	412	856	1987;1988	1987	380	2	9606
ELTAVVQK	1	0	Unmodified	886.51238	0.51238239	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		13.757	13.757	2	0.050528	3943	DP1061-14	70.912	46.882			1.4041	1.341	NaN	1	0	Median	11761000	5428500	6332900	445	117	413	857	1989	1989		1	9606
ELTDEEAER	0	1	Unmodified	1090.4778	0.47784737	441	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		12.854	12.854	2	0.019092	3094	DP1061-14	111.95	54.666			NaN	NaN	NaN	0	0	Median	2964600	0	2964600	446	441	414	858	1990;1991	1991		2	9606
ELTHTMGK	1	0	Oxidation (M)	931.44332	0.44331654	467				yes	yes	0	1	0	2	0		1				13.496	13.496	2	0.035053	2975	DP1061-12	60.799	14.337	+		1.5673	1.6468	NaN	1	0	Median	24855000	10143000	14712000	447	467	415	859	1992	1992	463	1	9606
ELTTEIDNNIEQISSYK	1	0	Unmodified	1995.9637	0.96368066	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	4	0.816			1	1	1	20.322	20.322	2	1.0219E-14	11519	DP1061-13	187.11	113.84		+	NaN	NaN	NaN	0	0	Median	25122000	25122000	0	448	15	416	860;861;862	1993;1994;1995;1996;1997;1998;1999;2000	1994		8	9606
EMAQYASNITSVLCQFPSQQIANILDSHAATLNR	0	1	Oxidation (M)	3806.8356	0.83560715	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1				23.808	23.808	3	1.7487E-106	13446	DP1061-12	207.97	207.97			0.85998	0.93219	NaN	1	0	Median	9965200	4967900	4997300	449	287	417	863	2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012;2013	2007	280	13	9606
ENDPSVMR	0	1	Unmodified	946.41783	0.41783007	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.006	13.006	2	0.044433	2372	DP1061-11	72.485	56.282			0.85127	0.87789	NaN	1	0	Median	40478000	22166000	18312000	450	287	418	864	2014	2014		1	9606
ENEFSFEDNAIR	0	1	Unmodified	1469.6423	0.64228694	311	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	yes	no	0	0	0	1	0	1					18.819	18.819	2	1.8168E-05	7325	DP1061-11	142.98	88.784			NaN	NaN	NaN	0	0	Median	2604000	0	2604000	451	311	419	865	2015;2016	2016		2	9606
ENFQNWLK	1	0	Unmodified	1077.5243	0.52434406	144	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	18.836	18.836	2	0.028082	9039	DP1061-15	98.299	27.38			NaN	NaN	NaN	0	0	Median	6923300	0	6923300	452	144	420	866	2017;2018	2017		2	9606
ENNVDAVHPGYGFLSER	0	1	Unmodified	1902.886	0.88603946	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.93	0.929		6	5	3	1	18.032	18.032	2;3	2.6728E-100	6635	DP1061-12	249.32	226.31			0.76989	0.78664	14.283	5	0	Median	288710000	161350000	127360000	453	89	421	867;868;869;870;871;872;873;874;875;876;877;878;879;880;881	2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049	2027		31	9606
ENPSEEAQNLVEFTDEEGYGR	0	1	Unmodified	2412.0353	0.035342051	283	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			1			20.852	20.852	2	7.8412E-57	12159	DP1061-13	216	186.79			NaN	NaN	NaN	0	0	Median	4602800	0	4602800	454	283	422	882	2050;2051;2052	2051		3	9606
EPQVYVLAPPQEELSK	1	0	Unmodified	1825.9462	0.9461801	4	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3	0			1			19.288	19.288	2	0.00030568	10106	DP1061-13	148.89	125.77		+	NaN	NaN	NaN	0	0	Median	30009000	30009000	0	455	4	423	883	2053	2053		1	
EQEKKLLVSDSNSFMER	2	1	Oxidation (M)	2054.9943	0.99426928	356	Q7Z3I7	ZNF572	Zinc finger protein 572	yes	yes	0	1	2	5	0					1	21.254	21.254	2	0.029734	11558	DP1061-15	80.834	7.1681			NaN	NaN	NaN	0	0	Median	20871000	20871000	0	456	356	424	884	2054	2054	376	1	9606
EQGVLSFWR	0	1	Unmodified	1120.5665	0.56654322	66;94	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		20.691	20.691	2	2.9361E-17	10844	DP1061-14	154.49	154.49			1.4245	1.4555	NaN	1	0	Median	41610000	15998000	25611000	457	66;94	425	885	2055;2056;2057;2058	2055		4	9606
EQIVPKPEEEVAQK	2	0	Unmodified	1622.8516	0.85155143	106	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	14.278	14.278	3	0.030971	4529	DP1061-15	46.797	17.434			1.337	1.3711	NaN	1	0	Median	4330400	1789400	2541000	458	106	426	886	2059	2059		1	9606
EQLDNQLDAYMSK	1	0	Oxidation (M)	1569.6981	0.69808726	453	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				2		16.576	16.576	2	0.0065197	6599	DP1061-14	94.363	48.361			NaN	NaN	NaN	0	0	Median	1609600	1609600	0	459	453	427	887;888	2060;2061;2062	2060	449	3	9606
EQQAQVEKEDFSDMVAEHAAK	2	0	Oxidation (M)	2405.0805	0.080518105	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	1	2	0		2				15.087	15.087	3	0.0035608	4340	DP1061-12	80.142	33.06			NaN	NaN	NaN	0	0	Median	4968200	0	4968200	460	296	428	889;890	2063;2064	2064	324	2	9606
EQSQLTATQTR	0	1	Unmodified	1261.6262	0.62624295	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					12.667	12.667	2	0.002427	2109	DP1061-11	133.23	77.696			NaN	NaN	NaN	0	0	Median	3646500	0	3646500	461	347	429	891	2065;2066	2065		2	9606
EQTFSGGTSQDTK	1	0	Unmodified	1384.6107	0.61065246	445	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				12.568	12.568	2	0.01023	2365	DP1061-12	86.014	37.591			NaN	NaN	NaN	0	0	Median	0	0	0	462	445	430	892	2067	2067		1	9606
EQVNDLFSR	0	1	Unmodified	1106.5356	0.53563702	258	P78347;Q86UP8;Q6EKJ0	GTF2I;GTF2IRD2;GTF2IRD2B	General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B	yes	no	0	0	0	2	0		1				17.497	17.497	2	0.016658	6337	DP1061-12	77.732	40.005			2.1262	2.3047	NaN	1	0	Median	9556100	3159000	6397100	463	258	431	893	2068;2069	2068		2	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	1	0	Unmodified	3326.5217	0.52172616	305	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	3	0			1			20.043	20.043	3	0.0035133	11305	DP1061-13	38.012	6.3888			1.5529	1.5992	NaN	1	0	Median	35414000	12545000	22869000	464	305	432	894	2070	2070		1	9606
ESIEEPSAK	1	0	Unmodified	988.47131	0.47130543	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					12.848	12.848	2	0.039628	2334	DP1061-11	77.732	41.337			NaN	NaN	NaN	0	0	Median	1398200	0	1398200	465	48	433	895	2071	2071		1	9606
ESLCQAALGLILK	1	0	Unmodified	1414.7854	0.78538612	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		23.25	23.25	2	0.00037112	14995	DP1061-13	87.913	87.913			0.68475	0.67911	44.913	2	0	Median	55031000	29504000	25528000	466	395	434	896;897	2072;2073;2074;2075;2076	2074		4	9606
ESRYEEEEEQSR	0	2	Unmodified	1569.6543	0.65430819	457	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	0	1					12.531	12.531	3	0.036692	2068	DP1061-11	74.987	36.028			NaN	NaN	NaN	0	0	Median	1121200	0	1121200	467	457	435	898	2077	2077		1	9606
ESSANNSVSPSESLR	0	1	Unmodified	1562.7172	0.7172428	274	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	3	0			1			13.986	13.986	2	0.018561	4314	DP1061-13	79.492	48.307			NaN	NaN	NaN	0	0	Median	0	0	0	468	274	436	899	2078	2078		1	9606
ESTGAQVQVAGDMLPNSTER	0	1	Oxidation (M)	2104.9695	0.96951109	319;320	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	1	0	4	0				1		16.093	16.093	2	5.0694E-48	6043	DP1061-14	159.18	132.64			1.4863	1.5187	NaN	1	0	Median	5507200	2915900	2591300	469	319;320	437	900	2079;2080;2081;2082;2083	2081	344	5	9606
ESYSIYVYK	1	0	Unmodified	1150.5546	0.55464113	75	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	5	0					1	17.567	17.567	2	0.005483	7682	DP1061-15	93.429	68.291			1.5727	1.4049	NaN	1	0	Median	21978000	8313200	13665000	470	75	438	901	2084;2085;2086;2087	2086		4	9606
ESYSVYVYK	1	0	Unmodified	1136.539	0.53899107	44	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	0	5	0					1	16.807	16.807	2	0.029319	6850	DP1061-15	71.877	37.705			1.5042	1.3438	NaN	1	0	Median	25189000	9999800	15189000	471	44	439	902	2088;2089	2088		2	9606
ETAENYLGHTAK	1	0	Unmodified	1332.631	0.63099397	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			13.758	13.758	3	0.0010322	4028	DP1061-13	75.088	55.461			1.2016	1.2374	NaN	1	0	Median	11305000	4313400	6991800	472	146	440	903	2090;2091	2091		2	9606
ETANAIVSQQTPQR	0	1	Unmodified	1541.7798	0.77978347	153	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		14.415	14.415	2	2.7541E-08	4671	DP1061-14	134.38	96.685			NaN	NaN	NaN	0	0	Median	2020900	0	2020900	473	153	441	904	2092;2093;2094	2094		3	9606
ETEGDVTSVK	1	0	Unmodified	1063.5033	0.50333384	183	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			12.526	12.526	2	0.011523	2693	DP1061-13	124.92	44.46			NaN	NaN	NaN	0	0	Median	9917900	0	9917900	474	183	442	905	2095;2096	2096		2	9606
ETESQLLPDVGAIVTCK	1	0	Unmodified	1858.9346	0.93462914	449	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	5	0					1	20.624	20.624	2	0.036858	10982	DP1061-15	77.527	49.973			NaN	NaN	NaN	0	0	Median	3104000	0	3104000	475	449	443	906	2097	2097		1	9606
ETVEEQASTTER	0	1	Unmodified	1378.6212	0.62121715	301	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	2	0		2				13.107	13.107	2	0.021106	2834	DP1061-12	77.533	17.415			NaN	NaN	NaN	0	0	Median	0	0	0	476	301	444	907;908	2098;2099	2099		2	9606
EVADSYAQNAK	1	0	Unmodified	1194.5517	0.55168102	411	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		12.839	12.839	2	2.0056E-05	3022	DP1061-14	106.68	77.534			3.1486	3.0073	NaN	1	0	Median	5509100	1224200	4284900	477	411	445	909	2100;2101	2101		2	9606
EVATNSELVQSGK	1	0	Unmodified	1360.6834	0.68342347	6	P02533;CON__P02533;CON__Q04695;Q04695;CON__Q9QWL7	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	yes	no	0	0	0	2	1	1		1			14.02	14.02	2	0.00015701	3336	DP1061-11	110.86	67.415		+	NaN	NaN	NaN	0	0	Median	4457000	4457000	0	478	6	446	910;911	2102;2103;2104;2105;2106;2107	2104		6	9606
EVDEQMLNVQNK	1	0	Oxidation (M)	1461.677	0.67695789	253;77;305	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.5	0.5			1	1		14.339	14.339	2	2.0686E-17	4596	DP1061-13	140.83	92.941			1.569	1.556	5.8675	2	0	Median	60676000	24232000	36444000	479	77;253;305	447	912;913	2108;2109;2110;2111;2112;2113;2114;2115;2116	2111	93	9	9606
EVDEQMLNVQNK	1	0	Unmodified	1445.682	0.68204326	253;77;305	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.5	0.5			1	1		16.217	16.217	2	2.0785E-31	6454	DP1061-13	158.76	109.76			1.64	1.6889	NaN	1	0	Median	26044000	10350000	15694000	480	77;253;305	447	914;915	2117;2118;2119;2120;2121;2122	2118		6	9606
EVFFMNTQSIVQLVQR	0	1	Oxidation (M)	1953.9982	0.99823245	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.38	1	2	7	1	3		24.168	24.168	2;3	2.7928E-39	10409	DP1061-11	163.62	163.62			0.97665	1.0401	11.49	4	0	Median	93263000	50732000	42531000	481	287	448	916;917;918;919;920;921;922;923;924;925;926;927;928	2123;2124;2125;2126;2127;2128;2129;2130;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148	2124	281	26	9606
EVFFMNTQSIVQLVQR	0	1	Unmodified	1938.0033	0.003317824	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		2				23.377	23.377	2;3	3.0601E-197	12899	DP1061-12	222.55	222.55			0.91956	0.99678	3.9736	2	0	Median	35333000	18006000	17327000	482	287	448	929;930	2149;2150;2151;2152;2153;2154	2154		6	9606
EVFGTFGIPFLLR	0	1	Unmodified	1494.8235	0.82348619	383	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	2	0		1				25.009	25.009	2	0.00011555	14738	DP1061-12	113.62	71.412			NaN	NaN	NaN	0	0	Median	3249000	0	3249000	483	383	449	931	2155;2156	2155		2	9606
EVIELPLTNPELFQR	0	1	Unmodified	1796.9672	0.96724989	225	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	4	0				1		22.253	22.253	2	0.00016429	12509	DP1061-14	115.33	46.316			NaN	NaN	NaN	0	0	Median	0	0	0	484	225	450	932	2157	2157		1	9606
EVIINSR	0	1	Unmodified	829.46577	0.46576654	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		13.567	13.567	2	4.3436E-06	3322	DP1061-13	124.34	30.18			1.0741	1.0876	5.9401	3	0	Plateau	682260000	321860000	360410000	485	67	451	933;934;935	2158;2159;2160;2161;2162;2163	2159		6	9606
EVLDQVCYR	0	1	Unmodified	1180.5547	0.55465791	328	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				16.478	16.478	2	0.019461	5436	DP1061-12	101.64	63.557			NaN	NaN	NaN	0	0	Median	5367900	0	5367900	486	328	452	936	2164;2165	2165		2	9606
EVMLILIR	0	1	Unmodified	985.59942	0.59942325	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				20.989	20.989	2	0.044609	10104	DP1061-12	81.297	23.833			NaN	NaN	NaN	0	0	Median	9865300	0	9865300	487	46	453	937	2166;2167	2167		2	9606
EVPAVPETLKK	2	0	Unmodified	1209.6969	0.69688869	104	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		14.556	14.556	3	0.049799	4818	DP1061-14	33.542	1.6989			1.4866	1.6478	NaN	1	0	Median	4921500	2143200	2778200	488	104	454	938	2168	2168		1	9606
EVQTNDLKEVVNK	2	0	Unmodified	1514.794	0.79403655	202	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		14.675	14.675	3	0.00052638	4966	DP1061-14	80.312	52.259			1.3413	1.4866	NaN	1	0	Median	6181300	2825200	3356000	489	202	455	939	2169;2170	2170		2	9606
EVSFQSTGESEWK	1	0	Unmodified	1512.6733	0.67325272	277	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		17.335	17.335	2	9.5613E-07	7401	DP1061-14	152.7	59.858			NaN	NaN	NaN	0	0	Median	8150800	0	8150800	490	277	456	940	2171;2172	2172		2	9606
EVSSATNALR	0	1	Unmodified	1046.5356	0.53563702	81	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	4	0				1		13.334	13.334	2	0.00059851	3535	DP1061-14	99.802	61.716			0.75916	0.77567	NaN	1	0	Median	5311600	2991900	2319700	491	81	457	941	2173;2174	2173		2	9606
EVYQQQQYGSGGR	0	1	Unmodified	1498.6801	0.68006943	397	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	4	0				2		13.663	13.663	2	0.00099276	3938	DP1061-14	119.27	73.621			NaN	NaN	NaN	0	0	Median	0	0	0	492	397	458	942;943	2175;2176	2176		2	9606
EYEAEGIAK	1	0	Unmodified	1008.4764	0.47639081	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	13.753	13.753	1;2	6.2538E-17	4355	DP1061-13	148.38	97.75			0.903	0.89556	11.908	4	0	Median	551850000	289030000	262820000	493	417	459	944;945;946;947	2177;2178;2179;2180;2181;2182;2183;2184	2181		8	9606
EYEAEGIAKDGAK	2	0	Unmodified	1379.6569	0.65687437	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			12.99	12.99	2	3.4788999999999996E-53	3144	DP1061-13	190.57	155.13			0.85508	0.86303	NaN	1	0	Median	7387900	3936100	3451700	494	417	460	948;949	2185;2186;2187;2188;2189;2190;2191	2188		7	9606
EYSSELNAPSQESDSHPR	0	1	Unmodified	2031.877	0.87699092	175	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	2.5	0.5		1	1			14.181	14.181	3	0.00082046	4394	DP1061-13	105.06	84.207			NaN	NaN	NaN	0	0	Median	11348000	0	11348000	495	175	461	950;951	2192;2193;2194;2195;2196	2196		5	9606
EYTAAVEAK	1	0	Unmodified	980.48148	0.48147619	396	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		12.993	12.993	2	0.036136	3278	DP1061-14	69.598	36.758			1.0446	0.99771	NaN	1	0	Median	4326900	1868200	2458600	496	396	462	952	2197	2197		1	9606
FAEAFEAIPR	0	1	Unmodified	1149.5819	0.58185893	183	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			18.749	18.749	2	0.011773	9580	DP1061-13	94.85	51.767			NaN	NaN	NaN	0	0	Median	8095500	0	8095500	497	183	463	953	2198;2199;2200	2199		3	9606
FAEALGSTEAK	1	0	Unmodified	1122.5557	0.55570376	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				14.991	14.991	2	0.0089536	4231	DP1061-12	87.258	41.923			NaN	NaN	NaN	0	0	Median	4509100	0	4509100	498	258	464	954	2201	2201		1	9606
FAEFQYLQPGPPR	0	1	Unmodified	1548.7725	0.77251325	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				19.869	19.869	2	0.00028879	8885	DP1061-12	102.07	62.194			NaN	NaN	NaN	0	0	Median	8630600	0	8630600	499	364	465	955	2202;2203	2203		2	9606
FAGYVTSIAATELEDDDDDYSSSTSLLGQK	1	0	Unmodified	3197.4412	0.44119368	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				22.304	22.304	3	2.3892E-11	11551	DP1061-12	124.17	113.36			NaN	NaN	NaN	0	0	Median	33939000	0	33939000	500	46	466	956	2204;2205;2206;2207	2205		4	9606
FANPFPAAVR	0	1	Unmodified	1088.5767	0.57671398	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	18.434	18.434	2	7.3832E-08	9040	DP1061-13	116.88	116.88			0.79167	0.91566	10.865	3	0	Plateau	270690000	145280000	125420000	501	68	467	957;958;959	2208;2209;2210;2211;2212;2213;2214;2215	2208		8	9606
FAQHGTFEYEYSQR	0	1	Unmodified	1761.7747	0.7746981	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		2				16.137	16.137	2;3	0.00040107	5166	DP1061-12	105.36	55.858			NaN	NaN	NaN	0	0	Median	25169000	0	25169000	502	116	468	960;961	2216;2217	2217		2	9606
FAQSAPGSPLSSQPVLITVQR	0	1	Unmodified	2182.1746	0.17461691	268	Q01167	FOXK2	Forkhead box protein K2	yes	yes	0	0	0	3	0			1			19.649	19.649	2	0.0077311	10605	DP1061-13	78.508	43.501			NaN	NaN	NaN	0	0	Median	0	0	0	503	268	469	962	2218	2218		1	9606
FASFIDK	1	0	Unmodified	826.4225	0.42250475	17;19;12	CON__P35908v2;P35908;CON__P35908;Q5XKE5;CON__Q5XKE5;Q01546;CON__P12035;CON__Q01546;CON__Q7Z794;CON__P19013;CON__O95678;P12035;CON__Q6NXH9;P19013;Q7Z794;O95678;CON__Q9R0H5;CON__Q6ISB0;CON__P08729;CON__Q32MB2;CON__Q3KNV1;CON__Q3SY84;CON__Q9DCV7;CON__Q9H552;CON__Q9NSB2;CON__Q7RTS7;Q14CN4;CON__P07744;P08729;Q3SY84;CON__Q14CN4-1;Q9NSB2;Q86Y46;CON__Q6IME9;Q7RTS7;P05787;CON__P05787;CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7;CON__P50446	KRT2;KRT79;KRT76;KRT3;KRT4;KRT77;KRT75;KRT72;KRT7;KRT71;KRT84;KRT73;KRT74;KRT8	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 71;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 8	no	no	0	0	0	3	2	1				1	16.853	16.853	2	0.017005	6701	DP1061-15	102.77	54.013		+	NaN	NaN	NaN	0	0	Median	17554000	17554000	0	504	17;12;19	470	963;964	2219;2220;2221	2221		3	9606
FASWALESDNNTALLLSK	1	0	Unmodified	1979	6.5851004E-06	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	2	0		1				21.738	21.738	2	0.024688	10974	DP1061-12	82.55	42.034			NaN	NaN	NaN	0	0	Median	3484300	0	3484300	505	292	471	965	2222;2223	2222		2	9606
FCANTCVECR	0	1	Unmodified	1315.5108	0.51076096	302	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		14.28	14.28	2	0.015348	4532	DP1061-14	114.89	83.665			NaN	NaN	NaN	0	0	Median	1413000	0	1413000	506	302	472	966	2224;2225	2224		2	9606
FDCHHCNESLFGK	1	0	Unmodified	1649.6715	0.67149535	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		14.847	14.847	3	0.00044109	5080	DP1061-14	80.69	71.64			0.97805	0.93415	NaN	1	0	Median	6831300	3519900	3311400	507	307	473	967	2226;2227	2226		2	9606
FDETEQALANER	0	1	Unmodified	1421.6423	0.64228694	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	3	1		1		1		16.214	16.214	2	0.00014062	5161	DP1061-12	125.74	77.453			NaN	NaN	NaN	0	0	Median	8506200	0	8506200	508	352	474	968;969	2228;2229;2230	2229		3	9606
FDGALNVDLTEFQTNLVPYPR	0	1	Unmodified	2408.2012	0.20122559	252;400	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			23.705	23.705	2	7.335E-48	15598	DP1061-13	161.04	125.92			0.90621	0.92166	NaN	1	0	Median	4236400	2126700	2109700	509	252;400	475	970	2231;2232;2233;2234;2235	2233		5	9606
FDLMYAK	1	0	Oxidation (M)	902.42079	0.42079019	252;400	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	1	0	3	0			1			16.784	16.784	2	0.029354	7186	DP1061-13	66.993	35.704			1.4725	1.5164	NaN	1	0	Median	21981000	8298400	13683000	510	252;400	476	971	2236;2237;2238	2238	257	3	9606
FDTGNLCMVTGGANLGR	0	1	Oxidation (M)	1797.8138	0.81380249	227	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	4	0				1		18.408	18.408	2	1.5285E-24	8595	DP1061-14	139.89	116.03			1.1334	1.158	NaN	1	0	Median	8403900	4009600	4394300	511	227	477	972	2239;2240;2241;2242;2243;2244;2245	2245	241	7	9606
FEAHPNDLYVEGLPENIPFR	0	1	Unmodified	2356.1488	0.14879609	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.898	20.898	3	0.019647	10020	DP1061-12	68.134	28.796			NaN	NaN	NaN	0	0	Median	0	0	0	512	258	478	973	2246	2246		1	9606
FEEEGNPYYSSAR	0	1	Unmodified	1547.6529	0.65285163	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.6	0.49			2	3		16.095	16.095	2	3.8803999999999997E-140	6411	DP1061-13	256.38	252.08			0.83991	0.8558	NaN	1	0	Median	100410000	55249000	45161000	513	417	479	974;975;976;977;978	2247;2248;2249;2250;2251;2252;2253;2254;2255;2256	2249		10	9606
FEELCSDLFR	0	1	Unmodified	1314.5914	0.59143734	85;101	P0DMV9;P0DMV8;P17066;P48741	HSPA1B;HSPA1A;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	3	0			1			20.164	20.164	2	0.01209	11252	DP1061-13	104.17	49.445			NaN	NaN	NaN	0	0	Median	7987200	0	7987200	514	85;101	480	979	2257	2257		1	9606
FEELNADLFR	0	1	Unmodified	1252.6088	0.60880197	88	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0			1			20.235	20.235	2	3.482E-09	11285	DP1061-13	168.83	77.509			NaN	NaN	NaN	0	0	Median	14185000	0	14185000	515	88	481	980	2258;2259	2259		2	9606
FELTGIPPAPR	0	1	Unmodified	1196.6554	0.65535823	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			18.727	18.727	2	0.011987	10535	DP1061-13	69.598	69.598			3.7495	3.8244	NaN	1	0	Median	71357000	15303000	56054000	516	88	482	981	2260	2260		1	9606
FEPPQSDSDGQR	0	1	Unmodified	1361.5848	0.58477206	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2.8	0.4		1	4			13.915	13.915	2	2.864E-05	3934	DP1061-13	132.88	90.537			NaN	NaN	NaN	0	0	Median	6133700	0	6133700	517	28	483	982;983;984;985;986	2261;2262;2263;2264;2265;2266;2267	2266		7	9606
FESPEVAER	0	1	Unmodified	1062.4982	0.49818889	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			14.76	14.76	2	0.0050082	5049	DP1061-13	94.309	78.107			1.0428	1.0664	NaN	1	0	Median	32897000	14718000	18179000	518	188	484	987	2268;2269;2270	2270		3	9606
FFVAPFPEVFGK	1	0	Unmodified	1383.7227	0.72270951	7	CON__P02662			yes	yes	0	0	0	3	1		1		1		23.127	23.127	2	0.00036338	13062	DP1061-14	101.66	50.605		+	NaN	NaN	NaN	0	0	Median	35084000	35084000	0	519	7	485	988;989	2271;2272;2273;2274	2274		4	
FFVMTSLR	0	1	Oxidation (M)	1015.5161	0.51608756	194	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	1	0	4	0				1		17.84	17.84	2	0.0047834	7811	DP1061-14	89.296	22.496			1.3476	1.377	NaN	1	0	Median	5947300	2303600	3643800	520	194	486	990	2275;2276	2275	222	2	9606
FGAYIVDGLR	0	1	Unmodified	1109.5869	0.58694431	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.14	0.99	2	3	1	1		19.651	19.651	2	2.285E-05	10203	DP1061-13	111.74	111.74			0.96804	1.03	6.7725	5	0	Median	403100000	200690000	202410000	521	287;26	487	991;992;993;994;995;996;997	2277;2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288;2289;2290	2289		14	9606
FGDPVVQSDMK	1	0	Oxidation (M)	1237.5649	0.56488824	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	0	3	0			1			14.995	14.995	2	0.0059062	5196	DP1061-13	65.695	65.695			4.0133	4.133	NaN	1	0	Median	15534000	2969500	12565000	522	85	488	998	2291;2292	2291	110	2	9606
FGFAIGSQTTK	1	0	Unmodified	1155.5924	0.59242362	372	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	5	0					1	17.713	17.713	2	0.019154	7862	DP1061-15	81.525	34.531			NaN	NaN	NaN	0	0	Median	4759800	0	4759800	523	372	489	999	2293;2294	2294		2	9606
FGFPEGSVELYAEK	1	0	Unmodified	1571.7508	0.75077476	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		20.318	20.318	2	2.2574E-13	10466	DP1061-14	115.91	81.828			1.3756	1.3139	NaN	1	0	Median	10061000	4016200	6044600	524	117	490	1000	2295;2296;2297;2298	2298		4	9606
FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK	1	0	Unmodified	4091.0653	0.065347814	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	5	0					1	22.57	22.57	3	2.2062E-12	12866	DP1061-15	89.893	74.482		+	NaN	NaN	NaN	0	0	Median	3248500	3248500	0	525	17	491	1001	2299;2300;2301;2302	2300		4	9606
FGGNKVIEK	2	0	Unmodified	990.54983	0.54983053	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.63	12.63	2	0.029711	2091	DP1061-11	80.438	35.991			1.0622	1.2725	NaN	1	0	Median	1794000	909540	884420	526	287	492	1002	2303	2303		0	9606
FGQAATMEGIGAIGGTPPAFNR	0	1	Oxidation (M)	2178.0528	0.052787212	318	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	0	3	0			1			19.301	19.301	2	8.2724E-11	10257	DP1061-13	137.17	108.09			NaN	NaN	NaN	0	0	Median	13143000	0	13143000	527	318	493	1003	2304;2305;2306	2306	338	3	9606
FGQGGAGPVGGQGPR	0	1	Unmodified	1340.6585	0.65854613	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				14.514	14.514	2	0.02354	3753	DP1061-12	81.865	40.748			NaN	NaN	NaN	0	0	Median	11168000	0	11168000	528	116	494	1004	2307;2308	2307		2	9606
FGSGMNMGR	0	1	Oxidation (M)	971.39532	0.39532049	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			12.907	12.907	2	0.0093466	3148	DP1061-13	73.26	67.157			1.2131	1.2433	NaN	1	0	Median	16855000	8011600	8843500	529	188	495	1005	2309;2310	2310	202;203	2	9606
FGVSSESKPEEVKK	3	0	Unmodified	1549.7988	0.79878758	176	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	2	2	0		1				12.562	12.562	3	0.010789	2329	DP1061-12	75.589	35.216			NaN	NaN	NaN	0	0	Median	5308800	0	5308800	530	176	496	1006	2311	2311		1	9606
FIAHVPVPSQQEIEEALVR	0	1	Unmodified	2161.1532	0.15315318	435	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	yes	yes	0	0	0	4	0				1		20.848	20.848	3	0.018534	11074	DP1061-14	70.837	39.797			NaN	NaN	NaN	0	0	Median	0	0	0	531	435	497	1007	2312	2312		1	9606
FIDTSQFILNR	0	1	Unmodified	1352.7089	0.70885036	42	O60220	TIMM8A	Mitochondrial import inner membrane translocase subunit Tim8 A	yes	yes	0	0	0	5	0					1	20.135	20.135	2	1.8893E-07	10439	DP1061-15	167.23	102.07			NaN	NaN	NaN	0	0	Median	12431000	0	12431000	532	42	498	1008	2313	2313		1	9606
FIDTTLAITSR	0	1	Unmodified	1236.6714	0.67140222	458	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	yes	yes	0	0	0	5	0					1	18.401	18.401	2	0.0043036	8559	DP1061-15	104.42	43.742			NaN	NaN	NaN	0	0	Median	10602000	0	10602000	533	458	499	1009	2314;2315;2316;2317	2315		4	9606
FIGPSPEVVR	0	1	Unmodified	1099.6026	0.60259438	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.83	1.34	1	2	1	1	1	17.093	17.093	2	0.00073849	6768	DP1061-14	99.139	99.139			0.74998	0.78402	8.7201	5	0	Median	470930000	252190000	218740000	534	89	500	1010;1011;1012;1013;1014;1015	2318;2319;2320;2321;2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337	2333		20	9606
FIGPSPEVVRK	1	1	Unmodified	1227.6976	0.69755739	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				15.629	15.629	3	0.00013903	4344	DP1061-12	92.611	44.009			0.8039	0.84139	NaN	1	0	Median	53080000	31855000	21225000	535	89	501	1016;1017	2338;2339;2340	2339		3	9606
FIHDQTSPNPK	1	0	Unmodified	1282.6306	0.63060004	194	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		12.407	12.407	3	0.001102	2554	DP1061-14	78.513	60.323			1.4644	1.3986	NaN	1	0	Median	12662000	4234100	8427500	536	194	502	1018	2341;2342	2341		2	9606
FIIENTDLAVANSIR	0	1	Unmodified	1674.8941	0.89408495	109	P19387	POLR2C	DNA-directed RNA polymerase II subunit RPB3	yes	yes	0	0	0	4	0				1		20.395	20.395	2	0.0010983	10587	DP1061-14	105.25	44.733			NaN	NaN	NaN	0	0	Median	0	0	0	537	109	503	1019	2343	2343		1	9606
FIIGSVSEDNSEDEISNLVK	1	0	Unmodified	2194.0641	0.064122984	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.89	1.37	1	4	1	1	2	21.384	21.384	2	3.8444E-149	12684	DP1061-13	243.3	243.3			0.93032	0.94259	4.4855	4	0	Median	150780000	73239000	77541000	538	287	504	1020;1021;1022;1023;1024;1025;1026;1027;1028	2344;2345;2346;2347;2348;2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371	2361		28	9606
FIMESGAK	1	0	Oxidation (M)	897.4266	0.42660385	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		12.476	12.476	2	0.00043446	2653	DP1061-14	104.21	28.174			1.5206	1.4523	NaN	1	0	Median	26226000	10192000	16034000	539	117	505	1029	2372;2373;2374;2375	2373	158	4	9606
FISHRFGEEILYRIDLCSMLK	1	2	Oxidation (M)	2642.3349	0.33489907	429	Q9P0M2	AKAP7	A-kinase anchor protein 7 isoform gamma	yes	yes	0	1	2	5	0					1	20.09	20.09	3	0.029197	10433	DP1061-15	61.096	15.252			NaN	NaN	NaN	0	0	Median	0	0	0	540	429	506	1030	2376	2376	439	1	9606
FKTQEYPEGR	1	1	Unmodified	1253.6041	0.60405094	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					13.244	13.244	3	0.0048329	2562	DP1061-11	69.346	69.346			0.88454	0.93663	NaN	1	0	Median	3637000	1831400	1805600	541	26	507	1031	2377	2377		1	9606
FLAVGLVDNTVR	0	1	Unmodified	1302.7296	0.7295858	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0.577	1	4	1			19.94	19.94	2	0.00030125	8725	DP1061-12	110.53	87.18			NaN	NaN	NaN	0	0	Median	59649000	0	59649000	542	321	508	1032;1033;1034;1035;1036;1037	2378;2379;2380;2381;2382;2383;2384;2385;2386	2381		9	9606
FLEQQNQVLQTK	1	0	Unmodified	1474.778	0.77799256	60;17	CON__P35908v2;P35908;CON__P35908;CON__Q7Z794;CON__Q6NXH9;Q7Z794;CON__Q9R0H5;P04264;CON__P04264	KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	no	no	0	0	0	3	1.58	1	1		1	1	16.326	16.326	2	2.2635E-35	4940	DP1061-11	215.06	142.45		+	NaN	NaN	NaN	0	0	Median	135420000	135420000	0	543	17;60	509	1038;1039;1040;1041	2387;2388;2389;2390;2391;2392;2393;2394;2395;2396	2388		10	9606
FLFENQTPAHVYYR	0	1	Unmodified	1783.8682	0.86820455	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				18.542	18.542	3	0.00015943	7316	DP1061-12	107.65	66.259			NaN	NaN	NaN	0	0	Median	14041000	0	14041000	544	28	510	1042	2397;2398;2399	2397		3	9606
FLHKHDLDLICR	1	1	Unmodified	1565.8137	0.81366656	210;142	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	1	4	0.707			1	2	1	16.151	16.151	3	0.00017273	6037	DP1061-14	126.12	99.988			NaN	NaN	NaN	0	0	Median	51288000	0	51288000	545	142;210	511	1043;1044;1045;1046	2400;2401;2402;2403;2404;2405	2402		6	9606
FLILPDMLK	1	0	Oxidation (M)	1104.6253	0.62530365	224	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	1	0	5	0					1	20.4	20.4	2	0.016259	10673	DP1061-15	67.032	67.032			2.8709	2.5646	NaN	1	0	Median	9695100	2395800	7299300	546	224	512	1047	2406;2407;2408;2409	2406	240	4	9606
FLPGYVGGIQEGAVTPAGVVNK	1	0	Unmodified	2172.1579	0.15790421	431	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				2		20.012	20.012	2	0.00030212	10194	DP1061-14	96.163	66.475			NaN	NaN	NaN	0	0	Median	1264400	1264400	0	547	431	513	1048;1049	2410;2411	2411		2	9606
FLSDVYPDGFK	1	0	Unmodified	1286.6183	0.61830402	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		21.227	21.227	2	9.1709E-14	10314	DP1061-13	140.83	140.83			0.9708	0.99973	11.539	3	0	Median	180930000	94523000	86411000	548	67	514	1050;1051;1052	2412;2413;2414;2415;2416;2417;2418;2419	2414		8	9606
FLTVMMK	1	0	2 Oxidation (M)	900.4449	0.44489645	213	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	2	0	5	0					1	14.59	14.59	2	0.034934	4833	DP1061-15	48.174	17.505			1.4028	1.2531	NaN	1	0	Median	6155000	2521400	3633600	549	213	515	1053	2420;2421	2421	234;235	2	9606
FLYECPWR	0	1	Unmodified	1169.5328	0.53280025	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			19.582	19.582	1;2	0.00041271	8464	DP1061-12	111.65	111.65			0.86156	0.93391	13.129	3	0	Median	197310000	104620000	92695000	550	89	516	1054;1055;1056	2422;2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433	2425		12	9606
FLYIWPNAR	0	1	Unmodified	1178.6237	0.62366417	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	21.035	21.035	1;2	3.1780000000000004E-33	12340	DP1061-13	170.17	170.17			0.87305	0.85164	10.33	4	0	Median	703460000	359030000	344430000	551	417	517	1057;1058;1059;1060	2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444	2437		11	9606
FMSAYEQR	0	1	Oxidation (M)	1046.4491	0.4491302	326	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	0	3	0			1			13.535	13.535	2	0.01036	3719	DP1061-13	78.77	52.077			2.1835	2.2358	NaN	1	0	Median	22439000	7576000	14863000	552	326	518	1061	2445;2446;2447	2446	357	3	9606
FNADEFEDMVAEK	1	0	Oxidation (M)	1559.645	0.64498906	126	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	5	0					1	18.217	18.217	2	3.2497E-05	8405	DP1061-15	94.465	94.465			1.97	1.7599	NaN	1	0	Median	5776300	2191600	3584700	553	126	519	1062	2448;2449;2450;2451	2451	168	4	9606
FNADEFEDMVAEKR	1	1	Oxidation (M)	1715.7461	0.74610008	126	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	5	0					1	17.309	17.309	3	0.01314	7310	DP1061-15	50.088	50.088			2.0947	2.0119	NaN	1	0	Median	5633100	2000800	3632200	554	126	520	1063	2452;2453	2452	168	2	9606
FNHDGEEEEEDDDYGSR	0	1	Unmodified	2041.741	0.74095094	348	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	3	0			1			13.722	13.722	3	0.035906	3994	DP1061-13	63.392	40.254			NaN	NaN	NaN	0	0	Median	0	0	0	555	348	521	1064	2454	2454		1	9606
FNPFVTSDR	0	1	Unmodified	1081.5193	0.51925868	203	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	17.772	17.772	2	0.040247	7957	DP1061-15	68.224	34.427			1.2444	1.1688	NaN	1	0	Median	8607000	4029400	4577600	556	203	522	1065	2455	2455		1	9606
FPDLTVELNR	0	1	Unmodified	1202.6295	0.62953741	193	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	2	0		1				20.029	20.029	2	0.030059	9042	DP1061-12	82.287	40.86			NaN	NaN	NaN	0	0	Median	0	0	0	557	193	523	1066	2456	2456		1	9606
FPGDSVVTGR	0	1	Unmodified	1033.5193	0.51925868	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.218	16.218	2	5.2402E-05	6464	DP1061-13	106.68	76.365			0.90216	0.92067	3.6761	2	0	Median	93479000	44813000	48666000	558	68	524	1067;1068	2457;2458;2459;2460	2457		4	9606
FPGQLNADLR	0	1	Unmodified	1129.588	0.58800695	253;77;305;297;335	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		17.471	17.471	2	0.00020948	8419	DP1061-13	101.65	68.806			1.4945	1.5247	2.3786	2	0	Median	121840000	50456000	71384000	559	77;253;305;335;297	525	1069;1070	2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471	2466		11	9606
FPGQLNADLRK	1	1	Unmodified	1257.683	0.68296996	253;77;305;297;335	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-3 chain	no	no	0	0	1	3.5	0.5			1	1		15.765	15.765	3	4.0222E-06	5808	DP1061-13	103.31	70.254			1.5279	1.5661	NaN	1	0	Median	67602000	21822000	45780000	560	77;253;305;335;297	526	1071;1072	2472;2473;2474	2473		3	9606
FPQLDSTSFANSR	0	1	Unmodified	1468.6947	0.69465686	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					18.655	18.655	2	8.459E-05	7106	DP1061-11	119.34	48.784			NaN	NaN	NaN	0	0	Median	2307400	0	2307400	561	171	527	1073	2475;2476	2476		2	9606
FQAQSLGTTYIYDIPEMFR	0	1	Oxidation (M)	2295.0882	0.088169665	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.8	0.748	2	2	1			22.351	22.351	2;3	2.7110999999999997E-44	11566	DP1061-12	158.89	158.89			0.8921	0.95523	1.5526	4	0	Median	206890000	107380000	99508000	562	287	528	1074;1075;1076;1077;1078	2477;2478;2479;2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493	2483	282	17	9606
FQAQSLGTTYIYDIPEMFR	0	1	Unmodified	2279.0933	0.093255043	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		2				23.835	23.835	2;3	2.7693E-84	13393	DP1061-12	198.29	198.29			0.98075	1.0631	9.5684	2	0	Median	38724000	20370000	18354000	563	287	528	1079;1080	2494;2495;2496;2497;2498;2499;2500;2501;2502	2496		9	9606
FQDELESGK	1	0	Unmodified	1051.4822	0.48220447	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				14.646	14.646	2	0.027617	3947	DP1061-12	85.161	34.554			NaN	NaN	NaN	0	0	Median	4621200	0	4621200	564	28	529	1081	2503	2503		1	9606
FQRPGDPQSAQDK	1	1	Unmodified	1472.7008	0.70080487	329	Q15637	SF1	Splicing factor 1	yes	yes	0	0	1	3	0			1			12.563	12.563	3	0.015077	2716	DP1061-13	54.276	36.203			3.9142	4.0123	NaN	1	0	Median	9565800	2118700	7447000	565	329	530	1082	2504	2504		1	9606
FRNMVQTAVVPVK	1	1	Oxidation (M)	1503.8232	0.82316861	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	1	1	3	0			1			14.946	14.946	3	0.01063	5214	DP1061-13	74.537	34.062			NaN	NaN	NaN	0	0	Median	9397000	0	9397000	566	285	531	1083	2505;2506	2505	273	2	9606
FSNTGEDWYVLVGVAK	1	0	Unmodified	1783.8781	0.87810054	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				22.151	22.151	2	0.00096893	11445	DP1061-12	109.15	80.242			NaN	NaN	NaN	0	0	Median	9101800	0	9101800	567	321	532	1084	2507;2508	2508		2	9606
FSPDGELYASGSEDGTLR	0	1	Unmodified	1899.8487	0.8486509	452	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				2		18.354	18.354	2	0.00047992	8414	DP1061-14	106.32	77.939			NaN	NaN	NaN	0	0	Median	0	0	0	568	452	533	1085;1086	2509;2510	2509		2	9606
FSSCGGGGGSFGAGGGFGSR	0	1	Unmodified	1764.7274	0.72743033	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.63	1		1		1	16.991	16.991	2	5.695E-11	7312	DP1061-13	139.21	92.48		+	NaN	NaN	NaN	0	0	Median	10035000	10035000	0	569	60	534	1087;1088;1089	2511;2512;2513;2514;2515	2514		5	9606
FSSSSGYGGGSSR	0	1	Unmodified	1234.5214	0.52144352	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	1.41	1	1	1	1	1	12.761	12.761	2	4.086E-06	2902	DP1061-14	147.73	127.96		+	NaN	NaN	NaN	0	0	Median	62692000	62692000	0	570	16	535	1090;1091;1092;1093;1094	2516;2517;2518;2519;2520;2521;2522;2523;2524	2522		9	9606
FSSVTVSTIDEEEEEIEAR	0	1	Unmodified	2168.9961	0.996103	411	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		20.316	20.316	2	0.028617	10504	DP1061-14	73.834	46.28			NaN	NaN	NaN	0	0	Median	0	0	0	571	411	536	1095	2525	2525		1	9606
FSVCVLGDQQHCDEAK	1	0	Unmodified	1891.8193	0.8192818	240	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	16.458	16.458	3	0.0016762	6538	DP1061-15	68.413	68.413			1.3276	1.186	NaN	1	0	Median	10569000	3999900	6568800	572	240	537	1096	2526;2527	2527		2	9606
FTADEAR	0	1	Unmodified	808.37153	0.37153181	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					12.493	12.493	2	0.002756	1991	DP1061-11	122.79	68.265			NaN	NaN	NaN	0	0	Median	7771200	0	7771200	573	347	538	1097	2528;2529	2528		2	9606
FTAVEDQYYCVDCYK	1	0	Unmodified	1959.8019	0.8019004	302	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		18.757	18.757	2	1.0002999999999999E-28	8845	DP1061-14	151.98	134.25			1.2812	1.2237	NaN	1	0	Median	4792600	2376200	2416400	574	302	539	1098	2530;2531;2532;2533;2534;2535	2534		6	9606
FVDGLMIHSGDPVNYYVDTAVR	0	1	Oxidation (M)	2483.1791	0.17910994	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		20.132	20.132	3	4.5553E-13	10220	DP1061-14	106.03	106.03			1.3396	1.3687	NaN	1	0	Median	6888200	2349900	4538300	575	117	540	1099	2536;2537;2538;2539;2540;2541	2536	159	6	9606
FVIATSTK	1	0	Unmodified	865.49092	0.49091866	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		14.961	14.961	2	0.052031	5151	DP1061-14	70.525	44.698			1.7816	1.7017	NaN	1	0	Median	9099800	3923200	5176500	576	272	541	1100	2542	2542		1	9606
FVINYDYPNSSEDYIHR	0	1	Unmodified	2130.9647	0.96468371	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			18.932	18.932	3	6.8703E-15	9783	DP1061-13	147.1	118.02			NaN	NaN	NaN	0	0	Median	7179300	0	7179300	577	102	542	1101	2543;2544;2545	2545		3	9606
FVNVVPTFGK	1	0	Unmodified	1106.6124	0.61243078	237	P62861	FAU	40S ribosomal protein S30	yes	yes	0	0	0	5	0					1	18.813	18.813	2	0.0012603	9053	DP1061-15	96.665	96.665			0.26527	0.23697	NaN	1	0	Median	8093300	5634500	2458800	578	237	543	1102	2546;2547	2547		2	9606
FVSEAELDER	0	1	Unmodified	1193.5564	0.55643205	408	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	4	0				3		15.975	15.975	2	0.020162	5933	DP1061-14	91.087	45.115			NaN	NaN	NaN	0	0	Median	0	0	0	579	408	544	1103;1104;1105	2548;2549;2550	2549		3	9606
FVVMVTPEDLK	1	0	Oxidation (M)	1292.6686	0.66862503	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	2.67	1.49	2	1	1	1	1	19.508	19.508	2	2.7861E-09	7345	DP1061-11	125.71	56.867			0.87907	0.85165	16.767	6	0	Median	400660000	211050000	189610000	580	287;26	545	1106;1107;1108;1109;1110;1111	2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577;2578;2579	2554	20	29	9606
FVVMVTPEDLK	1	0	Unmodified	1276.6737	0.67371041	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	3	1.41	1	3	1	1	2	19.945	19.945	2	7.0164E-13	8521	DP1061-11	130.66	97.278			0.88766	0.8945	3.9128	4	0	Median	194630000	100200000	94433000	581	287;26	545	1112;1113;1114;1115;1116;1117;1118;1119	2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598;2599	2583		20	9606
FVYVWDTTSR	0	1	Unmodified	1272.6139	0.61388734	387	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	4	0				1		19.622	19.622	2	0.011179	9763	DP1061-14	121.05	77.966			NaN	NaN	NaN	0	0	Median	4034900	0	4034900	582	387	546	1120	2600;2601	2601		2	9606
FYDDAIVSQK	1	0	Unmodified	1184.5714	0.57135383	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.671	16.671	2	0.022645	5205	DP1061-11	81.972	41.703			NaN	NaN	NaN	0	0	Median	2399800	0	2399800	583	48	547	1121	2602	2602		1	9606
GAEAANVTGPGGVPVQGSK	1	0	Unmodified	1694.8588	0.85876208	250	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	3.33	0.471			2	1		14.936	14.936	2	0.00030395	5318	DP1061-13	104.09	67.563			NaN	NaN	NaN	0	0	Median	0	0	0	584	250	548	1122;1123;1124	2603;2604;2605	2604		3	9606
GAEIIVCTPGR	0	1	Unmodified	1171.6019	0.60194245	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				16.276	16.276	2	0.0083271	5526	DP1061-12	88.681	56.726			NaN	NaN	NaN	0	0	Median	14523000	0	14523000	585	352	549	1125	2606	2606		1	9606
GAEYVSAR	0	1	Unmodified	851.41373	0.41373097	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				12.511	12.511	2	0.015831	2273	DP1061-12	117.93	66.968			NaN	NaN	NaN	0	0	Median	99777000	0	99777000	586	46	550	1126	2607;2608	2608		2	9606
GAFGKPQGTVAR	1	1	Unmodified	1187.6411	0.64110515	126	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	1	5	0					1	12.507	12.507	3	0.00039585	2847	DP1061-15	108.98	59.795			NaN	NaN	NaN	0	0	Median	17930000	0	17930000	587	126	551	1127	2609;2610	2609		2	9606
GAFSPFGNIIDLSMDPPR	0	1	Oxidation (M)	1948.9353	0.93529784	105	P18615	NELFE	Negative elongation factor E	yes	yes	0	1	0	3	0			1			22.895	22.895	2	0.024383	14604	DP1061-13	92.063	61.513			NaN	NaN	NaN	0	0	Median	5210500	0	5210500	588	105	552	1128	2611;2612	2611	145	2	9606
GAHYCVPCYENK	1	0	Unmodified	1496.6177	0.61766887	303	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		14.557	14.557	3	0.027087	4833	DP1061-14	47.288	42.009			0.85556	0.81716	NaN	1	0	Median	7041200	3565700	3475500	589	303	553	1129	2613	2613		1	9606
GANAVGYTNYPDNVVFK	1	0	Unmodified	1827.8792	0.87916317	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.5	1	6	1			19.302	19.302	2	2.3855E-43	7568	DP1061-12	163.45	163.45			0.84851	0.8843	4.7345	3	0	Plateau	249260000	131290000	117970000	590	89	554	1130;1131;1132;1133;1134;1135;1136;1137	2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635	2620		22	9606
GASQAGMLAPGTR	0	1	Oxidation (M)	1231.5979	0.5979197	323	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	4	0				1		13.022	13.022	2	0.033473	3244	DP1061-14	82.417	52.099			NaN	NaN	NaN	0	0	Median	3227500	0	3227500	591	323	555	1138	2636	2636	356	1	9606
GASQAGMTGYGMPR	0	1	2 Oxidation (M)	1414.5969	0.59693343	144	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	2	0	5	0					1	12.619	12.619	2	4.9529E-06	2942	DP1061-15	123.62	100.25			NaN	NaN	NaN	0	0	Median	7007100	0	7007100	592	144	556	1139	2637;2638	2637	177;178	2	9606
GASQAGMTGYGMPR	0	1	Oxidation (M)	1398.602	0.6020188	144	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	1	0	5	0					1	14.079	14.079	2	0.0089808	4335	DP1061-15	93.561	73.257			NaN	NaN	NaN	0	0	Median	4967100	0	4967100	593	144	556	1140	2639	2639	177;178	1	9606
GAVEIIFK	1	0	Unmodified	875.51165	0.5116541	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.282	18.282	2	0.016759	8779	DP1061-13	86.472	8.7316			0.95027	0.97859	NaN	1	0	Median	163260000	83766000	79490000	594	68	557	1141	2640;2641;2642	2641		3	9606
GAWSNVLR	0	1	Unmodified	901.477	0.47699993	66;94;93	P05141;P12235;P12236	SLC25A5;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		17.318	17.318	2	0.003324	7350	DP1061-14	100.07	51.306			1.3813	1.4114	NaN	1	0	Median	24379000	9858800	14520000	595	66;93;94	558	1142	2643;2644;2645	2645		3	9606
GCEVVVSGK	1	0	Unmodified	933.45897	0.45896661	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		12.508	12.508	2	0.005483	2677	DP1061-14	93.429	30.77			1.6841	1.6085	NaN	1	0	Median	22720000	9382700	13337000	596	117	559	1143	2646;2647;2648	2647		3	9606
GCTATLGNFAK	1	0	Unmodified	1138.5441	0.54409322	97	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		15.731	15.731	2	0.00026591	5714	DP1061-14	99.802	99.802			2.0399	1.9483	NaN	1	0	Median	14360000	5453500	8906400	597	97	560	1144	2649;2650	2650		2	9606
GDADQASNILASFGLSAR	0	1	Unmodified	1791.8751	0.87514042	160	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				22.806	22.806	2	0.0025466	12311	DP1061-12	100.42	46.853			NaN	NaN	NaN	0	0	Median	7574900	0	7574900	598	160	561	1145	2651;2652	2652		2	9606
GDEELDSLIK	1	0	Unmodified	1117.5503	0.55028404	83	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	18.248	18.248	2	0.011326	8417	DP1061-15	97.635	50.641			NaN	NaN	NaN	0	0	Median	3145800	0	3145800	599	83	562	1146	2653;2654	2653		2	9606
GDGPICLVLAPTR	0	1	Unmodified	1367.7231	0.72312022	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			19.817	19.817	2	0.0079392	10768	DP1061-13	86.313	56.058			NaN	NaN	NaN	0	0	Median	7969100	0	7969100	600	102	563	1147	2655	2655		1	9606
GDHAWSFLK	1	0	Acetyl (Protein N-term)	1101.5243	0.52434406	93	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	1	0	0	4	0				2		19.861	19.861	2	0.0071443	10034	DP1061-14	111.95	51.187			NaN	NaN	NaN	0	0	Median	2296600	0	2296600	601	93	564	1148;1149	2656;2657	2657		2	9606
GDSVIVVLR	0	1	Unmodified	956.56548	0.56548059	223	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	17.578	17.578	2	0.025185	7696	DP1061-15	73.26	40.905			3.5567	3.3407	NaN	1	0	Median	16598000	4220000	12378000	602	223	565	1150	2658;2659	2658		2	9606
GDTPGHATPGHGGATSSAR	0	1	Unmodified	1732.7877	0.7877224	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2.5	0.5		2	2			12.398	12.398	3;4	1.0504E-17	2072	DP1061-12	117.78	103.7			16.094	17.445	NaN	1	0	Median	159760000	6111800	153650000	603	46	566	1151;1152;1153;1154	2660;2661;2662;2663;2664;2665;2666	2660		7	9606
GDTSEDASIHR	0	1	Acetyl (Protein N-term)	1228.532	0.53200821	377	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	1	0	0	2	0		1				13.338	13.338	2	0.028935	2998	DP1061-12	71.349	38.509			NaN	NaN	NaN	0	0	Median	0	0	0	604	377	567	1155	2667	2667		1	9606
GEDFYCVTCHETK	1	0	Unmodified	1644.6548	0.65484224	302	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		15.319	15.319	3	0.036276	5492	DP1061-14	62.298	40.903			NaN	NaN	NaN	0	0	Median	0	0	0	605	302	568	1156	2668	2668		1	9606
GEENLMDAQVK	1	0	Oxidation (M)	1248.5656	0.56561652	183	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	3	0			1			13.656	13.656	2	0.015517	3842	DP1061-13	91.867	49.676			NaN	NaN	NaN	0	0	Median	5041300	0	5041300	606	183	569	1157	2669	2669	195	1	9606
GEKGDTDIMSDLFGLHPKK	3	0	Oxidation (M)	2103.0307	0.030654786	322	Q15413	RYR3	Ryanodine receptor 3	yes	yes	0	1	2	5	0					1	25.277	25.277	2	0.0045133	15281	DP1061-15	98.156	9.4758			NaN	NaN	NaN	0	0	Median	14548000	14548000	0	607	322	570	1158	2670	2670	354	1	9606
GFAFVQYVNER	0	1	Unmodified	1328.6513	0.65133548	79	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		19.702	19.702	2	0.00028019	9843	DP1061-14	99.653	74.877			1.9345	1.9765	NaN	1	0	Median	13131000	3990600	9139900	608	79	571	1159	2671;2672;2673	2673		3	9606
GFAFVTFDDHDSVDK	1	0	Unmodified	1698.7526	0.75256567	82	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		19.307	19.307	3	0.011935	9640	DP1061-14	82.483	62.956			NaN	NaN	NaN	0	0	Median	5821900	0	5821900	609	82	572	1160	2674	2674		1	9606
GFDTSSSSSNSAASSSFK	1	0	Unmodified	1752.7439	0.74385148	176	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	2.5	0.5		1	1			15.175	15.175	2	0.0021768	4366	DP1061-12	101.2	67.661			NaN	NaN	NaN	0	0	Median	4985000	0	4985000	610	176	573	1161;1162	2675;2676	2675		2	9606
GFGFVCFSSPEEATK	1	0	Unmodified	1661.7396	0.73955814	91	P11940;Q9H361;Q13310;Q4VXU2	PABPC1;PABPC3;PABPC4;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1-like	yes	no	0	0	0	3	0			3			20.408	20.408	2	0.00081124	11585	DP1061-13	108.35	68.43			NaN	NaN	NaN	0	0	Median	0	0	0	611	91	574	1163;1164;1165	2677;2678;2679	2679		3	9606
GFGFVTYATVEEVDAAMNAR	0	1	Oxidation (M)	2162.9943	0.99426928	82	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	0	4	0				2		22.012	22.012	2	0.00088642	12279	DP1061-14	110.51	74.746			NaN	NaN	NaN	0	0	Median	4116300	0	4116300	612	82	575	1166;1167	2680;2681;2682;2683	2682	106	4	9606
GFSGGMKDMYDQVLK	2	0	2 Oxidation (M)	1706.7644	0.76439269	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	2	1	1.33	0.471	2	1				15.708	15.708	2;3	3.8102E-10	4402	DP1061-11	112.94	93.806			0.95476	1.1097	8.5309	3	0	Plateau	147990000	75195000	72797000	613	287;26	576	1168;1169;1170	2684;2685;2686;2687;2688;2689;2690;2691;2692;2693	2691	17;21	10	9606
GFSGGMKDMYDQVLK	2	0	Oxidation (M)	1690.7695	0.76947806	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	1	1	0	2					16.918	16.918	2;3	0.0021844	5474	DP1061-11	63.727	63.727			0.88909	1.0651	NaN	1	0	Median	13288000	6681800	6605900	614	287;26	576	1171;1172	2694;2695;2696;2697	2695	17;21	4	9606
GFSLEELR	0	1	Unmodified	949.4869	0.48689592	124	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4	0				1		18.813	18.813	2	0.001323	8877	DP1061-14	102.71	66.528			1.8041	1.8434	NaN	1	0	Median	6240400	2203300	4037100	615	124	577	1173	2698;2699;2700	2698		3	9606
GFSSGSAVVSGGSR	0	1	Unmodified	1253.6	0.60002819	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	2.5	1.12	1	1	1	1		14.354	14.354	2	1.289E-06	3768	DP1061-12	123.62	86.459		+	NaN	NaN	NaN	0	0	Median	32798000	32798000	0	616	17	578	1174;1175;1176;1177	2701;2702;2703;2704;2705;2706;2707	2703		7	9606
GFVDDIIQPSSTR	0	1	Unmodified	1433.7151	0.71505795	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.27	0.617			9	1	1	26.714	26.714	2	5.255E-42	9875	DP1061-13	172.56	133.81			0.97655	0.98681	14.362	8	0	Median	352960000	170340000	182620000	617	68	579	1178;1179;1180;1181;1182;1183;1184;1185;1186;1187;1188	2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727;2728;2729;2730;2731;2732;2733;2734;2735;2736;2737	2711		29	9606
GGAEQFMEETER	0	1	Oxidation (M)	1398.5722	0.57215846	398	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	3	0			1			14.502	14.502	2	0.00079498	5006	DP1061-13	101.3	76.457			NaN	NaN	NaN	0	0	Median	5314900	0	5314900	618	398	580	1189	2738	2738	418	1	9606
GGDDLGTEIANTLYR	0	1	Unmodified	1593.7635	0.76346471	315	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				1		20.905	20.905	2	0.0049729	11131	DP1061-14	96.334	62.448			NaN	NaN	NaN	0	0	Median	4317000	0	4317000	619	315	581	1190	2739;2740	2740		2	9606
GGDSIGETPTPGASK	1	0	Unmodified	1372.647	0.64703797	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2.5	0.5		1	1			13.816	13.816	2	0.0021438	3887	DP1061-13	100.04	55.66			NaN	NaN	NaN	0	0	Median	19575000	0	19575000	620	46	582	1191;1192	2741;2742	2742		2	9606
GGDSIGETPTPGASKR	1	1	Unmodified	1528.7481	0.74814899	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				13.08	13.08	3	0.009391	2809	DP1061-12	78.902	36.117			NaN	NaN	NaN	0	0	Median	0	0	0	621	46	583	1193	2743	2743		1	9606
GGFSFGNVEPASLPSASVFVLGR	0	1	Unmodified	2294.1695	0.16953153	176	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	2	0		1				23.573	23.573	2	1.1752E-27	13273	DP1061-12	138.01	138.01			0.54161	0.58709	NaN	1	0	Median	9241200	6223400	3017800	622	176	584	1194	2744;2745	2745		2	9606
GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR	0	1	Unmodified	2398.0111	0.011133407	17	CON__P35908v2;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	5	0					1	20.186	20.186	2	6.4414E-31	10531	DP1061-15	163.45	131.79		+	NaN	NaN	NaN	0	0	Median	4397600	4397600	0	623	17	585	1195	2746;2747;2748	2748		3	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	0	1	Unmodified	2382.9446	0.94456998	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.29	1	1	2	1	1	14.227	14.227	2	9.4323E-79	4412	DP1061-13	294.85	229.2		+	NaN	NaN	NaN	0	0	Median	29828000	29828000	0	624	60	586	1196;1197;1198;1199;1200;1201	2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765;2766	2757		18	9606
GGGGNFGPGPGSNFR	0	1	Unmodified	1376.6222	0.62216062	114	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		15.931	15.931	2	2.452E-08	5932	DP1061-14	129.82	97.884			NaN	NaN	NaN	0	0	Median	6128700	0	6128700	625	114	587	1202	2767;2768	2768		2	9606
GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR	0	1	Unmodified	2704.1538	0.15383448	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0			1			20.278	20.278	2	2.432E-05	11400	DP1061-13	77.66	59.522		+	NaN	NaN	NaN	0	0	Median	0	0	0	626	16	588	1203	2769	2769		1	9606
GGGPAGAGGEAPAALR	0	1	Unmodified	1307.6582	0.65821178	341	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		14.592	14.592	2	0.030723	4728	DP1061-14	80.871	37.563			NaN	NaN	NaN	0	0	Median	3840000	0	3840000	627	341	589	1204	2770	2770		1	9606
GGKPEPPAMPQPVPTA	1	0	Oxidation (M)	1588.7919	0.79192806	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	1	4	0				1		14.851	14.851	2	0.00077892	5054	DP1061-14	73.082	56.989			0.87085	0.83176	NaN	1	0	Median	5031400	2130800	2900600	628	117	590	1205	2771;2772	2771	160	2	9606
GGSGGGGSISGGGYGSGGGSGGR	0	1	Unmodified	1740.7412	0.74116614	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.67	1.25	1		1	1		12.929	12.929	2	2.8759E-18	2465	DP1061-11	188	161.88		+	NaN	NaN	NaN	0	0	Median	5333500	5333500	0	629	17	591	1206;1207;1208	2773;2774;2775;2776;2777;2778	2774		6	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	1	0	Unmodified	3222.2743	0.27429656	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3.2	1.6	1	1	1		2	14.309	14.309	3	3.0835E-82	4525	DP1061-13	196.21	196.21		+	NaN	NaN	NaN	0	0	Median	23284000	23284000	0	630	16	592	1209;1210;1211;1212;1213	2779;2780;2781;2782;2783;2784;2785;2786;2787;2788;2789;2790;2791	2786		13	9606
GGSGGSYGGGGSGGGYGGGSGSR	0	1	Unmodified	1790.7204	0.72043069	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.83	1.34	1	2	1	1	1	12.662	12.662	2	6.104E-193	2764	DP1061-13	308.03	142.24		+	NaN	NaN	NaN	0	0	Median	30937000	30937000	0	631	16	593	1214;1215;1216;1217;1218;1219	2792;2793;2794;2795;2796;2797;2798;2799;2800;2801	2797		10	9606
GGSISGGGYGSGGGK	1	0	Unmodified	1196.5422	0.54217896	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.67	1.7	1	1			1	12.491	12.491	2	0.00063066	2814	DP1061-15	108.98	53.48		+	NaN	NaN	NaN	0	0	Median	21248000	21248000	0	632	17	594	1220;1221;1222	2802;2803;2804;2805	2805		4	9606
GGSWVVIDSSINPR	0	1	Unmodified	1485.7576	0.75759147	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.4	1.02	1	2	1	1		19.444	19.444	2	2.9781E-48	7999	DP1061-11	172.56	125.37			0.89531	0.93723	6.036	4	0	Median	139790000	72839000	66952000	633	287	595	1223;1224;1225;1226;1227	2806;2807;2808;2809;2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822	2809		17	9606
GHENVEAAQAEYIEK	1	0	Unmodified	1686.7849	0.78492843	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.9	0.7			3	5	2	14.844	14.844	2;3	1.7067E-91	4878	DP1061-13	220.97	193.06			0.92177	0.88039	17.944	5	0	Median	411820000	197750000	214070000	634	68	596	1228;1229;1230;1231;1232;1233;1234;1235;1236;1237	2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841	2823		19	9606
GHLDAELDAYMAQTDPETND	0	0	Oxidation (M)	2220.9117	0.91172144	453	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		18.47	18.47	2	4.3508000000000005E-30	8543	DP1061-14	175.21	157.12			NaN	NaN	NaN	0	0	Median	0	0	0	635	453	597	1238	2842;2843;2844	2842	450	3	9606
GHLENNPALEK	1	0	Unmodified	1220.6149	0.61494998	71	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				2		12.525	12.525	2;3	2.4525E-37	2676	DP1061-14	178.46	87.195			1.5651	1.4948	NaN	1	0	Median	29476000	10071000	19405000	636	71	598	1239;1240	2845;2846;2847;2848;2849;2850	2846		6	9606
GHNTNVGAIVFHPK	1	0	Unmodified	1489.779	0.77899561	34	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			14.642	14.642	3	0.038281	4953	DP1061-13	68.262	33.301			NaN	NaN	NaN	0	0	Median	11800000	0	11800000	637	34	599	1241	2851	2851		1	9606
GHQQLYWSHPR	0	1	Unmodified	1407.6796	0.67961592	218	P62273	RPS29	40S ribosomal protein S29	yes	yes	0	0	0	5	0					2	13.827	13.827	3	0.00023926	4123	DP1061-15	91.313	67.602			0.6394	0.60056	NaN	1	0	Median	16192000	10870000	5321900	638	218	600	1242;1243	2852;2853;2854	2853		3	9606
GHYTEGAELVDSVLDVVR	0	1	Unmodified	1957.9745	0.97452012	253;77;305;297	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3	0			2			21.843	21.843	2;3	3.6347E-17	13332	DP1061-13	121.45	121.45			1.4478	1.4847	NaN	1	0	Median	14260000	5148000	9111500	639	77;253;305;297	601	1244;1245	2855;2856;2857;2858	2856		4	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	3 Oxidation (M)	2225.0279	0.027894369	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	3	0	3	0			1			18.979	18.979	2	4.2945999999999995E-38	9711	DP1061-13	143.93	120.94			0.92788	0.95554	NaN	1	0	Median	23196000	11379000	11817000	640	188	602	1246	2859;2860;2861;2862	2862	204;205;206	4	9606
GILQELFLNK	1	0	Unmodified	1173.6758	0.67575932	394	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				22.803	22.803	2	0.011163	12275	DP1061-12	101.6	46.619			NaN	NaN	NaN	0	0	Median	5479900	0	5479900	641	394	603	1247	2863;2864	2864		2	9606
GINSSNVENQLQATQAAR	0	1	Unmodified	1899.9399	0.93986594	189	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			2			16.66	16.66	2	1.1715E-29	6973	DP1061-13	170.79	120.44			NaN	NaN	NaN	0	0	Median	0	0	0	642	189	604	1248;1249	2865;2866	2865		2	9606
GIPAPEEERTR	0	2	Unmodified	1253.6364	0.6364137	56	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	1	4	0				1		12.838	12.838	3	0.00026547	3034	DP1061-14	91.658	57.698			1.4678	1.3998	NaN	1	0	Median	3407500	1375600	2031900	643	56	605	1250	2867;2868	2867		2	9606
GIPHLVTHDAR	0	1	Unmodified	1214.652	0.65200419	227;113	P22090;P62701;Q8TD47	RPS4Y1;RPS4X;RPS4Y2	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	no	no	0	0	0	4	0				1		13.466	13.466	3	0.043418	3608	DP1061-14	78.653	44.12			NaN	NaN	NaN	0	0	Median	6799700	6799700	0	644	113;227	606	1251	2869	2869		1	9606
GISSSNEGVEEPSK	1	0	Unmodified	1418.6525	0.65251728	426	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	3	0			1			13.158	13.158	2	1.8494E-07	3377	DP1061-13	135.1	101.21			NaN	NaN	NaN	0	0	Median	0	0	0	645	426	607	1252	2870	2870		1	9606
GLAFELVYSPAIK	1	0	Unmodified	1406.781	0.78095267	257	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	4	0				1		21.509	21.509	2	0.0010538	11794	DP1061-14	98.943	67.449			NaN	NaN	NaN	0	0	Median	2825800	0	2825800	646	257	608	1253	2871;2872;2873	2873		3	9606
GLAPVQAYLHIPDIIK	1	0	Unmodified	1747.0032	0.0032414695	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.43	0.904		11	1	1	1	26.378	26.378	2;3	4.831E-15	18398	DP1061-12	122.42	95.67			0.76007	0.78679	13.325	12	0	Median	299970000	168440000	131520000	647	89	609	1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267	2874;2875;2876;2877;2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911	2898		38	9606
GLCAIAQAESLR	0	1	Unmodified	1287.6605	0.66051996	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		17.858	17.858	2	1.0733E-10	7881	DP1061-14	115.78	75.43			1.4386	1.4699	NaN	1	0	Median	19348000	6771400	12576000	648	117	610	1268	2912;2913	2913		2	9606
GLCGAIHSSIAK	1	0	Unmodified	1212.6285	0.62849155	140	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		14.386	14.386	2	0.010095	4613	DP1061-14	85.355	57.15			NaN	NaN	NaN	0	0	Median	2356900	0	2356900	649	140	611	1269	2914;2915	2915		2	9606
GLDEDETNFLDEVSR	0	1	Unmodified	1737.7693	0.76933795	408	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	4	0				1		20.872	20.872	2	6.1785E-66	11037	DP1061-14	240.8	203.1			NaN	NaN	NaN	0	0	Median	6714700	0	6714700	650	408	612	1270	2916;2917;2918	2917		3	9606
GLIVFENESYVLEPMK	1	0	Oxidation (M)	1882.9387	0.93865188	36	O43184	ADAM12	Disintegrin and metalloproteinase domain-containing protein 12	yes	yes	0	1	0	2	0		1				23.566	23.566	2	0.038037	13350	DP1061-12	47.971	24.503			0.9483	0.99638	NaN	1	0	Median	54749000	27565000	27184000	651	36	613	1271	2919	2919	36	1	9606
GLLGLPEEETELDNLTEFNTAHNKR	1	1	Unmodified	2839.3988	0.39881578	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	3	0			1			20.504	20.504	3	0.00051877	11704	DP1061-13	92.01	67.613			NaN	NaN	NaN	0	0	Median	7939000	0	7939000	652	285	614	1272	2920;2921	2921		2	9606
GLLNGASQK	1	0	Unmodified	886.48723	0.48723027	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					13.785	13.785	2	0.021279	2983	DP1061-11	95.531	11.916			NaN	NaN	NaN	0	0	Median	3980200	0	3980200	653	321	615	1273	2922	2922		1	9606
GLSEDTTEETLKESFDGSVR	1	1	Unmodified	2199.0179	0.017901073	108	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				18.675	18.675	3	0.013645	7543	DP1061-12	89.846	51.585			NaN	NaN	NaN	0	0	Median	6870400	0	6870400	654	108	616	1274	2923;2924	2924		2	9606
GLSQSALPYR	0	1	Unmodified	1090.5771	0.57710791	219	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	15.995	15.995	2	0.011891	6121	DP1061-15	94.114	45.553			NaN	NaN	NaN	0	0	Median	4543300	4543300	0	655	219	617	1275	2925	2925		1	9606
GLSSLLYGSIPK	1	0	Unmodified	1233.6969	0.69688869	194	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				3		20.559	20.559	2	0.0002422	10731	DP1061-14	91.584	91.584			1.4014	1.3385	NaN	1	0	Median	7972600	4570000	3402600	656	194	618	1276;1277;1278	2926;2927;2928;2929	2926		4	9606
GLVLDHGAR	0	1	Unmodified	936.51411	0.51411372	150	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			13.205	13.205	2	0.015881	3425	DP1061-13	121.99	63.008			NaN	NaN	NaN	0	0	Median	9600400	0	9600400	657	150	619	1279	2930;2931	2930		2	9606
GLYAAFDCTATMK	1	0	Oxidation (M)	1463.6425	0.64248664	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			17.863	17.863	2	5.2347E-09	6723	DP1061-12	115.18	106.22			0.91799	0.9549	2.2689	2	0	Median	168450000	82656000	85798000	658	89	620	1280;1281	2932;2933;2934;2935;2936;2937;2938;2939	2932	125	8	9606
GLYAAFDCTATMK	1	0	Unmodified	1447.6476	0.64757201	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				18.93	18.93	2	1.0742E-07	7716	DP1061-12	112.13	112.13			0.92926	0.97638	NaN	1	0	Median	43774000	22066000	21709000	659	89	620	1282	2940;2941;2942;2943	2942		4	9606
GMSLNLEPDNVGVVVFGNDK	1	0	Oxidation (M)	2119.0256	0.025569409	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			20.99	20.99	2	1.032E-13	12300	DP1061-13	114.69	91.599			0.81779	0.84216	NaN	1	0	Median	15761000	8043000	7718200	660	122	621	1283	2944;2945;2946	2944	165	3	9606
GNAGQSNYGFANSAMER	0	1	Unmodified	1772.7536	0.75364508	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.575	16.575	2	0.021539	5157	DP1061-11	76.357	55.128			NaN	NaN	NaN	0	0	Median	0	0	0	661	171	622	1284	2947	2947		1	9606
GNFGGSFAGSFGGAGGHAPGVAR	0	1	Unmodified	2033.9456	0.94562002	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			3			17.549	17.549	2;3	2.2996E-39	8029	DP1061-13	155.24	155.24			1.0795	1.1028	NaN	1	0	Median	45310000	22391000	22919000	662	188	623	1285;1286;1287	2948;2949;2950;2951;2952;2953	2951		6	9606
GNIPTLNR	0	1	Unmodified	883.48756	0.48756462	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				15.01	15.01	2	0.0022425	3798	DP1061-11	101.28	52.723			0.86464	0.89124	5.9063	2	0	Median	407210000	219150000	188060000	663	287	624	1288;1289	2954;2955;2956;2957;2958;2959;2960;2961	2954		8	9606
GNLANVIR	0	1	Unmodified	855.49265	0.49265	66;94;93	P05141;Q9H0C2;P12235;P12236	SLC25A5;SLC25A31;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		15.276	15.276	2	0.029974	5433	DP1061-14	95.793	28.994			NaN	NaN	NaN	0	0	Median	39290000	0	39290000	664	66;93;94	625	1290	2962;2963	2963		2	9606
GNSIIMLEALERV	0	1	Oxidation (M)	1459.7705	0.77046434	2	P62308;A8MWD9	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	yes	no	0	1	1	5	0					1	20.702	20.702	2	0.0018106	11112	DP1061-15	89.403	63.782			NaN	NaN	NaN	0	0	Median	4170700	0	4170700	665	2	626	1291	2964;2965	2964	0	2	9606
GNVDEELSKK	2	0	Unmodified	1117.5615	0.56151742	155	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	0	1	4	0				1		12.415	12.415	2	0.022209	2589	DP1061-14	106.6	71.243			NaN	NaN	NaN	0	0	Median	7930500	0	7930500	666	155	627	1292	2966;2967	2967		2	9606
GPASQFYITPSTSLSPR	0	1	Unmodified	1807.9105	0.9104633	174	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1	0	1					19.25	19.25	2	0.0073381	7790	DP1061-11	88.021	19.364			NaN	NaN	NaN	0	0	Median	0	0	0	667	174	628	1293	2968	2968		1	9606
GPAYGLSR	0	1	Unmodified	819.4239	0.42390173	144	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	13.957	13.957	2	0.01904	4226	DP1061-15	111.04	73.942			NaN	NaN	NaN	0	0	Median	26860000	0	26860000	668	144	629	1294	2969;2970	2970		2	9606
GPLQSVQVFGR	0	1	Unmodified	1186.6459	0.64585618	214	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	18.338	18.338	2	3.3165999999999997E-19	8416	DP1061-15	146.69	146.69			1.2402	1.1649	NaN	1	0	Median	16944000	6363300	10581000	669	214	630	1295	2971;2972;2973;2974	2972		4	9606
GPPPPPGDENREMDDPSVGPK	1	1	Oxidation (M)	2202.9852	0.98516116	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	1	2.5	0.5		1	1			13.999	13.999	3	0.010153	4105	DP1061-13	72.932	39.308			NaN	NaN	NaN	0	0	Median	12898000	0	12898000	670	296	631	1296;1297	2975;2976;2977	2977	325	3	9606
GPPQEEEEEEDEEEEATKEDAEAPGIR	1	1	Unmodified	3041.2745	0.27452228	186	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	1	4	0				1		16.779	16.779	3	0.00010763	6810	DP1061-14	94.019	74.282			NaN	NaN	NaN	0	0	Median	1114300	0	1114300	671	186	632	1298	2978	2978		1	9606
GPQLVCTGSDDGTVK	1	0	Unmodified	1532.7141	0.71407167	387	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	4	0				2		14.962	14.962	2	0.0021187	5243	DP1061-14	100.93	43.912			NaN	NaN	NaN	0	0	Median	0	0	0	672	387	633	1299;1300	2979;2980	2980		2	9606
GPSSVEDIK	1	0	Unmodified	930.46583	0.46582612	74	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		13.204	13.204	2	0.019465	3421	DP1061-14	101.54	27.127			NaN	NaN	NaN	0	0	Median	19900000	0	19900000	673	74	634	1301	2981;2982	2982		2	9606
GPTSTSIDNIDGTPVRDER	0	2	Unmodified	2028.9712	0.97122565	344	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	1	2	0		1				15.637	15.637	3	0.029673	4719	DP1061-12	82.259	37.166			NaN	NaN	NaN	0	0	Median	8902700	0	8902700	674	344	635	1302	2983	2983		1	9606
GPYESGSGHSSGLGHR	0	1	Unmodified	1583.7077	0.70768116	20	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1	0	1					12.407	12.407	3	0.0033056	1877	DP1061-11	97.203	33.795		+	NaN	NaN	NaN	0	0	Median	5553800	5553800	0	675	20	636	1303	2984;2985	2985		2	9606
GQIGAPMPGK	1	0	Oxidation (M)	970.4906	0.49060109	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3.33	1.25		1	1		1	12.872	12.872	2	0.0060175	3068	DP1061-15	70.919	56.916			0.63863	0.75834	17.954	3	0	Plateau	117640000	68588000	49053000	676	89	637	1304;1305;1306	2986;2987;2988;2989;2990;2991;2992;2993	2993	126	8	9606
GQNLLQTQDHAK	1	0	Unmodified	1351.6844	0.68442653	161	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				13.039	13.039	2	0.0060898	2775	DP1061-12	89.029	25.602			NaN	NaN	NaN	0	0	Median	0	0	0	677	161	638	1307	2994	2994		1	9606
GQNPNATFGEVSK	1	0	Unmodified	1347.6419	0.64189301	31	O94900;O15405;O94842	TOX;TOX3;TOX4	Thymocyte selection-associated high mobility group box protein TOX;TOX high mobility group box family member 3;TOX high mobility group box family member 4	yes	no	0	0	0	3	0			2			14.658	14.658	2	0.0076644	5030	DP1061-13	88.056	32.489			NaN	NaN	NaN	0	0	Median	0	0	0	678	31	639	1308;1309	2995;2996	2996		2	9606
GQVGGDVNVEMDAAPGVDLSR	0	1	Oxidation (M)	2100.9746	0.97459647	6	P02533;CON__P02533;CON__Q6IFX2	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	1	0	2.5	1.5	1			1		17.699	17.699	2	0.0039527	6253	DP1061-11	89.866	59.862		+	NaN	NaN	NaN	0	0	Median	0	0	0	679	6	640	1310;1311	2997;2998	2997	2	2	9606
GQVLPAHTLLNTVDVELIYEGVK	1	0	Unmodified	2507.3635	0.36353989	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				22.311	22.311	3	1.2107E-13	11680	DP1061-12	113.42	113.42			0.94306	0.99087	NaN	1	0	Median	18253000	8815100	9437800	680	287	641	1312;1313	2999;3000;3001;3002;3003;3004	3003		6	9606
GSAITGPVAK	1	0	Unmodified	899.50763	0.50763136	232	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	12.791	12.791	2	0.052463	3109	DP1061-15	59.35	24.526			1.2762	1.14	NaN	1	0	Median	14572000	6631400	7940100	681	232	642	1314	3005	3005		1	9606
GSLGGGFSSGGFSGGSFSR	0	1	Unmodified	1706.7649	0.76486169	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.5	1.12		1	1	1	1	18.697	18.697	2	7.641899999999999E-19	8756	DP1061-15	160.84	140.42		+	NaN	NaN	NaN	0	0	Median	45650000	45650000	0	682	15	643	1315;1316;1317;1318	3006;3007;3008;3009;3010;3011	3011		6	9606
GSSASLVLKR	1	1	Unmodified	1016.5978	0.59784335	265	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	4	0				1		13.182	13.182	2	0.02177	3446	DP1061-14	68.371	42.563			1.6265	1.6406	NaN	1	0	Median	3028900	1067000	1962000	683	265	644	1319	3012	3012		1	9606
GSSGGGCFGGSSGGYGGLGGFGGGSFR	0	1	Unmodified	2341.9771	0.97705609	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	0			2			19.809	19.809	2	2.4928E-09	10808	DP1061-13	120.92	96.73		+	NaN	NaN	NaN	0	0	Median	5051600	5051600	0	684	15	645	1320;1321	3013;3014	3013		2	9606
GSSSGGGYSSGSSSYGSGGR	0	1	Unmodified	1739.6983	0.69829827	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.41	1	1	1	1	1	12.728	12.728	2	5.695E-11	2848	DP1061-13	139.21	124.52		+	NaN	NaN	NaN	0	0	Median	12982000	12982000	0	685	17	646	1322;1323;1324;1325;1326	3015;3016;3017;3018;3019;3020;3021;3022;3023;3024;3025	3022		11	9606
GSVLEPEGTVEIK	1	0	Unmodified	1356.7137	0.71366097	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	1.09	5	1	1	1		21.473	21.473	2	8.4877E-17	5703	DP1061-11	136.96	136.96			0.78988	0.83567	10.028	8	0	Median	511630000	273550000	238080000	686	287	647	1327;1328;1329;1330;1331;1332;1333;1334	3026;3027;3028;3029;3030;3031;3032;3033;3034;3035;3036;3037;3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052	3027		27	9606
GSYGDLGGPIITTQVTIPK	1	0	Unmodified	1916.0255	0.025493054	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			20.269	20.269	2	2.288E-07	11431	DP1061-13	127.07	81.993			NaN	NaN	NaN	0	0	Median	13022000	0	13022000	687	209	648	1335	3053;3054	3053		2	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	0	1	Unmodified	3311.3008	0.30084566	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.83	1.34	1	2	1	1	1	14.632	14.632	3	1.1253E-67	4865	DP1061-13	186.76	155.16		+	NaN	NaN	NaN	0	0	Median	22072000	22072000	0	688	60	649	1336;1337;1338;1339;1340;1341	3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077	3067		23	9606
GSYSCEVTHEGSTVTK	1	0	Unmodified	1740.7625	0.76247843	18	CON__Q1RMN8			yes	yes	0	0	0	4.5	0.5				1	1	13.365	13.365	3	0.00040913	3687	DP1061-15	110.22	88.376		+	NaN	NaN	NaN	0	0	Median	13607000	13607000	0	689	18	650	1342;1343	3078;3079;3080	3080		3	
GTAYVVYEDIFDAK	1	0	Unmodified	1589.7613	0.76133944	450	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	21.509	21.509	2	0.00031056	11888	DP1061-15	107.34	81.299			NaN	NaN	NaN	0	0	Median	31253000	0	31253000	690	450	651	1344	3081;3082	3082		2	9606
GTDIMYTGTLDCWR	0	1	Oxidation (M)	1703.7283	0.72834153	66	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	0	4	0				1		19.251	19.251	2	0.00031925	9420	DP1061-14	110.93	84.951			NaN	NaN	NaN	0	0	Median	3569100	0	3569100	691	66	652	1345	3083	3083	69	1	9606
GTHFVQLCCQR	0	1	Unmodified	1404.6391	0.63907301	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		14.803	14.803	2;3	2.6787E-13	4954	DP1061-13	149.82	149.82			0.9559	0.97165	2.6694	3	0	Median	249710000	126260000	123450000	692	417	653	1346;1347;1348;1349	3084;3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095	3089		12	9606
GTIEILSDVQLIK	1	0	Unmodified	1427.8235	0.82354577	71	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		21.478	21.478	2	0.044183	11742	DP1061-14	71.03	24.574			NaN	NaN	NaN	0	0	Median	0	0	0	693	71	654	1350	3096	3096		1	9606
GTLDPVEK	1	0	Unmodified	857.44945	0.44944778	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			13.561	13.561	2	0.046998	3679	DP1061-13	67.169	31.969			5.4077	5.5689	NaN	1	0	Median	91380000	16555000	74825000	694	88	655	1351	3097	3097		0	9606
GTPLDTEVPMER	0	1	Oxidation (M)	1359.634	0.63403044	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			15.95	15.95	2	0.00010461	6027	DP1061-13	89.827	68.363			0.77942	0.84487	3.4752	3	0	Plateau	306840000	167720000	139120000	695	89	656	1352;1353;1354	3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111	3108	127	14	9606
GTPLDTEVPMER	0	1	Unmodified	1343.6391	0.63911582	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				17.706	17.706	2	4.6563E-23	5997	DP1061-12	147.4	147.4			0.87259	0.94587	14.95	2	0	Median	107030000	57189000	49840000	696	89	656	1355;1356	3112;3113;3114;3115;3116;3117	3115		6	9606
GTYQGLTATVLK	1	0	Unmodified	1250.6871	0.68705229	194	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		17.643	17.643	2	0.0038482	7677	DP1061-14	77.288	34.205			1.1441	1.0927	NaN	1	0	Median	5809800	2572700	3237100	697	194	657	1357	3118	3118		1	9606
GVDFESSEDDDDDPFMNTSSLRR	0	2	Oxidation (M)	2649.0773	0.077283221	179	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	1	1	5	0					1	44.293	44.293	3	0.049806	23962	DP1061-15	43.164	32.059			NaN	NaN	NaN	0	0	Median	0	0	0	698	179	658	1358	3119	3119		1	9606
GVDLVLNSLAEEK	1	0	Unmodified	1385.7402	0.74021007	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					20.033	20.033	2	0.0079392	8590	DP1061-11	86.313	37.711			NaN	NaN	NaN	0	0	Median	1289000	0	1289000	699	171	659	1359	3120	3120		1	9606
GVEEEEEDGEMRE	0	1	Oxidation (M)	1552.5835	0.58351101	221	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	1	5	0					1	13.288	13.288	2	3.3731E-17	3552	DP1061-15	136.02	136.02			3.4109	3.2037	NaN	1	0	Median	5448100	1325600	4122500	700	221	660	1360	3121;3122;3123;3124	3121	239	4	9606
GVEEEEEDGEMRE	0	1	Unmodified	1536.5886	0.58859639	221	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	0	1	5	0					1	14.433	14.433	2	6.5805E-06	4640	DP1061-15	148.56	99.955			NaN	NaN	NaN	0	0	Median	2618200	0	2618200	701	221	660	1361	3125;3126	3126		2	9606
GVEICIATPGR	0	1	Unmodified	1171.6019	0.60194245	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			17.23	17.23	2	0.0044184	7759	DP1061-13	105.4	71.6			NaN	NaN	NaN	0	0	Median	9196100	0	9196100	702	102	661	1362	3127	3127		1	9606
GVFVQSVLPYFVATK	1	0	Unmodified	1653.913	0.91302948	339	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	4	0				1		22.776	22.776	2	0.00030782	12886	DP1061-14	111.63	84.149			NaN	NaN	NaN	0	0	Median	1410200	0	1410200	703	339	662	1363	3128	3128		1	9606
GVGVALDDPYENYRR	0	2	Unmodified	1722.8325	0.83254733	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	1	5	0					1	17.04	17.04	3	2.251E-06	7121	DP1061-15	121.04	63.239			NaN	NaN	NaN	0	0	Median	3709100	0	3709100	704	361	663	1364	3129;3130	3130		2	9606
GVISDILDWK	1	0	Unmodified	1144.6128	0.61282471	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				22.805	22.805	2	1.5396E-12	12132	DP1061-12	132.76	103.59			0.89949	0.9451	NaN	1	0	Median	34006000	16231000	17775000	705	287	664	1365	3131;3132;3133;3134	3132		4	9606
GVSFTFGAEVVAK	1	0	Unmodified	1310.6871	0.68705229	210;142	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	4	0.816			1	1	1	19.485	19.485	2	0.015409	9694	DP1061-15	82.417	32.376			NaN	NaN	NaN	0	0	Median	12904000	0	12904000	706	142;210	665	1366;1367;1368	3135;3136;3137;3138	3137		4	9606
GVTHNIALLR	0	1	Unmodified	1092.6404	0.64037687	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			2			15.482	15.482	2;3	0.0022337	5693	DP1061-13	92.051	92.051			1.149	1.1703	NaN	1	0	Median	109140000	48170000	60971000	707	67	666	1369;1370	3139;3140;3141;3142;3143	3139		5	9606
GVVDSEDLPLNISR	0	1	Unmodified	1512.7784	0.77838649	78	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	no	no	0	0	0	3	0			1			19.144	19.144	2	0.00014244	9933	DP1061-13	88.187	0			1.5584	1.5965	NaN	1	0	Median	19041000	5741000	13300000	708	78	667	1371	3144	3144		1	9606
GVVMHTFGGYANSK	1	0	Oxidation (M)	1482.6925	0.69254837	350	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		14.436	14.436	3	0.035445	4615	DP1061-14	56.139	23.885			NaN	NaN	NaN	0	0	Median	3473000	0	3473000	709	350	668	1372	3145	3145	369	1	9606
GYSFTTTAER	0	1	Unmodified	1131.5197	0.51965261	199;249	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		15.523	15.523	2	0.032196	5571	DP1061-14	76.679	48.461			NaN	NaN	NaN	0	0	Median	7885600	7885600	0	710	199;249	669	1373	3146	3146		1	9606
GYVKDVDDGLQAAEEVGYPVMIK	2	0	Oxidation (M)	2511.2203	0.22030605	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	1	1				20.505	20.505	3	1.2433E-05	9018	DP1061-11	85.224	85.224			0.81937	0.90704	19.188	2	0	Median	37165000	19856000	17309000	711	287	670	1374;1375	3147;3148;3149;3150;3151;3152;3153;3154	3149	277	8	9606
GYVVPNVDLPPLCSSR	0	1	Unmodified	1771.8927	0.89270474	385	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				2		20.306	20.306	2	0.018685	10502	DP1061-14	79.492	46.493			NaN	NaN	NaN	0	0	Median	0	0	0	712	385	671	1376;1377	3155;3156	3156		2	9606
HDLDLICR	0	1	Unmodified	1040.5073	0.50731378	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0.816			1	1	1	15.644	15.644	2	0.0010468	5922	DP1061-13	149.4	88.719			NaN	NaN	NaN	0	0	Median	270540000	0	270540000	713	142;210;211	672	1378;1379;1380	3157;3158;3159;3160;3161;3162;3163;3164	3157		8	9606
HEHQVMLMR	0	1	2 Oxidation (M)	1211.5539	0.5539464	318	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	2	0	3	0			1			12.421	12.421	3	0.013245	2480	DP1061-13	70.816	41.283			NaN	NaN	NaN	0	0	Median	23190000	0	23190000	714	318	673	1381	3165	3165	339;340	1	9606
HEQGLSTALSVEK	1	0	Unmodified	1397.7151	0.71505795	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	3.5	0.5			1	1		14.913	14.913	2	6.6455E-05	5227	DP1061-13	123.26	61.491			NaN	NaN	NaN	0	0	Median	6069800	0	6069800	715	390	674	1382;1383	3166;3167;3168;3169	3166		4	9606
HGEEVTPEDVLSAAMYPDVFAHFK	1	0	Oxidation (M)	2704.2479	0.24791778	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		8				25.056	25.056	3;4	2.8293999999999998E-28	10794	DP1061-12	133.94	121.63			0.72806	0.76497	8.3997	4	0	Median	166000000	93491000	72511000	716	89	675	1384;1385;1386;1387;1388;1389;1390;1391	3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184;3185;3186;3187;3188;3189	3172	128	20	9606
HGEEVTPEDVLSAAMYPDVFAHFK	1	0	Unmodified	2688.253	0.25300316	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				22.676	22.676	3;4	8.4316E-39	12047	DP1061-12	152.51	152.51			0.79651	0.8369	7.4584	2	0	Median	50023000	26507000	23516000	717	89	675	1392;1393	3190;3191;3192;3193;3194;3195	3193		6	9606
HGGGGGGFGGGGFGSR	0	1	Unmodified	1319.5755	0.57554478	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	5	0					2	13.827	13.827	2;3	0.0074807	4075	DP1061-15	67.846	55.632		+	NaN	NaN	NaN	0	0	Median	32316000	32316000	0	718	17	676	1394;1395	3196;3197	3197		2	9606
HGLEVSEMAVSELPGNPNAVWTVR	0	1	Oxidation (M)	2607.2751	0.27513559	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	2	0		2				20.147	20.147	3	0.0016181	9112	DP1061-12	79.935	55.653			NaN	NaN	NaN	0	0	Median	7119900	0	7119900	719	321	677	1396;1397	3198;3199;3200;3201	3198	345	4	9606
HGNALWLNER	0	1	Unmodified	1208.6051	0.60505399	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			15.902	15.902	2	3.0757E-13	6047	DP1061-13	140.45	103.75			1.0859	1.1061	NaN	1	0	Median	105060000	48807000	56249000	720	67	678	1398	3202;3203;3204;3205	3203		4	9606
HGVVPLATYMR	0	1	Oxidation (M)	1258.6492	0.64922699	164	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	1	0	5	0					1	15.05	15.05	2	0.0043642	5181	DP1061-15	69.825	41.812			1.5205	1.4281	NaN	1	0	Median	7735300	2767300	4968000	721	164	679	1399	3206	3206	190	1	9606
HGYIGEFEIIDDHR	0	1	Unmodified	1699.7954	0.79543354	213	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	17.731	17.731	3	3.023E-09	7886	DP1061-15	104.81	88.226			1.2068	1.1335	NaN	1	0	Median	9367100	4374300	4992900	722	213	680	1400	3207;3208;3209;3210	3209		4	9606
HHIDDLVMHMSQR	0	1	2 Oxidation (M)	1649.7402	0.74024362	120	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	2	0	3	0			1			13.032	13.032	2	0.037044	3246	DP1061-13	61.161	28.431			NaN	NaN	NaN	0	0	Median	0	0	0	723	120	681	1401	3211	3211	162;163	1	9606
HHYEQQQEDLAR	0	1	Unmodified	1552.7019	0.7018675	311	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	0	1.5	0.5	1	1				12.476	12.476	3	0.0018208	2015	DP1061-11	94.122	75.299			NaN	NaN	NaN	0	0	Median	13021000	0	13021000	724	311	682	1402;1403	3212;3213;3214;3215	3212		4	9606
HIANYISGIQTIGHR	0	1	Unmodified	1678.8903	0.89033698	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.8	0.748	2	2	1			16.989	16.989	3	0.00021295	5531	DP1061-11	112.03	91.802			NaN	NaN	NaN	0	0	Median	16750000	0	16750000	725	321	683	1404;1405;1406;1407;1408	3216;3217;3218;3219;3220;3221	3217		6	9606
HIEIQVLGDK	1	0	Unmodified	1150.6346	0.63462279	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		16.197	16.197	2	7.6804E-37	6462	DP1061-13	177.78	120.6			1.0613	1.093	NaN	1	0	Median	207810000	97633000	110170000	726	67	684	1409;1410;1411;1412	3222;3223;3224;3225;3226;3227;3228;3229;3230;3231	3223		10	9606
HIEVQILGDQYGNILHLYER	0	1	Unmodified	2409.2441	0.24409346	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				21.166	21.166	3	2.7262E-61	10414	DP1061-12	169.85	169.85			0.97453	1.0564	NaN	1	0	Median	25953000	14212000	11741000	727	89	685	1413	3232;3233;3234	3233		3	9606
HLCGDTNYAWPTAEIAVMGAK	1	0	Oxidation (M)	2320.0616	0.061637339	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			2			18.919	18.919	2;3	1.7099E-61	9608	DP1061-13	175.27	145.34			0.80527	0.82928	13.334	2	0	Median	83939000	43459000	40480000	728	68	686	1414;1415	3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246	3244	86	12	9606
HLCGDTNYAWPTAEIAVMGAK	1	0	Unmodified	2304.0667	0.066722717	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.151	20.151	3	0.039058	11251	DP1061-13	39.935	25.173			0.96372	0.99245	NaN	1	0	Median	19198000	8105500	11092000	729	68	686	1416	3247	3247		1	9606
HLEPALAFQLELNR	0	1	Unmodified	1649.8889	0.88893999	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2	0		3				20.094	20.094	2;3	1.4691E-06	9083	DP1061-12	119.17	100.93			0.75325	0.8165	NaN	1	0	Median	50110000	27892000	22217000	730	287;26	687	1417;1418;1419	3248;3249;3250;3251;3252	3252		5	9606
HLEVQILADQYGNAISLFGR	0	1	Unmodified	2243.1699	0.16986588	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				22.659	22.659	3	0.0049193	12125	DP1061-12	91.725	54.433			NaN	NaN	NaN	0	0	Median	2652500	0	2652500	731	287	688	1420	3253	3253		1	9606
HLQELVGQETLPR	0	1	Unmodified	1518.8154	0.8154407	373	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	3	0			1			16.415	16.415	3	0.046821	6768	DP1061-13	57.804	7.8698			NaN	NaN	NaN	0	0	Median	0	0	0	732	373	689	1421	3254	3254		1	9606
HLQLAIR	0	1	Unmodified	849.51847	0.51847082	64;84;83	Q93077;Q7L7L0;P04908;Q96QV6;P16104;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;Q71UI9;P0C0S5	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AA;H2AFX;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFV;H2AFZ	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.V;Histone H2A.Z	no	no	0	0	0	5	0					1	14.616	14.616	2	0.0086357	4748	DP1061-15	95.793	27.395			1.5685	1.4732	NaN	1	0	Median	117550000	42935000	74619000	733	64;84;83	690	1422	3255;3256;3257	3257		3	9606
HMEMYADR	0	1	2 Oxidation (M)	1083.4114	0.41136449	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					12.4	12.4	2	0.029906	1950	DP1061-11	49.442	31.117			0.86089	0.92279	NaN	1	0	Median	9478100	5308900	4169200	734	287	691	1423	3258;3259	3259	283;284	2	9606
HMEMYADR	0	1	Unmodified	1051.4215	0.42153524	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.406	13.406	2	0.0046001	2660	DP1061-11	98.629	90.289			0.9749	1.0079	NaN	1	0	Median	36896000	18468000	18428000	735	287	691	1424	3260;3261	3261		2	9606
HMEMYADR	0	1	Oxidation (M)	1067.4164	0.41644987	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					12.398	12.398	2	0.015045	1867	DP1061-11	122.18	100.22			NaN	NaN	NaN	0	0	Median	0	0	0	736	287	691	1425	3262	3262	283;284	1	9606
HMEMYADRESR	0	2	2 Oxidation (M)	1455.5871	0.58709702	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	1	1	0	1					12.397	12.397	3	0.01516	1838	DP1061-11	48.981	36.548			0.98784	1.0086	NaN	1	0	Median	37799000	18964000	18835000	737	287	692	1426	3263	3263	283;284	1	9606
HMFHVAWVDPEDPYK	1	0	Oxidation (M)	1885.8458	0.84575455	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				18.241	18.241	3	6.9475E-05	6813	DP1061-11	85.837	85.837			0.79726	0.84319	0.82386	2	0	Median	33045000	18626000	14419000	738	287	693	1427;1428	3264;3265;3266;3267;3268;3269;3270	3266	285	7	9606
HMFHVAWVDPEDPYKGYR	1	1	Oxidation (M)	2262.0317	0.03165784	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0		3				18.256	18.256	4	9.3858E-25	6788	DP1061-12	134.81	121.77			0.87244	0.91313	NaN	1	0	Median	40689000	29269000	11420000	739	287	694	1429;1430;1431	3271;3272;3273;3274;3275;3276	3271	285	6	9606
HMLPSGFR	0	1	Oxidation (M)	959.46472	0.46472069	241	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	0	5	0					1	13.588	13.588	2	0.027542	3930	DP1061-15	64.803	20.192			1.0684	1.0035	NaN	1	0	Median	3374600	1627200	1747400	740	241	695	1432	3277	3277	249	1	9606
HNFCFMEMNTR	0	1	2 Oxidation (M)	1517.585	0.58498853	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	3	0			3			15.02	15.02	2;3	0.00081135	4849	DP1061-13	78.939	77.095			0.97941	1.0011	2.5189	2	0	Median	94308000	41841000	52466000	741	395	696	1433;1434;1435	3278;3279;3280;3281;3282;3283;3284;3285	3278	405;406	8	9606
HNFCFMEMNTR	0	1	Oxidation (M)	1501.5901	0.59007391	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			2			16.145	16.145	2;3	0.0019707	6320	DP1061-13	77.533	77.533			0.99192	1.0157	3.2261	2	0	Median	44714000	21840000	22875000	742	395	696	1436;1437	3286;3287;3288;3289;3290;3291;3292;3293	3286	405;406	8	9606
HNFCFMEMNTR	0	1	Unmodified	1485.5952	0.59515929	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.574	17.574	3	0.01846	8077	DP1061-13	73.273	54.543			NaN	NaN	NaN	0	0	Median	0	0	0	743	395	696	1438	3294	3294		1	9606
HPAKPDPSGECNPDLR	1	1	Unmodified	1788.8213	0.82133071	330	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	3	0			1			12.505	12.505	3	0.0088237	2622	DP1061-13	96.414	69.765			NaN	NaN	NaN	0	0	Median	6860600	0	6860600	744	330	697	1439	3295	3295		1	9606
HPENYDLATLK	1	0	Unmodified	1299.6459	0.64591575	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				15.606	15.606	2	0.010214	4732	DP1061-12	89.029	46.165			NaN	NaN	NaN	0	0	Median	0	0	0	745	258	698	1440	3296	3296		1	9606
HPSKPDPSGECNPDLR	1	1	Unmodified	1804.8162	0.81624534	281	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	1	3	0			1			12.494	12.494	3	4.299E-10	2603	DP1061-13	143.97	91.477			NaN	NaN	NaN	0	0	Median	9746000	0	9746000	746	281	699	1441	3297;3298	3297		2	9606
HQGLPQEVLNENLLR	0	1	Unmodified	1758.9377	0.9376811	7	CON__P02662			yes	yes	0	0	0	2.43	1.18	2	2	1	2		18.543	18.543	2;3	1.0205E-08	8558	DP1061-14	127.03	97.662		+	NaN	NaN	NaN	0	0	Median	18907000	18907000	0	747	7	700	1442;1443;1444;1445;1446;1447;1448	3299;3300;3301;3302;3303;3304;3305;3306;3307;3308;3309	3306		11	
HQVEQLSSSLK	1	0	Unmodified	1254.6568	0.65681479	313	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					13.832	13.832	2	0.0061986	3042	DP1061-11	94.409	41.472			NaN	NaN	NaN	0	0	Median	873440	0	873440	748	313	701	1449	3310;3311	3311		2	9606
HQYYNLK	1	0	Unmodified	964.47667	0.47666558	96	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		12.991	12.991	2	0.042546	3317	DP1061-14	78.616	35.746			4.1993	4.0108	NaN	1	0	Median	2674000	448590	2225400	749	96	702	1450	3312	3312		1	9606
HSGPNSADSANDGFVR	0	1	Unmodified	1629.7132	0.71316047	192	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3.33	0.471			2	1		13.293	13.293	2;3	4.4387E-15	3435	DP1061-13	121.45	102.12			2.8503	2.9168	NaN	1	0	Median	32650000	7091100	25559000	750	192	703	1451;1452;1453	3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323	3313		11	9606
HTGPNSPDTANDGFVR	0	1	Unmodified	1683.7601	0.76011066	134	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3.33	0.471			2	1		13.947	13.947	2;3	3.6136E-29	4185	DP1061-13	150.69	123.8			1.0079	1.0293	4.2402	2	0	Median	53675000	25234000	28441000	751	134	704	1454;1455;1456	3324;3325;3326;3327;3328;3329;3330	3326		7	9606
HTPLVEFEEEESDKR	1	1	Unmodified	1843.8588	0.85882166	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		16.044	16.044	3	6.4271E-39	6201	DP1061-13	164.88	145.95			0.78697	0.80022	3.5986	2	0	Median	101070000	58337000	42734000	752	395	705	1457;1458;1459	3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348	3332		18	9606
HTPLVEFEEEESDKRESE	1	1	Unmodified	2188.976	0.97603626	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	3.4	1.11	1		5	2	2	17.347	17.347	2;3	3.6424E-101	6419	DP1061-14	219.53	219.53			0.70878	0.69763	24.843	2	0	Median	69957000	43056000	26901000	753	395	706	1460;1461;1462;1463;1464;1465;1466;1467;1468;1469	3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360;3361;3362;3363;3364;3365	3360		16	9606
HVSPLIGR	0	1	Unmodified	877.51339	0.51338544	416	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		13.424	13.424	2	0.04575	3643	DP1061-14	80.462	31.104			NaN	NaN	NaN	0	0	Median	2534600	0	2534600	754	416	707	1470	3366	3366		1	9606
HWHEACFHCSQCR	0	1	Unmodified	1813.6984	0.69839558	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		13.219	13.219	4	0.012609	3453	DP1061-14	49.356	41.979			1.018	1.0402	NaN	1	0	Median	7173600	3477300	3696300	755	307	708	1471	3367;3368;3369	3368		3	9606
HWPFQVINDGDKPK	2	0	Unmodified	1679.842	0.8419898	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			17.232	17.232	3	0.00869	7595	DP1061-13	73.877	40.682			NaN	NaN	NaN	0	0	Median	8335100	8335100	0	756	85	709	1472	3370	3370		1	9606
HYFIEVNSR	0	1	Unmodified	1163.5724	0.57235688	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		15.684	15.684	2	0.00042794	4768	DP1061-12	107.69	72.338			0.91452	0.99132	41.067	3	0	Median	299750000	158060000	141690000	757	89	710	1473;1474;1475;1476	3371;3372;3373;3374;3375;3376;3377;3378	3371		8	9606
IAAGEKIPLSQEEITLQGHAFEAR	1	1	Unmodified	2607.3657	0.36566515	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		18.223	18.223	3;4	1.7646E-50	8791	DP1061-13	159.67	159.67			0.89137	0.91601	9.1759	3	0	Plateau	192910000	105140000	87772000	758	395	711	1477;1478;1479	3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391	3385		13	9606
IADGYEQAAR	0	1	Unmodified	1092.52	0.51998696	170	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			13.604	13.604	2	0.0077209	3771	DP1061-13	76.17	17.388			4.657	4.774	NaN	1	0	Median	15865000	3052500	12813000	759	170	712	1480	3392;3393	3392		2	9606
IADREDEYKK	2	1	Unmodified	1265.6252	0.62518031	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	2	2	0		1				12.391	12.391	3	0.0067033	2136	DP1061-12	83.869	40.218			NaN	NaN	NaN	0	0	Median	65179000	0	65179000	760	46	713	1481	3394;3395	3395		2	9606
IAEEFEVELER	0	1	Unmodified	1362.6667	0.66671078	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.86	0.99		4		3		19.968	19.968	2	5.8108E-37	7956	DP1061-12	172.98	121.92			0.85843	0.93052	NaN	1	0	Median	145480000	79105000	66380000	761	89	714	1482;1483;1484;1485;1486;1487;1488	3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413	3399		18	9606
IAEGVNSLLQMAGLLAR	0	1	Oxidation (M)	1770.9662	0.96620404	138	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	1	0	4	0				1		22.567	22.567	2	0.048722	12736	DP1061-14	80.69	48.167			NaN	NaN	NaN	0	0	Median	0	0	0	762	138	715	1489	3414	3414		1	9606
IALTDNALIAR	0	1	Unmodified	1169.6768	0.67682195	104	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		18.225	18.225	2	1.3502E-13	8240	DP1061-14	140.11	55.369			1.7677	1.8061	NaN	1	0	Median	17663000	6466500	11197000	763	104	716	1490	3415;3416;3417;3418;3419;3420	3416		6	9606
IALYGLGSIPDER	0	1	Unmodified	1402.7456	0.7456298	179	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	3	0			1			20.248	20.248	2	0.004113	11362	DP1061-13	97.734	44.948			NaN	NaN	NaN	0	0	Median	0	0	0	764	179	717	1491	3421	3421		1	9606
IANPVEGSSGR	0	1	Unmodified	1085.5465	0.54653606	319	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		13.435	13.435	2	0.0039712	3650	DP1061-14	81.338	33.763			1.2131	1.2395	NaN	1	0	Median	6202500	2712000	3490500	765	319	718	1492	3422;3423;3424;3425	3425		4	9606
IANPVEGSTDR	0	1	Unmodified	1157.5677	0.56766543	320	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				2		13.899	13.899	2	0.021914	4056	DP1061-14	79.974	18.295			NaN	NaN	NaN	0	0	Median	2898900	0	2898900	766	320	719	1493;1494	3426;3427;3428	3427		3	9606
IAPYVAHNFSK	1	0	Unmodified	1245.6506	0.6506072	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.14	0.639	1	4	2			15.143	15.143	2;3	3.8718E-09	4054	DP1061-12	121.36	121.36			0.8189	0.85182	8.4136	6	0	Median	419490000	228860000	190630000	767	89	720	1495;1496;1497;1498;1499;1500;1501	3429;3430;3431;3432;3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444;3445;3446;3447;3448;3449	3433		21	9606
IASSIVAQTAGIPTLPWSGSGLR	0	1	Unmodified	2281.243	0.24303082	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.14	0.99	2	3	1	1		22.291	22.291	2;3	5.8501E-151	10721	DP1061-11	244	244			0.81652	0.88509	9.0789	5	0	Median	171310000	127600000	43704000	768	287	721	1502;1503;1504;1505;1506;1507;1508	3450;3451;3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471;3472;3473	3450		24	9606
IATGHGQQGVTQVVLK	1	0	Unmodified	1634.9104	0.91040372	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	2	0		1				14.898	14.898	3	0.0010796	4117	DP1061-12	103.77	62.146			NaN	NaN	NaN	0	0	Median	18767000	0	18767000	769	185	722	1509	3474	3474		1	9606
IAWDDEETR	0	1	Unmodified	1133.4989	0.49891717	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			2			16.327	16.327	2	0.027617	6521	DP1061-13	85.161	46.198			NaN	NaN	NaN	0	0	Median	23319000	23319000	0	770	67	723	1510;1511	3475;3476;3477	3475		3	9606
IAWDDEETRDGFR	0	2	Unmodified	1608.7168	0.71684887	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.6	0.8			3	1	1	17.447	17.447	2;3	1.1536E-24	7576	DP1061-13	101.35	75.963			1.059	1.0618	13.155	5	0	Median	355180000	174220000	180950000	771	67	724	1512;1513;1514;1515;1516	3478;3479;3480;3481;3482;3483;3484;3485;3486;3487;3488;3489;3490	3486		12	9606
ICCDLDVLASK	1	0	Unmodified	1292.6105	0.61045823	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	1			1		1	17.913	17.913	2	0.0094748	8692	DP1061-13	72.096	51.124			1.2816	1.2293	14.714	2	0	Median	92311000	44307000	48003000	772	68	725	1517;1518	3491;3492	3491		2	9606
ICDECNYGSYQGR	0	1	Unmodified	1620.6297	0.62969012	355	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	5	0					1	14.939	14.939	2	3.7103E-36	5118	DP1061-15	218.49	194.11			NaN	NaN	NaN	0	0	Median	2470000	0	2470000	773	355	726	1519	3493;3494	3494		2	9606
ICGDIHGQYTDLLR	0	1	Unmodified	1659.8039	0.80388973	211	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	4	0				2		17.641	17.641	2;3	0.014244	7651	DP1061-14	77.776	47.209			NaN	NaN	NaN	0	0	Median	18296000	0	18296000	774	211	727	1520;1521	3495;3496;3497	3496		3	9606
ICGDIHGQYYDLLR	0	1	Unmodified	1721.8195	0.8195398	210;142	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.73	0.617			4	6	1	21.305	21.305	2;3	2.5638E-16	8453	DP1061-14	171.32	129.92			NaN	NaN	NaN	0	0	Median	405750000	0	405750000	775	142;210	728	1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532	3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510;3511;3512;3513;3514;3515;3516	3508		19	9606
IDALNENK	1	0	Unmodified	915.46616	0.46616048	10	CON__P02754			yes	yes	0	0	0	4.5	0.5				1	1	12.723	12.723	2	0.014686	3067	DP1061-15	121.99	61.19		+	NaN	NaN	NaN	0	0	Median	7155800	7155800	0	776	10	729	1533;1534	3517;3518;3519	3519		3	
IDDVVNTR	0	1	Unmodified	930.47706	0.47705951	184	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			13.692	13.692	2	0.015481	3896	DP1061-13	119.17	69.047			NaN	NaN	NaN	0	0	Median	10398000	0	10398000	777	184	730	1535	3520;3521	3521		2	9606
IDLTLLNR	0	1	Unmodified	956.56548	0.56548059	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					19.469	19.469	2	0.023649	7972	DP1061-11	104.45	36.026			NaN	NaN	NaN	0	0	Median	4473700	0	4473700	778	347	731	1536	3522	3522		1	9606
IDTGWLDR	0	1	Unmodified	974.48214	0.48214489	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.8	0.748	2	2	1			19.834	19.834	2	4.4687E-10	6845	DP1061-11	135.77	61.351			0.88362	0.92283	3.4251	3	0	Median	352120000	172910000	179220000	779	287	732	1537;1538;1539;1540;1541	3523;3524;3525;3526;3527;3528;3529;3530;3531;3532;3533;3534	3524		12	9606
IDTIEIITDR	0	1	Unmodified	1187.6398	0.63976774	114	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		19.046	19.046	2	0.014725	9149	DP1061-14	111.46	42.54			NaN	NaN	NaN	0	0	Median	2803100	0	2803100	780	114	733	1542	3535	3535		1	9606
IEDFLER	0	1	Unmodified	920.46035	0.46034682	166	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	17.388	17.388	2	2.2839E-09	7470	DP1061-15	130.77	76.001			1.6855	1.5832	NaN	1	0	Median	14975000	5260300	9714400	781	166	734	1543	3536;3537;3538	3536		3	9606
IEDVTPIPSDSTR	0	1	Unmodified	1428.7096	0.70963822	215	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	16.274	16.274	2	2.8629E-07	6277	DP1061-15	106.29	106.29			1.1843	1.1124	NaN	1	0	Median	14643000	7183600	7459100	782	215	735	1544	3539;3540;3541;3542;3543;3544	3540		6	9606
IEDVTPIPSDSTRR	0	2	Unmodified	1584.8107	0.81074925	215	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	15.086	15.086	3	0.0022018	5269	DP1061-15	93.345	55.347			NaN	NaN	NaN	0	0	Median	0	0	0	783	215	736	1545	3545	3545		1	9606
IEGDETSTEAATR	0	1	Unmodified	1378.6212	0.62121715	191	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	5	0					1	12.71	12.71	2	0.0001863	3003	DP1061-15	108.9	66.305			NaN	NaN	NaN	0	0	Median	1287200	0	1287200	784	191	737	1546	3546;3547	3547		2	9606
IEGLQNLVNLR	0	1	Unmodified	1267.7248	0.72483478	327	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		20.145	20.145	2	0.00049563	10288	DP1061-14	146.69	73.029			NaN	NaN	NaN	0	0	Median	2012200	0	2012200	785	327	738	1547	3548;3549	3549		2	9606
IEISELNR	0	1	Unmodified	972.52401	0.52400971	60;17	CON__P35908v2;P35908;CON__P35908;P04264;CON__P04264	KRT2;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1	no	no	0	0	0	4	0.816			1	1	1	16.221	16.221	2	0.0019409	6178	DP1061-15	145.04	20.158		+	NaN	NaN	NaN	0	0	Median	95963000	95963000	0	786	17;60	739	1548;1549;1550	3550;3551;3552;3553;3554;3555	3555		6	9606
IETNENNLESAK	1	0	Unmodified	1360.647	0.64703797	278	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			13.461	13.461	2	4.2281E-11	3638	DP1061-13	123.79	123.79			1.0174	1.0478	NaN	1	0	Median	6299000	2860300	3438700	787	278	740	1551	3556;3557	3556		2	9606
IEVIEIMTDR	0	1	Oxidation (M)	1233.6275	0.6274885	82	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		17.59	17.59	2	0.027585	7571	DP1061-14	89.08	43.107			NaN	NaN	NaN	0	0	Median	19125000	0	19125000	788	82	741	1552	3558;3559	3559	107	2	9606
IEVIEIMTDR	0	1	Unmodified	1217.6326	0.63257388	82	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		19.895	19.895	2	0.011974	10048	DP1061-14	111.46	47.89			NaN	NaN	NaN	0	0	Median	9310100	0	9310100	789	82	741	1553	3560;3561	3561		2	9606
IFCCHGGLSPDLQSMEQIR	0	1	Oxidation (M)	2263.0184	0.018392316	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	0	3.7	0.64			4	5	1	17.653	17.653	2;3	5.4158E-24	7583	DP1061-13	168.42	151.13			NaN	NaN	NaN	0	0	Median	190950000	0	190950000	790	142;210;211	742	1554;1555;1556;1557;1558;1559;1560;1561;1562;1563	3562;3563;3564;3565;3566;3567;3568;3569;3570;3571;3572;3573;3574;3575;3576;3577;3578;3579;3580;3581	3563	176	20	9606
IFCCHGGLSPDLQSMEQIR	0	1	Unmodified	2247.0235	0.023477694	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		18.937	18.937	3	2.1585E-16	9651	DP1061-13	152.59	124.74			NaN	NaN	NaN	0	0	Median	43055000	0	43055000	791	142;210;211	742	1564;1565	3582;3583;3584;3585;3586	3582		5	9606
IFCCHGGLSPDLQSMEQIRR	0	2	Unmodified	2403.1246	0.12458872	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			1	1		17.832	17.832	4	0.0033476	7835	DP1061-14	82.663	63.707			NaN	NaN	NaN	0	0	Median	20469000	0	20469000	792	142;210;211	743	1566;1567	3587;3588;3589	3589		3	9606
IFCCHGGLSPDLQSMEQIRR	0	2	Oxidation (M)	2419.1195	0.11950334	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	1	4	0				1		16.176	16.176	4	0.042761	6113	DP1061-14	47	31.837			NaN	NaN	NaN	0	0	Median	33180000	0	33180000	793	142;210;211	743	1568	3590	3590	176	1	9606
IFGYPVGIVGNNGVLFSESAK	1	0	Unmodified	2167.1314	0.13135511	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		22.594	22.594	2	1.1093E-171	14230	DP1061-13	260.97	260.97			0.85754	0.85048	5.5636	2	0	Median	86377000	48407000	37970000	794	417	744	1569;1570	3591;3592;3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603	3592		13	9606
IFGYPVGIVGNNGVLFSESAKK	2	0	Unmodified	2295.2263	0.22631813	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.934	20.934	3	1.4311E-07	12187	DP1061-13	124.94	86.716			NaN	NaN	NaN	0	0	Median	8465700	0	8465700	795	417	745	1571	3604;3605;3606;3607	3606		4	9606
IFSRFPEDMMMLK	1	1	3 Oxidation (M)	1691.7721	0.7721206	107	P19113	HDC	Histidine decarboxylase	yes	yes	0	3	1	1	0	1					16.934	16.934	2	0.039436	5479	DP1061-11	54.066	23.242			NaN	NaN	NaN	0	0	Median	0	0	0	796	107	746	1572	3608	3608	147;148;149	1	9606
IGEEQSPEDAEDGPPELLFIHGGHTAK	1	0	Unmodified	2872.3515	0.35153123	281	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	3	0			1			18.498	18.498	4	0.008888	9051	DP1061-13	55.171	34.149			NaN	NaN	NaN	0	0	Median	13716000	0	13716000	797	281	747	1573	3609;3610	3609		2	9606
IGGIGTVPVGR	0	1	Unmodified	1024.6029	0.60292873	251	Q5VTE0;P68104;Q05639	EEF1A1P5;EEF1A1;EEF1A2	Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2	yes	no	0	0	0	3.5	0.5			1	1		16.335	16.335	2	6.6768E-13	6667	DP1061-13	131.22	68.758			0.97646	0.99859	1.3475	2	0	Median	29702000	14717000	14985000	798	251	748	1574;1575	3611;3612;3613;3614;3615;3616;3617	3612		7	9606
IGGVQQDTILAEGLHFR	0	1	Unmodified	1852.9795	0.97954591	396	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		19.688	19.688	3	3.7093E-11	9844	DP1061-14	107.07	77.456			0.94699	0.96759	NaN	1	0	Median	5859500	3279700	2579800	799	396	749	1576	3618	3618		1	9606
IGLAEEIR	0	1	Unmodified	899.50763	0.50763136	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.764	4	1	1			21.062	21.062	2	5.6267E-10	5165	DP1061-11	134.06	19.336			0.8802	0.92068	15.46	6	0	Median	764310000	394330000	369970000	800	287	750	1577;1578;1579;1580;1581;1582	3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629;3630;3631;3632	3621		13	9606
IGSFGPGEDLLYLR	0	1	Unmodified	1535.7984	0.79839365	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.878	21.878	2	8.9691E-14	10339	DP1061-11	123.8	123.8			0.95044	1.0383	NaN	1	0	Median	3611100	2115800	1495300	801	26	751	1583	3633;3634;3635	3633		3	9606
IGSFGPQEDLLFLR	0	1	Unmodified	1590.8406	0.84059282	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.11	0.875	2	5	1	1		24.826	24.826	2	2.0969E-48	10878	DP1061-11	175.49	146.53			0.89941	0.9043	3.6424	4	0	Median	310530000	163240000	147280000	802	287	752	1584;1585;1586;1587;1588;1589;1590;1591;1592	3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660	3638		25	9606
IHFPLATYAPVISAEK	1	0	Unmodified	1755.956	0.95595693	252;400	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			2			19.913	19.913	2;3	1.1607E-06	10787	DP1061-13	93.237	93.237			1.3076	1.3466	1.4878	2	0	Median	98512000	39340000	59172000	803	252;400	753	1593;1594	3661;3662;3663;3664;3665	3663		4	9606
IHNANPELTDGQIQAMLR	0	1	Oxidation (M)	2036.0109	0.010922397	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.5	1.32	2	3	1	1	1	16.65	16.65	2;3	3.3702E-17	5681	DP1061-12	124.81	109.31			0.86781	0.90481	8.4604	7	0	Median	380570000	203380000	177190000	804	287	754	1595;1596;1597;1598;1599;1600;1601;1602	3666;3667;3668;3669;3670;3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689	3677	286	24	9606
IHNANPELTDGQIQAMLR	0	1	Unmodified	2020.016	0.016007775	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.25	1.64	2	1			1	18.53	18.53	2;3	1.2852E-44	7024	DP1061-11	151.59	128.23			0.81921	0.86898	23.403	4	0	Median	69244000	35364000	33880000	805	287	754	1603;1604;1605;1606	3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701	3690		12	9606
IHQETFGK	1	0	Unmodified	958.48723	0.48723027	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					12.399	12.399	2	0.01906	1904	DP1061-11	111.01	42.093			NaN	NaN	NaN	0	0	Median	17625000	0	17625000	806	321	755	1607	3702	3702		1	9606
IIAPPER	0	1	Unmodified	794.46504	0.46503826	199;249;228	P60709;Q562R1;P63267;P68133;P68032;P62736;P63261	ACTB;ACTBL2;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		13.745	13.745	2	0.028422	3928	DP1061-14	94.163	29.387			NaN	NaN	NaN	0	0	Median	4950100	0	4950100	807	199;228;249	756	1608	3703;3704	3704		2	9606
IIDEVVNK	1	0	Unmodified	928.52295	0.52294707	58	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	14.156	14.156	2	0.051804	4376	DP1061-15	76.035	6.8368			NaN	NaN	NaN	0	0	Median	3450400	0	3450400	808	58	757	1609	3705	3705		1	9606
IIDVVYNASNNELVR	0	1	Unmodified	1717.8999	0.89989861	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	18.95	18.95	2	2.0106999999999998E-28	9126	DP1061-15	148.18	148.18			1.7801	1.6719	NaN	1	0	Median	16826000	6526300	10300000	809	212	758	1610	3706;3707;3708;3709	3707		4	9606
IIEEAPAPGIK	1	0	Unmodified	1136.6441	0.64412484	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		15.514	15.514	2	1.4594E-09	5708	DP1061-13	128.36	112.16			0.76869	0.76236	11.015	2	0	Median	277750000	152860000	124890000	810	395	759	1611;1612	3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720	3713		11	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Oxidation (M)	2670.3033	0.30332417	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.4	0.8	1	1	3			18.869	18.869	3	6.8589E-14	7334	DP1061-11	113.63	91.733			0.70376	0.7443	19.306	2	0	Median	111330000	56360000	54975000	811	287	760	1613;1614;1615;1616;1617	3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733	3724	287	13	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Unmodified	2654.3084	0.30840955	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.65	20.65	3	3.5419E-09	9112	DP1061-11	100.9	91.054			0.82854	0.88203	NaN	1	0	Median	22434000	12039000	10395000	812	287	760	1618	3734;3735;3736;3737;3738;3739	3734		6	9606
IIEFVPTK	1	0	Unmodified	945.55352	0.55351892	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	0.829	2	1	1			19.029	19.029	2	0.00022414	6048	DP1061-11	113.5	48.723			0.86883	0.89472	2.643	3	0	Median	583300000	314280000	269030000	813	287	761	1619;1620;1621;1622	3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754;3755;3756	3743		17	9606
IIEFVPTKTPYDPR	1	1	Unmodified	1674.8981	0.8981077	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.183	18.183	3	0.0034631	6655	DP1061-11	49.929	29.146			0.96929	1.0264	NaN	1	0	Median	6302500	2649300	3653200	814	287	762	1623	3757;3758	3758		2	9606
IIEPLTSR	0	1	Unmodified	927.53893	0.53893149	137	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	4	0				2		15.425	15.425	2	0.036143	5556	DP1061-14	95.531	34.743			NaN	NaN	NaN	0	0	Median	0	0	0	815	137	763	1624;1625	3759;3760	3760		2	9606
IIGATDSSGELMFLMK	1	0	2 Oxidation (M)	1743.8423	0.84230866	291	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	yes	no	0	2	0	5	0					1	19.511	19.511	2	2.7894E-08	9780	DP1061-15	128.28	87.667			NaN	NaN	NaN	0	0	Median	10831000	0	10831000	816	291	764	1626	3761;3762	3761	318;319	2	9606
IIGATDSSGELMFLMK	1	0	Oxidation (M)	1727.8474	0.84739403	291	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	yes	no	0	1	0	5	0					1	20.506	20.506	2	0.001914	10837	DP1061-15	109.6	57.432			NaN	NaN	NaN	0	0	Median	3528000	0	3528000	817	291	764	1627	3763;3764	3763	318;319	2	9606
IIGIMEEVADGFK	1	0	Unmodified	1420.7272	0.72720254	193	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	2	0		1				22.473	22.473	2	0.017659	11846	DP1061-12	80.102	38.672			NaN	NaN	NaN	0	0	Median	0	0	0	818	193	765	1628	3765	3765		1	9606
IIKDFMIQGGDPTGTGR	1	1	Oxidation (M)	1820.9091	0.90908309	451	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	1	1	5	0					1	16.398	16.398	3	0.0022251	6471	DP1061-15	97.081	46.923			NaN	NaN	NaN	0	0	Median	4192200	0	4192200	819	451	766	1629	3766	3766	447	1	9606
IILDLISESPIK	1	0	Unmodified	1339.7963	0.79626839	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			21.649	21.649	2	9.8483E-24	13090	DP1061-13	153.97	153.97			9.4083	9.6888	NaN	1	0	Median	16990000	1903900	15086000	820	209	767	1630	3767;3768	3768		2	9606
IINDLLQSLR	0	1	Unmodified	1183.6925	0.69247202	382	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2.5	0.5		1	1			20.427	20.427	2	0.010907	9516	DP1061-12	100.25	57.163			NaN	NaN	NaN	0	0	Median	4439300	0	4439300	821	382	768	1631;1632	3769;3770;3771	3769		3	9606
IINEPTAAAIAYGLDK	1	0	Unmodified	1658.8879	0.88793694	88;87	P11142;P54652;P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	no	no	0	0	0	3	0			1			19.827	19.827	2	1.4015E-09	10723	DP1061-13	109	68.843			4.131	4.2541	NaN	1	0	Median	24166000	4731800	19434000	822	88;87	769	1633	3772;3773	3772		2	9606
IINEPTAAAIAYGLDKK	2	0	Unmodified	1786.9829	0.98289996	88	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			1			18.412	18.412	3	0.013464	8990	DP1061-13	79.565	53.699			NaN	NaN	NaN	0	0	Median	33678000	0	33678000	823	88	770	1634	3774;3775	3775		2	9606
IINEPTAAAIAYGLDR	0	1	Unmodified	1686.8941	0.89408495	85;101	P0DMV9;P0DMV8;P17066	HSPA1B;HSPA1A;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6	no	no	0	0	0	3.2	0.542			13	1	1	24.247	24.247	2;3	1.686E-29	11044	DP1061-13	153.38	94.869			3.9455	4.0313	26.933	3	0	Median	376840000	61932000	314910000	824	85;101	771	1635;1636;1637;1638;1639;1640;1641;1642;1643;1644;1645;1646;1647;1648;1649	3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804	3776		29	9606
IIPPQPMEGLGFLDALNSAPVPGIK	1	0	Oxidation (M)	2589.3876	0.38764615	394	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2	0		1				23.598	23.598	3	0.00052713	13113	DP1061-12	86.211	54.066			NaN	NaN	NaN	0	0	Median	4416200	0	4416200	825	394	772	1650	3805;3806;3807;3808	3805	402	4	9606
IIQLLDDYPK	1	0	Unmodified	1216.6703	0.67033959	71	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		19.422	19.422	2	1.4197E-05	9530	DP1061-14	113.22	113.22			1.4368	1.3723	NaN	1	0	Median	11719000	5601200	6117700	826	71	773	1651	3809;3810;3811;3812	3812		4	9606
IIQQAGQVWFPDSAFK	1	0	Unmodified	1833.9414	0.94136949	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1	3	3	1	1		23.146	23.146	2;3	3.277E-172	9751	DP1061-11	267.37	267.37			0.88409	0.89715	16.872	6	0	Median	253180000	133660000	119520000	827	287	774	1652;1653;1654;1655;1656;1657;1658;1659	3813;3814;3815;3816;3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844	3814		32	9606
IIQQAGQVWFPDSAYK	1	0	Unmodified	1849.9363	0.93628412	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	4					20.49	20.49	2	2.5694E-09	9193	DP1061-11	139.31	73.465			0.7155	0.76169	NaN	1	0	Median	8143200	3240300	4902800	828	26	775	1660;1661;1662;1663	3845;3846;3847;3848	3848		4	9606
IITHPNFNGNTLDNDIMLIK	1	0	Oxidation (M)	2298.1678	0.16781697	5	CON__P00761			yes	yes	0	1	0	3.51	1.05	2	6	13	18	8	28.829	28.829	2;3	7.282E-32	10329	DP1061-13	179.95	127.9		+	NaN	NaN	NaN	0	0	Median	1235700000	1235700000	0	829	5	776	1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708;1709;1710	3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860;3861;3862;3863;3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941	3872	1	93	
IITHPNFNGNTLDNDIMLIK	1	0	Unmodified	2282.1729	0.17290235	5	CON__P00761			yes	yes	0	0	0	3.2	1.25	1	2	3	2	2	20.617	20.617	2;3	1.6002E-57	9215	DP1061-12	177.88	144.26		+	NaN	NaN	NaN	0	0	Median	489130000	489130000	0	830	5	776	1711;1712;1713;1714;1715;1716;1717;1718;1719;1720	3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971	3947		30	
IITITGTQDQIQNAQYLLQNSVK	1	0	Unmodified	2588.381	0.38098087	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			21.947	21.947	2	1.0826E-147	13499	DP1061-13	280.5	239.1			NaN	NaN	NaN	0	0	Median	8426700	0	8426700	831	209	777	1721	3972;3973	3973		2	9606
IITLAGPTNAIFK	1	0	Unmodified	1357.7969	0.79693709	320	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		20.278	20.278	2	1.5048E-16	10423	DP1061-14	132.78	99.554			1.975	1.8864	NaN	1	0	Median	9525700	4048000	5477600	832	320	778	1722	3974;3975;3976;3977;3978	3975		5	9606
IITLTGPTNAIFK	1	0	Unmodified	1387.8075	0.80750177	319	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		20.23	20.23	2	8.4877E-17	10476	DP1061-14	136.96	80.395			1.1991	1.1452	NaN	1	0	Median	8949300	3906700	5042500	833	319	779	1723	3979;3980;3981;3982;3983;3984	3983		6	9606
IIVGDATEK	1	0	Unmodified	944.51786	0.51786169	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	3	0			1			13.638	13.638	2	0.023414	3795	DP1061-13	89.355	25.79			NaN	NaN	NaN	0	0	Median	11536000	0	11536000	834	390	780	1724	3985;3986	3986		2	9606
IKEWYEK	2	0	Unmodified	994.51238	0.51238239	15	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	5	0					1	14.379	14.379	2	0.016537	4533	DP1061-15	114.78	70.091		+	NaN	NaN	NaN	0	0	Median	12761000	12761000	0	835	15	781	1725	3987;3988	3988		2	9606
IKFEMEQNLR	1	1	Oxidation (M)	1322.6653	0.66527099	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2.67	1.25	1		1	1		14.732	14.732	3	0.004279	5015	DP1061-13	91.658	61.266		+	NaN	NaN	NaN	0	0	Median	25944000	25944000	0	836	16	782	1726;1727;1728	3989;3990;3991;3992;3993	3992	7	5	9606
IKYPENFFLLR	1	1	Unmodified	1438.7973	0.79727144	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.57	0.728			4	2	1	20.871	20.871	2;3	2.7923E-11	10150	DP1061-14	180.66	144.95			NaN	NaN	NaN	0	0	Median	263690000	0	263690000	837	142;210;211	783	1729;1730;1731;1732;1733;1734;1735	3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005;4006;4007;4008	4002		15	9606
ILDILGETCK	1	0	Unmodified	1160.6111	0.61111015	324	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	yes	no	0	0	0	2	0		2				19.099	19.099	2	0.019797	8013	DP1061-12	93.162	46.772			NaN	NaN	NaN	0	0	Median	0	0	0	838	324	784	1736;1737	4009;4010	4009		2	9606
ILELLRPDPNTGK	1	1	Unmodified	1464.83	0.83002813	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	1	1	0	1					17.629	17.629	2	0.0012715	6164	DP1061-11	105.2	44.513			NaN	NaN	NaN	0	0	Median	1875000	0	1875000	839	321	785	1738	4011	4011		1	9606
ILGADTSVDLEETGR	0	1	Unmodified	1574.7788	0.77878042	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.972	17.972	2	1.372E-37	8476	DP1061-13	155.99	134.42			1.0435	1.0684	NaN	1	0	Median	22803000	11551000	11251000	840	122	786	1739	4012;4013;4014;4015;4016	4015		5	9606
ILGPGLNK	1	0	Unmodified	810.49634	0.49633839	240	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	14.639	14.639	2	0.024134	4851	DP1061-15	81.381	18.666			1.4204	1.2688	NaN	1	0	Median	11462000	5047600	6414100	841	240	787	1740	4017	4017		1	9606
ILGTPDYLAPELLLGR	0	1	Unmodified	1739.9822	0.98217168	389	Q96GX5	MASTL	Serine/threonine-protein kinase greatwall	yes	yes	0	0	0	2	0		1				23.585	23.585	2	0.0010814	13226	DP1061-12	108.56	66.563			NaN	NaN	NaN	0	0	Median	1975500	0	1975500	842	389	788	1741	4018;4019;4020	4019		3	9606
ILLTLGIR	0	1	Unmodified	897.60114	0.60113781	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				19.943	19.943	2	0.040579	8970	DP1061-12	84.244	2.4598			NaN	NaN	NaN	0	0	Median	9365400	0	9365400	843	364	789	1742	4021	4021		1	9606
ILNVPQELYEK	1	0	Unmodified	1344.7289	0.7289171	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.7	1	6	2	1	1		21.217	21.217	2	1.5513E-62	7123	DP1061-11	208.11	208.11			0.86211	0.91252	9.1694	7	0	Median	620360000	325050000	295300000	844	287	790	1743;1744;1745;1746;1747;1748;1749;1750;1751;1752	4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051	4022		29	9606
ILPTLEAVAALGNK	1	0	Unmodified	1408.829	0.8289655	284	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		21.018	21.018	2	3.8618E-06	11229	DP1061-14	115.7	87.957			NaN	NaN	NaN	0	0	Median	3054800	0	3054800	845	284	791	1753	4052;4053;4054;4055	4052		4	9606
ILTFDQLALDSPK	1	0	Unmodified	1459.7922	0.79224564	276	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	20.931	20.931	2	4.7030000000000005E-68	11251	DP1061-15	206.49	157.43			1.4768	1.3192	NaN	1	0	Median	12786000	5046600	7739200	846	276	792	1754	4056;4057;4058;4059	4056		4	9606
ILVVIEPLLIDEDYYAR	0	1	Unmodified	2033.1085	0.1084944	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				24.541	24.541	2;3	1.6008E-18	14159	DP1061-12	166.04	130.99			NaN	NaN	NaN	0	0	Median	32099000	0	32099000	847	46	793	1755;1756	4060;4061;4062;4063;4064	4060		5	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Oxidation (M)	2170.1052	0.10521671	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.62	0.857			5	1	2	20.857	20.857	2;3	6.7183E-172	10405	DP1061-13	257.16	257.16			0.97832	0.99498	10.502	3	0	Median	208240000	99592000	108650000	848	68	794	1757;1758;1759;1760;1761;1762;1763;1764	4065;4066;4067;4068;4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092;4093	4069	87	29	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Unmodified	2154.1103	0.11030209	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		20.396	20.396	2;3	0	11454	DP1061-13	316.54	274.06			0.94906	0.97067	7.3422	2	0	Median	83288000	41714000	41573000	849	68	794	1765;1766;1767	4094;4095;4096;4097;4098;4099;4100	4094		7	9606
IMNTFSVVPSPK	1	0	Oxidation (M)	1334.6904	0.69042311	253;77;297	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		17.285	17.285	2	3.2608E-07	7636	DP1061-13	102.95	76.912			1.4338	1.4219	2.1946	2	0	Median	71217000	30164000	41054000	850	77;253;297	795	1768;1769	4101;4102;4103;4104;4105;4106;4107	4104	94	7	9606
INEELESQYQQSMDSK	1	0	Oxidation (M)	1943.8419	0.84185096	22	O00193	SMAP	Small acidic protein	yes	yes	0	1	0	4	0				1		15.898	15.898	2	0.025566	5900	DP1061-14	88.282	59.476			NaN	NaN	NaN	0	0	Median	0	0	0	851	22	796	1770	4108	4108	11	1	9606
INEILSNALK	1	0	Unmodified	1113.6394	0.63937381	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			17.841	17.841	2	0.0028674	8306	DP1061-13	89.047	39.951			1.1416	1.1756	NaN	1	0	Median	21506000	10009000	11497000	852	188	797	1771	4109;4110;4111;4112	4109		4	9606
INGCAIQCR	0	1	Unmodified	1090.5012	0.50118255	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			13.268	13.268	2	8.6619E-08	2888	DP1061-12	128.57	128.57			0.99072	1.0439	6.4639	2	0	Median	42064000	20936000	21128000	853	89	798	1772;1773	4113;4114;4115;4116;4117;4118;4119	4115		7	9606
INGWAVECR	0	1	Unmodified	1103.5182	0.51821282	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.535	16.535	2	4.2282E-05	6847	DP1061-13	114.89	79.599			0.99662	1.0186	NaN	1	0	Median	39157000	20245000	18912000	854	67	799	1774	4120;4121	4120		2	9606
INISEGNCPER	0	1	Unmodified	1287.5877	0.58774895	319;320	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	4	0				1		14.228	14.228	2	1.3387E-05	4402	DP1061-14	109.66	84.888			1.6715	1.7078	NaN	1	0	Median	7960400	2897800	5062500	855	319;320	800	1775	4122;4123;4124;4125;4126	4124		5	9606
INSICGR	0	1	Unmodified	818.40687	0.40687146	434	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	2	0		1				12.506	12.506	2	0.035517	2283	DP1061-12	85.359	37.186			NaN	NaN	NaN	0	0	Median	0	0	0	856	434	801	1776	4127	4127		1	9606
INTQWLLTSGTTEANAWK	1	0	Unmodified	2033.0218	0.02180466	21	CON__Streptavidin			yes	yes	0	0	0	4.84	0.488			1	1	17	27.327	27.327	2;3	1.7561E-137	16399	DP1061-15	309.49	242.28		+	NaN	NaN	NaN	0	0	Median	3856899999.9999995	3856899999.9999995	0	857	21	802	1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795	4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154;4155;4156;4157;4158;4159;4160;4161;4162;4163	4161		36	
INVYYNEATGGK	1	0	Unmodified	1327.6408	0.64083038	253	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	3.5	0.5			1	1		15.952	15.952	2	7.6725E-13	6208	DP1061-13	128.91	77.846			1.3768	1.3655	31.064	2	0	Median	54769000	21304000	33465000	858	253	803	1796;1797	4164;4165;4166;4167;4168;4169;4170;4171;4172;4173	4167		10	9606
IPCDSPQSDPVDTPTSTK	1	0	Unmodified	1943.8782	0.87823647	161	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		2				15.235	15.235	2	1.1727E-09	4529	DP1061-12	130.61	98.905			NaN	NaN	NaN	0	0	Median	3492100	0	3492100	859	161	804	1798;1799	4174;4175	4174		2	9606
IPDEFDNDPILVQQLR	0	1	Unmodified	1910.9738	0.97379183	336	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				1		21.239	21.239	2	6.0868E-09	11558	DP1061-14	130.44	87.718			NaN	NaN	NaN	0	0	Median	2572500	0	2572500	860	336	805	1800	4176;4177;4178	4178		3	9606
IPDWFLNR	0	1	Unmodified	1059.5502	0.55016488	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	20.648	20.648	2	1.8191E-10	10917	DP1061-15	139.68	61.566			1.1012	1.0343	NaN	1	0	Median	33717000	16357000	17360000	861	217	806	1801	4179;4180;4181;4182;4183	4179		5	9606
IPDWPTVGIEMDQNMAR	0	1	Oxidation (M)	1987.9132	0.91318219	464				yes	yes	0	1	0	5	0					1	16.101	16.101	2	0.034379	5999	DP1061-15	88.155	53.77	+		NaN	NaN	NaN	0	0	Median	919140000	919140000	0	862	464	807	1802	4184	4184	462	1	9606
IPGGIIEDSCVLR	0	1	Unmodified	1427.7442	0.74424959	172	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			18.939	18.939	2	0.00011099	9614	DP1061-13	113.93	58.574			NaN	NaN	NaN	0	0	Median	8723400	0	8723400	863	172	808	1803	4185;4186	4185		2	9606
IPLSQEEITLQGHAFEAR	0	1	Unmodified	2038.0484	0.048353761	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.07	0.249			14	1		22.929	22.929	2;3	3.3355E-208	9114	DP1061-13	302.73	302.73			0.87407	0.8907	4.0179	7	0	Median	504180000	256080000	248100000	864	395	809	1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817;1818	4187;4188;4189;4190;4191;4192;4193;4194;4195;4196;4197;4198;4199;4200;4201;4202;4203;4204;4205;4206;4207;4208;4209;4210;4211;4212;4213;4214;4215;4216;4217;4218;4219;4220;4221;4222;4223;4224;4225	4197		39	9606
IPPNVEK	1	0	Unmodified	795.44905	0.44905385	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				12.418	12.418	2	0.019494	2204	DP1061-12	100.74	32.709			NaN	NaN	NaN	0	0	Median	251770000	0	251770000	865	287	810	1819;1820;1821	4226;4227;4228;4229;4230	4229		5	9606
IPQALEK	1	0	Unmodified	797.4647	0.46470391	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	3	0			1			13.478	13.478	2	0.032737	3683	DP1061-13	90.986	26.209			NaN	NaN	NaN	0	0	Median	7547800	0	7547800	866	296	811	1822	4231;4232	4232		2	9606
IPVQAVWAGWGHASENPK	1	0	Unmodified	1945.9799	0.97988027	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.2	1.17	2	1	1	1		19.12	19.12	2;3	2.3526000000000002E-33	7749	DP1061-11	144.15	132.51			0.78929	0.82931	10.075	3	0	Median	95412000	50152000	45260000	867	287;26	812	1823;1824;1825;1826;1827	4233;4234;4235;4236;4237;4238;4239;4240;4241;4242;4243	4233		11	9606
IQDKEGIPPDQQR	1	1	Unmodified	1522.774	0.77396981	244	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	1	0	1					12.679	12.679	3	0.021212	2321	DP1061-11	50.145	29.482			1.9817	2.0984	NaN	1	0	Median	1975200	465970	1509200	868	244	813	1828	4244	4244		1	9606
IQDLSLLYQLFSR	0	1	Unmodified	1594.8719	0.87189295	301	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	2	0		1				24.957	24.957	2	0.021172	14756	DP1061-12	77.305	42.037			NaN	NaN	NaN	0	0	Median	0	0	0	869	301	814	1829	4245	4245		1	9606
IQEGVESLAGYADIFLR	0	1	Unmodified	1879.968	0.96797818	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		23.835	23.835	2	1.4792E-100	15686	DP1061-13	220.4	220.4			1.0858	1.1114	NaN	1	0	Median	25181000	11981000	13200000	870	68	815	1830;1831;1832	4246;4247;4248;4249;4250;4251;4252;4253	4250		8	9606
IQEQESSGEEDSDLSPEER	0	1	Unmodified	2162.9087	0.90874455	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		15.035	15.035	2	0.010447	5307	DP1061-14	82.908	52.849			NaN	NaN	NaN	0	0	Median	0	0	0	871	155	816	1833	4254	4254		1	9606
IQEQESSGEEDSDLSPEEREK	1	1	Unmodified	2420.0463	0.046300668	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4	0				1		13.933	13.933	3	0.0055995	4215	DP1061-14	95.414	72.241			NaN	NaN	NaN	0	0	Median	1408400	0	1408400	872	155	817	1834	4255	4255		1	9606
IQFPIEMSMPWILTDHILETK	1	0	2 Oxidation (M)	2573.291	0.29096857	353	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	yes	no	0	2	0	5	0					1	13.898	13.898	3	0.022338	4229	DP1061-15	58.864	32.104			NaN	NaN	NaN	0	0	Median	0	0	0	873	353	818	1835	4256	4256	374;375	1	9606
IQHQDWTGGK	1	0	Unmodified	1168.5625	0.56252048	4	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3	0			1			12.65	12.65	2	0.014961	2819	DP1061-13	112.11	65.113		+	NaN	NaN	NaN	0	0	Median	7399400	7399400	0	874	4	819	1836	4257;4258	4257		2	
IQLIFER	0	1	Unmodified	917.53345	0.53345218	314	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				18.982	18.982	2	0.033021	7901	DP1061-12	90.777	16.802			NaN	NaN	NaN	0	0	Median	6854400	0	6854400	875	314	820	1837	4259;4260	4260		2	9606
IQQAAYVPSEQDDR	0	1	Unmodified	1618.7587	0.75871368	468				yes	yes	0	0	0	4	0				1		17.754	17.754	3	0.0088171	7848	DP1061-14	82.774	33.531	+		NaN	NaN	NaN	0	0	Median	2906500	0	2906500	876	468	821	1838	4261;4262	4261		2	9606
IQSTALR	0	1	Unmodified	787.4552	0.45520186	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					12.523	12.523	2	1.0317E-05	2049	DP1061-11	117.93	62.493			1.0212	1.1043	NaN	1	0	Median	2368600	1171400	1197200	877	287	822	1839	4263;4264;4265	4264		3	9606
IQSTALRGEK	1	1	Unmodified	1101.6142	0.6142217	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				12.397	12.397	2	1.4048E-07	1869	DP1061-11	125.71	39.851			1.0402	1.0951	8.6282	2	0	Median	44010000	21338000	22672000	878	287	823	1840;1841	4266;4267;4268;4269	4267		4	9606
IQTQPGYANTLR	0	1	Unmodified	1360.7099	0.709913	265	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	3	1.41	1			2		15.329	15.329	2	2.2981E-31	5455	DP1061-14	157.66	112.8			1.5644	1.5984	NaN	1	0	Median	28836000	11878000	16958000	879	265	824	1842;1843;1844	4270;4271;4272;4273;4274;4275;4276;4277;4278	4271		9	9606
IQVRLGEHNIDVLEGNEQFINAAK	1	1	Unmodified	2706.4089	0.40892695	5	CON__P00761			yes	yes	0	0	1	2	0		1				19.48	19.48	3	5.5595E-12	8469	DP1061-12	128.4	95.164		+	NaN	NaN	NaN	0	0	Median	6708100	6708100	0	880	5	825	1845	4279;4280;4281;4282	4281		4	
IREEYPDR	0	2	Unmodified	1076.5251	0.52507234	253;77;305;335	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	1	3	0			1			12.473	12.473	2	1.7446E-05	2572	DP1061-13	123.98	56.99			1.5728	1.6047	NaN	1	0	Median	113500000	40387000	73109000	881	77;253;305;335	826	1846	4283;4284	4284		2	9606
IRGPEESQPPQLYAADEEEAPGTRDPTR	0	3	Unmodified	3108.4748	0.47483427	341	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	2	4	0				1		16.151	16.151	4	0.0016496	6170	DP1061-14	72.302	56.288			NaN	NaN	NaN	0	0	Median	3792500	0	3792500	882	341	827	1847	4285	4285		1	9606
IRLENEIQTYR	0	2	Unmodified	1433.7627	0.76267685	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3.67	1.89	1				2	16.278	16.278	2;3	0.012169	6188	DP1061-15	73.435	43.63		+	NaN	NaN	NaN	0	0	Median	53646000	53646000	0	883	15	828	1848;1849;1850	4286;4287;4288;4289	4288		4	9606
ISEQFTAMFR	0	1	Oxidation (M)	1244.586	0.58595803	253;77;305;297	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	4	0				1		17.668	17.668	2	0.02607	7741	DP1061-14	56.916	34.679			1.6337	1.6692	NaN	1	0	Median	5576900	1739100	3837900	884	77;253;305;297	829	1851	4290;4291	4290	95	2	9606
ISGLIYEETR	0	1	Unmodified	1179.6136	0.61355299	231	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					3	17.447	17.447	2	1.439E-20	7135	DP1061-15	155.58	107.02			1.5708	1.4754	NaN	1	0	Median	193970000	81827000	112150000	885	231	830	1852;1853;1854	4292;4293;4294;4295;4296;4297;4298	4294		7	9606
ISLGLPVGAVINCADNTGAK	1	0	Unmodified	1969.0303	0.030260856	232	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	20.755	20.755	2	7.3814E-76	11095	DP1061-15	191.63	191.63			1.4214	1.2697	NaN	1	0	Median	20329000	8616000	11713000	886	232	831	1855	4299;4300;4301;4302;4303;4304;4305	4301		7	9606
ISLLLDPGSFVESDMFVEHR	0	1	Oxidation (M)	2306.1253	0.12528345	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		22.263	22.263	2;3	2.1627E-19	13765	DP1061-13	121.77	106.35			1.0171	1.0379	2.5943	2	0	Median	98996000	45758000	53238000	887	68	832	1856;1857;1858	4306;4307;4308;4309;4310;4311;4312;4313;4314;4315;4316	4307	88	11	9606
ISLLLDPGSFVESDMFVEHR	0	1	Unmodified	2290.1304	0.13036883	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			23.299	23.299	3	3.3703E-29	15136	DP1061-13	141.18	141.18			0.71987	0.73326	NaN	1	0	Median	5172000	2902900	2269100	888	68	832	1859	4317	4317		0	9606
ISSLLEEQFQQGK	1	0	Unmodified	1505.7726	0.77257283	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	18.302	18.302	2	7.283700000000001E-83	8463	DP1061-15	210.08	151.48			1.7379	1.5525	NaN	1	0	Median	12078000	4717900	7360400	889	212	833	1860	4318;4319	4319		2	9606
ISTLTIEEGNLDIQRPK	1	1	Unmodified	1926.0422	0.042205751	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	3.5	0.5			2	2		17.905	17.905	2;3	1.1434E-59	7883	DP1061-14	232.5	168.38			NaN	NaN	NaN	0	0	Median	474680000	0	474680000	890	285	834	1861;1862;1863;1864	4320;4321;4322;4323;4324;4325;4326;4327	4325		8	9606
ISVMGGEQAANVLATITK	1	0	Oxidation (M)	1817.9557	0.95569893	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.1	0.3			9	1		23.525	23.525	2;3	4.8044000000000005E-70	16304	DP1061-13	193.45	193.45			0.90641	0.93343	2.8805	6	0	Median	777860000	395280000	382580000	891	417	835	1865;1866;1867;1868;1869;1870;1871;1872;1873;1874	4328;4329;4330;4331;4332;4333;4334;4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364;4365	4337	425	38	9606
ISVMGGEQAANVLATITK	1	0	Unmodified	1801.9608	0.96078431	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.442	21.442	2	5.1774E-100	12815	DP1061-13	209.39	209.39			0.99602	1.0257	NaN	1	0	Median	135000000	69399000	65606000	892	417	835	1875;1876	4366;4367;4368;4369	4367		4	9606
ISVYYNEATGGK	1	0	Unmodified	1300.6299	0.62993134	77	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			1			15.954	15.954	2	4.9306E-24	6239	DP1061-13	154.85	113.97			1.6296	1.6782	NaN	1	0	Median	58831000	22398000	36433000	893	77	836	1877	4370;4371;4372	4370		3	9606
ITADGAHFELR	0	1	Unmodified	1228.62	0.62003536	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				16.256	16.256	3	0.0022269	5208	DP1061-12	103.08	44.385			NaN	NaN	NaN	0	0	Median	19952000	0	19952000	894	361	837	1878	4373;4374	4373		2	9606
ITAEEMYDIFGK	1	0	Oxidation (M)	1431.6592	0.65918256	450	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	1	0	5	0					1	19.05	19.05	2	0.00070445	9195	DP1061-15	107.24	61.115			NaN	NaN	NaN	0	0	Median	27653000	0	27653000	895	450	838	1879	4375;4376	4376	446	2	9606
ITAEEMYDIFGK	1	0	Unmodified	1415.6643	0.66426794	450	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	21.614	21.614	2	6.7122E-05	12014	DP1061-15	134.68	87.88			NaN	NaN	NaN	0	0	Median	17798000	0	17798000	896	450	838	1880	4377;4378	4377		2	9606
ITDIIGK	1	0	Unmodified	758.4538	0.45380487	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	4					15.12	15.12	2	0.0063224	4098	DP1061-11	128.38	9.1611			NaN	NaN	NaN	0	0	Median	0	0	0	897	287	839	1881;1882;1883;1884	4379;4380;4381;4382	4381		4	9606
ITDIIGKEEGIGPENLR	1	1	Unmodified	1852.9894	0.9894419	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0.784	4	5	4			19.526	19.526	2;3	8.2878E-83	6435	DP1061-11	201.3	201.3			0.82948	0.86817	4.7286	9	0	Median	414930000	222980000	191960000	898	287	840	1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897	4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418;4419;4420	4393		38	9606
ITGEAFVQFASQELAEK	1	0	Unmodified	1866.9363	0.9363437	192	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3.5	0.5			1	1		22.353	22.353	2	9.0534E-10	13921	DP1061-13	135.58	80.811			NaN	NaN	NaN	0	0	Median	10890000	0	10890000	899	192	841	1898;1899	4421;4422;4423	4421		3	9606
ITITNDQNR	0	1	Unmodified	1073.5465	0.54653606	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			13.066	13.066	2	7.4432E-14	3182	DP1061-13	186.3	119.31			NaN	NaN	NaN	0	0	Median	21290000	0	21290000	900	87	842	1900	4424;4425;4426	4424		3	9606
ITLETDEDMVTEIR	0	1	Oxidation (M)	1679.7924	0.79238157	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	1.67	0.471	1	2				18.163	18.163	2	1.3124E-08	6962	DP1061-12	140.39	70.291			NaN	NaN	NaN	0	0	Median	11537000	0	11537000	901	321	843	1901;1902;1903	4427;4428;4429;4430;4431;4432;4433;4434	4432	346	8	9606
ITLIIGGSYGAGNYGMCGR	0	1	Oxidation (M)	1974.9292	0.9291666	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.659	19.659	2	6.8668E-36	10550	DP1061-13	155.66	139.57			0.96457	0.98557	NaN	1	0	Median	42197000	19845000	22353000	902	417	844	1904	4435;4436;4437;4438;4439	4436	426	5	9606
ITPSYVAFTPEGER	0	1	Unmodified	1565.7726	0.77257283	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			18.421	18.421	2	0.00040814	9027	DP1061-13	105.2	69.493			NaN	NaN	NaN	0	0	Median	14763000	0	14763000	903	87	845	1905	4440;4441	4441		2	9606
ITSEAEDLVANFFPK	1	0	Unmodified	1679.8407	0.8406524	204	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		23.126	23.126	2	1.8384E-09	13191	DP1061-14	144.17	111.13			NaN	NaN	NaN	0	0	Median	3429900	0	3429900	904	204	846	1906	4442;4443	4442		2	9606
ITSENPDEGFKPSSGTVQELNFR	1	1	Unmodified	2551.2191	0.2190605	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1.82	1.04	9	4	2	2		20.872	20.872	2;3	1.7623999999999997E-195	6540	DP1061-11	272.95	272.95			0.77842	0.81948	4.5223	8	0	Median	762340000	418030000	344310000	905	287;26	847	1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923	4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498	4453		55	9606
IVAERPGTNSTGPAPMAPPR	0	2	Oxidation (M)	2034.0317	0.031657839	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	1	2.33	0.471		2	1			14.225	14.225	3	0.010305	3933	DP1061-12	74.744	44.005			NaN	NaN	NaN	0	0	Median	19018000	0	19018000	906	292	848	1924;1925;1926	4499;4500;4501;4502	4501	320	4	9606
IVAERPGTNSTGPAPMAPPR	0	2	Unmodified	2018.0367	0.036743217	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	2	0		1				15.115	15.115	3	0.013544	4409	DP1061-12	75.743	45.636			NaN	NaN	NaN	0	0	Median	0	0	0	907	292	848	1927	4503	4503		1	9606
IVALNAHTFLR	0	1	Unmodified	1253.7244	0.72444085	112	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	no	no	0	0	0	4	0				1		17.632	17.632	3	1.7275E-37	7633	DP1061-14	169.76	141.05			1.389	1.4192	NaN	1	0	Median	12128000	4476100	7652400	908	112	849	1928	4504;4505	4504		2	9606
IVALSSSLSNAK	1	0	Unmodified	1188.6714	0.67140222	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.285	16.285	2	0.00035224	4865	DP1061-11	103.26	64.464			NaN	NaN	NaN	0	0	Median	3405100	0	3405100	909	48	850	1929	4506	4506		1	9606
IVDDLKDEAEQYR	1	1	Unmodified	1592.7682	0.76821574	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		2				16.43	16.43	2;3	4.3035E-25	5361	DP1061-12	195.27	141.3			NaN	NaN	NaN	0	0	Median	24297000	0	24297000	910	46	851	1930;1931	4507;4508;4509;4510	4508		4	9606
IVDDLKDEAEQYRK	2	1	Unmodified	1720.8632	0.86317875	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	2	2.5	0.5		1	1			15.438	15.438	3	6.3578E-10	4654	DP1061-12	148.89	110.55			NaN	NaN	NaN	0	0	Median	48672000	0	48672000	911	46	852	1932;1933	4511;4512;4513	4512		3	9606
IVEPYIAWGYPNLK	1	0	Unmodified	1661.8817	0.88172935	104	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		21.688	21.688	2	8.8609E-14	11920	DP1061-14	123.86	35.183			1.7021	1.6257	NaN	1	0	Median	10249000	3070200	7178600	912	104	853	1934	4514;4515;4516;4517	4516		4	9606
IVGDLAQFMVQNGLSR	0	1	Oxidation (M)	1762.9036	0.90360378	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.67	0.943		2		1		19.893	19.893	2	7.9713E-22	8857	DP1061-12	139.48	139.48			0.95088	1.0007	2.3127	2	0	Median	167470000	88751000	78722000	913	89	854	1935;1936;1937	4518;4519;4520;4521;4522;4523;4524	4519	129	7	9606
IVGDLAQFMVQNGLSR	0	1	Unmodified	1746.9087	0.90868916	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.894		2	1	2		22.183	22.183	2;3	2.5067E-128	11477	DP1061-12	245.5	245.5			0.92168	0.94403	4.0404	4	0	Median	299630000	149970000	149660000	914	89	854	1938;1939;1940;1941;1942	4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542	4528		18	9606
IVILDEADSMTSAAQAALR	0	1	Oxidation (M)	1990.0041	0.004105685	137	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	1	0	4	0				2		19.393	19.393	2	0.0012325	9532	DP1061-14	102.9	54.9			NaN	NaN	NaN	0	0	Median	0	0	0	915	137	855	1943;1944	4543;4544	4543	173	2	9606
IVILEYQPSK	1	0	Unmodified	1188.6754	0.67542497	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					18.129	18.129	2	0.014907	6562	DP1061-11	116.05	75.022			NaN	NaN	NaN	0	0	Median	12862000	0	12862000	916	321	856	1945	4545	4545		1	9606
IVPGQFLAVDPK	1	0	Unmodified	1282.7285	0.72852317	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					19.317	19.317	2	0.012807	7801	DP1061-11	83.862	83.862			NaN	NaN	NaN	0	0	Median	16918000	0	16918000	917	321	857	1946	4546;4547	4546		2	9606
IVQAEGEAEAAK	1	0	Unmodified	1214.6143	0.61428128	396	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		12.737	12.737	2	5.8144E-07	2894	DP1061-14	107.24	68.222			0.89825	0.85793	NaN	1	0	Median	5710900	2681900	3029000	918	396	858	1947	4548;4549;4550;4551	4549		4	9606
IVQMTEAEVR	0	1	Oxidation (M)	1190.5965	0.59652272	211	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	1	0	4	0				1		13.094	13.094	2	0.025056	3220	DP1061-14	96.331	59.997			NaN	NaN	NaN	0	0	Median	31847000	0	31847000	919	211	859	1948	4552	4552	233	1	9606
IVQMTEAEVR	0	1	Unmodified	1174.6016	0.6016081	211	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	4	0				2		15.322	15.322	2	0.012707	5476	DP1061-14	89.029	41.426			NaN	NaN	NaN	0	0	Median	13669000	0	13669000	920	211	859	1949;1950	4553;4554	4553		2	9606
IVQQAKEMTETMEKK	3	0	2 Oxidation (M)	1824.8961	0.89613514	455	Q9Y4I1	MYO5A	Unconventional myosin-Va	yes	yes	0	2	2	3	0			1			12.536	12.536	2	0.033188	2667	DP1061-13	60.102	8.8505			NaN	NaN	NaN	0	0	Median	2924100	2924100	0	921	455	860	1951	4555	4555	454;455	1	9606
IVQQIAILMGCAILPHLR	0	1	Unmodified	2045.1642	0.16419234	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				23.522	23.522	3	4.9583E-06	13233	DP1061-12	117.4	72.26			NaN	NaN	NaN	0	0	Median	7679500	0	7679500	922	46	861	1952	4556;4557;4558	4558		3	9606
IVVNLTGR	0	1	Unmodified	870.5287	0.52870115	213	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	16.096	16.096	2	0.023816	6140	DP1061-15	104.21	34.825			NaN	NaN	NaN	0	0	Median	8731000	0	8731000	923	213	862	1953	4559;4560	4560		2	9606
IWDPTPSHTPAGAATPGR	0	1	Unmodified	1830.9013	0.90129559	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				15.736	15.736	3	0.017152	4793	DP1061-12	78.501	45.978			NaN	NaN	NaN	0	0	Median	19337000	0	19337000	924	46	863	1954	4561;4562	4562		2	9606
IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR	0	2	Unmodified	3545.6785	0.67845331	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		3				14.473	14.473	5;6	0.010023	3751	DP1061-12	38.988	16.265			NaN	NaN	NaN	0	0	Median	35782000	0	35782000	925	46	864	1955;1956;1957	4563;4564;4565;4566;4567;4568	4564		6	9606
IWDTASGQCLK	1	0	Unmodified	1277.6074	0.60742176	208	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	4	0				1		16.23	16.23	2	0.0097877	6262	DP1061-14	93.598	50.474			NaN	NaN	NaN	0	0	Median	0	0	0	926	208	865	1958	4569	4569		1	9606
IWSVPNASCVQVVR	0	1	Unmodified	1613.8348	0.83479593	436	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	3	0			1			19.198	19.198	2	9.2554E-05	9958	DP1061-13	112.13	78.717			NaN	NaN	NaN	0	0	Median	14876000	0	14876000	927	436	866	1959	4570;4571	4570		2	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Oxidation (M)	2640.3006	0.30062206	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.1	0.3			9	1		23.927	23.927	2;3	3.2254E-28	10591	DP1061-13	132.76	121.35			0.66029	0.67026	12.229	3	0	Median	346540000	208310000	138230000	928	395	867	1960;1961;1962;1963;1964;1965;1966;1967;1968;1969	4572;4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598	4575	407	27	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Unmodified	2624.3057	0.30570743	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			20.848	20.848	2;3	7.817000000000001E-29	12035	DP1061-13	140.47	140.47			0.67665	0.68882	NaN	1	0	Median	131430000	76233000	55194000	929	395	867	1970;1971	4599;4600;4601;4602;4603;4604;4605	4601		7	9606
IYGFYDECK	1	0	Unmodified	1193.5063	0.50631073	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.67	0.471			1	2		18.147	18.147	2	0.010855	7785	DP1061-14	131.06	113.08			NaN	NaN	NaN	0	0	Median	109080000	0	109080000	930	142;210;211	868	1972;1973;1974	4606;4607;4608;4609;4610;4611	4608		6	9606
IYGFYDECKR	1	1	Unmodified	1349.6074	0.60742176	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			1	1		16.221	16.221	3	0.0049307	6522	DP1061-13	93.667	74.857			NaN	NaN	NaN	0	0	Median	48970000	0	48970000	931	142;210;211	869	1975;1976	4612;4613;4614;4615	4613		4	9606
IYGLGSLALYEK	1	0	Unmodified	1325.7231	0.72310344	140	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		20.657	20.657	2	1.5426E-41	10845	DP1061-14	169.93	82.754			1.0717	1.0236	NaN	1	0	Median	12268000	5701300	6567200	932	140	870	1977	4616	4616		1	9606
IYNDDKNTYIR	1	1	Unmodified	1413.6888	0.6888432	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				14.323	14.323	3	0.0056341	3644	DP1061-12	121.36	89.031			NaN	NaN	NaN	0	0	Median	29448000	0	29448000	933	46	871	1978	4617	4617		1	9606
IYNSIYIGSQDALIAHYPR	0	1	Unmodified	2193.1219	0.12185306	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				19.807	19.807	3	1.1963999999999999E-23	8734	DP1061-12	169.64	134.54			NaN	NaN	NaN	0	0	Median	15468000	0	15468000	934	46	872	1979	4618;4619	4618		2	9606
IYVENLIDCLNEK	1	0	Unmodified	1621.8022	0.8021584	98	P16383	GCFC2	GC-rich sequence DNA-binding factor 2	yes	yes	0	0	0	2	0		1				20.363	20.363	2	0.0091354	9435	DP1061-12	67.563	6.2095			1.0363	1.0889	NaN	1	0	Median	15784000	6837000	8946500	935	98	873	1980	4620;4621;4622;4623;4624	4622		5	9606
IYVSANSGAR	0	1	Unmodified	1036.5302	0.53015772	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.25	0.829	1	1	2			13.361	13.361	2	3.2173E-08	3570	DP1061-12	123.72	68.944			0.94824	0.97126	6.0253	2	0	Median	543030000	275120000	267910000	936	287	874	1981;1982;1983;1984	4625;4626;4627;4628;4629;4630;4631;4632;4633;4634	4631		10	9606
KAALDEAQGVGLDSTGYYDQEIYGGSDSR	1	1	Unmodified	3064.3898	0.38976723	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				18.967	18.967	3	7.5279E-16	7780	DP1061-12	130.25	109.54			NaN	NaN	NaN	0	0	Median	15169000	0	15169000	937	46	875	1985	4635;4636;4637;4638	4637		4	9606
KAEVNTIPGFDGVVK	2	0	Unmodified	1572.8512	0.8511575	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			2			17.297	17.297	2;3	0.0013234	7664	DP1061-13	67.102	67.102			0.89735	0.90569	5.4551	2	0	Median	68585000	35773000	32812000	938	67	876	1986;1987	4639;4640;4641;4642	4642		4	9606
KAEVNTIPGFDGVVKDAEEAVR	2	1	Unmodified	2343.207	0.20703925	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	3	0			2			19.734	19.734	3;4	4.2263E-07	10881	DP1061-13	118.76	99.839			0.75116	0.76026	NaN	1	0	Median	55486000	16182000	39304000	939	67	877	1988;1989	4643;4644;4645;4646;4647;4648	4648		6	9606
KALAAAGYDVEK	2	0	Unmodified	1234.6558	0.65575216	99	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	1	4	0				1		13.704	13.704	2	0.0077575	3886	DP1061-14	70.488	25.12			1.11	1.2303	NaN	1	0	Median	3557700	1948100	1609600	940	99	878	1990	4649;4650	4649		2	9606
KALAAAGYDVEKNNSR	2	1	Unmodified	1705.8747	0.87474649	99	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	2	4	0				1		12.95	12.95	3	0.0048758	3222	DP1061-14	89.506	56.359			NaN	NaN	NaN	0	0	Median	1479700	0	1479700	941	99	879	1991	4651;4652	4651		2	9606
KASGPPVSELITK	2	0	Unmodified	1325.7555	0.7554662	99	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	1	4	0				2		15.182	15.182	3	0.040109	5331	DP1061-14	63.16	39.089			NaN	NaN	NaN	0	0	Median	15796000	0	15796000	942	99	880	1992;1993	4653;4654	4653		2	9606
KAYGGAYDVMSSK	2	0	Oxidation (M)	1391.6391	0.63911582	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3.33	0.471			2	1		12.852	12.852	2;3	1.205E-11	3001	DP1061-13	118.87	118.87			1.0656	1.0755	9.652	3	0	Median	120230000	55678000	64550000	943	68	881	1994;1995;1996	4655;4656;4657;4658;4659;4660;4661;4662;4663;4664;4665	4661	82	11	9606
KAYGGAYDVMSSK	2	0	Unmodified	1375.6442	0.6442012	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			14.657	14.657	2;3	0.037919	5070	DP1061-13	83.137	51.54			1.0264	1.0359	NaN	1	0	Median	14294000	7225300	7069000	944	68	881	1997;1998	4666;4667	4666		1	9606
KAYVEANQMLGDLIK	2	0	Oxidation (M)	1707.8866	0.88655673	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		2				17.399	17.399	2;3	1.8823E-14	6214	DP1061-12	123.28	82.112			0.8834	0.90366	6.146	2	0	Median	62866000	32031000	30835000	945	89	882	1999;2000	4668;4669;4670;4671;4672;4673;4674	4673	118	7	9606
KAYVEANQMLGDLIK	2	0	Unmodified	1691.8916	0.89164211	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				19.281	19.281	3	0.017625	8211	DP1061-12	59.634	25.838			NaN	NaN	NaN	0	0	Median	0	0	0	946	89	882	2001	4675	4675		1	9606
KDDPTLLSSGR	1	1	Unmodified	1187.6146	0.61461563	111	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	5	0					1	13.671	13.671	2	0.050444	4005	DP1061-15	76.927	28.968			NaN	NaN	NaN	0	0	Median	2487700	2487700	0	947	111	883	2002	4676	4676		1	9606
KEDVNLMMSSGQILGIR	1	1	2 Oxidation (M)	1921.9601	0.96013238	41	O43829	ZBTB14	Zinc finger and BTB domain-containing protein 14	yes	yes	0	2	1	3	0			1			22.835	22.835	2	0.031725	14549	DP1061-13	43.382	16.411			0.80924	0.82952	NaN	1	0	Median	4566000	2311900	2254100	948	41	884	2003	4677	4677	38;39	1	9606
KEEEAVLVGGEWSPSLDGLDPQADPQVLVR	1	1	Unmodified	3232.6252	0.6251869	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	1	2	0		1				21.776	21.776	3	0.020566	11007	DP1061-12	57.825	25.929			NaN	NaN	NaN	0	0	Median	0	0	0	949	364	885	2004	4678	4678		1	9606
KEMSADVVCMSLANVPPGEQR	1	1	2 Oxidation (M)	2349.0763	0.076301125	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	2	1	1	0	1					16.411	16.411	3	0.024145	5042	DP1061-11	58.93	27.283			NaN	NaN	NaN	0	0	Median	0	0	0	950	321	886	2005	4679	4679	347;348	1	9606
KEMSADVVCMSLANVPPGEQR	1	1	Oxidation (M)	2333.0814	0.081386503	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	1	1	0	1					17.365	17.365	3	0.032454	5904	DP1061-11	55.453	37.437			NaN	NaN	NaN	0	0	Median	0	0	0	951	321	886	2006	4680	4680	347;348	1	9606
KESYSIYVYK	2	0	Unmodified	1278.6496	0.64960415	75	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	5	0					1	15.781	15.781	2	2.0782E-08	5855	DP1061-15	125.75	125.75			1.4614	1.4986	NaN	1	0	Median	13605000	5252300	8352700	952	75	887	2007	4681;4682;4683;4684	4683		4	9606
KFEEEGNPYYSSAR	1	1	Unmodified	1675.7478	0.74781464	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.45	0.656			7	3	1	15.035	15.035	2;3	4.6372E-108	5430	DP1061-13	228.62	177.36			0.79198	0.81183	24.374	5	0	Median	358430000	200220000	158210000	953	417	888	2008;2009;2010;2011;2012;2013;2014;2015;2016;2017;2018	4685;4686;4687;4688;4689;4690;4691;4692;4693;4694;4695;4696;4697;4698;4699;4700;4701;4702;4703;4704;4705;4706;4707;4708	4687		23	9606
KFGDPVVQSDMK	2	0	Oxidation (M)	1365.6599	0.65985126	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			13.846	13.846	2	0.036755	4077	DP1061-13	61.213	14.823			NaN	NaN	NaN	0	0	Median	6488000	0	6488000	954	85	889	2019	4709	4709	110	1	9606
KGHAVGDIPGVR	1	1	Unmodified	1204.6677	0.66765425	216	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	1	5	0					1	13.096	13.096	3	0.015847	3460	DP1061-15	42.629	27.039			1.0832	1.0404	NaN	1	0	Median	7755700	3715900	4039800	955	216	890	2020	4710	4710		1	9606
KGLTPSQIGVILR	1	1	Unmodified	1380.8453	0.84528426	219	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	17.735	17.735	3	0.0079444	7949	DP1061-15	55.105	35.463			1.1501	1.1046	NaN	1	0	Median	6671200	2938300	3732900	956	219	891	2021	4711	4711		1	9606
KGTDIMYTGTLDCWR	1	1	Oxidation (M)	1831.8233	0.82330455	66	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	1	4	0				1		17.739	17.739	3	2.6902E-06	7762	DP1061-14	90.853	79.808			1.1662	1.1763	NaN	1	0	Median	5657200	2751300	2905900	957	66	892	2022	4712;4713	4713	69	2	9606
KGTHFVQLCCQR	1	1	Unmodified	1532.734	0.73403603	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			13.697	13.697	3	3.3252E-32	3871	DP1061-13	148.78	121.78			0.93742	0.96091	NaN	1	0	Median	100190000	54268000	45921000	958	417	893	2023	4714;4715	4714		2	9606
KIAFAITAIK	2	0	Unmodified	1074.6801	0.68011642	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					1	17.17	17.17	2	0.031487	7304	DP1061-15	63.184	31.424			1.4573	1.4945	NaN	1	0	Median	8467800	3424800	5043000	959	217	894	2024	4716	4716		1	9606
KIAPYVAHNFSK	2	0	Unmodified	1373.7456	0.74557022	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.5	0.5		1	1			14.079	14.079	3	3.1323E-05	3638	DP1061-12	92.792	92.792			0.73536	0.7472	10.638	2	0	Median	59873000	32769000	27104000	960	89	895	2025;2026	4717;4718;4719;4720;4721;4722;4723	4718		7	9606
KIEEIKDFLLTAR	2	1	Unmodified	1574.9032	0.90319307	247	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	2	5	0					1	18.669	18.669	3	3.6372E-12	8884	DP1061-15	125.61	125.61			1.0762	1.1112	NaN	1	0	Median	10705000	5440100	5265300	961	247	896	2027	4724;4725;4726;4727	4727		4	9606
KIEQELTAAK	2	0	Unmodified	1129.6343	0.63428844	410	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	1	4	0				1		13.001	13.001	2	0.029929	3178	DP1061-14	85.533	33.584			NaN	NaN	NaN	0	0	Median	1781000	0	1781000	962	410	897	2028	4728	4728		1	9606
KIGEEEIQKPEEK	3	0	Unmodified	1555.8094	0.80935227	328	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	2	2	0		1				12.609	12.609	3	2.652E-05	2472	DP1061-12	121.18	85.183			NaN	NaN	NaN	0	0	Median	3092500	0	3092500	963	328	898	2029	4729;4730;4731	4731		3	9606
KIHNANPELTDGQIQAMLR	1	1	Oxidation (M)	2164.1059	0.10588542	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					15.99	15.99	3;4	1.8124E-09	4641	DP1061-11	102.03	102.03			0.83938	0.88881	5.1218	2	0	Median	23935000	13654000	10281000	964	287	899	2030;2031	4732;4733;4734;4735;4736;4737;4738;4739	4739	286	8	9606
KIVDQIRPDR	1	2	Unmodified	1238.7095	0.70951906	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	no	no	0	0	2	3	0			1			13.116	13.116	3	0.042933	3323	DP1061-13	48.091	18.54			3.4715	3.6333	NaN	1	0	Median	19955000	4492100	15463000	965	102	900	2032	4740	4740		1	9606
KLDVTIEPSEEPLFPADELYGIVGANLK	2	0	Unmodified	3056.5958	0.59578425	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			23.599	23.599	3	8.2453E-15	15532	DP1061-13	104.89	95.427			0.61833	0.62407	NaN	1	0	Median	9523000	5030000	4493000	966	417	901	2033	4741;4742;4743;4744;4745;4746;4747	4746		7	9606
KLGVQTVAVYSEADR	1	1	Unmodified	1634.8628	0.86278482	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		16.159	16.159	2;3	1.5656E-14	6421	DP1061-13	96.208	96.208			0.8954	0.91784	7.0328	3	0	Median	92100000	44415000	47685000	967	395	902	2034;2035;2036	4748;4749;4750;4751;4752;4753;4754;4755	4750		8	9606
KLHYNEGLNIK	2	0	Unmodified	1327.7248	0.72483478	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4	0				1		14.248	14.248	3	0.0017367	4428	DP1061-14	99.752	64.997			NaN	NaN	NaN	0	0	Median	12060000	0	12060000	968	155	903	2037	4756;4757	4756		2	9606
KLLMMAGIDDCYTSAR	1	1	2 Oxidation (M)	1875.8529	0.85289012	97	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	1	4	0				1		15.994	15.994	3	3.5801E-10	5952	DP1061-14	104.21	104.21			1.4674	1.4801	NaN	1	0	Median	8164000	3577500	4586500	969	97	904	2038	4758;4759	4759	142;143	2	9606
KLSSWDQAETPGHTPSLR	1	1	Unmodified	2008.9967	0.99665254	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		2				15.85	15.85	3;4	0.00030269	4832	DP1061-12	109.77	88.237			NaN	NaN	NaN	0	0	Median	47492000	0	47492000	970	46	905	2039;2040	4760;4761;4762;4763;4764;4765;4766;4767	4760		8	9606
KNFYFLEMNTR	1	1	Oxidation (M)	1477.7024	0.70238478	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			1			17.203	17.203	3	1.8673E-05	7637	DP1061-13	101.39	101.39			1.0535	1.0799	NaN	1	0	Median	29419000	15889000	13530000	971	67	906	2041	4768;4769;4770	4769	74	3	9606
KPGYHAPVALLNDIPQSTEQYDPFAEHRPPK	2	1	Unmodified	3514.7634	0.76335213	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	2	2	0		1				19.093	19.093	5	0.0021106	8032	DP1061-12	56.903	33.711			NaN	NaN	NaN	0	0	Median	10314000	0	10314000	972	46	907	2042	4771;4772	4772		2	9606
KPITTGGVTYR	1	1	Unmodified	1191.6612	0.66117189	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	4	0				2		13.056	13.056	2;3	7.9431E-09	3264	DP1061-14	125.68	96.306			0.88935	0.89706	NaN	1	0	Median	18994000	4325000	14669000	973	307	908	2043;2044	4773;4774;4775;4776;4777	4775		5	9606
KPLPDHVSIVEPK	2	0	Unmodified	1457.8242	0.82421447	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		14.643	14.643	3	0.00032054	4797	DP1061-14	79.744	64.242			1.183	1.3113	NaN	1	0	Median	7696000	3874700	3821300	974	117	909	2045	4778;4779;4780	4779		3	9606
KPLPDHVSIVEPKDEILPTTPISEQK	3	0	Unmodified	2909.575	0.57498923	117	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	4	0				1		17.463	17.463	4	0.0014878	7632	DP1061-14	51.398	51.398			0.83545	0.92264	NaN	1	0	Median	10426000	4668200	5757400	975	117	910	2046	4781;4782;4783	4783		3	9606
KQGTIFLAGPPLVK	2	0	Unmodified	1467.8813	0.88133542	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			1	1		18.067	18.067	2;3	0.0017937	8592	DP1061-13	97.779	88.092			0.78236	0.82748	9.6452	2	0	Median	42798000	24452000	18346000	976	417	911	2047;2048	4784;4785;4786;4787;4788;4789	4785		6	9606
KQVNYEVDR	1	1	Unmodified	1149.5778	0.57783619	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				12.488	12.488	2	3.1445E-16	2026	DP1061-11	143.04	106.48			0.85179	0.90195	NaN	1	0	Median	20728000	13771000	6956900	977	287	912	2049;2050	4790;4791;4792;4793;4794;4795	4792		6	9606
KQVNYEVDRR	1	2	Unmodified	1305.6789	0.67894722	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					12.397	12.397	3	0.00058338	1841	DP1061-11	93.598	62.311			0.87069	0.78523	NaN	1	0	Median	227850000	121400000	106440000	978	287	913	2051	4796;4797;4798	4797		3	9606
KRVEGPGSLGLEESGSR	1	2	Unmodified	1756.9068	0.9067749	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	2	3.25	0.433			3	1		14.056	14.056	2;3;4	8.5273E-18	4304	DP1061-13	164.15	115.71			NaN	NaN	NaN	0	0	Median	202850000	0	202850000	979	285	914	2052;2053;2054;2055	4799;4800;4801;4802;4803;4804;4805	4804		7	9606
KSFNDDAMLIEK	2	0	Oxidation (M)	1425.681	0.68098063	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0			2			15.327	15.327	2;3	7.3638E-08	5528	DP1061-13	112.5	90.753			0.84544	0.85329	0.75939	2	0	Median	83684000	43129000	40555000	980	395	915	2056;2057	4806;4807;4808;4809;4810;4811;4812;4813;4814;4815	4813	408	10	9606
KSFNDDAMLIEK	2	0	Unmodified	1409.6861	0.68606601	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			2			16.294	16.294	2;3	0.010692	6758	DP1061-13	75.695	46.898			0.97339	0.98243	11.954	2	0	Median	23657000	12678000	10978000	981	395	915	2058;2059	4816;4817;4818;4819;4820;4821	4819		6	9606
KSGVSDHWALDDHHALHLTR	1	1	Unmodified	2294.1305	0.13046068	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			15.5	15.5	4;5	0.00033451	5855	DP1061-13	69.256	55.829			0.92725	0.95048	14.929	2	0	Median	57942000	27946000	29996000	982	417	916	2060;2061	4822;4823;4824;4825;4826	4825		5	9606
KTTHFVEGGDAGNREDQINR	1	2	Unmodified	2243.0679	0.067920004	104	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	4	0				1		12.774	12.774	4	0.0031903	2986	DP1061-14	57.171	42.476			1.8656	1.9777	NaN	1	0	Median	7318900	3203400	4115500	983	104	917	2062	4827;4828;4829	4828		3	9606
KTVTAMDVVYALKR	2	1	Oxidation (M)	1609.8862	0.8861628	231	P62805	HIST1H4A	Histone H4	yes	yes	0	1	2	5	0					1	16.582	16.582	3	0.00090477	6751	DP1061-15	71.344	53.007			1.5305	1.5802	NaN	1	0	Median	6212900	2793000	3419900	984	231	918	2063	4830;4831;4832;4833	4833	244	4	9606
KVGLIAAR	1	1	Unmodified	826.53887	0.53887191	243	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		12.893	12.893	2	0.044325	3057	DP1061-14	73.039	28.428			1.5924	1.6062	NaN	1	0	Median	10345000	3733500	6611800	985	243	919	2064	4834	4834		1	9606
KVNNADDFPNLFR	1	1	Unmodified	1548.7685	0.76849051	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.2	0.748	1	2	2			18.506	18.506	2;3	1.681E-17	7045	DP1061-11	135.02	135.02			0.82098	0.85927	7.8405	5	0	Median	301930000	161890000	140040000	986	287	920	2065;2066;2067;2068;2069	4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850;4851	4836		17	9606
KVPQVSTPTLVEVSR	1	1	Unmodified	1638.9305	0.93047046	11	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	1	3	0			1			16.595	16.595	3	0.00029152	6996	DP1061-13	108.36	84.761		+	NaN	NaN	NaN	0	0	Median	12454000	12454000	0	987	11	921	2070	4852;4853	4852		2	9606
LAAAEGLEPK	1	0	Unmodified	997.54441	0.5444108	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		14.71	14.71	2	0.044827	4974	DP1061-14	72.607	23.51			NaN	NaN	NaN	0	0	Median	2206200	0	2206200	988	155	922	2071	4854	4854		1	9606
LAADDFR	0	1	Unmodified	806.39227	0.39226725	15;6;13;72	P02533;CON__P02533;CON__P19012;CON__Q04695;Q04695;P19012;CON__A2A4G1;CON__Q6IFX2;CON__Q9QWL7;P08727;CON__P19001;CON__P08727;CON__Q9Z2K1;CON__P05784;CON__Q3ZAW8;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__P08730-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;P05783	KRT14;KRT17;KRT15;KRT19;KRT16;KRT10;KRT28;KRT18	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 18	no	no	0	0	0	3	1.41	1	1	1	1	1	15.208	15.208	2	0.0010537	4097	DP1061-11	106.42	46.121		+	0.065918	0.068699	NaN	1	0	Median	132040000	129990000	2049500	989	6;13;15;72	923	2072;2073;2074;2075;2076	4855;4856;4857;4858;4859;4860;4861;4862	4855		8	9606
LAAELNKFMLEK	2	0	Oxidation (M)	1421.7588	0.75883702	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			1			17.122	17.122	3	0.051748	7544	DP1061-13	59.198	19.281			NaN	NaN	NaN	0	0	Median	0	0	0	990	67	924	2077	4863	4863		1	9606
LACDVDQVTR	0	1	Unmodified	1175.5605	0.56047157	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.558	14.558	2	0.036265	3642	DP1061-11	77.379	37.377			NaN	NaN	NaN	0	0	Median	0	0	0	991	260	925	2078	4864	4864		1	9606
LAEAEETAR	0	1	Unmodified	988.48254	0.48253882	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				12.405	12.405	2	0.021289	2154	DP1061-12	95.502	29.151			NaN	NaN	NaN	0	0	Median	17816000	0	17816000	992	364	926	2079	4865	4865		1	9606
LAPDYDALDVANK	1	0	Unmodified	1403.6933	0.69325988	229	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	17.777	17.777	2	3.3123E-07	7921	DP1061-15	104.82	104.82			1.1915	1.0644	NaN	1	0	Median	19058000	7807900	11250000	993	229	927	2080	4866;4867	4867		2	9606
LAQQQAALLMQQEER	0	1	Oxidation (M)	1771.8887	0.888682	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	0	2	0		1				16.356	16.356	2	2.3215E-08	5339	DP1061-12	136.7	99.518			NaN	NaN	NaN	0	0	Median	5545200	0	5545200	994	296	928	2081	4868;4869	4868	326	2	9606
LASYLDK	1	0	Unmodified	808.43307	0.43306943	15;16;6;13	P02533;CON__P02533;CON__P19012;CON__Q04695;Q04695;P19012;CON__A2A4G1;CON__Q9QWL7;P08727;CON__P19001;CON__P08727;CON__P05784;CON__Q99456;Q99456;CON__P08779;P08779;CON__P13645;P13645;CON__P08730-1;CON__P35527;P35527	KRT14;KRT17;KRT15;KRT19;KRT12;KRT16;KRT10;KRT9	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 9	no	no	0	0	0	5	0					1	14.358	14.358	2	0.018331	4497	DP1061-15	101.69	33.293		+	NaN	NaN	NaN	0	0	Median	17286000	17286000	0	995	6;13;15;16	929	2082	4870;4871	4870		2	9606
LATQSNEITIPVTFESR	0	1	Unmodified	1904.9844	0.98435652	63	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	19.817	19.817	2	0.00040518	10091	DP1061-15	112.02	70.64			NaN	NaN	NaN	0	0	Median	3056000	0	3056000	996	63	930	2083	4872;4873	4873		2	9606
LAVMSMEMRK	1	1	3 Oxidation (M)	1242.577	0.57704961	454	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	3	1	4	0				1		19.704	19.704	2	0.042106	9867	DP1061-14	47.657	8.4045			NaN	NaN	NaN	0	0	Median	0	0	0	997	454	931	2084	4874	4874	451;452;453	1	9606
LAVNMVPFPR	0	1	Oxidation (M)	1158.6219	0.62194961	253;77;305;297;335	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		18.165	18.165	2	0.00019191	8250	DP1061-14	100.19	100.19			1.4446	1.4748	0.63328	2	0	Median	79723000	33684000	46038000	998	77;253;305;335;297	932	2085;2086	4875;4876;4877;4878;4879;4880;4881;4882;4883	4882	96	9	9606
LAVNMVPFPR	0	1	Unmodified	1142.627	0.62703499	253;77;305;297;335	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-3 chain	no	no	0	0	0	3	0			1			19.624	19.624	2	7.3712E-08	10518	DP1061-13	116.9	116.9			1.4708	1.5045	NaN	1	0	Median	30504000	13321000	17183000	999	77;253;305;335;297	932	2087	4884;4885;4886;4887;4888	4888		5	9606
LCNLEEGSPGSGTYTR	0	1	Unmodified	1739.7785	0.77846285	449	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	5	0					1	15.648	15.648	2	5.6851E-09	5749	DP1061-15	131.17	90.064			NaN	NaN	NaN	0	0	Median	5118500	0	5118500	1000	449	933	2088	4889;4890;4891	4890		3	9606
LCQIFSDLNATYR	0	1	Unmodified	1599.7715	0.77152697	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				20.155	20.155	2	0.00011544	9145	DP1061-12	113.63	52.939			NaN	NaN	NaN	0	0	Median	8797200	0	8797200	1001	28	934	2089	4892;4893	4892		2	9606
LDGEASINNR	0	1	Unmodified	1087.5258	0.52580062	56	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		13.213	13.213	2	0.008843	3488	DP1061-14	75.043	38.597			1.3288	1.3576	NaN	1	0	Median	2773600	1320900	1452700	1002	56	935	2090	4894	4894		1	9606
LDKAQIHDLVLVGGSTR	1	1	Unmodified	1821.0108	0.010846043	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			17.264	17.264	3	2.9319E-09	7668	DP1061-13	127.49	91.838			NaN	NaN	NaN	0	0	Median	12705000	0	12705000	1003	85	936	2091	4895;4896	4896		2	9606
LDKSQIHDIVLVGGSTR	1	1	Unmodified	1837.0058	0.005760665	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			2			16.812	16.812	3;4	0.021061	7199	DP1061-13	87.419	48.351			NaN	NaN	NaN	0	0	Median	18405000	0	18405000	1004	88	937	2092;2093	4897;4898	4897		2	9606
LDLLEEK	1	0	Unmodified	858.46985	0.46984887	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.057	17.057	2	0.0057521	5498	DP1061-11	98.418	0			0.88683	0.94408	NaN	1	0	Median	117110000	67568000	49538000	1005	287	938	2094;2095	4899;4900;4901;4902;4903	4899		5	9606
LDNASAFQGAVISPHYDSLLVK	1	0	Unmodified	2344.2063	0.20631097	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.1	0.539	1	7	2			24.284	24.284	2;3	1.8579E-92	9063	DP1061-12	223.68	223.68			0.83342	0.88143	19.182	4	0	Median	106910000	62968000	43941000	1006	89	939	2096;2097;2098;2099;2100;2101;2102;2103;2104;2105	4904;4905;4906;4907;4908;4909;4910;4911;4912;4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931	4909		28	9606
LDPGLIMEQVK	1	0	Oxidation (M)	1257.6639	0.663874	459	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	1	0	5	0					1	17.386	17.386	2	0.038764	7511	DP1061-15	82.261	29.779			NaN	NaN	NaN	0	0	Median	12080000	0	12080000	1007	459	940	2106	4932;4933	4933	456	2	9606
LDPGLIMEQVK	1	0	Unmodified	1241.669	0.66895938	459	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	5	0					1	19.657	19.657	2	0.011535	9975	DP1061-15	85.807	34.461			NaN	NaN	NaN	0	0	Median	3633900	0	3633900	1008	459	940	2107	4934;4935	4934		2	9606
LDPSIFESLQK	1	0	Unmodified	1275.6711	0.67106787	440	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			1			20.481	20.481	2	0.028807	11629	DP1061-13	76.1	22.933			NaN	NaN	NaN	0	0	Median	4027700	0	4027700	1009	440	941	2108	4936;4937	4937		2	9606
LDSVLLLSSMNLPGGELR	0	1	Oxidation (M)	1929.0241	0.024112846	304	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	1	0	4	0				1		21.662	21.662	2	1.2211E-09	11917	DP1061-14	135.91	98.486			NaN	NaN	NaN	0	0	Median	5007400	0	5007400	1010	304	942	2109	4938;4939	4939	332	2	9606
LDVGNFSWGSECCTR	0	1	Unmodified	1786.7403	0.7403032	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.859	19.859	2	0.027166	10173	DP1061-15	80.17	50.244			NaN	NaN	NaN	0	0	Median	2232400	2232400	0	1011	212	943	2110	4940	4940		1	9606
LDVSLPFVSR	0	1	Unmodified	1131.6288	0.62880913	309	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	2.5	0.5		1	1			20.865	20.865	2	0.015971	12158	DP1061-13	85.67	39.99			NaN	NaN	NaN	0	0	Median	3388000	0	3388000	1012	309	944	2111;2112	4941;4942;4943	4942		3	9606
LEAGEQYQIMIASVSGSLK	1	0	Oxidation (M)	2039.0245	0.024506776	118	P23467	PTPRB	Receptor-type tyrosine-protein phosphatase beta	yes	yes	0	1	0	5	0					1	21.358	21.358	2	0.018742	11743	DP1061-15	50.467	19.24			1.306	1.1667	NaN	1	0	Median	31690000	10354000	21336000	1013	118	945	2113	4944;4945	4945	161	2	9606
LECVEPNCR	0	1	Unmodified	1175.5063	0.50632751	262	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	0	5	0					1	13.498	13.498	2	0.0039607	3838	DP1061-15	96.253	80.591			0.82619	0.77601	NaN	1	0	Median	7255600	3895100	3360500	1014	262	946	2114	4946;4947;4948;4949	4949		4	9606
LEGLTDEINFLR	0	1	Unmodified	1418.7405	0.74054442	12	P05787;CON__P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3	0			1			21.538	21.538	2	4.3639E-11	12999	DP1061-13	123.63	46.434		+	1.5614	1.6011	NaN	1	0	Median	14443000	4777300	9665200	1015	12	947	2115	4950;4951;4952;4953	4950		4	9606
LELDDPSK	1	0	Unmodified	915.45493	0.45492709	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.92	14.92	2	0.00095187	3911	DP1061-11	106.36	67.55			0.94653	1.0076	NaN	1	0	Median	4689200	2526700	2162500	1016	26	948	2116	4954;4955	4955		2	9606
LENEIQTYR	0	1	Unmodified	1164.5775	0.57750184	15	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.6	1.5	1		1	1	2	15.232	15.232	2	7.9877E-14	4250	DP1061-11	185.72	116.54		+	NaN	NaN	NaN	0	0	Median	47045000	47045000	0	1017	15	949	2117;2118;2119;2120;2121	4956;4957;4958;4959;4960;4961;4962;4963;4964	4956		9	9606
LEPHKPQQIPIDSTVSFGASTR	1	1	Unmodified	2407.2496	0.24957276	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	3.43	0.495			4	3		20.054	20.054	2;3;4	1.7705E-10	6931	DP1061-13	127.5	102.59			NaN	NaN	NaN	0	0	Median	453700000	0	453700000	1018	285	950	2122;2123;2124;2125;2126;2127;2128	4965;4966;4967;4968;4969;4970;4971;4972;4973;4974;4975;4976;4977;4978;4979;4980;4981	4969		17	9606
LEQGGTADGLR	0	1	Unmodified	1115.5571	0.55710075	37	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				13.488	13.488	2	0.011194	3116	DP1061-12	100.02	21.247			NaN	NaN	NaN	0	0	Median	0	0	0	1019	37	951	2129	4982	4982		1	9606
LESENDEYER	0	1	Unmodified	1282.5313	0.53133951	52	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				13.254	13.254	2	0.025608	2936	DP1061-12	85.807	52.429			NaN	NaN	NaN	0	0	Median	0	0	0	1020	52	952	2130	4983	4983		1	9606
LEYKPIKK	3	0	Unmodified	1017.6223	0.62226719	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	2	2	0		1				12.4	12.4	2	0.00010155	2100	DP1061-12	113.41	79.239			0.75724	0.79923	NaN	1	0	Median	23600000	10221000	13380000	1021	89	953	2131	4984;4985	4984		2	9606
LFEGNALLR	0	1	Unmodified	1031.5764	0.57637963	166	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	18.282	18.282	2	0.019654	8398	DP1061-15	75.109	20.56			1.9429	1.8249	NaN	1	0	Median	11162000	3095500	8066400	1022	166	954	2132	4986;4987	4986		2	9606
LFEYGGFPPESNYLFLGDYVDR	0	1	Unmodified	2597.2115	0.21145592	210;142	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	4	0				1		24.647	24.647	2	0.0014437	14184	DP1061-14	98.694	78.855			NaN	NaN	NaN	0	0	Median	1281700	0	1281700	1023	142;210	955	2133	4988;4989;4990;4991	4991		4	9606
LFIGGLSFETTDESLR	0	1	Unmodified	1783.8992	0.89922991	82	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		22.132	22.132	2	3.1904E-10	12334	DP1061-14	144.57	93.127			NaN	NaN	NaN	0	0	Median	7200500	0	7200500	1024	82	956	2134	4992	4992		1	9606
LFIGGLSFETTEESLR	0	1	Unmodified	1797.9149	0.91487997	114	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		22.124	22.124	2	2.7479E-09	12408	DP1061-14	102.62	53.432			1.7617	1.8	NaN	1	0	Median	2795000	1255400	1539600	1025	114	957	2135	4993;4994	4993		2	9606
LFLQGPK	1	0	Unmodified	801.47487	0.47487467	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			16.457	16.457	2	0.0098706	6666	DP1061-13	94.669	64			0.98872	1.0285	6.3942	2	0	Median	169580000	84842000	84741000	1026	89	958	2136;2137	4995;4996;4997;4998	4998		4	9606
LFLVQLQEK	1	0	Unmodified	1116.6543	0.6542956	40	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	5	0					1	19.37	19.37	2	1.7487E-11	9597	DP1061-15	141.39	97.62			3.0262	2.7034	NaN	1	0	Median	15390000	4052200	11338000	1027	40	959	2138	4999;5000	4999		2	9606
LFQECCPHSTDR	0	1	Unmodified	1548.6449	0.64494625	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			13.561	13.561	3	0.0018036	3841	DP1061-13	94.191	63.123			NaN	NaN	NaN	0	0	Median	11367000	0	11367000	1028	209	960	2139	5001;5002	5001		2	9606
LFSMENWGGATFDVAMR	0	1	Oxidation (M)	1946.8655	0.86550371	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				21.76	21.76	2	1.3687E-16	10961	DP1061-12	119.21	109.68			0.8704	0.94349	NaN	1	0	Median	13750000	7859900	5890000	1029	89	961	2140	5003;5004;5005;5006;5007	5006	130;131	5	9606
LFSMENWGGATFDVAMR	0	1	2 Oxidation (M)	1962.8604	0.86041834	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	0	3	0			1			20.711	20.711	2	2.4148E-07	11953	DP1061-13	95.417	77.584			0.88663	0.90933	NaN	1	0	Median	13717000	7829500	5887800	1030	89	961	2141	5008;5009	5009	130;131	2	9606
LFVGGIKEDTEEHHLR	1	1	Unmodified	1878.9588	0.95881047	114	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				1		14.989	14.989	3	0.0018722	5169	DP1061-14	106.52	0			NaN	NaN	NaN	0	0	Median	2976800	0	2976800	1031	114	962	2142	5010;5011	5011		2	9606
LFVGNLPADITEDEFKR	1	1	Unmodified	1963.0051	0.005091963	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	2	0		1				20.356	20.356	3	0.00082963	9345	DP1061-12	103.6	72.643			NaN	NaN	NaN	0	0	Median	6735900	0	6735900	1032	116	963	2143	5012;5013	5013		2	9606
LFVTNDAATILR	0	1	Unmodified	1332.7402	0.74015049	183	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			19.581	19.581	2	0.0033092	10478	DP1061-13	94.297	60.336			NaN	NaN	NaN	0	0	Median	13364000	0	13364000	1033	183	964	2144	5014;5015	5014		2	9606
LGAGEGGEASVSPEK	1	0	Unmodified	1386.6627	0.66268803	295	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	0			1			13.63	13.63	2	0.032363	3845	DP1061-13	77.74	44.362			NaN	NaN	NaN	0	0	Median	3041000	0	3041000	1034	295	965	2145	5016	5016		1	9606
LGAVFNQVAFPLQYTPR	0	1	Unmodified	1920.0258	0.025767826	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0.816	1	1	1			22.208	22.208	2	1.3639E-59	11481	DP1061-12	222.72	134.89			NaN	NaN	NaN	0	0	Median	27132000	0	27132000	1035	321	966	2146;2147;2148	5017;5018;5019;5020;5021;5022;5023;5024	5020		8	9606
LGEHNIDVLEGNEQFINAAK	1	0	Unmodified	2210.0968	0.096760517	5	CON__P00761			yes	yes	0	0	0	3.68	0.892	1	1	14	15	7	28.005	28.005	2;3	2.0613E-205	7846	DP1061-12	345.69	313.97		+	NaN	NaN	NaN	0	0	Median	373290000	373290000	0	1036	5	967	2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184;2185;2186	5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035;5036;5037;5038;5039;5040;5041;5042;5043;5044;5045;5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063;5064;5065;5066;5067;5068;5069;5070;5071;5072;5073;5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096;5097;5098;5099;5100	5029		76	
LGEYGFQNALIVR	0	1	Unmodified	1478.7882	0.78816332	11	CON__P02769			yes	yes	0	0	0	3.33	1.7	1			1	1	20.336	20.336	2	4.6183E-05	8980	DP1061-11	127.76	67.246		+	NaN	NaN	NaN	0	0	Median	9261100	9261100	0	1037	11	968	2187;2188;2189	5101;5102;5103;5104;5105;5106;5107;5108	5101		8	9606
LGFAGLVQEISFGTTK	1	0	Unmodified	1666.893	0.89302232	170	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			2			23.201	23.201	2	0.00047643	15022	DP1061-13	111.63	78.771			NaN	NaN	NaN	0	0	Median	0	0	0	1038	170	969	2190;2191	5109;5110	5110		2	9606
LGGIPVGVIAVETR	0	1	Unmodified	1379.8136	0.81364979	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.147	20.147	2	1.8496E-13	8682	DP1061-11	118.28	118.28			0.86574	0.93955	NaN	1	0	Median	5953000	3075600	2877400	1039	26	970	2192	5111;5112;5113;5114	5113		4	9606
LGGIPVGVVAVETR	0	1	Unmodified	1365.798	0.79799972	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	2	1	1	1		20.114	20.114	2	5.0028000000000004E-20	7835	DP1061-11	132.17	85.352			0.90487	0.95439	5.1956	5	0	Median	673370000	355830000	317540000	1040	287	971	2193;2194;2195;2196;2197	5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134	5118		20	9606
LGIYTVLFER	0	1	Unmodified	1209.6758	0.67575932	273	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		22.034	22.034	2	0.011859	12300	DP1061-14	94.309	45.554			NaN	NaN	NaN	0	0	Median	2077400	0	2077400	1041	273	972	2198	5135;5136	5136		2	9606
LGLGSVVPVEYLLDR	0	1	Unmodified	1628.9138	0.91375776	354	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	2	0		1				23.443	23.443	2	0.0093132	13020	DP1061-12	90.653	47.91			NaN	NaN	NaN	0	0	Median	3022800	0	3022800	1042	354	973	2199	5137;5138	5138		2	9606
LGNPIVPLNIR	0	1	Unmodified	1204.7292	0.72919187	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.413	19.413	2	0.017807	7978	DP1061-11	83.265	50.945			NaN	NaN	NaN	0	0	Median	0	0	0	1043	260	974	2200	5139	5139		1	9606
LGSTVFVANLDYK	1	0	Unmodified	1425.7504	0.75038083	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			19.398	19.398	2	0.0021822	10245	DP1061-13	79.82	61.924			1.0162	1.0465	NaN	1	0	Median	15935000	8610100	7324800	1044	188	975	2201	5140;5141;5142	5142		3	9606
LGTPELSTAER	0	1	Unmodified	1172.6037	0.60371659	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.15	3	1	1	1		15.872	15.872	2	7.507E-09	4272	DP1061-11	125.71	76.271			0.85659	0.88294	10.37	4	0	Median	372850000	190810000	182040000	1045	287	976	2202;2203;2204;2205;2206;2207	5143;5144;5145;5146;5147;5148;5149;5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162	5144		20	9606
LGTPELSTAERK	1	1	Unmodified	1300.6987	0.69867961	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.131	14.131	3	7.0913E-12	3214	DP1061-11	123.01	92.279			0.9178	0.97185	NaN	1	0	Median	26689000	13485000	13205000	1046	287	977	2208	5163;5164;5165;5166	5164		4	9606
LGVQTVAVYSEADR	0	1	Unmodified	1506.7678	0.7678218	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	4	0.894			2	1	2	17.742	17.742	2	5.1695E-09	7967	DP1061-13	111.52	88.646			0.88305	0.90172	10.012	3	0	Median	68904000	39195000	29709000	1047	395	978	2209;2210;2211;2212;2213	5167;5168;5169;5170;5171;5172;5173;5174	5168		7	9606
LHFFMPGFAPLTSR	0	1	Oxidation (M)	1635.8232	0.82316861	253;77;305;335	P07437;A6NNZ2;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	1	0	3.5	0.5			2	2		20.026	20.026	2;3	1.8764E-09	10972	DP1061-13	107.39	107.39			1.5928	1.6262	4.7879	3	0	Plateau	105100000	38674000	66428000	1048	77;253;305;335	979	2214;2215;2216;2217	5175;5176;5177;5178;5179;5180;5181;5182;5183	5175	97	9	9606
LHFFMPGFAPLTSR	0	1	Unmodified	1619.8283	0.82825399	253;77;305;335	P07437;A6NNZ2;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	0	3	0			3			21.476	21.476	2;3	1.1625E-20	12906	DP1061-13	131.69	111.11			1.2068	1.2373	NaN	1	0	Median	18388000	6964000	11424000	1049	77;253;305;335	979	2218;2219;2220	5184;5185;5186;5187;5188;5189	5187		6	9606
LHISPSNMTNQNTPEYMEK	1	0	2 Oxidation (M)	2265.0042	0.0041820395	379	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	2	0	3	0			1			14.445	14.445	3	0.019194	4797	DP1061-13	65.022	44.931			NaN	NaN	NaN	0	0	Median	2638600	0	2638600	1050	379	980	2221	5190	5190	393;394	1	9606
LHYCVSCAIHSK	1	0	Unmodified	1473.6857	0.68568885	236	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	5	0					1	13.8	13.8	3	0.037536	4146	DP1061-15	52.071	33.447			1.8105	1.6173	NaN	1	0	Median	3514000	983080	2530900	1051	236	981	2222	5191	5191		0	9606
LHYNEGLNIK	1	0	Unmodified	1199.6299	0.62987176	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		15.099	15.099	2	0.043802	5379	DP1061-14	74.92	17.873			NaN	NaN	NaN	0	0	Median	0	0	0	1052	155	982	2223	5192	5192		1	9606
LIASVAGSVER	0	1	Unmodified	1100.619	0.61897272	304	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	4	0				1		15.672	15.672	2	0.0045862	5720	DP1061-14	120.31	40.593			NaN	NaN	NaN	0	0	Median	6104200	0	6104200	1053	304	983	2224	5193;5194	5194		2	9606
LIDFLECGK	1	0	Unmodified	1093.5478	0.54778161	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.572	19.572	2	0.040298	10586	DP1061-13	77.318	32.968			NaN	NaN	NaN	0	0	Median	5675900	0	5675900	1054	102	984	2225	5195;5196	5195		2	9606
LIDLHSPSEIVK	1	0	Unmodified	1349.7555	0.7554662	200	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					2	16.885	16.885	3	0.007543	7004	DP1061-15	83.182	35.88			NaN	NaN	NaN	0	0	Median	5219600	0	5219600	1055	200	985	2226;2227	5197;5198;5199	5198		3	9606
LIEVDDER	0	1	Unmodified	987.48729	0.48728985	230	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		14.739	14.739	2	0.0022042	4965	DP1061-14	101.33	65.447			1.68	1.7165	NaN	1	0	Median	9955200	3886300	6068900	1056	230	986	2228	5200;5201;5202;5203	5202		4	9606
LIGEYGLR	0	1	Unmodified	919.51272	0.51271674	166	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	16.932	16.932	2	0.0084788	7187	DP1061-15	94.262	11.999			1.9844	1.8639	NaN	1	0	Median	14515000	4820100	9695000	1057	166	987	2229	5204;5205;5206	5206		3	9606
LIGLSATLPNYEDVATFLR	0	1	Unmodified	2092.1205	0.12045607	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	2	0		1				24.318	24.318	2	0.00090001	14040	DP1061-12	107.99	40.719			NaN	NaN	NaN	0	0	Median	1461400	0	1461400	1058	48	988	2230	5207;5208	5208		2	9606
LILISTNGSFIR	0	1	Unmodified	1332.7765	0.776536	350	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		20.409	20.409	2	0.0057296	10541	DP1061-14	89.029	16.15			NaN	NaN	NaN	0	0	Median	4472700	0	4472700	1059	350	989	2231	5209	5209		1	9606
LISQIVSSITASLR	0	1	Unmodified	1486.8719	0.87189295	252;400	P68363;P68366;Q9H853;Q9BQE3	TUBA1B;TUBA4A;TUBA4B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			23.506	23.506	2	2.4183E-48	15244	DP1061-13	174.42	174.42			1.7622	1.8076	NaN	1	0	Median	12906000	5067700	7838100	1060	252;400	990	2232	5210;5211;5212;5213;5214;5215	5210		6	9606
LISWYDNEFGYSNR	0	1	Unmodified	1762.7951	0.79509919	61	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		20.992	20.992	2	3.9225E-08	11234	DP1061-14	131.12	71.052			NaN	NaN	NaN	0	0	Median	1792400	1792400	0	1061	61	991	2233	5216;5217	5216		2	9606
LITEDVQGK	1	0	Unmodified	1001.5393	0.53932542	202	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		14.037	14.037	2	0.0042364	4220	DP1061-14	95.741	41.13			1.5241	1.4557	NaN	1	0	Median	10816000	4023300	6792600	1062	202	992	2234	5218;5219;5220;5221	5220		4	9606
LITPAVVSER	0	1	Unmodified	1083.6288	0.62880913	235	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	16.365	16.365	2	0.019079	6452	DP1061-15	83.948	49.14			NaN	NaN	NaN	0	0	Median	6371200	0	6371200	1063	235	993	2235	5222	5222		1	9606
LITYGSDR	0	1	Unmodified	923.47125	0.47124585	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		14.191	14.191	2	1.732E-15	4435	DP1061-13	148.33	87.539			1.0604	1.0792	0.53774	2	0	Median	470030000	225250000	244780000	1064	67	994	2236;2237	5223;5224;5225;5226;5227;5228;5229;5230	5226		8	9606
LITYGSDRTEALK	1	1	Unmodified	1465.7777	0.77765821	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			15.087	15.087	3	0.0015102	5421	DP1061-13	71.806	40.934			0.97478	0.99921	NaN	1	0	Median	15715000	10019000	5696300	1065	67	995	2238	5231;5232;5233	5233		3	9606
LITYGSDRTEALKR	1	2	Unmodified	1621.8788	0.87876924	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	3	0			2			14.137	14.137	3;4	0.0015362	4438	DP1061-13	66.538	66.538			1.1119	1.1637	0.25879	2	0	Median	141580000	66263000	75319000	1066	67	996	2239;2240	5234;5235;5236;5237;5238;5239;5240;5241;5242	5238		9	9606
LKGDDLQAIKK	3	0	Unmodified	1227.7187	0.71868677	79	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	2	4	0				1		12.707	12.707	3	0.0013322	2852	DP1061-14	80.245	38.555			1.927	2.1281	NaN	1	0	Median	11329000	3783700	7545300	1067	79	997	2241	5243;5244	5244		2	9606
LKYENEVALR	1	1	Unmodified	1233.6717	0.67173657	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1	0	1					15.335	15.335	3	0.018055	4117	DP1061-11	97.597	76.027		+	NaN	NaN	NaN	0	0	Median	12191000	12191000	0	1068	15	998	2242	5245;5246	5245		2	9606
LLACIASRPGQCGR	0	2	Unmodified	1557.7868	0.78679988	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	14.798	14.798	3	0.012113	4936	DP1061-15	55.98	27.697			1.6132	1.566	NaN	1	0	Median	5579100	2156400	3422700	1069	212	999	2243	5247;5248	5247		2	9606
LLADQAEAR	0	1	Unmodified	985.51926	0.51925868	264	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	5	0					1	13.46	13.46	2	0.0039607	3949	DP1061-15	96.253	40.577			1.879	1.7649	NaN	1	0	Median	7492300	2987300	4505000	1070	264	1000	2244	5249;5250	5250		2	9606
LLDNMAEFFR	0	1	Unmodified	1254.6067	0.60669348	198	P56589	PEX3	Peroxisomal biogenesis factor 3	yes	yes	0	0	0	3	0			1			21.66	21.66	2	0.0085821	13122	DP1061-13	75.189	8.8382			1.4274	1.4635	NaN	1	0	Median	12236000	4596700	7639300	1071	198	1001	2245	5251	5251		1	9606
LLEETQLDMNEFDNLLQPIIDTCTK	1	0	Oxidation (M)	3008.4359	0.43585449	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	1	0	2	0		1				24.428	24.428	3	0.0001836	14059	DP1061-12	95.138	70.242			NaN	NaN	NaN	0	0	Median	3563800	0	3563800	1072	361	1002	2246	5252;5253;5254	5253	382	3	9606
LLEGEDAHLSSSQFSSGSQSSR	0	1	Unmodified	2308.0567	0.056746196	6	P02533;CON__P02533;CON__Q61782	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1	0	1					16.193	16.193	3	0.029914	4846	DP1061-11	59.163	31.023		+	NaN	NaN	NaN	0	0	Median	0	0	0	1073	6	1003	2247	5255	5255		1	9606
LLEPVLLLGK	1	0	Unmodified	1093.7111	0.71108219	214	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	21.3	21.3	2	1.9947E-36	11656	DP1061-15	170.3	123.3			1.1137	0.99484	NaN	1	0	Median	8933600	3728700	5204900	1074	214	1004	2248	5256;5257	5256		2	9606
LLESLDQLELR	0	1	Unmodified	1327.7347	0.73473076	58	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	20.508	20.508	2	7.4984E-13	10823	DP1061-15	129.85	65.477			1.8826	1.7682	NaN	1	0	Median	5521100	1869000	3652200	1075	58	1005	2249	5258;5259	5258		2	9606
LLETESFQMNR	0	1	Unmodified	1366.6551	0.65510023	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.782	17.782	2	5.5228E-49	6212	DP1061-11	193.41	149.03			0.94376	0.98949	4.7524	2	0	Median	107080000	53709000	53372000	1076	287	1006	2250;2251	5260;5261;5262;5263;5264;5265;5266;5267	5261		8	9606
LLETESFQMNR	0	1	Oxidation (M)	1382.65	0.65001485	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.6	0.8	3	1	1			19.88	19.88	2	6.79E-09	11296	DP1061-11	120.99	92.59			0.89129	0.93881	11.442	4	0	Median	126330000	63090000	63241000	1077	287	1006	2252;2253;2254;2255;2256	5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281;5282	5270	288	15	9606
LLEVQGSRPGK	1	1	Unmodified	1182.6721	0.67207093	210	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4	0				1		13.125	13.125	2	0.025497	3866	DP1061-14	98.044	38.799			NaN	NaN	NaN	0	0	Median	13338000	0	13338000	1078	210	1007	2257	5283	5283		1	9606
LLGQFTLIGIPPAPR	0	1	Unmodified	1591.945	0.94499831	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			22.482	22.482	2	5.4415E-38	14062	DP1061-13	163.9	163.9			1.8287	1.8734	NaN	1	0	Median	19197000	6881100	12316000	1079	146	1008	2258	5284;5285;5286;5287;5288	5287		5	9606
LLHYLGHVMVNGPTTPIPVK	1	0	Oxidation (M)	2201.2031	0.20308026	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				17.804	17.804	4	9.9717E-09	6523	DP1061-12	96.435	96.435			0.61679	0.64806	NaN	1	0	Median	68505000	40059000	28445000	1080	89	1009	2259	5289;5290;5291;5292;5293;5294;5295	5289	132	7	9606
LLHYLGHVMVNGPTTPIPVK	1	0	Unmodified	2185.2082	0.20816564	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				18.547	18.547	3	3.1618E-19	7454	DP1061-12	120.39	120.39			0.70245	0.73806	NaN	1	0	Median	18132000	9332200	8799400	1081	89	1009	2260	5296;5297;5298;5299	5298		4	9606
LLIHQSLAGGIIGVK	1	0	Unmodified	1517.9293	0.92934824	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			18.438	18.438	3	0.0051672	9115	DP1061-13	85.45	67.879			NaN	NaN	NaN	0	0	Median	0	0	0	1082	209	1010	2261;2262	5300;5301	5301		2	9606
LLLAWLGGWGCMGR	0	1	Oxidation (M)	1604.7956	0.79557365	357	Q86UP0	CDH24	Cadherin-24	yes	yes	0	1	0	2	0		1				18.624	18.624	2	0.014422	7356	DP1061-12	57.59	31.547			1.0061	1.0906	NaN	1	0	Median	23704000	11688000	12016000	1083	357	1011	2263	5302	5302	377	1	9606
LLLEAMDELEVAFNNTNVR	0	1	Oxidation (M)	2206.094	0.093983325	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1				22.523	22.523	2	0.0040437	11906	DP1061-12	101.45	71.764			NaN	NaN	NaN	0	0	Median	2637400	2637400	0	1084	287	1012	2264	5303	5303	289	1	9606
LLLEDLVK	1	0	Unmodified	941.57973	0.57973367	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3.25	1.48	1		1	1	1	20.465	20.465	2	0.00041271	11531	DP1061-13	111.65	26.289			1.0537	1.1033	11.874	2	0	Median	260670000	137350000	123320000	1085	287	1013	2265;2266;2267;2268	5304;5305;5306;5307;5308;5309;5310;5311;5312;5313	5306		10	9606
LLLEDLVKK	2	0	Unmodified	1069.6747	0.67469669	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.624	18.624	2	0.043434	7289	DP1061-11	38.086	38.086			0.93812	1.1238	NaN	1	0	Median	9195400	4662300	4533100	1086	287	1014	2269	5314	5314		0	9606
LLLGAGAVAYGVR	0	1	Unmodified	1258.7398	0.73975656	396	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		19.253	19.253	2	0.00018519	9423	DP1061-14	108.98	49.997			NaN	NaN	NaN	0	0	Median	1842000	0	1842000	1087	396	1015	2270	5315;5316	5316		2	9606
LLLPGELAK	1	0	Unmodified	952.59572	0.59571809	75;44	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;A0A2R8Y619;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					1	18.258	18.258	2	0.00070535	8342	DP1061-15	102.51	37.756			1.3355	1.193	NaN	1	0	Median	165830000	67705000	98123000	1088	44;75	1016	2271	5317;5318;5319;5320	5318		4	9606
LLLQVQHASK	1	0	Unmodified	1135.6713	0.67134264	66;94;93	P05141;P12235;P12236	SLC25A5;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				3		14.336	14.336	2;3	0.0013308	4520	DP1061-14	96.331	96.331			1.3724	1.3108	NaN	1	0	Median	8118400	3346300	4772100	1089	66;93;94	1017	2272;2273;2274	5321;5322;5323;5324;5325;5326	5321		6	9606
LLMMAGIDDCYTSAR	0	1	2 Oxidation (M)	1747.7579	0.7579271	97	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	0	4	0				1		17.042	17.042	2	4.2395E-10	6974	DP1061-14	112.13	96.753			1.5047	1.5374	NaN	1	0	Median	4701300	1540800	3160600	1090	97	1018	2275	5327;5328;5329;5330	5327	142;143	4	9606
LLNEPQKR	1	1	Unmodified	996.57163	0.5716286	342	Q5T5X7	BEND3	BEN domain-containing protein 3	yes	yes	0	0	1	1	0	1					14.335	14.335	2	0.030616	3553	DP1061-11	58.167	35.096			0.89094	0.9434	NaN	1	0	Median	3990000	1905500	2084600	1091	342	1019	2276	5331	5331		0	9606
LLQDFFNGK	1	0	Unmodified	1080.5604	0.56039521	88;101	P11142;P54652;P17066	HSPA8;HSPA2;HSPA6	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6	no	no	0	0	0	3	0			1			19.609	19.609	2	0.019126	10461	DP1061-13	111.01	53.448			NaN	NaN	NaN	0	0	Median	21510000	0	21510000	1092	88;101	1020	2277	5332;5333	5333		2	9606
LLQDFFNGR	0	1	Unmodified	1108.5665	0.56654322	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			19.86	19.86	2	4.7805000000000005E-24	10840	DP1061-13	161.9	161.9			4.8063	4.899	NaN	1	0	Median	87311000	13916000	73395000	1093	85	1021	2278	5334;5335;5336;5337	5337		4	9606
LLQLVEDR	0	1	Unmodified	984.5604	0.56039521	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			17.324	17.324	2	0.020456	7966	DP1061-13	109.01	59.654			NaN	NaN	NaN	0	0	Median	8038300	0	8038300	1094	102	1022	2279	5338;5339	5338		2	9606
LLQLWEK	1	0	Unmodified	928.5382	0.53820321	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				19.012	19.012	2	0.011301	7893	DP1061-12	107.43	45.432			NaN	NaN	NaN	0	0	Median	8001900	0	8001900	1095	361	1023	2280	5340;5341	5340		2	9606
LLQSQLQVK	1	0	Unmodified	1055.6339	0.63389451	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	3	0			1			15.545	15.545	2	0.01923	5831	DP1061-13	108.09	108.09			NaN	NaN	NaN	0	0	Median	8610200	0	8610200	1096	390	1024	2281	5342	5342		1	9606
LLTSFLPAQLLR	0	1	Unmodified	1370.8286	0.82857157	80	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	3	0			1			22.839	22.839	2	1.9185E-05	14655	DP1061-13	101.46	61.402			1.171	1.194	NaN	1	0	Median	5914200	2806400	3107800	1097	80	1025	2282	5343;5344;5345;5346;5347	5345		5	9606
LLVATSVAAR	0	1	Unmodified	999.60768	0.60767975	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	3	0			1			15.887	15.887	2	0.01689	6110	DP1061-13	85.161	41.914			NaN	NaN	NaN	0	0	Median	5061500	0	5061500	1098	352	1026	2283	5348	5348		1	9606
LLVDVDESTLSPEEQKER	1	1	Unmodified	2086.043	0.042993612	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2.33	0.471		2	1			17.571	17.571	2;3	6.0683E-73	6471	DP1061-12	235.31	181.11			NaN	NaN	NaN	0	0	Median	53273000	0	53273000	1099	46	1027	2284;2285;2286	5349;5350;5351;5352;5353;5354;5355;5356	5353		8	9606
LLYAFAEATVPK	1	0	Unmodified	1321.7282	0.72818882	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	19.822	19.822	2	6.0056E-11	10037	DP1061-15	121.6	66.233			0.90859	1.0098	12.246	3	0	Plateau	107560000	51605000	55957000	1100	68	1028	2287;2288;2289	5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370	5366		14	9606
LMELHGEGSSSGK	1	0	Oxidation (M)	1346.6136	0.61362935	202	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		12.395	12.395	3	0.016	2545	DP1061-14	49.298	30.332			1.5468	1.4774	NaN	1	0	Median	14467000	6517900	7948900	1101	202	1029	2290	5371	5371	229	1	9606
LMQQLQDLEECR	0	1	Unmodified	1561.7229	0.72286222	375	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	0	0	3.5	0.5			1	1		20.932	20.932	2	0.0017998	12169	DP1061-13	83.998	55.985			0.9395	0.95868	14.821	2	0	Median	98736000	46486000	52250000	1102	375	1030	2291;2292	5372;5373;5374	5373		3	9606
LMTEILGR	0	1	Oxidation (M)	947.511	0.51100218	40	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	1	0	5	0					1	15.837	15.837	2	0.009576	5878	DP1061-15	80.229	35.834			2.9599	2.7801	NaN	1	0	Median	17860000	4971400	12888000	1103	40	1031	2293	5375;5376	5376	37	2	9606
LNDLEDALQQAK	1	0	Unmodified	1356.6885	0.68850885	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	2	1				1	18.331	18.331	2	1.3112E-05	6942	DP1061-11	146.11	80.95		+	NaN	NaN	NaN	0	0	Median	5773200	5773200	0	1104	60	1032	2294;2295	5377;5378;5379	5378		3	9606
LNDLEEALQQAK	1	0	Unmodified	1370.7042	0.70415892	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	5	0					1	18.707	18.707	2	0.00034125	8892	DP1061-15	104.82	53.758		+	NaN	NaN	NaN	0	0	Median	3522100	3522100	0	1105	17	1033	2296	5380	5380		1	9606
LNEIVGNEDTVSR	0	1	Unmodified	1444.7158	0.71578623	138	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	4	0				1		15.499	15.499	2	0.0050501	5597	DP1061-14	91.469	39.941			NaN	NaN	NaN	0	0	Median	0	0	0	1106	138	1034	2297	5381	5381		1	9606
LNIDSIIQR	0	1	Unmodified	1070.6084	0.60840804	142	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3	0			1			19.077	19.077	2	0.0063178	9823	DP1061-13	136.8	66.272			NaN	NaN	NaN	0	0	Median	9292000	0	9292000	1107	142	1035	2298	5382;5383	5382		2	9606
LNISYTR	0	1	Unmodified	865.46577	0.46576654	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		15.807	15.807	2	1.636E-09	5663	DP1061-13	134.06	84.467			0.86402	0.88289	10.255	2	0	Median	118330000	60241000	58087000	1108	395	1036	2299;2300;2301	5384;5385;5386;5387;5388;5389;5390	5387		7	9606
LNLDSIIGR	0	1	Unmodified	999.57129	0.57129425	210	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		19.819	19.819	2	0.01815	9924	DP1061-14	116.25	57.646			NaN	NaN	NaN	0	0	Median	12924000	0	12924000	1109	210	1037	2302	5391;5392;5393;5394;5395	5392		5	9606
LPAAGVGDMVMATVK	1	0	2 Oxidation (M)	1490.7473	0.74728606	232	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					1	15.934	15.934	2	0.00014922	5960	DP1061-15	81.625	81.625			1.3792	1.2321	NaN	1	0	Median	14866000	5809800	9056200	1110	232	1038	2303	5396;5397	5397	245;246	2	9606
LPCIYLVDSGGAYLPR	0	1	Unmodified	1792.9182	0.91819121	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.67	0.745			3	2	1	21.61	21.61	2;3	2.1423999999999998E-38	13033	DP1061-13	203.03	203.03			0.80866	0.84198	3.2615	4	0	Linear	354520000	195190000	159320000	1111	417	1039	2304;2305;2306;2307;2308;2309	5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408;5409;5410;5411;5412;5413;5414;5415;5416	5400		19	9606
LPEDPLLSGLLDSPALK	1	0	Unmodified	1776.9873	0.98731663	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		2				23.764	23.764	2	4.3113E-10	13455	DP1061-12	133.16	98.082			NaN	NaN	NaN	0	0	Median	1887800	0	1887800	1112	171	1040	2310;2311	5417;5418	5418		2	9606
LPELLLK	1	0	Unmodified	824.53714	0.53714057	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			18.925	18.925	2	2.0247999999999999E-22	7418	DP1061-11	164.1	36.444			0.86148	0.9171	4.584	3	0	Plateau	303190000	161610000	141580000	1113	287	1041	2312;2313;2314	5419;5420;5421;5422;5423;5424;5425;5426;5427;5428	5421		10	9606
LPGGELNPGEDEVEGLK	1	0	Unmodified	1751.8578	0.85775902	40	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	5	0					1	18.139	18.139	2	7.4414E-17	8262	DP1061-15	127.03	104.98			2.1517	1.9222	NaN	1	0	Median	12581000	4653500	7927900	1114	40	1042	2315	5429;5430;5431;5432;5433	5430		5	9606
LPGGELNPGEDEVEGLKR	1	1	Unmodified	1907.9589	0.95887005	40	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	1	5	0					1	16.908	16.908	3	8.7232E-34	6943	DP1061-15	149.19	149.19			2.0349	1.9545	NaN	1	0	Median	28890000	8660800	20229000	1115	40	1043	2316	5434;5435	5434		2	9606
LPGGNEIGMVAWK	1	0	Oxidation (M)	1386.6966	0.69657112	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.8	0.748	2	2	1			19.648	19.648	2	1.0001E-23	7012	DP1061-11	144.55	117.25			0.89313	0.94761	4.1915	4	0	Median	305610000	152030000	153580000	1116	287	1044	2317;2318;2319;2320;2321	5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447;5448	5438	290	12	9606
LPGGNEIGMVAWK	1	0	Unmodified	1370.7017	0.70165649	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				19.758	19.758	2	3.8503E-32	8685	DP1061-12	164.65	164.65			0.91253	0.9588	NaN	1	0	Median	48517000	25785000	22731000	1117	287	1044	2322	5449;5450;5451;5452;5453	5450		5	9606
LPGGNEVGMVAFK	1	0	Oxidation (M)	1333.67	0.67002202	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.498	17.498	2	0.0035697	5903	DP1061-11	66.92	32.748			1.0998	1.1708	NaN	1	0	Median	4517400	2071500	2445900	1118	26	1045	2323	5454	5454	22	1	9606
LPNFGFVVFDDSEPVQK	1	0	Unmodified	1936.9571	0.95707914	293	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			1			22.865	22.865	2	0.010178	14610	DP1061-13	85.554	55.218			NaN	NaN	NaN	0	0	Median	0	0	0	1119	293	1046	2324	5455	5455		1	9606
LPNGLVIASLENYSPVSR	0	1	Unmodified	1928.0367	0.036726442	115	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	3	0			1			21.969	21.969	2	0.00092109	13505	DP1061-13	108.66	75.802			NaN	NaN	NaN	0	0	Median	2929800	2929800	0	1120	115	1047	2325	5456;5457	5456		2	9606
LPPEVNR	0	1	Unmodified	823.4552	0.45520186	450	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	13.093	13.093	2	0.034519	3178	DP1061-15	89.673	26.956			NaN	NaN	NaN	0	0	Median	26214000	0	26214000	1121	450	1048	2326	5458	5458		1	9606
LPPNTNDEVDEDPTGNK	1	0	Unmodified	1853.8279	0.82791546	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2.44	1.07	2	3	2	2		14.981	14.981	2	1.5952E-29	4774	DP1061-12	174.9	133.68			NaN	NaN	NaN	0	0	Median	19320000	0	19320000	1122	321	1049	2327;2328;2329;2330;2331;2332;2333;2334;2335	5459;5460;5461;5462;5463;5464;5465;5466;5467	5463		9	9606
LPQQSHSAFGATSSSSGFGK	1	0	Unmodified	1979.9337	0.93371793	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				15.239	15.239	3	0.009592	4521	DP1061-12	74.325	44.218			NaN	NaN	NaN	0	0	Median	0	0	0	1123	359	1050	2336	5468	5468		1	9606
LPQTPLDTGIPFPPVFSTSSAGVK	1	0	Unmodified	2455.2999	0.299877	354	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	2	0		1				23.343	23.343	2	0.0014589	12875	DP1061-12	79.326	47.499			NaN	NaN	NaN	0	0	Median	0	0	0	1124	354	1051	2337	5469	5469		1	9606
LPRPPPPEMPESLK	1	1	Oxidation (M)	1602.844	0.84396364	265	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	1	4	0				1		15.162	15.162	3	0.020482	5323	DP1061-14	47.301	27.292			0.62798	0.63342	NaN	1	0	Median	16389000	7639000	8750200	1125	265	1052	2338	5470	5470	269	1	9606
LPSYFVRPDLGPK	1	1	Unmodified	1487.8136	0.81364979	354	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	1	2	0		1				18.447	18.447	3	0.045418	7232	DP1061-12	73.273	37.382			NaN	NaN	NaN	0	0	Median	5008700	0	5008700	1126	354	1053	2339	5471	5471		1	9606
LPVCSQQQGEPDLTEHEK	1	0	Unmodified	2093.9688	0.96878281	388	Q96F63	CCDC97	Coiled-coil domain-containing protein 97	yes	yes	0	0	0	3	0			1			14.949	14.949	3	0.0044063	5386	DP1061-13	94.973	66.424			NaN	NaN	NaN	0	0	Median	5882500	0	5882500	1127	388	1054	2340	5472	5472		1	9606
LPVGTTATLYFR	0	1	Unmodified	1337.7343	0.73433683	427	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	4	0				1		19.467	19.467	2	0.0027457	9596	DP1061-14	95.523	43.574			NaN	NaN	NaN	0	0	Median	4306800	0	4306800	1128	427	1055	2341	5473;5474	5474		2	9606
LQAEISQAAR	0	1	Unmodified	1085.5829	0.58292157	38	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	3	0			1			13.949	13.949	2	0.012102	4232	DP1061-13	104.2	44.955			NaN	NaN	NaN	0	0	Median	13063000	0	13063000	1129	38	1056	2342	5475;5476	5476		2	9606
LQETLSAADR	0	1	Unmodified	1102.5619	0.56185177	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.426	14.426	2	0.0073338	3573	DP1061-11	77.192	7.3801			1.4248	1.5455	NaN	1	0	Median	2694500	1092300	1602200	1130	260	1057	2343	5477	5477		1	9606
LQGEIAHVK	1	0	Unmodified	993.56073	0.56072956	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	5	0					1	12.445	12.445	2	0.023063	2784	DP1061-15	90.37	9.0731		+	NaN	NaN	NaN	0	0	Median	9589300	9589300	0	1131	17	1058	2344	5478	5478		1	9606
LQNALNEQR	0	1	Unmodified	1084.5625	0.56252048	313	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					13.316	13.316	2	0.019475	2687	DP1061-11	101.25	57.136			NaN	NaN	NaN	0	0	Median	912460	0	912460	1132	313	1059	2345	5479	5479		1	9606
LQNSYQPTNK	1	0	Unmodified	1191.5884	0.58840088	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2.5	1.12	1	1	1	1		12.595	12.595	2	2.0585E-05	2342	DP1061-12	156.75	107.69			NaN	NaN	NaN	0	0	Median	29338000	0	29338000	1133	352	1060	2346;2347;2348;2349	5480;5481;5482;5483;5484;5485;5486	5482		7	9606
LQVEHPCTEMVADVNLPAAQLQIAMGIPLYR	0	1	2 Oxidation (M)	3508.7517	0.75166651	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.33	0.471	2	1				21.566	21.566	3;4	2.0462999999999998E-22	10902	DP1061-12	125.86	104.09			0.6924	0.75055	3.6694	3	0	Plateau	70758000	39211000	31546000	1134	287	1061	2350;2351;2352	5487;5488;5489;5490;5491;5492;5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505;5506;5507;5508;5509;5510;5511;5512;5513;5514	5510	291;292	28	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Oxidation (M)	2595.3037	0.30365852	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.222	20.222	3	4.3513E-20	11214	DP1061-13	126.45	103.78			0.97315	0.99014	NaN	1	0	Median	150100000	74569000	75526000	1135	67	1062	2353	5515;5516;5517;5518	5517	75	4	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Unmodified	2579.3087	0.3087439	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			2			22.343	22.343	3	0.00017105	14005	DP1061-13	94.019	70.106			NaN	NaN	NaN	0	0	Median	0	0	0	1136	67	1062	2354;2355	5519;5520	5520		2	9606
LQVEHTVTEEITDVDLVHAQIHVAEGR	0	1	Unmodified	3037.5469	0.546877	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				19.381	19.381	4;5	2.763E-09	8201	DP1061-12	91.202	91.202			1.0513	1.1396	41.724	2	0	Median	76087000	37646000	38441000	1137	89	1063	2356;2357	5521;5522;5523;5524	5522		4	9606
LRSEIDNVKK	2	1	Unmodified	1200.6826	0.68263561	60;19	CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	2	3	0			1			12.418	12.418	3	0.043899	2493	DP1061-13	59.265	14.84		+	NaN	NaN	NaN	0	0	Median	13290000	13290000	0	1138	19;60	1064	2358	5525	5525		1	9606
LSDGGLLLSYDGSSYTTYMK	1	0	Oxidation (M)	2186.0089	0.0089162914	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.543	20.543	2	2.4567E-08	9081	DP1061-11	96.135	78.564			0.96152	1.0236	NaN	1	0	Median	4425000	2628400	1796500	1139	287	1065	2359	5526;5527;5528;5529;5530	5527	293	5	9606
LSDGGLLLSYDGSSYTTYMK	1	0	Unmodified	2170.014	0.014001669	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		2				21.544	21.544	2	0.0012762	10757	DP1061-12	95.264	50.149			NaN	NaN	NaN	0	0	Median	0	0	0	1140	287	1065	2360;2361	5531;5532	5531		2	9606
LSDGGLLLSYDGSSYTTYMKEEVDR	1	1	Oxidation (M)	2814.2906	0.29057046	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.67	0.471	1	2				19.804	19.804	3	2.2065E-13	8274	DP1061-11	106.42	93.1			0.94904	0.9991	1.4367	2	0	Median	42485000	17436000	25048000	1141	287	1066	2362;2363;2364	5533;5534;5535;5536;5537;5538;5539;5540;5541	5533	293	9	9606
LSIVPVRR	0	2	Unmodified	938.60253	0.6025348	97	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	4	0				1		14.706	14.706	2	0.045764	4916	DP1061-14	34.003	6.8659			1.4658	1.3978	NaN	1	0	Median	2682200	1061800	1620400	1142	97	1067	2365	5542	5542		0	9606
LSKEDIER	1	1	Unmodified	988.51892	0.51892433	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			12.501	12.501	2	1.7446E-05	2601	DP1061-13	123.98	13.176			4.7589	4.8782	NaN	1	0	Median	32811000	5395400	27416000	1143	88	1068	2366	5543;5544	5543		2	9606
LSPPYSSPQEFAQDVGR	0	1	Unmodified	1876.8955	0.89554151	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	2	0		1				19.214	19.214	2	0.03113	8324	DP1061-12	80.312	50.308			NaN	NaN	NaN	0	0	Median	9758500	0	9758500	1144	292	1069	2367	5545	5545		1	9606
LSPQTGTTR	0	1	Unmodified	959.50361	0.50360861	368	Q8N7P7		Uncharacterized protein FLJ40521	yes	yes	0	0	0	3	0			1			13.227	13.227	2	9.7996E-07	3493	DP1061-13	124.08	41.33			1.2867	1.3183	NaN	1	0	Median	11080000	4733800	6345800	1145	368	1070	2368	5546	5546		1	9606
LSQVSDSVSGQTVVDPK	1	0	Unmodified	1744.8843	0.88430813	52	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				15.956	15.956	2	0.015467	5027	DP1061-12	80.96	40.806			NaN	NaN	NaN	0	0	Median	0	0	0	1146	52	1071	2369	5547	5547		1	9606
LSQYQEPLHLPGVR	0	1	Unmodified	1635.8733	0.87328993	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		17.767	17.767	2;3	5.9170999999999995E-21	8124	DP1061-13	136.93	136.93			0.91884	0.93575	6.559	2	0	Median	331100000	169640000	161460000	1147	67	1072	2370;2371;2372	5548;5549;5550;5551;5552;5553;5554;5555;5556	5549		9	9606
LSSPATLNSR	0	1	Unmodified	1044.5564	0.55637247	5	CON__P00761			yes	yes	0	0	0	3.25	1.56	2	1		3	2	16.387	16.387	1;2	8.3587E-06	4511	DP1061-14	163.15	88.896		+	NaN	NaN	NaN	0	0	Median	960850000	960850000	0	1148	5	1073	2373;2374;2375;2376;2377;2378;2379;2380	5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576	5570		20	
LSSQEAASSFGDDR	0	1	Unmodified	1468.643	0.64301522	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.67	0.471			2	4		15.848	15.848	2	6.5613E-59	5473	DP1061-14	218.75	171.19			1.0618	1.0833	2.1319	2	0	Median	203470000	98789000	104680000	1149	67	1074	2381;2382;2383;2384;2385;2386	5577;5578;5579;5580;5581;5582;5583;5584;5585;5586	5583		10	9606
LSSQEAASSFGDDRLLIEK	1	1	Unmodified	2065.0328	0.032763277	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			2	2		18.195	18.195	2;3	3.4301E-55	8713	DP1061-13	172.09	130.53			1.0622	1.0888	1.0439	2	0	Median	118730000	60664000	58069000	1150	67	1075	2387;2388;2389;2390	5587;5588;5589;5590;5591;5592;5593;5594;5595;5596	5591		10	9606
LSSWDQAETPGHTPSLR	0	1	Unmodified	1880.9017	0.90168952	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				16.653	16.653	3	4.8167E-05	5533	DP1061-12	113.67	85.323			NaN	NaN	NaN	0	0	Median	12621000	0	12621000	1151	46	1076	2391	5597;5598;5599	5597		3	9606
LSVDYGKK	2	0	Unmodified	908.49673	0.49673232	252;400	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	3	0			1			12.569	12.569	2	0.032294	2776	DP1061-13	76.774	39.615			1.4091	1.4222	NaN	1	0	Median	34666000	13529000	21137000	1152	252;400	1077	2392	5600	5600		1	9606
LTAIDILTTCAADIQR	0	1	Unmodified	1773.9295	0.92948418	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	2					22.615	22.615	2	0.00019058	10948	DP1061-11	114.72	71.878			NaN	NaN	NaN	0	0	Median	0	0	0	1153	48	1078	2393;2394	5601;5602	5602		2	9606
LTATPTPLGGMTGFHMQTEDR	0	1	2 Oxidation (M)	2292.0515	0.051466583	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	2	0	2	0		1				16.166	16.166	3	0.030493	5225	DP1061-12	54.355	27.518			NaN	NaN	NaN	0	0	Median	0	0	0	1154	46	1079	2395	5603	5603	50;51	1	9606
LTEGCSFR	0	1	Unmodified	968.43857	0.43856552	158	Q71UM5;P42677	RPS27L;RPS27	40S ribosomal protein S27-like;40S ribosomal protein S27	yes	no	0	0	0	5	0					2	13.799	13.799	2	0.0049842	4152	DP1061-15	121.99	51.077			NaN	NaN	NaN	0	0	Median	0	0	0	1155	158	1080	2396;2397	5604;5605	5604		2	9606
LTFLVAQK	1	0	Unmodified	918.55385	0.55385327	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.4	0.49	3	2				19.152	19.152	1;2	6.0245E-10	6330	DP1061-11	133.47	81.17			0.96685	1.0293	9.2098	5	0	Median	304330000	157310000	147020000	1156	287	1081	2398;2399;2400;2401;2402	5606;5607;5608;5609;5610;5611;5612	5607		6	9606
LTGSSAQEEASGVALGEAPDHSYESLR	0	1	Unmodified	2760.2838	0.2838456	286	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				2		17.563	17.563	3	3.1121E-14	7624	DP1061-14	109.84	89.768			0.76391	0.78053	NaN	1	0	Median	4856900	2362000	2494900	1157	286	1082	2403;2404	5613;5614;5615;5616;5617;5618	5615		6	9606
LTIAEER	0	1	Unmodified	830.44978	0.44978213	227	P62701;Q8TD47	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	4	0				1		13.887	13.887	2	0.00053188	4070	DP1061-14	111.04	9.3446			0.95263	0.97335	NaN	1	0	Median	15205000	8017200	7187300	1158	227	1083	2405	5619;5620;5621;5622	5620		4	9606
LTISSPLEAHK	1	0	Unmodified	1194.6608	0.66083754	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					16.025	16.025	3	0.0033185	4645	DP1061-11	94.465	59.663			NaN	NaN	NaN	0	0	Median	10288000	0	10288000	1159	321	1084	2406	5623;5624	5624		2	9606
LTLEDLEDSWDR	0	1	Unmodified	1490.6889	0.68890278	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	2	0		1				22.551	22.551	2	0.0060453	11944	DP1061-12	96.847	61.433			NaN	NaN	NaN	0	0	Median	0	0	0	1160	347	1085	2407	5625	5625		1	9606
LTPEEEEILNK	1	0	Unmodified	1313.6715	0.6714618	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	17.04	17.04	2	0.00073975	7150	DP1061-15	94.85	33.159			1.6832	1.5037	NaN	1	0	Median	11895000	3286000	8609000	1161	212	1086	2408	5626;5627	5627		2	9606
LTPETLTRWRSSLQPR	0	3	Unmodified	1940.0592	0.059193219	3	CON__A2I7N3			yes	yes	0	0	2	3.4	0.49			3	2		18.998	18.998	2;3	3.271E-05	9659	DP1061-13	117.02	62.679		+	NaN	NaN	NaN	0	0	Median	72034000	0	72034000	1162	3	1087	2409;2410;2411;2412;2413	5628;5629;5630;5631;5632	5628		5	
LTPLQLEIQR	0	1	Unmodified	1209.7081	0.70812208	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				18.85	18.85	2	0.036718	7625	DP1061-12	74.173	31.09			NaN	NaN	NaN	0	0	Median	4722100	0	4722100	1163	364	1088	2414	5633	5633		1	9606
LTQTSGETTHTHTEPTGDGK	1	0	Unmodified	2096.9611	0.9610549	161	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				12.412	12.412	3	0.015143	2146	DP1061-12	70.907	36.087			NaN	NaN	NaN	0	0	Median	0	0	0	1164	161	1089	2415	5634	5634		1	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Oxidation (M)	2723.3259	0.32585053	253;77;305	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	4	0				1		20.577	20.577	3	0.00029549	10863	DP1061-14	69.704	35.053			1.3958	1.4261	NaN	1	0	Median	4204100	1841500	2362500	1165	77;253;305	1090	2416	5635;5636;5637;5638	5636	98	4	9606
LTWHSCPEDEAQ	0	0	Unmodified	1471.6038	0.60379294	291	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	15.901	15.901	2	0.00036298	5923	DP1061-15	101.72	74.932			NaN	NaN	NaN	0	0	Median	0	0	0	1166	291	1091	2417	5639;5640	5639		2	9606
LVAIVDVIDQNR	0	1	Unmodified	1353.7616	0.76161421	182	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	4.5	0.5				1	1	20.139	20.139	2	2.0006E-07	10399	DP1061-15	112.75	79.856			1.6827	1.6485	4.3304	2	0	Median	15074000	6394500	8679700	1167	182	1092	2418;2419	5641;5642;5643;5644;5645;5646;5647;5648;5649;5650	5646		10	9606
LVEALCAEHQINLIK	1	0	Unmodified	1749.9447	0.94474031	121	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	17.964	17.964	3	6.7796E-05	8139	DP1061-15	86.498	51.148			1.6206	1.4477	NaN	1	0	Median	5998100	2320600	3677500	1168	121	1093	2420	5651;5652	5652		2	9606
LVILANNCPALR	0	1	Unmodified	1352.7598	0.75984008	238	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					3	18.173	18.173	2	0.00025383	8414	DP1061-15	91.069	67.997			1.845	1.7329	NaN	1	0	Median	10450000	3864300	6586200	1169	238	1094	2421;2422;2423	5653;5654;5655	5653		3	9606
LVILDEADAMTQDAQNALR	0	1	Oxidation (M)	2102.0314	0.031383068	152	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	1	0	4	0				1		19.78	19.78	2	2.1479E-06	9926	DP1061-14	119.01	83.278			NaN	NaN	NaN	0	0	Median	0	0	0	1170	152	1095	2424	5656	5656	184	1	9606
LVIYGGMSGCR	0	1	Unmodified	1211.5791	0.57909852	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	2	0		1				17.256	17.256	2	0.021443	6123	DP1061-12	80.239	33.813			NaN	NaN	NaN	0	0	Median	3597300	0	3597300	1171	185	1096	2425	5657	5657		1	9606
LVLGLSFSAALNAPIEK	1	0	Unmodified	1741.9978	0.99782174	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		22.484	22.484	2	3.0706E-33	14129	DP1061-13	153.81	140.41			0.75088	0.77326	NaN	1	0	Median	6543100	3575800	2967400	1172	417	1097	2426;2427	5658;5659;5660;5661;5662	5659		5	9606
LVNHFVEEFK	1	0	Unmodified	1260.6503	0.65027285	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			16.898	16.898	3	0.00023428	7206	DP1061-13	103.26	75.827			5.09	5.2417	NaN	1	0	Median	39703000	5731300	33972000	1173	85	1098	2428	5663;5664	5663		2	9606
LVNHFVEEFKR	1	1	Unmodified	1416.7514	0.75138388	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			15.958	15.958	3	0.00040698	6175	DP1061-13	84.687	66.062			4.3997	4.5099	NaN	1	0	Median	75842000	13370000	62472000	1174	85	1099	2429	5665;5666;5667;5668;5669	5667		5	9606
LVPELDTIVPLESTK	1	0	Unmodified	1652.9237	0.92365374	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		21.125	21.125	2;3	2.1629E-48	12343	DP1061-13	169.65	144.8			0.91839	0.84117	6.9988	3	0	Plateau	469640000	238660000	230980000	1175	68	1100	2430;2431;2432	5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682	5673		13	9606
LVQAFQFTDK	1	0	Unmodified	1195.6237	0.62372375	275	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	18.151	18.151	2	0.0040994	8291	DP1061-15	85.731	85.731			1.1596	1.0359	NaN	1	0	Median	4792200	2465100	2327100	1176	275	1101	2433	5683;5684	5683		2	9606
LVQSPNSYFMDVK	1	0	Oxidation (M)	1542.7388	0.73882986	158	Q71UM5;P42677	RPS27L;RPS27	40S ribosomal protein S27-like;40S ribosomal protein S27	yes	no	0	1	0	5	0					1	17.826	17.826	2	2.2813E-08	7916	DP1061-15	113.63	113.63			1.4295	1.277	NaN	1	0	Median	20237000	6731600	13505000	1177	158	1102	2434	5685;5686;5687;5688;5689;5690	5687	188	6	9606
LVQSPNSYFMDVK	1	0	Unmodified	1526.7439	0.74391524	158	Q71UM5;P42677	RPS27L;RPS27	40S ribosomal protein S27-like;40S ribosomal protein S27	yes	no	0	0	0	5	0					1	18.793	18.793	2	2.2071E-07	9056	DP1061-15	108.43	43.126			1.7824	1.5922	NaN	1	0	Median	6984300	2633900	4350400	1178	158	1102	2435	5691;5692;5693;5694;5695	5695		5	9606
LVSLCLANSFAK	1	0	Unmodified	1321.7064	0.70640752	470				yes	yes	0	0	0	4	0				1		20.733	20.733	2	0.0053104	10724	DP1061-14	73.985	27.827	+		0.28782	0.27491	NaN	1	0	Median	14281000	11443000	2837500	1179	470	1103	2436	5696	5696		1	9606
LVSSDPEINTK	1	0	Unmodified	1201.619	0.6190323	441	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		13.979	13.979	2	0.031206	4227	DP1061-14	75.509	37.697			NaN	NaN	NaN	0	0	Median	0	0	0	1180	441	1104	2437	5697	5697		1	9606
LVVPATQCGSLIGK	1	0	Unmodified	1441.7963	0.79628516	319	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		17.611	17.611	2	0.0020792	7620	DP1061-14	75.695	29.103			1.4503	1.3852	NaN	1	0	Median	6539100	2394600	4144500	1181	319	1105	2438	5698;5699	5699		2	9606
LVVWAADR	0	1	Unmodified	928.51305	0.51305109	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.405	17.405	2	6.0068E-06	7782	DP1061-13	116.88	82.076			0.91451	0.93136	1.294	2	0	Median	322980000	162140000	160850000	1182	395	1106	2439;2440	5700;5701;5702;5703;5704;5705;5706;5707;5708;5709	5703		10	9606
LVYVFSQDFTVFGGSLSGAHAQK	1	0	Unmodified	2457.2329	0.23286007	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.747	21.747	3	0.0042466	13340	DP1061-13	82.034	63.638			NaN	NaN	NaN	0	0	Median	4367800	0	4367800	1183	68	1107	2441	5710;5711	5711		2	9606
LWIANYSLPR	0	1	Unmodified	1231.6713	0.67134264	34	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			20.397	20.397	2	0.011085	11626	DP1061-13	99.136	40.889			NaN	NaN	NaN	0	0	Median	7038200	0	7038200	1184	34	1108	2442	5712;5713	5712		2	9606
LYGSAGPPPTGEEDTAEKDEL	1	0	Unmodified	2174.9855	0.98553831	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			17.53	17.53	2	0.038195	8027	DP1061-13	85.909	28.745			NaN	NaN	NaN	0	0	Median	0	0	0	1185	87	1109	2443	5714	5714		1	9606
LYLVSDVLYNSSAK	1	0	Unmodified	1570.8243	0.82427405	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				20.62	20.62	2	2.9574E-06	9683	DP1061-12	118.48	73.347			NaN	NaN	NaN	0	0	Median	6468900	0	6468900	1186	28	1110	2444	5715;5716;5717	5717		3	9606
LYSILQGDSPTK	1	0	Unmodified	1320.6925	0.6925316	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				17.862	17.862	2	0.00018873	6733	DP1061-12	121.6	74.029			NaN	NaN	NaN	0	0	Median	5771500	0	5771500	1187	28	1111	2445	5718;5719	5719		2	9606
LYSPSQIGAFVLMK	1	0	Oxidation (M)	1568.8273	0.82725094	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	3	0			1			21.265	21.265	2	0.0047022	12625	DP1061-13	63.408	47.316			1.7395	1.7914	NaN	1	0	Median	10980000	4376700	6603200	1188	146	1112	2446	5720	5720	181	1	9606
LYTLVTYVPVTTFK	1	0	Unmodified	1643.9174	0.91744615	239	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	21.655	21.655	2	0.0055538	12113	DP1061-15	90.685	54.261			NaN	NaN	NaN	0	0	Median	1465200	0	1465200	1189	239	1113	2447	5721;5722	5721		2	9606
MAAACRCLSLLLLSTCVALLL	0	1	Acetyl (Protein N-term);Oxidation (M)	2406.2507	0.25070044	423	Q9NRI7	PPY2P	Putative pancreatic polypeptide 2	yes	yes	1	1	1	4	0				1		20.452	20.452	3	0.042034	10542	DP1061-14	44.1	13.948			NaN	NaN	NaN	0	0	Median	9965700	0	9965700	1190	423	1114	2448	5723	5723	435	1	9606
MAALEVYVR	0	1	Oxidation (M)	1066.5481	0.54811597	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	4	2				20.819	20.819	2	8.9407E-07	5396	DP1061-11	116.9	65.049			0.96579	0.9808	25.512	5	0	Plateau	334430000	175390000	159040000	1191	287	1115	2449;2450;2451;2452;2453;2454	5724;5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742	5726	294	19	9606
MAALEVYVR	0	1	Unmodified	1050.5532	0.55320134	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	0.471	1	2				18.237	18.237	2	1.9107E-06	6686	DP1061-11	119.41	71.663			0.99233	1.0479	6.0863	2	0	Median	82329000	42451000	39878000	1192	287	1115	2455;2456;2457	5743;5744;5745;5746;5747;5748;5749;5750	5744		8	9606
MADALDNYVIR	0	1	Oxidation (M)	1295.618	0.61798644	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		18.12	18.12	2	1.7443999999999998E-19	8591	DP1061-13	142.92	111.5			0.98549	1.0043	2.7733	2	0	Median	213380000	102210000	111170000	1193	67	1116	2458;2459	5751;5752;5753;5754	5752	76	4	9606
MADALDNYVIR	0	1	Unmodified	1279.6231	0.62307182	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.934	18.934	2	4.3706000000000005E-27	9669	DP1061-13	158.76	128.5			1.084	1.1066	NaN	1	0	Median	54929000	25459000	29470000	1194	67	1116	2460	5755;5756;5757;5758	5758		4	9606
MADEAVCVGPAPTSK	1	0	Oxidation (M)	1547.696	0.69597877	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.38	1.22	1		4	1	2	14.896	14.896	2	6.4277E-39	5908	DP1061-13	167.44	145.45			0.94307	0.96673	7.7757	3	0	Median	137490000	67765000	69727000	1195	67	1117	2461;2462;2463;2464;2465;2466;2467;2468	5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778;5779;5780	5765	77	22	9606
MADEAVCVGPAPTSK	1	0	Unmodified	1531.7011	0.70106415	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			15.436	15.436	2	2.0029E-20	5673	DP1061-13	135.1	135.1			0.82209	0.8466	NaN	1	0	Median	24267000	13513000	10754000	1196	67	1117	2469	5781;5782;5783;5784	5782		4	9606
MADKMDMSLDDIIKLNR	2	1	Acetyl (Protein N-term);2 Oxidation (M)	2081.9795	0.97954719	358	Q86V81	ALYREF	THO complex subunit 4	yes	yes	1	2	2	2	0		1				21.544	21.544	2	0.016066	10627	DP1061-12	67.08	28.12			NaN	NaN	NaN	0	0	Median	49159000	0	49159000	1197	358	1118	2470	5785;5786	5786	378;379	2	9606
MADLEVYK	1	0	Acetyl (Protein N-term);Oxidation (M)	1025.4739	0.47394797	337	Q4KWH8	PLCH1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1	yes	yes	1	1	0	3	0			1			16.816	16.816	2	0.026412	7176	DP1061-13	47.743	17.576			1.2104	1.2465	NaN	1	0	Median	26715000	11554000	15161000	1198	337	1119	2471	5787	5787	366	1	9606
MAGDTEVWKQMFQELMR	1	1	Acetyl (Protein N-term);Oxidation (M)	2156.9693	0.96931686	401	Q9BQQ7	RTP3	Receptor-transporting protein 3	yes	yes	1	1	1	1	0	1					21.235	21.235	2	0.031843	9784	DP1061-11	56.225	22.952			NaN	NaN	NaN	0	0	Median	1609200	0	1609200	1199	401	1120	2472	5788;5789	5789	420	2	9606
MANLTIVTEFILMGFSTNK	1	0	Acetyl (Protein N-term);2 Oxidation (M)	2203.0905	0.090477851	369	Q8NHC5	OR14A16	Olfactory receptor 14A16	yes	yes	1	2	0	2	0		1				27.794	27.794	3	0.029568	17073	DP1061-12	49.395	15.714			NaN	NaN	NaN	0	0	Median	0	0	0	1200	369	1121	2473	5790	5790	389;390	1	9606
MATAVSRPCAGRSR	0	3	Acetyl (Protein N-term);Oxidation (M)	1576.7562	0.75622804	403	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	1	1	2	3	0			1			22.097	22.097	2	0.041193	13698	DP1061-13	51.927	7.6174			NaN	NaN	NaN	0	0	Median	0	0	0	1201	403	1122	2474	5791	5791	421	1	9606
MATGLGEPVYGLSEDEGESR	0	1	Acetyl (Protein N-term);Oxidation (M)	2153.9423	0.94229329	393	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	1	1	0	1	0	1					14.281	14.281	2	0.03372	3440	DP1061-11	57.804	28.791			NaN	NaN	NaN	0	0	Median	0	0	0	1202	393	1123	2475	5792	5792	401	1	9606
MAVTFIGNSTAIQELFK	1	0	Oxidation (M)	1884.9655	0.96553533	77	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	3.5	0.5			1	1		22.622	22.622	2	2.3146000000000004E-161	14253	DP1061-13	262.56	237.22			1.3977	1.3861	26.219	2	0	Median	50169000	19476000	30694000	1203	77	1124	2476;2477	5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804	5795	99	12	9606
MAYVVDLDDEYADTDIPTTLIR	0	1	Oxidation (M)	2544.1942	0.19415088	289	Q13123	IK	Protein Red	yes	yes	0	1	0	3	0			1			22.246	22.246	2	1.5576000000000001E-30	13909	DP1061-13	173.68	151.13			NaN	NaN	NaN	0	0	Median	2824200	0	2824200	1204	289	1125	2478	5805;5806;5807;5808;5809	5806	317	5	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	2	1.11	7	7	2	1	1	20.008	20.008	2;3	3.8385E-160	7428	DP1061-11	254.89	254.89			0.70904	0.72113	6.8089	8	0	Median	681070000	395220000	285850000	1205	287	1126	2479;2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496	5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865;5866;5867;5868	5811	295	59	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term)	2103.0055	0.0055026685	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	3.09	1.38	2	2	2	3	2	20.092	20.092	2;3	6.7685E-84	8619	DP1061-11	197.38	178.33			0.73632	0.76031	8.5032	3	0	Plateau	105990000	62813000	43179000	1206	287	1126	2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507	5869;5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894;5895;5896;5897;5898;5899;5900;5901;5902;5903;5904;5905;5906	5871		38	9606
MDFQHRPGGK	1	1	Acetyl (Protein N-term);Oxidation (M)	1229.5611	0.56114027	326	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	1	1	1	3	0			2			12.564	12.564	2;3	0.011239	2672	DP1061-13	57.55	57.55			1.9925	2.0424	NaN	1	0	Median	48847000	15709000	33138000	1207	326	1127	2508;2509	5907;5908;5909;5910	5908	358	4	9606
MDNYADLSDTELTTLLR	0	1	Acetyl (Protein N-term);Oxidation (M)	2027.9358	0.93575135	180	P50402	EMD	Emerin	yes	yes	1	1	0	4	0				3		24.512	24.512	2	3.2983E-10	14088	DP1061-14	132.31	91.733			NaN	NaN	NaN	0	0	Median	1399700	0	1399700	1208	180	1128	2510;2511;2512	5911;5912;5913;5914	5912	194	4	9606
MDTDLETMDLDQGGEALAPR	0	1	2 Oxidation (M)	2208.9515	0.95147777	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	2	0	1	0	2					18.297	18.297	2	5.1896E-23	6815	DP1061-11	158.81	122.14			NaN	NaN	NaN	0	0	Median	1730100	0	1730100	1209	48	1129	2513;2514	5915;5916	5915	61;62	2	9606
MEEKEDKHQQHK	3	0	Acetyl (Protein N-term)	1607.7362	0.7362041	367	Q8N5S3	C2orf73	Uncharacterized protein C2orf73	yes	yes	1	0	2	5	0					1	19.654	19.654	2	0.0024755	9958	DP1061-15	90.15	52.806			NaN	NaN	NaN	0	0	Median	0	0	0	1210	367	1130	2515	5917	5917		1	9606
MEGGFGSDFGGSGSGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1533.6042	0.60418687	459	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	1	1	0	5	0					1	18.639	18.639	2	1.2855E-09	8830	DP1061-15	131.06	113.59			NaN	NaN	NaN	0	0	Median	9674000	0	9674000	1211	459	1131	2516	5918;5919	5918	457	2	9606
MEGGFGSDFGGSGSGK	1	0	Acetyl (Protein N-term)	1517.6093	0.60927225	459	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	1	0	0	5	0					1	20.511	20.511	2	0.0026668	10876	DP1061-15	94.688	80.39			NaN	NaN	NaN	0	0	Median	0	0	0	1212	459	1131	2517	5920	5920		1	9606
MEGPLSVFGDR	0	1	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	103	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	1	0	3	0			1			22.338	22.338	2	0.0003683	13907	DP1061-13	137.05	98.083			NaN	NaN	NaN	0	0	Median	4670900	0	4670900	1213	103	1132	2518	5921;5922;5923	5921	144	3	9606
MEGSGEQPGPQPQHPGDHR	0	1	Acetyl (Protein N-term);Oxidation (M)	2097.8923	0.89226382	432	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	1	1	0	3	0			1			12.639	12.639	3	0.0043395	2754	DP1061-13	79.92	49.236			NaN	NaN	NaN	0	0	Median	4950300	0	4950300	1214	432	1133	2519	5924;5925;5926	5925	441	3	9606
MEKRLQEAQLYK	2	1	Acetyl (Protein N-term);Oxidation (M)	1593.8185	0.81847717	366	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	yes	yes	1	1	2	3	0			2			23.527	23.527	2	0.021357	15350	DP1061-13	58.246	7.7734			NaN	NaN	NaN	0	0	Median	1896500	0	1896500	1215	366	1134	2520;2521	5927;5928	5927	388	2	9606
METQLQSIFEEVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1737.8495	0.84950252	434	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	1	1	0	2	0		1				25.463	25.463	2	1.7599E-05	15290	DP1061-12	112.43	70.035			NaN	NaN	NaN	0	0	Median	1404300	0	1404300	1216	434	1135	2522	5929;5930;5931	5930	442	3	9606
MEVKPPPGRPQPDSGR	1	2	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	187	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	4	0				1		13.26	13.26	3	0.047831	3506	DP1061-14	56.599	29.668			NaN	NaN	NaN	0	0	Median	3196300	0	3196300	1217	187	1136	2523	5932;5933	5933		2	9606
MFLYNLTLQR	0	1	Oxidation (M)	1313.6802	0.68019277	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	1	0	1					20.18	20.18	2	0.023692	8677	DP1061-11	115.7	62.762			NaN	NaN	NaN	0	0	Median	4317600	0	4317600	1218	321	1137	2524	5934;5935	5934	349	2	9606
MFQVPDSEGGRAGSRAMK	1	2	2 Oxidation (M)	1954.8989	0.89892911	413	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	2	2	2	0		1				27.558	27.558	2	0.046129	16888	DP1061-12	63.473	21.442			NaN	NaN	NaN	0	0	Median	0	0	0	1219	413	1138	2525	5936	5936		1	9606
MGAGMGFGLER	0	1	2 Oxidation (M)	1156.5005	0.50051385	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			15.727	15.727	2	0.0088062	6013	DP1061-13	57.348	35.885			1.1167	1.1429	NaN	1	0	Median	25812000	13412000	12400000	1220	188	1139	2526	5937;5938	5938	207;208	2	9606
MGANSLER	0	1	Unmodified	876.41235	0.41235077	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	no	0	0	0	3	0			1			13.058	13.058	2	0.018585	3229	DP1061-13	85.212	46.42			1.2037	1.2329	NaN	1	0	Median	20326000	8215300	12111000	1221	188	1140	2527	5939;5940;5941	5940		3	9606
MGGGGAMNMGDPYGSGGQK	1	0	3 Oxidation (M)	1818.6971	0.69711776	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	3	0	2	0		1				12.535	12.535	2	2.3579E-11	2353	DP1061-12	140.1	128.54			NaN	NaN	NaN	0	0	Median	4875900	0	4875900	1222	116	1141	2528	5942;5943	5943	155;156;157	2	9606
MGGMEGPFGGGMENMGR	0	1	4 Oxidation (M)	1777.6528	0.6528101	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	4	0	3	0			1			14.808	14.808	2	5.2464E-17	5153	DP1061-13	120.87	120.87			1.1627	1.1881	NaN	1	0	Median	7857400	3432000	4425400	1223	188	1142	2529	5944;5945;5946;5947;5948;5949	5947	209;210;211;212	6	9606
MGGMVSFR	0	1	2 Oxidation (M)	915.39426	0.39425786	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.5	0.5	1	1				13.851	13.851	2	0.020938	3011	DP1061-11	56.721	24.766			0.98263	1.0183	5.9255	2	0	Median	238270000	115780000	122490000	1224	287	1143	2530;2531	5950;5951;5952;5953	5951	296;297	4	9606
MGGMVSFR	0	1	Oxidation (M)	899.39934	0.39934324	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					15.409	15.409	2	0.01116	4000	DP1061-11	77.282	45.979			0.99203	1.0151	2.1295	2	0	Median	112620000	57642000	54979000	1225	287	1143	2532;2533	5954;5955;5956;5957;5958	5955	296;297	5	9606
MGGMVSFR	0	1	Unmodified	883.40443	0.40442862	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.935	16.935	2	0.014902	5399	DP1061-11	87.754	64.231			0.98714	1.0301	NaN	1	0	Median	25982000	13161000	12820000	1226	287	1143	2534	5959;5960;5961	5959		3	9606
MGKTFSQLGSWREDENK	2	1	Acetyl (Protein N-term);Oxidation (M)	2069.9477	0.94765344	384	Q96A25	TMEM106A	Transmembrane protein 106A	yes	yes	1	1	2	5	0					1	15.327	15.327	3	0.027439	5461	DP1061-15	60.489	25.016			NaN	NaN	NaN	0	0	Median	0	0	0	1227	384	1144	2535	5962	5962	397	1	9606
MGLAMGGGGGASFDR	0	1	2 Oxidation (M)	1414.5969	0.59693343	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3.5	0.5			1	1		14.928	14.928	2	6.1996E-05	5146	DP1061-13	85.973	71.412			1.3243	1.3561	NaN	1	0	Median	21880000	9531100	12349000	1228	188	1145	2536;2537	5963;5964;5965;5966;5967	5964	213;214	5	9606
MGLVMDR	0	1	2 Oxidation (M)	852.38336	0.38335882	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			12.544	12.544	2	0.0456	2674	DP1061-13	60.76	28.646			NaN	NaN	NaN	0	0	Median	0	0	0	1229	188	1146	2538	5968	5968		1	9606
MGQMAMGGAMGINNR	0	1	3 Oxidation (M)	1585.6469	0.64693686	318	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	3	0	3	0			2			12.772	12.772	2	0.0013478	2947	DP1061-13	94.297	58.632			NaN	NaN	NaN	0	0	Median	0	0	0	1230	318	1147	2539;2540	5969;5970	5969	341;342;343	2	9606
MHLYLGAAK	1	0	Unmodified	1002.5321	0.53207197	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.5	0.5	1	1				15.68	15.68	2	0.0032336	4364	DP1061-11	97.602	71			1.1478	1.2139	11.33	2	0	Median	84706000	36793000	47913000	1231	287;26	1148	2541;2542	5971;5972;5973;5974	5972		4	9606
MHLYLGAAK	1	0	Oxidation (M)	1018.527	0.52698659	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	2	0		1				13.998	13.998	2	0.00018422	3314	DP1061-12	106.42	70.977			1.1143	1.1708	NaN	1	0	Median	56401000	28455000	27946000	1232	287;26	1148	2543	5975;5976;5977	5976	23	3	9606
MIAGQVLDINLAAEPK	1	0	Oxidation (M)	1697.9022	0.9022068	79	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		19.691	19.691	2	1.1394999999999999E-21	9795	DP1061-14	138.24	81.071			1.9308	1.8441	NaN	1	0	Median	12812000	4260300	8552200	1233	79	1149	2544	5978;5979;5980;5981	5981	104	4	9606
MIAGQVLDINLAAEPK	1	0	Unmodified	1681.9073	0.90729217	79	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.444	20.444	2	7.1057E-09	10635	DP1061-14	128.57	85.763			NaN	NaN	NaN	0	0	Median	2026600	0	2026600	1234	79	1149	2545	5982;5983	5982		2	9606
MIDMLAANSGR	0	1	Oxidation (M)	1193.5533	0.5532777	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	2	0		1				16.28	16.28	2	0.021899	5274	DP1061-12	86.624	47.476			NaN	NaN	NaN	0	0	Median	4573400	0	4573400	1235	352	1150	2546	5984	5984	371	1	9606
MINTDLSR	0	1	Oxidation (M)	964.46478	0.46478027	141	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	3	0			1			13.75	13.75	2	0.024862	4027	DP1061-13	116.88	36.422			NaN	NaN	NaN	0	0	Median	0	0	0	1236	141	1151	2547	5985	5985	174	1	9606
MISAAQLLDELMGR	0	1	Acetyl (Protein N-term)	1588.7953	0.79529888	54	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	0	0	1	0	1					18.375	18.375	2	0.044434	6903	DP1061-11	63.32	13.605			NaN	NaN	NaN	0	0	Median	0	0	0	1237	54	1152	2548	5986	5986		1	9606
MISAAQLLDELMGR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1620.7851	0.78512813	54	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	2	0	4	0				1		25.48	25.48	2	1.0566E-06	14738	DP1061-14	114.86	78.191			NaN	NaN	NaN	0	0	Median	820290	0	820290	1238	54	1152	2549	5987	5987	64;65	1	9606
MIVDPVEPHGEMK	1	0	2 Oxidation (M)	1512.6953	0.69525049	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	2	0	2	0		1				14.116	14.116	3	0.023263	3531	DP1061-12	61.038	27.077			NaN	NaN	NaN	0	0	Median	3997600	0	3997600	1239	292	1153	2550	5988;5989	5988	321;322	2	9606
MKEIAEAYLGK	2	0	Oxidation (M)	1267.6482	0.64822394	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			14.996	14.996	3	0.028374	5199	DP1061-13	65.234	40.396			NaN	NaN	NaN	0	0	Median	9803600	0	9803600	1240	88	1154	2551	5990	5990	115	1	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	1	1	Oxidation (M)	3275.6173	0.61726475	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			21.934	21.934	3	0.00030472	13521	DP1061-13	78.311	50.536			NaN	NaN	NaN	0	0	Median	7812500	0	7812500	1241	85	1155	2552	5991;5992;5993	5992	111	3	9606
MKETAENYLGHTAK	2	0	Oxidation (M)	1607.7614	0.76135622	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			12.746	12.746	3	3.7607E-06	2867	DP1061-13	93.424	93.424			2.2726	2.2937	NaN	1	0	Median	18599000	5587900	13011000	1242	146	1156	2553	5994;5995	5995	182	2	9606
MKETAENYLGHTAKNAVITVPAYFNDSQR	2	1	Unmodified	3267.5983	0.59826064	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	2	3	0			1			21.934	21.934	3	0.0034983	13583	DP1061-13	60.176	7.9074			NaN	NaN	NaN	0	0	Median	7812500	0	7812500	1243	146	1157	2554	5996	5996		1	9606
MKVELCSFSGYK	2	0	Oxidation (M)	1463.6789	0.67887214	261	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	1	5	0					1	16.051	16.051	2	0.025092	6133	DP1061-15	86.189	37.749			NaN	NaN	NaN	0	0	Median	0	0	0	1244	261	1158	2555	5997	5997	268	1	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	192	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	1	0	3	0			1			20.36	20.36	2	0.00067769	11472	DP1061-13	94.297	51.553			NaN	NaN	NaN	0	0	Median	7123000	0	7123000	1245	192	1159	2556	5998;5999	5998	218	2	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term)	1360.6697	0.66968766	192	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	0	0	3	0			1			22.219	22.219	2	0.0015412	13809	DP1061-13	95.483	53.088			NaN	NaN	NaN	0	0	Median	4319700	0	4319700	1246	192	1159	2557	6000	6000		1	9606
MLQPCGPPADKPEEN	1	0	Oxidation (M)	1697.7389	0.73890622	404	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	1	1	5	0					1	14.141	14.141	2	8.3833E-08	4330	DP1061-15	131.42	58.811			NaN	NaN	NaN	0	0	Median	4813800	0	4813800	1247	404	1160	2558	6001;6002;6003	6002	422	3	9606
MMGHRPVLVLSQNTK	1	1	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	172	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	2	1	3	0			1			15.229	15.229	3	0.047044	5531	DP1061-13	55.414	8.2256			NaN	NaN	NaN	0	0	Median	14083000	0	14083000	1248	172	1161	2559	6004	6004		1	9606
MMSPAQSTMPGQPTLMSNPAAAVGMIPGK	1	0	3 Oxidation (M)	2948.3574	0.35742671	24	O00512	BCL9	B-cell CLL/lymphoma 9 protein	yes	yes	0	3	0	5	0					2	21.693	21.693	3	0.015604	12105	DP1061-15	56.468	27.021			NaN	NaN	NaN	0	0	Median	0	0	0	1249	24	1162	2560;2561	6005;6006	6005	12;13;14;15	2	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	2 Oxidation (M)	2881.2146	0.21458552	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2	0.632	1	3	1			20.602	20.602	3	5.3879E-29	11731	DP1061-13	140.84	134.58			0.63378	0.67775	6.0796	3	0	Median	97269000	57603000	39667000	1250	287	1163	2562;2563;2564;2565;2566	6007;6008;6009;6010;6011;6012;6013;6014;6015;6016;6017;6018;6019;6020;6021;6022;6023;6024;6025;6026;6027;6028;6029	6025	298;299	23	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	Oxidation (M)	2865.2197	0.2196709	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.33	0.471		2	1			21.149	21.149	3	6.2106E-29	10075	DP1061-12	139.69	139.69			0.65686	0.71202	40.122	3	0	Median	54558000	33106000	21452000	1251	287	1163	2567;2568;2569	6030;6031;6032;6033;6034;6035;6036;6037;6038;6039;6040;6041;6042;6043;6044	6031	298;299	15	9606
MNEAFGDTK	1	0	Oxidation (M)	1027.4281	0.42806041	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	0	2	0		1				12.597	12.597	2	0.042199	2371	DP1061-12	102.62	64.461			NaN	NaN	NaN	0	0	Median	15409000	0	15409000	1252	292	1164	2570	6045;6046	6045	323	2	9606
MPIIPFLL	0	0	Oxidation (M)	958.55616	0.55616146	427	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	1	0	4	0				1		26.276	26.276	1	0.01888	15211	DP1061-14	78.002	54.03			NaN	NaN	NaN	0	0	Median	0	0	0	1253	427	1165	2571	6047	6047	438	1	9606
MPSGEFAR	0	1	Oxidation (M)	909.40145	0.40145173	92	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	1	0	4	0				1		12.676	12.676	2	0.0099943	2950	DP1061-14	79.451	42.357			1.0746	1.0979	NaN	1	0	Median	6458200	3243400	3214800	1254	92	1166	2572	6048;6049	6049	139	2	9606
MPVIKPDIANWELSVK	2	0	Oxidation (M)	1854.9914	0.99135615	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3.25	0.433			3	1		20.68	20.68	2;3	6.160299999999999E-22	10094	DP1061-13	137.79	117.03			0.84641	0.85453	34.46	4	0	Median	215560000	113770000	101790000	1255	67	1167	2573;2574;2575;2576	6050;6051;6052;6053;6054;6055;6056;6057;6058;6059;6060;6061	6056	78	12	9606
MPVIKPDIANWELSVK	2	0	Unmodified	1838.9964	0.99644153	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.197	20.197	3	5.6304E-10	11343	DP1061-13	105.14	105.14			0.87723	0.88539	NaN	1	0	Median	28643000	14877000	13766000	1256	67	1167	2577	6062;6063;6064;6065	6064		4	9606
MQGQEAVLAMSSR	0	1	2 Oxidation (M)	1438.6544	0.65444831	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	2	0	1	0	1					14.109	14.109	2	0.0030754	3266	DP1061-11	99.539	72.21			NaN	NaN	NaN	0	0	Median	6136800	0	6136800	1257	321	1168	2578	6066;6067	6067	350;351	2	9606
MQGQEAVLAMSSR	0	1	Oxidation (M)	1422.6595	0.65953368	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	1.33	0.471	2	1				15.711	15.711	2	1.1992E-05	4677	DP1061-11	145.46	81.083			NaN	NaN	NaN	0	0	Median	11165000	0	11165000	1258	321	1168	2579;2580;2581	6068;6069;6070;6071	6070	350;351	4	9606
MQGQEAVLAMSSR	0	1	Unmodified	1406.6646	0.66461906	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					16.976	16.976	2	0.00015588	5461	DP1061-11	110.93	71.084			NaN	NaN	NaN	0	0	Median	2698400	0	2698400	1259	321	1168	2582	6072;6073	6073		2	9606
MQLDNPSK	1	0	Unmodified	931.44332	0.44331654	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				13.511	13.511	2	8.7742E-43	2773	DP1061-11	191.63	108.25			1.1656	1.2328	40.947	2	0	Median	108880000	54437000	54442000	1260	287	1169	2583;2584	6074;6075;6076;6077;6078;6079	6075		6	9606
MQMHKDGDVYKYFSR	2	1	2 Oxidation (M)	1935.8608	0.86075269	178	P49917	LIG4	DNA ligase 4	yes	yes	0	2	2	5	0					1	15.242	15.242	2	0.0023077	5257	DP1061-15	90.149	39.014			NaN	NaN	NaN	0	0	Median	3308199999.9999995	0	3308199999.9999995	1261	178	1170	2585	6080;6081;6082	6080	192;193	3	9606
MREIVHLQAGQCGNQIGAK	1	1	Unmodified	2109.0572	0.057161084	253	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	1	3	0			1			15.121	15.121	3	1.0124E-07	5460	DP1061-13	93.152	0			1.7005	1.7431	NaN	1	0	Median	9861400	5410700	4450700	1262	253	1171	2586	6083;6084	6083		2	9606
MSATFIGNSTAIQELFK	1	0	Oxidation (M)	1872.9291	0.92914983	253;305	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.5	0.5			1	1		22.054	22.054	2	1.5421E-118	13593	DP1061-13	231.69	52.235			1.8649	1.8495	4.6537	2	0	Median	72318000	28842000	43476000	1263	253;305	1172	2587;2588	6085;6086;6087;6088;6089;6090;6091;6092	6088	261	8	9606
MSATFIGNSTAIQELFKR	1	1	Oxidation (M)	2029.0303	0.030260856	253;305	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	1	3	0			1			20.648	20.648	3	1.602E-24	11866	DP1061-13	132.13	18.658			1.7927	1.8376	NaN	1	0	Median	15283000	4281400	11001000	1264	253;305	1173	2589	6093;6094	6094	261	2	9606
MSFSSNLNHYGMTHVASVSDVLLDNSFTPPCQR	0	1	2 Oxidation (M)	3742.6814	0.6814147	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2	0		1				19.993	19.993	4	9.254E-06	8965	DP1061-12	49.09	40.102			0.94175	1.0208	NaN	1	0	Median	44375000	22902000	21473000	1265	287	1174	2590	6095	6095	300;301	1	9606
MSMKEVDEQMLNVQNK	2	0	3 Oxidation (M)	1970.8747	0.87474777	253;77;305	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	3	1	3.5	0.5			2	2		13.417	13.417	2;3	8.8055E-07	3525	DP1061-13	89.136	89.136			1.416	1.4977	24.295	2	0	Median	37234000	12730000	24504000	1266	77;253;305	1175	2591;2592;2593;2594	6096;6097;6098;6099;6100;6101;6102;6103	6097	93;100;101	8	9606
MSQAEFEKAAEEVR	1	1	Acetyl (Protein N-term);Oxidation (M)	1681.7618	0.76175015	76	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	1	1	3	0			2			14.916	14.916	2	0.010552	5207	DP1061-13	79.489	18.328			NaN	NaN	NaN	0	0	Median	0	0	0	1267	76	1176	2595;2596	6104;6105	6104	91	2	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Oxidation (M)	2242.2031	0.20313984	74	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4	0				4		22.754	22.754	2;3	2.6254E-11	12902	DP1061-14	134.9	95.242			NaN	NaN	NaN	0	0	Median	9560400	0	9560400	1268	74	1177	2597;2598;2599;2600	6106;6107;6108;6109;6110;6111;6112	6112	89	7	9606
MTDQEAIQDLWQWR	0	1	Oxidation (M)	1834.8308	0.83083277	74	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4	0				1		22.312	22.312	2	7.4966E-11	12555	DP1061-14	147.62	101.96			NaN	NaN	NaN	0	0	Median	0	0	0	1269	74	1178	2601	6113	6113	90	1	9606
MTPPIKDLLPR	1	1	Oxidation (M)	1295.7271	0.72714296	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	1	2	0		1				17.406	17.406	3	0.0019385	6291	DP1061-12	96.113	80.574			NaN	NaN	NaN	0	0	Median	18852000	0	18852000	1270	46	1179	2602	6114;6115	6114	52	2	9606
MTQNPNYYNLQGISHR	0	1	Oxidation (M)	1950.9006	0.90064367	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					16.334	16.334	3	0.0326	4901	DP1061-11	60.489	17.173			NaN	NaN	NaN	0	0	Median	3394400	0	3394400	1271	48	1180	2603	6116	6116	63	1	9606
MTVPISITNPDLLR	0	1	Oxidation (M)	1584.8545	0.85452832	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.961	19.961	2	4.7304E-38	8505	DP1061-11	162.26	162.26			0.76627	0.83078	NaN	1	0	Median	6176600	3089000	3087700	1272	26	1181	2604	6117;6118;6119;6120;6121	6120	24	5	9606
MVAAVACAQVPK	1	0	Oxidation (M)	1259.6366	0.6366134	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			4	2		15.103	15.103	2	0.0004823	4911	DP1061-13	118.74	80.583			NaN	NaN	NaN	0	0	Median	112430000	10416000	102010000	1273	417	1182	2605;2606;2607;2608;2609;2610	6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133	6123	427	12	9606
MVAAVACAQVPK	1	0	Unmodified	1243.6417	0.64169877	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			3			15.72	15.72	2	3.839E-05	5878	DP1061-13	138.54	102.1			NaN	NaN	NaN	0	0	Median	32382000	32382000	0	1274	417	1182	2611;2612;2613	6134;6135;6136;6137	6134		4	9606
MVPAGMGAGLER	0	1	2 Oxidation (M)	1219.5689	0.56892776	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			13.621	13.621	2	0.0072235	3723	DP1061-13	57.347	15.157			1.0931	1.117	NaN	1	0	Median	40418000	19070000	21348000	1275	188	1183	2614	6138;6139	6138	215;216	2	9606
MVQEAEKYKAEDEVQR	2	1	Oxidation (M)	1967.9259	0.92585536	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	2	3	0			2			12.931	12.931	3;4	1.3002E-21	3003	DP1061-13	131.24	114.02			4.5625	4.6178	NaN	1	0	Median	45146000	5923800	39223000	1276	85	1184	2615;2616	6140;6141;6142;6143;6144;6145;6146;6147	6141	112	8	9606
MVQEAEKYKAEDEVQR	2	1	Unmodified	1951.9309	0.93094074	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			13.553	13.553	3	0.0019463	3788	DP1061-13	97.767	68.148			NaN	NaN	NaN	0	0	Median	7319700	0	7319700	1277	85	1184	2617	6148;6149	6149		2	9606
MWRLPGLLGR	0	2	Acetyl (Protein N-term);Oxidation (M)	1255.6859	0.68594685	306	Q14154	KIAA0141	Death ligand signal enhancer	yes	yes	1	1	1	4	0				1		20.743	20.743	2	0.017815	10915	DP1061-14	62.2	8.7065			NaN	NaN	NaN	0	0	Median	1750900	0	1750900	1278	306	1185	2618	6150	6150	333	1	9606
MYSYPAR	0	1	Oxidation (M)	902.39564	0.39563807	79	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		13.659	13.659	2	0.034682	3927	DP1061-14	62.714	43.909			1.9918	2.0352	NaN	1	0	Median	8990400	2990300	6000100	1279	79	1186	2619	6151;6152	6152	105	2	9606
MYVFGGWVPLVMDDVK	1	0	2 Oxidation (M)	1886.8947	0.89467858	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	2	0	2	0		1				22.952	22.952	2	0.027945	12341	DP1061-12	96.103	63.104			NaN	NaN	NaN	0	0	Median	3433100	0	3433100	1280	185	1187	2620	6153	6153	197;198	1	9606
MYVFGGWVPLVMDDVK	1	0	Oxidation (M)	1870.8998	0.89976395	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	1	0	2	0		2				24.325	24.325	2	0.008923	14067	DP1061-12	99.215	65.255			NaN	NaN	NaN	0	0	Median	1671400	0	1671400	1281	185	1187	2621;2622	6154;6155	6154	197;198	2	9606
NACDHLSGFNVCNR	0	1	Unmodified	1662.6991	0.69910709	450	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					2	15.629	15.629	2;3	3.9334E-09	5698	DP1061-15	142.76	117.14			NaN	NaN	NaN	0	0	Median	33056000	0	33056000	1282	450	1188	2623;2624	6156;6157;6158;6159	6159		4	9606
NAGNCLSPAVIVGLLK	1	0	Unmodified	1624.8971	0.89706184	35	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			22.423	22.423	2	0.0010964	14096	DP1061-13	93.623	73.419			1.083	1.1152	NaN	1	0	Median	3644000	1956100	1687900	1283	35	1189	2625	6160;6161	6160		2	9606
NAHSATTWSGQYVGGAEAR	0	1	Unmodified	1961.898	0.89800113	21	CON__Streptavidin			yes	yes	0	0	0	4.39	1.1	1	2	3	3	22	22.445	22.445	2;3;4	1.0607000000000001E-220	15784	DP1061-15	403.78	345.15		+	NaN	NaN	NaN	0	0	Median	13986000000	13986000000	0	1284	21	1190	2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638;2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656	6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218	6200		57	
NALESYAFNMK	1	0	Oxidation (M)	1302.5914	0.59143734	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			17.456	17.456	2	1.126E-08	7812	DP1061-13	115.71	115.71			4.4965	4.6306	NaN	1	0	Median	72646000	12418000	60228000	1285	85	1191	2657	6219;6220;6221;6222;6223;6224	6219	113	6	9606
NALESYAFNMK	1	0	Unmodified	1286.5965	0.59652272	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			18.899	18.899	2	6.4409E-13	9670	DP1061-13	131.62	109.62			4.2768	4.4043	NaN	1	0	Median	30164000	5659200	24505000	1286	85	1191	2658	6225;6226	6226		2	9606
NALLQLTDSQIADVAR	0	1	Unmodified	1726.9214	0.92136233	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					20.963	20.963	2	4.9493E-06	9541	DP1061-11	122.35	67.033			NaN	NaN	NaN	0	0	Median	0	0	0	1287	48	1192	2659	6227	6227		1	9606
NALMLALAQAGVSGINNGVLSLR	0	1	Oxidation (M)	2297.2525	0.25254965	469				yes	yes	0	1	0	3	0			1			24.052	24.052	2	0.042053	15909	DP1061-13	71.879	20.982	+		NaN	NaN	NaN	0	0	Median	2407800	0	2407800	1288	469	1193	2660	6228	6228	464	1	9606
NAVITVPAYFNDSQR	0	1	Unmodified	1693.8424	0.84238373	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.448	19.448	2	1.3695E-37	10407	DP1061-13	156.01	156.01			1.9875	2.0332	NaN	1	0	Median	29465000	8215400	21249000	1289	146	1194	2661	6229;6230;6231	6230		3	9606
NDAPTPGTSTTPGLR	0	1	Unmodified	1483.7267	0.72668527	274	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	3	0			2			14.762	14.762	2	0.010248	5069	DP1061-13	89.43	42.243			NaN	NaN	NaN	0	0	Median	3082200	0	3082200	1290	274	1195	2662;2663	6232;6233;6234	6232		3	9606
NDEELNKLLGK	2	0	Unmodified	1271.6721	0.67213051	84	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	yes	no	0	0	1	5	0					2	17.07	17.07	2;3	4.6157E-08	7172	DP1061-15	136.96	80.043			1.6096	1.6506	3.6928	2	0	Median	37180000	13413000	23767000	1291	84	1196	2664;2665	6235;6236;6237;6238;6239;6240;6241;6242	6242		8	9606
NDEELNKLLGR	1	1	Unmodified	1299.6783	0.67827852	64	Q93077;Q7L7L0;P04908	HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	yes	no	0	0	1	5	0					2	17.523	17.523	2;3	7.1971E-05	7653	DP1061-15	111.06	77.798			1.3344	1.2817	2.9674	2	0	Median	14837000	6157600	8679800	1292	64	1197	2666;2667	6243;6244;6245;6246	6245		4	9606
NDLAVVDVR	0	1	Unmodified	999.53491	0.53490874	108	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0			1			16.451	16.451	2	0.033754	6804	DP1061-13	89.029	27.338			NaN	NaN	NaN	0	0	Median	0	0	0	1293	108	1198	2668	6247	6247		1	9606
NDLSPASSGNAVYDFFIGR	0	1	Unmodified	2028.9541	0.95411902	310	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	4	0				1		23.127	23.127	2	0.0018173	13175	DP1061-14	101.75	73.456			NaN	NaN	NaN	0	0	Median	1640300	0	1640300	1294	310	1199	2669	6248;6249;6250	6249		3	9606
NELESYAYSLK	1	0	Unmodified	1315.6296	0.62959699	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			18.482	18.482	2	0.0073668	9248	DP1061-13	91.265	15.096			NaN	NaN	NaN	0	0	Median	9183200	0	9183200	1295	87	1200	2670	6251	6251		1	9606
NENQLIIFADDTYPR	0	1	Unmodified	1807.8741	0.87407779	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2.4	1.02	1	2	1	1		21.128	21.128	2	2.7804999999999997E-28	12415	DP1061-13	145.29	121.69			2.773	2.8427	NaN	1	0	Median	27579000	3055200	24524000	1296	321	1201	2671;2672;2673;2674;2675	6252;6253;6254;6255;6256;6257;6258;6259	6258		8	9606
NFDLTAIPCANHK	1	0	Unmodified	1499.7191	0.71909747	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.6	0.49	2	3				17.695	17.695	2;3	5.4062E-42	6051	DP1061-11	172.27	172.27			0.88275	0.93974	2.3377	4	0	Median	260380000	139500000	120880000	1297	287	1202	2676;2677;2678;2679;2680	6260;6261;6262;6263;6264;6265;6266;6267;6268;6269;6270;6271;6272;6273;6274;6275;6276;6277;6278	6264		19	9606
NFGIGQDIQPK	1	0	Unmodified	1215.6248	0.62478638	226	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		17.06	17.06	2	0.0031106	7025	DP1061-14	83.783	57.341			1.7927	1.7122	NaN	1	0	Median	7235500	3053800	4181600	1298	226	1203	2681	6279	6279		1	9606
NFILDQTNVSAAAQR	0	1	Unmodified	1646.8376	0.8376327	266	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		2				18.421	18.421	2	6.8691E-06	7239	DP1061-12	119.39	65.819			NaN	NaN	NaN	0	0	Median	7821300	0	7821300	1299	266	1204	2682;2683	6280;6281;6282	6281		3	9606
NFSGTASTSLLGPPPGLLTPPVATELSQNAR	0	1	Unmodified	3092.6142	0.61422828	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				22.924	22.924	3	0.00011493	12349	DP1061-12	81.406	63.311			NaN	NaN	NaN	0	0	Median	4357800	0	4357800	1300	364	1205	2684	6283;6284;6285	6284		3	9606
NFYFLEMNTR	0	1	Oxidation (M)	1349.6074	0.60742176	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.628	19.628	2	2.197E-05	10473	DP1061-13	105.52	67.245			0.95931	0.9784	NaN	1	0	Median	73272000	35588000	37683000	1301	67	1206	2685	6286;6287;6288;6289;6290;6291	6289	74	6	9606
NFYFLEMNTR	0	1	Unmodified	1333.6125	0.61250714	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.031	21.031	2	0.0026347	12412	DP1061-13	90.15	57.627			0.57883	0.59177	NaN	1	0	Median	35494000	21356000	14138000	1302	67	1206	2686	6292;6293;6294;6295	6294		4	9606
NFYQEHPDLAR	0	1	Unmodified	1388.6473	0.64731274	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			15.397	15.397	3	0.045002	5746	DP1061-13	64.82	42.827			NaN	NaN	NaN	0	0	Median	14160000	0	14160000	1303	102	1207	2687	6296	6296		1	9606
NFYVEVPELAK	1	0	Unmodified	1307.6762	0.67615325	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				20.131	20.131	2	0.0081789	9189	DP1061-12	89.08	51.531			NaN	NaN	NaN	0	0	Median	8928600	0	8928600	1304	352	1208	2688	6297	6297		1	9606
NGIAFMGPPSQAMWALGDK	1	0	2 Oxidation (M)	2021.9339	0.93391763	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.5	0.5	1	1				20.079	20.079	2	9.1481E-18	8535	DP1061-11	120.7	105.71			0.83699	0.89102	NaN	1	0	Median	18395000	10246000	8149300	1305	287	1209	2689;2690	6298;6299;6300;6301;6302;6303	6300	302;303	6	9606
NGIAFMGPPSQAMWALGDK	1	0	Oxidation (M)	2005.939	0.93900301	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.276	21.276	2	5.0612E-12	9809	DP1061-11	111.81	99.5			0.92226	0.9818	NaN	1	0	Median	6234300	3237300	2996900	1306	287	1209	2691	6304;6305;6306;6307;6308;6309	6306	302;303	6	9606
NGIAFMGPPSQAMWALGDK	1	0	Unmodified	1989.9441	0.94408839	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				22.422	22.422	2	0.011503	11810	DP1061-12	91.355	55.581			NaN	NaN	NaN	0	0	Median	3678300	3678300	0	1307	287	1209	2692	6310	6310		1	9606
NHEEEMKDLR	1	1	Unmodified	1299.5877	0.58774895	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	1.58	1	1		1	1	12.492	12.492	3	0.014179	2264	DP1061-12	106.62	83.15		+	NaN	NaN	NaN	0	0	Median	18726000	18726000	0	1308	15	1210	2693;2694;2695;2696	6311;6312;6313;6314;6315	6313		5	9606
NHPGLLLMDTTFR	0	1	Oxidation (M)	1529.766	0.76604767	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	0.5		2	2			17.741	17.741	2;3	6.0013E-08	6557	DP1061-12	104.81	104.81			0.8495	0.92084	19.148	3	0	Plateau	302340000	162860000	139480000	1309	89	1211	2697;2698;2699;2700	6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326	6316	133	10	9606
NHPGLLLMDTTFR	0	1	Unmodified	1513.7711	0.77113304	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.25	0.433		3	1			19.399	19.399	2;3	6.5517E-12	9396	DP1061-12	120.59	120.59			0.90284	0.95176	3.3832	2	0	Median	124310000	72649000	51662000	1310	89	1211	2701;2702;2703;2704	6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338	6333		12	9606
NIAQIAVVMGSCTAGGAYVPAMADENIIVR	0	1	2 Oxidation (M)	3122.5199	0.51987566	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	2	0	3	0			1			20.686	20.686	3	1.8602E-30	11864	DP1061-13	135.03	108.9			1.0977	1.1216	NaN	1	0	Median	41393000	21459000	19934000	1311	417	1212	2705	6339;6340;6341;6342;6343	6341	428;429	5	9606
NIDDGTSDRPYSHALVAGIDR	0	2	Unmodified	2271.088	0.087986745	206	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	5	0					1	16.61	16.61	4	0.0037032	6695	DP1061-15	54.225	36.984			1.314	1.2756	NaN	1	0	Median	8585500	3533400	5052200	1312	206	1213	2706	6344;6345	6344		2	9606
NIEDVIAQGIGK	1	0	Unmodified	1255.6772	0.67721588	70	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	19.995	19.995	2	2.0265E-07	10294	DP1061-15	112.71	72.653			1.6895	1.5092	NaN	1	0	Median	6573100	2714600	3858400	1313	70	1214	2707	6346;6347;6348;6349	6349		4	9606
NIEELQQQNQR	0	1	Unmodified	1398.6852	0.68515481	95	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	0	2					14.381	14.381	2	1.1373E-08	3517	DP1061-11	153.24	92.083			NaN	NaN	NaN	0	0	Median	0	0	0	1314	95	1215	2708;2709	6350;6351	6350		2	9606
NIEMTQEDVR	0	1	Unmodified	1233.566	0.56595087	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					15.119	15.119	2	0.010978	4034	DP1061-11	117.89	54.356			NaN	NaN	NaN	0	0	Median	1736800	0	1736800	1315	48	1216	2710	6352;6353;6354	6352		3	9606
NIGVDNPAAK	1	0	Unmodified	997.51926	0.51925868	259	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			13.609	13.609	2	0.011174	3815	DP1061-13	98.582	53.501			NaN	NaN	NaN	0	0	Median	8831400	0	8831400	1316	259	1217	2711	6355;6356	6356		2	9606
NIIVGFAR	0	1	Unmodified	888.51814	0.51813647	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.807	17.807	2	0.0001542	8194	DP1061-13	114.19	38.875			1.1057	1.126	1.0727	2	0	Median	322810000	147270000	175540000	1317	68	1218	2712;2713	6357;6358;6359;6360;6361;6362;6363	6358		7	9606
NILLTNEQLESAR	0	1	Unmodified	1499.7944	0.79437091	416	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		17.959	17.959	2	2.174E-23	7986	DP1061-14	146.71	117.16			1.0025	1.0243	NaN	1	0	Median	6436800	2981600	3455200	1318	416	1219	2714	6364;6365;6366;6367;6368	6365		5	9606
NIPGITLLNVSK	1	0	Unmodified	1267.75	0.7499869	141	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			20.159	20.159	2	0.0015896	11187	DP1061-13	84.687	38.529			1.6339	1.6826	NaN	1	0	Median	15852000	5322000	10530000	1319	141	1220	2715	6369;6370;6371;6372;6373	6371		5	9606
NIPLLFLQNITGFMVGR	0	1	Oxidation (M)	1948.0604	0.060438772	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		25.234	25.234	2	2.4152000000000003E-84	16902	DP1061-13	204.85	204.85			0.95335	0.97583	12.633	2	0	Median	17832000	9268800	8563600	1320	417	1221	2716;2717	6374;6375;6376;6377;6378;6379;6380;6381;6382;6383	6377	430	10	9606
NIVEAAAVR	0	1	Unmodified	941.52943	0.52942943	236	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	5	0					1	14.76	14.76	2	0.0088656	4890	DP1061-15	87.696	33.085			0.99321	0.93288	NaN	1	0	Median	21622000	10847000	10775000	1321	236	1222	2718	6384;6385;6386;6387	6385		4	9606
NKFPGDSVVTGR	1	1	Unmodified	1275.6571	0.65714914	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.25	0.433			3	1		14.834	14.834	2;3	1.7393E-17	4918	DP1061-13	117.2	96.996			0.9139	0.9368	10.454	4	0	Median	143660000	70517000	73144000	1322	68	1223	2719;2720;2721;2722	6388;6389;6390;6391;6392;6393;6394;6395;6396	6393		9	9606
NKLNDLEDALQQAK	2	0	Unmodified	1598.8264	0.82639932	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	4.5	0.5				2	2	18.432	18.432	2;3	4.3398E-09	8587	DP1061-15	151.79	104.97		+	NaN	NaN	NaN	0	0	Median	11079000	11079000	0	1323	60	1224	2723;2724;2725;2726	6397;6398;6399;6400;6401;6402	6400		6	9606
NKLNDLEEALQQAK	2	0	Unmodified	1612.842	0.84204938	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	5	0					2	18.851	18.851	2;3	2.3861E-16	9069	DP1061-15	179.19	127.25		+	NaN	NaN	NaN	0	0	Median	13675000	13675000	0	1324	17	1225	2727;2728	6403;6404;6405	6403		3	9606
NKYEDEINKR	2	1	Unmodified	1307.647	0.64697839	60;19;12	P05787;CON__P05787;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT8;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 1	no	no	0	0	2	2.33	1.25	1	1		1		12.66	12.66	3	0.00054063	2758	DP1061-14	146.11	123.1		+	NaN	NaN	NaN	0	0	Median	82573000	82573000	0	1325	12;19;60	1226	2729;2730;2731	6406;6407;6408;6409;6410;6411	6411		6	9606
NLDIERPTYTNLNR	0	2	Unmodified	1717.8747	0.87474649	252;400	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	3.33	0.471			2	1		16.635	16.635	2;3	2.5496E-06	6975	DP1061-13	98	98			1.4094	1.3902	1.784	2	0	Median	205770000	79188000	126590000	1326	252;400	1227	2732;2733;2734	6412;6413;6414;6415;6416;6417;6418;6419	6415		8	9606
NLDLDSIIAEVK	1	0	Unmodified	1328.7187	0.71874635	17	CON__P35908v2;P35908;CON__P35908;Q5XKE5;CON__Q5XKE5;CON__O95678;O95678	KRT2;KRT79;KRT75	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 75	no	no	0	0	0	3	1.41	1	1	1	1	1	22.49	22.49	2	2.9796E-09	12732	DP1061-15	167.09	112.11		+	NaN	NaN	NaN	0	0	Median	58213000	58213000	0	1327	17	1228	2735;2736;2737;2738;2739	6420;6421;6422;6423;6424;6425;6426;6427;6428	6428		9	9606
NLITDICTEQCTLSDQLLPK	1	0	Unmodified	2361.1556	0.1555973	442	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		2				23.353	23.353	2	0.0059403	12851	DP1061-12	85.163	51.546			NaN	NaN	NaN	0	0	Median	2653800	0	2653800	1328	442	1229	2740;2741	6429;6430	6430		2	9606
NLLALIHR	0	1	Unmodified	948.58688	0.58688473	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				18.546	18.546	2	0.032907	7359	DP1061-12	91.906	44.163			NaN	NaN	NaN	0	0	Median	16951000	0	16951000	1329	28	1230	2742	6431;6432	6432		2	9606
NLLTVTSSDEMMK	1	0	2 Oxidation (M)	1499.6847	0.68474538	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	1	0	1					16.292	16.292	2	0.018332	4929	DP1061-11	71.451	9.6712			NaN	NaN	NaN	0	0	Median	0	0	0	1330	260	1231	2743	6433	6433	265;266	1	9606
NLLVTMLIDQLCGR	0	1	Oxidation (M)	1660.864	0.86404715	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.25	0.433	3	1				24.189	24.189	2	1.4115999999999999E-28	13742	DP1061-12	147.72	147.72			0.95602	1.0363	NaN	1	0	Median	17333000	9106300	8227200	1331	287	1232	2744;2745;2746;2747	6434;6435;6436;6437;6438;6439;6440	6439	304	7	9606
NLPFDFTWK	1	0	Unmodified	1166.576	0.57604528	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			22.226	22.226	2	0.012734	13746	DP1061-13	82.75	82.75			1.103	1.1359	NaN	1	0	Median	14065000	6814800	7250500	1332	188	1233	2748	6441;6442;6443;6444	6442		4	9606
NLPLPPPPPPR	0	1	Unmodified	1193.6921	0.69207809	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			17.464	17.464	2	0.0053164	7853	DP1061-13	117.04	56.6			NaN	NaN	NaN	0	0	Median	0	0	0	1333	209	1234	2749;2750	6445;6446	6445		2	9606
NLQEGNEVDSQSSIR	0	1	Unmodified	1674.7809	0.78090569	45	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	2	0		1				14.795	14.795	2	1.1985E-07	4127	DP1061-12	132.59	81.141			NaN	NaN	NaN	0	0	Median	0	0	0	1334	45	1235	2751	6447	6447		1	9606
NLSPYVSNELLEEAFSQFGPIER	0	1	Unmodified	2638.2915	0.29149716	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				25.274	25.274	2	2.2834E-46	15008	DP1061-12	181.51	150.12			NaN	NaN	NaN	0	0	Median	1402500	0	1402500	1335	116	1236	2752	6448;6449;6450;6451	6449		4	9606
NLSSNEAISLEEIR	0	1	Unmodified	1573.7948	0.79476484	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.797	18.797	2	0.00023923	7316	DP1061-11	114.86	67.635			NaN	NaN	NaN	0	0	Median	0	0	0	1336	260	1237	2753	6452	6452		1	9606
NLVPGESVYGEK	1	0	Unmodified	1290.6456	0.6455814	112	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				2		16.303	16.303	2	0.0042504	6341	DP1061-14	113.93	33.708			NaN	NaN	NaN	0	0	Median	0	0	0	1337	112	1238	2754;2755	6453;6454	6454		2	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	0	1	Oxidation (M)	2204.893	0.89299211	114	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4	0				1		15.54	15.54	2	3.8952E-48	5681	DP1061-14	194.05	154.17			NaN	NaN	NaN	0	0	Median	4739200	0	4739200	1338	114	1239	2756	6455;6456;6457	6457	153	3	9606
NMMAACDPR	0	1	Oxidation (M)	1080.4151	0.41506966	253;77;305;297;335	P07437;A6NNZ2;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-3 chain	no	no	0	1	0	3	0			1			12.495	12.495	2	0.0066357	2614	DP1061-13	76.17	49.568			1.535	1.5671	NaN	1	0	Median	53677000	21386000	32291000	1339	77;253;305;335;297	1240	2757	6458;6459;6460;6461	6460	102;103	4	9606
NMQDMVEDYR	0	1	2 Oxidation (M)	1331.5122	0.51220074	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	5	0					1	14.043	14.043	2	0.049038	4281	DP1061-15	88.681	74.382		+	NaN	NaN	NaN	0	0	Median	6902700	6902700	0	1340	60	1241	2758	6462	6462		1	9606
NMSVHLSPCFR	0	1	Oxidation (M)	1362.6173	0.61727494	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	5	0					1	15.166	15.166	3	0.0011436	5287	DP1061-15	75.229	60.412			2.105	1.9771	NaN	1	0	Median	26952000	9215300	17736000	1341	220	1242	2759	6463;6464;6465	6465	238	3	9606
NMVGAGEVDEDLEVETKEECEK	2	0	Oxidation (M)	2525.0785	0.078528774	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	1	1	3.33	0.471			4	2		16.724	16.724	3	1.2072E-05	7121	DP1061-13	110.67	89.818			NaN	NaN	NaN	0	0	Median	0	0	0	1342	390	1243	2760;2761;2762;2763;2764;2765	6466;6467;6468;6469;6470;6471	6467	398	6	9606
NMVQTAVVPVK	1	0	Oxidation (M)	1200.6536	0.65364367	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	1	0	3.33	0.471			2	1		15.082	15.082	2	0.0095771	4937	DP1061-13	121.6	89.669			NaN	NaN	NaN	0	0	Median	172420000	0	172420000	1343	285	1244	2766;2767;2768	6472;6473;6474;6475;6476	6473	273	5	9606
NMVQTAVVPVK	1	0	Unmodified	1184.6587	0.65872905	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	3.67	0.471			1	2		16.076	16.076	2	0.0057927	6280	DP1061-13	95.502	65.335			NaN	NaN	NaN	0	0	Median	40036000	0	40036000	1344	285	1244	2769;2770;2771	6477;6478;6479;6480	6478		4	9606
NMVQTAVVPVKK	2	0	Oxidation (M)	1328.7486	0.74860669	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	1	1	3.8	0.748			2	2	1	12.971	12.971	2;3	1.4861E-11	3084	DP1061-13	117.86	117.86			103.18	104.14	NaN	1	0	Median	311460000	2588800	308870000	1345	285	1245	2772;2773;2774;2775;2776	6481;6482;6483;6484;6485;6486;6487;6488;6489;6490	6481	273	10	9606
NMVQTAVVPVKK	2	0	Unmodified	1312.7537	0.75369207	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	3.33	0.471			2	1		14.283	14.283	2;3	0.00058131	4602	DP1061-13	108.57	78.903			NaN	NaN	NaN	0	0	Median	52129000	0	52129000	1346	285	1245	2777;2778;2779	6491;6492;6493;6494	6493		4	9606
NNASTDYDLSDK	1	0	Unmodified	1341.5685	0.56845329	149	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	3.5	0.5			1	1		14.376	14.376	2	0.00035344	4559	DP1061-14	103.08	83.476			NaN	NaN	NaN	0	0	Median	5292100	0	5292100	1347	149	1246	2780;2781	6495;6496;6497;6498	6497		4	9606
NNTQVLINCR	0	1	Unmodified	1230.6139	0.61390412	223	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	14.723	14.723	2	6.7108E-05	5148	DP1061-15	104.17	64.122			3.3552	3.1514	NaN	1	0	Median	8224500	1899100	6325400	1348	223	1247	2782	6499	6499		1	9606
NNVAIAVTYNHDGSYSMQIEDK	1	0	Oxidation (M)	2484.1227	0.12271727	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		16.783	16.783	2;3	3.4629E-14	7107	DP1061-13	114.9	114.9			0.93672	0.96465	NaN	1	0	Median	46012000	27899000	18113000	1349	395	1248	2783;2784;2785	6500;6501;6502;6503;6504;6505;6506	6502	409	7	9606
NNVNVASLTQSEIR	0	1	Unmodified	1543.7954	0.79543354	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	2					17.625	17.625	2	0.00042781	6173	DP1061-11	112.83	76.925			NaN	NaN	NaN	0	0	Median	0	0	0	1350	347	1249	2786;2787	6507;6508	6508		2	9606
NNYRNAHSATTWSGQYVGGAEAR	0	2	Unmodified	2509.1483	0.14829559	21	CON__Streptavidin			yes	yes	0	0	1	5	0					1	15.026	15.026	3	0.0095101	5211	DP1061-15	58.284	36.72		+	NaN	NaN	NaN	0	0	Median	0	0	0	1351	21	1250	2788	6509	6509		1	
NPATTNQTEFER	0	1	Unmodified	1406.6426	0.64262129	181	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	4	0				1		14.04	14.04	2	0.00029758	4198	DP1061-14	111.06	79.983			NaN	NaN	NaN	0	0	Median	2229700	0	2229700	1352	181	1251	2789	6510;6511	6510		2	9606
NPDDITNEEYGEFYK	1	0	Unmodified	1832.7741	0.77408897	78	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1			18.718	18.718	2	0.018611	9419	DP1061-13	84.169	60.415			NaN	NaN	NaN	0	0	Median	4349500	0	4349500	1353	78	1252	2790	6512	6512		1	9606
NPDLCDFTIDHQSCSR	0	1	Unmodified	1963.8153	0.81525906	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	3.5	0.707			5	2	1	20.454	20.454	2;3	2.8572E-98	8667	DP1061-13	267.67	232.9			NaN	NaN	NaN	0	0	Median	516530000	0	516530000	1354	285	1253	2791;2792;2793;2794;2795;2796;2797;2798	6513;6514;6515;6516;6517;6518;6519;6520;6521;6522;6523;6524;6525;6526;6527;6528	6519		16	9606
NPEHFVVCNR	0	1	Unmodified	1270.5877	0.58768937	334	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	3	0			2			13.838	13.838	2;3	0.0027465	4093	DP1061-13	73.067	73.067			11.026	11.305	NaN	1	0	Median	20388000	1306500	19081000	1355	334	1254	2799;2800	6529;6530;6531;6532	6529		4	9606
NPQNSSQSADGLR	0	1	Unmodified	1372.6331	0.63311924	267	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	yes	0	0	0	4	0				1		12.495	12.495	2	3.6337999999999996E-32	2679	DP1061-14	164.9	121.82			1.7592	1.7974	NaN	1	0	Median	11502000	4952600	6549000	1356	267	1255	2801	6533;6534;6535;6536;6537	6534		5	9606
NPQNSTVLAR	0	1	Unmodified	1098.5782	0.57817054	295	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0.816			1	1	1	13.006	13.006	2	0.015131	3200	DP1061-13	86.136	37.712			NaN	NaN	NaN	0	0	Median	9720400	0	9720400	1357	295	1256	2802;2803;2804	6538;6539;6540;6541;6542	6538		5	9606
NQDATVYVGGLDEK	1	0	Unmodified	1507.7155	0.71545188	325	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	0	3	0			2			16.799	16.799	2	0.0011938	7398	DP1061-13	104.59	56.699			NaN	NaN	NaN	0	0	Median	5324000	0	5324000	1358	325	1257	2805;2806	6543;6544;6545	6545		3	9606
NQDLAPNSAEQASILSLVTK	1	0	Unmodified	2098.0906	0.090612506	284	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		21.355	21.355	2	6.7101E-05	11601	DP1061-14	113.52	77.199			NaN	NaN	NaN	0	0	Median	3826400	0	3826400	1359	284	1258	2807	6546;6547	6547		2	9606
NQGGYGGSSSSSSYGSGR	0	1	Unmodified	1693.6928	0.69281896	82	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4.5	0.5				1	1	12.781	12.781	2	2.1375E-100	2930	DP1061-14	217.12	213.78			19.489	19.913	NaN	1	0	Median	34857000	1655100	33202000	1360	82	1259	2808;2809	6548;6549;6550;6551;6552	6549		5	9606
NQTAEKEEFEHQQK	2	0	Unmodified	1744.8016	0.80164113	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			12.41	12.41	3	0.00065247	2529	DP1061-13	102.87	71.198			NaN	NaN	NaN	0	0	Median	9621000	0	9621000	1361	88	1260	2810	6553	6553		1	9606
NQVALNPQNTVFDAK	1	0	Unmodified	1657.8424	0.84238373	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.75	0.829			2	1	1	17.67	17.67	2	1.7449E-48	8142	DP1061-13	172.13	132.55			4.31	4.4385	NaN	1	0	Median	114660000	19814000	94844000	1362	85	1261	2811;2812;2813;2814	6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564;6565	6556		12	9606
NQVAMNPTNTVFDAK	1	0	Oxidation (M)	1664.7828	0.78281994	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			5			16.138	16.138	2	1.1216E-40	6465	DP1061-13	216.03	167.43			NaN	NaN	NaN	0	0	Median	25143000	0	25143000	1363	88	1262	2815;2816;2817;2818;2819	6566;6567;6568;6569;6570;6571	6567	116	6	9606
NQVAMNPTNTVFDAK	1	0	Unmodified	1648.7879	0.78790532	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			17.465	17.465	2	0.015026	7890	DP1061-13	85.845	53.322			NaN	NaN	NaN	0	0	Median	13904000	0	13904000	1364	88	1262	2820	6572	6572		1	9606
NREPVQLETLSIR	0	2	Unmodified	1553.8526	0.85255449	222	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	1	5	0					2	17.046	17.046	2;3	4.0862E-12	7083	DP1061-15	124.42	124.42			3.152	3.0598	NaN	1	0	Median	16821000	4129200	12692000	1365	222	1263	2821;2822	6573;6574;6575;6576;6577	6574		5	9606
NRPLSDEELDAMFPEGYK	1	1	Oxidation (M)	2125.9626	0.9626348	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	1	2	0		2				17.922	17.922	2;3	5.2585E-06	6709	DP1061-12	125.97	98.302			NaN	NaN	NaN	0	0	Median	35154000	0	35154000	1366	46	1264	2823;2824	6578;6579;6580;6581;6582;6583;6584	6581	53	7	9606
NRPLSDEELDAMFPEGYK	1	1	Unmodified	2109.9677	0.96772018	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				19.684	19.684	3	0.051172	8514	DP1061-12	73.918	54.127			NaN	NaN	NaN	0	0	Median	11147000	0	11147000	1367	46	1264	2825	6585	6585		1	9606
NRPPLPAGTNSK	1	1	Unmodified	1250.6731	0.67313356	156	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	3	0			1			12.423	12.423	2	0.00012611	2510	DP1061-13	140.49	88.23			NaN	NaN	NaN	0	0	Median	6175100	0	6175100	1368	156	1265	2826	6586;6587	6586		2	9606
NRWDETPKTER	1	2	Unmodified	1430.6902	0.69024019	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	2	2	0		1				12.624	12.624	3	0.02407	2517	DP1061-12	67.456	36.889			NaN	NaN	NaN	0	0	Median	7456700	0	7456700	1369	46	1266	2827	6588	6588		1	9606
NSEGWEQNGLYEFFR	0	1	Unmodified	1874.8224	0.82237657	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				22.563	22.563	2	4.5338E-12	11886	DP1061-12	155.47	100.22			NaN	NaN	NaN	0	0	Median	6770400	0	6770400	1370	361	1267	2828	6589;6590	6590		2	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	3 Oxidation (M)	3133.3315	0.33146577	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	3	0	3.67	0.471			1	2		17.27	17.27	3	9.8673E-29	7711	DP1061-13	138.54	138.54			0.71993	0.74139	NaN	1	0	Median	39133000	20926000	18206000	1371	395	1268	2829;2830;2831	6591;6592;6593;6594;6595;6596;6597;6598;6599;6600;6601;6602;6603	6595	410;411;412	13	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	2 Oxidation (M)	3117.3366	0.33655115	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	3	0			1			18.076	18.076	3	9.043E-15	8914	DP1061-13	109.4	109.4			0.79869	0.8225	NaN	1	0	Median	39991000	21394000	18597000	1372	395	1268	2832	6604;6605	6605	410;411;412	2	9606
NSMPASSFQQQK	1	0	Oxidation (M)	1367.614	0.6139637	448	Q9Y383;Q9NQ29	LUC7L2;LUC7L	Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1	yes	no	0	1	0	4	0				1		12.593	12.593	2	2.7626E-05	2815	DP1061-14	99.013	71.966			1.2569	1.2005	NaN	1	0	Median	2592900	1361300	1231500	1373	448	1269	2833	6606;6607;6608;6609;6610	6608	445	5	9606
NSSYFVEWIPNNVK	1	0	Unmodified	1695.8257	0.82567103	253;77;305;297	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		21.089	21.089	2	6.5108E-14	12483	DP1061-13	125.23	106.96			1.4791	1.4669	14.477	2	0	Median	118730000	43397000	75337000	1374	77;253;305;297	1270	2834;2835	6611;6612;6613;6614;6615	6612		5	9606
NSVSNFLHSLER	0	1	Unmodified	1401.7001	0.70007659	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.756	2	3	2			19.648	19.648	2;3	1.142E-41	8625	DP1061-12	145.28	123.25			0.98687	1.031	2.9869	4	0	Median	234050000	118280000	115770000	1375	287	1271	2836;2837;2838;2839;2840;2841;2842	6616;6617;6618;6619;6620;6621;6622;6623;6624;6625;6626;6627;6628;6629;6630;6631;6632;6633;6634;6635;6636;6637;6638	6630		23	9606
NTDEMVELR	0	1	Oxidation (M)	1121.5023	0.50228798	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	3	0			1			14.064	14.064	2	0.051165	4351	DP1061-13	88.948	66.988			NaN	NaN	NaN	0	0	Median	11596000	0	11596000	1376	209	1272	2843	6639	6639		1	9606
NTENNDVEISETK	1	0	Unmodified	1491.6689	0.66889562	343	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	0	1					13.613	13.613	2	0.0049924	2947	DP1061-11	91.855	48.085			NaN	NaN	NaN	0	0	Median	0	0	0	1377	343	1273	2844	6640	6640		1	9606
NTLANSCGTGIR	0	1	Unmodified	1262.6037	0.60373336	386	Q96RE7;Q96BF6	NACC1;NACC2	Nucleus accumbens-associated protein 1;Nucleus accumbens-associated protein 2	yes	no	0	0	0	3	0			1			13.735	13.735	2	0.00018868	4022	DP1061-13	121.61	83.521			NaN	NaN	NaN	0	0	Median	2688000	0	2688000	1378	386	1274	2845	6641;6642;6643	6642		3	9606
NVGFESDTGGAFK	1	0	Unmodified	1327.6044	0.60444487	433	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	3	0			1			16.91	16.91	2	0.02838	7446	DP1061-13	75.652	40.207			NaN	NaN	NaN	0	0	Median	4410600	0	4410600	1379	433	1275	2846	6644	6644		1	9606
NVIDGDLCEQFNSMEPNK	1	0	Oxidation (M)	2124.9092	0.90921902	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	1.5	0.5	1	1				18.565	18.565	2	5.3921E-18	7009	DP1061-11	163.27	133.93			NaN	NaN	NaN	0	0	Median	8338500	0	8338500	1380	321	1276	2847;2848	6645;6646;6647;6648;6649;6650	6645	352	6	9606
NVIDGDLCEQFNSMEPNKQK	2	0	Oxidation (M)	2381.0628	0.062759551	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	1	1	0	1					17.307	17.307	3	0.020485	5846	DP1061-11	68.567	44.557			NaN	NaN	NaN	0	0	Median	1978400	0	1978400	1381	321	1277	2849	6651	6651	352	1	9606
NVIISSAAERPLEIR	0	2	Unmodified	1666.9366	0.93661847	257	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	1	4	0				1		17.315	17.315	3	0.042844	7329	DP1061-14	77.078	39.712			NaN	NaN	NaN	0	0	Median	3356200	0	3356200	1382	257	1278	2850	6652	6652		1	9606
NVIQSVLQAIR	0	1	Unmodified	1239.7299	0.72992016	353	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		2				22.766	22.766	2	0.010205	12219	DP1061-12	95.502	43.02			NaN	NaN	NaN	0	0	Median	0	0	0	1383	353	1279	2851;2852	6653;6654	6654		2	9606
NVMVEPHRHEGVFICR	0	2	Oxidation (M)	1994.9567	0.95671876	112	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	1	1	4	0				1		14.414	14.414	4	0.024339	4790	DP1061-14	43.813	26.734			1.4302	1.3639	NaN	1	0	Median	5628800	2133900	3494900	1384	112	1280	2853	6655	6655	151	1	9606
NVQDAIADAEQR	0	1	Unmodified	1328.6321	0.6320566	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.5	1.5	1			1		16.761	16.761	2	0.00033397	5257	DP1061-11	105.86	82.14		+	NaN	NaN	NaN	0	0	Median	4506700	4506700	0	1385	17	1281	2854;2855	6656;6657;6658	6656		3	9606
NVQLQENEIR	0	1	Unmodified	1241.6364	0.6364137	142	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3.5	0.5			6	6		20.249	20.249	2	1.8376E-05	5238	DP1061-14	157.91	73.167			NaN	NaN	NaN	0	0	Median	603190000	2243800	600950000	1386	142	1282	2856;2857;2858;2859;2860;2861;2862;2863;2864;2865;2866;2867	6659;6660;6661;6662;6663;6664;6665;6666;6667;6668;6669;6670;6671;6672;6673;6674;6675;6676;6677;6678;6679;6680;6681;6682;6683;6684;6685	6673		27	9606
NVQLTENEIR	0	1	Unmodified	1214.6255	0.62551466	210	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4.33	0.471				2	1	15.983	15.983	2	0.00020093	5533	DP1061-14	153.24	91.651			NaN	NaN	NaN	0	0	Median	53878000	0	53878000	1387	210	1283	2868;2869;2870	6686;6687;6688;6689;6690	6687		5	9606
NVSEELDRTPPEVSK	1	1	Unmodified	1698.8424	0.84244331	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	1	1.5	0.5	1	1				15.233	15.233	2	0.00041082	4152	DP1061-11	116.71	75.604			NaN	NaN	NaN	0	0	Median	0	0	0	1388	321	1284	2871;2872	6691;6692	6691		2	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	2 Oxidation (M)	2903.3753	0.37531992	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	2	0	3.11	1.45	2	1	2	2	2	21.494	21.494	2;3	1.9825E-13	11709	DP1061-14	135.69	115.78		+	NaN	NaN	NaN	0	0	Median	69461000	69461000	0	1389	15	1285	2873;2874;2875;2876;2877;2878;2879;2880;2881	6693;6694;6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716	6708	5;6	24	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	Oxidation (M)	2887.3804	0.3804053	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	2	0		1				23.267	23.267	3	0.0025817	12742	DP1061-12	63.029	40.034		+	NaN	NaN	NaN	0	0	Median	4701200	4701200	0	1390	15	1285	2882	6717;6718	6718	5;6	2	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	1	1	Unmodified	3256.3889	0.38893238	250	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	3	0			1			13.416	13.416	3	4.0298999999999995E-67	3624	DP1061-13	177.6	155.2			1.9272	1.9755	NaN	1	0	Median	13268000	4316700	8951500	1391	250	1286	2883	6719;6720;6721;6722;6723;6724;6725;6726	6720		8	9606
NYYEQWGK	1	0	Unmodified	1086.4771	0.47705951	114	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.587	16.587	2	0.042729	6572	DP1061-14	82.671	47.316			NaN	NaN	NaN	0	0	Median	4444700	0	4444700	1392	114	1287	2884	6727	6727		1	9606
PAPAATYER	0	1	Unmodified	974.48214	0.48214489	53	O95059	RPP14	Ribonuclease P protein subunit p14	yes	yes	0	0	0	5	0					1	12.658	12.658	2	0.023434	3017	DP1061-15	89.296	34.746			NaN	NaN	NaN	0	0	Median	1429100	0	1429100	1393	53	1288	2885	6728	6728		1	9606
PAPAVGEAEDKENQQATSGPNQPSVR	1	1	Unmodified	2676.2739	0.27394961	100	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3	0			2			14.161	14.161	3	4.3443E-10	4517	DP1061-13	127.35	104.97			NaN	NaN	NaN	0	0	Median	7029600	0	7029600	1394	100	1289	2886;2887	6729;6730;6731;6732	6729		4	9606
PEFLEDPSVLTK	1	0	Unmodified	1373.7078	0.70784731	156	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			19.378	19.378	2	0.04087	10319	DP1061-13	72.2	27.775			NaN	NaN	NaN	0	0	Median	6872500	0	6872500	1395	156	1290	2888	6733	6733		1	9606
PGASLPPLDLQALEK	1	0	Unmodified	1547.8559	0.85590853	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		20.803	20.803	2	1.7281E-09	10960	DP1061-14	113.22	91.655			0.70423	0.70547	3.5792	2	0	Median	52246000	29188000	23058000	1396	89	1291	2889;2890	6734;6735;6736;6737;6738;6739;6740;6741	6741		8	9606
PGASLPPLDLQALEKELVDR	1	1	Unmodified	2160.179	0.17903358	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				22.874	22.874	3	3.753E-05	12329	DP1061-12	114.03	78.178			NaN	NaN	NaN	0	0	Median	0	0	0	1397	89	1292	2891	6742	6742		1	9606
PGETEEPRPPEQQDQEGGEAAK	1	1	Acetyl (Protein N-term)	2420.0728	0.07279019	391	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	1	0	1	3	0			1			13.439	13.439	3	0.034112	3665	DP1061-13	50.425	35.535			NaN	NaN	NaN	0	0	Median	0	0	0	1398	391	1293	2892	6743	6743		1	9606
PVIVEPLEQLDDEDGLPEK	1	0	Unmodified	2134.0681	0.06814573	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		2				21.063	21.063	2	6.0031E-07	10220	DP1061-12	120.53	72.412			NaN	NaN	NaN	0	0	Median	0	0	0	1399	116	1294	2893;2894	6744;6745	6745		2	9606
PVLQQQQQMLQMR	0	1	Oxidation (M)	1642.8283	0.82833035	461	Q9Y6Q9	NCOA3	Nuclear receptor coactivator 3	yes	yes	0	1	0	3	0			1			21.055	21.055	2	0.03104	12456	DP1061-13	50.123	28.343			1.3559	1.3859	NaN	1	0	Median	8145700	4073100	4072500	1400	461	1295	2895	6746;6747	6746	459;460	2	9606
PVSSAASVYAGAGGSGSR	0	1	Unmodified	1579.759	0.75904803	72	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	3	0			2			14.872	14.872	2	1.6056E-22	5162	DP1061-13	168.61	123.25			NaN	NaN	NaN	0	0	Median	0	0	0	1401	72	1296	2896;2897	6748;6749	6748		2	9606
QAASSLQQASLK	1	0	Unmodified	1230.6568	0.65681479	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			13.992	13.992	2	5.4489E-23	4199	DP1061-13	145.99	145.99			2.1645	2.2291	NaN	1	0	Median	39556000	12922000	26635000	1402	146	1297	2898	6750;6751;6752;6753	6750		4	9606
QADVFPDRDHFGR	0	2	Unmodified	1558.7277	0.72768832	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			15.405	15.405	2;3	2.6767999999999997E-53	5637	DP1061-13	145.99	117.26			0.8331	0.84998	1.1475	2	0	Median	288150000	149770000	138380000	1403	417	1298	2899;2900	6754;6755;6756;6757;6758;6759	6756		6	9606
QAQIEVVPSASALIIK	1	0	Unmodified	1665.9665	0.96652161	133	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	20.024	20.024	2	3.4353E-14	10339	DP1061-15	116.03	102.79			1.3746	1.228	NaN	1	0	Median	8663200	3836700	4826500	1404	133	1299	2901	6760;6761;6762;6763	6763		4	9606
QASQGMVGQLAAR	0	1	Oxidation (M)	1331.6616	0.66158259	439	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	1	0	3	0			1			13.731	13.731	2	0.011447	3968	DP1061-13	89.029	52.472			NaN	NaN	NaN	0	0	Median	4145400	0	4145400	1405	439	1300	2902	6764	6764	444	1	9606
QAVTNPNNTFYATK	1	0	Unmodified	1567.7631	0.76307078	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			3			15.649	15.649	2	2.2592E-09	5758	DP1061-13	147.62	71.403			NaN	NaN	NaN	0	0	Median	18811000	0	18811000	1406	146	1301	2903;2904;2905	6765;6766;6767;6768	6765		4	9606
QCCGTDGVEANYIK	1	0	Unmodified	1613.6814	0.68139134	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				15.691	15.691	2	9.4684E-09	4788	DP1061-12	143	107.09			NaN	NaN	NaN	0	0	Median	0	0	0	1407	46	1302	2906;2907	6769;6770	6769		2	9606
QEDKDDLDVTELTNEDLLDQLVK	2	0	Unmodified	2687.3025	0.30251535	156	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	3.5	0.5			1	1		22.481	22.481	3	0.0061522	14089	DP1061-13	85.932	29.214			NaN	NaN	NaN	0	0	Median	5388500	0	5388500	1408	156	1303	2908;2909	6771;6772;6773	6771		3	9606
QEEMNSQQEEEEMETDAR	0	1	2 Oxidation (M)	2243.843	0.84304953	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	2	0	3	0			2			12.976	12.976	2	8.59E-07	3175	DP1061-13	120.6	113.56			NaN	NaN	NaN	0	0	Median	0	0	0	1409	296	1304	2910;2911	6774;6775	6774	327;328	2	9606
QEGIIFIGPPPSAIR	0	1	Unmodified	1593.8879	0.88787736	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	20.761	20.761	2	3.7225E-76	11944	DP1061-13	208.74	208.74			0.75855	0.7675	4.4104	3	0	Plateau	291480000	167000000	124480000	1410	395	1305	2912;2913;2914	6776;6777;6778;6779;6780;6781;6782;6783	6777		8	9606
QEGLDGGLPEEVLFGNLDLLPPPGK	1	0	Unmodified	2603.3483	0.34828376	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		2				25.122	25.122	2;3	0.00021659	14891	DP1061-12	99.747	78.289			NaN	NaN	NaN	0	0	Median	6101400	0	6101400	1411	364	1306	2915;2916	6784;6785;6786;6787;6788	6785		5	9606
QELSHALYQHDAACR	0	1	Unmodified	1797.8217	0.82166506	436	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	3	0			2			13.871	13.871	3;4	2.6191E-06	4179	DP1061-13	89.507	69.118			14.642	14.983	NaN	1	0	Median	56980000	2032500	54948000	1412	436	1307	2917;2918	6789;6790;6791;6792;6793;6794	6790		6	9606
QEYDESGPSIVHR	0	1	Unmodified	1515.6954	0.69538514	199;249	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		14.439	14.439	3	9.8352E-06	4659	DP1061-14	98.337	98.337			1.336	1.3651	NaN	1	0	Median	11334000	5531000	5802900	1413	199;249	1308	2919	6795;6796;6797;6798	6796		4	9606
QFSSADEAALKEPIIK	2	0	Unmodified	1745.92	0.91996535	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		17.061	17.061	2;3	2.9967999999999997E-50	7403	DP1061-13	182.37	182.37			0.83312	0.84086	3.6979	3	0	Plateau	245450000	131190000	114260000	1414	417	1309	2920;2921;2922	6799;6800;6801;6802;6803;6804;6805;6806;6807;6808	6807		10	9606
QGDEVSVHYDPMIAK	1	0	Oxidation (M)	1703.7825	0.78248559	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			15.623	15.623	2	8.245099999999999E-21	5871	DP1061-13	134.3	134.3			0.87628	0.9024	NaN	1	0	Median	17019000	8878700	8140100	1415	395	1310	2923	6809;6810;6811;6812;6813	6812	413	5	9606
QGDEVSVHYDPMIAK	1	0	Unmodified	1687.7876	0.78757097	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			16.485	16.485	3	0.0079331	6836	DP1061-13	58.079	58.079			0.95088	0.97923	NaN	1	0	Median	42127000	19904000	22224000	1416	395	1310	2924	6814;6815	6815		2	9606
QGGGGGGGSVPGIER	0	1	Unmodified	1283.6218	0.62182627	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			14.041	14.041	2	1.1925E-13	4250	DP1061-13	116.71	100.04			0.92871	0.94924	NaN	1	0	Median	38262000	18112000	20150000	1417	188	1311	2925	6816;6817;6818;6819;6820;6821	6819		6	9606
QGPLHGMLINTPYVTK	1	0	Oxidation (M)	1783.9291	0.92909025	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				16.995	16.995	2;3	0.0002308	5449	DP1061-11	81.709	81.709			0.81826	0.87108	2.9426	3	0	Median	178080000	96412000	81672000	1418	287	1312	2926;2927;2928	6822;6823;6824;6825;6826;6827;6828	6825	305	7	9606
QGPLHGMLINTPYVTK	1	0	Unmodified	1767.9342	0.93417563	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.369	18.369	3	0.00020357	6796	DP1061-11	78.249	78.249			0.79732	0.8488	NaN	1	0	Median	17263000	9618000	7644500	1419	287	1312	2929	6829;6830;6831;6832	6830		4	9606
QGTIFLAGPPLVK	1	0	Unmodified	1339.7864	0.7863724	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.2	0.4			4	1		22.628	22.628	2	0.0012731	10958	DP1061-13	83.883	83.883			0.82398	0.8037	4.18	3	0	Median	168040000	91235000	76809000	1420	417	1313	2930;2931;2932;2933;2934	6833;6834;6835;6836;6837;6838;6839;6840;6841;6842;6843;6844	6834		12	9606
QGVDADINGLR	0	1	Unmodified	1156.5836	0.58364985	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3.33	1.7	1			1	1	16.328	16.328	2	1.8014E-05	5060	DP1061-11	154.01	78.799		+	NaN	NaN	NaN	0	0	Median	10639000	10639000	0	1421	16	1314	2935;2936;2937	6845;6846;6847;6848	6846		4	9606
QHLSNMEVQVASQSSQR	0	1	Oxidation (M)	1943.9119	0.91193663	95	P12270	TPR	Nucleoprotein TPR	yes	yes	0	1	0	1	0	1					13.551	13.551	3	0.028584	2888	DP1061-11	62.055	36.189			NaN	NaN	NaN	0	0	Median	692280	0	692280	1422	95	1315	2938	6849	6849	140	1	9606
QIDQFLVVAR	0	1	Unmodified	1187.6663	0.66625727	51	O94776;Q9BTC8;Q13330	MTA2;MTA3;MTA1	Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1	yes	no	0	0	0	3	0			1			19.283	19.283	2	0.011206	10168	DP1061-13	111.74	55.018			NaN	NaN	NaN	0	0	Median	5248300	0	5248300	1423	51	1316	2939	6850;6851	6851		2	9606
QILIASHLPSYELR	0	1	Unmodified	1638.9093	0.90934108	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.855	18.855	3	0.00040994	7336	DP1061-11	77.192	61.373			0.69836	0.76378	NaN	1	0	Median	4450900	2933600	1517200	1424	26	1317	2940	6852	6852		1	9606
QILMASGSTTFTK	1	0	Oxidation (M)	1399.7017	0.70171607	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	1	0	1					16.227	16.227	2	0.0015416	4787	DP1061-11	99.752	63.327			NaN	NaN	NaN	0	0	Median	1644600	0	1644600	1425	347	1318	2941	6853;6854	6853	368	2	9606
QINVSTDDSEVK	1	0	Unmodified	1333.6361	0.63613893	34	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			14.269	14.269	2	0.0082974	4645	DP1061-13	86.344	56.794			NaN	NaN	NaN	0	0	Median	6867700	0	6867700	1426	34	1319	2942	6855;6856	6856		2	9606
QINWTVLYR	0	1	Unmodified	1191.64	0.64004252	261	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	20.294	20.294	2	2.3105E-06	10605	DP1061-15	117.4	90.797			1.7443	1.6383	NaN	1	0	Median	17957000	7458400	10499000	1427	261	1320	2943	6857;6858;6859	6857		3	9606
QISNLQQSISDAEQR	0	1	Unmodified	1715.8438	0.84384029	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3.17	1.34	1	1	1	2	1	17.454	17.454	2	8.965399999999999E-66	7414	DP1061-15	237.67	237.67		+	NaN	NaN	NaN	0	0	Median	73902000	73902000	0	1428	60	1321	2944;2945;2946;2947;2948;2949	6860;6861;6862;6863;6864;6865;6866;6867;6868;6869;6870;6871;6872;6873;6874;6875;6876;6877;6878	6877		19	9606
QITSYGETCPGLEQYAIK	1	0	Unmodified	2056.9776	0.97755658	183	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			18.979	18.979	2	0.038556	9757	DP1061-13	71.976	31.501			NaN	NaN	NaN	0	0	Median	0	0	0	1429	183	1322	2950	6879	6879		1	9606
QITVNDLPVGR	0	1	Unmodified	1210.667	0.66698555	275	Q06830;P32119	PRDX1;PRDX2	Peroxiredoxin-1;Peroxiredoxin-2	yes	no	0	0	0	5	0					1	17.428	17.428	2	2.2934E-05	7526	DP1061-15	105.4	77.625			1.2754	1.1979	NaN	1	0	Median	9056000	3982000	5074100	1430	275	1323	2951	6880;6881;6882	6880		3	9606
QKADEAYLIGR	1	1	Unmodified	1262.6619	0.66190017	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	3	0.816		1	1	1		15.18	15.18	2;3	0.0029476	5376	DP1061-13	69.979	31.229			0.95033	0.98434	9.9722	2	0	Median	78577000	38616000	39960000	1431	89	1324	2952;2953;2954	6883;6884;6885;6886;6887;6888	6886		6	9606
QLASGLLLVTGPLVLNR	0	1	Unmodified	1763.0669	0.066904359	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		23.112	23.112	2	3.4471000000000004E-55	13086	DP1061-14	170.07	170.07			1.6086	1.6436	NaN	1	0	Median	5193300	1978100	3215100	1432	272	1325	2955	6889;6890;6891;6892	6889		4	9606
QLCDNAGFDATNILNK	1	0	Unmodified	1792.8414	0.84139745	398	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			19.168	19.168	2	0.047108	9990	DP1061-13	71.176	13.004			NaN	NaN	NaN	0	0	Median	0	0	0	1433	398	1326	2956	6893	6893		1	9606
QLDDLKVELSQLR	1	1	Unmodified	1555.857	0.85697116	159	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	1	5	0					1	19.164	19.164	3	0.0032127	9386	DP1061-15	62.891	34.924			0.78306	0.75209	NaN	1	0	Median	8587400	3774900	4812500	1434	159	1327	2957	6894;6895	6895		2	9606
QLFHPEQLITGK	1	0	Unmodified	1409.7667	0.76669959	252;400	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			2			18.02	18.02	2;3	1.4502E-05	8738	DP1061-13	145.25	0			1.3773	1.4184	NaN	1	0	Median	42021000	13972000	28050000	1435	252;400	1328	2958;2959	6896;6897;6898;6899	6899		4	9606
QLFHPEQLITGKEDAANNYAR	1	1	Unmodified	2414.1979	0.19787154	252;400	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	3	0			3			17.754	17.754	3;4	2.7784E-49	8260	DP1061-13	167.9	167.9			1.3783	1.4128	2.6896	2	0	Median	100320000	42427000	57897000	1436	252;400	1329	2960;2961;2962	6900;6901;6902;6903;6904;6905;6906;6907;6908;6909;6910;6911;6912	6909		13	9606
QLTEEDGVHSVIEENIK	1	0	Unmodified	1938.9535	0.95345032	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.89	1.45	2	2	2	1	2	17.383	17.383	2;3	3.6733E-84	6466	DP1061-12	206.74	175.67			0.92388	1.0633	6.8879	7	0	Linear	325310000	161320000	163990000	1437	287	1330	2963;2964;2965;2966;2967;2968;2969;2970;2971	6913;6914;6915;6916;6917;6918;6919;6920;6921;6922;6923;6924;6925;6926;6927;6928;6929;6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943	6929		31	9606
QLVDTTVELANK	1	0	Unmodified	1329.714	0.71399532	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				17.122	17.122	2	0.00028847	5914	DP1061-12	112.36	67.377			NaN	NaN	NaN	0	0	Median	40788000	0	40788000	1438	46	1331	2972	6944;6945	6944		2	9606
QMEQISQFLQAAER	0	1	Oxidation (M)	1693.8094	0.80936904	144	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	19.701	19.701	2	1.7646E-11	9938	DP1061-15	156.01	63.774			NaN	NaN	NaN	0	0	Median	10367000	0	10367000	1439	144	1332	2973	6946;6947	6947	179	2	9606
QMEQISQFLQAAER	0	1	Unmodified	1677.8145	0.81445442	144	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	21.086	21.086	2	1.4087E-09	11440	DP1061-15	150.09	68.065			NaN	NaN	NaN	0	0	Median	2365800	0	2365800	1440	144	1332	2974	6948;6949	6948		2	9606
QPSLHMSAAAASR	0	1	Oxidation (M)	1341.6459	0.64593253	51	O94776;Q9BTC8;Q13330	MTA2;MTA3;MTA1	Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1	yes	no	0	1	0	3	0			1			12.405	12.405	3	0.047148	2470	DP1061-13	49.298	17.29			NaN	NaN	NaN	0	0	Median	12751000	0	12751000	1441	51	1333	2975	6950	6950		1	9606
QPTIFQNK	1	0	Unmodified	974.51853	0.5185304	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	14.744	14.744	2	0.011574	4907	DP1061-15	90.777	47.653			1.6289	1.4551	NaN	1	0	Median	15123000	5924500	9198800	1442	220	1334	2976	6951	6951		1	9606
QPYAVSELAGHQTSAESWGTGR	0	1	Unmodified	2331.088	0.087986745	141	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			17.588	17.588	3	0.0062583	8034	DP1061-13	81.884	60.531			NaN	NaN	NaN	0	0	Median	16826000	0	16826000	1443	141	1335	2977	6952	6952		1	9606
QQEIVVSR	0	1	Unmodified	957.52434	0.52434406	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.5	0.5	1	1				13.705	13.705	2	0.017172	2924	DP1061-11	113.71	38.517			NaN	NaN	NaN	0	0	Median	22184000	0	22184000	1444	321	1336	2978;2979	6953;6954;6955	6953		3	9606
QQEQADSLER	0	1	Unmodified	1202.5527	0.55274365	313	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.661	12.661	2	0.013189	2190	DP1061-11	107.21	64.122			NaN	NaN	NaN	0	0	Median	1081400	0	1081400	1445	313	1337	2980	6956;6957	6956		2	9606
QQIQSIQQSIER	0	1	Unmodified	1456.7634	0.76340513	197	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	5	0					2	16.044	16.044	2	0.0070811	6115	DP1061-15	102.95	62.897			NaN	NaN	NaN	0	0	Median	0	0	0	1446	197	1338	2981;2982	6958;6959	6958		2	9606
QSLEASLAETEGR	0	1	Unmodified	1389.6736	0.67358707	15	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	4	0.816			1	1	1	17.135	17.135	2	1.8846E-18	7156	DP1061-15	185.99	128.13		+	NaN	NaN	NaN	0	0	Median	41788000	41788000	0	1447	15	1339	2983;2984;2985	6960;6961;6962;6963;6964;6965	6965		6	9606
QSNVAAPGDATPPAEK	1	0	Unmodified	1551.7529	0.75290002	394	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				13.657	13.657	2	0.0046155	3238	DP1061-12	94.402	48.494			NaN	NaN	NaN	0	0	Median	0	0	0	1448	394	1340	2986	6966	6966		1	9606
QSPNSYVVIMNGSCVEVDVHR	0	1	Oxidation (M)	2405.1104	0.11037845	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1				17.615	17.615	3	1.3965E-05	6414	DP1061-12	82.8	59.074			0.79291	0.85949	NaN	1	0	Median	16425000	7185700	9239000	1449	287	1341	2987	6967;6968;6969;6970;6971;6972	6967	306	6	9606
QSVEADINGLRR	0	2	Unmodified	1356.711	0.71097563	15	CON__P13645;P13645;CON__P02535-1;CON__P08730-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	1	3.25	1.48	1		1	1	1	15.718	15.718	3	0.0027911	5673	DP1061-15	87.184	56.387		+	NaN	NaN	NaN	0	0	Median	58189000	58189000	0	1450	15	1342	2988;2989;2990;2991	6973;6974;6975;6976;6977	6977		5	9606
QTFEAAILTQLHPR	0	1	Unmodified	1623.8733	0.87328993	419	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	4	0				1		19.92	19.92	3	0.034804	10084	DP1061-14	69.258	34.359			NaN	NaN	NaN	0	0	Median	2149300	0	2149300	1451	419	1343	2992	6978	6978		1	9606
QTQTFTTYSDNQPGVLIQVYEGER	0	1	Unmodified	2773.3195	0.31950282	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			21.065	21.065	2	6.417699999999999E-19	12407	DP1061-13	151.8	116.98			NaN	NaN	NaN	0	0	Median	5326100	0	5326100	1452	88	1344	2993	6979;6980;6981;6982	6979		4	9606
QTTQDAPEEVR	0	1	Unmodified	1272.5946	0.59460847	428	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	0	0	0	4	0				2		12.592	12.592	2	0.010672	2800	DP1061-14	88.681	46.805			NaN	NaN	NaN	0	0	Median	0	0	0	1453	428	1345	2994;2995	6983;6984	6984		2	9606
QTTTGSAVPIR	0	1	Unmodified	1129.6091	0.60913632	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.787	13.787	2	0.0034743	3016	DP1061-11	82.749	82.749			0.96149	1.0489	NaN	1	0	Median	4898600	2396400	2502300	1454	26	1346	2996	6985;6986	6985		2	9606
QTYSTEPNNLK	1	0	Unmodified	1293.6201	0.62009493	165	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	5	0					1	13.595	13.595	2	0.0020945	3878	DP1061-15	86.67	71.997			1.613	1.4409	NaN	1	0	Median	6432600	2030200	4402400	1455	165	1347	2997	6987;6988;6989;6990	6987		4	9606
QVEELFER	0	1	Unmodified	1048.5189	0.51892433	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.262	17.262	2	0.05221	6084	DP1061-12	75.738	31.969			NaN	NaN	NaN	0	0	Median	5191600	0	5191600	1456	258	1348	2998	6991	6991		1	9606
QVFFELNGQLR	0	1	Unmodified	1349.7092	0.70918471	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				20.203	20.203	2	3.5728E-28	9155	DP1061-12	168.25	146.8			0.91065	0.98712	NaN	1	0	Median	70477000	34125000	36352000	1457	89	1349	2999	6992;6993;6994;6995;6996;6997;6998	6993		7	9606
QVGYENAGTVEFLVDR	0	1	Unmodified	1795.8741	0.87407779	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.17	0.5		16	1	1		24.536	24.536	2	5.0551E-149	10334	DP1061-12	249.69	249.69			0.91742	0.99445	12.111	7	0	Median	331490000	166070000	165410000	1458	89	1350	3000;3001;3002;3003;3004;3005;3006;3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017	6999;7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014;7015;7016;7017;7018;7019;7020;7021;7022;7023;7024;7025;7026;7027;7028;7029;7030;7031;7032;7033;7034;7035;7036;7037;7038;7039	7005		41	9606
QVHPDTGISSK	1	0	Unmodified	1167.5884	0.58840088	75;44	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					1	12.399	12.399	2	2.7968E-155	2701	DP1061-15	265.67	183.43			1.334	1.1917	NaN	1	0	Median	48743000	21257000	27486000	1459	44;75	1351	3018	7040;7041;7042;7043	7043		4	9606
QVIGTGSFFPK	1	0	Unmodified	1179.6288	0.62880913	302	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		18.725	18.725	2	0.0067824	8751	DP1061-14	92.838	45.181			NaN	NaN	NaN	0	0	Median	2222500	0	2222500	1460	302	1352	3019	7044	7044		1	9606
QVLDNLTMEK	1	0	Oxidation (M)	1205.5962	0.59618837	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	1	0	1					16.029	16.029	2	0.028029	4618	DP1061-11	87.806	57.12		+	NaN	NaN	NaN	0	0	Median	5917800	5917800	0	1461	16	1353	3020	7045	7045	8	1	9606
QVLIASHLPSYELR	0	1	Unmodified	1624.8937	0.89369102	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.8	0.98	5	3	1	1		19.834	19.834	2;3	3.1465999999999998E-21	11290	DP1061-11	139.48	116.9			0.857	0.89471	8.8841	6	0	Median	470510000	252330000	218170000	1462	287	1354	3021;3022;3023;3024;3025;3026;3027;3028;3029;3030	7046;7047;7048;7049;7050;7051;7052;7053;7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064;7065;7066;7067;7068;7069	7053		24	9606
QVNYEVDR	0	1	Unmodified	1021.4829	0.48287317	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.928	13.928	2	0.011935	3069	DP1061-11	90.37	64.476			0.88019	0.90097	NaN	1	0	Median	53588000	27670000	25917000	1463	287	1355	3031	7070;7071	7070		2	9606
QVNYEVDRR	0	2	Unmodified	1177.584	0.5839842	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					12.895	12.895	2;3	1.9293E-10	2281	DP1061-11	136.11	136.11			0.93512	0.95472	5.0734	2	0	Median	24403000	12392000	12012000	1464	287	1356	3032;3033	7072;7073;7074;7075;7076;7077	7073		6	9606
QVNYNDGSQEDR	0	1	Unmodified	1423.5964	0.59639938	311	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	0	2					12.691	12.691	2	0.0010685	2201	DP1061-11	126.07	99.096			NaN	NaN	NaN	0	0	Median	0	0	0	1465	311	1357	3034;3035	7078;7079	7078		2	9606
QVQAEVPGSPIFVMR	0	1	Oxidation (M)	1672.8607	0.86067633	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.67	1.05	6	1	1	1		20.181	20.181	2;3	7.366400000000001E-29	7459	DP1061-12	148.28	148.28			0.80909	0.82615	16.2	9	0	Median	421390000	233150000	188240000	1466	287	1358	3036;3037;3038;3039;3040;3041;3042;3043;3044	7080;7081;7082;7083;7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104	7097	307	25	9606
QVQAEVPGSPIFVMR	0	1	Unmodified	1656.8658	0.86576171	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	2	2	2			20.302	20.302	2;3	8.3087E-91	8582	DP1061-11	214.82	214.82			0.79702	0.8412	18.832	4	0	Median	194420000	107790000	86633000	1467	287	1358	3045;3046;3047;3048;3049;3050	7105;7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122;7123;7124	7107		20	9606
QVSDLISVLR	0	1	Unmodified	1128.6503	0.65027285	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.107	20.107	2	0.011798	11059	DP1061-13	94.692	42.837			NaN	NaN	NaN	0	0	Median	12424000	0	12424000	1468	102	1359	3051	7125;7126	7125		2	9606
QVVNIPSFIVR	0	1	Unmodified	1270.7398	0.73975656	166	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	20.398	20.398	2	4.5538E-13	10675	DP1061-15	134.77	119.15			1.6007	1.5034	NaN	1	0	Median	8817400	3486900	5330500	1469	166	1360	3052	7127;7128	7127		2	9606
QWYESHYALPLGR	0	1	Unmodified	1618.7892	0.78922595	212	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					3	18.511	18.511	2;3	0.0022843	8703	DP1061-15	66.023	46.283			1.9895	1.8687	NaN	1	0	Median	9441900	3474200	5967700	1470	212	1361	3053;3054;3055	7129;7130;7131;7132	7130		4	9606
RAGELTEDEVER	0	2	Unmodified	1402.6688	0.66883604	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					1	13.416	13.416	3	3.8805E-08	3689	DP1061-15	111.79	87.942			1.1519	1.1182	NaN	1	0	Median	8143900	3373700	4770100	1471	217	1362	3056	7133;7134;7135;7136	7133		4	9606
RAMGEQAVALAR	0	2	Oxidation (M)	1287.6718	0.67175335	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3.5	0.5			1	1		12.943	12.943	3	1.2259E-07	3121	DP1061-13	104.87	75.795			0.98093	0.96757	12.997	2	0	Median	115860000	56271000	59587000	1472	67	1363	3057;3058	7137;7138;7139;7140;7141;7142;7143	7140	70	7	9606
RAMGEQAVALAR	0	2	Unmodified	1271.6768	0.67683873	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			14.228	14.228	3	0.0085302	4676	DP1061-13	54.871	40.24			0.81567	0.8322	NaN	1	0	Median	16563000	7142700	9420200	1473	67	1363	3059	7144;7145	7145		2	9606
RAPDQAAEIGSR	0	2	Unmodified	1269.6426	0.64256171	336	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	1	4	0				1		12.489	12.489	3	0.043159	2664	DP1061-14	61.167	30.599			NaN	NaN	NaN	0	0	Median	0	0	0	1474	336	1364	3060	7146	7146		1	9606
RAYIAYELNSVQHR	0	2	Unmodified	1718.8853	0.8852516	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	2	2				16.394	16.394	3	1.6851E-61	4721	DP1061-11	188.63	147.05			0.95043	0.97142	1.503	2	0	Median	146040000	75720000	70317000	1475	287	1365	3061;3062;3063;3064	7147;7148;7149;7150;7151;7152;7153;7154;7155;7156;7157	7149		11	9606
REEEEFNTGPLSVLTQSVK	1	1	Unmodified	2162.0855	0.085527128	223	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	1	5	0					1	19.969	19.969	3	0.0081238	10265	DP1061-15	84.66	53.24			NaN	NaN	NaN	0	0	Median	2808100	0	2808100	1476	223	1366	3065	7158;7159	7158		2	9606
RFDDAVVQSDMK	1	1	Oxidation (M)	1425.6558	0.65582851	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			13.971	13.971	2	0.00087671	4342	DP1061-13	96.113	65.501			NaN	NaN	NaN	0	0	Median	10058000	0	10058000	1477	88	1367	3066	7160;7161	7160	117	2	9606
RFEDFTR	0	2	Unmodified	969.46683	0.46682918	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.823	14.823	2	0.041654	3912	DP1061-11	79.713	79.713			0.99762	1.0185	NaN	1	0	Median	4913700	2239500	2674200	1478	26	1368	3067	7162	7162		1	9606
RFQAQSLGTTYIYDIPEMFR	0	2	Oxidation (M)	2451.1893	0.18928069	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0		2				21.006	21.006	3	1.2344E-08	10143	DP1061-12	95.307	78.161			0.66966	0.6852	NaN	1	0	Median	21015000	11579000	9436500	1479	287	1369	3068;3069	7163;7164;7165;7166;7167;7168;7169;7170	7166	282	8	9606
RIGYPVMIK	1	1	Oxidation (M)	1091.6161	0.61613595	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0			1			15.207	15.207	2	0.012648	5382	DP1061-13	69.198	48.573			0.89332	0.9157	NaN	1	0	Median	86056000	45784000	40272000	1480	395	1370	3070	7171;7172	7172	414	2	9606
RIGYPVMIK	1	1	Unmodified	1075.6212	0.62122133	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			16.11	16.11	2	0.0067657	6295	DP1061-13	91.626	91.626			1.1257	1.1539	NaN	1	0	Median	37192000	18759000	18433000	1481	395	1370	3071	7173;7174	7173		2	9606
RILNVPQELYEK	1	1	Unmodified	1500.83	0.83002813	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					17.61	17.61	2;3	0.0024426	6081	DP1061-11	82.261	13.368			0.88801	0.9403	13.616	2	0	Median	15144000	7582000	7562300	1482	287	1371	3072;3073	7175;7176;7177;7178	7175		4	9606
RILSKPIEVQVGGR	1	2	Unmodified	1550.9257	0.92565985	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	2	2	0		1				15.388	15.388	3	0.0065386	4537	DP1061-12	81.619	55.972			NaN	NaN	NaN	0	0	Median	19246000	0	19246000	1483	352	1372	3074	7179;7180	7180		2	9606
RIPVQAVWAGWGHASENPK	1	1	Unmodified	2102.081	0.080991294	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	2	0		1				18.2	18.2	3	1.4007E-25	7246	DP1061-12	138.97	138.97			0.79382	0.83085	NaN	1	0	Median	31354000	16430000	14924000	1484	287;26	1373	3075	7181;7182;7183	7183		3	9606
RISTLTIEEGNLDIQRPK	1	2	Unmodified	2082.1433	0.14331678	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	2	3.5	0.5			1	1		17.031	17.031	3	4.0861E-15	7384	DP1061-13	142.58	104.93			NaN	NaN	NaN	0	0	Median	19360000	0	19360000	1485	285	1374	3076;3077	7184;7185;7186	7185		3	9606
RLDECEEAFQGTK	1	1	Unmodified	1581.7093	0.70932065	204	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	1	4	0				1		14.637	14.637	2	0.00030499	4853	DP1061-14	110.31	82.825			NaN	NaN	NaN	0	0	Median	1880100	0	1880100	1486	204	1375	3078	7187;7188;7189	7188		3	9606
RLLLEDLVK	1	1	Unmodified	1097.6808	0.6808447	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	3	1.58	1	1		1	1	19.008	19.008	2	6.6594E-05	8009	DP1061-12	114.5	87.896			0.99521	1.0656	9.1193	4	0	Linear	73583000	36773000	36810000	1487	287	1376	3079;3080;3081;3082	7190;7191;7192;7193;7194;7195;7196;7197;7198	7194		9	9606
RLNISYTR	0	2	Unmodified	1021.5669	0.56687757	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			14.067	14.067	2	8.593E-05	4442	DP1061-13	114.89	75.873			0.93427	0.95319	NaN	1	0	Median	581540000	298030000	283510000	1488	395	1377	3083	7199;7200;7201;7202	7202		4	9606
RLPDAHSDYAR	0	2	Unmodified	1299.632	0.63199703	392	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	3	0			1			12.544	12.544	3	0.021758	2675	DP1061-13	72.289	49.569			NaN	NaN	NaN	0	0	Median	0	0	0	1489	392	1378	3084	7203	7203		1	9606
RLQTQVFK	1	1	Unmodified	1018.5924	0.59236404	166	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	13.498	13.498	2	0.023832	3788	DP1061-15	61.962	17.515			1.1548	1.1092	NaN	1	0	Median	8582400	4191700	4390800	1490	166	1379	3085	7204	7204		0	9606
RLTFLVAQK	1	1	Unmodified	1074.655	0.6549643	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				16.534	16.534	2	0.0011062	5124	DP1061-11	101.64	27.516			0.92541	0.97423	1.4826	2	0	Median	149400000	77123000	72279000	1491	287	1380	3086;3087	7205;7206;7207;7208	7206		4	9606
RMLMEDFSLSPEIILSCR	0	2	Oxidation (M)	2212.069	0.069030903	380	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	1	1	2.5	0.5		1	1			21.849	21.849	2	0.040811	11092	DP1061-12	62.694	15.088			NaN	NaN	NaN	0	0	Median	43829000	0	43829000	1492	380	1381	3088;3089	7209;7210	7209	395;396	2	9606
RMSLRDDTSFVFTLTDK	1	2	Oxidation (M)	2047.0044	0.004440036	374	Q8WXG6	MADD	MAP kinase-activating death domain protein	yes	yes	0	1	2	5	0					1	23.18	23.18	2	0.042219	13751	DP1061-15	74.698	30.9			NaN	NaN	NaN	0	0	Median	264600000	0	264600000	1493	374	1382	3090	7211	7211	391	1	9606
RPAEDMEEEQAFKR	1	2	Oxidation (M)	1750.7944	0.79444726	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3	0			1			12.898	12.898	3	0.0012506	2984	DP1061-13	95.195	73.314			NaN	NaN	NaN	0	0	Median	18989000	0	18989000	1494	209	1383	3091	7212	7212	232	1	9606
RPAEDMEEEQAFKR	1	2	Unmodified	1734.7995	0.79953264	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	2	3	0			1			13.837	13.837	3	0.0019691	4131	DP1061-13	90.498	62.854			NaN	NaN	NaN	0	0	Median	9597400	0	9597400	1495	209	1383	3092	7213	7213		1	9606
RPELLTHSTTEVTQPR	0	2	Unmodified	1863.9803	0.9802742	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				14.659	14.659	3	1.2886E-21	3930	DP1061-12	130.47	130.47			1.3706	1.4024	NaN	1	0	Median	14489000	5092300	9396500	1496	258	1384	3093	7214;7215;7216;7217	7216		4	9606
RPGAALDPGCVLAK	1	1	Unmodified	1423.7606	0.76056836	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	1.07	3	2	1	1		16	16	2;3	9.1387E-14	4625	DP1061-11	119.03	94.19			0.7543	0.78948	14.525	6	0	Median	415050000	228190000	186860000	1497	287	1385	3094;3095;3096;3097;3098;3099;3100	7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229;7230;7231;7232;7233;7234;7235;7236;7237;7238;7239;7240	7229		23	9606
RPIVGLGGGK	1	1	Unmodified	952.5818	0.58179936	303	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	1	4	0				1		13.196	13.196	2	1.4658E-05	3372	DP1061-14	113.26	46.224			0.86162	0.86909	NaN	1	0	Median	28052000	15424000	12628000	1498	303	1386	3101	7241;7242;7243;7244	7243		4	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Oxidation (M)	3238.5174	0.51738456	250	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	3.5	0.5			1	1		14.515	14.515	4	1.1442E-15	4807	DP1061-13	112.26	98.854			1.4529	1.3505	NaN	1	0	Median	22572000	6649100	15923000	1499	250	1387	3102;3103	7245;7246;7247;7248;7249;7250;7251	7247	254	7	9606
RPSTFGIPR	0	2	Unmodified	1029.572	0.57196295	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				14.92	14.92	2	0.052794	4205	DP1061-12	64.841	0.57607			1.264	1.2933	NaN	1	0	Median	14985000	7484800	7500300	1500	258	1388	3104	7252	7252		1	9606
RQQEQQVPILEK	1	1	Unmodified	1494.8154	0.8154407	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	0	1					14.794	14.794	3	0.031436	3866	DP1061-11	41.644	41.644			2.6623	2.819	NaN	1	0	Median	1690700	453460	1237300	1501	171	1389	3105	7253	7253		1	9606
RVDPVYIHLAER	0	2	Unmodified	1466.7994	0.7993967	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.3	1.35	4	2	2	1	1	17.367	17.367	2;3	3.1723E-12	6233	DP1061-13	126.32	103.2			0.85493	0.86915	10.09	10	0	Median	557560000	294680000	262880000	1502	287	1390	3106;3107;3108;3109;3110;3111;3112;3113;3114;3115	7254;7255;7256;7257;7258;7259;7260;7261;7262;7263;7264;7265;7266;7267;7268;7269;7270;7271;7272;7273;7274;7275;7276;7277;7278;7279;7280;7281;7282;7283;7284;7285;7286;7287;7288	7274		35	9606
RVEGPGSLGLEESGSR	0	2	Unmodified	1628.8118	0.81181188	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	2	1	1		1			15.253	15.253	2;3	1.8976E-05	6313	DP1061-13	119.77	61.404			NaN	NaN	NaN	0	0	Median	47874000	0	47874000	1503	285	1391	3116;3117	7289;7290	7290		2	9606
RVEGPGSLGLEESGSRR	0	3	Unmodified	1784.9129	0.91292291	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	2	4	0				1		14.154	14.154	3	0.00065844	4588	DP1061-14	104.26	59.817			NaN	NaN	NaN	0	0	Median	16217000	0	16217000	1504	285	1392	3118	7291;7292	7291		2	9606
RVSALNSVHCEHVEDEGESR	0	2	Unmodified	2309.0455	0.045470003	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.75	0.829	2	1	1			13.707	13.707	4	0.00053801	3078	DP1061-12	62.362	62.362			0.92516	0.94456	20.719	3	0	Plateau	43325000	24399000	18927000	1505	287	1393	3119;3120;3121;3122	7293;7294;7295;7296;7297;7298;7299;7300;7301	7298		9	9606
RWDQTADQTPGATPK	1	1	Unmodified	1670.8012	0.8012472	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		2				14.245	14.245	2;3	3.1123E-09	3581	DP1061-12	145	98.997			NaN	NaN	NaN	0	0	Median	15425000	0	15425000	1506	46	1394	3123;3124	7302;7303;7304;7305;7306	7302		5	9606
SADGSAPAGEGEGVTLQR	0	1	Unmodified	1700.7966	0.79655575	269	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	4	0				1		15.027	15.027	2	0.0058146	5303	DP1061-14	97.273	59.765			NaN	NaN	NaN	0	0	Median	1749900	0	1749900	1507	269	1395	3125	7307	7307		1	9606
SAEEEAADLPTKPTK	2	0	Unmodified	1585.7835	0.78353145	372	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					3	13.829	13.829	2;3	6.0414E-30	4112	DP1061-15	196.67	145.23			NaN	NaN	NaN	0	0	Median	7793300	0	7793300	1508	372	1396	3126;3127;3128	7308;7309;7310;7311	7309		4	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1283.6445	0.64447597	165	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	1	0	5	0					1	18.255	18.255	2	1.1561E-13	8411	DP1061-15	137.05	137.05			1.8053	1.6956	NaN	1	0	Median	30570000	11603000	18967000	1509	165	1397	3129	7312;7313;7314	7314	191	3	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term)	1267.6496	0.64956134	165	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	5	0					1	19.747	19.747	2	3.7637E-08	10132	DP1061-15	119.75	85.36			1.8572	1.7444	NaN	1	0	Median	13784000	4734300	9049800	1510	165	1397	3130	7315;7316;7317;7318;7319	7319		5	9606
SAINEVVTR	0	1	Unmodified	987.53491	0.53490874	239	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	14.546	14.546	2	2.0798E-10	4726	DP1061-15	130.75	70.729			0.96841	0.90959	NaN	1	0	Median	14344000	6580100	7763600	1511	239	1398	3131	7320;7321;7322;7323	7323		4	9606
SAPASQASLR	0	1	Unmodified	986.51451	0.51450765	313	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.502	12.502	2	0.038709	2001	DP1061-11	76.221	31.468			NaN	NaN	NaN	0	0	Median	0	0	0	1512	313	1399	3132	7324	7324		1	9606
SASPDDDLGSSNWEAADLGNEER	0	1	Unmodified	2434.0157	0.015669242	22	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	5	0					1	19.015	19.015	2	1.5249E-18	9214	DP1061-15	150.01	126.92			NaN	NaN	NaN	0	0	Median	4495700	0	4495700	1513	22	1400	3133	7325;7326;7327	7325		3	9606
SAVEDEGLK	1	0	Unmodified	946.46074	0.46074075	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			12.952	12.952	2	0.00117	3040	DP1061-13	101.43	75.537			3.6789	3.7886	NaN	1	0	Median	93652000	19490000	74162000	1514	85	1401	3134	7328;7329;7330	7329		3	9606
SDAGLESDTAMK	1	0	Oxidation (M)	1239.5289	0.52889667	422	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	1	0	2	0		1				12.65	12.65	2	0.039622	2474	DP1061-12	83.869	47.683			NaN	NaN	NaN	0	0	Median	0	0	0	1515	422	1402	3135	7331	7331	434	1	9606
SDCSLFMFGSHNKK	2	0	Oxidation (M)	1672.7338	0.73376126	412	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	1	1	2	0		1				12.4	12.4	3	0.040118	2214	DP1061-12	40.377	15.413			0.92443	0.94563	NaN	1	0	Median	28556000	13216000	15339000	1516	412	1403	3136	7332	7332	424	0	9606
SDIASHFSNKR	1	1	Unmodified	1260.6211	0.62109799	409	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	1	2	0		1				12.636	12.636	3	0.013858	2521	DP1061-12	73.781	30.269			NaN	NaN	NaN	0	0	Median	2024300	0	2024300	1517	409	1404	3137	7333;7334	7334		2	9606
SDNGELEDKPPAPPVR	1	1	Acetyl (Protein N-term)	1761.8533	0.85334235	290	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	1	0	1	3	0			1			16.236	16.236	2	7.6547E-18	6487	DP1061-13	174.9	94.658			NaN	NaN	NaN	0	0	Median	5982900	0	5982900	1518	290	1405	3138	7335;7336;7337	7335		3	9606
SDSEKLNLDSIIGR	1	1	Acetyl (Protein N-term)	1587.8104	0.8104149	210	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	1	0	1	4	0				1		20.443	20.443	2	1.5716E-117	10581	DP1061-14	279.75	231.86			NaN	NaN	NaN	0	0	Median	64795000	0	64795000	1519	210	1406	3139	7338;7339;7340;7341;7342	7339		5	9606
SDVEAIFSK	1	0	Unmodified	994.49713	0.49712625	79	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		17.443	17.443	2	0.0084898	7421	DP1061-14	88.177	56.417			1.9847	1.8956	NaN	1	0	Median	7647700	2300800	5346900	1520	79	1407	3140	7343;7344	7344		2	9606
SEGFDTYR	0	1	Unmodified	973.41412	0.4141249	92	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				1		14.949	14.949	2	0.0009839	5221	DP1061-14	106.04	65.939			1.2508	1.278	NaN	1	0	Median	6006000	2418600	3587400	1521	92	1408	3141	7345;7346;7347;7348	7348		4	9606
SEHPPLCGR	0	1	Unmodified	1051.4869	0.48691269	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.5	0.5	1	1				12.4	12.4	2	0.023063	1875	DP1061-11	90.37	61.208			NaN	NaN	NaN	0	0	Median	25163000	0	25163000	1522	321	1409	3142;3143	7349;7350	7349		2	9606
SEITELRR	0	2	Unmodified	1002.5458	0.54580778	15	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	5	0					1	13.224	13.224	2	0.051511	3545	DP1061-15	98.523	46.12		+	NaN	NaN	NaN	0	0	Median	19562000	19562000	0	1523	15	1410	3144	7351	7351		1	9606
SELVANNVTLPAGEQR	0	1	Unmodified	1696.8744	0.87441214	156	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3.33	0.471			2	1		17.041	17.041	2	2.152E-31	7373	DP1061-13	196.27	127.73			NaN	NaN	NaN	0	0	Median	12133000	0	12133000	1524	156	1411	3145;3146;3147	7352;7353;7354;7355;7356	7353		5	9606
SEQEFQEQLESAR	0	1	Unmodified	1579.7114	0.71142914	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.92	1.07	1	4	4	3	1	17.453	17.453	2	2.2326E-119	7339	DP1061-13	243.91	205.62			0.93098	0.93624	8.3084	6	0	Median	529830000	264330000	265490000	1525	395	1412	3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160	7357;7358;7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369;7370;7371;7372;7373;7374;7375;7376;7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389;7390	7367		34	9606
SEQEFQEQLESARR	0	2	Unmodified	1735.8125	0.81254017	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.5	0.5			1	1		15.965	15.965	3	1.6735E-14	6199	DP1061-13	122.34	122.34			0.98497	0.97155	0.33483	2	0	Median	137840000	83553000	54287000	1526	395	1413	3161;3162	7391;7392;7393;7394;7395;7396;7397;7398;7399	7394		9	9606
SESPKEPEQLR	1	1	Unmodified	1298.6466	0.64664404	82	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				1		12.512	12.512	3	0.001093	2651	DP1061-14	141.08	80.393			NaN	NaN	NaN	0	0	Median	39540000	0	39540000	1527	82	1414	3163	7400;7401	7400		2	9606
SETAPAAPAAAPPAEK	1	0	Acetyl (Protein N-term)	1519.7518	0.75183739	99	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	4	0				3		15.806	15.806	2	9.7505E-10	5670	DP1061-14	108.72	16.526			0.84248	0.80467	NaN	1	0	Median	31338000	16662000	14676000	1528	99	1415	3164;3165;3166	7402;7403;7404;7405;7406;7407;7408;7409	7405		8	9606
SETAPAAPAAAPPAEKAPVK	2	0	Acetyl (Protein N-term)	1915.0051	0.005091963	99	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	1	4	0				1		15.134	15.134	2	8.8343E-28	5368	DP1061-14	137.73	105.57			0.71414	0.79155	NaN	1	0	Median	9966800	4663600	5303200	1529	99	1416	3167	7410;7411;7412	7412		3	9606
SEVATLTAAGK	1	0	Unmodified	1046.5608	0.56078914	140	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		14.404	14.404	2	0.0048776	4599	DP1061-14	109.29	80.129			NaN	NaN	NaN	0	0	Median	6291200	0	6291200	1530	140	1417	3168	7413;7414	7413		2	9606
SFGLPSIGR	0	1	Unmodified	932.50797	0.50796571	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		20.741	20.741	2	0.010849	9246	DP1061-13	85.161	32.224			0.9462	0.96678	6.2916	3	0	Median	217870000	105230000	112640000	1531	67	1418	3169;3170;3171	7415;7416;7417;7418	7415		4	9606
SFNDDAMLIEK	1	0	Oxidation (M)	1297.586	0.58601761	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		17.048	17.048	2	0.0011432	7012	DP1061-14	83.869	74.214			0.91489	0.90735	22.879	2	0	Median	77015000	37108000	39907000	1532	395	1419	3172;3173	7419;7420;7421;7422;7423;7424;7425;7426;7427	7426	408	9	9606
SFNDDAMLIEK	1	0	Unmodified	1281.5911	0.59110299	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.242	18.242	2	0.012697	8771	DP1061-13	68.893	51.029			0.82321	0.84775	NaN	1	0	Median	26825000	14067000	12759000	1533	395	1419	3174	7428;7429	7428		2	9606
SFQPDTGR	0	1	Unmodified	906.41954	0.41954463	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		12.904	12.904	2	9.3394E-07	3320	DP1061-12	127.12	95.182			0.84004	0.88759	2.3962	4	0	Median	281970000	154200000	127760000	1534	89	1420	3175;3176;3177;3178	7430;7431;7432;7433;7434;7435;7436;7437;7438;7439;7440	7433		11	9606
SFQPDTGRIEVFR	0	2	Unmodified	1550.7841	0.78414057	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				17.639	17.639	3	0.00015127	6411	DP1061-12	86.911	51.388			0.87578	0.8961	NaN	1	0	Median	47927000	21447000	26480000	1535	89	1421	3179	7441;7442;7443;7444	7442		4	9606
SFVEFILEPLYK	1	0	Unmodified	1483.7963	0.79626839	316	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				24.512	24.512	2	0.0049034	14212	DP1061-12	90.827	53.105			NaN	NaN	NaN	0	0	Median	1904200	0	1904200	1536	316	1422	3180	7445	7445		1	9606
SFYPEEVSSMVLTK	1	0	Unmodified	1615.7804	0.78036033	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			20.484	20.484	2	0.0007647	11642	DP1061-13	80.014	80.014			2.0375	2.0982	NaN	1	0	Median	12419000	3960900	8457900	1537	88	1423	3181	7446;7447	7446		2	9606
SGAEVEAGDAAER	0	1	Unmodified	1260.5582	0.55822296	362	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	3	0			1			12.679	12.679	2	6.5263E-05	2793	DP1061-13	123.51	69.447			NaN	NaN	NaN	0	0	Median	3760300	0	3760300	1538	362	1424	3182	7448;7449;7450	7448		3	9606
SGEGMGIR	0	1	Unmodified	805.37524	0.37523698	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			12.708	12.708	2	2.1848E-06	2515	DP1061-12	124.59	88.007			0.94807	0.99874	0.87875	2	0	Median	78870000	38943000	39927000	1539	89	1425	3183;3184	7451;7452;7453;7454;7455;7456;7457	7453		7	9606
SGELPPNINIKEPR	1	1	Acetyl (Protein N-term)	1604.8522	0.85222014	416	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	1	0	1	4	0				1		17.86	17.86	2	0.00014983	7971	DP1061-14	79.659	79.659			0.91051	0.9184	NaN	1	0	Median	2846300	1449100	1397200	1540	416	1426	3185	7458;7459	7459		2	9606
SGFNFGGTGAPTGGFTFGTAK	1	0	Acetyl (Protein N-term)	2019.9327	0.9326553	143	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	1	0	0	3	0			1			23.445	23.445	2	1.8855E-07	15290	DP1061-13	116.96	61.561			NaN	NaN	NaN	0	0	Median	0	0	0	1541	143	1427	3186	7460	7460		1	9606
SGGASHSELIHNLR	0	1	Unmodified	1476.7433	0.74333839	111	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	5	0					1	13.425	13.425	3	3.2385E-06	3854	DP1061-15	96.059	63.561			0.70463	0.66183	NaN	1	0	Median	6073200	3617400	2455800	1542	111	1428	3187	7461;7462	7462		2	9606
SGGGGGGGLGSGGSIR	0	1	Unmodified	1231.5905	0.59052614	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	1.41	1	1	1	1	1	13.196	13.196	2	2.2761E-10	2638	DP1061-11	147.33	108.55		+	NaN	NaN	NaN	0	0	Median	39562000	39562000	0	1543	16	1429	3188;3189;3190;3191;3192	7463;7464;7465;7466;7467;7468;7469;7470;7471;7472	7464		10	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	0	Oxidation (M)	3352.5055	0.50548247	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.33	0.471		2	1			17.981	17.981	3;4	1.2531E-15	6797	DP1061-12	111.38	106.82			0.82833	0.87033	6.7389	3	0	Median	228880000	120970000	107910000	1544	89	1430	3193;3194;3195	7473;7474;7475;7476;7477;7478;7479;7480;7481;7482;7483;7484;7485;7486;7487	7479	134	15	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	0	Unmodified	3336.5106	0.51056785	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				18.711	18.711	4	0.0019235	7504	DP1061-12	42.856	42.856			0.94584	0.9938	NaN	1	0	Median	36175000	17026000	19149000	1545	89	1430	3196	7488	7488		1	9606
SGPVPSR	0	1	Acetyl (Protein N-term)	740.3817	0.38170256	254	Q8NEV1;P68400	CSNK2A3;CSNK2A1	Casein kinase II subunit alpha 3;Casein kinase II subunit alpha	yes	no	1	0	0	4	0				1		13.764	13.764	1	0.031103	4057	DP1061-14	60.972	25.771			NaN	NaN	NaN	0	0	Median	1603700	0	1603700	1546	254	1431	3197	7489	7489		1	9606
SGQGAFGNMCR	0	1	Oxidation (M)	1199.4812	0.48117539	141	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	3	0			1			12.671	12.671	2	0.00048124	2831	DP1061-13	89.029	69.758			1.6414	1.6828	NaN	1	0	Median	12099000	4847800	7251100	1547	141	1432	3198	7490;7491	7491	175	2	9606
SGVSDHWALDDHHALHLTR	0	1	Unmodified	2166.0355	0.035497664	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.251	16.251	4	0.02331	6580	DP1061-13	42.395	27.935			0.93475	0.95364	NaN	1	0	Median	66795000	37543000	29252000	1548	417	1433	3199	7492;7493	7492		2	9606
SGVSLAALKK	2	0	Unmodified	972.59678	0.59678072	99	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	1	4	0				1		14.388	14.388	2	0.0056645	4587	DP1061-14	82.287	53.369			1.1754	1.3028	NaN	1	0	Median	18139000	7506800	10632000	1549	99	1434	3200	7494;7495	7495		2	9606
SHFEQWGTLTDCVVMR	0	1	Oxidation (M)	1980.8822	0.88221641	82	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				2		18.655	18.655	2;3	0.0025953	8725	DP1061-14	91.616	59.733			NaN	NaN	NaN	0	0	Median	4557400	0	4557400	1550	82	1435	3201;3202	7496;7497;7498	7496	108	3	9606
SHISDQSPLSSK	1	0	Unmodified	1284.631	0.63099397	156	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			12.875	12.875	2	0.0015892	3023	DP1061-13	98.04	66.106			NaN	NaN	NaN	0	0	Median	2004900	0	2004900	1551	156	1436	3203	7499	7499		1	9606
SHTILLVQPTK	1	0	Acetyl (Protein N-term)	1277.7343	0.73433683	263	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	5	0					2	17.466	17.466	2	5.4379E-49	7571	DP1061-15	192.26	192.26			1.5898	1.4202	NaN	1	0	Median	40127000	14639000	25488000	1552	263	1437	3204;3205	7500;7501;7502;7503;7504;7505;7506;7507;7508	7503		9	9606
SIGVPIK	1	0	Acetyl (Protein N-term)	754.45889	0.45889025	224	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	1	0	0	5	0					1	18.42	18.42	1	0.010835	8974	DP1061-15	71.715	25.051			3.2211	2.8774	NaN	1	0	Median	12375000	3278300	9097000	1553	224	1438	3206	7509	7509		1	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Oxidation (M)	2676.216	0.21596573	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.6	0.8			3	1	1	17.493	17.493	2;3	1.665E-159	7671	DP1061-13	242.19	231.14			0.91572	0.94302	2.0882	2	0	Median	203070000	101690000	101380000	1554	395	1439	3207;3208;3209;3210;3211	7510;7511;7512;7513;7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526;7527;7528;7529;7530;7531;7532	7518	415	23	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Unmodified	2660.2211	0.22105111	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.287	18.287	3	1.6167E-50	8813	DP1061-13	161.2	151.87			0.81527	0.83957	NaN	1	0	Median	39336000	21461000	17875000	1555	395	1439	3212	7533;7534;7535;7536;7537;7538;7539	7535		7	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	1	1	Oxidation (M)	3169.4557	0.4556955	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3.4	0.49			3	2		16.033	16.033	4;5	2.2063E-30	6134	DP1061-13	129.52	129.52			0.83316	0.85403	4.134	4	0	Median	172160000	88201000	83963000	1556	395	1440	3213;3214;3215;3216;3217	7540;7541;7542;7543;7544;7545;7546;7547;7548;7549;7550;7551;7552;7553;7554;7555;7556	7544	415	17	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	1	1	Unmodified	3153.4608	0.46078088	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			2			16.766	16.766	4;5	7.3826E-07	7158	DP1061-13	84.318	74			1.0422	1.0683	NaN	1	0	Median	41343000	14606000	26737000	1557	395	1440	3218;3219	7557;7558;7559;7560;7561	7559		5	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Oxidation (M)	2319.1417	0.1416618	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			2			23.328	23.328	2;3	4.5589999999999995E-28	15346	DP1061-13	137.81	107.9			3.8884	4.0043	0.86274	2	0	Median	33459000	6438500	27021000	1558	85	1441	3220;3221	7562;7563;7564;7565;7566;7567;7568	7564	114	7	9606
SINPDEAVAYGAAVQAAILSGDK	1	0	Unmodified	2259.1383	0.13829098	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			23.405	23.405	2;3	5.6905E-36	15159	DP1061-13	174.19	126.58			NaN	NaN	NaN	0	0	Median	9062700	0	9062700	1559	88	1442	3222;3223	7569;7570;7571;7572	7570		4	9606
SIQFVDWCPTGFK	1	0	Unmodified	1583.7442	0.74424959	252	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	yes	no	0	0	0	3.5	0.5			1	1		21.511	21.511	2	4.1248E-32	12880	DP1061-13	164.33	164.33			1.5153	1.5028	9.6768	2	0	Median	159200000	66790000	92414000	1560	252	1443	3224;3225	7573;7574;7575;7576;7577;7578;7579;7580	7576		8	9606
SISADDDLQESSR	0	1	Unmodified	1421.627	0.62703081	105	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	3.5	0.5			1	1		14.53	14.53	2	6.1056E-05	4862	DP1061-13	124.42	101.07			NaN	NaN	NaN	0	0	Median	7331600	0	7331600	1561	105	1444	3226;3227	7581;7582;7583;7584;7585	7581		5	9606
SISISVAR	0	1	Unmodified	831.48142	0.48141661	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	4.25	0.829			1	1	2	15.322	15.322	2	0.00014861	5363	DP1061-15	130.04	37.573		+	NaN	NaN	NaN	0	0	Median	53190000	53190000	0	1562	60	1445	3228;3229;3230;3231	7586;7587;7588;7589	7589		4	9606
SISSDEVNFLVYR	0	1	Acetyl (Protein N-term)	1569.7675	0.76748745	406	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	1	0	0	3	0			1			23.666	23.666	2	4.2093999999999996E-26	15531	DP1061-13	197.21	140.95			NaN	NaN	NaN	0	0	Median	5242500	0	5242500	1563	406	1446	3232	7590;7591	7591		2	9606
SITNTTVCTK	1	0	Unmodified	1123.5543	0.55432356	329	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	3	0			1			12.811	12.811	2	0.013755	3012	DP1061-13	86.898	34.182			NaN	NaN	NaN	0	0	Median	5850600	0	5850600	1564	329	1447	3233	7592	7592		1	9606
SIWAFGPDATGPNILVDDTLPSEVDK	1	0	Unmodified	2756.3545	0.35449135	316	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				23.992	23.992	2	3.1623E-05	13702	DP1061-12	104.88	67.705			NaN	NaN	NaN	0	0	Median	1924800	0	1924800	1565	316	1448	3234	7593	7593		1	9606
SKAEAESLYQSK	2	0	Unmodified	1339.662	0.66195975	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.86	1.46	2	1	1	2	1	12.883	12.883	2;3	3.9584E-17	2422	DP1061-11	181.4	130.93		+	NaN	NaN	NaN	0	0	Median	63222000	63222000	0	1566	60	1449	3235;3236;3237;3238;3239;3240;3241	7594;7595;7596;7597;7598;7599;7600;7601;7602;7603;7604;7605;7606;7607	7595		14	9606
SKAEAESLYQSKYEELQITAGR	2	1	Unmodified	2500.2445	0.24454697	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	5	0					1	17.259	17.259	3	0.024534	7400	DP1061-15	59.918	30.152		+	NaN	NaN	NaN	0	0	Median	3315700	3315700	0	1567	60	1450	3242	7608	7608		1	9606
SKEEAEALYHSK	2	0	Unmodified	1390.6729	0.67285879	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	1.41	1	1	1	1	1	12.527	12.527	3	2.6059E-09	2799	DP1061-15	167.22	116.44		+	NaN	NaN	NaN	0	0	Median	122510000	122510000	0	1568	17	1451	3243;3244;3245;3246;3247	7609;7610;7611;7612;7613;7614;7615;7616;7617	7617		9	9606
SKGSYSCEVTHEGSTVTK	2	0	Unmodified	1955.8895	0.88946986	18	CON__Q1RMN8			yes	yes	0	0	1	4.5	0.5				1	1	12.546	12.546	3	6.7188E-18	2845	DP1061-15	158.45	129.9		+	NaN	NaN	NaN	0	0	Median	16063000	16063000	0	1569	18	1452	3248;3249	7618;7619;7620;7621	7620		4	
SLAESLDQAESPTFPYLNTLLR	0	1	Unmodified	2464.2486	0.24856971	443	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	2	0		1				23.92	23.92	2	0.0045332	13572	DP1061-12	77.42	34.852			NaN	NaN	NaN	0	0	Median	0	0	0	1570	443	1453	3250	7622	7622		1	9606
SLAGSSGPGASSGTSGDHGELVVR	0	1	Unmodified	2184.0407	0.040702201	132	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				2		14.975	14.975	3	2.4355E-13	5224	DP1061-14	109.85	93.873			1.751	1.7891	NaN	1	0	Median	4318200	2395400	1922800	1571	132	1454	3251;3252	7623;7624;7625;7626	7624		4	9606
SLDGVTNDR	0	1	Unmodified	975.46214	0.46213773	431	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		13.199	13.199	2	0.035459	3430	DP1061-14	69.825	7.7172			1.6708	1.7072	NaN	1	0	Median	5326300	1964300	3362000	1572	431	1455	3253	7627	7627		1	9606
SLDLDSIIAEVK	1	0	Unmodified	1301.7078	0.70784731	60;19	CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7;CON__P50446;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	1.41	1	1	1	1	1	22.509	22.509	2	4.7215000000000003E-35	11850	DP1061-12	208.63	126.35		+	NaN	NaN	NaN	0	0	Median	107460000	107460000	0	1573	19;60	1456	3254;3255;3256;3257;3258	7628;7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639;7640;7641;7642	7631		15	9606
SLEGADLPNLLFYGPPGTGK	1	0	Unmodified	2045.047	0.046956778	137	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	4	0				1		22.862	22.862	2	1.6011E-23	12980	DP1061-14	157.2	120.75			NaN	NaN	NaN	0	0	Median	1716000	0	1716000	1574	137	1457	3259	7643;7644;7645;7646	7646		4	9606
SLESINSR	0	1	Unmodified	904.46141	0.46140945	238	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	13.193	13.193	2	0.00020409	3549	DP1061-15	113.7	54.715			1.6732	1.5716	NaN	1	0	Median	5479500	2019500	3460000	1575	238	1458	3260	7647;7648;7649	7648		3	9606
SLGPPQGEEDSVPR	0	1	Unmodified	1466.7001	0.70013617	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.609	15.609	2	0.0018531	4360	DP1061-11	98.182	34.558			NaN	NaN	NaN	0	0	Median	4976800	0	4976800	1576	260	1459	3261	7650;7651	7651		2	9606
SLGYAYVNFQQPADAER	0	1	Unmodified	1927.9064	0.90644055	91	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			19.446	19.446	2	0.042666	10341	DP1061-13	71.607	40.779			NaN	NaN	NaN	0	0	Median	0	0	0	1577	91	1460	3262	7652	7652		1	9606
SLICSISNEVPEHPCVSPVSNHVYER	0	1	Acetyl (Protein N-term)	3050.4226	0.42260446	436	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	1	0	0	3	0			1			20.023	20.023	3	8.3158E-09	10934	DP1061-13	115.88	88.556			NaN	NaN	NaN	0	0	Median	25497000	0	25497000	1578	436	1461	3263	7653;7654;7655	7654		3	9606
SLLEGEGSSGGGGR	0	1	Unmodified	1261.5899	0.58985744	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.5	1.12	1	1	1	1		14.306	14.306	2	0.0020746	3434	DP1061-11	97.734	55.543		+	NaN	NaN	NaN	0	0	Median	44870000	44870000	0	1579	15	1462	3264;3265;3266;3267	7656;7657;7658;7659;7660;7661;7662	7656		7	9606
SLLVIPNTLAVNAAQDSTDLVAK	1	0	Unmodified	2352.29	0.2900406	103	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			22.292	22.292	2	1.1914E-37	13821	DP1061-13	150.12	150.12			5.6169	5.7844	NaN	1	0	Median	9617300	1873300	7744000	1580	103	1463	3268	7663;7664;7665;7666	7663		4	9606
SLNNQFASFIDK	1	0	Unmodified	1382.683	0.68302954	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3.5	1.12		1	1	1	1	19.721	19.721	2	2.1866E-08	9842	DP1061-14	164.33	93.426		+	NaN	NaN	NaN	0	0	Median	59287000	59287000	0	1581	60	1464	3269;3270;3271;3272	7667;7668;7669;7670;7671;7672;7673	7671		7	9606
SLNNQFASFIDKVR	1	1	Unmodified	1637.8526	0.85255449	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	4	1			1		1	19.873	19.873	3	0.00043585	10077	DP1061-15	126.5	97.032		+	NaN	NaN	NaN	0	0	Median	19396000	19396000	0	1582	60	1465	3273;3274	7674;7675;7676	7676		3	9606
SLNTDVLFGLLR	0	1	Unmodified	1346.7558	0.75580056	377	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	2	0		1				23.559	23.559	2	0.00011845	13160	DP1061-12	127.76	31.423			NaN	NaN	NaN	0	0	Median	3095500	0	3095500	1583	377	1466	3275	7677;7678;7679	7677		3	9606
SLPASITMHK	1	0	Oxidation (M)	1099.5696	0.56957969	405	Q9BZ95	WHSC1L1	Histone-lysine N-methyltransferase NSD3	yes	yes	0	1	0	1	0	1					14.524	14.524	2	0.017387	3817	DP1061-11	60.118	29.864			0.79655	0.84797	NaN	1	0	Median	6449200	3496900	2952300	1584	405	1467	3276	7680	7680	423	1	9606
SLPDLGLR	0	1	Unmodified	869.49707	0.49706667	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0			1			18.067	18.067	2	0.025803	8678	DP1061-13	80.229	30.103			0.83904	0.8565	NaN	1	0	Median	55980000	27430000	28550000	1585	89	1468	3277	7681;7682	7682		2	9606
SLQSVAEER	0	1	Unmodified	1017.5091	0.50908792	205	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	14.041	14.041	2	7.3415E-07	4314	DP1061-15	125.31	71.347			2.0117	1.8895	NaN	1	0	Median	20308000	6670900	13637000	1586	205	1469	3278	7683	7683		1	9606
SLSEQPVMDTATATEQAK	1	0	Oxidation (M)	1921.8939	0.89388653	105	P18615	NELFE	Negative elongation factor E	yes	yes	0	1	0	3	0			1			15.035	15.035	2	2.4298E-09	5300	DP1061-13	131.08	101.78			NaN	NaN	NaN	0	0	Median	2786700	0	2786700	1587	105	1470	3279	7684;7685	7685	146	2	9606
SLVEIIEHGLVDEQQK	1	0	Unmodified	1835.9629	0.9628928	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		8				25.82	25.82	2;3	1.9266E-81	10925	DP1061-12	249.28	175.37			NaN	NaN	NaN	0	0	Median	66976000	0	66976000	1588	46	1471	3280;3281;3282;3283;3284;3285;3286;3287	7686;7687;7688;7689;7690;7691;7692;7693;7694;7695;7696;7697;7698;7699;7700;7701	7690		16	9606
SLVGLGGTK	1	0	Unmodified	830.48617	0.48616764	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	5	0					1	15.046	15.046	2	0.022946	5152	DP1061-15	90.709	33.428		+	NaN	NaN	NaN	0	0	Median	28247000	28247000	0	1589	17	1472	3288	7702	7702		1	9606
SLVIPEK	1	0	Acetyl (Protein N-term)	826.48002	0.48001963	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	1	0	0	5	0					1	18.723	18.723	1	0.030077	8856	DP1061-15	70.912	10.554			1.1623	1.0383	NaN	1	0	Median	14275000	6571100	7704200	1590	217	1473	3289	7703	7703		0	9606
SLVNLGGSK	1	0	Unmodified	873.49198	0.4919813	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					15.492	15.492	2	0.022104	4265	DP1061-11	93.143	44.046		+	NaN	NaN	NaN	0	0	Median	22282000	22282000	0	1591	60	1474	3290	7704	7704		1	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	2 Oxidation (M)	2934.4328	0.43277522	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2.33	1.33	3	3	1	1	1	18.283	18.283	3;4	1.2472E-08	6044	DP1061-11	93.093	93.093			0.84461	0.89784	17.543	7	0	Median	355700000	199760000	155940000	1592	287	1475	3291;3292;3293;3294;3295;3296;3297;3298;3299	7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715;7716;7717;7718;7719;7720;7721;7722;7723;7724;7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738	7715	308;309	34	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	Oxidation (M)	2918.4379	0.43786059	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.29	1.03	2	2	2	1		19.593	19.593	4	3.6598E-14	8753	DP1061-11	112.64	85.068			0.83888	0.89046	7.9277	6	0	Median	155510000	92354000	63155000	1593	287	1475	3300;3301;3302;3303;3304;3305;3306	7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761	7747	308;309	23	9606
SLYDDLGVETSDSKTEGWSK	2	0	Acetyl (Protein N-term)	2258.0227	0.0226521	390	Q96I25	RBM17	Splicing factor 45	yes	yes	1	0	1	3	0			1			20.563	20.563	2	5.5571E-12	11761	DP1061-13	136.39	100.11			NaN	NaN	NaN	0	0	Median	0	0	0	1594	390	1476	3307	7762	7762		1	9606
SMFFFLAQTEQGDIFK	1	0	Oxidation (M)	1923.9077	0.9076861	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	2	0		1				23.026	23.026	2	1.4697E-05	12474	DP1061-12	122.39	81.668			NaN	NaN	NaN	0	0	Median	4417700	0	4417700	1595	321	1477	3308	7763;7764	7763	353	2	9606
SMGGAAIAPPTSLVEKDKELPR	2	1	Oxidation (M)	2282.194	0.19403172	390	Q96I25	RBM17	Splicing factor 45	yes	yes	0	1	2	4	0				1		16.362	16.362	3	0.018113	6389	DP1061-14	65.16	27.868			NaN	NaN	NaN	0	0	Median	1781300	0	1781300	1596	390	1478	3309	7765	7765	399	1	9606
SNTVVIMNMQGQIVR	0	1	2 Oxidation (M)	1720.86	0.86002441	334	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	2	0	3	0			1			15.713	15.713	2	1.6653E-08	5991	DP1061-13	139.86	95.093			NaN	NaN	NaN	0	0	Median	4105800	0	4105800	1597	334	1479	3310	7766;7767	7767	364;365	2	9606
SPAGPAATPAQAQAASTPR	0	1	Unmodified	1748.8806	0.88056015	295	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.67	0.471			1	2		14.071	14.071	2	1.5911E-23	4429	DP1061-13	172.85	131.31			NaN	NaN	NaN	0	0	Median	7167400	0	7167400	1598	295	1480	3311;3312;3313	7768;7769;7770;7771;7772	7769		5	9606
SPEQQLSATQK	1	0	Unmodified	1215.6095	0.60953025	190	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	3	0			1			12.961	12.961	2	0.0049662	3126	DP1061-13	117.53	53.318			NaN	NaN	NaN	0	0	Median	3366400	0	3366400	1599	190	1481	3314	7773;7774;7775	7774		3	9606
SPEYPEGR	0	1	Unmodified	933.41921	0.41921028	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		12.614	12.614	2	4.548900000000001E-56	2088	DP1061-11	207.6	176.99			0.79591	0.77366	6.2264	4	0	Linear	1176800000	647580000	529240000	1600	287	1482	3315;3316;3317;3318	7776;7777;7778;7779;7780;7781;7782;7783;7784;7785;7786;7787;7788;7789	7777		14	9606
SPISVPGGSALISNLGK	1	0	Unmodified	1595.8883	0.88827129	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	2.5	0.5		1	1			20.021	20.021	2	0.0032786	9038	DP1061-12	100.02	58.333			NaN	NaN	NaN	0	0	Median	11693000	0	11693000	1601	185	1483	3319;3320	7790;7791;7792;7793;7794;7795	7790		6	9606
SPPHCELMAGHLR	0	1	Oxidation (M)	1519.7024	0.70240155	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	1	0	2.67	0.471		1	2			13.188	13.188	3	0.03742	3096	DP1061-13	67.879	32.676			NaN	NaN	NaN	0	0	Median	5145900	0	5145900	1602	361	1484	3321;3322;3323	7796;7797;7798	7797	383	3	9606
SPPHCELMAGHLR	0	1	Unmodified	1503.7075	0.70748693	361	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				14.418	14.418	3	0.0037913	3837	DP1061-12	86.772	61.125			NaN	NaN	NaN	0	0	Median	4557400	0	4557400	1603	361	1484	3324	7799	7799		1	9606
SPPPESVDTPTSTK	1	0	Unmodified	1441.6937	0.69365381	161	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				13.388	13.388	2	0.015329	3039	DP1061-12	82.029	19.396			NaN	NaN	NaN	0	0	Median	0	0	0	1604	161	1485	3325	7800	7800		1	9606
SPPPGMGLNQNR	0	1	Unmodified	1266.6139	0.61390412	116	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				14.595	14.595	2	0.038338	3939	DP1061-12	72.643	2.8314			NaN	NaN	NaN	0	0	Median	2222100	0	2222100	1605	116	1486	3326	7801	7801		1	9606
SPPSVTLFPPSTEELNGNK	1	0	Unmodified	2013.0055	0.0054858935	18	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	19.328	19.328	2	4.1589999999999996E-38	9536	DP1061-15	195.1	125.29		+	NaN	NaN	NaN	0	0	Median	3603100	3603100	0	1606	18	1487	3327	7802;7803;7804	7803		3	
SPQSDPADTPTNTK	1	0	Unmodified	1457.6634	0.66341631	161	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				12.387	12.387	2	2.2843E-13	2148	DP1061-12	167.2	105.2			NaN	NaN	NaN	0	0	Median	3861300	0	3861300	1607	161	1488	3328	7805	7805		1	9606
SPSLSQSQASR	0	1	Unmodified	1146.5629	0.56291441	409	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				12.449	12.449	2	2.0423E-06	2230	DP1061-12	164.33	63.593			NaN	NaN	NaN	0	0	Median	8473700	0	8473700	1608	409	1489	3329	7806;7807	7806		2	9606
SPTLYGISHDDLK	1	0	Unmodified	1444.7198	0.71980898	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.822	16.822	2	0.00030896	5363	DP1061-11	100.72	29.745			NaN	NaN	NaN	0	0	Median	1967000	0	1967000	1609	48	1490	3330	7808;7809	7809		2	9606
SPTWFGIPR	0	1	Unmodified	1059.5502	0.55016488	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.175	20.175	2	1.5692E-10	9121	DP1061-12	133.6	92.373			1.3476	1.4607	NaN	1	0	Median	12932000	5475400	7457000	1610	258	1491	3331	7810;7811;7812	7811		3	9606
SPYQEFTDHLVK	1	0	Unmodified	1462.7092	0.70924429	97	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				2		17.806	17.806	2;3	2.5982E-08	7786	DP1061-14	113.95	95.756			1.4223	1.3584	5.6666	2	0	Median	32071000	14179000	17893000	1611	97	1492	3332;3333	7813;7814;7815;7816;7817;7818;7819;7820	7814		8	9606
SQALIEELLLYK	1	0	Unmodified	1418.8021	0.80208205	344	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		1				22.89	22.89	2	0.0003693	12299	DP1061-12	100.82	66.065			NaN	NaN	NaN	0	0	Median	3379400	0	3379400	1612	344	1493	3334	7821	7821		1	9606
SQDAEVGDGTTSVTLLAAEFLK	1	0	Unmodified	2251.122	0.12197221	398	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			23.955	23.955	2	1.797E-06	15875	DP1061-13	114.58	76.278			NaN	NaN	NaN	0	0	Median	2337500	0	2337500	1613	398	1494	3335	7822;7823	7823		2	9606
SQDIYLR	0	1	Unmodified	893.46068	0.46068117	276	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	15.105	15.105	2	0.012905	5248	DP1061-15	91.906	50.404			1.7135	1.6094	NaN	1	0	Median	13502000	6213000	7289100	1614	276	1495	3336	7824	7824		1	9606
SQEDEISSPVNK	1	0	Unmodified	1331.6205	0.62048887	343	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0		1				14.181	14.181	2	0.023875	3632	DP1061-12	76.228	40.783			NaN	NaN	NaN	0	0	Median	0	0	0	1615	343	1496	3337	7825	7825		1	9606
SQIFSTASDNQPTVTIK	1	0	Unmodified	1835.9265	0.92650729	87	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			17.655	17.655	2	2.1137E-22	8293	DP1061-13	169.58	129.21			NaN	NaN	NaN	0	0	Median	9014300	0	9014300	1616	87	1497	3338	7826;7827;7828	7828		3	9606
SQIHDIVLVGGSTR	0	1	Unmodified	1480.7998	0.79979063	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			16.285	16.285	3	0.0027743	6606	DP1061-13	52.42	52.42			5.2277	5.3431	NaN	1	0	Median	38592000	6226300	32365000	1617	88	1498	3339	7829;7830	7830		2	9606
SQPDPVDTPTSSKPQSK	2	0	Unmodified	1797.8745	0.87447172	161	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.75	0.433	1	3				12.538	12.538	3	0.0008345	2284	DP1061-12	103.13	72.588			NaN	NaN	NaN	0	0	Median	1196400	0	1196400	1618	161	1499	3340;3341;3342;3343	7831;7832;7833;7834	7833		4	9606
SQVFSTAADGQTQVEIK	1	0	Unmodified	1807.8952	0.89520716	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			3			17.123	17.123	2	2.849E-18	7437	DP1061-13	164.88	135.93			NaN	NaN	NaN	0	0	Median	10011000	0	10011000	1619	146	1500	3344;3345;3346	7835;7836;7837;7838;7839	7837		5	9606
SQYEQLAEQNR	0	1	Unmodified	1364.6321	0.6320566	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.58	1	1		1	1	14.759	14.759	2	0.0038121	3757	DP1061-11	125.97	103.05		+	NaN	NaN	NaN	0	0	Median	29581000	29581000	0	1620	15	1501	3347;3348;3349;3350	7840;7841;7842;7843;7844;7845;7846;7847	7840		8	9606
SQYEQLAEQNRK	1	1	Unmodified	1492.727	0.72701962	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3.36	1.43	2	1	2	3	3	13.59	13.59	2;3	9.8384E-05	2783	DP1061-11	119.03	69.094		+	NaN	NaN	NaN	0	0	Median	223190000	223190000	0	1621	15	1502	3351;3352;3353;3354;3355;3356;3357;3358;3359;3360;3361	7848;7849;7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860;7861;7862;7863;7864	7848		17	9606
SREIFLSQPILLELEAPLK	1	1	Unmodified	2195.2566	0.25655562	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3	0			1			22.848	22.848	3	0.020138	14603	DP1061-13	87.156	60.266			NaN	NaN	NaN	0	0	Median	4230200	0	4230200	1622	142;210;211	1503	3362	7865	7865		1	9606
SSDVHSSGSSDAHMDASGPSDSDMPSR	0	1	2 Oxidation (M)	2737.0464	0.046393798	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	2	0	2	0		1				12.416	12.416	4	2.9812E-05	2102	DP1061-12	91.378	79.717			NaN	NaN	NaN	0	0	Median	11427000	0	11427000	1623	28	1504	3363	7866;7867	7866	28;29	2	9606
SSDVHSSGSSDAHMDASGPSDSDMPSR	0	1	Oxidation (M)	2721.0515	0.051479176	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	1	0	2	0		1				12.581	12.581	4	2.9112E-05	2531	DP1061-12	87.659	85.609			NaN	NaN	NaN	0	0	Median	4260400	0	4260400	1624	28	1504	3364	7868;7869;7870;7871	7870	28;29	4	9606
SSENGALPVVSVVR	0	1	Unmodified	1412.7623	0.7623425	449	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	5	0					1	17.603	17.603	2	0.029552	7773	DP1061-15	74.698	11.482			NaN	NaN	NaN	0	0	Median	0	0	0	1625	449	1505	3365	7872	7872		1	9606
SSGEIVYCGQVFEK	1	0	Unmodified	1601.7396	0.73955814	271	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	17.725	17.725	2	8.1446E-07	7915	DP1061-15	101.93	67.236			1.7585	1.5709	NaN	1	0	Median	7661200	2633700	5027500	1626	271	1506	3366	7873;7874;7875;7876	7876		4	9606
SSGPYGGGGQYFAKPR	1	1	Unmodified	1627.7743	0.77430417	82	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				3		15.099	15.099	2;3	4.4609E-06	5532	DP1061-14	124.81	97.476			NaN	NaN	NaN	0	0	Median	30429000	0	30429000	1627	82	1507	3367;3368;3369	7877;7878;7879;7880	7878		4	9606
SSGSPYGGGYGSGGGSGGYGSR	0	1	Unmodified	1909.7827	0.7826966	187	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		14.924	14.924	2	1.6093E-16	5135	DP1061-14	144.15	119.86			NaN	NaN	NaN	0	0	Median	3843800	0	3843800	1628	187	1508	3370	7881;7882	7882		2	9606
SSMSGLHLVK	1	0	Oxidation (M)	1073.5539	0.55392962	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.67	1.49	2	1	1	1	1	13.329	13.329	2;3	1.3953E-09	2800	DP1061-11	128.38	94.833			0.97431	0.99453	6.931	6	0	Median	166110000	83302000	82804000	1629	287	1509	3371;3372;3373;3374;3375;3376	7883;7884;7885;7886;7887;7888;7889;7890;7891;7892;7893;7894;7895;7896;7897;7898;7899;7900;7901;7902;7903	7886	310	21	9606
SSMSGLHLVK	1	0	Unmodified	1057.559	0.559015	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				15.098	15.098	2	0.0010557	4305	DP1061-11	97.635	97.635			0.94681	1.0014	4.5816	2	0	Median	59334000	28649000	30685000	1630	287	1509	3377;3378	7904;7905;7906;7907	7906		3	9606
SSNAETLY	0	0	Unmodified	883.39233	0.39232683	204	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		16.303	16.303	1	0.025135	6444	DP1061-14	82.671	60.9			NaN	NaN	NaN	0	0	Median	0	0	0	1631	204	1510	3379	7908	7908		1	9606
SSTGPEPPAPTPLLAER	0	1	Unmodified	1718.8839	0.88391419	438	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	2.5	1.5	1			1		17.929	17.929	2	2.1296E-09	6432	DP1061-11	128.54	87.925			NaN	NaN	NaN	0	0	Median	2263100	0	2263100	1632	438	1511	3380;3381	7909;7910;7911	7909		3	9606
SSTPLPTISSSAENTR	0	1	Unmodified	1646.8111	0.81114318	156	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	4	0				1		16.19	16.19	2	0.023302	6068	DP1061-14	84.169	55.592			NaN	NaN	NaN	0	0	Median	3219900	0	3219900	1633	156	1512	3382	7912;7913	7912		2	9606
STAGDTHLGGEDFDNR	0	1	Unmodified	1690.7183	0.71830543	88	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0			2			14.641	14.641	2;3	3.7714E-09	4839	DP1061-13	134.68	106.51			5.2961	5.4001	NaN	1	0	Median	94611000	12339000	82272000	1634	88	1513	3383;3384	7914;7915;7916;7917	7917		4	9606
STELLIR	0	1	Unmodified	830.48617	0.48616764	255	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	no	no	0	0	0	5	0					1	15.874	15.874	2	9.8342E-06	6048	DP1061-15	160.17	73.658			NaN	NaN	NaN	0	0	Median	61748000	61748000	0	1635	255	1514	3385	7918;7919	7919		2	9606
STESLQANVQR	0	1	Unmodified	1231.6157	0.61567826	124	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4.5	0.5				1	1	13.572	13.572	2	1.165E-48	3900	DP1061-15	190.73	190.73			1.8168	1.7798	0.43776	2	0	Median	16632000	5603600	11028000	1636	124	1515	3386;3387	7920;7921;7922;7923;7924;7925;7926;7927	7927		8	9606
STFETEHAGQR	0	1	Unmodified	1261.5687	0.56872807	174	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1.5	0.5	1	1				12.403	12.403	2	0.004433	1900	DP1061-11	105.52	68.329			NaN	NaN	NaN	0	0	Median	7905500	0	7905500	1637	174	1516	3388;3389	7928;7929;7930	7928		3	9606
STGEAFVQFASQEIAEK	1	0	Unmodified	1840.8843	0.88430813	134	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3.75	0.433			1	3		20.843	20.843	2	1.8769E-32	12096	DP1061-13	143.98	143.98			1.1962	1.1863	14.253	2	0	Median	64545000	26843000	37702000	1638	134	1517	3390;3391;3392;3393	7931;7932;7933;7934;7935;7936;7937;7938;7939;7940	7934		10	9606
STLEPVEK	1	0	Unmodified	901.47566	0.47566253	85;101	P0DMV9;P0DMV8;P17066;P48741	HSPA1B;HSPA1A;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	3	0			1			12.952	12.952	2	0.007352	3033	DP1061-13	95.531	47.682			4.5165	4.6511	NaN	1	0	Median	222450000	39281000	183170000	1639	85;101	1518	3394	7941;7942;7943	7941		3	9606
STLVGHDTFTK	1	0	Unmodified	1204.6088	0.60880197	21	CON__Streptavidin			yes	yes	0	0	0	4.6	1.02	1	1	1	1	21	15.808	15.808	1;2;3	1.5123E-67	12353	DP1061-15	226.09	142.45		+	NaN	NaN	NaN	0	0	Median	12055000000	12055000000	0	1640	21	1519	3395;3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413;3414;3415;3416;3417;3418;3419	7944;7945;7946;7947;7948;7949;7950;7951;7952;7953;7954;7955;7956;7957;7958;7959;7960;7961;7962;7963;7964;7965;7966;7967;7968;7969;7970;7971;7972;7973;7974;7975;7976;7977	7976		34	
STMQELNSR	0	1	Unmodified	1064.4921	0.49205765	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					13.565	13.565	2	0.017326	2961	DP1061-11	118.33	76.905		+	NaN	NaN	NaN	0	0	Median	5382900	5382900	0	1641	16	1520	3420	7978;7979	7979		2	9606
STNGDTFLGGEDFDQALLR	0	1	Unmodified	2054.9545	0.95451296	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.696	21.696	2	7.1456E-12	13102	DP1061-13	113.63	88.087			2.2945	2.3487	NaN	1	0	Median	24478000	8058500	16419000	1642	146	1521	3421	7980;7981;7982;7983;7984	7980		5	9606
STTTGHLIYK	1	0	Unmodified	1119.5924	0.59242362	251	Q5VTE0;P68104;Q05639	EEF1A1P5;EEF1A1;EEF1A2	Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2	yes	no	0	0	0	3	0			1			13.11	13.11	2	0.029413	3234	DP1061-13	63.534	19.157			1.2134	1.2496	NaN	1	0	Median	26784000	11696000	15088000	1643	251	1522	3422	7985	7985		1	9606
STVAQLVK	1	0	Unmodified	844.50182	0.5018177	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			14.498	14.498	2	0.038656	4793	DP1061-13	73.975	8.3027			1.0928	1.1254	NaN	1	0	Median	17889000	8772400	9116600	1644	122	1523	3423	7986	7986		1	9606
SVAGGFVYTYK	1	0	Unmodified	1190.5972	0.59717465	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	3	0			1			17.65	17.65	2	0.04223	8059	DP1061-13	72.243	39.923			NaN	NaN	NaN	0	0	Median	7696300	0	7696300	1645	321	1524	3424	7987	7987		1	9606
SVASNQSEMEFSSLQDMPK	1	0	2 Oxidation (M)	2145.9194	0.91944936	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	2	0	2	0		2				16.78	16.78	2	0.0013883	5779	DP1061-12	89.541	66.449			NaN	NaN	NaN	0	0	Median	0	0	0	1646	364	1525	3425;3426	7988;7989	7989	385;386	2	9606
SVAVYGGGSMWEQAK	1	0	Oxidation (M)	1584.7242	0.72424243	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	1	0	2	0		1				16.911	16.911	2	0.01643	5796	DP1061-12	92.943	54.193			NaN	NaN	NaN	0	0	Median	7605600	0	7605600	1647	359	1526	3427	7990;7991	7990	381	2	9606
SVDETLR	0	1	Unmodified	818.4134	0.41339662	275	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	yes	no	0	0	0	5	0					1	12.74	12.74	2	2.5201E-15	3091	DP1061-15	153.15	53.764			1.4508	1.3627	NaN	1	0	Median	17078000	6621600	10457000	1648	275	1527	3428	7992;7993;7994;7995	7993		4	9606
SVDETTQAMAFDGIIFQGQSLK	1	0	Oxidation (M)	2401.1471	0.14714111	123	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	1	0	3	0			1			21.605	21.605	2	5.7306E-31	13042	DP1061-13	178.23	90.142			NaN	NaN	NaN	0	0	Median	4099500	0	4099500	1649	123	1528	3429	7996;7997	7996	167	2	9606
SVELEEALPVTTAEGMAK	1	0	Acetyl (Protein N-term);Oxidation (M)	1931.9398	0.93977409	376	Q92522	H1FX	Histone H1x	yes	yes	1	1	0	4	0				1		21.672	21.672	2	6.6059E-05	11987	DP1061-14	75.764	23.99			1.2645	1.2077	NaN	1	0	Median	3847000	1567800	2279100	1650	376	1529	3430	7998;7999	7998	392	2	9606
SVGDGETVEFDVVEGEK	1	0	Unmodified	1794.816	0.81595379	250;100	P67809;Q9Y2T7;P16989	YBX1;YBX2;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3	no	no	0	0	0	3	0			1			18.793	18.793	2	0.024575	9492	DP1061-13	83.499	47.082			NaN	NaN	NaN	0	0	Median	6211900	0	6211900	1651	250;100	1530	3431	8000	8000		1	9606
SVHCQAGDTVGEGDLLVELE	0	0	Unmodified	2126.979	0.97901315	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	20.706	20.706	2	9.114E-46	11881	DP1061-13	199.13	148.78			NaN	NaN	NaN	0	0	Median	0	0	0	1652	67	1531	3432;3433;3434	8001;8002;8003;8004;8005;8006;8007;8008;8009	8002		9	9606
SVHSSVPLLNSK	1	0	Unmodified	1266.6932	0.6932003	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				14.984	14.984	2;3	2.3133E-16	3856	DP1061-11	155.53	155.53			0.85108	0.93842	3.9027	4	0	Linear	134140000	68531000	65607000	1653	287	1532	3435;3436;3437;3438	8010;8011;8012;8013;8014;8015;8016;8017;8018;8019;8020	8013		11	9606
SVHSSVPLLNSKDPIDR	1	1	Unmodified	1862.985	0.98502522	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.707	5	2	1			16.034	16.034	2;3;4	1.2850000000000001E-20	4740	DP1061-11	164.48	129.59			0.79333	0.83277	2.7495	5	0	Median	315610000	174460000	141150000	1654	287	1533	3439;3440;3441;3442;3443;3444;3445;3446	8021;8022;8023;8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040;8041;8042;8043;8044;8045	8034		25	9606
SVIDPVPAPVGDSHVDGAAK	1	0	Unmodified	1929.9796	0.97960549	290	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	3	0			1			16.567	16.567	3	0.024921	6769	DP1061-13	70.944	26.504			NaN	NaN	NaN	0	0	Median	10139000	0	10139000	1655	290	1534	3447	8046	8046		1	9606
SVNDQPSGNLPFLKPDDIQYFDK	2	0	Unmodified	2636.2758	0.27584709	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				21.071	21.071	3	0.05065	10494	DP1061-12	63.522	41.621			NaN	NaN	NaN	0	0	Median	35493000	0	35493000	1656	46	1535	3448	8047	8047		1	9606
SVQQTVELLTR	0	1	Unmodified	1272.7038	0.70376498	415	Q9H944	MED20	Mediator of RNA polymerase II transcription subunit 20	yes	yes	0	0	0	5	0					1	18.76	18.76	2	0.0041312	9058	DP1061-15	119.68	75.303			NaN	NaN	NaN	0	0	Median	2600800	0	2600800	1657	415	1536	3449	8048;8049	8049		2	9606
SVSLTGAPESVQK	1	0	Unmodified	1301.6827	0.68269519	382	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2	0		2				15.206	15.206	2	0.0048068	4482	DP1061-12	93.096	18.176			NaN	NaN	NaN	0	0	Median	0	0	0	1658	382	1537	3450;3451	8050;8051	8050		2	9606
SVSSQSSSSVSSQVTTAGSGK	1	0	Unmodified	1956.9236	0.92360676	426	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	3	0			1			13.743	13.743	2	1.327E-46	4020	DP1061-13	205.66	168.52			NaN	NaN	NaN	0	0	Median	6049000	0	6049000	1659	426	1538	3452	8052;8053	8052		2	9606
SVTEQGAELSNEER	0	1	Unmodified	1547.7063	0.70634376	246	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4	0				2		14.29	14.29	2	0.00053969	4547	DP1061-14	111.63	79.215			NaN	NaN	NaN	0	0	Median	0	0	0	1660	246	1539	3453;3454	8054;8055	8054		2	9606
SVTNEDVTQEELGGAK	1	0	Unmodified	1675.7901	0.79007339	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.29	1.16	1		3	2	1	15.605	15.605	2	4.4363E-172	5778	DP1061-13	264.3	264.3			1.0905	1.0815	3.7809	2	0	Median	342880000	156090000	186790000	1661	68	1540	3455;3456;3457;3458;3459;3460;3461	8056;8057;8058;8059;8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072;8073;8074	8058		19	9606
SVVCSDVEQQVIVIEEEKK	2	0	Unmodified	2217.1199	0.11986372	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	2	0		1				19.077	19.077	3	0.00071435	7855	DP1061-12	102.33	77.433			NaN	NaN	NaN	0	0	Median	13465000	0	13465000	1662	352	1541	3462	8075	8075		1	9606
SVVEFLQGYIGVPHGGFPEPFR	0	1	Unmodified	2431.2325	0.23246614	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				23.392	23.392	2;3	2.9426E-129	12901	DP1061-12	252.36	238.33			0.77214	0.83698	8.5743	2	0	Median	52030000	28093000	23937000	1663	89	1542	3463;3464	8076;8077;8078;8079;8080;8081;8082;8083;8084;8085;8086;8087;8088;8089;8090;8091	8087		16	9606
SWLSYSYQSR	0	1	Unmodified	1275.5884	0.58840088	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					18.793	18.793	2	0.011773	7249	DP1061-11	94.85	49.768			NaN	NaN	NaN	0	0	Median	6084200	0	6084200	1664	321	1543	3465	8092;8093	8093		2	9606
SYCAEIAHNVSSK	1	0	Unmodified	1464.6667	0.66672755	241	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					1	14.286	14.286	2	3.5918E-11	4469	DP1061-15	118.77	94.777			1.6586	1.4817	NaN	1	0	Median	5639100	2267900	3371300	1665	241	1544	3466	8094;8095;8096;8097	8095		4	9606
SYELPDGQVITIGNER	0	1	Unmodified	1789.8846	0.88464248	199;249;228	P60709;Q6S8J3;A5A3E0;Q562R1;Q9BYX7;P63267;P68133;P68032;P62736;P63261	ACTB;POTEE;POTEF;ACTBL2;POTEKP;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		20.336	20.336	2	2.1074E-14	10437	DP1061-14	121.04	93.179			1.4154	1.4461	NaN	1	0	Median	19936000	8169800	11766000	1666	199;228;249	1545	3467	8098;8099;8100;8101;8102;8103;8104	8101		7	9606
SYLNMDAIMEAIK	1	0	2 Oxidation (M)	1529.7106	0.7105662	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	0	3	0			1			18.495	18.495	2	1.1652E-05	9069	DP1061-13	96.113	50.515			1.0232	1.0537	NaN	1	0	Median	40977000	19992000	20985000	1667	67	1546	3468	8105;8106;8107;8108	8105	79;80	4	9606
SYLNMDAIMEAIKK	2	0	2 Oxidation (M)	1657.8055	0.80552922	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	1	3	0			2			17.205	17.205	2;3	0.0037914	7767	DP1061-13	60.641	33.67			0.89768	0.90603	19.258	2	0	Median	114570000	54532000	60038000	1668	67	1547	3469;3470	8109;8110	8110	79;80	2	9606
SYLNMDAIMEAIKK	2	0	Oxidation (M)	1641.8106	0.8106146	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			1			19.367	19.367	3	0.00092153	10250	DP1061-13	71.513	71.513			1.1046	1.1149	NaN	1	0	Median	28559000	12578000	15982000	1669	67	1547	3471	8111;8112	8112	79;80	2	9606
SYSSGGEDGYVR	0	1	Unmodified	1275.5368	0.53675924	294	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				1		14.089	14.089	2	0.006886	4298	DP1061-14	71.349	57.142			0.99217	1.0138	NaN	1	0	Median	2348100	1092200	1255900	1670	294	1548	3472	8113;8114	8114		2	9606
TAAENDFVTLKK	2	0	Unmodified	1335.7034	0.70343063	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	2	1				1	14.988	14.988	2;3	0.0013183	4994	DP1061-15	94.538	61.499		+	NaN	NaN	NaN	0	0	Median	25584000	25584000	0	1671	17	1549	3473;3474	8115;8116;8117	8116		3	9606
TAEEVAALIR	0	1	Unmodified	1071.5924	0.59242362	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					17.898	17.898	2	0.0068962	6382	DP1061-11	133.58	68.825			NaN	NaN	NaN	0	0	Median	4336100	0	4336100	1672	347	1550	3475	8118;8119	8119		2	9606
TALLGGGQR	0	1	Unmodified	871.48756	0.48756462	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	13.584	13.584	2	0.00044808	3709	DP1061-13	107.32	67.214			1.1184	1.1694	1.8728	3	0	Plateau	585610000	271830000	313790000	1673	68	1551	3476;3477;3478	8120;8121;8122;8123;8124;8125;8126;8127;8128;8129	8123		10	9606
TAQCFLR	0	1	Unmodified	894.43817	0.43817159	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					15.058	15.058	2	0.039314	4007	DP1061-11	86.086	52.729			NaN	NaN	NaN	0	0	Median	3409700	0	3409700	1674	347	1552	3479	8130	8130		1	9606
TAQEVETYRR	0	2	Unmodified	1251.6208	0.62076364	102	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			1			12.464	12.464	3	0.0046419	2575	DP1061-13	98.033	55.79			NaN	NaN	NaN	0	0	Median	13979000	0	13979000	1675	102	1553	3480	8131	8131		1	9606
TAQIMFQAYGDK	1	0	Unmodified	1371.6493	0.64928657	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				19.789	19.789	2	3.0855E-16	6447	DP1061-11	133.89	133.89			0.93798	0.99201	8.2615	3	0	Plateau	148820000	72512000	76306000	1676	287	1554	3481;3482;3483	8132;8133;8134;8135;8136;8137;8138;8139;8140;8141	8135		10	9606
TAQIMFQAYGDK	1	0	Oxidation (M)	1387.6442	0.6442012	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.4	0.49	3	2				21.274	21.274	2	9.2152E-05	11263	DP1061-11	91.313	59.716			1.02	1.0858	14.224	5	0	Median	119440000	62580000	56860000	1677	287	1554	3484;3485;3486;3487;3488	8142;8143;8144;8145;8146;8147;8148;8149;8150;8151;8152;8153;8154;8155	8143	311	13	9606
TATQLAVNK	1	0	Unmodified	944.5291	0.52909508	398	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			12.554	12.554	2	0.020082	2707	DP1061-13	98.997	49.9			NaN	NaN	NaN	0	0	Median	13964000	0	13964000	1678	398	1555	3489	8156;8157	8157		2	9606
TATVGGAMMGSTHIYDMSTVMSR	0	1	3 Oxidation (M)	2451.0539	0.053851123	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	3	0	2	0		1				16.059	16.059	3	0.0412	5132	DP1061-12	43.81	14.233			NaN	NaN	NaN	0	0	Median	0	0	0	1679	296	1556	3490	8158	8158	329;330;331	1	9606
TAVAPIER	0	1	Unmodified	855.48142	0.48141661	66;94;93	P05141;Q9H0C2;P12235;P12236	SLC25A5;SLC25A31;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	2.5	1.5	1			1		13.345	13.345	2	0.00023306	3341	DP1061-14	113.41	77.918			1.265	1.3371	6.6232	2	0	Median	69715000	30722000	38993000	1680	66;93;94	1557	3491;3492	8159;8160;8161;8162;8163;8164	8161		6	9606
TAVCDIPPR	0	1	Unmodified	1027.5121	0.51206481	253;77;305;335	P07437;A6NNZ2;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	0	3	0			3			15.032	15.032	2	0.00021128	4425	DP1061-13	111.74	72.776			1.392	1.4207	8.4735	3	0	Median	103590000	44308000	59277000	1681	77;253;305;335	1558	3493;3494;3495	8165;8166;8167;8168;8169;8170;8171;8172;8173;8174	8168		10	9606
TAVETAVLLLR	0	1	Unmodified	1184.7129	0.71287311	172	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			20.45	20.45	2	0.0042373	11535	DP1061-13	99.688	67.367			NaN	NaN	NaN	0	0	Median	9413500	0	9413500	1682	172	1559	3496	8175;8176;8177	8175		3	9606
TAVVVGTITDDVR	0	1	Unmodified	1344.7249	0.72489436	276	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	17.307	17.307	2	1.5423E-23	7481	DP1061-15	149.33	113.42			1.6767	1.5749	NaN	1	0	Median	21367000	7260600	14107000	1683	276	1560	3497	8178;8179	8178		2	9606
TCTTVAFTQVNSEDKGALAK	2	0	Unmodified	2140.047	0.047033132	226	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		16.083	16.083	3	0.034887	6135	DP1061-14	43.115	29.129			1.4147	1.5681	NaN	1	0	Median	3590200	1450700	2139500	1684	226	1561	3498	8180;8181	8181		2	9606
TCVFEKENDPSVMR	1	1	Oxidation (M)	1726.7655	0.76545532	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					14.488	14.488	2;3	1.5123E-06	3536	DP1061-11	99.5	77.627			0.86729	0.91837	1.5743	2	0	Median	93679000	50884000	42795000	1685	287	1562	3499;3500	8182;8183;8184;8185;8186;8187	8186	312	6	9606
TCVFEKENDPSVMR	1	1	Unmodified	1710.7705	0.7705407	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	4					15.629	15.629	2;3	1.6583E-10	4321	DP1061-11	115.12	115.12			0.79366	0.8404	NaN	1	0	Median	44642000	22425000	22217000	1686	287	1562	3501;3502;3503;3504	8188;8189;8190;8191;8192	8188		5	9606
TDAAVSFAK	1	0	Acetyl (Protein N-term)	950.47091	0.4709115	66	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	4	0				2		17.929	17.929	1;2	5.9058E-34	8127	DP1061-14	169.12	108.36			1.3934	1.3309	1.3894	2	0	Median	31247000	13075000	18173000	1687	66	1563	3505;3506	8193;8194;8195	8195		3	9606
TDCDIEDDR	0	1	Unmodified	1137.4244	0.42443159	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				13.175	13.175	2	1.5837E-06	2513	DP1061-11	121.05	107.47			0.91661	0.96176	NaN	1	0	Median	22621000	10875000	11746000	1688	287	1564	3507;3508	8196;8197;8198;8199;8200	8197		5	9606
TDCDIEDDRLAAMFR	0	2	Oxidation (M)	1842.7876	0.78764732	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.33	0.471	4	2				19.884	19.884	2;3	4.6865E-10	6643	DP1061-12	112.02	108.06			0.99024	1.0132	9.2291	6	0	Median	326770000	164230000	162540000	1689	287	1565	3509;3510;3511;3512;3513;3514	8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213	8212	313	12	9606
TDCDIEDDRLAAMFR	0	2	Unmodified	1826.7927	0.7927327	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				19.746	19.746	2;3	4.7746E-08	8273	DP1061-11	79.492	56.575			0.92933	0.94881	10.128	3	0	Median	80505000	39440000	41065000	1690	287	1565	3515;3516;3517	8214;8215;8216;8217;8218;8219;8220;8221;8222;8223;8224;8225	8220		12	9606
TDCNHIFLNFVPTVIMDPSK	1	0	Oxidation (M)	2363.129	0.12898862	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.25	0.433	3	1				21.868	21.868	2;3	1.7117E-08	10234	DP1061-11	93.5	84.653			0.86553	0.9154	0.93601	2	0	Median	33033000	17230000	15803000	1691	287	1566	3518;3519;3520;3521	8226;8227;8228;8229;8230;8231;8232;8233;8234	8227	314	9	9606
TDCNHIFLNFVPTVIMDPSKIEESVR	1	1	Oxidation (M)	3076.4998	0.49979215	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0		2				21.922	21.922	3;4	1.2537E-20	11174	DP1061-12	125.19	111.57			0.75265	0.78775	0.33283	2	0	Median	38923000	20020000	18903000	1692	287	1567	3522;3523	8235;8236;8237;8238;8239;8240	8238	314	6	9606
TDFGIFR	0	1	Unmodified	854.42865	0.42865276	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			3			20.945	20.945	1;2	6.822E-06	9726	DP1061-13	121.68	94.367			0.98195	1.0015	5.9266	2	0	Median	349750000	163300000	186450000	1693	417	1568	3524;3525;3526	8241;8242;8243;8244;8245;8246;8247;8248	8241		8	9606
TDFGIFRM	0	1	Oxidation (M)	1001.4641	0.46405199	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3	0			1			19.355	19.355	2	0.052794	10169	DP1061-13	52.403	52.403			0.99288	1.0177	NaN	1	0	Median	11812000	6232200	5580000	1694	417	1569	3527	8249	8249		1	9606
TDITYPAGFMDVISIDK	1	0	Oxidation (M)	1900.9128	0.91283106	227	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	4	0				1		21.226	21.226	2	0.0015593	11686	DP1061-14	71.085	71.085			1.0964	1.0472	NaN	1	0	Median	6412700	3177200	3235500	1695	227	1570	3528	8250;8251;8252;8253;8254	8254	242	5	9606
TDLFYER	0	1	Unmodified	942.4447	0.44469675	355	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	5	0					1	16.972	16.972	2	0.00046215	7072	DP1061-15	143	105.36			NaN	NaN	NaN	0	0	Median	5320300	0	5320300	1696	355	1571	3529	8255;8256	8256		2	9606
TDRGGDSIGETPTPGASK	1	1	Unmodified	1744.8228	0.8227705	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2.33	0.471		2	1			13.153	13.153	2;3	0.0098035	2797	DP1061-12	95.429	78.942			NaN	NaN	NaN	0	0	Median	17064000	0	17064000	1697	46	1572	3530;3531;3532	8257;8258;8259;8260	8258		4	9606
TDSDIIAK	1	0	Unmodified	861.44436	0.4443624	81	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	4	0				1		12.736	12.736	2	0.008123	2995	DP1061-14	94.662	25.279			0.91245	0.8715	NaN	1	0	Median	5991000	2984300	3006700	1698	81	1573	3533	8261;8262;8263	8262		3	9606
TDYNASVSVPDSSGPER	0	1	Unmodified	1779.7911	0.79113602	209	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			15.994	15.994	2	7.5102E-06	6169	DP1061-13	121.24	84.568			NaN	NaN	NaN	0	0	Median	13776000	0	13776000	1699	209	1574	3534	8264;8265	8265		2	9606
TEADAEKTFEEK	2	0	Unmodified	1396.6358	0.63580458	108	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0			1			13.478	13.478	2	0.00053541	3616	DP1061-13	130.01	69.942			NaN	NaN	NaN	0	0	Median	3192000	0	3192000	1700	108	1575	3535	8266;8267;8268	8266		3	9606
TEDFIIDTLELR	0	1	Unmodified	1463.7508	0.75077476	270	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				22.685	22.685	2	4.353E-16	12115	DP1061-12	130.41	114.78			2.2057	2.3909	NaN	1	0	Median	9626500	2778300	6848200	1701	270	1576	3536	8269;8270	8269		2	9606
TEEEEIDR	0	1	Unmodified	1019.4407	0.44073359	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2	0		1				12.519	12.519	2	6.8394E-14	2313	DP1061-12	192.11	171.16			NaN	NaN	NaN	0	0	Median	13047000	0	13047000	1702	296	1577	3537	8271;8272	8272		2	9606
TEELNKEVASNSELVQSSR	1	1	Unmodified	2119.0393	0.039305217	13	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	1	4	0				1		15.677	15.677	3	0.0028846	5718	DP1061-14	89.353	38.323		+	NaN	NaN	NaN	0	0	Median	0	0	0	1703	13	1578	3538	8273	8273		1	9606
TEILPPFFK	1	0	Unmodified	1090.6063	0.60628277	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				21.398	21.398	2	0.029894	10113	DP1061-12	83.753	83.753			NaN	NaN	NaN	0	0	Median	31416000	0	31416000	1704	46	1579	3539;3540	8274;8275	8274		2	9606
TENCLSSCVDR	0	1	Unmodified	1339.5496	0.54964888	458	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	yes	yes	0	0	0	5	0					1	14.023	14.023	2	0.0003894	4286	DP1061-15	148.32	78.509			NaN	NaN	NaN	0	0	Median	7427500	0	7427500	1705	458	1580	3541	8276;8277;8278	8277		3	9606
TEQAISFAK	1	0	Acetyl (Protein N-term)	1035.5237	0.52367535	94	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	4	0				1		18.627	18.627	2	0.048111	8743	DP1061-14	47.96	13.956			2.1632	2.0661	NaN	1	0	Median	5231200	1776500	3454700	1706	94	1581	3542	8279	8279		0	9606
TEWETAAPAVAETPDIK	1	0	Acetyl (Protein N-term)	1869.8996	0.89962384	167	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	0	0	5	0					1	21.348	21.348	2	1.231E-07	11732	DP1061-15	101.39	77.56			1.1535	1.0305	NaN	1	0	Median	5492400	3143500	2348900	1707	167	1582	3543	8280;8281;8282;8283	8280		4	9606
TFEDFVR	0	1	Unmodified	912.43413	0.43413207	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					21.927	21.927	1;2	2.5722E-06	11250	DP1061-11	126.24	111.02			0.95486	1.0049	11.939	3	0	Plateau	36664000	18660000	18004000	1708	287	1583	3544;3545;3546	8284;8285;8286;8287	8286		3	9606
TFQVLGNLYSEGDCTYLK	1	0	Unmodified	2106.9932	0.99320665	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		21.312	21.312	2	1.0761E-106	12637	DP1061-13	267.77	230.16			1.0915	1.0425	NaN	1	0	Median	68257000	3563200	64694000	1709	395	1584	3547;3548;3549;3550	8288;8289;8290;8291;8292;8293;8294;8295;8296	8288		9	9606
TFTDCFNCLPIAAIVDEK	1	0	Unmodified	2112.986	0.98601278	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0.535			1	5	1	23.262	23.262	2;3	3.9118E-11	13667	DP1061-14	141.65	111.31			NaN	NaN	NaN	0	0	Median	149030000	0	149030000	1710	142;210;211	1585	3551;3552;3553;3554;3555;3556;3557	8297;8298;8299;8300;8301;8302;8303;8304;8305;8306;8307	8304		11	9606
TFYNQAIMSSK	1	0	Oxidation (M)	1304.6071	0.60708741	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		15.658	15.658	2	2.7771E-13	5857	DP1061-13	129.88	129.88			0.96014	0.95223	3.8464	2	0	Median	239680000	119430000	120240000	1711	417	1586	3558;3559	8308;8309;8310;8311;8312;8313;8314;8315;8316;8317;8318	8309	431	11	9606
TFYNQAIMSSK	1	0	Unmodified	1288.6122	0.61217279	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.896	16.896	2	1.8887E-05	7232	DP1061-13	107.21	107.21			0.84457	0.83761	20.199	2	0	Median	86344000	43033000	43311000	1712	417	1586	3560;3561	8319;8320;8321;8322;8323	8322		4	9606
TGAAPIIDVVR	0	1	Unmodified	1110.6397	0.63970816	162	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	5	0					1	17.526	17.526	2	0.0049152	7605	DP1061-15	78.655	56.569			1.2503	1.1744	NaN	1	0	Median	23895000	10136000	13759000	1713	162	1587	3562	8324;8325;8326;8327	8327		4	9606
TGAIVDVPVGEELLGR	0	1	Unmodified	1623.8832	0.88318591	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.823	20.823	2	7.5988E-29	12016	DP1061-13	145.14	145.14			0.90819	0.92812	NaN	1	0	Median	40076000	21984000	18092000	1714	122	1588	3563	8328;8329;8330;8331;8332;8333;8334	8331		7	9606
TGNFQVTELGR	0	1	Unmodified	1220.6149	0.61494998	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.129	17.129	2	0.0047435	5662	DP1061-11	119.16	71.196			NaN	NaN	NaN	0	0	Median	3465200	0	3465200	1715	48	1589	3564	8335	8335		1	9606
TGQLFLK	1	0	Unmodified	805.46979	0.46978929	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					16.317	16.317	2	0.040256	4958	DP1061-11	85.359	52.889			NaN	NaN	NaN	0	0	Median	1968200	0	1968200	1716	347	1590	3565	8336	8336		1	9606
TGTAEMSSILEER	0	1	Oxidation (M)	1438.661	0.66097347	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			15.483	15.483	2	5.1816E-05	5790	DP1061-13	89.805	69.601			1.3824	1.4175	NaN	1	0	Median	14463000	7318800	7144600	1717	122	1591	3566	8337;8338;8339	8338	166	3	9606
TGVHHYSGNNIELGTACGK	1	0	Unmodified	2013.9327	0.93267208	238	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	13.77	13.77	3	0.016792	4088	DP1061-15	77.137	37.175			NaN	NaN	NaN	0	0	Median	4445200	0	4445200	1718	238	1592	3567	8340	8340		1	9606
THEDIEAQIR	0	1	Unmodified	1210.5942	0.59421454	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	3	1		1		1		13.964	13.964	2;3	0.011179	3444	DP1061-12	109.29	79.817			NaN	NaN	NaN	0	0	Median	27349000	0	27349000	1719	46	1593	3568;3569	8341;8342;8343;8344	8341		4	9606
THNLEPYFESFINNLR	0	1	Unmodified	1992.9694	0.96937516	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				22.43	22.43	3	0.00021498	11781	DP1061-12	93.768	61.38		+	NaN	NaN	NaN	0	0	Median	3583500	3583500	0	1720	60	1594	3570	8345;8346	8345		2	9606
THSDQFLVAFK	1	0	Unmodified	1291.6561	0.65608651	140	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		17.578	17.578	2	0.011028	7653	DP1061-14	70.552	51.237			1.4452	1.3803	NaN	1	0	Median	8763900	3509000	5254900	1721	140	1595	3571	8347	8347		1	9606
TIAECLADELINAAK	1	0	Unmodified	1630.8236	0.82362212	167	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	23.137	23.137	2	5.9448E-09	13318	DP1061-15	107.34	81.228			1.7047	1.5228	NaN	1	0	Median	8185600	2932600	5253000	1722	167	1596	3572	8348;8349;8350;8351;8352;8353	8350		6	9606
TIAFLLPMFR	0	1	Oxidation (M)	1223.6737	0.67365083	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	2	0		1				22.547	22.547	2	0.025084	11794	DP1061-12	96.253	64.317			NaN	NaN	NaN	0	0	Median	19343000	0	19343000	1723	352	1597	3573	8354;8355	8354	372	2	9606
TIAFLLPMFR	0	1	Unmodified	1207.6787	0.67873621	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				24.069	24.069	2	0.012783	13726	DP1061-12	121.62	93.737			NaN	NaN	NaN	0	0	Median	5219400	0	5219400	1724	352	1597	3574	8356;8357	8356		2	9606
TIAQGNLSNTDVQAAK	1	0	Unmodified	1629.8322	0.83221298	115	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	3	0			1			14.991	14.991	2	2.1085E-09	5271	DP1061-13	109.16	109.16			1.3173	1.3566	NaN	1	0	Median	5213100	2489400	2723700	1725	115	1598	3575	8358;8359;8360;8361	8359		4	9606
TIDEGDADEVTK	1	0	Unmodified	1291.578	0.57795535	354	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	2	0		1				14.248	14.248	2	0.039186	3681	DP1061-12	72.607	24.738			NaN	NaN	NaN	0	0	Median	0	0	0	1726	354	1599	3576	8362	8362		1	9606
TIGGGDDSFNTFFSETGAGK	1	0	Unmodified	2006.8858	0.88576469	252;400	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	4	0.816			1	1	1	20.908	20.908	2	4.934E-92	12133	DP1061-13	198.29	166.23			1.4759	1.5199	13.634	3	0	Plateau	274380000	112730000	161640000	1727	252;400	1600	3577;3578;3579	8363;8364;8365;8366;8367;8368;8369;8370;8371;8372;8373	8365		11	9606
TILQGSSEGTGLSALLPQPK	1	0	Unmodified	1996.0841	0.084070566	378	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	3	0			1			20.8	20.8	2	2.2402E-16	12044	DP1061-13	150.16	99.873			NaN	NaN	NaN	0	0	Median	5278100	0	5278100	1728	378	1601	3580	8374;8375;8376	8376		3	9606
TINLYPLTNYTFGTK	1	0	Unmodified	1744.9036	0.903587	40	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	5	0					1	21.587	21.587	2	5.948100000000001E-75	11952	DP1061-15	202	153.89			2.7905	2.4928	NaN	1	0	Median	11670000	3110400	8559600	1729	40	1602	3581	8377;8378;8379;8380;8381;8382;8383;8384	8381		8	9606
TIQFVDWCPTGFK	1	0	Unmodified	1597.7599	0.75989966	400	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		21.589	21.589	2	5.2272E-42	12951	DP1061-13	172.61	150.08			1.2733	1.2628	6.6819	2	0	Median	62178000	25919000	36259000	1730	400	1603	3582;3583	8385;8386;8387;8388;8389;8390;8391;8392	8386		8	9606
TIQGHLQSENFK	1	0	Unmodified	1400.7048	0.70482762	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				14.522	14.522	2	0.0046084	3844	DP1061-12	91.469	45.079			NaN	NaN	NaN	0	0	Median	3431600	0	3431600	1731	28	1604	3584	8393;8394	8394		2	9606
TIQVENSHLILTGAGALNK	1	0	Unmodified	1978.0847	0.084739268	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.88	0.781	3	3	2			18.978	18.978	2;3	4.0509E-138	8481	DP1061-13	241.64	222.85			0.97547	1.0384	3.5733	5	0	Median	471380000	238620000	232760000	1732	287	1605	3585;3586;3587;3588;3589;3590;3591;3592	8395;8396;8397;8398;8399;8400;8401;8402;8403;8404;8405;8406;8407;8408;8409;8410;8411;8412;8413;8414;8415;8416;8417;8418;8419;8420;8421;8422;8423	8421		29	9606
TITLEVEPSDTIENVK	1	0	Unmodified	1786.92	0.92002493	244	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3.5	1.12		1	1	1	1	18.903	18.903	2	1.3031E-61	8973	DP1061-15	190.46	190.46			1.0177	0.90917	NaN	1	0	Median	26032000	4873800	21158000	1733	244	1606	3593;3594;3595;3596	8424;8425;8426;8427;8428;8429;8430;8431;8432;8433;8434	8431		11	9606
TKTPGPGAQSALR	1	1	Unmodified	1282.6993	0.69934831	215	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					3	12.454	12.454	3	2.4192E-06	2763	DP1061-15	101.45	72.154			1.2741	1.2237	NaN	1	0	Median	8177100	2502500	5674600	1734	215	1607	3597;3598;3599	8435;8436;8437;8438	8435		4	9606
TLAAEMQELR	0	1	Oxidation (M)	1176.5809	0.58087266	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	1	0	2	0		1				14.933	14.933	2	0.027899	4183	DP1061-12	88.177	47.453			NaN	NaN	NaN	0	0	Median	7221900	0	7221900	1735	364	1608	3600	8439	8439	387	1	9606
TLATDILMGVLK	1	0	Oxidation (M)	1289.7265	0.72647426	33	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2.5	0.5		1	1			22.926	22.926	2	0.00073563	14574	DP1061-13	105.2	66.628			NaN	NaN	NaN	0	0	Median	15660000	0	15660000	1736	33	1609	3601;3602	8440;8441;8442;8443	8442	35	4	9606
TLDCGQGAVR	0	1	Unmodified	1075.508	0.50804206	402	Q9BRX9	WDR83	WD repeat domain-containing protein 83	yes	yes	0	0	0	4	0				1		12.732	12.732	2	0.029208	2987	DP1061-14	78.334	33.957			NaN	NaN	NaN	0	0	Median	1529400	0	1529400	1737	402	1610	3603	8444	8444		1	9606
TLDNLADELTAILSAPAK	1	0	Unmodified	1854.9939	0.99385857	351	Q6ZN66	GBP6	Guanylate-binding protein 6	yes	yes	0	0	0	2	0		1				19.295	19.295	3	0.0017027	8223	DP1061-12	90.561	47.614			NaN	NaN	NaN	0	0	Median	0	0	0	1738	351	1611	3604	8445	8445		1	9606
TLLDIDNTR	0	1	Unmodified	1059.556	0.55603811	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	4	0				1		17.19	17.19	2	0.022964	7181	DP1061-14	90.657	23.625		+	NaN	NaN	NaN	0	0	Median	6105900	6105900	0	1739	16	1612	3605	8446	8446		1	9606
TLLEGEESR	0	1	Unmodified	1032.5088	0.50875357	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	4	0.816			1	1	1	14.297	14.297	2	0.015055	4619	DP1061-13	124.08	87.685		+	NaN	NaN	NaN	0	0	Median	109380000	109380000	0	1740	60	1613	3606;3607;3608	8447;8448;8449;8450;8451	8447		5	9606
TLMNLGGLAVAR	0	1	Oxidation (M)	1230.6754	0.67544174	144	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	17.698	17.698	2	0.00076072	7843	DP1061-15	103.55	57.388			NaN	NaN	NaN	0	0	Median	20351000	0	20351000	1741	144	1614	3609	8452;8453	8453	180	2	9606
TLMNLGGLAVAR	0	1	Unmodified	1214.6805	0.68052712	144	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	19.458	19.458	2	0.00029022	9779	DP1061-15	112.11	59.018			NaN	NaN	NaN	0	0	Median	8250600	0	8250600	1742	144	1614	3610	8454;8455	8454		2	9606
TLPSMLILSGLTAGMLMTDAGR	0	1	2 Oxidation (M)	2280.1528	0.15276053	425	Q9NUQ2	AGPAT5	1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon	yes	yes	0	2	0	5	0					1	21.245	21.245	2	0.010078	11643	DP1061-15	69.456	21.227			NaN	NaN	NaN	0	0	Median	0	0	0	1743	425	1615	3611	8456	8456	436;437	1	9606
TLRDPSLPLLELQDIMTSVSGR	0	2	Oxidation (M)	2456.2945	0.29447405	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0.471	1	7	1			25.617	25.617	2;3	2.1671E-38	11111	DP1061-12	154.79	154.79			0.78131	0.79769	20.165	5	0	Median	200290000	109780000	90505000	1744	287	1616	3612;3613;3614;3615;3616;3617;3618;3619;3620	8457;8458;8459;8460;8461;8462;8463;8464;8465;8466;8467;8468;8469;8470;8471;8472;8473;8474;8475;8476;8477;8478;8479;8480;8481;8482;8483;8484;8485	8464	276	29	9606
TLRDPSLPLLELQDIMTSVSGR	0	2	Unmodified	2440.2996	0.29955942	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1				24.468	24.468	3	1.3257E-27	14109	DP1061-12	135.64	108.12			0.7741	0.79206	NaN	1	0	Median	20077000	11477000	8599300	1745	287	1616	3621	8486;8487	8487		2	9606
TLSDYNIQK	1	0	Unmodified	1080.5451	0.54513908	244	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	5	0					1	15.033	15.033	2	0.02522	5130	DP1061-15	73.248	50.467			1.4034	1.2537	NaN	1	0	Median	7457800	3063600	4394200	1746	244	1617	3622	8488	8488		1	9606
TLTAEEAEEEWERR	0	2	Unmodified	1747.8013	0.80130678	139	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	4	0				1		17.579	17.579	3	0.048526	7630	DP1061-14	61.11	31.198			NaN	NaN	NaN	0	0	Median	5581300	0	5581300	1747	139	1618	3623	8489	8489		1	9606
TLVLSNLSYSATEETLQEVFEK	1	0	Unmodified	2500.2585	0.2584657	108	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				24.148	24.148	2	7.9308E-31	13893	DP1061-12	172.91	127.71			NaN	NaN	NaN	0	0	Median	2512300	0	2512300	1748	108	1619	3624	8490;8491;8492	8492		3	9606
TNAENEFVTIK	1	0	Unmodified	1264.6299	0.62993134	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					16.829	16.829	2	0.0061777	5356	DP1061-11	94.465	44.358		+	NaN	NaN	NaN	0	0	Median	8048600	8048600	0	1749	60	1620	3625	8493;8494	8494		2	9606
TNAENEFVTIKK	2	0	Unmodified	1392.7249	0.72489436	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3.75	1.64	1			1	2	14.798	14.798	2;3	5.5871E-06	3930	DP1061-11	145.83	100.07		+	NaN	NaN	NaN	0	0	Median	47659000	47659000	0	1750	60	1621	3626;3627;3628;3629	8495;8496;8497;8498;8499;8500	8495		6	9606
TNMLVQFLMEMYKMKK	3	0	3 Oxidation (M)	2082.0022	0.0021968909	32	O15480	MAGEB3	Melanoma-associated antigen B3	yes	yes	0	3	2	2	1	1		1			20.577	20.577	2	0.028746	9099	DP1061-11	65.232	24.464			NaN	NaN	NaN	0	0	Median	129590000	129590000	0	1751	32	1622	3630;3631	8501;8502	8501	32;33;34	2	9606
TNQYGILFK	1	0	Acetyl (Protein N-term)	1124.5866	0.58660996	407	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	1	0	0	4	0				1		21.698	21.698	1	0.0099717	12080	DP1061-14	78.113	26.258			NaN	NaN	NaN	0	0	Median	1179400	0	1179400	1752	407	1623	3632	8503	8503		1	9606
TNYNDRYDEIRR	0	3	Unmodified	1613.7546	0.75463136	226	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	2	4	0				1		13.575	13.575	3	0.022974	3799	DP1061-14	52.247	52.247			1.8207	1.9239	NaN	1	0	Median	6810000	2454600	4355400	1753	226	1624	3633	8504;8505	8504		2	9606
TPEVDDEALEKFDK	2	0	Unmodified	1634.7675	0.76754703	10	CON__P02754			yes	yes	0	0	1	4.5	0.5				1	1	17.015	17.015	3	0.042133	7129	DP1061-15	91.845	59.221		+	NaN	NaN	NaN	0	0	Median	8773100	8773100	0	1754	10	1625	3634;3635	8506;8507	8507		2	
TPGLMELPPSDESK	1	0	Oxidation (M)	1515.7127	0.71267469	463				yes	yes	0	1	0	1	0	1					17.338	17.338	2	0.018223	5894	DP1061-11	55.721	55.721	+		0.89718	0.9551	NaN	1	0	Median	5724900	3376600	2348300	1755	463	1626	3636	8508	8508	461	1	9606
TPGPGAQSALR	0	1	Unmodified	1053.5567	0.55670682	215	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	13.379	13.379	2	0.0052646	3631	DP1061-15	77.662	53.441			1.1628	1.0922	NaN	1	0	Median	23391000	10125000	13266000	1756	215	1627	3637	8509;8510;8511	8511		3	9606
TPIGTPAMNMATPTPGHIMSMTPEQLQAWR	0	1	4 Oxidation (M)	3328.5349	0.5348738	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	4	0	2	0		1				18.377	18.377	3	0.023324	7274	DP1061-12	50.499	24.504			NaN	NaN	NaN	0	0	Median	0	0	0	1757	46	1628	3638	8512	8512	54;55;56;57	1	9606
TPQVIGVMQSQNSSAGNR	0	1	Oxidation (M)	1888.9061	0.90612297	57	O95639	CPSF4	Cleavage and polyadenylation specificity factor subunit 4	yes	yes	0	1	0	4	0				1		14.665	14.665	2	1.6647E-14	4910	DP1061-14	146.59	114.58			NaN	NaN	NaN	0	0	Median	1538900	0	1538900	1758	57	1629	3639	8513;8514;8515;8516	8513	67	4	9606
TPVEEVPAAIAPFQGR	0	1	Unmodified	1680.8835	0.88352026	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.67	0.471	1	2				19.498	19.498	2	2.8371E-23	7985	DP1061-11	180.97	129.72			NaN	NaN	NaN	0	0	Median	33867000	0	33867000	1759	321	1630	3640;3641;3642	8517;8518;8519;8520;8521;8522	8518		6	9606
TPVPSDIDISR	0	1	Unmodified	1198.6194	0.61936665	90	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	2.5	1.5	1			1		16.485	16.485	2	0.003474	4908	DP1061-11	82.75	25.94			0.84773	0.85833	2.5555	2	0	Median	125160000	66851000	58308000	1760	90	1631	3643;3644	8523;8524	8523		2	9606
TPVQYSQQQNSPQK	1	0	Unmodified	1631.7903	0.79034816	161	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0			2			12.886	12.886	2	0.0043457	3081	DP1061-13	93.959	58			NaN	NaN	NaN	0	0	Median	0	0	0	1761	161	1632	3645;3646	8525;8526	8525		2	9606
TQDPSSPGTTPPQAR	0	1	Unmodified	1538.7325	0.73249893	288	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	3	0			1			12.944	12.944	2	0.032218	3161	DP1061-13	74.237	36.681			NaN	NaN	NaN	0	0	Median	0	0	0	1762	288	1633	3647	8527	8527		1	9606
TQLQLDER	0	1	Unmodified	1001.5142	0.5141733	194	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		14.584	14.584	2	0.0019613	4788	DP1061-14	101.6	50.265			1.3499	1.3792	NaN	1	0	Median	11297000	5225100	6072100	1763	194	1634	3648	8528;8529	8529		2	9606
TQPMTAQAASYR	0	1	Oxidation (M)	1339.619	0.61904908	392	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	1	0	3	0			1			12.906	12.906	2	0.0019783	2981	DP1061-13	73.951	61.375			1.1773	1.2051	NaN	1	0	Median	9914800	4646200	5268600	1764	392	1635	3649	8530;8531;8532	8531	400	3	9606
TQQAAQANITLQEQIEAIHK	1	0	Unmodified	2234.1655	0.16550878	328	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				18.05	18.05	3	0.0054424	7004	DP1061-12	90.581	60.154			NaN	NaN	NaN	0	0	Median	8394800	0	8394800	1765	328	1636	3650	8533;8534	8534		2	9606
TQSSASLAASYAAQQHPQAAASYR	0	1	Unmodified	2464.1731	0.17311336	392	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3.5	0.5			1	1		16.128	16.128	3	2.1624E-20	6403	DP1061-13	126.86	126.86			1.272	1.3009	14.955	2	0	Median	28890000	12845000	16044000	1766	392	1637	3651;3652	8535;8536;8537;8538;8539;8540;8541;8542;8543;8544;8545	8539		11	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Oxidation (M)	2783.2353	0.23532096	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			19.386	19.386	3	2.004E-09	10219	DP1061-13	100.92	89.355			0.94005	0.96808	NaN	1	0	Median	67434000	39745000	27689000	1767	395	1638	3653	8546;8547;8548;8549;8550;8551;8552	8547	416	7	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Unmodified	2767.2404	0.24040634	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.275	20.275	3	0.01313	11394	DP1061-13	73.459	73.459			0.75108	0.77347	NaN	1	0	Median	16123000	8208500	7914600	1768	395	1638	3654	8553	8553		0	9606
TSDIFGSPVTATSR	0	1	Unmodified	1437.71	0.70997257	413	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	5	0					1	17.427	17.427	2	0.0078715	7658	DP1061-15	87.001	42.137			NaN	NaN	NaN	0	0	Median	1973100	0	1973100	1769	413	1639	3655	8554	8554		1	9606
TSEKHSVDSVLTALQDSSK	2	0	Unmodified	2031.012	0.012027834	342	Q5T5X7	BEND3	BEN domain-containing protein 3	yes	yes	0	0	1	5	0					1	21.263	21.263	3	0.012828	11757	DP1061-15	36.816	19.732			0.25189	0.25831	NaN	1	0	Median	37806000	32261000	5545200	1770	342	1640	3656	8555	8555		1	9606
TSFFQALGITTK	1	0	Unmodified	1312.7027	0.70270235	71	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		21.664	21.664	2	1.9691E-16	11857	DP1061-14	136.96	136.96			2.3338	2.2291	NaN	1	0	Median	9774900	3064900	6710000	1771	71	1641	3657	8556;8557;8558;8559	8556		4	9606
TSLYSEDDCK	1	0	Unmodified	1216.4918	0.49178288	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.981	13.981	2	4.4044E-06	3162	DP1061-11	114.89	91.126			1.0031	1.0678	NaN	1	0	Median	4369700	1857200	2512400	1772	26	1642	3658	8560;8561;8562	8562		3	9606
TSNEVQYDQR	0	1	Unmodified	1238.5527	0.55274365	298	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3	0			1			12.706	12.706	2	3.8699E-22	2844	DP1061-13	199.46	140.86			NaN	NaN	NaN	0	0	Median	9584500	0	9584500	1773	298	1643	3659	8563;8564	8563		2	9606
TSQNSELNNMQDLVEDYKK	2	0	Oxidation (M)	2271.0325	0.03250528	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	3	1.63	1		1		1	15.782	15.782	3	0.019847	4486	DP1061-11	76.586	60.612		+	NaN	NaN	NaN	0	0	Median	29127000	29127000	0	1774	17	1644	3660;3661;3662	8565;8566;8567	8565	9	3	9606
TSQNSELNNMQDLVEDYKK	2	0	Unmodified	2255.0376	0.037590658	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	5	0					1	18.609	18.609	3	0.00039156	8791	DP1061-15	107.65	72.906		+	NaN	NaN	NaN	0	0	Median	7907000	7907000	0	1775	17	1644	3663	8568;8569;8570	8568		3	9606
TSTAPAASPNVR	0	1	Unmodified	1170.5993	0.59929991	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	12.511	12.511	2	1.87E-31	2205	DP1061-12	159.79	118.36			0.72175	0.73632	11.401	5	0	Median	559350000	321650000	237700000	1776	89	1645	3664;3665;3666;3667;3668	8571;8572;8573;8574;8575;8576;8577;8578;8579;8580;8581;8582;8583;8584;8585;8586;8587;8588;8589;8590;8591;8592;8593;8594;8595	8578		25	9606
TSTTSSMVASAEQPR	0	1	Oxidation (M)	1567.7148	0.71479996	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	4.5	0.5				1	1	12.786	12.786	2	0.00024194	2878	DP1061-14	113.24	97.868			NaN	NaN	NaN	0	0	Median	14167000	0	14167000	1777	155	1646	3669;3670	8596;8597;8598	8596	187	3	9606
TSTTSSMVASAEQPR	0	1	Unmodified	1551.7199	0.71988533	155	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		14.775	14.775	2	0.015026	4941	DP1061-14	85.845	62.096			NaN	NaN	NaN	0	0	Median	3031200	0	3031200	1778	155	1646	3671	8599;8600	8599		2	9606
TTAARPTFEPAR	0	2	Acetyl (Protein N-term)	1358.6943	0.69426293	428	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	1	0	1	4	0				1		15.586	15.586	2	0.0029333	5649	DP1061-14	97.472	60.28			NaN	NaN	NaN	0	0	Median	0	0	0	1779	428	1647	3672	8601	8601		1	9606
TTDGYLLR	0	1	Unmodified	937.4869	0.48689592	202	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		15.992	15.992	2	0.043252	5995	DP1061-14	72.789	50.298			1.5421	1.5756	NaN	1	0	Median	10953000	3482600	7470000	1780	202	1648	3673	8602	8602		1	9606
TTGFGMIYDSLDYAK	1	0	Oxidation (M)	1696.7654	0.76543854	234	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	5	0					1	20.245	20.245	2	2.433E-09	10565	DP1061-15	106.49	80.761			1.5993	1.4287	NaN	1	0	Median	16220000	6998900	9221100	1781	234	1649	3674	8603;8604;8605;8606	8605	248	4	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	1	Oxidation (M)	3198.6019	0.60194904	199;249	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		19.783	19.783	4	4.3397E-10	9977	DP1061-14	93.179	93.179			1.4431	1.4745	NaN	1	0	Median	7807000	3239300	4567700	1782	199;249	1650	3675	8607;8608;8609;8610	8608	228	4	9606
TTHFVEGGDAGNREDQINR	0	2	Unmodified	2114.973	0.97295699	104	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				2		13.53	13.53	3;4	6.5238E-08	3706	DP1061-14	91.592	75.286			1.9677	1.8764	0.87989	2	0	Median	25389000	8316400	17073000	1783	104	1651	3676;3677	8611;8612;8613;8614;8615;8616;8617;8618;8619;8620;8621	8612		11	9606
TTLPERPLTEVK	1	1	Unmodified	1382.7769	0.77692993	394	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				15.247	15.247	3	0.034847	4505	DP1061-12	75.788	40.868			NaN	NaN	NaN	0	0	Median	6709900	0	6709900	1784	394	1652	3678	8622	8622		1	9606
TTPSVVAFTADGER	0	1	Unmodified	1449.71	0.70997257	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.529	17.529	2	0.00050551	7940	DP1061-13	85.845	56.071			1.8416	1.8832	NaN	1	0	Median	32907000	12600000	20307000	1785	146	1653	3679	8623;8624;8625;8626;8627	8626		5	9606
TTPSYVAFTDTER	0	1	Unmodified	1486.694	0.69398816	85;88;101	P0DMV9;P0DMV8;P11142;P54652;P17066;P48741	HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	3.6	0.8			3	1	1	19.317	19.317	2	2.0626E-07	7894	DP1061-13	108.9	72.318			4.445	4.5145	19.968	3	0	Plateau	281450000	55815000	225640000	1786	85;88;101	1654	3680;3681;3682;3683;3684	8628;8629;8630;8631;8632;8633;8634;8635;8636;8637;8638;8639;8640;8641	8629		14	9606
TTQVPQFILDDFIQNDR	0	1	Unmodified	2049.0167	0.016719282	279	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				23.234	23.234	2	0.0070938	12670	DP1061-12	96.414	39.462			NaN	NaN	NaN	0	0	Median	7850900	0	7850900	1787	279	1655	3685	8642	8642		1	9606
TTTAAAVASTGPSSR	0	1	Unmodified	1376.6896	0.68957148	129	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	2	0		1				13.055	13.055	2	0.0052746	2792	DP1061-12	91.961	27.141			NaN	NaN	NaN	0	0	Median	0	0	0	1788	129	1656	3686	8643	8643		1	9606
TTTVNIGSISTADGSALVK	1	0	Unmodified	1833.9684	0.96837211	385	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				1		18.693	18.693	2	3.2226E-15	8737	DP1061-14	141.59	82.159			NaN	NaN	NaN	0	0	Median	2954900	0	2954900	1789	385	1657	3687	8644;8645	8644		2	9606
TTVEYLIK	1	0	Unmodified	965.54335	0.54334816	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.6	0.8	3	1	1			20.807	20.807	2	0.0047879	11246	DP1061-11	98.418	58.755			0.93889	0.98649	5.0682	5	0	Median	533840000	274100000	259740000	1790	287	1658	3688;3689;3690;3691;3692	8646;8647;8648;8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659	8653		12	9606
TTVQQEPLESGAK	1	0	Unmodified	1386.6991	0.69907354	174	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1.67	0.471	1	2				13.745	13.745	2	0.0028703	3329	DP1061-12	105.98	53.25			NaN	NaN	NaN	0	0	Median	0	0	0	1791	174	1659	3693;3694;3695	8660;8661;8662	8662		3	9606
TVAGGAWTYNTTSAVTVK	1	0	Unmodified	1825.921	0.92102798	207	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	5	0					1	17.924	17.924	2	4.4889E-07	8065	DP1061-15	98.654	98.654			0.84184	0.75203	NaN	1	0	Median	9965300	5463900	4501400	1792	207	1660	3696	8663	8663		1	9606
TVAIHSDVDASSVHVK	1	0	Unmodified	1663.8529	0.85294842	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.67	0.745			3	2	1	14.048	14.048	2;3;4	1.0551E-61	4315	DP1061-13	191.48	159.15			1.0693	1.0754	6.7581	6	0	Median	929420000	445960000	483460000	1793	67	1661	3697;3698;3699;3700;3701;3702	8664;8665;8666;8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678;8679;8680;8681;8682;8683;8684	8670		21	9606
TVAIYSEQDTGQMHR	0	1	Oxidation (M)	1750.7944	0.79444726	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.89	1.2	1	3	2	2	1	14.166	14.166	2;3	1.0907999999999998E-28	3470	DP1061-12	144.7	118.72			0.92509	0.95108	27.024	9	0	Median	609150000	308530000	300630000	1794	89	1662	3703;3704;3705;3706;3707;3708;3709;3710;3711	8685;8686;8687;8688;8689;8690;8691;8692;8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703;8704;8705;8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725	8697	135	41	9606
TVAIYSEQDTGQMHR	0	1	Unmodified	1734.7995	0.79953264	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.88	1.05		4	2	1	1	14.985	14.985	2;3	1.1163E-90	4275	DP1061-12	215.5	215.5			0.92661	0.94676	14.402	5	0	Median	228990000	116990000	112000000	1795	89	1662	3712;3713;3714;3715;3716;3717;3718;3719	8726;8727;8728;8729;8730;8731;8732;8733;8734;8735;8736;8737;8738;8739;8740;8741;8742;8743;8744;8745;8746;8747;8748;8749;8750	8731		25	9606
TVALWDLR	0	1	Unmodified	972.53927	0.53926584	281;330	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	3.5	0.5			1	1		19.922	19.922	2	0.03124	10100	DP1061-14	94.114	33.355			NaN	NaN	NaN	0	0	Median	20840000	0	20840000	1796	281;330	1663	3720;3721	8751;8752;8753;8754;8755	8755		5	9606
TVAQSQQLETNSQR	0	1	Unmodified	1588.7805	0.78051176	153	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		12.955	12.955	2	2.348E-16	3140	DP1061-14	172.13	114.58			NaN	NaN	NaN	0	0	Median	2799200	0	2799200	1797	153	1664	3722	8756;8757;8758	8756		3	9606
TVDATGKEIELTHR	1	1	Unmodified	1568.8158	0.81583463	38	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	1	4	0				1		13.854	13.854	3	0.028192	4097	DP1061-14	73.722	31.691			NaN	NaN	NaN	0	0	Median	0	0	0	1798	38	1665	3723	8759	8759		1	9606
TVDFTQDSNYLLTGGQDK	1	0	Unmodified	2000.9327	0.93271488	452	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				1		19.945	19.945	2	0.00047694	10071	DP1061-14	111.3	56.649			NaN	NaN	NaN	0	0	Median	3573100	0	3573100	1799	452	1666	3724	8760	8760		1	9606
TVEGVLIVHEHR	0	1	Unmodified	1387.7572	0.75719754	40	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	5	0					2	14.537	14.537	2;3	0.00074461	4676	DP1061-15	78.903	78.903			2.9501	2.7709	NaN	1	0	Median	31599000	8274900	23324000	1800	40	1667	3725;3726	8761;8762;8763;8764;8765	8764		5	9606
TVELSIPADPANLDSEAK	1	0	Unmodified	1868.9367	0.93673763	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.26	2	1	1	2		19.488	19.488	2;3	6.5138E-33	9448	DP1061-12	148.62	148.62			0.76462	0.7918	6.2301	5	0	Median	581620000	327660000	253960000	1801	287	1668	3727;3728;3729;3730;3731;3732	8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783;8784;8785;8786;8787;8788;8789;8790;8791;8792	8782		27	9606
TVESEAASYLDQISR	0	1	Unmodified	1667.8002	0.80024414	204	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		20.868	20.868	2	1.3171E-31	11143	DP1061-14	206.36	155.56			NaN	NaN	NaN	0	0	Median	15425000	0	15425000	1802	204	1669	3733	8793	8793		1	9606
TVEVAVPADPANLDSEAK	1	0	Unmodified	1824.9105	0.91052288	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.053	18.053	2	6.4627E-24	6564	DP1061-11	135.58	135.58			1.0817	1.1515	NaN	1	0	Median	5220400	2068400	3152100	1803	26	1670	3734	8794;8795	8794		2	9606
TVFAEHISDECKR	1	1	Unmodified	1590.746	0.7460405	149	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				1		13.908	13.908	3	0.045246	4272	DP1061-14	61.11	29.436			NaN	NaN	NaN	0	0	Median	2312700	0	2312700	1804	149	1671	3735	8796	8796		1	9606
TVGALQVLGTEAQSSLLK	1	0	Unmodified	1814.0149	0.014928368	260	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.34	21.34	2	4.9908E-48	9919	DP1061-11	214.61	191.83			NaN	NaN	NaN	0	0	Median	1345600	0	1345600	1805	260	1672	3736	8797;8798;8799	8798		3	9606
TVGIVGNQPK	1	0	Unmodified	1011.5713	0.57129425	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		13.753	13.753	1;2	1.1757E-16	3726	DP1061-13	143.73	143.73			0.97003	0.99895	6.0932	4	0	Median	518770000	255430000	263340000	1806	68	1673	3737;3738;3739;3740	8800;8801;8802;8803;8804;8805;8806;8807;8808;8809;8810	8806		10	9606
TVLDPVTGDLSDTR	0	1	Unmodified	1487.7468	0.74675201	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.5	0.5	2	2				18.571	18.571	2	9.8614E-09	6687	DP1061-11	139.32	105.91			NaN	NaN	NaN	0	0	Median	29701000	0	29701000	1807	321	1674	3741;3742;3743;3744	8811;8812;8813;8814	8811		4	9606
TVPEELVKPEELSK	2	0	Unmodified	1596.8611	0.86105349	436	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	1	3	0			1			16.605	16.605	3	0.0026959	6978	DP1061-13	97.631	60.205			NaN	NaN	NaN	0	0	Median	13681000	0	13681000	1808	436	1675	3745	8815;8816	8815		2	9606
TVTAMDVVYALK	1	0	Oxidation (M)	1325.6901	0.69008876	231	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	5	0					1	18.946	18.946	2	1.5826E-16	9143	DP1061-15	130.66	130.66			1.4386	1.2851	NaN	1	0	Median	33243000	13458000	19785000	1809	231	1676	3746	8817;8818;8819;8820	8820	244	4	9606
TVTAMDVVYALK	1	0	Unmodified	1309.6952	0.69517413	231	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	20.753	20.753	2	0.00027552	11073	DP1061-15	90.108	53.713			1.5222	1.3598	NaN	1	0	Median	11999000	4488500	7511000	1810	231	1676	3747	8821	8821		1	9606
TVTAMDVVYALKR	1	1	Oxidation (M)	1481.7912	0.79119978	231	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	17.923	17.923	2;3	0.00014891	7936	DP1061-15	85.522	73.356			1.5197	1.4596	NaN	1	0	Median	38351000	14169000	24183000	1811	231	1677	3748;3749	8822;8823;8824;8825;8826	8825	244	5	9606
TVTAMDVVYALKR	1	1	Unmodified	1465.7963	0.79628516	231	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.368	19.368	3	3.8149E-08	9632	DP1061-15	107.09	107.09			1.6727	1.6066	NaN	1	0	Median	13165000	5421900	7742900	1812	231	1677	3750	8827;8828	8827		2	9606
TVTNAVVTVPAYFNDSQR	0	1	Unmodified	1980.9905	0.99050453	88	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.421	19.421	2	2.8025999999999998E-43	10251	DP1061-13	157.52	157.52			4.8299	4.9283	NaN	1	0	Median	63829000	10269000	53561000	1813	88	1678	3751	8829;8830;8831	8831		3	9606
TVYGGGCSEMLMAHAVTQLANR	0	1	2 Oxidation (M)	2397.0875	0.087534513	259	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	2	0	3	0			2			16.815	16.815	3	0.027505	7239	DP1061-13	54.668	28.324			NaN	NaN	NaN	0	0	Median	0	0	0	1814	259	1679	3752;3753	8832;8833	8833	263;264	2	9606
TYADYESVNECMEGVCK	1	0	Oxidation (M)	2069.8016	0.80164241	263	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	1	0	5	0					1	16.211	16.211	2	0.043347	6302	DP1061-15	82.202	72.665			NaN	NaN	NaN	0	0	Median	0	0	0	1815	263	1680	3754	8834	8834		1	9606
TYGEPESAGPSR	0	1	Unmodified	1249.5575	0.55749468	180	P50402	EMD	Emerin	yes	yes	0	0	0	4	0				1		13.18	13.18	2	0.0049826	3386	DP1061-14	74.533	51.214			1.3945	1.4248	NaN	1	0	Median	3897100	1716000	2181200	1816	180	1681	3755	8835;8836;8837	8835		3	9606
TYMDVMR	0	1	2 Oxidation (M)	946.38884	0.38883813	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	2	0	2	0		1				12.466	12.466	2	0.0091309	2206	DP1061-12	74.415	64.109			49.865	54.053	NaN	1	0	Median	73570000	1577700	71993000	1817	46	1682	3756	8838;8839	8839	58;59	2	9606
TYQAIKDFNR	1	1	Unmodified	1254.6357	0.63568542	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.2	1.17	2	1	1	1		14.904	14.904	2;3	7.6606E-12	3918	DP1061-11	135.55	108.86			0.97444	1.0299	24.77	5	0	Median	94264000	46506000	47758000	1818	287	1683	3757;3758;3759;3760;3761	8840;8841;8842;8843;8844;8845;8846;8847;8848;8849	8843		10	9606
TYSYLTPDLWK	1	0	Unmodified	1385.6867	0.68671794	97	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				4		20.854	20.854	2	0.0022185	11088	DP1061-14	134.25	100.87			NaN	NaN	NaN	0	0	Median	5208500	5208500	0	1819	97	1684	3762;3763;3764;3765	8850;8851;8852;8853;8854	8851		5	9606
VAAETQSPSLFGSTK	1	0	Unmodified	1521.7675	0.76748745	433	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	3	0			2			16.659	16.659	2	0.0010861	7058	DP1061-13	105.25	66.502			NaN	NaN	NaN	0	0	Median	4641700	0	4641700	1820	433	1685	3766;3767	8855;8856	8855		2	9606
VADEMDVMLGQEVGYSIR	0	1	2 Oxidation (M)	2042.9289	0.92889183	33	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	2	0	5	0					1	15.798	15.798	3	0.043974	5886	DP1061-15	49.343	24.921			NaN	NaN	NaN	0	0	Median	0	0	0	1821	33	1686	3768	8857	8857		1	9606
VAEDEAEAAAAAK	1	0	Unmodified	1244.5885	0.58846046	80	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	3	0			2			13.62	13.62	2	0.018286	3855	DP1061-13	80.916	25.853			NaN	NaN	NaN	0	0	Median	2259900	0	2259900	1822	80	1687	3769;3770	8858;8859	8858		2	9606
VAEIEHAEKEK	2	0	Unmodified	1281.6565	0.65648044	259	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	3	0			1			12.403	12.403	3	0.038081	2486	DP1061-13	75.416	34.534			NaN	NaN	NaN	0	0	Median	13801000	0	13801000	1823	259	1688	3771	8860	8860		1	9606
VAGINACGR	0	1	Unmodified	916.45488	0.45488428	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	4	0				1		12.981	12.981	2	0.019103	3231	DP1061-14	111.65	70.87			NaN	NaN	NaN	0	0	Median	2331900	0	2331900	1824	185	1689	3772	8861;8862	8861		2	9606
VAISNPPQR	0	1	Unmodified	980.54033	0.54032847	314	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				13.479	13.479	2	0.051182	2716	DP1061-12	64.567	33.955			1.0403	1.1276	NaN	1	0	Median	41881000	21450000	20432000	1825	314	1690	3773	8863	8863		1	9606
VAKENNVDAVHPGYGFLSER	1	1	Unmodified	2201.0865	0.086530182	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				16.665	16.665	4	0.027382	5580	DP1061-12	39.364	39.364			0.75502	0.79024	NaN	1	0	Median	21326000	9907600	11418000	1826	89	1691	3774	8864;8865;8866	8865		3	9606
VANVSLLALYK	1	0	Unmodified	1189.7071	0.70705945	216	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	19.848	19.848	2	1.2892E-08	10096	DP1061-15	123.35	96.913			1.2276	1.0967	NaN	1	0	Median	18051000	7473800	10577000	1827	216	1692	3775	8867;8868;8869;8870	8868		4	9606
VAPAPAVVK	1	0	Unmodified	850.52764	0.52763852	226	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		13.112	13.112	2	0.00028635	3324	DP1061-14	110.34	52.526			1.445	1.3801	NaN	1	0	Median	11033000	4370700	6662800	1828	226	1693	3776	8871;8872;8873;8874	8872		4	9606
VAPEEHPVLLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	199;249	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		17.476	17.476	3	0.00093138	7437	DP1061-14	68.845	10.384			1.1203	1.07	NaN	1	0	Median	16269000	8145600	8123500	1829	199;249	1694	3777	8875;8876;8877	8876		3	9606
VAPSKWEAVDESELEAQAVTTSK	2	0	Unmodified	2474.2177	0.21766351	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	1	2	0		1				18.529	18.529	3	0.020708	7426	DP1061-12	73.11	46.098			NaN	NaN	NaN	0	0	Median	7610700	0	7610700	1830	28	1695	3778	8878	8878		1	9606
VAQLEQVYIR	0	1	Unmodified	1217.6768	0.67682195	224	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	17.348	17.348	2	3.1671E-27	7392	DP1061-15	166.3	116.58			3.3487	3.1453	NaN	1	0	Median	33939000	8250700	25689000	1831	224	1696	3779	8879;8880;8881;8882	8879		4	9606
VAQYVVR	0	1	Unmodified	833.47594	0.4759373	311	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	0	1	0	1					13.987	13.987	2	0.03736	3250	DP1061-11	87.582	22.319			NaN	NaN	NaN	0	0	Median	1344200	0	1344200	1832	311	1697	3780	8883	8883		1	9606
VASGCLDINSSVK	1	0	Unmodified	1348.6657	0.66566492	68	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.2	0.4			4	1		15.996	15.996	2	1.3389E-07	5601	DP1061-14	111.27	81.491			0.99163	1.0212	11.634	3	0	Median	195970000	93979000	102000000	1833	68	1698	3781;3782;3783;3784;3785	8884;8885;8886;8887;8888;8889;8890;8891;8892;8893;8894;8895	8895		11	9606
VASSPVMVSNPATR	0	1	Oxidation (M)	1430.7188	0.71876312	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	1	0	2	0		1				14.84	14.84	2	0.0010148	4144	DP1061-12	103.91	74.142			NaN	NaN	NaN	0	0	Median	6544300	0	6544300	1834	185	1699	3786	8896;8897	8897	199	2	9606
VATVSLPR	0	1	Unmodified	841.50215	0.50215205	5	CON__P00761			yes	yes	0	0	0	3.11	1.15	5	7	18	10	6	24.673	24.673	2	9.724E-08	16325	DP1061-13	147.69	49.275		+	NaN	NaN	NaN	0	0	Median	37997000000	37997000000	0	1835	5	1700	3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832	8898;8899;8900;8901;8902;8903;8904;8905;8906;8907;8908;8909;8910;8911;8912;8913;8914;8915;8916;8917;8918;8919;8920;8921;8922;8923;8924;8925;8926;8927;8928;8929;8930;8931;8932;8933;8934;8935;8936;8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974;8975;8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996;8997;8998;8999;9000;9001;9002;9003;9004;9005;9006;9007;9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026;9027	8970		130	
VATWFNQPAR	0	1	Unmodified	1188.604	0.60399136	124	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4.5	0.5				1	1	17.66	17.66	2	0.01186	7825	DP1061-15	116.73	74.127			1.9208	1.9626	NaN	1	0	Median	11033000	2241700	8791700	1836	124	1701	3833;3834	9028;9029;9030	9030		3	9606
VCTLAIIDPGDSDIIR	0	1	Unmodified	1756.9029	0.90293508	238	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	20.849	20.849	2	1.6444E-09	11157	DP1061-15	107.85	84.242			1.6432	1.5434	NaN	1	0	Median	8671500	2867800	5803700	1837	238	1702	3835	9031;9032;9033;9034;9035	9032		5	9606
VDALMDEINFMK	1	0	2 Oxidation (M)	1456.6578	0.65780235	19	CON__Q922U2;CON__Q5XQN5			no	no	0	2	0	5	0					1	18.352	18.352	2	0.050639	8544	DP1061-15	55.461	22.233		+	NaN	NaN	NaN	0	0	Median	0	0	0	1838	19	1703	3836	9036	9036		1	
VDIGLDQSLSMPDDSYMVDYFK	1	0	2 Oxidation (M)	2569.124	0.1240224	29	O15118	NPC1	Niemann-Pick C1 protein	yes	yes	0	2	0	3	0			1			19.841	19.841	2	0.025143	10846	DP1061-13	60.345	39.099			NaN	NaN	NaN	0	0	Median	0	0	0	1839	29	1704	3837	9037	9037	30;31	1	9606
VDLLNQEIEFLK	1	0	Unmodified	1459.7922	0.79224564	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.58	1	1		1	1	22.199	22.199	2	7.0838E-18	12474	DP1061-15	182.16	118.94		+	NaN	NaN	NaN	0	0	Median	43547000	43547000	0	1840	17	1705	3838;3839;3840;3841	9038;9039;9040;9041;9042;9043;9044;9045;9046	9045		9	9606
VDNDENEHQLSLR	0	1	Unmodified	1567.7227	0.72266253	74	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				3		14.155	14.155	2;3	4.725E-05	4334	DP1061-14	118.61	89.843			NaN	NaN	NaN	0	0	Median	13456000	0	13456000	1841	74	1706	3842;3843;3844	9047;9048;9049;9050	9048		4	9606
VDNSSLTGESEPQTR	0	1	Unmodified	1618.7435	0.74345755	65	P13637;P50993;P05023;P20648	ATP1A3;ATP1A2;ATP1A1;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1	yes	no	0	0	0	2	0		2				14.204	14.204	2	0.0011917	3589	DP1061-12	104.24	66.819			NaN	NaN	NaN	0	0	Median	1915700	0	1915700	1842	65	1707	3845;3846	9051;9052;9053	9053		3	9606
VDPEIQNVK	1	0	Unmodified	1040.5502	0.55022446	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	5	0					1	14.077	14.077	2	0.00031335	4364	DP1061-15	153.04	100.1		+	NaN	NaN	NaN	0	0	Median	38881000	38881000	0	1843	17	1708	3847	9054;9055	9054		2	9606
VDPVYIHLAER	0	1	Unmodified	1310.6983	0.69828568	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	2	1	1	1		17.248	17.248	2;3	2.164E-05	5807	DP1061-11	105.98	61.598			0.87323	0.8871	10.784	5	0	Median	152010000	75705000	76302000	1844	287	1709	3848;3849;3850;3851;3852	9056;9057;9058;9059;9060;9061;9062;9063;9064;9065;9066	9060		11	9606
VDSGIQPGSDISIYYDPMISK	1	0	Oxidation (M)	2300.0882	0.088229245	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		20.335	20.335	2;3	1.0011E-36	12023	DP1061-13	144.4	144.4			1.1662	1.1138	34.364	3	0	Median	301340000	145750000	155590000	1845	67	1710	3853;3854;3855	9067;9068;9069;9070;9071;9072;9073;9074;9075;9076;9077;9078	9072	81	12	9606
VDSGIQPGSDISIYYDPMISK	1	0	Unmodified	2284.0933	0.093314623	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.397	21.397	2	5.6844E-27	12741	DP1061-13	138.01	138.01			0.94629	0.9745	NaN	1	0	Median	76671000	39433000	37238000	1846	67	1710	3856	9079;9080;9081;9082;9083;9084	9081		6	9606
VDVGGSEPASLSYLSFEGATK	1	0	Unmodified	2113.0215	0.021529888	421	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	0	4	0				1		20.657	20.657	2	2.1424E-24	10819	DP1061-14	165.34	126.57			NaN	NaN	NaN	0	0	Median	3309800	0	3309800	1847	421	1711	3857	9085;9086	9086		2	9606
VDVTYPAGFMDVISIEK	1	0	Oxidation (M)	1898.9336	0.9335665	113	P22090	RPS4Y1	40S ribosomal protein S4, Y isoform 1	yes	yes	0	1	0	2	0		1				23.628	23.628	2	0.042371	13404	DP1061-12	46.985	13.986			0.93441	0.98179	NaN	1	0	Median	64709000	34946000	29763000	1848	113	1712	3858	9087	9087	152	1	9606
VDWQENDFSK	1	0	Unmodified	1266.5517	0.55168102	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.15	3	1	1	1		18.833	18.833	2	1.2178E-12	5784	DP1061-11	134.77	120.76			0.96591	1.0089	9.2816	4	0	Linear	266230000	137120000	129110000	1849	287	1713	3859;3860;3861;3862;3863;3864	9088;9089;9090;9091;9092;9093;9094;9095;9096;9097;9098;9099;9100;9101;9102	9091		14	9606
VDWQENDFSKR	1	1	Unmodified	1422.6528	0.65279205	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.67	1.25	1		1	1		16.008	16.008	2;3	0.0007631	6268	DP1061-13	77.744	39.749			0.85541	0.87659	13.206	3	0	Median	38719000	17924000	20794000	1850	287	1714	3865;3866;3867	9103;9104;9105;9106;9107	9106		3	9606
VEEAEPEEFVVEK	1	0	Unmodified	1532.7246	0.72461959	291	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	17.265	17.265	2	0.0037462	7409	DP1061-15	92.611	47.013			NaN	NaN	NaN	0	0	Median	3870500	0	3870500	1851	291	1715	3868	9108;9109	9109		2	9606
VEEQEPELTSTPNFVVEVIK	1	0	Unmodified	2286.1631	0.16310875	277	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				2		21.495	21.495	2;3	4.4402E-92	11736	DP1061-14	199.38	199.38			4.3988	4.2013	NaN	1	0	Median	18493000	3963200	14530000	1852	277	1716	3869;3870	9110;9111;9112;9113;9114;9115;9116;9117	9114		8	9606
VEGPGSLGLEESGSR	0	1	Unmodified	1472.7107	0.71070086	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	3.17	1.21	1		3	1	1	16.459	16.459	2	3.9493E-12	7757	DP1061-13	157.03	100.3			NaN	NaN	NaN	0	0	Median	197150000	0	197150000	1853	285	1717	3871;3872;3873;3874;3875;3876	9118;9119;9120;9121;9122;9123;9124;9125;9126;9127;9128;9129;9130	9123		13	9606
VEGPGSLGLEESGSRR	0	2	Unmodified	1628.8118	0.81181188	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0.816			1	1	1	15.164	15.164	2;3	0.0069031	5220	DP1061-14	87.083	41.699			NaN	NaN	NaN	0	0	Median	110540000	0	110540000	1854	285	1718	3877;3878;3879	9131;9132;9133;9134	9133		4	9606
VEGRPGASLPPLDLQALEK	1	1	Unmodified	1989.0895	0.089490294	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.5	0.764		4	1	1		21.316	21.316	3	4.3667E-08	9446	DP1061-12	106.31	95.762			0.67928	0.69795	9.9206	4	0	Median	330060000	192440000	137620000	1855	89	1719	3880;3881;3882;3883;3884;3885	9135;9136;9137;9138;9139;9140;9141;9142;9143;9144;9145;9146;9147;9148	9139		14	9606
VEGRPGASLPPLDLQALEKELVDR	1	2	Unmodified	2601.4126	0.41261535	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	2	2	0		1				21.833	21.833	4	8.8747E-09	11116	DP1061-12	97.352	83.46			0.65733	0.70029	NaN	1	0	Median	16368000	8811600	7556700	1856	89	1720	3886	9149;9150	9150		2	9606
VEGTEPTTAFNLFVGNLNFNK	1	0	Unmodified	2311.1485	0.14846174	108	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				23.58	23.58	2	1.5831E-92	13143	DP1061-12	203.87	203.87			0.69462	0.72984	NaN	1	0	Median	7892600	4962700	2929900	1857	108	1721	3887	9151;9152;9153	9152		3	9606
VEILANDQGNR	0	1	Unmodified	1227.6208	0.62076364	101	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	4.17	0.687			1	3	2	14.304	14.304	2	5.379099999999999E-21	4548	DP1061-13	155.58	0			3.7533	3.8229	30.609	2	0	Median	296370000	51213000	245150000	1858	101	1722	3888;3889;3890;3891;3892;3893	9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169;9170	9154		17	9606
VEITPESILSALSK	1	0	Unmodified	1485.829	0.82902508	344	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		1				23.835	23.835	2	1.0528E-09	13408	DP1061-12	151.13	103.94			NaN	NaN	NaN	0	0	Median	4349200	0	4349200	1859	344	1723	3894	9171;9172	9172		2	9606
VELADTSSDTLR	0	1	Unmodified	1305.6412	0.64122431	465				yes	yes	0	0	0	3	0			1			21.223	21.223	2	0.0080371	12566	DP1061-13	69.423	30.402	+		1.1114	1.1372	NaN	1	0	Median	27693000	12729000	14964000	1860	465	1724	3895	9173;9174	9174		2	9606
VEQLGAEGNVEESQK	1	0	Unmodified	1615.7689	0.76894402	448	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	4	0				2		14.338	14.338	2	0.0016018	4560	DP1061-14	102.4	60.064			NaN	NaN	NaN	0	0	Median	0	0	0	1861	448	1725	3896;3897	9175;9176	9175		2	9606
VEQTETPEMMEAR	0	1	2 Oxidation (M)	1581.6651	0.66507257	193	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	2	0	2	0		1				12.537	12.537	2	0.016129	2303	DP1061-12	91.549	63.345			NaN	NaN	NaN	0	0	Median	4781200	0	4781200	1862	193	1726	3898	9177	9177	220;221	1	9606
VETQFQNGHYDK	1	0	Unmodified	1464.6634	0.66335673	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.6	0.49	2	3				13.433	13.433	2;3	2.5633999999999998E-23	2690	DP1061-11	151.15	151.15			0.96826	1.024	4.5359	4	0	Median	199150000	99797000	99349000	1863	287	1727	3899;3900;3901;3902;3903	9178;9179;9180;9181;9182;9183;9184;9185;9186;9187;9188;9189;9190;9191;9192;9193	9185		16	9606
VETQTEELKQNESR	1	1	Unmodified	1689.817	0.81695684	345	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	1	2	0		1				12.608	12.608	3	0.0070156	2349	DP1061-12	90.731	64.019			NaN	NaN	NaN	0	0	Median	2386700	0	2386700	1864	345	1728	3904	9194	9194		1	9606
VEVGTEVTDYR	0	1	Unmodified	1266.6092	0.6091959	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.12	0.331	7	1				21.144	21.144	1;2	8.3444E-28	5397	DP1061-11	167.12	126.09			0.9833	1.0707	9.8719	7	0	Median	629680000	315530000	314160000	1865	287	1729	3905;3906;3907;3908;3909;3910;3911;3912	9195;9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206;9207;9208;9209;9210;9211;9212;9213;9214;9215;9216;9217;9218;9219;9220;9221;9222;9223;9224;9225;9226	9196		32	9606
VFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSR	0	1	2 Oxidation (M)	4088.9347	0.93471208	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	0	2	0		1				25.596	25.596	3	6.6307E-13	15470	DP1061-12	83.619	83.619			0.67734	0.73421	NaN	1	0	Median	4728300	2577800	2150500	1866	89	1730	3913	9227;9228;9229;9230;9231;9232;9233;9234;9235	9234	136;137	9	9606
VFIGNLNTLVVK	1	0	Unmodified	1315.7864	0.7863724	79	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		20.22	20.22	2	7.4399E-23	10335	DP1061-14	142.43	142.43			1.9202	1.834	NaN	1	0	Median	16914000	5949100	10965000	1867	79	1731	3914	9236;9237;9238;9239	9238		4	9606
VFLENVIR	0	1	Unmodified	988.57057	0.57056597	231	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	18.642	18.642	2	2.3819E-10	8783	DP1061-15	138.85	80.681			1.5662	1.4711	NaN	1	0	Median	160180000	63999000	96180000	1868	231	1732	3915	9240;9241;9242;9243	9243		4	9606
VFLIDLNSTHGTFLGHIR	0	1	Unmodified	2039.0952	0.095244374	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	3	0			1			20.281	20.281	3	0.0061026	11434	DP1061-13	91.932	59.007			NaN	NaN	NaN	0	0	Median	5270600	0	5270600	1869	285	1733	3916	9244;9245	9244		2	9606
VFQFLNAK	1	0	Unmodified	965.53345	0.53345218	261	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	18.35	18.35	2	0.00017078	8501	DP1061-15	114.02	56.464			1.6959	1.515	NaN	1	0	Median	14245000	5636700	8608200	1870	261	1734	3917	9246;9247	9246		2	9606
VGAAEIISR	0	1	Unmodified	914.51853	0.5185304	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2.5	0.5		1	1			15.242	15.242	2	0.013622	4452	DP1061-12	127.56	64			NaN	NaN	NaN	0	0	Median	81090000	0	81090000	1871	46	1735	3918;3919	9248;9249;9250;9251	9248		4	9606
VGEPVALSEEER	0	1	Unmodified	1313.6463	0.64630969	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2	0		1				15.715	15.715	2	0.012197	4946	DP1061-12	84.198	48.687			NaN	NaN	NaN	0	0	Median	7537700	0	7537700	1872	296	1736	3920	9252;9253	9253		2	9606
VGEPVALSEEERLK	1	1	Unmodified	1554.8253	0.82533668	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	1	2	0		1				16.098	16.098	2	0.010158	5163	DP1061-12	107.34	65.655			NaN	NaN	NaN	0	0	Median	0	0	0	1873	296	1737	3921	9254	9254		1	9606
VGEVTYVELLMDAEGK	1	0	Oxidation (M)	1767.8601	0.86006721	188	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			21.972	21.972	2	1.0932E-10	13473	DP1061-13	114.24	114.24			1.1837	1.219	NaN	1	0	Median	31042000	14245000	16797000	1874	188	1738	3922	9255;9256;9257	9255	217	3	9606
VGGTSDVEVNEK	1	0	Unmodified	1232.5885	0.58846046	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			12.888	12.888	2	0.038168	3098	DP1061-13	72.848	33.543			NaN	NaN	NaN	0	0	Median	0	0	0	1875	86	1739	3923	9258	9258		1	9606
VGINYQPPTVVPGGDLAK	1	0	Unmodified	1823.9781	0.97814893	252;400	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		19.039	19.039	2	8.087900000000001E-24	9746	DP1061-13	133.88	133.88			1.1336	1.1242	7.1287	2	0	Median	153160000	68643000	84518000	1876	252;400	1740	3924;3925	9259;9260;9261;9262;9263;9264;9265;9266;9267	9262		9	9606
VGLTNYAAAYCTGLLLAR	0	1	Unmodified	1926.0033	0.003317824	163	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				2		21.921	21.921	2	0.0074992	12202	DP1061-14	95.651	65.315			NaN	NaN	NaN	0	0	Median	2274500	0	2274500	1877	163	1741	3926;3927	9268;9269;9270	9268		3	9606
VHAALVYHK	1	0	Unmodified	1036.5818	0.58179936	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	3.33	0.471			2	1		13.407	13.407	2	6.7356E-05	2521	DP1061-14	154.09	121.74			NaN	NaN	NaN	0	0	Median	480630000	0	480630000	1878	285	1742	3928;3929;3930	9271;9272;9273;9274;9275	9274		5	9606
VHELNEEIGK	1	0	Unmodified	1166.5932	0.5931519	448	Q9Y383;Q9NQ29	LUC7L2;LUC7L	Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1	yes	no	0	0	0	4	0				1		13.337	13.337	2	0.012455	3610	DP1061-14	90.601	47.518			NaN	NaN	NaN	0	0	Median	1180400	0	1180400	1879	448	1743	3931	9276;9277	9277		2	9606
VHIEIGPDGR	0	1	Unmodified	1091.5724	0.57235688	192;134	P52597;P31943;P55795	HNRNPF;HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	3	0			1			14.876	14.876	2	0.0027301	5139	DP1061-13	89.698	89.698			1.6293	1.6682	NaN	1	0	Median	22712000	8266400	14446000	1880	192;134	1744	3932	9278;9279	9279		2	9606
VHIGQVIMSIR	0	1	Oxidation (M)	1267.7071	0.70707622	126	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	1	0	5	0					1	16.839	16.839	3	0.002316	6900	DP1061-15	68.786	68.786			1.7813	1.6731	NaN	1	0	Median	15133000	6168400	8964300	1881	126	1745	3933	9280;9281	9281	169	2	9606
VHNEGLPAPIVR	0	1	Unmodified	1300.7252	0.72516913	4	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3	0			1			15.273	15.273	2	0.04713	5591	DP1061-13	74.165	37.718		+	NaN	NaN	NaN	0	0	Median	0	0	0	1882	4	1746	3934	9282	9282		1	
VHPAVVIR	0	1	Unmodified	889.54977	0.54977095	232	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	12.943	12.943	2	0.046508	3349	DP1061-15	71.949	71.949			1.2547	1.1785	NaN	1	0	Median	7076900	3253000	3823900	1883	232	1747	3935	9283	9283		1	9606
VHTVVASNNGSVFSVEVDGSK	1	0	Unmodified	2131.0546	0.054561351	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.721	17.721	3	0.0067844	8353	DP1061-13	84.66	60.807			NaN	NaN	NaN	0	0	Median	16985000	0	16985000	1884	67	1748	3936	9284	9284		1	9606
VIAHGKDHPTAATK	2	0	Unmodified	1444.7787	0.77866126	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				12.386	12.386	3	5.5702E-38	2058	DP1061-12	157.33	123.29			0.84339	0.86273	NaN	1	0	Median	199030000	109720000	89315000	1885	89	1749	3937	9285;9286;9287;9288	9287		4	9606
VIECSYTSADGQR	0	1	Unmodified	1484.6566	0.6565568	431	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		14.3	14.3	2	1.9585E-16	4498	DP1061-14	129.89	111.62			1.5437	1.5772	NaN	1	0	Median	4564300	1817700	2746500	1886	431	1750	3938	9289;9290;9291;9292	9291		4	9606
VIGNQSLVNELAFTAR	0	1	Unmodified	1730.9315	0.93153309	286	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		20.561	20.561	2	6.0151E-49	10680	DP1061-14	169.23	169.23			0.91257	0.93241	NaN	1	0	Median	16496000	8757200	7738700	1887	286	1751	3939	9293;9294;9295;9296;9297	9294		5	9606
VINEEYK	1	0	Unmodified	893.44945	0.44944778	281;330	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	3	0			1			12.638	12.638	2	0.0032237	2775	DP1061-13	114.02	53.729			NaN	NaN	NaN	0	0	Median	41008000	0	41008000	1888	281;330	1752	3940	9298;9299	9299		2	9606
VINEPTAAALAYGLDK	1	0	Unmodified	1644.8723	0.87228688	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.607	19.607	2	0.00074219	10587	DP1061-13	80.3	60.064			1.7044	1.7552	NaN	1	0	Median	15428000	6417800	9010500	1889	146	1753	3941	9300;9301	9301		2	9606
VINQMLEFAFR	0	1	Oxidation (M)	1382.7017	0.70165649	331	Q9HBM6;Q16594	TAF9B;TAF9	Transcription initiation factor TFIID subunit 9B;Transcription initiation factor TFIID subunit 9	yes	no	0	1	0	4	0				1		19.768	19.768	2	0.031528	9916	DP1061-14	95.523	55.478			NaN	NaN	NaN	0	0	Median	0	0	0	1890	331	1754	3942	9302	9302	361	1	9606
VIQVENSHIILTGASALNK	1	0	Unmodified	2006.116	0.1160394	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.231	18.231	3	0.00079786	6826	DP1061-11	65.924	65.924			1.0255	1.0917	NaN	1	0	Median	4644300	2386000	2258300	1891	26	1755	3943	9303;9304	9304		2	9606
VIQVSPFLLALSGNSR	0	1	Unmodified	1699.9621	0.96210494	53	O95059	RPP14	Ribonuclease P protein subunit p14	yes	yes	0	0	0	5	0					1	22.857	22.857	2	6.24E-09	13141	DP1061-15	130.15	86.503			NaN	NaN	NaN	0	0	Median	2060500	0	2060500	1892	53	1756	3944	9305	9305		1	9606
VITEEEKNFK	2	0	Unmodified	1235.6398	0.63976774	124	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	4.5	0.5				1	1	13.263	13.263	3	1.9321E-08	3512	DP1061-14	116.52	116.52			1.5047	1.6042	9.8412	2	0	Median	8541100	3161400	5379600	1893	124	1757	3945;3946	9306;9307;9308;9309	9306		4	9606
VITIMQNPR	0	1	Oxidation (M)	1086.5856	0.5855641	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	1	0	5	0					1	14.164	14.164	2	3.5676E-05	4387	DP1061-15	113.89	80.997			1.1647	1.0939	NaN	1	0	Median	29668000	14961000	14706000	1894	217	1758	3947	9310;9311;9312;9313	9312	237	4	9606
VITIMQNPR	0	1	Unmodified	1070.5906	0.59064948	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					2	15.976	15.976	2	0.045456	6158	DP1061-15	74.127	39.955			NaN	NaN	NaN	0	0	Median	4862300	0	4862300	1895	217	1758	3948;3949	9314;9315	9314		2	9606
VIVSDVQESFIWVR	0	1	Unmodified	1675.8934	0.89335667	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				22.01	22.01	2	7.1599E-12	11285	DP1061-12	157.38	114.58			NaN	NaN	NaN	0	0	Median	6143400	0	6143400	1896	321	1759	3950	9316;9317	9317		2	9606
VKDMAAPGTSSVPAPTAGNAEK	2	0	Oxidation (M)	2114.0314	0.031383068	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	1	2	0		1				13.967	13.967	3	0.019263	3480	DP1061-12	62.999	30.659			NaN	NaN	NaN	0	0	Median	3214200	0	3214200	1897	352	1760	3951	9318	9318	373	1	9606
VKDWVER	1	1	Unmodified	930.49232	0.49231565	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				13.656	13.656	2	0.017926	2969	DP1061-11	101.33	101.33			0.90812	0.95602	4.262	2	0	Median	99841000	51517000	48324000	1898	287	1761	3952;3953	9319;9320	9319		1	9606
VKEGVEVTDHR	1	1	Unmodified	1267.6521	0.65206377	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.397	12.397	3	0.0015583	1874	DP1061-11	75.416	32.119			0.83377	0.88288	NaN	1	0	Median	7823600	4704500	3119100	1899	26	1762	3954	9321;9322	9321		2	9606
VKPYLPQICGTVLWR	1	1	Unmodified	1829.0022	0.002195612	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				20.401	20.401	3	1.1746E-05	9394	DP1061-12	116.58	102.01			NaN	NaN	NaN	0	0	Median	10638000	0	10638000	1900	46	1763	3955	9323	9323		1	9606
VLATVTKPVGGDK	2	0	Unmodified	1283.7449	0.74490152	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				2		13.11	13.11	2;3	0.0011148	3325	DP1061-14	73.877	33.862			1.682	1.8644	NaN	1	0	Median	7938000	2752100	5185900	1901	272	1764	3956;3957	9324;9325;9326	9325		3	9606
VLCAVSGPR	0	1	Unmodified	957.50659	0.5065855	341	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		14.018	14.018	2	0.031996	4194	DP1061-14	82.452	51.163			NaN	NaN	NaN	0	0	Median	3849300	0	3849300	1902	341	1765	3958	9327;9328	9327		2	9606
VLDELTLAR	0	1	Unmodified	1028.5866	0.58660996	6;13	P02533;CON__P02533;CON__P19012;CON__Q04695;Q04695;P19012;CON__A2A4G1;CON__Q6IFX2;CON__Q9QWL7;P08727;CON__P19001;CON__P08727;CON__P08779;P08779	KRT14;KRT17;KRT15;KRT19;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 16	no	no	0	0	0	4	0				1		17.965	17.965	2	0.018102	8109	DP1061-14	116.37	62.817		+	NaN	NaN	NaN	0	0	Median	4546100	4546100	0	1903	6;13	1766	3959	9329	9329		1	9606
VLDELTLTK	1	0	Unmodified	1030.591	0.59102664	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.33	1.7	1			1	1	17.579	17.579	2	0.015197	6175	DP1061-11	123.72	73.017		+	NaN	NaN	NaN	0	0	Median	63969000	63969000	0	1904	15	1767	3960;3961;3962	9330;9331;9332;9333;9334	9331		5	9606
VLEGNEQFINAAK	1	0	Unmodified	1431.7358	0.73579339	136	P35030	PRSS3	Trypsin-3	yes	yes	0	0	0	3.17	1.21	1		3	1	1	16.806	16.806	2	1.7662E-12	5412	DP1061-11	168.83	104.45			NaN	NaN	NaN	0	0	Median	18728000	18728000	0	1905	136	1768	3963;3964;3965;3966;3967;3968	9335;9336;9337;9338;9339;9340;9341;9342	9336		8	9606
VLELNASDER	0	1	Unmodified	1144.5724	0.57241646	137	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	4	0				1		15.352	15.352	2	0.016445	5506	DP1061-14	105.2	45.077			NaN	NaN	NaN	0	0	Median	0	0	0	1906	137	1769	3969	9343	9343		1	9606
VLENAEGAR	0	1	Unmodified	957.48796	0.48795855	146	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			12.448	12.448	2	0.0041459	2554	DP1061-13	95.909	65.743			1.7506	1.7868	NaN	1	0	Median	57618000	21096000	36523000	1907	146	1770	3970	9344;9345;9346;9347	9344		4	9606
VLEQLTGQTPVFSK	1	0	Unmodified	1545.8403	0.84025847	242	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	18.477	18.477	2	4.5621E-20	8598	DP1061-15	133.07	133.07			1.3365	1.1939	NaN	1	0	Median	25788000	10577000	15211000	1908	242	1771	3971	9348;9349;9350;9351	9350		4	9606
VLGTSPEAIDSAENR	0	1	Unmodified	1557.7635	0.76346471	128	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	2					16.104	16.104	2	0.0026223	4783	DP1061-11	99.5	66.769			NaN	NaN	NaN	0	0	Median	0	0	0	1909	128	1772	3972;3973	9352;9353	9353		2	9606
VLHEAEGHIVTCETNTGEVYR	0	1	Unmodified	2413.1332	0.13322238	224	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					2	15.109	15.109	3;4	0.0012595	5339	DP1061-15	87.228	69.17			NaN	NaN	NaN	0	0	Median	9219400	0	9219400	1910	224	1773	3974;3975	9354;9355	9355		2	9606
VLIANNGIAAVK	1	0	Unmodified	1181.7132	0.71320746	287;26	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	3	1.41	1	1	1	1	1	16.682	16.682	2	2.2483000000000003E-31	5759	DP1061-12	157.91	111.94			0.92721	0.97422	13.975	5	0	Median	266420000	137970000	128450000	1911	287;26	1774	3976;3977;3978;3979;3980	9356;9357;9358;9359;9360;9361;9362;9363;9364;9365;9366	9361		11	9606
VLLGETGK	1	0	Unmodified	815.47527	0.4752686	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	13.847	13.847	2	0.037569	4210	DP1061-15	74.255	24.897			1.8547	1.6569	NaN	1	0	Median	13334000	5234500	8099300	1912	220	1775	3981	9367	9367		1	9606
VLLGETGKEK	2	0	Unmodified	1072.6128	0.61282471	220	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	12.473	12.473	2	2.9115E-07	2804	DP1061-15	122.19	40.997			1.5611	1.6009	NaN	1	0	Median	14089000	5325000	8764400	1913	220	1776	3982	9368;9369;9370	9369		3	9606
VLLLSSPGLEELYR	0	1	Unmodified	1587.8872	0.88720866	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2.5	0.5		1	1			21.98	21.98	2	3.0983E-08	11248	DP1061-12	133.42	99.041			NaN	NaN	NaN	0	0	Median	24709000	0	24709000	1914	364	1777	3983;3984	9371;9372;9373;9374	9371		4	9606
VLNSYWVGEDSTYK	1	0	Unmodified	1659.7781	0.77805214	205	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	18.686	18.686	2	0.0011754	8873	DP1061-15	81.525	64.948			0.68015	0.60759	NaN	1	0	Median	9471000	4455100	5015800	1915	205	1778	3985	9375;9376;9377;9378	9376		4	9606
VLNTNIDGR	0	1	Unmodified	1000.5302	0.53015772	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	14.193	14.193	2	2.0291E-10	4347	DP1061-15	131.03	93.872			1.2087	1.1352	NaN	1	0	Median	24805000	10714000	14091000	1916	217	1779	3986	9379;9380;9381	9381		3	9606
VLQAELK	1	0	Unmodified	799.48035	0.48035398	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.236	14.236	2	0.029746	3285	DP1061-11	83.614	10.575			122.18	130.06	NaN	1	0	Median	134640000	1412000	133230000	1917	287	1780	3987	9382;9383;9384	9382		3	9606
VLQALEGLK	1	0	Unmodified	969.58588	0.58588168	148	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	17.491	17.491	2	0.031996	7667	DP1061-15	82.452	24.893			NaN	NaN	NaN	0	0	Median	2590800	0	2590800	1918	148	1781	3988	9385	9385		1	9606
VLQSALAAIR	0	1	Unmodified	1040.6342	0.63422886	284	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		17.411	17.411	2	0.036487	7416	DP1061-14	74.301	16.134			NaN	NaN	NaN	0	0	Median	4154700	0	4154700	1919	284	1782	3989	9386	9386		1	9606
VLSAPPHFHFGQTNR	0	1	Unmodified	1706.8641	0.86412223	125	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			16.082	16.082	4	0.021887	6455	DP1061-13	64.798	46.341			1.1799	1.2103	NaN	1	0	Median	12926000	6605500	6320900	1920	125	1783	3990	9387	9387		0	9606
VLSIGDGIAR	0	1	Unmodified	999.57129	0.57129425	122	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.112	17.112	2	0.00073915	7425	DP1061-13	99.136	40.321			1.0674	1.092	NaN	1	0	Median	29401000	15592000	13808000	1921	122	1784	3991	9388;9389;9390	9388		3	9606
VLTVINQTQK	1	0	Unmodified	1142.6659	0.66592292	159	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	5	0					1	14.794	14.794	2	5.9923E-05	4896	DP1061-15	105.4	82.077			0.90854	0.81162	NaN	1	0	Median	12592000	6516600	6075800	1922	159	1785	3992	9391;9392;9393;9394	9393		4	9606
VLVDSSFGQPTTQGEAR	0	1	Unmodified	1790.8799	0.87989145	282	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	1.5	0.5	1	1				17.141	17.141	2	9.0534E-10	5639	DP1061-11	135.58	76.884			NaN	NaN	NaN	0	0	Median	1568700	0	1568700	1923	282	1786	3993;3994	9395;9396;9397	9396		3	9606
VLVNDAQK	1	0	Unmodified	885.49198	0.4919813	292	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	2	0		1				12.416	12.416	2	0.050405	2209	DP1061-12	77.058	27.699			NaN	NaN	NaN	0	0	Median	29344000	0	29344000	1924	292	1787	3995	9398	9398		1	9606
VLYDAEISQIHQSVTDTNVILSMDNSR	0	1	Oxidation (M)	3063.4819	0.48189348	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	2.5	1.66	2		1		1	20.488	20.488	3	0.00019335	10688	DP1061-15	82.942	51.66		+	NaN	NaN	NaN	0	0	Median	37555000	37555000	0	1925	17	1788	3996;3997;3998;3999	9399;9400;9401;9402;9403;9404;9405;9406;9407	9404	10	9	9606
VLYSNMLGEENTYLWR	0	1	Oxidation (M)	2002.9459	0.94586252	265	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	4	0				1		20.598	20.598	2	3.1263E-05	10784	DP1061-14	116.71	74.158			NaN	NaN	NaN	0	0	Median	3230700	3230700	0	1926	265	1789	4000	9408;9409	9409	270	2	9606
VMQQQQQTTQQQLPQK	1	0	Oxidation (M)	1956.9687	0.96872323	328	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2.67	0.471		1	2			12.91	12.91	2	1.0458E-12	3028	DP1061-13	151.79	109.04			NaN	NaN	NaN	0	0	Median	2723100	0	2723100	1927	328	1790	4001;4002;4003	9410;9411;9412;9413	9413	359	4	9606
VNNADDFPNLFR	0	1	Unmodified	1420.6735	0.67352749	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			20.339	20.339	2	1.4549999999999999E-67	8831	DP1061-11	205.59	205.59			0.85259	0.86611	6.0143	3	0	Plateau	103660000	56301000	47358000	1928	287	1791	4004;4005;4006	9414;9415;9416;9417;9418;9419;9420;9421;9422;9423	9414		10	9606
VNTLIRPDGEK	1	1	Unmodified	1240.6776	0.67755023	229	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	13.527	13.527	3	0.04705	3904	DP1061-15	69.721	35.854			NaN	NaN	NaN	0	0	Median	0	0	0	1929	229	1792	4007	9424	9424		1	9606
VPEIEVTVEGPNNNNPQTSAVR	0	1	Unmodified	2363.1717	0.17171637	258	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		3				17.977	17.977	2	6.044199999999999E-59	6870	DP1061-12	204.43	132.87			NaN	NaN	NaN	0	0	Median	0	0	0	1930	258	1793	4008;4009;4010	9425;9426;9427	9426		3	9606
VPPAINQFTQALDR	0	1	Unmodified	1568.8311	0.83109076	226	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		20.091	20.091	2	6.6003E-09	10242	DP1061-14	110.39	86.298			1.6116	1.6467	NaN	1	0	Median	8795700	3248800	5546900	1931	226	1794	4011	9428;9429;9430	9429		3	9606
VPPPWLIAMQR	0	1	Unmodified	1306.722	0.72199801	296	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2	0		1				21.493	21.493	2	0.049642	10709	DP1061-12	70.919	24.922			NaN	NaN	NaN	0	0	Median	4090100	0	4090100	1932	296	1795	4012	9431	9431		1	9606
VPTANVSVVDLTCR	0	1	Unmodified	1529.7872	0.78717704	61	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.244	18.244	2	1.6371E-06	8302	DP1061-14	122.55	77.386			NaN	NaN	NaN	0	0	Median	3236100	3236100	0	1933	61	1796	4013	9432;9433;9434;9435;9436	9436		5	9606
VQAERPDTMLGVVCGALHVADVSLR	0	2	Oxidation (M)	2708.3738	0.37380377	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	3	3				19.858	19.858	3;4	7.1348E-09	8624	DP1061-11	95.624	95.624			0.85626	0.87613	4.0786	4	0	Median	97175000	61098000	36077000	1934	287	1797	4014;4015;4016;4017;4018;4019	9437;9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451;9452;9453;9454	9439	315	18	9606
VQALEEANNDLENK	1	0	Unmodified	1585.7584	0.75837933	16	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				15.998	15.998	2	3.0139E-07	4579	DP1061-11	126.66	100.59		+	NaN	NaN	NaN	0	0	Median	3045600	3045600	0	1935	16	1798	4020;4021	9455;9456;9457	9456		3	9606
VQAQVIQETIVPK	1	0	Unmodified	1451.8348	0.83477916	328	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				17.397	17.397	2	0.028546	6300	DP1061-12	75.566	31.796			NaN	NaN	NaN	0	0	Median	5584200	0	5584200	1936	328	1799	4022	9458	9458		1	9606
VQDDEVGDGTTSVTVLAAELLR	0	1	Unmodified	2287.1543	0.15433498	259	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			23.932	23.932	2	6.8844E-07	15800	DP1061-13	122.5	83.079			NaN	NaN	NaN	0	0	Median	3062000	0	3062000	1937	259	1800	4023	9459;9460;9461	9459		3	9606
VQENCIDLVGR	0	1	Unmodified	1301.6398	0.63978452	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		3				16.732	16.732	2	1.1597E-09	5608	DP1061-12	168.83	73.326			NaN	NaN	NaN	0	0	Median	40229000	0	40229000	1938	46	1801	4024;4025;4026	9462;9463;9464;9465;9466	9463		5	9606
VQIAVANAQELLQR	0	1	Unmodified	1551.8733	0.87328993	459	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	5	0					1	19.2	19.2	2	4.5118E-09	9368	DP1061-15	141.08	68.989			NaN	NaN	NaN	0	0	Median	30600000	0	30600000	1939	459	1802	4027	9467;9468	9468		2	9606
VQQAELHTGSLPR	0	1	Unmodified	1434.7579	0.75792582	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.33	3	3	1	1	1	15.169	15.169	2;3	6.9002E-24	4207	DP1061-11	142.83	142.83			0.84973	0.87759	19.216	8	0	Plateau	1092500000	586610000	505860000	1940	287	1803	4028;4029;4030;4031;4032;4033;4034;4035;4036	9469;9470;9471;9472;9473;9474;9475;9476;9477;9478;9479;9480;9481;9482;9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493;9494;9495;9496;9497;9498;9499;9500;9501;9502;9503;9504;9505;9506;9507;9508;9509;9510	9475		42	9606
VQTLSNQPLLK	1	0	Unmodified	1239.7187	0.71868677	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				16.456	16.456	2	0.0048521	5432	DP1061-12	98.033	63.501			NaN	NaN	NaN	0	0	Median	5273500	0	5273500	1941	364	1804	4037	9511	9511		1	9606
VQVSYKGETK	2	0	Unmodified	1137.603	0.60298831	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			12.433	12.433	2	0.0095094	2499	DP1061-13	72.325	39.326			4.1548	4.1934	NaN	1	0	Median	27756000	5594300	22162000	1942	85	1805	4038	9512	9512		0	9606
VRQQAADLISR	0	2	Unmodified	1255.6997	0.69968266	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				14.005	14.005	2	0.036841	3388	DP1061-12	92.239	24.342			NaN	NaN	NaN	0	0	Median	3357000	0	3357000	1943	46	1806	4039	9513	9513		1	9606
VSALNSVHCEHVEDEGESR	0	1	Unmodified	2152.9444	0.94435897	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.63	0.741	10	6	3			14.742	14.742	2;3;4	4.1582000000000003E-119	3107	DP1061-11	224.67	224.67			0.97646	1.0341	8.555	11	0	Median	1041799999.9999999	531840000	510000000	1944	287	1807	4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058	9514;9515;9516;9517;9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528;9529;9530;9531;9532;9533;9534;9535;9536;9537;9538;9539;9540;9541;9542;9543;9544;9545;9546;9547;9548;9549;9550;9551;9552;9553;9554;9555;9556;9557;9558;9559;9560;9561;9562;9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574	9517		60	9606
VSALNSVHCEHVEDEGESRYK	1	1	Unmodified	2444.1027	0.10265053	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.197	14.197	4	3.5231E-13	3308	DP1061-11	106.57	88.275			1.0324	1.0932	NaN	1	0	Median	5850500	2564900	3285600	1945	287	1808	4059	9575;9576;9577;9578;9579	9575		5	9606
VSGVECMIIANDATVK	1	0	Oxidation (M)	1721.8328	0.8328066	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	4	0.816			1	1	1	17.597	17.597	2	3.5355E-10	7116	DP1061-14	111.12	80.573			0.92647	0.91883	21.178	2	0	Median	36333000	15390000	20943000	1946	417	1809	4060;4061;4062	9580;9581;9582;9583;9584;9585;9586;9587	9583	432	8	9606
VSGVECMIIANDATVK	1	0	Unmodified	1705.8379	0.83789198	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		18.961	18.961	2	3.7661E-06	9563	DP1061-13	117.07	85.887			1.0179	1.0483	NaN	1	0	Median	134890000	63703000	71183000	1947	417	1809	4063;4064;4065	9588;9589;9590;9591;9592;9593	9589		6	9606
VSISEGDDKIEYR	1	1	Unmodified	1509.7311	0.73110195	112	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		15.465	15.465	3	7.8979E-24	5548	DP1061-14	142.83	118.58			1.7004	1.7152	NaN	1	0	Median	16129000	6278000	9851000	1948	112	1810	4066	9594;9595	9595		2	9606
VSLDVNHFAPDELTVK	1	0	Unmodified	1782.9152	0.91521432	63	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	18.841	18.841	3	2.1848E-10	9055	DP1061-15	110.97	110.97			1.0725	0.95806	NaN	1	0	Median	6683800	3655900	3027900	1949	63	1811	4067	9596;9597	9597		2	9606
VSLFQNCFELTPAFSQLTAR	0	1	Unmodified	2328.1573	0.15725228	43	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	2	0		1				23.571	23.571	2	0.0084745	13150	DP1061-12	82.102	35.621			NaN	NaN	NaN	0	0	Median	0	0	0	1950	43	1812	4068	9598	9598		1	9606
VSVINTVDTSHEDMIHDAQMDYYGTR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	3070.3284	0.3284293	196	P55735	SEC13	Protein SEC13 homolog	yes	yes	1	2	0	4	0				1		19.342	19.342	3	0.013318	9468	DP1061-14	56.131	38.03			NaN	NaN	NaN	0	0	Median	2860300	0	2860300	1951	196	1813	4069	9599	9599	223;224	1	9606
VTDALNATR	0	1	Unmodified	959.50361	0.50360861	86	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			13.227	13.227	2	0.032493	3436	DP1061-13	70.816	28.707			1.2867	1.3183	NaN	1	0	Median	11080000	4733800	6345800	1952	86	1814	4070	9600	9600		1	9606
VTDETSGCSLTCAQFHPDGLIFGTGTMDSQIK	1	0	Oxidation (M)	3488.5534	0.55342022	436	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	1	0	3	0			1			20.259	20.259	3	0.003862	11388	DP1061-13	52.234	35.568			NaN	NaN	NaN	0	0	Median	10766000	0	10766000	1953	436	1815	4071	9601	9601	443	1	9606
VTEDTSSVLR	0	1	Unmodified	1105.5615	0.56151742	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.2	1.33	1		2	1	1	14.713	14.713	2	2.6122E-37	4643	DP1061-13	180.87	180.87			1.0904	1.1065	13.448	3	0	Plateau	379260000	182540000	196720000	1954	67	1816	4072;4073;4074;4075;4076	9602;9603;9604;9605;9606;9607;9608;9609;9610;9611;9612;9613;9614;9615;9616;9617;9618	9603		17	9606
VTEETVYTCTGHPLK	1	0	Unmodified	1733.8294	0.82943578	152	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	4	0				1		14.836	14.836	3	0.015051	5072	DP1061-14	79.771	52.192			NaN	NaN	NaN	0	0	Median	1673100	0	1673100	1955	152	1817	4077	9619;9620	9619		2	9606
VTFSEDDEIINPEDVDPSVGR	0	1	Unmodified	2332.0707	0.070664925	285	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	3.1	0.712	1	2	20	5	1	26.845	26.845	2;3	6.6585E-99	16298	DP1061-13	249.58	225.07			72.89	73.749	NaN	1	0	Median	1065599999.9999999	10421000	1055199999.9999999	1956	285	1818	4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;4103;4104;4105;4106	9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636;9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653;9654;9655;9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669;9670;9671;9672;9673;9674	9636		54	9606
VTGEADVEFATHEEAVAAMSK	1	0	Oxidation (M)	2207.0052	0.005227897	192	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	3	0			1			17.373	17.373	3	0.044161	7743	DP1061-13	49.528	25.119			NaN	NaN	NaN	0	0	Median	11989000	0	11989000	1957	192	1819	4107	9675	9675		1	9606
VTGPQATTGTPLVTMRPASQAGK	1	1	Oxidation (M)	2284.1845	0.18452967	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	1	1	2	0		1				14.946	14.946	3	0.010124	4262	DP1061-12	69.088	41.817			NaN	NaN	NaN	0	0	Median	0	0	0	1958	185	1820	4108	9676	9676	200	1	9606
VTIAQGGVLPNIQAVLLPK	1	0	Unmodified	1930.1615	0.16153303	64;84	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	no	no	0	0	0	4.67	0.471				1	2	22.611	22.611	2;3	3.4829000000000005E-45	12908	DP1061-15	166.9	166.9			1.2691	1.1337	0.68734	2	0	Median	98483000	40668000	57815000	1959	64;84	1821	4109;4110;4111	9677;9678;9679;9680;9681;9682;9683;9684;9685;9686	9686		10	9606
VTMQNLNDR	0	1	Oxidation (M)	1105.5186	0.51860675	15;6;13	P02533;CON__P02533;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8	KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	no	no	0	1	0	3.2	1.6	1	1	1		2	12.42	12.42	2	0.0076119	1905	DP1061-11	140.35	90.935		+	NaN	NaN	NaN	0	0	Median	115810000	115810000	0	1960	6;13;15	1822	4112;4113;4114;4115;4116	9687;9688;9689;9690;9691;9692;9693	9687	3	7	9606
VTMQNLNDR	0	1	Unmodified	1089.5237	0.52369213	15;6;13	P02533;CON__P02533;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8	KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	no	no	0	0	0	3.33	1.7	1			1	1	14.275	14.275	2	0.010046	4372	DP1061-15	132.08	60.742		+	NaN	NaN	NaN	0	0	Median	31106000	31106000	0	1961	6;13;15	1822	4117;4118;4119	9694;9695;9696;9697	9696		4	9606
VTNLSEDTR	0	1	Unmodified	1033.504	0.50400254	49	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	4	0				1		12.666	12.666	2	0.0027054	2877	DP1061-14	98.582	45.231			1.2013	1.2274	NaN	1	0	Median	2932900	1360800	1572100	1962	49	1823	4120	9698;9699;9700	9699		3	9606
VTQDELKEVFEDAAEIR	1	1	Unmodified	1990.9848	0.98475045	108	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0			1			21.49	21.49	3	0.00017823	13004	DP1061-13	77.027	50.298			2.6963	2.7638	NaN	1	0	Median	8244200	2608500	5635700	1963	108	1824	4121	9701	9701		1	9606
VTSVVFHPSQDLVFSASPDATIR	0	1	Unmodified	2472.2649	0.26488848	436	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	3	0			1			19.885	19.885	3	1.0408E-07	10878	DP1061-13	116.04	85.832			NaN	NaN	NaN	0	0	Median	11436000	0	11436000	1964	436	1825	4122	9702;9703	9702		2	9606
VTWDGHSGSMAR	0	1	Oxidation (M)	1318.5724	0.57243324	328	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				13.117	13.117	3	0.035014	2743	DP1061-12	42.976	30.4			2.7522	2.9833	NaN	1	0	Median	4827700	1237100	3590500	1965	328	1826	4123	9704;9705	9704	360	2	9606
VVALSMSPVDDTFISGSLDK	1	0	Oxidation (M)	2096.0347	0.034737111	350	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		20.497	20.497	2	8.1093E-16	10619	DP1061-14	147.51	112.61			NaN	NaN	NaN	0	0	Median	9459800	0	9459800	1966	350	1827	4124	9706;9707	9706	370	2	9606
VVALSMSPVDDTFISGSLDK	1	0	Unmodified	2080.0398	0.039822489	350	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		21.779	21.779	2	1.5961E-23	12097	DP1061-14	157.23	110.35			NaN	NaN	NaN	0	0	Median	1672100	0	1672100	1967	350	1827	4125	9708;9709;9710;9711	9711		4	9606
VVEEAPSIFLDAETR	0	1	Unmodified	1674.8465	0.84646606	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.94	0.524	1		16	1		24.178	24.178	2;3	6.3304E-49	11095	DP1061-13	178.71	178.71			0.91586	0.92963	7.8892	6	0	Median	353380000	190340000	163030000	1968	67	1828	4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143	9712;9713;9714;9715;9716;9717;9718;9719;9720;9721;9722;9723;9724;9725;9726;9727;9728;9729;9730;9731;9732;9733;9734;9735;9736;9737;9738;9739;9740;9741;9742;9743;9744;9745;9746;9747;9748;9749;9750;9751	9717		40	9606
VVEEAPSIFLDAETRR	0	2	Unmodified	1830.9476	0.94757708	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.12	0.331			7	1		21.177	21.177	2;3	3.4543E-39	9222	DP1061-13	160.69	160.69			1.0036	0.99798	7.3662	5	0	Median	314540000	151870000	162670000	1969	67	1829	4144;4145;4146;4147;4148;4149;4150;4151	9752;9753;9754;9755;9756;9757;9758;9759;9760;9761;9762;9763;9764;9765;9766;9767;9768;9769;9770;9771	9754		20	9606
VVEGTPLIDGR	0	1	Unmodified	1154.6295	0.62953741	310	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	2.67	1.25	1		1	1		16.304	16.304	2	8.1072E-05	5002	DP1061-11	153.05	95.495			NaN	NaN	NaN	0	0	Median	14007000	0	14007000	1970	310	1830	4152;4153;4154	9772;9773;9774;9775;9776	9773		5	9606
VVEIAPAAHLDPQLR	0	1	Unmodified	1627.9046	0.90459006	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.7	0.9	1	3	4	2		17.754	17.754	2;3	3.3769E-28	6309	DP1061-12	136.53	136.53			0.76803	0.79347	29.057	6	0	Median	633110000	345250000	287860000	1971	89	1831	4155;4156;4157;4158;4159;4160;4161;4162;4163;4164	9777;9778;9779;9780;9781;9782;9783;9784;9785;9786;9787;9788;9789;9790;9791;9792;9793;9794;9795;9796;9797;9798;9799;9800;9801;9802;9803;9804	9790		27	9606
VVGWSGPVPR	0	1	Unmodified	1052.5767	0.57671398	185	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	2	0		1				17.397	17.397	2	0.017644	6397	DP1061-12	84.743	48.186			NaN	NaN	NaN	0	0	Median	10147000	0	10147000	1972	185	1832	4165	9805	9805		1	9606
VVHSYEELEENYTR	0	1	Unmodified	1766.8111	0.81114318	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.53	1.02	1	9	2	2	1	17.126	17.126	2;3	8.584999999999999E-91	5572	DP1061-12	218.07	218.07			0.95306	1.0063	3.926	7	0	Median	870660000	458330000	412320000	1973	89	1833	4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177;4178;4179;4180	9806;9807;9808;9809;9810;9811;9812;9813;9814;9815;9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826;9827;9828;9829;9830;9831;9832;9833;9834;9835;9836;9837;9838;9839;9840;9841;9842;9843;9844;9845;9846;9847;9848;9849;9850;9851;9852	9820		47	9606
VVLVLAGR	0	1	Unmodified	825.54362	0.54362294	206	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	16.974	16.974	2	0.017318	7014	DP1061-15	86.086	59.978			1.8475	1.7353	NaN	1	0	Median	16107000	6181700	9925600	1974	206	1834	4181	9853;9854;9855	9854		3	9606
VVNGAAASQPPSK	1	0	Unmodified	1224.6463	0.64625011	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				12.408	12.408	2	2.1621E-06	2139	DP1061-12	141.1	101.09			NaN	NaN	NaN	0	0	Median	0	0	0	1975	46	1835	4182	9856	9856		1	9606
VVQGDIGEANEDVTQIVEILHSGPSK	1	0	Unmodified	2733.3821	0.38210308	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				22.16	22.16	3	2.7033E-06	11426	DP1061-12	112.61	70.489			NaN	NaN	NaN	0	0	Median	17490000	0	17490000	1976	359	1836	4183	9857;9858	9857		2	9606
VVSNDDGSISYESR	0	1	Unmodified	1526.6849	0.68488004	1	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	2.33	0.943	1		2			14.823	14.823	2	3.5406E-05	5101	DP1061-13	113.38	84.802			NaN	NaN	NaN	0	0	Median	3745300	0	3745300	1977	1	1837	4184;4185;4186	9859;9860;9861	9860		3	9606
VVTATLWGEDADKFDGSR	1	1	Unmodified	1965.9432	0.94321999	127	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	1	3	0			1			18.881	18.881	3	0.010551	9627	DP1061-13	82.259	50.107			NaN	NaN	NaN	0	0	Median	0	0	0	1978	127	1838	4187	9862	9862		1	9606
VVTQNICQYR	0	1	Unmodified	1279.6343	0.63430521	364	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				15.24	15.24	2	0.011436	4413	DP1061-12	112.84	76.148			NaN	NaN	NaN	0	0	Median	13586000	0	13586000	1979	364	1839	4188	9863;9864	9864		2	9606
VVTVVTTK	1	0	Unmodified	845.52222	0.52221879	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				13.247	13.247	2	0.046775	2815	DP1061-12	79.713	35.596			NaN	NaN	NaN	0	0	Median	7896000	0	7896000	1980	352	1840	4189	9865	9865		1	9606
VVVQVLAEEPEAVLK	1	0	Unmodified	1621.9291	0.92907347	171	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					20.218	20.218	2	0.0015479	8714	DP1061-11	101.47	65.815			NaN	NaN	NaN	0	0	Median	1627400	0	1627400	1981	171	1841	4190	9866	9866		1	9606
VVYASATGASEPR	0	1	Unmodified	1306.6517	0.65172941	1	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	2.25	0.433		3	1			13.922	13.922	2	0.0048793	3628	DP1061-12	92.611	62.293			NaN	NaN	NaN	0	0	Median	3837200	0	3837200	1982	1	1842	4191;4192;4193;4194	9867;9868;9869;9870;9871	9868		5	9606
VWDDGIIDPADTR	0	1	Unmodified	1471.6943	0.69432251	417	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.12	0.331			7	1		26.432	26.432	2	1.0723E-67	10347	DP1061-13	203.02	187.02			0.85547	0.87185	3.4168	6	0	Median	406740000	210320000	196430000	1983	417	1843	4195;4196;4197;4198;4199;4200;4201;4202	9872;9873;9874;9875;9876;9877;9878;9879;9880;9881;9882;9883;9884;9885;9886;9887	9875		16	9606
VYAEDPYK	1	0	Unmodified	983.46001	0.46001246	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			14.378	14.378	1	2.3893E-10	4841	DP1061-13	132.57	93.761			0.90025	0.92709	NaN	1	0	Median	6636300	3425700	3210600	1984	67	1844	4203	9888;9889	9889		2	9606
VYKTLFALCILTAGWR	1	1	Acetyl (Protein N-term)	1953.0546	0.054625113	349	Q6UWI2	PARM1	Prostate androgen-regulated mucin-like protein 1	yes	yes	1	0	1	3	0			7			25.057	25.057	2;3	0.0007598	17747	DP1061-13	102.4	56.023			NaN	NaN	NaN	0	0	Median	0	0	0	1985	349	1845	4204;4205;4206;4207;4208;4209;4210	9890;9891;9892;9893;9894;9895;9896	9894		7	9606
VYNVTQHAVGIVVNK	1	0	Unmodified	1639.9046	0.90459006	164	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					2	16.305	16.305	2;3	1.7074E-09	6344	DP1061-15	104.9	104.9			1.697	1.516	NaN	1	0	Median	14918000	5036300	9881700	1986	164	1846	4211;4212	9897;9898;9899;9900;9901	9899		5	9606
VYNYNHLMPTR	0	1	Oxidation (M)	1422.6714	0.671419	206	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	5	0					1	14.35	14.35	3	0.005877	4505	DP1061-15	60.255	44.334			1.4751	1.3855	NaN	1	0	Median	7244700	3063900	4180800	1987	206	1847	4213	9902;9903;9904	9903	230	3	9606
WDETPASQMGGSTPVLTPGK	1	0	Oxidation (M)	2073.9677	0.96772018	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	0	2	0		1				17.406	17.406	2	1.2533E-05	6238	DP1061-12	114.64	73.161			NaN	NaN	NaN	0	0	Median	5491300	0	5491300	1988	46	1848	4214	9905;9906	9906	60	2	9606
WDQTADQTPGATPK	1	0	Unmodified	1514.7001	0.70013617	46	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	3	0.816		1	1	1		14.702	14.702	2	4.5234E-07	4527	DP1061-12	126.19	85.697			NaN	NaN	NaN	0	0	Median	19174000	0	19174000	1989	46	1849	4215;4216;4217	9907;9908;9909;9910;9911;9912;9913	9910		7	9606
WEAVDESELEAQAVTTSK	1	0	Unmodified	1991.9324	0.93238053	28	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				19.228	19.228	2	1.4664E-06	8159	DP1061-12	123.1	82.724			NaN	NaN	NaN	0	0	Median	0	0	0	1990	28	1850	4218	9914	9914		1	9606
WELLQQVDTSTR	0	1	Unmodified	1474.7416	0.74160705	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	0			1			19.718	19.718	2	0.00013305	10795	DP1061-13	126.39	75.936		+	NaN	NaN	NaN	0	0	Median	27321000	27321000	0	1991	60	1851	4219	9915	9915		1	9606
WGDYDSHDIER	0	1	Unmodified	1391.5742	0.57420737	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					15.772	15.772	3	0.016897	4460	DP1061-11	74.611	58.041			NaN	NaN	NaN	0	0	Median	3179500	0	3179500	1992	347	1852	4220	9916	9916		1	9606
WLSCETQLPVSFR	0	1	Unmodified	1621.7923	0.79226242	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					20.709	20.709	2	0.00058187	9281	DP1061-11	123.79	77.884			NaN	NaN	NaN	0	0	Median	0	0	0	1993	48	1853	4221	9917	9917		1	9606
WMLAGRPHPTQK	1	1	Oxidation (M)	1436.7347	0.73468796	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	1	1		1			13.678	13.678	3	0.01272	3086	DP1061-11	53.013	53.013			0.75429	0.78585	11.885	2	0	Median	63196000	34680000	28516000	1994	287	1854	4222;4223	9918;9919	9918	316	2	9606
WPNVSDIWSTYLTK	1	0	Unmodified	1708.8461	0.84607213	418	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	2	0		1				23.871	23.871	2	0.038228	13513	DP1061-12	72.531	32.516			NaN	NaN	NaN	0	0	Median	0	0	0	1995	418	1855	4224	9920	9920		1	9606
WQDIQNDPR	0	1	Unmodified	1170.5418	0.54178503	311	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	yes	no	0	0	0	1	0	1					15.139	15.139	2	0.033459	4071	DP1061-11	81.548	46.724			NaN	NaN	NaN	0	0	Median	1429500	0	1429500	1996	311	1856	4225	9921;9922	9921		2	9606
WQNNLLPSR	0	1	Unmodified	1126.5883	0.5883413	213	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	17.382	17.382	2	0.015109	7475	DP1061-15	79.713	47.952			1.1191	1.0512	NaN	1	0	Median	9644600	5059400	4585200	1997	213	1857	4226	9923;9924;9925;9926;9927	9924		5	9606
WQPDTEEEYEDSSGNVVNKK	2	0	Unmodified	2353.0346	0.03461377	283	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			1			15.977	15.977	3	0.00056911	6269	DP1061-13	101.92	75.686			NaN	NaN	NaN	0	0	Median	5641400	0	5641400	1998	283	1858	4227	9928;9929	9928		2	9606
WSYEMFR	0	1	Unmodified	1017.4378	0.43783723	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.774	19.774	2	4.6735E-06	8288	DP1061-11	123.99	72.952			1.0001	1.0392	NaN	1	0	Median	30465000	14950000	15515000	1999	287	1859	4228	9930;9931	9931		2	9606
WVTTASLLDYDTVAGADK	1	0	Unmodified	1924.9418	0.941823	321	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0.816	1	1	1			21.409	21.409	2	1.2161E-09	9964	DP1061-11	130.24	86.556			NaN	NaN	NaN	0	0	Median	14352000	0	14352000	2000	321	1860	4229;4230;4231	9932;9933;9934;9935;9936;9937;9938	9933		7	9606
YAASSYLSLTSSDWK	1	0	Unmodified	1677.7886	0.78861683	18	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	20.073	20.073	2	1.6316E-06	10417	DP1061-15	125.54	93.479		+	NaN	NaN	NaN	0	0	Median	5642600	5642600	0	2001	18	1861	4232	9939;9940	9940		2	
YAHVVLR	0	1	Unmodified	856.49192	0.49192172	217	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	13.231	13.231	2	0.013968	3589	DP1061-15	90.939	44.588			1.5122	1.4203	NaN	1	0	Median	6647200	2760400	3886800	2002	217	1862	4233	9941	9941		1	9606
YAQAGFEGFK	1	0	Unmodified	1116.524	0.52400971	48	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.206	17.206	2	0.015862	5775	DP1061-11	85.731	49.349			NaN	NaN	NaN	0	0	Median	2674100	0	2674100	2003	48	1863	4234	9942;9943	9943		2	9606
YASETLQAQSEEAR	0	1	Unmodified	1581.7271	0.7270792	435	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	yes	yes	0	0	0	4	0				1		14.5	14.5	2	2.929E-08	4705	DP1061-14	133.89	88.295			NaN	NaN	NaN	0	0	Median	1228300	0	1228300	2004	435	1864	4235	9944;9945;9946	9946		3	9606
YDAFLASESLIK	1	0	Unmodified	1355.6973	0.69728262	240	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	20.375	20.375	2	0.024069	10734	DP1061-15	77.662	40.113			NaN	NaN	NaN	0	0	Median	1336300	1336300	0	2005	240	1865	4236	9947	9947		1	9606
YDFTSSR	0	1	Unmodified	874.3821	0.38209649	427	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	4	0				1		14.819	14.819	2	7.7903E-06	5064	DP1061-14	120.65	108.21			1.5916	1.6263	NaN	1	0	Median	4085200	1510600	2574600	2006	427	1866	4237	9948	9948		1	9606
YDGIILPGK	1	0	Unmodified	974.54368	0.54368251	242	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	17.657	17.657	2	0.019654	7767	DP1061-15	75.109	41.106			1.323	1.1819	NaN	1	0	Median	23795000	10200000	13594000	2007	242	1867	4238	9949;9950	9950		2	9606
YDSAPATDGSGTALGWTVAWK	1	0	Unmodified	2153.0065	0.006548526	21	CON__Streptavidin			yes	yes	0	0	0	4.67	0.943	1	1		2	23	25.242	25.242	2;3	9.9481E-158	11742	DP1061-15	296.49	239.94		+	NaN	NaN	NaN	0	0	Median	2221700000	2221700000	0	2008	21	1868	4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250;4251;4252;4253;4254;4255;4256;4257;4258;4259;4260;4261;4262;4263;4264;4265	9951;9952;9953;9954;9955;9956;9957;9958;9959;9960;9961;9962;9963;9964;9965;9966;9967;9968;9969;9970;9971;9972;9973;9974;9975;9976;9977;9978;9979;9980;9981;9982;9983;9984;9985;9986;9987;9988;9989;9990	9958		40	
YEDFSNLGTTHLLR	0	1	Unmodified	1664.8158	0.81583463	115	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	3	0			1			18.51	18.51	3	0.00013193	9171	DP1061-13	85.271	66.633			1.0965	1.1217	NaN	1	0	Median	9112400	3536100	5576200	2009	115	1869	4266	9991	9991		1	9606
YEEELEINDFPQTAR	0	1	Unmodified	1852.8479	0.84792262	352	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2.33	1.25	1	1		1		19.273	19.273	2	9.0261E-17	8101	DP1061-12	174.57	134.65			NaN	NaN	NaN	0	0	Median	10977000	0	10977000	2010	352	1870	4267;4268;4269	9992;9993;9994;9995;9996;9997	9994		6	9606
YEELQITAGR	0	1	Unmodified	1178.5932	0.5931519	60	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	1.63	1		1		1	16.629	16.629	2	1.8376E-05	6493	DP1061-15	157.91	108.49		+	NaN	NaN	NaN	0	0	Median	82739000	82739000	0	2011	60	1871	4270;4271;4272	9998;9999;10000;10001;10002	10001		5	9606
YEELQQTAGR	0	1	Unmodified	1193.5677	0.56766543	19	CON__Q922U2;CON__Q5XQN5			no	no	0	0	0	3.33	1.7	1			1	1	13.908	13.908	2	0.0099968	4116	DP1061-15	128.38	82.665		+	NaN	NaN	NaN	0	0	Median	8306400	8306400	0	2012	19	1872	4273;4274;4275	10003;10004;10005;10006;10007	10006		5	
YEELQVTVGR	0	1	Unmodified	1192.6088	0.60880197	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	4.5	0.5				1	1	16.723	16.723	2	1.4363E-09	6693	DP1061-15	175.91	86.77		+	NaN	NaN	NaN	0	0	Median	25772000	25772000	0	2013	17	1873	4276;4277	10008;10009;10010	10010		3	9606
YENEVALR	0	1	Unmodified	992.49271	0.49270958	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	2	1				1	14.691	14.691	2	0.018495	4737	DP1061-15	111.82	65.39		+	NaN	NaN	NaN	0	0	Median	10054000	10054000	0	2014	15	1874	4278;4279	10011;10012;10013;10014	10014		4	9606
YFPTQALNFAFK	1	0	Unmodified	1445.7343	0.73433683	66;94;93	P05141;Q9H0C2;P12235;P12236	SLC25A5;SLC25A31;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		21.75	21.75	2	9.0171E-07	11957	DP1061-14	102.62	102.62			1.3022	1.2438	NaN	1	0	Median	34298000	13374000	20924000	2015	66;93;94	1875	4280	10015;10016;10017;10018;10019	10018		5	9606
YGDGGSTFQSTTGHCVHMR	0	1	Oxidation (M)	2112.8742	0.87417092	134	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3	0			1			13.28	13.28	3	0.00022704	3458	DP1061-13	72.583	59.415			1.1422	1.1673	NaN	1	0	Median	7989100	2874800	5114200	2016	134	1876	4281	10020;10021;10022;10023;10024	10020	172	5	9606
YGDSEFTVQSTTGHCVHMR	0	1	Oxidation (M)	2226.9423	0.94225048	192	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	3	0			1			14.574	14.574	3	0.026025	4914	DP1061-13	60.541	46.342			NaN	NaN	NaN	0	0	Median	2377000	0	2377000	2017	192	1877	4282	10025	10025	219	1	9606
YGEYFPGTGDLR	0	1	Unmodified	1373.6252	0.62518031	379	Q92769;Q13547	HDAC2;HDAC1	Histone deacetylase 2;Histone deacetylase 1	yes	no	0	0	0	3	0			1			18.678	18.678	2	0.026577	9338	DP1061-13	76.282	42.36			NaN	NaN	NaN	0	0	Median	14302000	0	14302000	2018	379	1878	4283	10026;10027	10027		2	9606
YGPLSGVNVVYDQR	0	1	Unmodified	1565.7838	0.78380622	300	Q13595	TRA2A	Transformer-2 protein homolog alpha	yes	yes	0	0	0	5	0					1	18.804	18.804	2	0.0049358	8993	DP1061-15	91.937	44.982			NaN	NaN	NaN	0	0	Median	1890700	0	1890700	2019	300	1879	4284	10028;10029	10028		2	9606
YGQFSGLNPGGR	0	1	Unmodified	1251.5996	0.59963426	210	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		16.772	16.772	2	0.0015875	6730	DP1061-14	98.044	53.695			NaN	NaN	NaN	0	0	Median	4892300	0	4892300	2020	210	1880	4285	10030;10031	10030		2	9606
YGVNPGPIVGTTR	0	1	Unmodified	1329.7041	0.70409934	156	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	4	0				1		16.598	16.598	2	0.049772	6651	DP1061-14	70.977	38.657			NaN	NaN	NaN	0	0	Median	3466800	0	3466800	2021	156	1881	4286	10032	10032		1	9606
YHSDEYIK	1	0	Unmodified	1053.4767	0.47672516	379	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	3	0			1			12.656	12.656	2	0.013951	2788	DP1061-13	124.59	90.591			NaN	NaN	NaN	0	0	Median	11117000	0	11117000	2022	379	1882	4287	10033;10034	10033		2	9606
YHTINGHNAEVR	0	1	Unmodified	1409.68	0.68000985	114	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		12.415	12.415	3	0.0030383	2569	DP1061-14	89.189	57.2			NaN	NaN	NaN	0	0	Median	7505700	0	7505700	2023	114	1883	4288	10035;10036	10035		2	9606
YHTVNGHNCEVR	0	1	Unmodified	1484.6579	0.6578942	82	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4	0				1		12.383	12.383	3	1.5986E-05	2525	DP1061-14	130.44	101.81			NaN	NaN	NaN	0	0	Median	0	0	0	2024	82	1884	4289	10037	10037		1	9606
YIAENGTDPINNQPLSEEQLIDIK	1	0	Unmodified	2713.3447	0.34465494	436	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	3	0			1			20.756	20.756	2	7.4018E-19	11963	DP1061-13	151.44	121.13			NaN	NaN	NaN	0	0	Median	8630900	0	8630900	2025	436	1885	4290	10038;10039	10038		2	9606
YICDNQDTISSK	1	0	Unmodified	1442.6348	0.63475872	11	CON__P02769			yes	yes	0	0	0	3	0			1			14.159	14.159	2	0.0045214	4460	DP1061-13	91.658	40.222		+	NaN	NaN	NaN	0	0	Median	6921500	6921500	0	2026	11	1886	4291	10040	10040		1	9606
YIDQEELNK	1	0	Unmodified	1150.5506	0.55061839	78	P07900;Q14568;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	3	0			1			14.561	14.561	2	0.0026798	4837	DP1061-13	98.629	62.296			1.536	1.5818	NaN	1	0	Median	13775000	4320100	9454700	2027	78	1887	4292	10041;10042	10042		2	9606
YIGEVGDIVVGR	0	1	Unmodified	1275.6823	0.68230126	304	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	4	0				1		18.868	18.868	2	0.00028573	8937	DP1061-14	112.75	84.052			NaN	NaN	NaN	0	0	Median	6114400	0	6114400	2028	304	1888	4293	10043;10044	10043		2	9606
YIQELWR	0	1	Unmodified	1006.5236	0.52361577	205	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	18.357	18.357	2	0.001314	8552	DP1061-15	104.11	104.11			1.6194	1.521	NaN	1	0	Median	10772000	3888700	6883000	2029	205	1889	4294	10045;10046;10047;10048	10048		4	9606
YIQPWESEFIDSQR	0	1	Unmodified	1796.837	0.836964	347	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					21.01	21.01	2	3.4907E-08	9525	DP1061-11	132.32	90.923			NaN	NaN	NaN	0	0	Median	1444600	0	1444600	2030	347	1890	4295	10049;10050	10050		2	9606
YIQQTKPLTLER	1	1	Unmodified	1488.83	0.83002813	40	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	1	5	0					1	14.965	14.965	3	0.001457	5039	DP1061-15	73.273	55.178			2.6813	2.5752	NaN	1	0	Median	24009000	6449900	17559000	2031	40	1891	4296	10051;10052	10052		2	9606
YISFEER	0	1	Unmodified	942.4447	0.44469675	307	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		16.199	16.199	2	0.0066485	6242	DP1061-14	97.602	67.098			1.0148	1.0369	NaN	1	0	Median	19889000	9421400	10467000	2032	307	1892	4297	10053;10054	10054		2	9606
YKAEDEVQRER	1	2	Unmodified	1421.6899	0.68990583	85	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			12.417	12.417	3	6.6183E-06	2463	DP1061-13	105.98	78.494			4.4882	4.6973	NaN	1	0	Median	60581000	13596000	46985000	2033	85	1893	4298	10055;10056	10055		2	9606
YKITDIIGKEEGIGPENLR	2	1	Unmodified	2144.1477	0.14773345	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1.5	0.5	1	1				19.167	19.167	3	0.013399	7752	DP1061-11	52.185	42.931			0.97281	1.0141	24.36	2	0	Median	23864000	15406000	8459000	2034	287	1894	4299;4300	10057;10058	10057		2	9606
YLANIEQQHGNSGR	0	1	Unmodified	1585.7597	0.75971673	433	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	3	0			2			13.701	13.701	2;3	2.5984E-07	3816	DP1061-13	126.1	93.165			NaN	NaN	NaN	0	0	Median	35235000	0	35235000	2035	433	1895	4301;4302	10059;10060;10061	10059		3	9606
YLDGLTAER	0	1	Unmodified	1036.5189	0.51892433	17	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3.33	1.7	1			1	1	16.594	16.594	2	0.021207	5194	DP1061-11	95.741	38.639		+	NaN	NaN	NaN	0	0	Median	41287000	41287000	0	2036	17	1896	4303;4304;4305	10062;10063;10064;10065	10063		4	9606
YLGGSMDLSTFDFR	0	1	Oxidation (M)	1623.7239	0.72390808	59	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	1	0	4	0				1		20.494	20.494	2	0.0057176	10636	DP1061-14	96.604	35.044			NaN	NaN	NaN	0	0	Median	2985900	0	2985900	2037	59	1897	4306	10066	10066	68	1	9606
YLGYLEQLLR	0	1	Unmodified	1266.6972	0.69722304	7	CON__P02662			yes	yes	0	0	0	3	0.816		1	1	1		22.521	22.521	2	0.009816	11914	DP1061-12	128.69	93.879		+	NaN	NaN	NaN	0	0	Median	18774000	18774000	0	2038	7	1898	4307;4308;4309	10067;10068;10069;10070;10071;10072	10067		6	
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Oxidation (M)	2496.2054	0.20538427	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.71	0.881			4	1	2	17.478	17.478	2;3	1.8959E-136	7858	DP1061-13	224.55	224.55			0.81415	0.83842	12.297	3	0	Median	221410000	126020000	95389000	2039	395	1899	4310;4311;4312;4313;4314;4315;4316	10073;10074;10075;10076;10077;10078;10079;10080;10081;10082;10083;10084;10085;10086;10087;10088;10089;10090;10091;10092;10093;10094;10095;10096	10074	417	24	9606
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Unmodified	2480.2105	0.21046965	395	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			19.043	19.043	2	3.776E-159	9712	DP1061-13	245.18	245.18			0.76605	0.78888	NaN	1	0	Median	37978000	20058000	17920000	2040	395	1899	4317	10097;10098;10099;10100;10101;10102;10103	10100		7	9606
YLTVAAIFR	0	1	Unmodified	1052.6019	0.6018661	305	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	3	0			1			20.918	20.918	2	0.020082	12209	DP1061-13	98.997	57.494			NaN	NaN	NaN	0	0	Median	3417100	0	3417100	2041	305	1900	4318	10104;10105	10105		2	9606
YLTVAAVFR	0	1	Unmodified	1038.5862	0.58621603	253;77	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	3	0			1			19.749	19.749	2	2.413E-06	10756	DP1061-13	116.88	81.992			1.6531	1.685	NaN	1	0	Median	88480000	32159000	56321000	2042	77;253	1901	4319	10106;10107	10107		2	9606
YLTVATVFR	0	1	Unmodified	1068.5968	0.59678072	297	Q13509	TUBB3	Tubulin beta-3 chain	no	no	0	0	0	3	0			1			19.422	19.422	2	0.036812	10382	DP1061-13	79.474	30.718			NaN	NaN	NaN	0	0	Median	3778900	0	3778900	2043	297	1902	4320	10108	10108		1	9606
YLVQDTDEFILPTGANK	1	0	Unmodified	1922.9626	0.96255845	27	Q5SRD1;O14925	TIMM23B;TIMM23	Putative mitochondrial import inner membrane translocase subunit Tim23B;Mitochondrial import inner membrane translocase subunit Tim23	yes	no	0	0	0	5	0					1	20.407	20.407	2	2.1777E-06	10786	DP1061-15	91.858	53.863			1.021	0.91211	NaN	1	0	Median	6074000	2429300	3644600	2044	27	1903	4321	10109;10110	10110		2	9606
YLVVLYYNANR	0	1	Unmodified	1386.7296	0.7295858	450	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	19.869	19.869	2	0.00045372	10109	DP1061-15	147.34	108.56			NaN	NaN	NaN	0	0	Median	24545000	0	24545000	2045	450	1904	4322	10111;10112	10111		2	9606
YLYLTPQDYK	1	0	Unmodified	1302.6496	0.64960415	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.632	1	3	1			19.035	19.035	2	5.7012E-49	7142	DP1061-11	194.9	149.56			0.88112	0.938	2.416	3	0	Median	334710000	167630000	167090000	2046	287	1905	4323;4324;4325;4326;4327	10113;10114;10115;10116;10117;10118;10119;10120;10121;10122;10123;10124	10115		11	9606
YLYLTPQDYKR	1	1	Unmodified	1458.7507	0.75071518	287	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	2	2				17.227	17.227	2;3	8.0489E-14	5715	DP1061-11	134.48	98.826			0.97014	1.0273	7.8204	3	0	Median	96569000	49930000	46639000	2047	287	1906	4328;4329;4330;4331	10125;10126;10127;10128;10129;10130;10131;10132;10133	10129		9	9606
YLYLTPQDYTR	0	1	Unmodified	1431.7034	0.70343063	26	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.304	19.304	2	1.6596E-08	7879	DP1061-11	121.73	92.775			0.94152	1.0181	NaN	1	0	Median	6823300	3786300	3036900	2048	26	1907	4332	10134;10135;10136;10137;10138	10138		5	9606
YMACCLLYR	0	1	Oxidation (M)	1264.5403	0.54027017	252;400	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	1	0	3	0			1			17.499	17.499	2	0.00016407	7939	DP1061-13	107.43	107.43			1.3424	1.3722	NaN	1	0	Median	37360000	16971000	20389000	2049	252;400	1908	4333	10139;10140;10141;10142	10139	258	4	9606
YMACCLLYR	0	1	Unmodified	1248.5454	0.54535555	252;400	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			18.415	18.415	2	0.0067697	9030	DP1061-13	91.041	76.367			1.5524	1.589	NaN	1	0	Median	24517000	10105000	14413000	2050	252;400	1908	4334	10143;10144;10145;10146	10145		4	9606
YMDAWNTVSR	0	1	Oxidation (M)	1257.5448	0.5448215	459	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	1	0	5	0					1	16.38	16.38	2	0.021432	6401	DP1061-15	128.6	93.246			NaN	NaN	NaN	0	0	Median	9509600	0	9509600	2051	459	1909	4335	10147	10147	458	1	9606
YMEVSGNLR	0	1	Oxidation (M)	1083.5019	0.50189405	283	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	1	0	3	0			1			14.047	14.047	2	0.0093598	4341	DP1061-13	73.248	34.457			2.369	2.4289	NaN	1	0	Median	15124000	5713100	9410900	2052	283	1910	4336	10148	10148	272	1	9606
YPENFFLLR	0	1	Unmodified	1197.6182	0.61824444	210;142;211	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		21.341	21.341	2	0.019133	11444	DP1061-14	110.81	53.997			NaN	NaN	NaN	0	0	Median	154660000	0	154660000	2053	142;210;211	1911	4337;4338	10149;10150;10151;10152;10153;10154	10151		6	9606
YPIEHGIITNWDDMEK	1	0	Oxidation (M)	1975.8986	0.89857798	228	P63267;P68133;P68032;P62736	ACTG2;ACTA1;ACTC1;ACTA2	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle	yes	no	0	1	0	4	0				1		17.753	17.753	3	0.00046041	7764	DP1061-14	73.983	73.983			1.5414	1.4722	NaN	1	0	Median	5992600	2257200	3735500	2054	228	1912	4339	10155;10156	10155	243	2	9606
YQAVTATLEEK	1	0	Unmodified	1251.6347	0.63468237	151	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	5	0					1	15.598	15.598	2	0.043805	5812	DP1061-15	58.592	16.716			1.2959	1.1576	NaN	1	0	Median	16734000	7244200	9489500	2055	151	1913	4340	10157	10157		1	9606
YRPGTVALR	0	2	Unmodified	1031.5876	0.58761301	255	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	no	no	0	0	1	5	0					2	13.579	13.579	3	0.01881	3978	DP1061-15	103.55	58.385			NaN	NaN	NaN	0	0	Median	0	0	0	2056	255	1914	4341;4342	10158;10159	10159		2	9606
YSLDPENPTK	1	0	Unmodified	1162.5506	0.55061839	106	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	15.813	15.813	2	0.0047556	5859	DP1061-15	83.998	48.553			1.0956	0.97872	NaN	1	0	Median	9146900	3672700	5474200	2057	106	1915	4343	10160;10161;10162;10163	10161		4	9606
YSLQSANASSLSSGQLK	1	0	Unmodified	1739.869	0.86899241	409	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				17.207	17.207	2	0.021962	6098	DP1061-12	76.262	44.228			NaN	NaN	NaN	0	0	Median	0	0	0	2058	409	1916	4344	10164	10164		1	9606
YSLQYYMGLAEELVR	0	1	Oxidation (M)	1849.892	0.89203604	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.17	0.373		5	1			22.986	22.986	2;3	2.5699E-61	12307	DP1061-12	188.15	188.15			0.89556	0.97076	2.4276	2	0	Median	118900000	62482000	56417000	2059	89	1917	4345;4346;4347;4348;4349;4350	10165;10166;10167;10168;10169;10170;10171	10166	138	7	9606
YSLQYYMGLAEELVR	0	1	Unmodified	1833.8971	0.89712142	89	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				25.18	25.18	2	3.2523E-20	14983	DP1061-12	130.56	103.81			0.95036	1.0302	NaN	1	0	Median	3747100	1631500	2115600	2060	89	1917	4351	10172;10173;10174	10174		3	9606
YSSAGTVEFLVDSK	1	0	Unmodified	1501.73	0.73003931	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.2	0.4			4	1		21.03	21.03	2	1.3764E-13	9956	DP1061-13	121.02	77.713			1.052	1.0834	NaN	1	0	Median	149040000	68344000	80693000	2061	67	1918	4352;4353;4354;4355;4356	10175;10176;10177;10178;10179;10180;10181;10182;10183;10184;10185	10178		11	9606
YSSAGTVEFLVDSKK	2	0	Unmodified	1629.825	0.82500233	67	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			2			17.605	17.605	2;3	1.3094E-14	8096	DP1061-13	125.47	125.47			0.76656	0.77368	14.468	2	0	Median	104330000	51241000	53091000	2062	67	1919	4357;4358	10186;10187;10188;10189;10190	10189		5	9606
YSVDIPLDK	1	0	Unmodified	1048.5441	0.54407645	206	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	17.694	17.694	2	0.017366	7816	DP1061-15	76.827	43.986			1.6254	1.452	NaN	1	0	Median	12345000	4426300	7918800	2063	206	1920	4359	10191;10192;10193	10191		3	9606
YSVQLLTPANLLAK	1	0	Unmodified	1529.8817	0.88172935	440	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			1			21.368	21.368	2	2.9846E-05	12842	DP1061-13	89.561	89.561			0.50996	0.52516	NaN	1	0	Median	16826000	9874800	6951600	2064	440	1921	4360	10194;10195	10195		2	9606
YTHAANTVVYSSNK	1	0	Unmodified	1553.7474	0.74742071	350	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				2		12.781	12.781	2;3	3.116E-09	2961	DP1061-14	145.14	106.39			NaN	NaN	NaN	0	0	Median	15592000	0	15592000	2065	350	1922	4361;4362	10196;10197;10198;10199	10199		4	9606
YTIHSQLEHLQSK	1	0	Unmodified	1582.8104	0.81035532	404	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	0	5	0					1	14.645	14.645	3	7.7411E-05	4765	DP1061-15	111.72	74.104			NaN	NaN	NaN	0	0	Median	8769500	0	8769500	2066	404	1923	4363	10200	10200		1	9606
YTPSQQGVAFNSGAK	1	0	Unmodified	1553.7474	0.74742071	298	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3	0			1			15.276	15.276	2	6.3827E-07	5523	DP1061-13	126.71	91.295			NaN	NaN	NaN	0	0	Median	10216000	0	10216000	2067	298	1924	4364	10201;10202	10201		2	9606
YVASYLLAALGGNSSPSAK	1	0	Unmodified	1867.968	0.96797818	70	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	21.715	21.715	2	0.0049286	12146	DP1061-15	97.797	41.393			NaN	NaN	NaN	0	0	Median	1954900	0	1954900	2068	70	1925	4365	10203;10204;10205	10203		3	9606
YVIYIER	0	1	Unmodified	954.51747	0.51746776	203	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	17.401	17.401	2	0.00084786	7503	DP1061-15	108.24	82.129			2.5835	2.4266	NaN	1	0	Median	17378000	5473200	11905000	2069	203	1926	4366	10206;10207	10206		2	9606
YYPTEDVPR	0	1	Unmodified	1138.5295	0.52948901	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		15.604	15.604	2	0.019345	5645	DP1061-14	75.213	50.991			2.2661	2.3154	NaN	1	0	Median	10241000	3366000	6874700	2070	272	1927	4367	10208	10208		1	9606
