Sequence	K Count	R Count	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Ratio H/L	Ratio H/L normalized	Ratio H/L variability [%]	Ratio H/L count	Ratio H/L iso-count	Ratio H/L type	Intensity	Intensity L	Intensity H	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAAAAVSR	0	1	Unmodified	999.54614	0.54614213	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	0	3.5	0.5			1	1		13.093	13.093	2	0.00021639	3477	DP1061-8	122.94	82.057			NaN	NaN	NaN	0	0	Median	43277000	0	43277000	0	450	0	0;1	0;1;2;3	0		4	9606
AAAAAAALQAK	1	0	Unmodified	955.54508	0.5450795	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4.33	0.471				2	1	12.87	12.87	1;2	1.842E-06	3077	DP1061-9	131.06	55.028			21.568	22.546	NaN	1	0	Median	193970000	6440200	187530000	1	162	1	2;3;4	4;5;6;7;8;9;10;11	7		8	9606
AAAAAAGAASGLPGPVAQGLK	1	0	Acetyl (Protein N-term)	1789.9686	0.96864688	452	Q96P70	IPO9	Importin-9	yes	yes	1	0	0	2	0		1				20.838	20.838	2	2.8979E-05	12868	DP1061-7	115.34	80.164			NaN	NaN	NaN	0	0	Median	3197500	0	3197500	2	452	2	5	12;13	12		2	9606
AAAAALSQQQSLQER	0	1	Unmodified	1570.8063	0.80633258	429	Q8WUQ7	CACTIN	Cactin	yes	yes	0	0	0	2	0		1				14.553	14.553	2	2.1572000000000004E-25	5242	DP1061-7	232.56	163.71			NaN	NaN	NaN	0	0	Median	6938800	0	6938800	3	429	3	6	14;15	15		2	9606
AAAANSGSSLPLFDCPTWAGKPPPGLHLDVVK	2	0	Acetyl (Protein N-term)	3314.6758	0.67578268	307	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	1	0	1	4	0				1		21.957	21.957	3	5.4489E-08	14669	DP1061-9	94.15	75.544			NaN	NaN	NaN	0	0	Median	5709400	0	5709400	4	307	4	7	16;17	17		2	9606
AAAEQAISVR	0	1	Unmodified	1014.5458	0.54580778	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				13.689	13.689	2	0.00026268	4173	DP1061-7	144.09	89.366			NaN	NaN	NaN	0	0	Median	26756000	0	26756000	5	284	5	8	18;19	18		2	9606
AAAIGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2264.126	0.12595216	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			3			19.737	19.737	3	3.5338E-08	11022	DP1061-8	119.37	92.141			NaN	NaN	NaN	0	0	Median	0	0	0	6	108	6	9;10;11	20;21;22	22		3	9606
AADALEEQQR	0	1	Unmodified	1129.5364	0.53636531	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.694	12.694	2	0.00063795	2361	DP1061-6	175.51	99.479			NaN	NaN	NaN	0	0	Median	4813600	0	4813600	7	346	7	12	23;24	23		2	9606
AADPPAENSSAPEAEQGGAE	0	0	Unmodified	1896.7973	0.79734361	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				2		14.551	14.551	2	1.2655E-20	4954	DP1061-9	199.33	175.86			NaN	NaN	NaN	0	0	Median	0	0	0	8	262	8	13;14	25;26;27;28;29	27		5	9606
AADTQVSETLKR	1	1	Acetyl (Protein N-term)	1359.6994	0.69940789	437	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	1	1	0	1					15.497	15.497	2	0.00030341	5217	DP1061-6	118.28	34.331			NaN	NaN	NaN	0	0	Median	4569600	0	4569600	9	437	9	15	30;31	31		2	9606
AAEAADLGLGAAVPVELR	0	1	Acetyl (Protein N-term)	1763.9418	0.94176342	563	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	1	0	0	3	0			1			23.889	23.889	2	2.2024E-08	16130	DP1061-8	133.48	94.602			NaN	NaN	NaN	0	0	Median	3889400	0	3889400	10	563	10	16	32;33	33		2	9606
AAECNIVVTQPR	0	1	Unmodified	1356.682	0.68198369	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				14.947	14.947	2	0.00055961	5668	DP1061-7	119.27	85.068			NaN	NaN	NaN	0	0	Median	30126000	0	30126000	11	296	11	17;18	34;35;36;37	36		4	9606
AAEDLFVNIR	0	1	Unmodified	1146.6033	0.60332266	543	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				19.181	19.181	2	0.0034721	10692	DP1061-7	91.087	67.319			0.85426	0.95813	NaN	1	0	Median	6824100	3870800	2953300	12	543	12	19	38;39	38		2	9606
AAGLATMISTMRPDIDNMDEYVR	0	2	3 Oxidation (M)	2617.1822	0.18222276	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	3	1	2	0		1				17.406	17.406	3	0.051816	8912	DP1061-7	45.844	19.605			NaN	NaN	NaN	0	0	Median	0	0	0	13	64	13	20	40	40		1	9606
AAGTAAALAFLSQESR	0	1	Acetyl (Protein N-term)	1604.8158	0.81583463	65	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	5	0					9	27.505	27.505	2	2.9148E-11	15076	DP1061-10	180.28	118.94			NaN	NaN	NaN	0	0	Median	196650000	0	196650000	14	65	14	21;22;23;24;25;26;27;28;29	41;42;43;44;45;46;47;48;49;50;51;52;53	43		13	9606
AAGTLYTYPENWR	0	1	Acetyl (Protein N-term)	1582.7416	0.74160705	147	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	4	0				1		22.139	22.139	2	8.3884E-06	14814	DP1061-9	153.1	121.07			NaN	NaN	NaN	0	0	Median	14816000	0	14816000	15	147	15	30	54;55	55		2	9606
AAGVEAAAEVAATEIK	1	0	Acetyl (Protein N-term)	1541.7937	0.7937022	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	3.5	0.5			1	1		23.166	23.166	2	6.9047E-21	15218	DP1061-8	168.82	129.04			2.5006	2.671	NaN	1	0	Median	31969000	10090000	21879000	16	209	16	31;32	56;57;58;59;60	59		5	9606
AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPK	2	0	Acetyl (Protein N-term);Oxidation (M)	3406.6198	0.61984352	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	1	1	3.5	0.5			2	2		23.594	23.594	3;4	4.7806E-23	15595	DP1061-8	110.31	96.041			1.7618	2.011	3.7335	2	0	Median	48190000	17919000	30271000	17	209	17	33;34;35;36	61;62;63;64;65;66;67;68;69;70;71;72;73	62	256	13	9606
AAGVNVEPFWPGLFAK	1	0	Unmodified	1701.8879	0.88787736	88	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					2	26.38	26.38	2	9.737E-08	15126	DP1061-10	134.3	94.519			NaN	NaN	NaN	0	0	Median	9187300	0	9187300	18	88	18	37;38	74;75	74		2	9606
AALEALLPYTER	0	1	Unmodified	1345.7242	0.72416608	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	2	0		1				20.074	20.074	2	0.0020626	11966	DP1061-7	108.67	55.877			NaN	NaN	NaN	0	0	Median	14011000	0	14011000	19	303	19	39	76	76		1	9606
AALETDENLLLCAPTGAGK	1	0	Unmodified	1942.967	0.9669919	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					19.639	19.639	2	0.012649	10025	DP1061-6	85.287	48.608			NaN	NaN	NaN	0	0	Median	0	0	0	20	66	20	40	77	77		1	9606
AALGPSSQNVTEYVVR	0	1	Acetyl (Protein N-term)	1731.8792	0.87916317	157	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	1	0	0	4	0.707			1	2	1	20.901	20.901	2;3	9.6008E-09	12400	DP1061-8	167.2	116.91			NaN	NaN	NaN	0	0	Median	80537000	0	80537000	21	157	21	41;42;43;44	78;79;80;81;82;83;84;85;86	83		9	9606
AALGVLESDLPSAVTLLK	1	0	Acetyl (Protein N-term)	1838.0401	0.040080486	420	Q8NEJ9	NGDN	Neuroguidin	yes	yes	1	0	0	4	0				3		27.153	27.153	2	2.1618E-05	19647	DP1061-9	115.57	83.32			NaN	NaN	NaN	0	0	Median	2260800	0	2260800	22	420	22	45;46;47	87;88;89	87		3	9606
AALMESQGQQQEER	0	1	Oxidation (M)	1619.7209	0.72094797	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	0	1	0	2					12.541	12.541	2	1.7687E-05	2131	DP1061-6	163.46	116.24			NaN	NaN	NaN	0	0	Median	0	0	0	23	346	23	48;49	90;91	90	457	2	9606
AALQELLSK	1	0	Unmodified	971.56515	0.56514624	251	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	23.627	23.627	2	0.038537	12175	DP1061-10	75.043	24.077			NaN	NaN	NaN	0	0	Median	22857000	0	22857000	24	251	24	50	92	92		1	9606
AALVDLEPGTMDSVR	0	1	Oxidation (M)	1588.7767	0.77667193	471	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	1	0	4	0				1		17.849	17.849	2	0.027185	9455	DP1061-9	73.951	37.267			NaN	NaN	NaN	0	0	Median	5704600	0	5704600	25	471	25	51	93	93	568	1	9606
AALVLEDGSVLR	0	1	Acetyl (Protein N-term)	1283.7085	0.70851601	149	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	1	0	0	1	0	1					23.605	23.605	2	0.00081081	13909	DP1061-6	97.813	20.87			NaN	NaN	NaN	0	0	Median	6673600	0	6673600	26	149	26	52	94;95	95		2	9606
AAMEALVVEVTK	1	0	Oxidation (M)	1275.6744	0.67443869	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	2	0		1				16.656	16.656	2	0.037341	7852	DP1061-7	70.942	41.132			NaN	NaN	NaN	0	0	Median	8702100	0	8702100	27	296	27	53	96;97	96		2	9606
AAPEEPQQRPPEAVAAAPAGTTSSR	0	2	Unmodified	2488.2306	0.23062824	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3	0			1			14.382	14.382	3	7.5236E-06	5045	DP1061-8	118.22	83.745			NaN	NaN	NaN	0	0	Median	50463000	0	50463000	28	450	28	54	98;99;100;101	99		4	9606
AAPLAGFGYGLPISR	0	1	Unmodified	1488.8089	0.80889876	351	Q15120	PDK3	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial	yes	yes	0	0	0	4	0				1		20.888	20.888	2	0.00014596	13411	DP1061-9	107.85	78.04			1.1899	1.2722	NaN	1	0	Median	7130500	3571600	3558900	29	351	29	55	102;103;104	103		3	9606
AASAAAASAAAASAASGSPGPGEGSAGGEKR	1	1	Acetyl (Protein N-term)	2584.2113	0.21134936	315	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	1	2	0		1				17.315	17.315	2	1.1306E-49	8787	DP1061-7	196.31	155.37			NaN	NaN	NaN	0	0	Median	0	0	0	30	315	30	56	105	105		1	9606
AASADSTTEGTPADGFTVLSTK	1	0	Unmodified	2126.0015	0.0015227276	63	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		18.217	18.217	2	6.2926E-16	9842	DP1061-9	179.55	125.21			NaN	NaN	NaN	0	0	Median	10700000	0	10700000	31	63	31	57	106;107;108	106		3	9606
AASITSEVFNK	1	0	Unmodified	1165.5979	0.59790293	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					16.558	16.558	2	0.0053406	6419	DP1061-6	95.775	43.826			NaN	NaN	NaN	0	0	Median	19865000	0	19865000	32	559	32	58	109;110	109		2	9606
AASTASHRPIK	1	1	Acetyl (Protein N-term)	1179.636	0.63601977	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	1	0	1	5	0					1	12.42	12.42	2	0.00072747	2910	DP1061-10	164.66	97.17			NaN	NaN	NaN	0	0	Median	9490400	0	9490400	33	173	33	59	111;112	111		2	9606
AASVHTVGEDTEETPHR	0	1	Unmodified	1834.8446	0.84456858	457	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				12.475	12.475	4	0.03402	2612	DP1061-7	57.703	35.607			NaN	NaN	NaN	0	0	Median	19945000	0	19945000	34	457	34	60	113	113		1	9606
AATASAGAGGIDGKPR	1	1	Acetyl (Protein N-term)	1440.7321	0.732105	288	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	3.86	1.81	2				5	14.804	14.804	2	6.4939E-10	5412	DP1061-10	153.74	96.823			2.6591	2.8442	NaN	1	0	Median	18201000	5187400	13014000	35	288	35	61;62;63;64;65;66;67	114;115;116;117;118;119;120;121;122;123;124	120		11	9606
AATGEEVSAEDLGGADLHCR	0	1	Unmodified	2056.912	0.91199621	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			6	2		16.457	16.457	2;3	1.3365E-140	7886	DP1061-8	321.09	321.09			0.89875	0.95387	2.6485	5	0	Median	812610000	401500000	411110000	36	501	36	68;69;70;71;72;73;74;75	125;126;127;128;129;130;131;132;133;134;135;136;137;138;139;140;141;142;143;144;145;146;147;148;149;150;151;152;153	133		29	9606
AATMTAAGHHAEVVVDPEDER	0	1	Oxidation (M)	2221.007	0.0069592315	329	Q13895	BYSL	Bystin	yes	yes	0	1	0	4	0				1		13.629	13.629	4	0.035986	4107	DP1061-9	47.618	24.965			NaN	NaN	NaN	0	0	Median	4957200	0	4957200	37	329	37	76	154	154		1	9606
AAVENLPTFLVELSR	0	1	Unmodified	1657.9039	0.90392136	344	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				23.326	23.326	2	0.00022897	15780	DP1061-7	112.64	51.954			NaN	NaN	NaN	0	0	Median	3796600	0	3796600	38	344	38	77	155;156	155		2	9606
AAVGEEKDINTFVGTPVEK	2	0	Unmodified	2003.0211	0.021135958	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	2					16.804	16.804	2;3	0.010234	6703	DP1061-6	75.017	48.192			NaN	NaN	NaN	0	0	Median	10744000	0	10744000	39	182	39	78;79	157;158;159	157		3	9606
AAVIGDVIR	0	1	Unmodified	912.53927	0.53926584	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				16.504	16.504	2	0.012391	7551	DP1061-7	93.374	3.824			NaN	NaN	NaN	0	0	Median	114750000	0	114750000	40	508	40	80	160;161	161		2	9606
AAVKEPLEFHAK	2	0	Acetyl (Protein N-term)	1380.7402	0.74015049	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	1	0	1	2	0		1				15.868	15.868	3	0.012569	6810	DP1061-7	66.023	34.675			NaN	NaN	NaN	0	0	Median	18753000	0	18753000	41	289	41	81	162	162		1	9606
ACARPLISVYSEKGESSGK	2	1	Acetyl (Protein N-term)	2080.0259	0.02590376	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	2	4	0				1		16.597	16.597	3	0.00076629	7795	DP1061-9	96.012	67.867			NaN	NaN	NaN	0	0	Median	7695600	0	7695600	42	162	42	82	163;164	164		2	9606
ACQSIYPLHDVFVR	0	1	Unmodified	1703.8454	0.84536062	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				2		18.59	18.59	2;3	6.5338E-06	10344	DP1061-9	128.57	109.73			NaN	NaN	NaN	0	0	Median	69173000	0	69173000	43	226	43	83;84	165;166;167;168	166		4	9606
ACTELGIR	0	1	Unmodified	918.4593	0.45930096	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				14.502	14.502	2	3.6658E-08	5083	DP1061-7	143.02	21.727			0.89293	0.92836	NaN	1	0	Median	256970000	136750000	120220000	44	116	44	85	169;170;171;172	172		4	9606
ADAEVIILPK	1	0	Acetyl (Protein N-term)	1109.6332	0.6332258	58	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	1	0	0	3	0			1			21.564	21.564	2	6.7415E-05	13258	DP1061-8	138.4	90.547			NaN	NaN	NaN	0	0	Median	7641400	0	7641400	45	58	45	86	173;174	174		2	9606
ADAFGDELFSVFEGDSTTAAGTK	1	0	Acetyl (Protein N-term)	2377.0598	0.059765888	176	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	1	0	0	2	0		1				27.421	27.421	2	1.7391E-05	19426	DP1061-7	117	89.026			NaN	NaN	NaN	0	0	Median	1484700	0	1484700	46	176	46	87	175;176;177	175		3	9606
ADEASELACPTPK	1	0	Unmodified	1387.6289	0.62894506	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					14.801	14.801	2	0.044378	4628	DP1061-6	71.555	43.351			NaN	NaN	NaN	0	0	Median	2248000	0	2248000	47	194	47	88	178	178		1	9606
ADEAYLIGR	0	1	Unmodified	1006.5084	0.50835964	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	1.22	2	1		1		16.659	16.659	2	1.3335000000000002E-54	7842	DP1061-7	220.25	145.04			0.76711	0.81096	23.027	2	0	Median	232710000	120240000	112470000	48	116	48	89;90;91;92	179;180;181;182;183;184;185;186;187;188;189	185		11	9606
ADFAQACQDAGVR	0	1	Unmodified	1407.6201	0.62011171	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.71	0.881	1	1	4	1		15.596	15.596	2	2.4059E-07	6299	DP1061-9	136.52	110.4			0.97418	0.97809	7.5593	3	0	Median	919100000	457460000	461640000	49	116	49	93;94;95;96;97;98;99	190;191;192;193;194;195;196;197;198;199;200;201;202;203;204;205	203		16	9606
ADGELNVDSLITR	0	1	Acetyl (Protein N-term)	1443.7205	0.72053726	234	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	4	0				1		22.323	22.323	2	1.1796E-07	15052	DP1061-9	132.5	67.345			6.3739	6.8147	NaN	1	0	Median	30832000	4393200	26438000	50	234	50	100	206;207;208;209	206		4	9606
ADGYEPPVQESV	0	0	Unmodified	1289.5776	0.57756142	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4.5	0.5				1	1	17.802	17.802	2	0.026962	9280	DP1061-9	76.17	51.032			NaN	NaN	NaN	0	0	Median	0	0	0	51	226	51	101;102	210;211	211		2	9606
ADHSFSDGVPSDSVEAAK	1	0	Acetyl (Protein N-term)	1859.8174	0.81735077	460	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	1	0	0	3	0			1			17.071	17.071	2	1.4375E-09	7776	DP1061-8	163.33	124.07			NaN	NaN	NaN	0	0	Median	0	0	0	52	460	52	103	212	212		1	9606
ADILEDKDGK	2	0	Unmodified	1102.5506	0.55061839	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3	0			1			12.603	12.603	2	0.00042675	2989	DP1061-8	117.01	79.949			2.3144	2.6418	NaN	1	0	Median	97578000	27092000	70486000	53	209	53	104	213;214;215;216	216		4	9606
ADKDYHFKVDNDENEHQLSLR	2	1	Unmodified	2572.1942	0.19424273	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4	0				4		15.257	15.257	3;4;5	1.5643E-85	5948	DP1061-9	285.34	261.86			NaN	NaN	NaN	0	0	Median	1593899999.9999998	0	1593899999.9999998	54	95	54	105;106;107;108	217;218;219;220;221;222;223;224;225;226	223		10	9606
ADKEAAFDDAVEER	1	1	Acetyl (Protein N-term)	1606.7111	0.71109479	299	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	1	0	1	4	0				1		17.309	17.309	2	4.0693E-06	8614	DP1061-9	129.37	99.835			NaN	NaN	NaN	0	0	Median	22745000	0	22745000	55	299	55	109	227;228	228		2	9606
ADLDKLNIDSIIQR	1	1	Acetyl (Protein N-term)	1654.889	0.88899957	163	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	4.4	0.49				3	2	22.995	22.995	2;3	6.842200000000001E-73	14465	DP1061-9	285.32	212.71			NaN	NaN	NaN	0	0	Median	684180000	0	684180000	56	163	56	110;111;112;113;114	229;230;231;232;233;234;235;236;237;238;239	234		11	9606
ADNEKLDNQR	1	1	Acetyl (Protein N-term)	1243.5793	0.57929275	33	O00629	KPNA4	Importin subunit alpha-3	yes	yes	1	0	1	4	1			1		1	12.636	12.636	2	1.4651E-05	3112	DP1061-8	179.81	123.37			0.17846	0.19089	NaN	1	0	Median	20207000	4275900	15931000	57	33	57	115;116	240;241;242;243	242		4	9606
ADPDGPEAQAEACSGER	0	1	Unmodified	1758.7115	0.71150549	518	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	0	5	0					1	14.296	14.296	2	1.2014E-07	4693	DP1061-10	158.86	145.05			NaN	NaN	NaN	0	0	Median	1655300	0	1655300	58	518	58	117	244;245	245		2	9606
ADPDVLTEVPAALKR	1	1	Acetyl (Protein N-term)	1635.8832	0.88318591	150	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	1	0	1	4	0				1		20.544	20.544	2	0.00011733	12870	DP1061-9	110.93	75.518			NaN	NaN	NaN	0	0	Median	9874400	0	9874400	59	150	59	118	246;247	247		2	9606
ADSLVEGTSSR	0	1	Unmodified	1120.536	0.53603095	413	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		2				13.157	13.157	2	0.0017567	3479	DP1061-7	117.31	43.056			NaN	NaN	NaN	0	0	Median	0	0	0	60	413	60	119;120	248;249	248		2	9606
ADVEEEFLAFR	0	1	Unmodified	1324.6299	0.62993134	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.267	21.267	2	0.00013456	13421	DP1061-7	163.32	113.6			NaN	NaN	NaN	0	0	Median	5747800	0	5747800	61	182	61	121	250;251	250		2	9606
AEAEAQAEELSFPR	0	1	Unmodified	1546.7264	0.72635092	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.43	0.904	1	3	2	1		17.805	17.805	2;3	3.8866E-49	9066	DP1061-7	251.75	251.75			0.84859	0.9067	5.4822	6	0	Median	1892999999.9999998	1014599999.9999999	878420000	62	116	62	122;123;124;125;126;127;128	252;253;254;255;256;257;258;259;260;261;262;263;264;265;266;267;268;269;270;271;272;273;274;275;276	259		25	9606
AEAESLYQSK	1	0	Unmodified	1124.535	0.53496832	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	5	0					1	13.8	13.8	2	0.0033868	4339	DP1061-10	112.11	76.662		+	NaN	NaN	NaN	0	0	Median	6302800	6302800	0	63	80	63	129	277;278	278		2	9606
AEAGAGLSETVTETTVTVTTEPENR	0	1	Acetyl (Protein N-term)	2604.2402	0.24024945	61	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	1	0	0	5	0					5	21.655	21.655	2;3	1.9549E-47	10444	DP1061-10	224.55	201.74			NaN	NaN	NaN	0	0	Median	25572000	0	25572000	64	61	64	130;131;132;133;134	279;280;281;282;283;284;285;286	286		8	9606
AEAGDNLGALVR	0	1	Unmodified	1184.6149	0.61494998	196	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		16.972	16.972	2	0.00060039	8244	DP1061-9	111.06	83.044			1.4531	1.5536	NaN	1	0	Median	14006000	5133900	8871800	65	196	65	135	287;288	287		2	9606
AEDKEWMPVTK	2	0	Oxidation (M)	1348.6333	0.63330216	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	1	4	0				1		13.66	13.66	3	0.00025035	4100	DP1061-9	110.38	110.38			8.6686	9.0694	NaN	1	0	Median	50836000	7487400	43349000	66	123	66	136	289;290	289	168	2	9606
AEEDAALQAK	1	0	Unmodified	1044.5088	0.50875357	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0				1		12.645	12.645	2	0.0004861	2918	DP1061-9	139.88	25.095			NaN	NaN	NaN	0	0	Median	8611500	0	8611500	67	318	67	137	291;292	292		2	9606
AEEGIAAGGVMDVNTALQEVLK	1	0	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	142	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	5	0					8	27.597	27.597	2	2.3071E-09	15174	DP1061-10	130.01	88.264			NaN	NaN	NaN	0	0	Median	0	0	0	68	142	68	138;139;140;141;142;143;144;145	293;294;295;296;297;298;299;300	296	189	8	9606
AEEILEK	1	0	Unmodified	830.43855	0.43854874	258	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	13.029	13.029	2	0.00066217	3613	DP1061-10	107.43	44.715			8.578	8.5107	NaN	1	0	Median	81682000	8197800	73484000	69	258	69	146	301;302;303	302		3	9606
AEFEDQDDEAR	0	1	Unmodified	1323.5215	0.5215031	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	0.816	1	1	1			13.743	13.743	2	9.8047E-05	4112	DP1061-7	179.51	132.32			NaN	NaN	NaN	0	0	Median	45651000	0	45651000	70	341	70	147;148;149	304;305;306;307;308;309	306		6	9606
AEFVEVTK	1	0	Unmodified	921.48075	0.48074791	13	CON__P02769			yes	yes	0	0	0	3	0			1			14.961	14.961	2	0.045584	5843	DP1061-8	74.301	31.387		+	NaN	NaN	NaN	0	0	Median	5795300	5795300	0	71	13	71	150	310	310		1	9606
AEGSSTASSGSQLAEGK	1	0	Unmodified	1565.7169	0.71690845	522	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	2	0		1				12.632	12.632	2	9.7518E-05	2820	DP1061-7	116.24	73.52			NaN	NaN	NaN	0	0	Median	0	0	0	72	522	72	151	311	311		1	9606
AEGYAEGDLTLYHR	0	1	Unmodified	1593.7423	0.74233534	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				16.681	16.681	2	0.00022215	7952	DP1061-7	117.25	80.666			NaN	NaN	NaN	0	0	Median	4344600	0	4344600	73	407	73	152	312;313	312		2	9606
AELGEADEAELQR	0	1	Acetyl (Protein N-term)	1471.6791	0.67906638	560	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	yes	yes	1	0	0	5	0					1	19.131	19.131	2	0.001789	8395	DP1061-10	87.713	70.245			NaN	NaN	NaN	0	0	Median	6963200	0	6963200	74	560	74	153	314	314		1	9606
AELNEFLTR	0	1	Unmodified	1091.5611	0.56112349	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	5	0					2	22.407	22.407	2	0.00094749	11819	DP1061-10	124.98	61.418			NaN	NaN	NaN	0	0	Median	15959000	0	15959000	75	140	75	154;155	315;316;317;318	318		4	9606
AELQMLLEEEIPSGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1743.8601	0.86006721	409	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	0	3	0			1			25.218	25.218	2	0.0023531	17668	DP1061-8	80.014	47.685			NaN	NaN	NaN	0	0	Median	739290	0	739290	76	409	76	156	319	319	509	1	9606
AELQMLLEEEIPSGKR	1	1	Acetyl (Protein N-term);Oxidation (M)	1899.9612	0.96117824	409	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	1	3	0			1			23.058	23.058	2	0.00028044	15157	DP1061-8	100.22	64.223			NaN	NaN	NaN	0	0	Median	1932700	0	1932700	77	409	77	157	320;321	320	509	2	9606
AELYKEPTNEELNR	1	1	Unmodified	1704.8319	0.83187862	496	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	2	0		1				14.757	14.757	2	0.0020648	5505	DP1061-7	152.54	104.25			NaN	NaN	NaN	0	0	Median	0	0	0	78	496	78	158	322	322		1	9606
AEPASVAAESLAGSR	0	1	Acetyl (Protein N-term)	1456.7158	0.71578623	506	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	1	0	0	5	0					1	19.653	19.653	2	1.2864E-06	8713	DP1061-10	130.69	102.91			NaN	NaN	NaN	0	0	Median	11338000	0	11338000	79	506	79	159	323;324	323		2	9606
AEQDEAEKLQR	1	1	Unmodified	1315.6368	0.63680763	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	1	4	0				1		12.502	12.502	2	0.030782	2778	DP1061-9	100.02	36.598			NaN	NaN	NaN	0	0	Median	2741000	0	2741000	80	350	80	160	325	325		1	9606
AEQLGAEGNVDESQK	1	0	Unmodified	1573.722	0.72199382	504	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	0	0	0	4	0				1		13.631	13.631	2	3.6697E-06	4078	DP1061-9	177.83	136.55			NaN	NaN	NaN	0	0	Median	4076500	0	4076500	81	504	81	161	326;327;328	327		3	9606
AERGELDLTGAK	1	1	Acetyl (Protein N-term)	1300.6623	0.6622941	122	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	1	0	1	5	0					5	16.526	16.526	2	0.010076	7131	DP1061-10	84.188	30.413			NaN	NaN	NaN	0	0	Median	6584100	0	6584100	82	122	82	162;163;164;165;166	329;330;331;332;333;334	331		6	9606
AESSDKLYR	1	1	Acetyl (Protein N-term)	1109.5353	0.53530267	104	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	1	2	0		2				14.352	14.352	2	0.0084036	5040	DP1061-7	99.139	52.057			NaN	NaN	NaN	0	0	Median	0	0	0	83	104	83	167;168	335;336	336		2	9606
AETECQNTEYQQLLDIK	1	0	Unmodified	2081.9575	0.95754942	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.5	1.12	1	1	1	1		19.457	19.457	2	4.1906E-11	11549	DP1061-9	187.11	140.05		+	NaN	NaN	NaN	0	0	Median	19211000	19211000	0	84	17	84	169;170;171;172	337;338;339;340;341;342;343;344	342		8	9606
AETLEFNDVYQEVK	1	0	Acetyl (Protein N-term)	1725.8097	0.8097462	297	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	3.5	0.5			1	1		22.457	22.457	2	3.6004E-18	14364	DP1061-8	218.55	180.84			NaN	NaN	NaN	0	0	Median	51229000	0	51229000	85	297	85	173;174	345;346;347;348	345		4	9606
AEVEQVELPDGK	1	0	Unmodified	1312.6511	0.65106071	516	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	2	0		1				16.249	16.249	2	0.0036876	7292	DP1061-7	97.813	49.019			NaN	NaN	NaN	0	0	Median	5397100	0	5397100	86	516	86	175	349;350	350		2	9606
AEVNTIPGFDGVVK	1	0	Unmodified	1444.7562	0.75619449	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.889	18.889	2	0.00057713	9837	DP1061-8	99.752	67.534			1.0999	1.1749	NaN	1	0	Median	28907000	14459000	14448000	87	86	87	176	351;352;353;354;355	354		5	9606
AEVNTIPGFDGVVKDAEEAVR	1	1	Unmodified	2215.1121	0.11207623	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.928	20.928	3	5.2071E-21	12435	DP1061-8	149.12	129.7			0.79942	0.83248	NaN	1	0	Median	40033000	19688000	20345000	88	86	88	177	356;357;358;359	357		4	9606
AEVQVLVLDGR	0	1	Acetyl (Protein N-term)	1239.6823	0.68230126	171	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	5	0					2	26.927	26.927	2	0.027017	15715	DP1061-10	68.355	25.757			NaN	NaN	NaN	0	0	Median	0	0	0	89	171	89	178;179	360;361	361		2	9606
AEWLLAVR	0	1	Unmodified	956.54435	0.54435122	510	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	4	0				1		19.793	19.793	2	0.0049675	11921	DP1061-9	117.17	56.381			NaN	NaN	NaN	0	0	Median	5917100	0	5917100	90	510	90	180	362;363	363		2	9606
AEYLASIFGTEK	1	0	Acetyl (Protein N-term)	1369.6765	0.67654718	282	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	0	4	0				1		25.979	25.979	2	0.01193	18800	DP1061-9	77.533	28.11			NaN	NaN	NaN	0	0	Median	0	0	0	91	282	91	181	364	364		1	9606
AEYLASIFGTEKDK	2	0	Acetyl (Protein N-term)	1612.7985	0.79845323	282	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	1	4	0				1		23.474	23.474	2	0.040536	16408	DP1061-9	57.175	21.175			NaN	NaN	NaN	0	0	Median	2761600	0	2761600	92	282	92	182	365	365		1	9606
AFADAMEVIPSTLAENAGLNPISTVTELR	0	1	Oxidation (M)	3045.5329	0.53286642	206	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	3	0			1			23.421	23.421	3	0.0002504	15532	DP1061-8	73.603	52.946			NaN	NaN	NaN	0	0	Median	4317200	0	4317200	93	206	93	183	366;367;368	366	253	3	9606
AFAVGVQQVLLK	1	0	Unmodified	1271.7602	0.76015765	75	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				19.529	19.529	2	0.0097966	11251	DP1061-7	87.639	58.553			NaN	NaN	NaN	0	0	Median	2849300	0	2849300	94	75	94	184	369;370;371	370		3	9606
AFAVQSAVR	0	1	Unmodified	947.51886	0.51886475	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	4	0				1		14.997	14.997	2	0.019569	5892	DP1061-9	85.064	36.781			NaN	NaN	NaN	0	0	Median	5331300	0	5331300	95	341	95	185	372	372		1	9606
AFENDVDALCNLR	0	1	Unmodified	1535.7038	0.70384134	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.17	0.373			5	1		21.722	21.722	2	2.8864000000000003E-25	10511	DP1061-8	180.09	154.96			0.94813	1	1.2711	2	0	Median	341040000	165220000	175820000	96	87	96	186;187;188;189;190;191	373;374;375;376;377;378;379;380;381;382;383;384;385;386	376		14	9606
AFITNIPFDVK	1	0	Unmodified	1263.6863	0.68632401	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			20.724	20.724	2	0.00034537	12049	DP1061-8	117.71	117.71			2.2324	2.3845	NaN	1	0	Median	46679000	12710000	33969000	97	209	97	192	387;388;389;390;391;392	388		6	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	1	0	Unmodified	2751.4596	0.45956554	90	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				3		21.82	21.82	2;3	2.0488E-40	14432	DP1061-9	184.83	164.73			NaN	NaN	NaN	0	0	Median	45804000	6920700	38883000	98	90	98	193;194;195	393;394;395;396;397;398;399;400;401	395		9	9606
AFLIEEQK	1	0	Unmodified	976.52295	0.52294707	193	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					5	18.203	18.203	2	0.0078072	9854	DP1061-10	110.81	50.009			NaN	NaN	NaN	0	0	Median	18904000	0	18904000	99	193	99	196;197;198;199;200	402;403;404;405;406;407;408	407		7	9606
AFMGTPVQK	1	0	Oxidation (M)	993.49535	0.49535211	182	P46013	MKI67	Antigen KI-67	yes	no	0	1	0	2.33	1.25	1	1		1		13.023	13.023	2	0.00012748	2678	DP1061-6	141.52	104.82			NaN	NaN	NaN	0	0	Median	80753000	0	80753000	100	182	100	201;202;203	409;410;411;412;413;414	410	223	6	9606
AFSSPQEEEEAGFTGR	0	1	Unmodified	1740.7591	0.75910761	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	3	1		1		1		16.828	16.828	2	8.9191E-08	8052	DP1061-9	138.21	100.22			NaN	NaN	NaN	0	0	Median	36365000	0	36365000	101	334	101	204;205	415;416;417;418	417		4	9606
AFSSPQEEEEAGFTGRR	0	2	Unmodified	1896.8602	0.86021864	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2	0		1				15.587	15.587	3	0.039081	6384	DP1061-7	53.565	33.474			NaN	NaN	NaN	0	0	Median	7518100	0	7518100	102	334	102	206	419;420	419		2	9606
AFVAIGDYNGHVGLGVK	1	0	Unmodified	1715.8995	0.89950468	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				2		18.408	18.408	2;3	2.193E-07	10144	DP1061-9	130.1	104.62			NaN	NaN	NaN	0	0	Median	33643000	0	33643000	103	123	103	207;208	421;422;423;424	424		4	9606
AFVHWYVGEGMEEGEFSEAR	0	1	Oxidation (M)	2345.0059	0.005896599	264;394;465	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	3.5	0.5			1	1		19.146	19.146	3	5.4361E-12	11061	DP1061-9	113.86	103.35			3.3358	3.5665	NaN	1	0	Median	39223000	6349800	32873000	104	264;394;465	104	209;210	425;426;427;428;429	428	321	5	9606
AFYGDTLVTGFAR	0	1	Unmodified	1416.7038	0.70376498	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.07	0.249			14	1		27.017	27.017	2	1.6055E-11	11655	DP1061-8	151.22	151.22			0.92018	0.97073	6.663	5	0	Median	644720000	326490000	318220000	105	501	105	211;212;213;214;215;216;217;218;219;220;221;222;223;224;225	430;431;432;433;434;435;436;437;438;439;440;441;442;443;444;445;446;447;448;449;450;451;452;453;454;455;456;457;458;459;460	432		31	9606
AFYPEEISSMVLTK	1	0	Oxidation (M)	1629.796	0.79601039	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			3			21.783	21.783	2;3	0.00064012	12048	DP1061-8	97.452	97.452			10.706	11.435	NaN	1	0	Median	151740000	9719800	142020000	106	108	106	226;227;228	461;462;463;464;465;466;467;468;469;470;471	468	129	11	9606
AFYPEEISSMVLTK	1	0	Unmodified	1613.8011	0.80109577	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			2			21.331	21.331	2	0.0098825	12850	DP1061-8	84.479	52.15			NaN	NaN	NaN	0	0	Median	47750000	0	47750000	107	108	106	229;230	472;473;474	472		3	9606
AGAAGGPEEEAEKPVK	2	0	Unmodified	1538.7577	0.75765105	430	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					1	12.477	12.477	3	2.8946E-05	3045	DP1061-10	112.02	73.623			NaN	NaN	NaN	0	0	Median	7525100	0	7525100	108	430	107	231	475	475		1	9606
AGAIAPCEVTVPAQNTGLGPEK	1	0	Unmodified	2179.0943	0.094317676	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				3		17.652	17.652	2;3	1.3879E-88	9054	DP1061-9	242.91	210.84			9.6227	10.059	90.418	2	0	Median	116280000	11972000	104310000	109	90	108	232;233;234	476;477;478;479;480;481;482	477		7	9606
AGEAPTENPAPPTQQSSAE	0	0	Unmodified	1880.8388	0.8388145	126	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	3	0			1			15.01	15.01	2	0.036005	5920	DP1061-8	72.891	32.395			NaN	NaN	NaN	0	0	Median	0	0	0	110	126	109	235	483	483		1	9606
AGFAGDDAPR	0	1	Unmodified	975.44101	0.44100836	261;244	P63267;P68133;P68032;P62736;P63261;P60709;Q6S8J3;P0CG38;A5A3E0;P0CG39	ACTG2;ACTA1;ACTC1;ACTA2;ACTG1;ACTB;POTEE;POTEI;POTEF;POTEJ	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F;POTE ankyrin domain family member J	no	no	0	0	0	4	0				1		13.629	13.629	2	0.0040489	4103	DP1061-9	85.676	62.247			2.4272	2.595	NaN	1	0	Median	18706000	5949800	12756000	111	244;261	110	236	484;485	484		2	9606
AGFWVGTAPLVAAGR	0	1	Acetyl (Protein N-term)	1513.8041	0.80414773	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	1	0	0	3	0			1			25.115	25.115	2	7.8367E-05	17520	DP1061-8	102.06	102.06			0.96753	1.0379	NaN	1	0	Median	4697200	2963100	1734100	112	86	111	237	486;487;488	488		3	9606
AGGAGFGTDGDDQEAINEAISVK	1	0	Unmodified	2221.0135	0.013484397	446	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	0	0	2	0		1				19.229	19.229	2	1.4162E-05	10862	DP1061-7	102.29	68.99			NaN	NaN	NaN	0	0	Median	0	0	0	113	446	112	238	489	489		1	9606
AGLELLSDQGYR	0	1	Acetyl (Protein N-term)	1362.6779	0.67794416	503	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	1	0	0	5	0					1	23.246	23.246	2	1.8266E-05	11684	DP1061-10	133.99	86.034			NaN	NaN	NaN	0	0	Median	11848000	0	11848000	114	503	113	239	490;491	490		2	9606
AGLESGAEPGDGDSDTTK	1	0	Unmodified	1705.7279	0.72786706	58	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	3	0			1			13.649	13.649	2	2.082E-09	4277	DP1061-8	177.42	139.87			NaN	NaN	NaN	0	0	Median	6624300	0	6624300	115	58	114	240	492;493;494;495	493		4	9606
AGLQFPVGR	0	1	Unmodified	943.52395	0.52395013	106	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;Q71UI9;P0C0S5;Q8IUE6;Q96QV6;P16104	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFV;H2AFZ;HIST2H2AB;HIST1H2AA;H2AFX	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.V;Histone H2A.Z;Histone H2A type 2-B;Histone H2A type 1-A;Histone H2AX	no	no	0	0	0	5	0					3	21.778	21.778	2	0.019432	10190	DP1061-10	85.212	35.085			NaN	NaN	NaN	0	0	Median	80067000	0	80067000	116	106	115	241;242;243	496;497;498;499;500	497		5	9606
AGLSPANCQSDR	0	1	Unmodified	1274.5673	0.56734786	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	0.816	1	1	1			12.667	12.667	2	0.00020663	2311	DP1061-6	123.75	95.54			NaN	NaN	NaN	0	0	Median	16740000	0	16740000	117	341	116	244;245;246	501;502;503;504;505;506	503		6	9606
AGPGSLELCGLPSQK	1	0	Unmodified	1512.7606	0.76062794	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.29	1	1	2	1	1	17.994	17.994	2	1.1027E-07	9297	DP1061-9	182.23	127.15			NaN	NaN	NaN	0	0	Median	935160000	0	935160000	118	339	117	247;248;249;250;251;252	507;508;509;510;511;512;513;514;515	515		9	9606
AGPNASIISLK	1	0	Unmodified	1069.6132	0.61315906	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				16.747	16.747	2	0.055158	8105	DP1061-7	68.847	32.465			NaN	NaN	NaN	0	0	Median	24304000	0	24304000	119	485	118	253	516	516		1	9606
AGPQPLALQLEQLLNPR	0	1	Acetyl (Protein N-term)	1899.0578	0.057796236	521	Q9NY61	AATF	Protein AATF	yes	yes	1	0	0	3	0			1			27.248	27.248	2	0.0035548	19336	DP1061-8	86.467	50.944			NaN	NaN	NaN	0	0	Median	0	0	0	120	521	119	254	517	517		1	9606
AGPVAVQVK	1	0	Unmodified	867.5178	0.51780212	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.5	1			1		13.444	13.444	2	0.0076831	3870	DP1061-9	106.42	58.567			NaN	NaN	NaN	0	0	Median	32890000	0	32890000	121	318	120	255;256	518;519;520;521	521		4	9606
AGTATSPAGSSPAVAGGTQR	0	1	Unmodified	1742.8547	0.85473933	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	0.816		1	1	1		13.19	13.19	2	1.0614E-11	3455	DP1061-7	147.52	89.737			NaN	NaN	NaN	0	0	Median	7963100	0	7963100	122	318	121	257;258;259	522;523;524;525;526	523		5	9606
AGTDSPVSCASVTEER	0	1	Unmodified	1664.7312	0.7311783	384	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		2				14.798	14.798	2	2.2941E-08	5549	DP1061-7	162.93	105.58			NaN	NaN	NaN	0	0	Median	0	0	0	123	384	122	260;261	527;528	527		2	9606
AGTHILCIK	1	0	Unmodified	1011.5535	0.55353569	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				14.171	14.171	2;3	3.3443E-06	4664	DP1061-7	137.9	137.9			1.0059	1.0539	NaN	1	0	Median	92784000	46141000	46643000	124	116	123	262;263	529;530;531;532;533;534	532		6	9606
AGTVVLDDVELR	0	1	Acetyl (Protein N-term)	1327.6983	0.69834526	141	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	1	0	0	2	0		1				22.411	22.411	2	0.00049786	14816	DP1061-7	107.24	67.939			NaN	NaN	NaN	0	0	Median	2636900	0	2636900	125	141	124	264	535;536	536		2	9606
AGTYFSNQAVRACILCVHPR	0	2	Unmodified	2319.1365	0.13647404	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	2	0		1				14.176	14.176	4	0.04965	4690	DP1061-7	19.319	2.8966			0.25203	0.2603	NaN	1	0	Median	11250000	8259300	2990800	126	340	125	265	537	537		0	9606
AGVNTVTTLVENK	1	0	Unmodified	1344.7249	0.72489436	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		16.803	16.803	2	4.7829E-06	7940	DP1061-9	180.09	98.566			NaN	NaN	NaN	0	0	Median	34492000	0	34492000	127	242	126	266	538;539	538		2	9606
AHADHIGQGFER	0	1	Unmodified	1336.6272	0.627246	388	Q6PCB5	RSBN1L	Round spermatid basic protein 1-like protein	yes	yes	0	0	0	2	0		1				12.756	12.756	3	0.019258	2929	DP1061-7	71.268	38.043			NaN	NaN	NaN	0	0	Median	14754000	0	14754000	128	388	127	267	540;541	541		2	9606
AHINLVR	0	1	Unmodified	821.48717	0.48717069	373	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				12.845	12.845	2	0.046846	3007	DP1061-7	74.832	20.295			NaN	NaN	NaN	0	0	Median	9123400	0	9123400	129	373	128	268	542	542		1	9606
AHLMEIQVNGGTVAEK	1	0	Oxidation (M)	1711.8563	0.85631924	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	2	1.41	2			1		14.863	14.863	2;3	5.129600000000001E-29	5615	DP1061-9	225.32	173.6			NaN	NaN	NaN	0	0	Median	23882000	0	23882000	130	169	129	269;270;271	543;544;545;546;547	547	213	5	9606
AHQVVEDGYEFFAK	1	0	Unmodified	1638.7678	0.7678218	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.59	0.651			11	9	2	24.001	24.001	2;3	2.532E-07	8986	DP1061-9	182.41	145.46			85.922	89.816	NaN	1	0	Median	1626399999.9999998	6531600	1619899999.9999998	131	163;233;234	130	272;273;274;275;276;277;278;279;280;281;282;283;284;285;286;287;288;289;290;291;292;293	548;549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571;572;573;574;575;576;577;578;579;580;581;582;583;584;585;586;587;588;589;590;591;592;593	581		46	9606
AHQVVEDGYEFFAKR	1	1	Unmodified	1794.8689	0.86893283	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.75	0.433			1	3		17.408	17.408	2;3;4	1.1472E-06	8551	DP1061-9	176.56	154.07			NaN	NaN	NaN	0	0	Median	140640000	0	140640000	132	163;233;234	131	294;295;296;297	594;595;596;597;598;599;600	596		7	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	0	2	2 Oxidation (M)	3215.4724	0.4724082	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	1	3	0.707		1	2	1		14.804	14.804	3;4	5.1584E-06	5444	DP1061-9	102.46	86.058			NaN	NaN	NaN	0	0	Median	130410000	0	130410000	133	339	132	298;299;300;301	601;602;603;604;605;606;607;608;609;610;611	611	443;444	11	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	0	2	Oxidation (M)	3199.4775	0.47749358	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2.67	0.943		2		1		15.534	15.534	4;5	2.5315E-07	6278	DP1061-7	116.2	93.818			NaN	NaN	NaN	0	0	Median	62462000	0	62462000	134	339	132	302;303;304	612;613;614;615;616;617;618;619;620;621	617	443;444	10	9606
AHTGPVFTMYTTLR	0	1	Oxidation (M)	1609.7923	0.79226242	392	Q6ZMW3	EML6	Echinoderm microtubule-associated protein-like 6	yes	yes	0	1	0	4	0				1		17.081	17.081	2	0.01326	8476	DP1061-9	77.662	34.161			NaN	NaN	NaN	0	0	Median	4331800	0	4331800	135	392	133	305	622	622	489	1	9606
AIADTGANVVVTGGK	1	0	Unmodified	1371.7358	0.73579339	205	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			2			15.599	15.599	2	0.0081112	6399	DP1061-8	92.925	39.174			NaN	NaN	NaN	0	0	Median	0	0	0	136	205	134	306;307	623;624	624		2	9606
AIAELGIYPAVDPLDSTSR	0	1	Unmodified	1987.0262	0.026221336	94	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.608	21.608	2	1.1487E-07	14246	DP1061-9	106.29	106.29			1.1826	1.2746	40.1	2	0	Median	15687000	8180200	7507000	137	94	135	308;309	625;626;627;628;629	628		5	9606
AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFK	1	0	Unmodified	3950.0618	0.061825566	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				22.737	22.737	4	0.00079573	15314	DP1061-7	48.392	36.911			NaN	NaN	NaN	0	0	Median	13166000	13166000	0	138	116	136	310	630;631;632;633	632		4	9606
AIAYLFPSGLFEK	1	0	Unmodified	1454.781	0.78095267	274	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	4	0				1		22.714	22.714	2	0.00099159	15540	DP1061-9	110.38	81.425			NaN	NaN	NaN	0	0	Median	4238800	0	4238800	139	274	137	311	634;635	635		2	9606
AIEEQMVAAK	1	0	Oxidation (M)	1104.5485	0.5485099	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				12.511	12.511	2	0.0026339	2638	DP1061-7	112.41	40.533			NaN	NaN	NaN	0	0	Median	29400000	0	29400000	140	485	138	312	636;637	636	579	2	9606
AIEMFMNK	1	0	2 Oxidation (M)	1014.4514	0.45143839	329	Q13895	BYSL	Bystin	yes	yes	0	2	0	4	0				1		13.67	13.67	2	0.0083063	4138	DP1061-9	94.262	47.891			NaN	NaN	NaN	0	0	Median	7979600	0	7979600	141	329	139	313	638;639	639	431;432	2	9606
AIENIDTLTNLESLFLGK	1	0	Unmodified	1990.0623	0.062272491	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				2		25.163	25.163	2	1.793E-07	18103	DP1061-9	136.3	63.959			NaN	NaN	NaN	0	0	Median	0	0	0	142	360	140	314;315	640;641	640		2	9606
AIGDHFYK	1	0	Unmodified	949.46577	0.46576654	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			1			14.247	14.247	2	0.03814	5080	DP1061-8	76.035	34.532			NaN	NaN	NaN	0	0	Median	12002000	0	12002000	143	43	141	316	642;643	643		2	9606
AIGIGAYLVR	0	1	Unmodified	1031.6128	0.61276513	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	3	0.816		1	1	1		19.377	19.377	2	1.2115E-06	10978	DP1061-7	138.24	88.652			0.87484	0.92402	9.5527	3	0	Median	241280000	132090000	109190000	144	309;34	142	317;318;319	644;645;646;647;648;649;650;651;652;653	647		10	9606
AIGNTELENK	1	0	Unmodified	1087.551	0.55095274	176	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	2	0		1				13.364	13.364	2	0.021377	3667	DP1061-7	80.219	36.584			NaN	NaN	NaN	0	0	Median	3529100	0	3529100	145	176	143	320	654	654		1	9606
AIGVLTSGGDAQGMNAAVR	0	1	Oxidation (M)	1802.8945	0.89449566	285	Q01813;P17858	PFKP;PFKL	ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type	yes	no	0	1	0	2	0		1				16.188	16.188	2	0.0010747	7259	DP1061-7	103.97	55.787			NaN	NaN	NaN	0	0	Median	5672600	0	5672600	146	285	144	321	655;656	656	359	2	9606
AIHTAPVATMAFDPTSTLLATGGCDGAVR	0	1	Oxidation (M)	2916.411	0.41097714	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	1	0	2	0		1				19.465	19.465	3	6.0138E-05	11192	DP1061-7	83.879	60.825			NaN	NaN	NaN	0	0	Median	10749000	0	10749000	147	303	145	322	657;658;659	659	372	3	9606
AILVDLEPGTMDSVR	0	1	Oxidation (M)	1630.8236	0.82362212	98;328;320	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	3.75	0.829			2	1	1	19.005	19.005	2	0.00010628	10876	DP1061-9	108.98	67.701			4.3039	4.5753	4.2011	2	0	Median	336920000	58561000	278360000	148	98;328;320	146	323;324;325;326	660;661;662;663;664;665;666;667;668;669;670	668	118	11	9606
AILVDLEPGTMDSVR	0	1	Unmodified	1614.8287	0.8287075	98;328;320	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		20.194	20.194	2	1.4141E-20	12348	DP1061-9	171.92	137.17			3.7499	4.0178	12.122	2	0	Median	94364000	20908000	73456000	149	98;328;320	146	327;328	671;672;673;674;675;676;677;678	675		8	9606
AIMYEETTYSK	1	0	Oxidation (M)	1350.6013	0.60133333	214	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	1	0	1.5	0.5	1	1				14.897	14.897	2	0.0034976	5683	DP1061-7	101.65	69.775			NaN	NaN	NaN	0	0	Median	10346000	0	10346000	150	214	147	329;330	679;680;681;682	682	275	4	9606
AIPQLQGYLR	0	1	Unmodified	1157.6557	0.65569258	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		18.78	18.78	2	0.002896	10467	DP1061-9	96.492	53.893			22.614	24.177	NaN	1	0	Median	275410000	11219000	264190000	151	287	148	331	683;684	684		2	9606
AITGASLADIMAK	1	0	Oxidation (M)	1276.6697	0.66968766	275	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	0	5	0					2	17.296	17.296	2	0.024348	6888	DP1061-10	74.841	32.242			NaN	NaN	NaN	0	0	Median	5102600	0	5102600	152	275	149	332;333	685;686	685	348	2	9606
AITYQIAK	1	0	Unmodified	906.51747	0.51746776	507	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3	0			1			15.128	15.128	2	0.026952	5852	DP1061-8	82.305	39.305			NaN	NaN	NaN	0	0	Median	7830400	0	7830400	153	507	150	334	687	687		1	9606
AIVAGDQNVEYK	1	0	Unmodified	1305.6565	0.65648044	324	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		14.919	14.919	2	0.00054581	5700	DP1061-9	111.61	76.169			1.7131	1.7908	NaN	1	0	Median	18919000	7061100	11858000	154	324	151	335	688;689;690;691	690		4	9606
AIVAIENPADVSVISSR	0	1	Unmodified	1739.9418	0.94176342	1	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		19.395	19.395	2	1.1431E-08	11451	DP1061-9	174.46	133.74			NaN	NaN	NaN	0	0	Median	8902200	0	8902200	155	1	152	336	692;693	692		2	9606
AIVSSGTLGDR	0	1	Unmodified	1074.5669	0.56693715	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	3	0.816		1	1	1		14.598	14.598	2	0.0029196	5272	DP1061-7	109.66	22.188			NaN	NaN	NaN	0	0	Median	66498000	0	66498000	156	289	153	337;338;339	694;695;696;697;698;699	695		6	9606
AKEQEAEPEEQEEDSSSDPR	1	1	Unmodified	2288.9517	0.951672	220	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	1	3	0			1			12.506	12.506	3	0.0023972	2894	DP1061-8	90.765	63.05			NaN	NaN	NaN	0	0	Median	17035000	0	17035000	157	220	154	340	700;701	701		2	9606
ALAAAGYDVEK	1	0	Unmodified	1106.5608	0.56078914	125;110;124	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	0	4	0				2		15.104	15.104	1;2	2.7989E-05	5845	DP1061-9	186.78	128.55			15.596	16.303	NaN	1	0	Median	417780000	24210000	393570000	158	125;110;124	155	341;342	702;703;704;705;706	706		5	9606
ALAAAGYDVEKNNSR	1	1	Unmodified	1577.7798	0.77978347	125;110;124	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				2		13.911	13.911	2;3	1.4492E-10	4336	DP1061-9	142.95	92.794			17.984	18.462	NaN	1	0	Median	126390000	4935300	121460000	159	125;110;124	156	343;344	707;708;709	707		3	9606
ALAVSDLNR	0	1	Unmodified	957.52434	0.52434406	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		15.287	15.287	2	6.1116E-10	5945	DP1061-7	152.47	62.718			1.059	0.94112	11.308	3	0	Plateau	1364300000	693250000	671050000	160	116	157	345;346;347	710;711;712;713;714;715	712		6	9606
ALDTMNFDVIK	1	0	Unmodified	1265.6326	0.63257388	117	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			19.701	19.701	2	0.0046953	10892	DP1061-8	99.688	44.911			NaN	NaN	NaN	0	0	Median	5322200	0	5322200	161	117	158	348	716;717	716		2	9606
ALEDAFLAIDAK	1	0	Unmodified	1275.6711	0.67106787	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3.5	0.5			1	1		20.559	20.559	2	0.0031483	12892	DP1061-9	101.38	50.315			NaN	NaN	NaN	0	0	Median	18430000	0	18430000	162	43	159	349;350	718;719;720;721	721		4	9606
ALEDLAGFK	1	0	Unmodified	962.5073	0.50729701	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					18.139	18.139	2	0.0010216	8323	DP1061-6	124.08	69.874			NaN	NaN	NaN	0	0	Median	15833000	0	15833000	163	182	160	351	722;723	722		2	9606
ALEESNYELEGK	1	0	Unmodified	1380.6409	0.64088996	17	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.71	1.58	1	1	1		4	16.137	16.137	2	6.0577E-05	6457	DP1061-8	118.23	78.166		+	NaN	NaN	NaN	0	0	Median	318340000	318340000	0	164	17	161	352;353;354;355;356;357;358	724;725;726;727;728;729;730;731;732;733;734;735	735		12	9606
ALELTGLK	1	0	Unmodified	843.50657	0.50656873	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3.25	0.829		1	1	2		16.925	16.925	2	3.0178E-05	8077	DP1061-7	145.04	34.433			NaN	NaN	NaN	0	0	Median	347480000	0	347480000	165	134	162	359;360;361;362	736;737;738;739;740	736		5	9606
ALEQIDENLIYWPR	0	1	Unmodified	1758.8941	0.89408495	477	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		22.173	22.173	2	1.5889E-05	14902	DP1061-9	141.08	86.3			NaN	NaN	NaN	0	0	Median	4091500	0	4091500	166	477	163	363	741;742	741		2	9606
ALESSLWELQALQR	0	1	Unmodified	1642.8679	0.8678702	473	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	3	0			1			21.539	21.539	2	6.2732E-05	13291	DP1061-8	147.62	94.499			NaN	NaN	NaN	0	0	Median	13674000	0	13674000	167	473	164	364	743;744	744		2	9606
ALGAQIEK	1	0	Unmodified	828.47052	0.47051757	386	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	2	0		1				12.787	12.787	2	0.0007606	2992	DP1061-7	132.09	10.802			NaN	NaN	NaN	0	0	Median	17036000	0	17036000	168	386	165	365	745	745		1	9606
ALGEPITLFGEGPAER	0	1	Unmodified	1655.8519	0.85188578	46	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			20.627	20.627	2	0.0032713	12009	DP1061-8	91.093	53.154			NaN	NaN	NaN	0	0	Median	23594000	0	23594000	169	46	166	366	746;747	746		2	9606
ALGGEDVR	0	1	Unmodified	815.41373	0.41373097	16	CON__P12763			yes	yes	0	0	0	3	0			1			12.589	12.589	2	0.045062	2973	DP1061-8	85.265	29.239		+	NaN	NaN	NaN	0	0	Median	0	0	0	170	16	167	367	748	748		1	
ALIAAQLDNAIEK	1	0	Unmodified	1368.7613	0.76127986	477	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		18.492	18.492	2	0.01856	10267	DP1061-9	77.64	22.073			NaN	NaN	NaN	0	0	Median	4745000	0	4745000	171	477	168	368	749	749		1	9606
ALIAAQYSGAQVR	0	1	Unmodified	1346.7306	0.73064844	147	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		16.36	16.36	2	5.4666E-06	7433	DP1061-9	128.03	65.732			2.7144	2.9021	NaN	1	0	Median	21064000	6770300	14293000	172	147	169	369	750;751;752;753	750		4	9606
ALLLLPVEQGFTFSGICR	0	1	Unmodified	2020.0816	0.081568145	376	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	3	0			1			24.044	24.044	2	1.6902E-05	16402	DP1061-8	120.57	73.777			NaN	NaN	NaN	0	0	Median	1762500	0	1762500	173	376	170	370	754;755	755		2	9606
ALLTTNQLPQPDVFPLFK	1	0	Unmodified	2041.1248	0.12481317	521	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	3.5	0.5			1	1		23.276	23.276	2	4.434E-07	16165	DP1061-9	123.28	83.209			NaN	NaN	NaN	0	0	Median	9663300	0	9663300	174	521	171	371;372	756;757;758;759	759		4	9606
ALNEINQFYQK	1	0	Unmodified	1366.6881	0.68811492	9	CON__P02663			yes	yes	0	0	0	2	0		1				17.654	17.654	2	0.013461	9268	DP1061-7	104.2	40.782		+	NaN	NaN	NaN	0	0	Median	12543000	12543000	0	175	9	172	373	760	760		1	
ALPASETPK	1	0	Unmodified	912.49165	0.49164694	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			12.511	12.511	2	0.044563	2821	DP1061-8	73.665	14.883			NaN	NaN	NaN	0	0	Median	60616000	0	60616000	176	69	173	374	761	761		1	9606
ALQEFDLALR	0	1	Unmodified	1174.6346	0.63462279	448	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	2	0		1				19.746	19.746	2	0.0075037	11437	DP1061-7	96.331	28.339			NaN	NaN	NaN	0	0	Median	10110000	0	10110000	177	448	174	375	762;763	763		2	9606
ALQEGAEIVVCTPGR	0	1	Unmodified	1598.8086	0.80864076	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				17.228	17.228	2	0.0011241	8623	DP1061-7	101.53	63.836			NaN	NaN	NaN	0	0	Median	10404000	0	10404000	178	402	175	376	764;765	765		2	9606
ALQLLQMYYEGR	0	1	Unmodified	1483.7493	0.74933497	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				21.239	21.239	2	0.0028519	13465	DP1061-7	103.34	46.779			NaN	NaN	NaN	0	0	Median	3269300	0	3269300	179	485	176	377	766;767	767		2	9606
ALQQEQEIEQR	0	1	Unmodified	1370.679	0.6790068	403	Q8WXI9;Q86YP4	GATAD2B;GATAD2A	Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha	yes	no	0	0	0	3	0			1			14.033	14.033	2	0.0012004	4726	DP1061-8	117.7	37.713			NaN	NaN	NaN	0	0	Median	9381500	0	9381500	180	403	177	378	768;769	768		2	9606
ALQQLEK	1	0	Unmodified	828.47052	0.47051757	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				12.787	12.787	2	0.0046339	2983	DP1061-7	110.61	3.2944			NaN	NaN	NaN	0	0	Median	17036000	0	17036000	181	347	178	379	770	770		1	9606
ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK	1	1	Unmodified	2964.5417	0.54173204	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	2	0		1				15.9	15.9	3	2.1746E-07	6731	DP1061-7	88.518	65.454			NaN	NaN	NaN	0	0	Median	12021000	0	12021000	182	347	179	380	771;772;773	771		3	9606
ALQSYYEAK	1	0	Unmodified	1071.5237	0.52367535	474	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	2	0		1				14.944	14.944	2	0.022154	5723	DP1061-7	82.279	26.909			NaN	NaN	NaN	0	0	Median	12324000	0	12324000	183	474	180	381	774	774		1	9606
ALSQAAVEEEEEEEEEEEPAQGK	1	0	Unmodified	2559.0984	0.098395818	373	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	1.33	0.471	2	1				16.917	16.917	2	2.3552E-34	8183	DP1061-7	214.89	147.24			NaN	NaN	NaN	0	0	Median	12684000	0	12684000	184	373	181	382;383;384	775;776;777;778	778		4	9606
ALSSSVIR	0	1	Unmodified	831.48142	0.48141661	420	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		13.985	13.985	2	0.050054	4513	DP1061-9	73.26	1.9643			NaN	NaN	NaN	0	0	Median	12297000	0	12297000	185	420	182	385	779	779		1	9606
ALTSADGASEEQSQNDEDNQGSEK	1	0	Unmodified	2509.0324	0.032441518	435	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	4	0				1		13.307	13.307	2	8.984199999999999E-28	3725	DP1061-9	201.72	181.89			NaN	NaN	NaN	0	0	Median	4952300	0	4952300	186	435	183	386	780;781;782	781		3	9606
ALTSFLPAPTQLSQDQLEAEEK	1	0	Acetyl (Protein N-term)	2457.2275	0.22749992	321	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	0	3	0			2			24.647	24.647	2;3	9.3859E-38	16953	DP1061-8	234.21	204.3			NaN	NaN	NaN	0	0	Median	26644000	0	26644000	187	321	184	387;388	783;784;785;786;787;788;789	784		7	9606
ALTSFLPAPTQLSQDQLEAEEKAR	1	1	Acetyl (Protein N-term)	2684.3657	0.36572473	321	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	1	3	0			1			22.634	22.634	3	2.6782E-05	14676	DP1061-8	109.85	81.266			NaN	NaN	NaN	0	0	Median	4655200	0	4655200	188	321	185	389	790;791;792;793;794;795	792		6	9606
ALTVAHELLCNKPEEEK	2	0	Unmodified	1979.9986	0.99862638	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				15.681	15.681	3	4.63E-16	6504	DP1061-7	205.28	165.76			NaN	NaN	NaN	0	0	Median	45440000	0	45440000	189	289	186	390	796;797	797		2	9606
ALTVPELTQQMFDAK	1	0	Unmodified	1690.86	0.86000763	265;81;320	P68371;Q13509;P04350	TUBB4B;TUBB3;TUBB4A	Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	0	0	3.67	0.471			1	2		21.533	21.533	2;3	4.302E-37	14102	DP1061-9	193.28	193.28			3.6041	3.7675	NaN	1	0	Median	63726000	5498600	58227000	190	265;320;81	187	391;392;393	798;799;800;801;802;803;804;805	802		8	9606
ALTVPELTQQMFDAK	1	0	Oxidation (M)	1706.8549	0.85492225	265;81;320	P68371;Q13509;P04350	TUBB4B;TUBB3;TUBB4A	Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	0	4	0				2		19.193	19.193	2;3	0.002413	11271	DP1061-9	80.534	19.437			4.1563	4.3446	NaN	1	0	Median	95491000	19555000	75937000	191	265;320;81	187	394;395	806;807	807	80	2	9606
ALTVPELTQQMFDSK	1	0	Oxidation (M)	1722.8498	0.84983687	328	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	1	0	4	0				1		19.076	19.076	2	3.0615E-05	10981	DP1061-9	143	106.31			NaN	NaN	NaN	0	0	Median	8704800	0	8704800	192	328	188	396	808;809	808	430	2	9606
ALTVPELTQQVFDAK	1	0	Unmodified	1658.8879	0.88793694	98	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			2	2		21.24	21.24	2;3	8.0626E-20	13781	DP1061-9	167.22	133.96			3.8587	4.0336	10.691	3	0	Median	246870000	49705000	197160000	193	98	189	397;398;399;400	810;811;812;813;814;815;816;817;818;819;820	820		11	9606
ALVATPGKK	2	0	Unmodified	883.5491	0.54910224	134	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				12.397	12.397	2	0.015561	2481	DP1061-7	116.37	78.644			NaN	NaN	NaN	0	0	Median	54360000	0	54360000	194	134	190	401	821	821		1	9606
ALVENCLVPDLWIR	0	1	Unmodified	1696.8971	0.89706184	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				22.793	22.793	2	0.00033443	15267	DP1061-7	114.82	68.847			NaN	NaN	NaN	0	0	Median	3518600	0	3518600	195	347	191	402	822;823	822		2	9606
ALVNCQYSSATFSTGER	0	1	Unmodified	1889.8578	0.8577758	503	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	5	0					1	19.689	19.689	2	0.0015905	8836	DP1061-10	106.54	63.041			NaN	NaN	NaN	0	0	Median	0	0	0	196	503	192	403	824	824		1	9606
ALVNQLHER	0	1	Unmodified	1078.5883	0.5883413	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.17	0.373			5	1		13.843	13.843	2;3	1.376E-32	3793	DP1061-8	188.98	148.2			0.93542	0.97591	9.8438	3	0	Plateau	287850000	146720000	141130000	197	501	193	404;405;406;407;408;409	825;826;827;828;829;830;831;832;833;834;835;836;837;838;839	828		15	9606
ALVQNDTLLQVK	1	0	Unmodified	1340.7664	0.76636524	434	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	5	0					1	22.313	22.313	2	0.0033199	10802	DP1061-10	100.25	56.611			NaN	NaN	NaN	0	0	Median	10548000	0	10548000	198	434	194	410	840;841;842	841		3	9606
ALYDTFSAFGNILSCK	1	0	Unmodified	1805.8658	0.86582129	117	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			23.307	23.307	2	4.7774E-08	15446	DP1061-8	135.94	86.52			NaN	NaN	NaN	0	0	Median	4360300	0	4360300	199	117	195	411	843;844	843		2	9606
AMFLQPDLDSLVDFSTNNQK	1	0	Oxidation (M)	2298.0838	0.083812569	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2.5	0.5		1	1			22.581	22.581	2	0.0037924	14683	DP1061-8	95.651	64.745			NaN	NaN	NaN	0	0	Median	13189000	0	13189000	200	466	196	412;413	845;846;847	847	559	3	9606
AMGEQAVALAR	0	1	Oxidation (M)	1131.5706	0.57064232	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.75	1.09	1		2	1		14.224	14.224	2	0.00042579	4692	DP1061-8	113.66	73.591			0.94741	1.0245	2.9703	4	0	Median	682620000	339540000	343080000	201	86	197	414;415;416;417	848;849;850;851;852;853;854;855;856;857;858;859;860	853	90	13	9606
AMGEQAVALAR	0	1	Unmodified	1115.5757	0.5757277	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			15.989	15.989	2	0.00054601	6564	DP1061-8	113.26	63.129			0.90055	0.96571	NaN	1	0	Median	46694000	24370000	22325000	202	86	197	418	861;862	861		2	9606
AMGIMNSFVNDIFER	0	1	2 Oxidation (M)	1774.8018	0.80184082	57;96	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	2	0	5	0					7	27.545	27.545	2	4.6892E-35	14684	DP1061-10	245.13	199.3			12.134	11.851	NaN	1	0	Median	309490000	11001000	298490000	203	57;96	198	419;420;421;422;423;424;425	863;864;865;866;867;868;869;870;871;872;873;874;875;876;877	866	57;58	15	9606
AMGIMNSFVNDIFER	0	1	Oxidation (M)	1758.8069	0.8069262	57;96	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	1	0	5	0					1	26.671	26.671	2	0.046828	15467	DP1061-10	66.267	28.841			NaN	NaN	NaN	0	0	Median	0	0	0	204	57;96	198	426	878	878	57;58	1	9606
AMLSGPGQFAENETNEVNFR	0	1	Oxidation (M)	2226.0011	0.0011455721	355	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	1	0	5	0					2	21.478	21.478	2	8.8607E-08	10278	DP1061-10	132.65	84.418			NaN	NaN	NaN	0	0	Median	4532600	0	4532600	205	355	199	427;428	879;880;881	880	464	3	9606
AMLTPKPAGGDEKDIK	3	0	Oxidation (M)	1685.8658	0.86582129	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	2	0		2				12.466	12.466	3;4	0.03581	2601	DP1061-7	89.466	46.657			NaN	NaN	NaN	0	0	Median	22920000	0	22920000	206	182	200	429;430	882;883;884	883		3	9606
AMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTR	0	1	3 Oxidation (M)	3835.9522	0.95221682	145	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	3	0	3	0			1			21.814	21.814	3	0.0053833	13595	DP1061-8	45.192	31.529			NaN	NaN	NaN	0	0	Median	4581200	0	4581200	207	145	201	431	885	885	191;192;193	1	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Oxidation (M)	2533.118	0.11796624	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		18.948	18.948	2;3	3.5022E-111	9974	DP1061-8	246.66	233.86			0.85772	0.89925	6.239	3	0	Plateau	245050000	127000000	118050000	208	455	202	432;433;434	886;887;888;889;890;891;892;893;894;895;896;897;898;899;900	893	535	15	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Unmodified	2517.1231	0.12305162	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			19.708	19.708	3	2.3309E-08	11032	DP1061-8	88.945	77.84			0.81139	0.87747	NaN	1	0	Median	27716000	13715000	14000000	209	455	202	435	901;902	902		2	9606
ANCIDSTASAEAVFASEVK	1	0	Unmodified	1968.9099	0.90987095	136	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		19.677	19.677	2	6.718E-13	11819	DP1061-9	167.37	120.39			NaN	NaN	NaN	0	0	Median	11401000	0	11401000	210	136	203	436	903;904	904		2	9606
ANCIDSTASAEAVFASEVKK	2	0	Unmodified	2097.0048	0.0048339665	136	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		18.277	18.277	3	0.0073533	10000	DP1061-9	71.894	48.565			NaN	NaN	NaN	0	0	Median	11482000	0	11482000	211	136	204	437	905;906	906		2	9606
ANELPQPPVPEPANAGK	1	0	Unmodified	1727.8842	0.88424855	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.005	17.005	2	0.0030243	8337	DP1061-7	94.122	43.33			NaN	NaN	NaN	0	0	Median	7099400	7099400	0	212	269	205	438	907;908	908		2	9606
ANPFGGASHAK	1	0	Unmodified	1055.5148	0.514842	237	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	12.439	12.439	2	0.018759	2934	DP1061-10	81.525	36.833			NaN	NaN	NaN	0	0	Median	29128000	0	29128000	213	237	206	439	909	909		1	9606
APAMFNIR	0	1	Unmodified	918.47456	0.47455709	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.313	17.313	2	0.034654	8917	DP1061-9	76.847	54.715			NaN	NaN	NaN	0	0	Median	11259000	0	11259000	214	226	207	440	910	910		1	9606
APAMQPAEIQFAQR	0	1	Oxidation (M)	1572.7719	0.77186132	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.75	0.829		2	1	1		16.465	16.465	2;3	6.6729E-06	7364	DP1061-7	166.69	142.94			NaN	NaN	NaN	0	0	Median	113160000	0	113160000	215	339	208	441;442;443;444	911;912;913;914;915;916;917;918	912	445	8	9606
APEPPPALIVR	0	1	Unmodified	1158.6761	0.67609367	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1	0	1					17.185	17.185	2	0.043111	7201	DP1061-6	72.23	42.063			NaN	NaN	NaN	0	0	Median	7385800	0	7385800	216	497	209	445	919	919		1	9606
APEPTPQQVAQQQ	0	0	Unmodified	1420.6947	0.69465686	343	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	0	1					15.358	15.358	2	0.0039261	5105	DP1061-6	108.43	40.727			NaN	NaN	NaN	0	0	Median	0	0	0	217	343	210	446	920	920		1	9606
APGAEEDDSELQR	0	1	Unmodified	1415.6165	0.61646612	370	Q53F19	C17orf85	Uncharacterized protein C17orf85	yes	yes	0	0	0	4.33	0.943			1		2	13.753	13.753	2	3.2151E-05	4443	DP1061-10	133.81	108.95			NaN	NaN	NaN	0	0	Median	7526500	0	7526500	218	370	211	447;448;449	921;922;923;924;925;926	923		6	9606
APGAGLGQDR	0	1	Unmodified	940.47264	0.47264284	202	P50402	EMD	Emerin	yes	yes	0	0	0	5	0					2	12.579	12.579	2	0.002732	3142	DP1061-10	126.52	85.798			NaN	NaN	NaN	0	0	Median	0	0	0	219	202	212	450;451	927;928	927		2	9606
APGEQTVPALNLQNAFR	0	1	Unmodified	1824.9482	0.94824579	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					20.231	20.231	2	2.8911E-08	10815	DP1061-6	166.11	116.66			NaN	NaN	NaN	0	0	Median	8177800	0	8177800	220	559	213	452	929;930;931;932	931		4	9606
APGTPHSHTKPYVR	1	1	Unmodified	1546.8005	0.80045934	294	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					4	21.924	21.924	3	0.00051573	2915	DP1061-10	101.39	50.379			NaN	NaN	NaN	0	0	Median	26175000	0	26175000	221	294	214	453;454;455;456	933;934;935;936;937;938	933		6	9606
APIDTSDVEEK	1	0	Unmodified	1202.5667	0.56666238	292	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	3	0			1			14.091	14.091	2	0.00022157	4840	DP1061-8	128.86	83.522			NaN	NaN	NaN	0	0	Median	9762800	0	9762800	222	292	215	457	939;940;941	940		3	9606
APILIATDVASR	0	1	Unmodified	1225.703	0.7030367	130;440	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3	0			5			27.03	27.03	2	0.00050205	8476	DP1061-8	119.68	72.789			NaN	NaN	NaN	0	0	Median	80214000	0	80214000	223	130;440	216	458;459;460;461;462	942;943;944;945;946;947;948;949	943		8	9606
APIRPDIVNFVHTNLR	0	2	Unmodified	1861.0323	0.032250187	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		18.378	18.378	2;3	1.1851E-07	10087	DP1061-9	174.72	131.88			NaN	NaN	NaN	0	0	Median	200590000	0	200590000	224	162	217	463;464	950;951;952	952		3	9606
APQVLVLAPTR	0	1	Unmodified	1163.7026	0.70264277	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2.33	1.25	1	1		1		17.635	17.635	2	0.00018993	9086	DP1061-7	142.83	98.38			NaN	NaN	NaN	0	0	Median	98046000	0	98046000	225	508	218	465;466;467	953;954;955;956;957;958	957		6	9606
APQVVAEAAK	1	0	Unmodified	982.54475	0.54474515	58	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	3	0			1			12.891	12.891	2	0.05393	3329	DP1061-8	70.552	26.174			NaN	NaN	NaN	0	0	Median	16101000	0	16101000	226	58	219	468	959	959		1	9606
APSLTNDEVEEFR	0	1	Unmodified	1505.6998	0.69980182	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				17.709	17.709	2	0.00032118	9348	DP1061-7	141.89	89.719			NaN	NaN	NaN	0	0	Median	17799000	0	17799000	227	313	220	469	960	960		1	9606
APSTYGGGLSVSSSR	0	1	Unmodified	1424.6896	0.68957148	7	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1	0	2					15.134	15.134	2	7.3582E-09	4904	DP1061-6	184.87	119.71		+	NaN	NaN	NaN	0	0	Median	0	0	0	228	7	221	470;471	961;962	961		2	9606
APSYLEISSMR	0	1	Oxidation (M)	1268.6071	0.60708741	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	0	2	0		1				16.753	16.753	2	0.002525	7997	DP1061-7	90.827	46.074			1.2406	1.3688	NaN	1	0	Median	33315000	14175000	19139000	229	269	222	472	963;964;965	964	335	3	9606
AQALEDLAGFK	1	0	Unmodified	1161.603	0.60298831	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1.5	0.5	1	1				18.692	18.692	2	0.0012831	10213	DP1061-7	117.31	75.882			NaN	NaN	NaN	0	0	Median	24282000	0	24282000	230	182	223	473;474	966;967;968;969	968		4	9606
AQALEELTGFR	0	1	Unmodified	1233.6354	0.63535107	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0.816		1	1	1		19.019	19.019	2	0.00016773	10502	DP1061-7	131.5	89.313			NaN	NaN	NaN	0	0	Median	28030000	0	28030000	231	182	224	475;476;477	970;971;972;973;974;975	971		6	9606
AQAVHPGYGFLSENK	1	0	Unmodified	1616.7947	0.79470526	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			4			16.503	16.503	2;3	0.0010749	7186	DP1061-8	101.89	80.015			0.84715	0.90489	NaN	1	0	Median	72032000	45582000	26450000	232	86	225	478;479;480;481	976;977;978;979	977		4	9606
AQAVHPGYGFLSENKEFAR	1	1	Unmodified	2120.0439	0.043937085	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.29	0.452			5	2		17.087	17.087	3;4	2.1726E-17	7522	DP1061-8	148.36	148.36			0.88582	0.92375	4.8782	5	0	Linear	317090000	158570000	158520000	233	86	226	482;483;484;485;486;487;488	980;981;982;983;984;985;986;987;988;989;990;991;992;993;994;995;996;997	984		17	9606
AQAVSEDAGGNEGR	0	1	Unmodified	1359.6015	0.60148476	224	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		1				12.399	12.399	2	1.2944E-05	2516	DP1061-7	131.12	105.73			NaN	NaN	NaN	0	0	Median	5798600	0	5798600	234	224	227	489	998;999	998		2	9606
AQAVSEEEEEEEGKSSSPK	2	0	Unmodified	2048.9022	0.90220261	484	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	1	2	0		1				12.609	12.609	3	2.7778E-16	2781	DP1061-7	182.91	158.5			NaN	NaN	NaN	0	0	Median	5095700	0	5095700	235	484	228	490	1000;1001	1000		2	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term);Oxidation (M)	1459.6362	0.6361557	258	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	1	5	0					1	12.419	12.419	2	0.00082037	2927	DP1061-10	89.356	76.86			7.3784	7.8921	NaN	1	0	Median	58882000	5609100	53273000	236	258	229	491	1002;1003;1004	1003	315	3	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term)	1443.6412	0.64124108	258	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	5	0					2	13.492	13.492	2	2.0488E-05	3962	DP1061-10	123.01	123.01			9.4615	10.12	NaN	1	0	Median	11825000	1354800	10470000	237	258	229	492;493	1005;1006;1007;1008;1009	1006		5	9606
AQEGPDAEIIGGER	0	1	Unmodified	1440.6845	0.68448611	54	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					15.906	15.906	2	0.0020402	5728	DP1061-6	98.156	41.725			NaN	NaN	NaN	0	0	Median	7873500	0	7873500	238	54	230	494	1010;1011	1011		2	9606
AQEIAMQNR	0	1	Unmodified	1059.5131	0.51312744	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	13.339	13.339	2	2.8507E-22	3307	DP1061-8	178.08	137.98			0.9246	1.0254	10.265	4	0	Linear	383050000	199420000	183620000	239	501	231	495;496;497;498	1012;1013;1014;1015;1016;1017;1018;1019;1020;1021	1017		10	9606
AQEPESGLSEETQVK	1	0	Unmodified	1630.7686	0.76860967	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.681	14.681	2	2.3061E-05	4433	DP1061-6	149.23	109.44			NaN	NaN	NaN	0	0	Median	5607600	0	5607600	240	271	232	499	1022;1023;1024	1022		3	9606
AQFEGIVTDLIR	0	1	Unmodified	1360.7351	0.73506511	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.33	21.33	2	5.5933E-17	12951	DP1061-8	163.88	122.43			1.8756	1.9924	NaN	1	0	Median	86338000	26367000	59971000	241	166	233	500;501	1025;1026;1027;1028;1029;1030	1026		6	9606
AQGPQQQPGSEGPSYAK	1	0	Unmodified	1728.8067	0.80672651	369	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				2		13.226	13.226	2	1.5914E-08	3640	DP1061-9	161.25	87.755			NaN	NaN	NaN	0	0	Median	0	0	0	242	369	234	502;503	1031;1032	1032		2	9606
AQIFANTVDNAR	0	1	Unmodified	1318.663	0.6629628	92	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		15.972	15.972	2	0.0007222	6988	DP1061-9	109.83	68.948			1.9102	2.0423	NaN	1	0	Median	15325000	4744400	10580000	243	92	235	504	1033;1034	1034		2	9606
AQIHDLVLVGGSTR	0	1	Unmodified	1464.8049	0.80487601	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.5	0.5			1	1		16.73	16.73	2	0.016881	7556	DP1061-8	77.597	77.597			NaN	NaN	NaN	0	0	Median	37361000	0	37361000	244	108	236	505;506	1035;1036	1035		2	9606
AQLEQSVEENKER	1	1	Unmodified	1558.7587	0.75871368	456	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				12.71	12.71	3	0.00022576	2951	DP1061-7	114.24	83.676			NaN	NaN	NaN	0	0	Median	10705000	0	10705000	245	456	237	507	1037	1037		1	9606
AQPGTLNLNNEVVK	1	0	Acetyl (Protein N-term)	1537.81	0.81002097	419	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	1	0	0	4	0				1		19.291	19.291	2	0.00056011	11261	DP1061-9	94.82	50.395			NaN	NaN	NaN	0	0	Median	5428300	0	5428300	246	419	238	508	1038;1039	1039		2	9606
AQQQEEQGSVNDVKEEEKEEK	3	0	Unmodified	2460.1252	0.12521969	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	2	2	0		1				12.705	12.705	4	0.0030619	2838	DP1061-7	83.666	65.313			NaN	NaN	NaN	0	0	Median	11829000	0	11829000	247	558	239	509	1040;1041	1040		2	9606
AQSLVISPPAPSPR	0	1	Unmodified	1418.7882	0.78816332	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	1.22	2	1		1		16.997	16.997	2	1.4277E-05	7034	DP1061-6	129.74	92.193			NaN	NaN	NaN	0	0	Median	46061000	0	46061000	248	182	240	510;511;512;513	1042;1043;1044;1045;1046;1047;1048;1049	1042		8	9606
AQVAMSTLPVEDEESSESR	0	1	Acetyl (Protein N-term);Oxidation (M)	2121.9372	0.93720791	269	P78347	GTF2I	General transcription factor II-I	yes	yes	1	1	0	2	0		1				18.68	18.68	2	8.1291E-13	10185	DP1061-7	138.21	103.21			0.80905	0.91616	NaN	1	0	Median	13666000	5661000	8005300	249	269	241	514	1050;1051;1052;1053	1051	336	4	9606
AQVIYTR	0	1	Unmodified	849.47085	0.47085192	251	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	13.3	13.3	2	3.1452E-05	3857	DP1061-10	124.37	68.252			17.027	16.63	NaN	1	0	Median	70971000	3054400	67916000	250	251	242	515	1054;1055	1055		2	9606
AQVVHLLSTMDSPAST	0	0	Oxidation (M)	1671.8138	0.81378572	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.037	17.037	2	2.4643E-07	7044	DP1061-6	150.09	96.97			NaN	NaN	NaN	0	0	Median	0	0	0	251	34	243	516	1056;1057	1057	27	2	9606
AQYEDIAQK	1	0	Unmodified	1064.5138	0.51383895	80	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	3.5	1.12		1	1	1	1	13.671	13.671	2	0.023863	4216	DP1061-8	80.438	41.476		+	NaN	NaN	NaN	0	0	Median	199150000	199150000	0	252	80	244	517;518;519;520	1058;1059;1060;1061;1062;1063	1062		6	9606
AQYEEIANR	0	1	Unmodified	1092.52	0.51998696	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	1	0	1					13.974	13.974	2	0.00036558	3697	DP1061-6	132.08	50.894		+	NaN	NaN	NaN	0	0	Median	15576000	15576000	0	253	18	245	521	1064;1065	1064		2	9606
AQYEEIAQR	0	1	Unmodified	1106.5356	0.53563702	20	CON__P35908v2;P35908;CON__P35908;Q01546;CON__P19013;P19013	KRT2;KRT76;KRT4	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 4	no	no	0	0	0	2.25	1.09	1	2		1		14.085	14.085	2	0.00047079	3789	DP1061-6	148.04	76.747		+	NaN	NaN	NaN	0	0	Median	88010000	88010000	0	254	20	246	522;523;524;525	1066;1067;1068;1069;1070	1067		5	9606
ARFEELCSDLFR	0	2	Unmodified	1541.7297	0.72966216	108;128	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3	0			1			19.159	19.159	2	0.0067649	10185	DP1061-8	147.28	115.22			NaN	NaN	NaN	0	0	Median	44748000	0	44748000	255	128;108	247	526	1071;1072	1072		2	9606
ARFEELNADLFR	0	2	Unmodified	1479.747	0.74702678	113	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			2			18.884	18.884	2;3	0.00069016	9894	DP1061-8	108.59	108.59			NaN	NaN	NaN	0	0	Median	81614000	0	81614000	256	113	248	527;528	1073;1074;1075;1076	1074		4	9606
ASAQDAGDHVQPPEGR	0	1	Unmodified	1633.7445	0.7444606	445	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4	0				1		12.595	12.595	3	2.8072E-05	2863	DP1061-9	114.31	91.455			NaN	NaN	NaN	0	0	Median	12143000	0	12143000	257	445	249	529	1077;1078	1077		2	9606
ASAVSPANLPAVLLQPR	0	1	Acetyl (Protein N-term)	1744.9836	0.98356866	207	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	2.5	0.5		1	1			23.989	23.989	2	1.0606E-08	16424	DP1061-7	164.04	119.42			NaN	NaN	NaN	0	0	Median	8716900	0	8716900	258	207	250	530;531	1079;1080;1081	1079		3	9606
ASEAQPPVAR	0	1	Unmodified	1024.5302	0.53015772	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0.816			1	1	1	12.44	12.44	2	0.00043041	2769	DP1061-8	143.28	87.915			NaN	NaN	NaN	0	0	Median	56545000	0	56545000	259	318	251	532;533;534	1082;1083;1084;1085;1086	1084		5	9606
ASEIMVDDEELAQHPATTEDIR	0	1	Oxidation (M)	2485.1279	0.12786223	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	2.67	0.943		2		1		16.988	16.988	2;3	0.00021823	8312	DP1061-7	95.067	74.007			NaN	NaN	NaN	0	0	Median	16764000	0	16764000	260	407	252	535;536;537	1087;1088;1089;1090;1091	1090	505	5	9606
ASFVTEVLAHSGR	0	1	Acetyl (Protein N-term)	1414.7205	0.72047768	47	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	1	0	0	2	0		1				22.707	22.707	2	0.0015522	15161	DP1061-7	104.07	68.801			NaN	NaN	NaN	0	0	Median	0	0	0	261	47	253	538	1092	1092		1	9606
ASGDLIPWTVSEQFQDPDFGGLSGGR	0	1	Unmodified	2735.2827	0.28272339	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				23.605	23.605	2	0.00070005	16103	DP1061-7	92.439	66.291			NaN	NaN	NaN	0	0	Median	2956500	0	2956500	262	485	254	539	1093;1094	1093		2	9606
ASGGLPQFGDEYDFYR	0	1	Unmodified	1820.8006	0.8005785	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				20.785	20.785	2	0.0011889	12768	DP1061-7	99.669	75.393			NaN	NaN	NaN	0	0	Median	14786000	0	14786000	263	284	255	540	1095	1095		1	9606
ASGNYATVISHNPETK	1	0	Unmodified	1687.8166	0.81656291	259	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	5	0					3	21.184	21.184	2;3	1.1283E-07	9913	DP1061-10	128.74	128.74			NaN	NaN	NaN	0	0	Median	21455000	0	21455000	264	259	256	541;542;543	1096;1097;1098;1099;1100;1101;1102;1103	1102		8	9606
ASGPPVSELITK	1	0	Unmodified	1197.6605	0.66050319	125;110;124	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	no	no	0	0	0	4	0				1		16.81	16.81	2	0.039465	7791	DP1061-9	59.265	20.697			13.491	14.102	NaN	1	0	Median	218560000	16122000	202440000	265	125;110;124	257	544	1104;1105	1105		2	9606
ASIQAASAESSGQK	1	0	Unmodified	1333.6474	0.64737232	374	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2	0		1				12.467	12.467	2	0.0074819	2582	DP1061-7	87.216	36.743			NaN	NaN	NaN	0	0	Median	6094400	0	6094400	266	374	258	545	1106;1107	1106		2	9606
ASITPGTILIILTGR	0	1	Unmodified	1524.9239	0.92392852	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				2		24.747	24.747	2	5.036E-06	17528	DP1061-9	132.56	96.037			NaN	NaN	NaN	0	0	Median	28768000	0	28768000	267	287	259	546;547	1108;1109;1110;1111	1108		4	9606
ASKEMFEDTVEER	1	1	Acetyl (Protein N-term);Oxidation (M)	1627.7036	0.70356657	363	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	1	1	1	4	0				1		16.175	16.175	2	0.023435	7241	DP1061-9	65.842	14.406			NaN	NaN	NaN	0	0	Median	0	0	0	268	363	260	548	1112	1112	478	1	9606
ASMQQQQQLASAR	0	1	Oxidation (M)	1461.6994	0.69942466	556	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	5	0					1	12.495	12.495	2	5.6568E-35	3043	DP1061-10	197.07	126.16			3.0542	2.983	NaN	1	0	Median	21948000	4348400	17600000	269	556	261	549	1113;1114;1115	1113	650	3	9606
ASNGDAWVEAHGK	1	0	Unmodified	1340.6109	0.61092723	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			2			13.482	13.482	2;3	4.0136E-05	4047	DP1061-8	131.83	81.719			1.6102	1.7199	NaN	1	0	Median	50659000	15399000	35260000	270	166	262	550;551	1116;1117;1118;1119;1120;1121	1121		6	9606
ASPSPTDPVVPAVPIGPPPAGFR	0	1	Unmodified	2225.1845	0.18445331	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.745	3	2	1			20.71	20.71	2;3	4.463E-27	12407	DP1061-7	155.14	155.14			0.46845	0.47869	5.0115	3	0	Plateau	709330000	472080000	237250000	271	116	263	552;553;554;555;556;557	1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139	1126		18	9606
ASPSPTDPVVPAVPIGPPPAGFRDILLR	0	2	Unmodified	2835.5647	0.56469931	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				21.992	21.992	3	2.8339E-17	14309	DP1061-7	111.67	88.449			0.52489	0.54211	NaN	1	0	Median	13544000	7723800	5820200	272	116	264	558	1140;1141;1142;1143;1144	1141		5	9606
ASQPDLVDTPTSSKPQPK	2	0	Unmodified	1894.9636	0.96362108	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.67	0.745	3	2	1			13.765	13.765	2;3	2.3254E-06	4220	DP1061-7	130.61	82.568			NaN	NaN	NaN	0	0	Median	65201000	0	65201000	273	182	265	559;560;561;562;563;564	1145;1146;1147;1148;1149;1150;1151	1150		7	9606
ASSEGTIPQVQR	0	1	Unmodified	1271.647	0.64697839	474	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				14.259	14.259	2	0.026931	4850	DP1061-7	83.862	33.821			NaN	NaN	NaN	0	0	Median	0	0	0	274	474	266	565	1152	1152		1	9606
ASTEGVAIQGQQGTR	0	1	Unmodified	1501.7485	0.74848335	439	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1	0	1					13.492	13.492	2	0.012088	3231	DP1061-6	80.522	46.561			NaN	NaN	NaN	0	0	Median	2863400	0	2863400	275	439	267	566	1153;1154	1154		2	9606
ATAAETSASEPEAESK	1	0	Acetyl (Protein N-term)	1619.7162	0.71623974	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	1	0	0	2	0		1				14.952	14.952	2	5.4094E-09	5657	DP1061-7	172.76	129.34			NaN	NaN	NaN	0	0	Median	9019200	0	9019200	276	347	268	567	1155;1156;1157	1156		3	9606
ATAGDTHLGGEDFDNR	0	1	Unmodified	1674.7234	0.72339081	108;128	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.5	0.5			2	2		14.548	14.548	2;3	2.5137E-109	5285	DP1061-8	270.93	262.19			10.227	10.431	12.724	3	0	Median	1360400000	124120000	1236200000	277	128;108	269	568;569;570;571	1158;1159;1160;1161;1162;1163;1164;1165;1166;1167;1168;1169;1170	1161		13	9606
ATDLGGTSQAGTSQR	0	1	Unmodified	1448.6855	0.68554874	400	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	2.5	0.5		1	1			12.537	12.537	2	1.891E-05	2711	DP1061-7	168.98	120.38			NaN	NaN	NaN	0	0	Median	6089100	0	6089100	278	400	270	572;573	1171;1172;1173	1172		3	9606
ATDTSQGELVHPK	1	0	Acetyl (Protein N-term)	1423.6943	0.69432251	375	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	1	0	0	3	0			1			14.864	14.864	2	1.6191E-05	5612	DP1061-8	123.51	84.491			NaN	NaN	NaN	0	0	Median	7597800	0	7597800	279	375	271	574	1174;1175	1174		2	9606
ATEEKKPETEAAR	2	1	Acetyl (Protein N-term)	1500.742	0.74200098	231	P61964	WDR5	WD repeat-containing protein 5	yes	yes	1	0	2	4	0				1		12.409	12.409	3	0.044702	2632	DP1061-9	45.28	13.641			NaN	NaN	NaN	0	0	Median	16876000	0	16876000	280	231	272	575	1176;1177	1177		2	9606
ATENDIYNFFSPLNPVR	0	1	Unmodified	1995.969	0.96904081	153;213	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	3.67	0.471			1	2		23.166	23.166	2;3	4.9652E-81	16016	DP1061-9	238.07	238.07			3.819	4.0831	34.176	3	0	Median	97314000	22687000	74627000	281	153;213	273	576;577;578	1178;1179;1180;1181;1182;1183;1184;1185;1186;1187;1188;1189;1190;1191;1192	1186		15	9606
ATFDAISK	1	0	Unmodified	851.43888	0.43888309	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		14.603	14.603	2	0.0052131	5241	DP1061-9	95.909	62.552			9.0235	9.4325	NaN	1	0	Median	77648000	7662900	69985000	282	123	274	579	1193;1194	1194		2	9606
ATFIKVPQNQNGK	2	0	Unmodified	1443.7834	0.78341229	134	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				14.226	14.226	3	0.00061002	4775	DP1061-7	103.44	71.45			NaN	NaN	NaN	0	0	Median	15556000	0	15556000	283	134	275	580	1195;1196	1196		2	9606
ATGRPECFLTIQEGLASK	1	1	Unmodified	1976.999	0.99896073	30	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2	0		1				18.601	18.601	3	0.0075327	10035	DP1061-7	76.768	39.185			NaN	NaN	NaN	0	0	Median	14597000	0	14597000	284	30	276	581	1197;1198	1197		2	9606
ATIFEINASSR	0	1	Unmodified	1207.6197	0.619701	425	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	2	0		1				17.74	17.74	2	0.0018081	9310	DP1061-7	114.86	67.201			NaN	NaN	NaN	0	0	Median	12775000	0	12775000	285	425	277	582	1199;1200	1199		2	9606
ATLLQQR	0	1	Unmodified	828.48175	0.48175096	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					13.365	13.365	2	0.0060427	3084	DP1061-6	106.76	56.641			NaN	NaN	NaN	0	0	Median	33863000	0	33863000	286	182	278	583	1201;1202	1202		2	9606
ATLVDHGIR	0	1	Unmodified	980.54033	0.54032847	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.17	0.373	5	1				13.066	13.066	2;3	2.2234E-15	2662	DP1061-6	166.78	84.478			0.91686	0.95267	14.168	2	0	Median	543670000	292910000	250760000	287	309	279	584;585;586;587;588;589	1203;1204;1205;1206;1207;1208;1209;1210;1211;1212	1205		10	9606
ATLVDHGIRR	0	2	Unmodified	1136.6414	0.6414395	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					12.48	12.48	2;3	5.2977E-06	2064	DP1061-6	114.5	66.923			1.0356	1.1039	33.786	2	0	Median	23674000	12163000	11510000	288	309	280	590;591	1213;1214;1215;1216;1217;1218	1213		6	9606
ATPLAVNSAASLWGPYK	1	0	Acetyl (Protein N-term)	1786.9254	0.92538508	439	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	1	0	0	1	0	2					24.061	24.061	2	0.006514	14499	DP1061-6	81.494	53.58			NaN	NaN	NaN	0	0	Median	0	0	0	289	439	281	592;593	1219;1220	1220		2	9606
ATQMPEGGQGAPPMYQLYK	1	0	2 Oxidation (M)	2097.95	0.94996162	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	1	0	2					16.462	16.462	2	0.0087482	6380	DP1061-6	78.287	45.79			NaN	NaN	NaN	0	0	Median	0	0	0	290	271	282	594;595	1221;1222	1221	340;341	2	9606
ATQQQHDFTLTQTADGR	0	1	Unmodified	1916.8977	0.89766678	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	2					14.811	14.811	2;3	4.337599999999999E-53	4597	DP1061-6	201.4	201.4			5.766	6.449	NaN	1	0	Median	31614000	3608900	28005000	291	271	283	596;597	1223;1224;1225;1226;1227	1224		5	9606
ATQVEPLLPGGATLLQAEEHGGLVR	0	1	Acetyl (Protein N-term)	2597.3813	0.38131522	390	Q6PKG0	LARP1	La-related protein 1	yes	yes	1	0	0	2	0		3				22.701	22.701	2;3	1.7903999999999998E-22	15160	DP1061-7	174.78	135.1			NaN	NaN	NaN	0	0	Median	5574200	0	5574200	292	390	284	598;599;600	1228;1229;1230;1231;1232;1233	1233		6	9606
ATRDELPYTFAAPESYEELR	0	2	Unmodified	2357.1176	0.11755554	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	1	2	0		1				19.646	19.646	3	0.005356	11388	DP1061-7	78.418	42.307			NaN	NaN	NaN	0	0	Median	8613100	0	8613100	293	268	285	601	1234;1235;1236	1234		3	9606
ATSFLLALEPELEAR	0	1	Unmodified	1658.8879	0.88793694	83	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	3	0			1			22.754	22.754	2	6.3619E-05	14751	DP1061-8	119.39	73.478			NaN	NaN	NaN	0	0	Median	3224400	0	3224400	294	83	286	602	1237	1237		1	9606
ATTATMATSGSAR	0	1	Acetyl (Protein N-term);Oxidation (M)	1282.5823	0.58232922	167	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	1	0	4	0				1		13.65	13.65	2	0.00060412	4208	DP1061-9	94.767	50.418			NaN	NaN	NaN	0	0	Median	3234300	0	3234300	295	167	287	603	1238	1238	212	1	9606
AVAFQNPQTHVIENLHAAAYR	0	1	Unmodified	2349.1978	0.19781197	138	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				2		17.294	17.294	3;4	5.4789E-07	8836	DP1061-9	86.213	86.213			1.2469	1.3332	NaN	1	0	Median	27730000	8551300	19179000	296	138	288	604;605	1239;1240;1241	1239		3	9606
AVAGWEEVLR	0	1	Unmodified	1128.5928	0.59275797	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	2	0		1				19.238	19.238	2	0.00026268	10834	DP1061-7	128.12	65.539			NaN	NaN	NaN	0	0	Median	7627600	0	7627600	297	397	289	606	1242;1243	1242		2	9606
AVAILCNHQR	0	1	Unmodified	1180.6135	0.61351019	114	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	2	0		1				13.125	13.125	2	0.030841	3443	DP1061-7	91.9	53.147			NaN	NaN	NaN	0	0	Median	0	0	0	298	114	290	607	1244	1244		1	9606
AVCMLSNTTAIAEAWAR	0	1	Oxidation (M)	1879.8921	0.89205282	264;394	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	1	0	3.25	0.433			6	2		20.879	20.879	2;3	4.9979E-41	11144	DP1061-8	192.68	170.45			3.7146	3.948	30.879	4	0	Linear	220890000	48867000	172030000	299	264;394	291	608;609;610;611;612;613;614;615	1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267;1268	1250	322	24	9606
AVCMLSNTTAIAEAWAR	0	1	Unmodified	1863.8971	0.89713819	264;394	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3.67	0.471			1	2		21.321	21.321	2;3	1.2593E-66	12983	DP1061-8	225.15	202.23			3.0657	3.2768	NaN	1	0	Median	70261000	13555000	56707000	300	264;394	291	616;617;618	1269;1270;1271;1272;1273;1274;1275;1276;1277	1271		9	9606
AVCMLSNTTAVAEAWAR	0	1	Oxidation (M)	1865.8764	0.87640275	465	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	3.33	0.471			2	1		19.054	19.054	2	2.2375E-07	11037	DP1061-9	128.21	80.242			NaN	NaN	NaN	0	0	Median	35739000	6050400	29688000	301	465	292	619;620;621	1278;1279;1280;1281;1282;1283	1283	557	6	9606
AVCMLSNTTAVAEAWAR	0	1	Unmodified	1849.8815	0.88148813	465	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	0	4	0				1		20.466	20.466	2	0.0031947	12986	DP1061-9	93.348	59.458			NaN	NaN	NaN	0	0	Median	7236200	0	7236200	302	465	292	622	1284	1284		1	9606
AVDFAER	0	1	Unmodified	806.39227	0.39226725	259	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	5	0					1	15.112	15.112	2	0.0011553	5235	DP1061-10	101.69	66.585			1.7745	1.7331	NaN	1	0	Median	47102000	25781000	21321000	303	259	293	623	1285;1286;1287	1287		3	9606
AVDIPHMDIEALK	1	0	Oxidation (M)	1466.7439	0.74391524	256	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					1	23.891	23.891	3	0.030024	12614	DP1061-10	55.899	29.188			NaN	NaN	NaN	0	0	Median	22101000	0	22101000	304	256	294	624	1288;1289	1288	313	2	9606
AVDPEDDFQR	0	1	Unmodified	1190.5204	0.52038089	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		15.476	15.476	2	0.00037691	6401	DP1061-9	150.4	134.26			NaN	NaN	NaN	0	0	Median	27589000	0	27589000	305	462	295	625	1290;1291	1291		2	9606
AVEEGLTYK	1	0	Unmodified	1008.5128	0.51277632	373	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				14.528	14.528	2	0.024537	5253	DP1061-7	79.713	30.271			NaN	NaN	NaN	0	0	Median	11508000	0	11508000	306	373	296	626	1292	1292		1	9606
AVFPSIVGRPR	0	2	Unmodified	1197.6982	0.6982261	261;244	P63267;P68133;P68032;P62736;P63261;P60709;Q6S8J3;P0CG38;A5A3E0	ACTG2;ACTA1;ACTC1;ACTA2;ACTG1;ACTB;POTEE;POTEI;POTEF	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F	no	no	0	0	1	4	0				1		16.47	16.47	3	6.7038E-05	7622	DP1061-9	129.85	55.387			NaN	NaN	NaN	0	0	Median	11742000	0	11742000	307	244;261	297	627	1293;1294	1294		2	9606
AVFVDLEPTVIDEVR	0	1	Unmodified	1700.8985	0.89850163	264;394;465	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	4.25	0.829			2	2	4	21.562	21.562	2;3	3.7728E-76	13157	DP1061-8	231.05	231.05			3.0421	3.198	8.604	4	0	Median	882960000	197480000	685470000	308	264;394;465	298	628;629;630;631;632;633;634;635	1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306;1307;1308	1300		13	9606
AVGASFPLYEPAK	1	0	Unmodified	1348.7027	0.70270235	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.779	18.779	2	0.013788	10506	DP1061-7	81.865	50.371			NaN	NaN	NaN	0	0	Median	5374000	0	5374000	309	182	299	636	1309	1309		1	9606
AVGPASILK	1	0	Unmodified	854.52255	0.52255314	72	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	4	0				1		16.041	16.041	2	0.020094	7019	DP1061-9	84.498	35.742			NaN	NaN	NaN	0	0	Median	12970000	0	12970000	310	72	300	637	1310;1311	1311		2	9606
AVGPSSTQLYMVR	0	1	Oxidation (M)	1423.7129	0.71294946	398	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	1	0	2	0		1				16.412	16.412	2	0.042363	7498	DP1061-7	58.699	28.445			0.94587	1.0669	NaN	1	0	Median	8945000	4903000	4041900	311	398	301	638	1312	1312		0	9606
AVGPTAEADKSAAEK	2	0	Unmodified	1443.7205	0.72053726	311	Q13123	IK	Protein Red	yes	yes	0	0	1	3	0			1			12.417	12.417	3	3.6521E-06	2674	DP1061-8	123.1	76.89			1.8974	2.1657	NaN	1	0	Median	43476000	9619300	33856000	312	311	302	639	1313;1314	1314		2	9606
AVGTPGGGGGGAVPGISAMSR	0	1	Oxidation (M)	1770.8683	0.86828091	191	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	1	0	1	0	1					15.716	15.716	2	0.035258	5515	DP1061-6	65.374	31.592			NaN	NaN	NaN	0	0	Median	0	0	0	313	191	303	640	1315	1315		1	9606
AVIGIGIEEEDRK	1	1	Unmodified	1427.762	0.76200815	71	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	1	2	0		1				15.98	15.98	3	0.043074	6956	DP1061-7	56.414	10.523			NaN	NaN	NaN	0	0	Median	0	0	0	314	71	304	641	1316	1316		1	9606
AVLVDLEPGTMDSVR	0	1	Oxidation (M)	1616.808	0.80797206	265;81;368	P68371;Q3ZCM7;P04350	TUBB4B;TUBB8;TUBB4A	Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain	no	no	0	1	0	3.14	0.35			6	1		25.876	25.876	2	1.2215E-05	10076	DP1061-9	121.29	101.68			3.882	4.1275	6.5683	2	0	Median	254860000	49358000	205500000	315	265;368;81	305	642;643;644;645;646;647;648	1317;1318;1319;1320;1321;1322;1323;1324;1325;1326;1327;1328;1329	1328	81	13	9606
AVLVDLEPGTMDSVR	0	1	Unmodified	1600.8131	0.81305744	265;81;368	P68371;Q3ZCM7;P04350	TUBB4B;TUBB8;TUBB4A	Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain	no	no	0	0	0	3.5	0.5			1	1		19.616	19.616	2	0.0024231	11135	DP1061-8	90.434	56.548			2.7234	2.9227	23.292	2	0	Median	67026000	16894000	50131000	316	265;368;81	305	649;650	1330;1331	1330		0	9606
AVNYVGAGTVEFIMDSK	1	0	Oxidation (M)	1815.8713	0.8713006	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		19.583	19.583	2;3	1.4957E-17	10682	DP1061-8	157.5	157.5			0.95144	0.99878	2.9737	3	0	Median	420340000	214080000	206260000	317	455	306	651;652;653	1332;1333;1334;1335;1336;1337;1338;1339;1340;1341;1342	1335	536	11	9606
AVNYVGAGTVEFIMDSK	1	0	Unmodified	1799.8764	0.87638598	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.29	21.29	2	7.5676E-16	12903	DP1061-8	151.66	131.88			0.8442	0.90174	NaN	1	0	Median	62559000	42028000	20531000	318	455	306	654	1343;1344	1343		2	9606
AVPETRPNHTIYINNLNEK	1	1	Acetyl (Protein N-term)	2264.1549	0.1549441	102	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	1	0	1	4	0				1		16.733	16.733	3	0.003724	7928	DP1061-9	77.554	49.487			NaN	NaN	NaN	0	0	Median	8854800	0	8854800	319	102	307	655	1345;1346	1346		2	9606
AVPKEDIYSGGGGGGSR	1	1	Unmodified	1605.7747	0.7746981	312	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	1	4	0				1		13.469	13.469	3	0.0044147	3992	DP1061-9	80.545	53.764			NaN	NaN	NaN	0	0	Median	12947000	0	12947000	320	312	308	656	1347;1348	1348		2	9606
AVPYPQR	0	1	Unmodified	829.44464	0.44463717	10	CON__P02666			yes	yes	0	0	0	1	0	1					13.22	13.22	2	0.0019208	2923	DP1061-6	120.76	84.199		+	NaN	NaN	NaN	0	0	Median	33222000	33222000	0	321	10	309	657	1349;1350	1349		2	
AVQAQGGESQQEAQR	0	1	Unmodified	1585.7445	0.7444606	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.448	12.448	2	0.00037822	2021	DP1061-6	115.57	55.176			NaN	NaN	NaN	0	0	Median	0	0	0	322	346	310	658	1351	1351		1	9606
AVTLDKDAYYR	1	1	Acetyl (Protein N-term)	1355.6721	0.67213051	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	1	1	0	1					17.709	17.709	2	6.4847E-05	7893	DP1061-6	128.28	73.669			NaN	NaN	NaN	0	0	Median	48105000	0	48105000	323	559	311	659	1352;1353	1353		2	9606
AVVEVNIPVESEVNLK	1	0	Unmodified	1737.9513	0.95126548	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				19.45	19.45	2	8.9011E-05	11118	DP1061-7	111.79	53.119			NaN	NaN	NaN	0	0	Median	15914000	0	15914000	324	512	312	660	1354;1355;1356	1354		3	9606
AVVGVVAGGGR	0	1	Unmodified	940.54541	0.54541385	259	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4.5	0.5				1	1	13.993	13.993	2	1.685E-06	5823	DP1061-10	132.08	65.05			25.883	25.279	NaN	1	0	Median	180140000	7617500	172520000	325	259	313	661;662	1357;1358;1359;1360;1361;1362;1363;1364;1365;1366	1362		10	9606
AVVIVDDR	0	1	Unmodified	885.49198	0.4919813	139;352	P23246;Q15233	SFPQ;NONO	Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein	no	no	0	0	0	3	0			1			14.502	14.502	2	0.007882	5278	DP1061-8	111.82	60.85			NaN	NaN	NaN	0	0	Median	28838000	0	28838000	326	139;352	314	663	1367;1368	1367		2	9606
AVVMDLLR	0	1	Oxidation (M)	931.51609	0.51608756	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				17.114	17.114	2	0.020284	6818	DP1061-6	79.451	38.149			0.85103	0.8596	1.7191	2	0	Median	1269000000	669540000	599490000	327	309	315	664;665	1369;1370;1371;1372	1370	379	4	9606
AVVMDLLR	0	1	Unmodified	915.52117	0.52117293	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.063	19.063	2	0.0027743	9327	DP1061-6	102.71	60.239			0.88352	0.92954	NaN	1	0	Median	132690000	65804000	66889000	328	309	315	666;667	1373;1374;1375;1376;1377;1378;1379;1380;1381	1374		9	9606
AVVVNAAQLASYSQSK	1	0	Unmodified	1634.8628	0.86278482	288	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	5	0					1	20.219	20.219	2	0.0022989	9295	DP1061-10	105.65	61.972			NaN	NaN	NaN	0	0	Median	0	0	0	329	288	316	668	1382	1382		1	9606
AYGGAYDVMSSK	1	0	Oxidation (M)	1263.5442	0.5441528	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			14.201	14.201	2	0.0014925	4899	DP1061-8	99.568	99.568			1.053	1.1247	NaN	1	0	Median	117930000	57433000	60501000	330	87	317	669	1383;1384;1385;1386	1383	101	4	9606
AYGVCFVDTSLGK	1	0	Unmodified	1415.6755	0.67550132	214	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	2	0		1				19.092	19.092	2	0.0058783	10744	DP1061-7	90.05	45.187			NaN	NaN	NaN	0	0	Median	3248400	0	3248400	331	214	318	670	1387	1387		1	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Oxidation (M)	2765.2789	0.27890034	264;394	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	1	0	3.5	0.5			1	1		18.775	18.775	3	2.7438E-22	9740	DP1061-8	140.2	113.57			2.7962	2.9547	6.0086	2	0	Median	74533000	16751000	57782000	332	264;394	319	671;672	1388;1389;1390;1391;1392;1393;1394;1395;1396	1390	323	9	9606
AYHEQLTVAEITNACFEPANQMVK	1	0	Oxidation (M)	2779.2946	0.2945504	465	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	4	0				1		18.904	18.904	3	0.0013095	10789	DP1061-9	81.48	61.013			NaN	NaN	NaN	0	0	Median	9889900	0	9889900	333	465	320	673	1397;1398;1399;1400	1397	558	4	9606
AYIAYELNSVQHR	0	1	Unmodified	1562.7841	0.78414057	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.12	0.322	15	2				18.276	18.276	2;3	2.4038E-46	6597	DP1061-6	213.31	213.31			0.91804	0.90689	8.8625	6	0	Linear	508820000	260830000	247980000	334	309	321	674;675;676;677;678;679;680;681;682;683;684;685;686;687;688;689;690	1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439	1404		38	9606
AYNMVDIIHSVVDER	0	1	Oxidation (M)	1775.8512	0.85123386	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		18.435	18.435	3	3.8408E-05	9284	DP1061-8	107.61	107.61			0.98063	1.0462	4.3032	2	0	Median	90971000	45506000	45465000	335	87	322	691;692	1440;1441;1442;1443;1444;1445;1446;1447	1440	102	8	9606
AYPYSQTGDDK	1	0	Unmodified	1243.5357	0.5356966	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				13.577	13.577	2	0.017615	3920	DP1061-7	82.494	56.389			NaN	NaN	NaN	0	0	Median	5530800	0	5530800	336	289	323	693	1448	1448		1	9606
AYPYSQTGDDKVR	1	1	Unmodified	1498.7052	0.70522155	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				13.569	13.569	3	2.2041E-05	3983	DP1061-7	142.97	117.27			NaN	NaN	NaN	0	0	Median	37250000	0	37250000	337	289	324	694	1449;1450	1449		2	9606
AYSEALAAFGNGALFVEK	1	0	Unmodified	1856.9309	0.93086439	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			21.924	21.924	2;3	5.1717E-67	14142	DP1061-7	226.23	208.49			0.9053	0.94851	4.9081	3	0	Median	164050000	81541000	82514000	338	116	325	695;696;697	1451;1452;1453;1454;1455;1456;1457;1458;1459	1451		8	9606
AYSEVDGQVFQGR	0	1	Unmodified	1454.679	0.6790068	557	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	2	0		1				16.718	16.718	2	0.0025464	8014	DP1061-7	98.943	64.222			NaN	NaN	NaN	0	0	Median	8655400	0	8655400	339	557	326	698	1460;1461	1461		2	9606
AYTGFSSNSER	0	1	Unmodified	1217.5313	0.53127993	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3.5	0.5			1	1		14.053	14.053	2	0.00027333	4585	DP1061-9	126.31	105.37			NaN	NaN	NaN	0	0	Median	36216000	0	36216000	340	43	327	699;700	1462;1463;1464	1464		3	9606
AYVEANQMLGDLIK	1	0	Oxidation (M)	1579.7916	0.79159371	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			18.741	18.741	2	1.1554E-12	10094	DP1061-7	151.79	121.06			0.85677	0.90637	6.9679	2	0	Median	326290000	166460000	159830000	341	116	328	701;702;703	1465;1466;1467;1468;1469;1470	1466	145	5	9606
AYVEANQMLGDLIK	1	0	Unmodified	1563.7967	0.79667909	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				20.865	20.865	2	2.1111E-05	12888	DP1061-7	155.97	118.86			NaN	NaN	NaN	0	0	Median	28615000	0	28615000	342	116	328	704	1471;1472	1472		2	9606
AYVWDNNK	1	0	Unmodified	1008.4665	0.46649483	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					15.697	15.697	1;2	0.003818	5391	DP1061-6	98.418	98.418			0.8663	0.96836	NaN	1	0	Median	68297000	37319000	30978000	343	309	329	705;706	1473;1474	1473		2	9606
AYVWDNNKDLAEWLEK	2	0	Unmodified	1992.9581	0.95814177	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	4	0				1		21.163	21.163	3	0.012789	13698	DP1061-9	75.968	42.287			NaN	NaN	NaN	0	0	Median	0	0	0	344	309	330	707	1475	1475		1	9606
CADFGMAADK	1	0	Oxidation (M)	1100.4267	0.4266802	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			13.138	13.138	2	0.0064456	3554	DP1061-8	81.338	64.562			1.0013	1.0695	NaN	1	0	Median	97578000	49534000	48044000	345	87	331	708	1476;1477	1476	103	2	9606
CAGCTNPISGLGGTK	1	0	Unmodified	1491.681	0.68099741	332	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		15.875	15.875	2	0.0063653	6838	DP1061-9	96.604	50.608			NaN	NaN	NaN	0	0	Median	0	0	0	346	332	332	709	1478	1478		1	9606
CAGPTPEAELQALAR	0	1	Unmodified	1582.7773	0.77734063	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		19.288	19.288	2	1.7898E-05	11241	DP1061-9	138.99	101.44			NaN	NaN	NaN	0	0	Median	12934000	0	12934000	347	350	333	710	1479;1480	1480		2	9606
CAPMSDLTDLK	1	0	Oxidation (M)	1265.5632	0.56317368	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				15.504	15.504	2	0.04738	6197	DP1061-7	67.704	30.155			NaN	NaN	NaN	0	0	Median	15332000	0	15332000	348	182	334	711	1481;1482	1482		2	9606
CEMEGCGTVLAHPR	0	1	Oxidation (M)	1631.6854	0.68543086	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	1	0	3	0			1			13.116	13.116	3	1.6512E-06	3633	DP1061-8	135.94	87.278			NaN	NaN	NaN	0	0	Median	12170000	0	12170000	349	450	335	712	1483;1484	1483	532	2	9606
CEMEGCGTVLAHPR	0	1	Unmodified	1615.6905	0.69051624	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	0	3	0			1			14.317	14.317	3	0.0011307	5134	DP1061-8	94.023	66.614			NaN	NaN	NaN	0	0	Median	8131800	0	8131800	350	450	335	713	1485;1486	1485		2	9606
CFGTGAAGNR	0	1	Unmodified	1009.44	0.4399625	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					12.628	12.628	2	0.0016377	2276	DP1061-6	106.36	85.056			5.1827	5.8803	NaN	1	0	Median	18977000	2191400	16786000	351	271	336	714	1487;1488	1487		2	9606
CFIVGADNVGSK	1	0	Unmodified	1265.6074	0.60742176	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		16.516	16.516	2	8.5979E-05	7581	DP1061-9	133.75	98.314			NaN	NaN	NaN	0	0	Median	76926000	0	76926000	352	90	337	715	1489;1490	1490		2	9606
CFNTLTNSFQPSLLGR	0	1	Unmodified	1853.9094	0.90941744	222	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	2	0		1				20.855	20.855	2	1.6758E-07	12951	DP1061-7	160.15	119.04			NaN	NaN	NaN	0	0	Median	4143500	0	4143500	353	222	338	716	1491	1491		1	9606
CGNVNFAR	0	1	Unmodified	936.42358	0.42358415	72	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	5	0					1	13.464	13.464	2	0.0081746	4107	DP1061-10	111.28	80.049			NaN	NaN	NaN	0	0	Median	4613200	0	4613200	354	72	339	717	1492	1492		1	9606
CHVQTIQLCR	0	1	Unmodified	1313.6333	0.63325935	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			14.249	14.249	2	0.023312	5048	DP1061-8	97.635	54.193			NaN	NaN	NaN	0	0	Median	0	0	0	355	29	340	718	1493	1493		1	9606
CKVHNEGLPAPIVR	1	1	Unmodified	1588.8508	0.85078035	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	3	0			1			14.267	14.267	3	0.015528	5107	DP1061-8	73.219	24.56		+	NaN	NaN	NaN	0	0	Median	15775000	15775000	0	356	5	341	719	1494	1494		1	
CLAAEDVVFIGPDTHAIQAMGDKIESK	2	0	Oxidation (M)	2930.4154	0.41539382	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			2			18.73	18.73	3;4	7.3982E-35	9592	DP1061-8	149.41	149.41			0.87992	1.0044	1.1502	2	0	Median	166690000	88355000	78330000	357	86	342	720;721	1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510	1498	91	16	9606
CLLAASPENEAGGLK	1	0	Unmodified	1528.7555	0.75554256	516	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	2	0		1				16.847	16.847	2	0.048479	8208	DP1061-7	71.085	23.887			NaN	NaN	NaN	0	0	Median	6566000	0	6566000	358	516	343	722	1511	1511		1	9606
CLSVSPGGQWLVSGSDDGSLR	0	1	Unmodified	2176.0219	0.021881014	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	3	0			1			20.427	20.427	2	2.0943E-07	11836	DP1061-8	129.01	96.711			NaN	NaN	NaN	0	0	Median	9693000	0	9693000	359	331	344	723	1512;1513	1512		2	9606
CMQLTDFILK	1	0	Oxidation (M)	1283.6254	0.62538001	204	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	1	0	5	0					1	24.208	24.208	2	0.0072063	12947	DP1061-10	104.01	68.835			NaN	NaN	NaN	0	0	Median	0	0	0	360	204	345	724	1514	1514	251	1	9606
CNESLYGR	0	1	Unmodified	997.42873	0.42872911	325	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		13.417	13.417	2	0.0034962	3809	DP1061-9	98.997	68.83			1.1221	1.1997	NaN	1	0	Median	15339000	6735600	8603600	361	325	346	725	1515;1516	1515		2	9606
CPFTGNVSIR	0	1	Unmodified	1149.5601	0.56007764	240	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	16.382	16.382	2	0.052841	6192	DP1061-10	70.816	47.388			NaN	NaN	NaN	0	0	Median	3514000	0	3514000	362	240	347	726	1517	1517		1	9606
CQNIYLTTGYAGSK	1	0	Unmodified	1574.7399	0.73989249	41	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	2	0		1				16.814	16.814	2	1.6769E-05	8075	DP1061-7	138.45	80.647			NaN	NaN	NaN	0	0	Median	7949100	0	7949100	363	41	348	727	1518;1519	1518		2	9606
CTGGEVGATSALAPK	1	0	Unmodified	1417.6871	0.68712864	152	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					4	15.153	15.153	2	0.00013346	6765	DP1061-10	116.54	116.54			NaN	NaN	NaN	0	0	Median	17989000	0	17989000	364	152	349	728;729;730;731	1520;1521;1522;1523;1524;1525;1526;1527;1528	1525		9	9606
CVEVETDVVSNTSGSAR	0	1	Unmodified	1808.8211	0.82105594	348	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				1		15.659	15.659	2	1.8485E-31	6517	DP1061-9	238.13	174.19			NaN	NaN	NaN	0	0	Median	8958900	0	8958900	365	348	350	732	1529;1530	1529		2	9606
CVFALREENK	1	1	Unmodified	1264.6234	0.62340617	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					14.885	14.885	2;3	9.644200000000001E-24	4727	DP1061-6	159.58	159.58			0.86983	0.94464	8.2206	2	0	Median	117350000	57665000	59689000	366	309	351	733;734	1531;1532;1533;1534;1535;1536	1534		6	9606
CVIFEIPGAPDDEAVR	0	1	Unmodified	1786.856	0.85598488	449	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	4	0				1		21.008	21.008	2	2.7474E-07	13486	DP1061-9	128.46	81.857			NaN	NaN	NaN	0	0	Median	3661300	0	3661300	367	449	352	735	1537;1538	1537		2	9606
CYVQPQWVFDSVNAR	0	1	Unmodified	1867.8676	0.86755262	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			20.779	20.779	2	5.5544E-06	12303	DP1061-8	131.37	96.165			NaN	NaN	NaN	0	0	Median	8042500	0	8042500	368	29	353	736	1539;1540;1541	1540		3	9606
DAEAWFNEK	1	0	Unmodified	1108.4825	0.48253882	17	CON__P13645;P13645;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y8;CON__Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Z0	KRT10;KRT28;KRT27;KRT25	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25	yes	no	0	0	0	2.5	1.12	1	1	1	1		18.501	18.501	2	1.9377E-05	10241	DP1061-9	186.3	140.14		+	NaN	NaN	NaN	0	0	Median	101370000	101370000	0	369	17	354	737;738;739;740	1542;1543;1544;1545;1546;1547;1548	1548		7	9606
DAEDAMDAMDGAVLDGR	0	1	2 Oxidation (M)	1782.7036	0.70364292	283	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	2	0	5	0					2	16.362	16.362	2	3.7663E-06	6158	DP1061-10	122.97	107.21			NaN	NaN	NaN	0	0	Median	3450300	0	3450300	370	283	355	741;742	1549;1550;1551;1552	1552	356;357	4	9606
DAEDVDLNHYR	0	1	Unmodified	1345.5899	0.58985744	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				2		15.36	15.36	2;3	6.3475E-05	6190	DP1061-9	136.52	112.22			NaN	NaN	NaN	0	0	Median	62983000	0	62983000	371	360	356	743;744	1553;1554;1555;1556	1555		4	9606
DAFLGSFLYEYSR	0	1	Unmodified	1566.7355	0.73545904	13	CON__P02769			yes	yes	0	0	0	3	0			1			23.654	23.654	2	0.0025763	15929	DP1061-8	98.754	56.544		+	NaN	NaN	NaN	0	0	Median	2497200	2497200	0	372	13	357	745	1557	1557		1	9606
DAGQISGLNVLR	0	1	Unmodified	1241.6728	0.67279921	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			18.87	18.87	2	7.8468E-11	9834	DP1061-8	144.77	144.77			1.8064	1.9464	NaN	1	0	Median	34689000	12689000	22000000	373	166	358	746	1558;1559;1560;1561;1562	1561		5	9606
DAGTIAGLNVLR	0	1	Unmodified	1198.667	0.66698555	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.616	19.616	2	9.373E-07	10789	DP1061-8	131.62	93.889			9.6054	10.161	NaN	1	0	Median	108510000	12185000	96329000	374	113	359	747	1563;1564;1565;1566	1564		4	9606
DAGVIAGLNVLR	0	1	Unmodified	1196.6877	0.68772099	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			3			26.176	26.176	2	1.1842E-06	11874	DP1061-8	128.6	106.92			11.701	12.116	NaN	1	0	Median	408730000	31923000	376810000	375	108	360	748;749;750	1567;1568;1569;1570;1571;1572;1573	1568		7	9606
DAHQSLLATR	0	1	Unmodified	1110.5782	0.57817054	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.632	1	3	1			13.793	13.793	1;2;3	7.4288E-11	4347	DP1061-7	148.56	112.11			0.96192	0.96405	4.1283	3	0	Plateau	1000899999.9999999	486430000	514430000	376	116	361	751;752;753;754;755	1574;1575;1576;1577;1578;1579;1580;1581;1582;1583	1580		10	9606
DALQKEEEMEGDYQETWK	2	0	Oxidation (M)	2243.9529	0.95285798	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	1	1	2	0		1				17.251	17.251	2	4.8209E-15	8662	DP1061-7	203.27	165.92			NaN	NaN	NaN	0	0	Median	10481000	0	10481000	377	334	362	756	1584;1585;1586	1584	435	3	9606
DALSDLALHFLNK	1	0	Unmodified	1455.7722	0.7721789	206	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			2			23.249	23.249	2;3	4.7943E-05	15442	DP1061-8	129.89	85.686			NaN	NaN	NaN	0	0	Median	5578000	0	5578000	378	206	363	757;758	1587;1588;1589	1587		3	9606
DAMHEMEEMIETK	1	0	3 Oxidation (M)	1640.6368	0.63680891	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	3	0	2	0		2				12.747	12.747	2;3	0.00025059	2940	DP1061-7	107.11	77.34			NaN	NaN	NaN	0	0	Median	8639600	0	8639600	379	268	364	759;760	1590;1591;1592	1591	328;329;330	3	9606
DANGNSFATR	0	1	Unmodified	1051.4683	0.46828574	243	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	5	0					1	12.953	12.953	2	0.00037033	3541	DP1061-10	119.68	119.68			10.61	10.363	NaN	1	0	Median	45329000	4037300	41292000	380	243	365	761	1593;1594	1594		2	9606
DAVTYTEHAK	1	0	Unmodified	1133.5353	0.53530267	247	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					6	13.688	13.688	2	2.364E-05	3034	DP1061-10	186.76	156.6			NaN	NaN	NaN	0	0	Median	48290000	43651000	4638700	381	247	366	762;763;764;765;766;767	1595;1596;1597;1598;1599;1600;1601;1602	1595		8	9606
DDCGTFEDTGPLLQFDYK	1	0	Unmodified	2119.9045	0.90445122	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.75	0.829		2	1	1		22.577	22.577	2	9.4207E-31	14662	DP1061-7	237.41	222.6			NaN	NaN	NaN	0	0	Median	49239000	0	49239000	382	339	367	768;769;770;771	1603;1604;1605;1606;1607;1608;1609;1610	1604		8	9606
DDEVQVVR	0	1	Unmodified	958.47197	0.47197413	227	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	0	5	0					2	14.526	14.526	2	0.0067223	4558	DP1061-10	93.195	55.468			13.308	12.998	NaN	1	0	Median	56412000	4484800	51927000	383	227	368	772;773	1611;1612;1613;1614;1615;1616	1612		6	9606
DDLYAEQMER	0	1	Oxidation (M)	1284.5292	0.52923102	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	1	0	1					14.773	14.773	2	0.024992	4605	DP1061-6	76.064	52.993			NaN	NaN	NaN	0	0	Median	5119300	0	5119300	384	559	369	774	1617	1617	652	1	9606
DDPSKPVHLTAFLGYK	2	0	Unmodified	1786.9254	0.92538508	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				2		18.218	18.218	2;3	6.6291E-08	9794	DP1061-9	130.95	108.6			NaN	NaN	NaN	0	0	Median	69476000	0	69476000	385	169	370	775;776	1618;1619;1620	1619		3	9606
DDVAPESGDTTVK	1	0	Unmodified	1332.6045	0.60450445	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			13.449	13.449	2	0.011061	3914	DP1061-8	84.687	62.107			NaN	NaN	NaN	0	0	Median	10679000	0	10679000	386	69	371	777	1621;1622	1622		2	9606
DEDPYCVACFGELFAPK	1	0	Unmodified	2016.8597	0.85974963	325	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		24.028	24.028	2	2.2567E-06	16984	DP1061-9	105.65	97.618			0.80811	0.84474	NaN	1	0	Median	4829100	2541700	2287500	387	325	372	778	1623;1624	1624		2	9606
DEILPTTPISEQK	1	0	Unmodified	1469.7613	0.76133944	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	5	0					1	20.018	20.018	2	0.0099055	9126	DP1061-10	88.056	37.933			NaN	NaN	NaN	0	0	Median	0	0	0	388	140	373	779	1625	1625		1	9606
DELHIVEAEAMNYEGSPIK	1	0	Oxidation (M)	2160.0045	0.0044996155	95	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4	0				2		20.11	20.11	2;3	2.8727E-12	12275	DP1061-9	161.49	130.15			NaN	NaN	NaN	0	0	Median	165110000	0	165110000	389	95	374	780;781	1626;1627;1628;1629;1630	1630	110	5	9606
DELHIVEAEAMNYEGSPIK	1	0	Unmodified	2144.0096	0.0095849934	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				2		20.922	20.922	2;3	2.5323E-20	13329	DP1061-9	196.18	156.39			NaN	NaN	NaN	0	0	Median	23054000	0	23054000	390	95	374	782;783	1631;1632;1633;1634;1635	1634		5	9606
DELPYTFAAPESYEELR	0	1	Unmodified	2028.9317	0.93165225	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	2.5	0.5		1	1			21.719	21.719	2	0.00014898	13987	DP1061-7	109.95	68.712			NaN	NaN	NaN	0	0	Median	15755000	0	15755000	391	268	375	784;785	1636;1637;1638	1636		3	9606
DEPIHILNVAIK	1	0	Unmodified	1360.7715	0.77145062	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.03	0.177	30	1				26.867	26.867	2;3	4.616000000000001E-25	12320	DP1061-6	182.64	145.13			0.77554	0.85138	5.9726	12	0	Median	449450000	269430000	180020000	392	309	376	786;787;788;789;790;791;792;793;794;795;796;797;798;799;800;801;802;803;804;805;806;807;808;809;810;811;812;813;814;815;816	1639;1640;1641;1642;1643;1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696	1651		57	9606
DESSPYAAMLAAQDVAQR	0	1	Oxidation (M)	1937.8789	0.87890517	236	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	0	5	0					3	19.199	19.199	2	0.0089866	8415	DP1061-10	82.908	42.193			NaN	NaN	NaN	0	0	Median	0	0	0	393	236	377	817;818;819	1697;1698;1699	1697	298	3	9606
DETYKPHLER	1	1	Unmodified	1286.6255	0.62551466	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3	0			1			12.906	12.906	3	0.0033719	3419	DP1061-8	90.827	61.084			NaN	NaN	NaN	0	0	Median	44978000	0	44978000	394	450	378	820	1700;1701	1700		2	9606
DFFNYLPLSSQDPAPVR	0	1	Unmodified	1964.9632	0.96322715	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		22.95	22.95	2;3	6.620499999999999E-32	14943	DP1061-8	184.99	152.46			0.7878	0.7935	3.5993	4	0	Linear	413130000	229180000	183950000	395	87	379	821;822;823;824	1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717;1718	1705		17	9606
DFLAGGVAAAISK	1	0	Unmodified	1218.6608	0.66083754	85	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1	0	1					20.023	20.023	2	0.0025534	10617	DP1061-6	98.898	57.469			NaN	NaN	NaN	0	0	Median	3882400	0	3882400	396	85	380	825	1719	1719		1	9606
DFTATFGPLDSLNTR	0	1	Unmodified	1653.7999	0.79985021	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.67	1.11	1	2	1	2		21.883	21.883	2	1.9199E-48	13891	DP1061-8	203.03	203.03			0.89982	0.97235	5.3233	4	0	Median	647510000	337570000	309940000	397	116	381	826;827;828;829;830;831	1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736	1731		17	9606
DFTVASPAEFVTR	0	1	Unmodified	1438.7092	0.70924429	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	3.2	1.17		2	1	1	1	20.522	20.522	2	9.8235E-46	11907	DP1061-8	205.18	132.85			0.81535	0.86869	1.7629	3	0	Plateau	210560000	111590000	98972000	398	309;34	382	832;833;834;835;836	1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753	1747		17	9606
DGDVDQGFR	0	1	Unmodified	1007.4308	0.4308376	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				14.502	14.502	2	0.0095469	5135	DP1061-7	101.25	66.445			NaN	NaN	NaN	0	0	Median	19049000	0	19049000	399	466	383	837	1754;1755	1755		2	9606
DGEERGEEDPEEEHELPVDMETINLDRDAEDVDLNHYR	0	3	Oxidation (M)	4524.9372	0.93716751	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	2	4	0				1		18.542	18.542	5	0.0041757	10355	DP1061-9	44.968	34.96			NaN	NaN	NaN	0	0	Median	11768000	0	11768000	400	360	384	838	1756	1756	470	1	9606
DGTSPEEEIEIER	0	1	Unmodified	1502.6736	0.67364665	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				17.277	17.277	2	0.00087182	8641	DP1061-7	111.86	77.985			NaN	NaN	NaN	0	0	Median	15550000	0	15550000	401	491	385	839	1757;1758	1757		2	9606
DHTLVQTIAR	0	1	Unmodified	1152.6251	0.62512073	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	1.5	0.5	1	1				14.925	14.925	2	5.4024E-11	5696	DP1061-7	155.58	127.5			120.51	123.05	NaN	1	0	Median	483140000	7519500	475620000	402	339	386	840;841	1759;1760;1761;1762	1761		4	9606
DIDEVSSLLR	0	1	Unmodified	1145.5928	0.59281755	205	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			20.15	20.15	2	0.0074237	11571	DP1061-8	96.668	59.477			NaN	NaN	NaN	0	0	Median	6724100	0	6724100	403	205	387	842	1763;1764	1764		2	9606
DIDIHEVR	0	1	Unmodified	995.50361	0.50360861	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				14.614	14.614	2	0.00094301	5250	DP1061-7	131.03	100.96			NaN	NaN	NaN	0	0	Median	63075000	0	63075000	404	281	388	843	1765;1766	1766		2	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	1	0	Unmodified	3263.5066	0.5065879	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0.816		1	1	1		21.66	21.66	3	1.8059E-14	13886	DP1061-7	137.4	98.618		+	NaN	NaN	NaN	0	0	Median	40862000	40862000	0	405	19	389	844;845;846	1767;1768;1769;1770;1771;1772;1773;1774;1775	1768		9	9606
DIICQIAYAR	0	1	Unmodified	1221.6176	0.61759251	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		19.141	19.141	2	1.9564E-05	11028	DP1061-9	128.1	72.988			28.48	30.45	NaN	1	0	Median	108460000	3705200	104760000	406	185	390	847	1776;1777	1777		2	9606
DIIVIGNDITYR	0	1	Unmodified	1390.7456	0.7456298	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	0.5		1	1			20.572	20.572	2	9.6056E-08	12400	DP1061-7	141.89	110.25			1.2854	1.377	42.555	2	0	Median	144480000	67702000	76774000	407	309	391	848;849	1778;1779;1780;1781;1782;1783	1778		6	9606
DIMEETEEK	1	0	Oxidation (M)	1138.47	0.4699848	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					12.705	12.705	2	0.00058873	2352	DP1061-6	127.56	98.416			NaN	NaN	NaN	0	0	Median	7420700	0	7420700	408	68	392	850	1784;1785	1785	65	2	9606
DIPGLTDTTVPR	0	1	Unmodified	1283.6721	0.67213051	246	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	5	0					1	18.589	18.589	2	0.0047102	7898	DP1061-10	92.239	35.807			NaN	NaN	NaN	0	0	Median	5521700	0	5521700	409	246	393	851	1786	1786		1	9606
DIPVLVATDVAAR	0	1	Unmodified	1338.7507	0.75071518	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				20.115	20.115	2	8.1318E-05	12004	DP1061-7	145.99	93.709			NaN	NaN	NaN	0	0	Median	13977000	0	13977000	410	402	394	852	1787;1788	1788		2	9606
DISEASVFDAYVLPK	1	0	Unmodified	1652.8298	0.82975336	252	P62854	RPS26	40S ribosomal protein S26	yes	yes	0	0	0	5	0					1	25.322	25.322	2	0.007749	13942	DP1061-10	85.845	85.845			NaN	NaN	NaN	0	0	Median	29608000	0	29608000	411	252	395	853	1789	1789		1	9606
DISEVIALGVPNPR	0	1	Unmodified	1478.8093	0.80929269	321	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3	0			1			21.543	21.543	2	0.00011804	13234	DP1061-8	152.64	125.67			NaN	NaN	NaN	0	0	Median	10444000	0	10444000	412	321	396	854	1790;1791	1791		2	9606
DISTNKVEQIPYGER	1	1	Unmodified	1747.8741	0.87407779	198	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	1	0	1					16.172	16.172	3	0.028603	6000	DP1061-6	63.682	44.439			NaN	NaN	NaN	0	0	Median	6996600	0	6996600	413	198	397	855	1792	1792		1	9606
DITPSYK	1	0	Unmodified	822.41233	0.41233399	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				14.034	14.034	2	0.033011	4485	DP1061-7	89.369	46.369			NaN	NaN	NaN	0	0	Median	27705000	0	27705000	414	428	398	856	1793;1794	1794		2	9606
DIVEELSALK	1	0	Unmodified	1115.6074	0.60740498	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.474	21.474	2	0.0071941	13667	DP1061-7	97.635	62.19			NaN	NaN	NaN	0	0	Median	22649000	0	22649000	415	182	399	857	1795;1796;1797	1795		3	9606
DKFEEDRIYR	1	2	Unmodified	1369.6626	0.66262845	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					14.245	14.245	2	0.0016183	3957	DP1061-6	108.57	108.57			0.80642	0.97973	NaN	1	0	Median	18006000	9523000	8483300	416	309	400	858	1798;1799	1799		2	9606
DKQNIFEFFER	1	1	Unmodified	1471.7096	0.70957864	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				21.217	21.217	2	0.028691	13440	DP1061-7	101.93	65.504			NaN	NaN	NaN	0	0	Median	5300500	0	5300500	417	289	401	859	1800;1801	1801		2	9606
DLAEWLEK	1	0	Unmodified	1002.5022	0.50221163	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				21.003	21.003	2	0.04115	13090	DP1061-7	71.877	25.926			0.7952	0.83315	NaN	1	0	Median	6764000	3139000	3625100	418	309	402	860	1802	1802		1	9606
DLALVNDQLLGFVR	0	1	Unmodified	1571.8671	0.86714192	365	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				23.673	23.673	2	0.0045301	16189	DP1061-7	101.95	41.556			NaN	NaN	NaN	0	0	Median	0	0	0	419	365	403	861	1803	1803		1	9606
DLAQALINR	0	1	Unmodified	1012.5665	0.56654322	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				18.652	18.652	2	0.00036463	10243	DP1061-7	143.12	41.477			NaN	NaN	NaN	0	0	Median	35032000	0	35032000	420	184	404	862	1804;1805	1805		2	9606
DLEEFFSTVGK	1	0	Unmodified	1270.6081	0.60813326	337	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	3.5	0.5			1	1		22.472	22.472	2	0.00060982	14407	DP1061-8	138.66	88.846			NaN	NaN	NaN	0	0	Median	15817000	0	15817000	421	337	405	863;864	1806;1807;1808;1809	1806		4	9606
DLEKPFLLPVEAVYSVPGR	1	1	Unmodified	2128.1568	0.15684158	196	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		22.246	22.246	3	3.1295E-06	14956	DP1061-9	90.968	80.47			1.6891	1.734	NaN	1	0	Median	6764900	2250700	4514200	422	196	406	865	1810;1811;1812	1811		3	9606
DLEWVER	0	1	Unmodified	945.4556	0.45559579	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		18.373	18.373	2	0.0055151	10156	DP1061-9	107.32	53.112			NaN	NaN	NaN	0	0	Median	20064000	0	20064000	423	462	407	866	1813;1814	1813		2	9606
DLFDLNSSEEDDTEGFSER	0	1	Unmodified	2203.9029	0.90293089	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2.5	0.5		1	1			21.8	21.8	2	1.2656999999999998E-46	13994	DP1061-7	252.2	224.24			NaN	NaN	NaN	0	0	Median	32654000	0	32654000	424	555	408	867;868	1815;1816;1817;1818	1815		4	9606
DLFEDELVPLFEK	1	0	Unmodified	1592.7974	0.7973906	55	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	3	0			1			24.91	24.91	2	3.8429E-05	17302	DP1061-8	132.25	90.71			NaN	NaN	NaN	0	0	Median	2014500	0	2014500	425	55	409	869	1819;1820	1820		2	9606
DLGFNGAPYR	0	1	Unmodified	1108.5302	0.53015772	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					17.877	17.877	2	0.016396	8049	DP1061-6	84.916	52.103			NaN	NaN	NaN	0	0	Median	12572000	0	12572000	426	559	410	870	1821;1822	1821		2	9606
DLHDANTDLIGR	0	1	Unmodified	1338.6528	0.65279205	217	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	1	0	1					15.812	15.812	2	0.001084	5550	DP1061-6	170.89	144.18			NaN	NaN	NaN	0	0	Median	8913900	0	8913900	427	217	411	871	1823;1824	1824		2	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	1	0	2 Oxidation (M)	4299.6572	0.65716542	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	2	0	4.67	0.471				1	2	17.729	17.729	3	2.0596E-18	7050	DP1061-10	126.5	124.13			NaN	NaN	NaN	0	0	Median	16196000	0	16196000	428	173	412	872;873;874	1825;1826;1827;1828;1829;1830;1831;1832;1833;1834	1827	218;219	10	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	1	0	Oxidation (M)	4283.6623	0.6622508	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	5	0					1	17.864	17.864	3	3.7509E-08	7432	DP1061-10	75.897	67.493			NaN	NaN	NaN	0	0	Median	3028200	0	3028200	429	173	412	875	1835	1835	218;219	1	9606
DLITQATLLYTMADK	1	0	Oxidation (M)	1711.8702	0.87023797	389	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	1	0	2	0		1				23.12	23.12	2	0.00089926	15551	DP1061-7	101.53	51.338			NaN	NaN	NaN	0	0	Median	3105100	0	3105100	430	389	413	876	1836	1836	486	1	9606
DLLLNTMSQEEK	1	0	Oxidation (M)	1435.6865	0.68645994	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					16.832	16.832	2	0.03318	6829	DP1061-6	72.321	28.551			NaN	NaN	NaN	0	0	Median	7438200	0	7438200	431	271	414	877	1837;1838	1838		2	9606
DLLSQMHHYNAGVK	1	0	Oxidation (M)	1627.7777	0.77767498	520	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	1	0	2	0		1				14.204	14.204	3	0.052135	4939	DP1061-7	43.798	9.9562			NaN	NaN	NaN	0	0	Median	13168000	0	13168000	432	520	415	878	1839	1839		1	9606
DLMACAQTGSGK	1	0	Oxidation (M)	1253.538	0.53802156	32	O00571;O15523;Q9NQI0	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	yes	no	0	1	0	3	0			1			12.831	12.831	2	0.0098581	3291	DP1061-8	85.355	61.586			NaN	NaN	NaN	0	0	Median	4339700	0	4339700	433	32	416	879	1840;1841	1840	24	2	9606
DLNYCFSGMSDHR	0	1	Oxidation (M)	1616.6348	0.6347755	153	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	1	0	4	0				1		16.179	16.179	3	0.032661	7338	DP1061-9	54.524	41.388			NaN	NaN	NaN	0	0	Median	19392000	0	19392000	434	153	417	880	1842;1843	1843		2	9606
DLQMVNISLR	0	1	Oxidation (M)	1203.6282	0.6281572	458	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	0	4	0				1		18.291	18.291	2	0.024391	10005	DP1061-9	82.831	45.639			NaN	NaN	NaN	0	0	Median	0	0	0	435	458	418	881	1844	1844	551	1	9606
DLQPFPTCQALVYR	0	1	Unmodified	1706.845	0.84502627	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				20.677	20.677	2	1.9749E-05	12635	DP1061-7	124.1	86.109			NaN	NaN	NaN	0	0	Median	8854900	0	8854900	436	331	419	882	1845	1845		1	9606
DLSYCLSGMYDHR	0	1	Oxidation (M)	1631.6708	0.67082665	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				2		17.068	17.068	2;3	0.00059228	8349	DP1061-9	113.47	93.342			8.2712	8.8431	NaN	1	0	Median	49962000	3024400	46938000	437	213	420	883;884	1846;1847;1848;1849;1850	1850	270	5	9606
DLTDYLMK	1	0	Oxidation (M)	1013.4739	0.47394797	261;244;372	P63267;P68133;P68032;P62736;P63261;P60709;Q562R1	ACTG2;ACTA1;ACTC1;ACTA2;ACTG1;ACTB;ACTBL2	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2	no	no	0	1	0	4	0				1		18.786	18.786	1	0.009878	10672	DP1061-9	91.041	34.919			NaN	NaN	NaN	0	0	Median	5276300	0	5276300	438	244;261;372	421	885	1851	1851	303	1	9606
DLYANTVLSGGTTMYPGIADR	0	1	Oxidation (M)	2230.0576	0.057597819	261	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	1	0	4	0				1		20.681	20.681	2	0.0045785	13095	DP1061-9	82.529	42.054			NaN	NaN	NaN	0	0	Median	0	0	0	439	261	422	886	1852	1852	317	1	9606
DLYEDELVPLFEK	1	0	Unmodified	1608.7923	0.79230522	49	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	3	0			1			23.474	23.474	2	0.00096883	15661	DP1061-8	110.66	67.918			NaN	NaN	NaN	0	0	Median	2082300	0	2082300	440	49	423	887	1853	1853		1	9606
DMAGLLKPTACTMLVSSLR	1	1	2 Oxidation (M)	2095.0476	0.047567179	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2	0		2				18.656	18.656	2;3	2.625E-08	10102	DP1061-7	103.9	86.614			0.89779	0.96495	2.549	2	0	Median	178150000	90380000	87766000	441	116	424	888;889	1854;1855;1856;1857;1858;1859;1860;1861	1854	146;147	8	9606
DMAGLLKPTACTMLVSSLR	1	1	Oxidation (M)	2079.0527	0.052652557	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		3				19.919	19.919	2;3	1.6991E-09	11497	DP1061-7	117.84	101.9			0.78961	0.84868	20.591	3	0	Median	66306000	38770000	27536000	442	116	424	890;891;892	1862;1863;1864;1865;1866;1867;1868;1869;1870;1871	1862	146;147	9	9606
DMIILPEMVGSMVGVYNGK	1	0	3 Oxidation (M)	2099.9941	0.99413463	249	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	3	0	5	0					1	21.702	21.702	2	0.053078	10443	DP1061-10	41.227	9.701			NaN	NaN	NaN	0	0	Median	0	0	0	443	249	425	893	1872	1872		1	9606
DMLLANKVPAAAR	1	1	Unmodified	1368.7548	0.7547547	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	1	4	0				1		16.309	16.309	3	0.024529	7424	DP1061-9	64.65	38.239			NaN	NaN	NaN	0	0	Median	7255600	0	7255600	444	90	426	894	1873	1873		1	9606
DMPIQAFLLYQEPVLGPVR	0	1	Oxidation (M)	2201.1555	0.15546137	10	CON__P02666			yes	yes	0	1	0	2.9	1.3	2	2	2	3	1	24.471	24.471	2;3	1.6546E-45	16297	DP1061-8	243.49	201.02		+	NaN	NaN	NaN	0	0	Median	82406000	82406000	0	445	10	427	895;896;897;898;899;900;901;902;903;904	1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900	1889	4	27	
DMPIQAFLLYQEPVLGPVR	0	1	Unmodified	2185.1605	0.16054675	10	CON__P02666			yes	yes	0	0	0	3	0			1			25.21	25.21	2	0.024435	17670	DP1061-8	78.814	52.085		+	NaN	NaN	NaN	0	0	Median	0	0	0	446	10	427	905	1901	1901		1	
DMTLEGDDLILEIE	0	0	Oxidation (M)	1620.744	0.7440344	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	0.957	1	2	2	1		25.588	25.588	2	9.9662E-06	17761	DP1061-7	131.62	96.814			NaN	NaN	NaN	0	0	Median	0	0	0	447	116	428	906;907;908;909;910;911	1902;1903;1904;1905;1906;1907;1908;1909;1910;1911	1904	148	10	9606
DMVGIAQTGSGK	1	0	Oxidation (M)	1178.5601	0.56013721	440	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	1	0	3	0			1			13.366	13.366	2	0.018195	3891	DP1061-8	77.288	38.325			NaN	NaN	NaN	0	0	Median	9122500	0	9122500	448	440	429	912	1912	1912	527	1	9606
DMYDQVLK	1	0	Unmodified	1010.4743	0.47428232	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					17.658	17.658	2	0.017217	7756	DP1061-6	82.241	53.818			0.841	0.94007	NaN	1	0	Median	81293000	43802000	37491000	449	309;34	430	913	1913	1913		1	9606
DNIQGITKPAIR	1	1	Unmodified	1324.7463	0.7462985	247	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					2	21.95	21.95	2;3	0.0006527	11187	DP1061-10	109.39	83.406			NaN	NaN	NaN	0	0	Median	70547000	0	70547000	450	247	431	914;915	1914;1915;1916;1917;1918;1919;1920;1921	1916		8	9606
DNNLLGR	0	1	Unmodified	800.41407	0.41406533	108;128	P17066;P0DMV9;P0DMV8	HSPA6;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.33	0.471			2	1		14.629	14.629	2	0.0055151	5325	DP1061-8	107.32	73.579			NaN	NaN	NaN	0	0	Median	330440000	0	330440000	451	128;108	432	916;917;918	1922;1923;1924;1925	1922		4	9606
DNTCVVEFQFMLPTSHPNR	0	1	Oxidation (M)	2307.0412	0.041236248	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				20.142	20.142	3	0.0035538	11993	DP1061-7	78.088	55.458			NaN	NaN	NaN	0	0	Median	10734000	10734000	0	452	309	433	919;920	1926;1927;1928	1927	380	3	9606
DNTQLLINQLWQLPTER	0	1	Unmodified	2081.0906	0.090552927	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		24.517	24.517	2	3.0626E-15	17506	DP1061-9	200.76	154.97			NaN	NaN	NaN	0	0	Median	2035600	0	2035600	453	350	434	921	1929;1930	1929		2	9606
DPAQPMSPGEATQSGAR	0	1	Oxidation (M)	1714.7581	0.75806175	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0.816	1	1	1			13.28	13.28	2	2.9239E-05	3494	DP1061-7	118.76	91.114			NaN	NaN	NaN	0	0	Median	19601000	0	19601000	454	466	435	922;923;924	1931;1932;1933;1934;1935;1936	1934	560	6	9606
DPAQPMSPGEATQSGAR	0	1	Unmodified	1698.7631	0.76314713	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2.5	0.5		1	1			14.551	14.551	2	0.00093477	5192	DP1061-7	110.8	51.536			NaN	NaN	NaN	0	0	Median	0	0	0	455	466	435	925;926	1937;1938	1937		2	9606
DPAQPMSPGEATQSGARPADR	0	2	Oxidation (M)	2153.976	0.97599345	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	1	1.5	0.5	1	1				13.033	13.033	3	0.024667	2682	DP1061-6	65.808	47.792			NaN	NaN	NaN	0	0	Median	14702000	0	14702000	456	466	436	927;928	1939;1940;1941;1942	1939	560	4	9606
DPFSSSLQNR	0	1	Unmodified	1149.5415	0.54145068	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	2	0		1				16.708	16.708	2	0.00042111	7925	DP1061-7	122.52	78.709			NaN	NaN	NaN	0	0	Median	10138000	0	10138000	457	397	437	929	1943;1944	1943		2	9606
DPSDYVRAMREMNGK	1	2	2 Oxidation (M)	1799.7931	0.79306705	469	Q9BTD8	RBM42	RNA-binding protein 42	yes	yes	0	2	2	5	0					1	27.768	27.768	2	0.02526	16378	DP1061-10	72.2	37.124			NaN	NaN	NaN	0	0	Median	0	0	0	458	469	438	930	1945	1945	566;567	1	9606
DPSLPLLELQDIMTSVSGR	0	1	Oxidation (M)	2086.0616	0.061620564	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.25	0.433	3	1				24.293	24.293	2	1.5336E-18	16353	DP1061-7	157.37	157.37			0.74026	0.81811	9.7919	4	0	Median	83502000	47437000	36065000	459	309	439	931;932;933;934	1946;1947;1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960	1960	381	15	9606
DPTPSFYDLWAQEDPNAVLGR	0	1	Unmodified	2390.1179	0.11788989	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2.5	0.5		1	1			24.381	24.381	2	1.0108E-16	16724	DP1061-8	190.34	157.61			NaN	NaN	NaN	0	0	Median	10029000	0	10029000	460	331	440	935;936	1961;1962;1963;1964;1965;1966	1966		6	9606
DPVLAPAVGADLLDYCLAR	0	1	Unmodified	2028.035	0.035011883	54	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					24.241	24.241	2	0.00063323	14480	DP1061-6	105.99	76.693			NaN	NaN	NaN	0	0	Median	2904400	0	2904400	461	54	441	937	1967;1968	1968		2	9606
DQPAFTPSGILTPHALGSR	0	1	Unmodified	1964.0116	0.011574324	487	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	2	0		1				19.254	19.254	3	0.00080575	10919	DP1061-7	102.39	67.257			NaN	NaN	NaN	0	0	Median	8193300	0	8193300	462	487	442	938	1969;1970;1971	1971		3	9606
DQSAVVVQGLPEGVAFK	1	0	Unmodified	1742.9203	0.9202997	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.31	20.31	2	1.7647999999999999E-22	12193	DP1061-7	165.51	135.97			1.1436	1.1981	NaN	1	0	Median	28650000	11667000	16983000	463	269	443	939	1972;1973;1974;1975	1972		4	9606
DQTPDENDQVVVK	1	0	Unmodified	1485.6947	0.69471644	27	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			14.504	14.504	2	0.0086894	5373	DP1061-8	93.258	50.922			NaN	NaN	NaN	0	0	Median	0	0	0	464	27	444	940	1976	1976		1	9606
DSAQTSVTQAQR	0	1	Unmodified	1290.6164	0.61640654	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.498	12.498	2	0.001572	2130	DP1061-6	112.13	45.437			NaN	NaN	NaN	0	0	Median	5279700	0	5279700	465	346	445	941	1977	1977		1	9606
DSETVDEDEEVDPALTVGTIK	1	0	Unmodified	2261.0434	0.043447122	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					19.746	19.746	2	2.1105E-07	10151	DP1061-6	128.95	89.526			NaN	NaN	NaN	0	0	Median	8491900	0	8491900	466	340	446	942	1978;1979	1979		2	9606
DSGSFVAFQNIPGSELMSSFAK	1	0	Oxidation (M)	2334.0838	0.083812569	175	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	1	0	3	0			1			22.216	22.216	2	0.0070115	14110	DP1061-8	88.768	62.656			NaN	NaN	NaN	0	0	Median	3571900	0	3571900	467	175	447	943	1980;1981	1980	222	2	9606
DSLYAQGR	0	1	Unmodified	908.43519	0.4351947	443	Q969Q0	RPL36AL	60S ribosomal protein L36a-like	yes	yes	0	0	0	5	0					1	13.455	13.455	2	0.026952	4106	DP1061-10	82.305	40.876			NaN	NaN	NaN	0	0	Median	8615300	0	8615300	468	443	448	944	1982;1983	1983		2	9606
DSNPEEIEIDFETLKPSTLR	1	1	Unmodified	2332.1434	0.14343594	143	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	1	4	0				1		21.145	21.145	3	0.00056587	13727	DP1061-9	103.41	62.893			NaN	NaN	NaN	0	0	Median	5571500	0	5571500	469	143	449	945	1984;1985	1985		2	9606
DSNSIIKDR	1	1	Unmodified	1046.5356	0.53563702	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				12.567	12.567	2	0.002957	2712	DP1061-7	151.44	105.07			NaN	NaN	NaN	0	0	Median	14084000	0	14084000	470	512	450	946	1986;1987	1986		2	9606
DSQVVQVVLDGLK	1	0	Unmodified	1398.7718	0.77184455	28	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	3	0			1			21.892	21.892	2	4.2998E-05	13685	DP1061-8	168.22	135.16			NaN	NaN	NaN	0	0	Median	8329000	0	8329000	471	28	451	947	1988;1989	1989		2	9606
DSWVDIFR	0	1	Unmodified	1036.4978	0.49779495	22	CON__Q3ZBS7			yes	yes	0	0	0	3	0			1			22.735	22.735	2	0.026674	14739	DP1061-8	82.671	22.313		+	NaN	NaN	NaN	0	0	Median	2808700	2808700	0	472	22	452	948	1990	1990		1	9606
DSYVGDEAQSK	1	0	Unmodified	1197.515	0.51496116	261;244	P63267;P68133;P68032;P62736;P63261;P60709	ACTG2;ACTA1;ACTC1;ACTA2;ACTG1;ACTB	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	no	no	0	0	0	4	0				1		13.149	13.149	2	0.0056883	3515	DP1061-9	93.667	63.482			NaN	NaN	NaN	0	0	Median	6775300	0	6775300	473	244;261	453	949	1991;1992	1992		2	9606
DTEMLATGAQDGK	1	0	Oxidation (M)	1351.5926	0.59255956	366	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	1	0	2.67	1.25	1		1	1		13.468	13.468	2	5.5182E-05	3942	DP1061-8	146.71	128.49			NaN	NaN	NaN	0	0	Median	28043000	0	28043000	474	366	454	950;951;952	1993;1994;1995;1996;1997;1998;1999	1996	479	7	9606
DTEMLATGAQDGK	1	0	Unmodified	1335.5976	0.59764493	366	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	3	0			1			14.87	14.87	2	0.03865	5762	DP1061-8	75.416	37.113			NaN	NaN	NaN	0	0	Median	0	0	0	475	366	454	953	2000	2000		1	9606
DTLTISGTPEVTCVVVDVGHDDPEVK	1	0	Unmodified	2781.3379	0.337855	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	2	0		1				20.278	20.278	3	0.00010589	12232	DP1061-7	102.16	77.011		+	NaN	NaN	NaN	0	0	Median	10777000	10777000	0	476	5	455	954	2001;2002;2003	2001		3	
DTLYEAVR	0	1	Unmodified	965.48181	0.48181054	256	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	16.196	16.196	2	0.0055228	6792	DP1061-10	95.352	30.549			21.131	20.638	NaN	1	0	Median	70765000	3876600	66889000	477	256	456	955	2004;2005;2006;2007;2008;2009	2006		6	9606
DTPGHGSGWAETPR	0	1	Unmodified	1466.6539	0.65385468	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				14.165	14.165	3	0.00014395	4668	DP1061-7	114.7	92.832			NaN	NaN	NaN	0	0	Median	18415000	0	18415000	478	64	457	956	2010;2011	2011		2	9606
DTPLFSEAR	0	1	Unmodified	1034.5033	0.50327426	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.057	17.057	2	0.0010178	7065	DP1061-6	113.26	84.106			0.80106	0.89445	NaN	1	0	Median	28099000	13729000	14370000	479	34	458	957	2012;2013	2013		2	9606
DTPTSAGPNSFNK	1	0	Unmodified	1334.6103	0.61025853	430	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	5	0					1	14.237	14.237	2	0.017028	4574	DP1061-10	78.513	54.291			NaN	NaN	NaN	0	0	Median	9767300	0	9767300	480	430	459	958	2014;2015	2015		2	9606
DTQAMKEMHFHPK	2	0	2 Oxidation (M)	1630.7232	0.72319657	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2	0		1				12.401	12.401	3	0.00014797	2459	DP1061-7	103.46	78.948			0.89492	1.0067	NaN	1	0	Median	244310000	127800000	116500000	481	116	460	959	2016;2017;2018;2019	2017	149;150	4	9606
DTQAMKEMHFHPK	2	0	Oxidation (M)	1614.7283	0.72828195	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		1				12.449	12.449	3	0.042472	2620	DP1061-7	45.891	26.395			0.47945	0.53933	NaN	1	0	Median	15043000	9845400	5198100	482	116	460	960	2020	2020	149;150	1	9606
DTSYLFITGPDVVK	1	0	Unmodified	1553.7977	0.79772495	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.481	21.481	2	9.1819E-79	13092	DP1061-8	245.08	219.01			0.89182	0.94237	4.5478	2	0	Median	406240000	211270000	194970000	483	87	461	961;962	2021;2022;2023;2024;2025;2026;2027;2028	2024		8	9606
DVDAAYMNK	1	0	Oxidation (M)	1041.4437	0.44371047	18	CON__P13647;P13647;CON__O95678;O95678;CON__Q14CN4-1;CON__Q6IME9;Q14CN4	KRT5;KRT75;KRT72	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 72	no	no	0	1	0	1	0	1					12.946	12.946	2	0.028398	2564	DP1061-6	75.738	25.131		+	NaN	NaN	NaN	0	0	Median	2261600	2261600	0	484	18	462	963	2029;2030	2029	7	2	9606
DVDDGLQAAEEVGYPVMIK	1	0	Oxidation (M)	2063.9721	0.97213685	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	1.1	2	2		1		20.931	20.931	2;3	8.2556E-17	11336	DP1061-6	143.58	143.58			0.68369	0.72992	3.8892	5	0	Median	330190000	189900000	140280000	485	309	463	964;965;966;967;968	2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041	2034	382	11	9606
DVDDGLQAAEEVGYPVMIK	1	0	Unmodified	2047.9772	0.97722223	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.2	0.4	4	1				22.075	22.075	2	4.4370999999999996E-32	14205	DP1061-7	179.46	150.65			0.884	0.95666	20.664	2	0	Median	25881000	14875000	11006000	486	309	463	969;970;971;972;973	2042;2043;2044;2045;2046;2047;2048;2049;2050;2051;2052;2053;2054	2052		13	9606
DVDGAYMTK	1	0	Unmodified	998.4379	0.43789681	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				14.516	14.516	2	0.024116	5189	DP1061-7	80.165	19.688		+	NaN	NaN	NaN	0	0	Median	16215000	16215000	0	487	80	464	974	2055;2056	2056		2	9606
DVDNAYMIK	1	0	Oxidation (M)	1083.4907	0.49066067	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1	0	1					15.44	15.44	2	0.0065157	5206	DP1061-6	105.14	81.18		+	NaN	NaN	NaN	0	0	Median	48154000	48154000	0	488	20	465	975	2057	2057	14	1	9606
DVESVQTPSK	1	0	Unmodified	1088.535	0.53496832	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				13.031	13.031	2	0.0003531	3242	DP1061-7	124.92	88.221			NaN	NaN	NaN	0	0	Median	13795000	0	13795000	489	182	466	976	2058	2058		1	9606
DVESYIHR	0	1	Unmodified	1017.488	0.48795855	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				15.143	15.143	2	0.011635	5917	DP1061-7	105.12	69.623			NaN	NaN	NaN	0	0	Median	36413000	0	36413000	490	508	467	977	2059;2060	2060		2	9606
DVGDTCSVGKKDEEQAALGQK	3	0	Unmodified	2234.0485	0.048489695	364	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	2	3	0			2			13.925	13.925	3	2.2678E-07	4634	DP1061-8	126.19	93.639			NaN	NaN	NaN	0	0	Median	0	0	0	491	364	468	978;979	2061;2062	2061		2	9606
DVLGWGENDR	0	1	Unmodified	1159.5258	0.52580062	163	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	4	0				1		18.538	18.538	2	0.018693	10347	DP1061-9	82.749	61.449			NaN	NaN	NaN	0	0	Median	9334300	0	9334300	492	163	469	980	2063;2064	2063		2	9606
DVNAAIATIK	1	0	Unmodified	1014.571	0.5709599	264;394;465	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	2.75	1.09	1		2	1		17.077	17.077	2	0.0023037	8062	DP1061-9	101.46	63.732			3.3281	3.5167	2.6069	2	0	Median	221650000	41011000	180630000	493	264;394;465	470	981;982;983;984	2065;2066;2067;2068;2069;2070;2071;2072;2073;2074;2075	2072		11	9606
DVNLASCAADGSVK	1	0	Unmodified	1405.6507	0.65074314	46	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			16.273	16.273	2	0.016333	7031	DP1061-8	84.365	49.673			NaN	NaN	NaN	0	0	Median	0	0	0	494	46	471	985	2076	2076		1	9606
DVNQQEFVR	0	1	Unmodified	1133.5465	0.54653606	168	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	15.466	15.466	2	0.00014594	5487	DP1061-10	138.54	85.829			NaN	NaN	NaN	0	0	Median	23831000	0	23831000	495	168	472	986	2077;2078	2078		2	9606
DVNTNSENWAVVK	1	0	Unmodified	1474.7052	0.70522155	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1	0	1					17.538	17.538	2	0.0026897	7691	DP1061-6	98.04	42.027			NaN	NaN	NaN	0	0	Median	3625400	0	3625400	496	497	473	987	2079;2080	2080		2	9606
DVQIGDIVTVGECRPLSK	1	1	Unmodified	1985.0252	0.025175478	240	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					3	24.91	24.91	2;3	0.001279	13580	DP1061-10	113.65	72.93			NaN	NaN	NaN	0	0	Median	11002000	0	11002000	497	240	474	988;989;990	2081;2082;2083;2084;2085	2084		5	9606
DVTEAEQAEEQAR	0	1	Unmodified	1474.6536	0.65357991	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1.5	0.5	1	1				14.713	14.713	2	2.6645E-15	4556	DP1061-6	211.78	156.69			NaN	NaN	NaN	0	0	Median	15694000	0	15694000	498	303	475	991;992	2086;2087;2088;2089	2087		4	9606
DVTEAEQAEEQARQEEQVVR	0	2	Unmodified	2343.0939	0.093859983	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	1	1.8	0.4	1	4				17.186	17.186	3	8.6481E-05	8571	DP1061-7	108.63	63.636			NaN	NaN	NaN	0	0	Median	21431000	0	21431000	499	303	476	993;994;995;996;997	2090;2091;2092;2093;2094;2095;2096;2097	2094		8	9606
DVVMEPTMK	1	0	2 Oxidation (M)	1080.4831	0.48313245	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	2	0	1.67	0.471	1	2				12.921	12.921	2	0.037083	3174	DP1061-7	69.598	25.79			NaN	NaN	NaN	0	0	Median	0	0	0	500	485	477	998;999;1000	2098;2099;2100	2100		3	9606
DVVQAYPEVR	0	1	Unmodified	1174.5982	0.59823728	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				16.383	16.383	2	0.015532	7419	DP1061-7	85.731	53.97			NaN	NaN	NaN	0	0	Median	23409000	0	23409000	501	296	478	1001	2101;2102	2102		2	9606
DVWGIEGPIDAAFTR	0	1	Unmodified	1645.81	0.81002097	22	CON__Q3ZBS7;P04004	VTN	Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B	yes	no	0	0	0	3	0			1			23.486	23.486	2	9.4654E-06	15734	DP1061-8	122.34	85.92		+	NaN	NaN	NaN	0	0	Median	4498200	4498200	0	502	22	479	1002	2103;2104	2103		2	9606
DWVLNEFK	1	0	Unmodified	1049.5182	0.51819605	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.904	20.904	2	0.022851	12402	DP1061-8	87.696	41.744			NaN	NaN	NaN	0	0	Median	26092000	0	26092000	503	130	480	1003	2105	2105		1	9606
DYDDMSPR	0	1	Oxidation (M)	1013.376	0.37602484	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	3	0			1			12.705	12.705	2	0.02068	3123	DP1061-8	83.753	79.396			NaN	NaN	NaN	0	0	Median	30175000	0	30175000	504	232	481	1004	2106;2107	2107	294	2	9606
DYEEVGVDSVEGEGEEEGEEY	0	0	Unmodified	2347.8976	0.89757075	264;394	P68363;Q71U36	TUBA1B;TUBA1A	Tubulin alpha-1B chain;Tubulin alpha-1A chain	no	no	0	0	0	4	0				1		20.881	20.881	2	0.042015	13319	DP1061-9	102.97	88.461			NaN	NaN	NaN	0	0	Median	0	0	0	505	264;394	482	1005	2108	2108		1	9606
DYFEQYGK	1	0	Unmodified	1048.4502	0.45017606	103	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		17.169	17.169	2	0.022598	8538	DP1061-9	88.029	69.05			NaN	NaN	NaN	0	0	Median	28974000	0	28974000	506	103	483	1006	2109;2110	2109		2	9606
DYHFKVDNDENEHQLSLR	1	1	Unmodified	2258.0352	0.035222893	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		16.094	16.094	3;4	9.2656E-05	7098	DP1061-9	106.87	82.272			NaN	NaN	NaN	0	0	Median	28453000	0	28453000	507	95	484	1007;1008	2111;2112;2113;2114	2113		4	9606
DYIVVGSDSGR	0	1	Unmodified	1166.5568	0.5567664	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					16.275	16.275	2	0.0052799	6144	DP1061-6	96.143	66.336			NaN	NaN	NaN	0	0	Median	4233900	0	4233900	508	356	485	1009	2115;2116;2117	2117		3	9606
DYQELMNTK	1	0	Oxidation (M)	1156.507	0.50703901	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	0	3	2	1				1	14.291	14.291	2	0.0084083	3926	DP1061-6	98.582	60.77		+	NaN	NaN	NaN	0	0	Median	63464000	63464000	0	509	80	486	1010;1011	2118;2119;2120	2120	77	3	9606
DYQELMNTK	1	0	Unmodified	1140.5121	0.51212439	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	1.5	0.5	1	1				16.715	16.715	2	0.0015314	6644	DP1061-6	120.87	74.896		+	NaN	NaN	NaN	0	0	Median	29326000	29326000	0	510	80	486	1012;1013	2121;2122;2123;2124	2122		4	9606
DYQELMNVK	1	0	Oxidation (M)	1154.5278	0.52777445	20	CON__P35908v2;P35908;CON__P35908;Q01546;Q5XKE5;CON__Q01546;CON__Q5XKE5;CON__P12035;P12035	KRT2;KRT76;KRT79;KRT3	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 3	yes	no	0	1	0	1.5	0.5	1	1				15.58	15.58	2	0.0029301	6376	DP1061-7	98.629	64.708		+	1.6803	1.7605	NaN	1	0	Median	62986000	42320000	20666000	511	20	487	1014;1015	2125;2126;2127;2128	2128	15	4	9606
DYSLLPLLAAAPQVGEK	1	0	Unmodified	1783.972	0.97200092	165	P38432	COIL	Coilin	yes	yes	0	0	0	3	0			1			23.788	23.788	2	0.0014946	16061	DP1061-8	107.17	63.653			NaN	NaN	NaN	0	0	Median	0	0	0	512	165	488	1016	2129	2129		1	9606
EAAGTTAAAGTGGATEQPPR	0	1	Unmodified	1812.8602	0.86021864	48	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				13.206	13.206	2	4.9542E-12	3511	DP1061-7	156.2	122.33			NaN	NaN	NaN	0	0	Median	5409100	0	5409100	513	48	489	1017	2130;2131	2131		2	9606
EAALVQQEEEKAEQR	1	1	Unmodified	1756.8592	0.85915601	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	2	0		1				14.839	14.839	3	9.3676E-06	5639	DP1061-7	141	93.966			NaN	NaN	NaN	0	0	Median	18525000	0	18525000	514	347	490	1018	2132;2133	2133		2	9606
EACWTISNITAGNR	0	1	Unmodified	1591.7413	0.74128948	211;56	P52294;O60684	KPNA1;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7	no	no	0	0	0	3	0			2			18.93	18.93	2	0.0087068	9934	DP1061-8	88.441	47.673			NaN	NaN	NaN	0	0	Median	0	0	0	515	211;56	491	1019;1020	2134;2135	2134		2	9606
EAEEVMDAGCQESAGPER	0	1	Oxidation (M)	1979.7837	0.78368416	457	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	1	0	2	0		1				13.805	13.805	2	4.1203E-08	4286	DP1061-7	154.65	139.68			NaN	NaN	NaN	0	0	Median	0	0	0	516	457	492	1021	2136	2136	550	1	9606
EAEQMGNELER	0	1	Oxidation (M)	1320.5616	0.56159378	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	0	1	0	1					12.675	12.675	2	0.0010264	2314	DP1061-6	117.31	81.867			NaN	NaN	NaN	0	0	Median	3048100	0	3048100	517	346	493	1022	2137;2138	2137	458	2	9606
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	1	0	Unmodified	3310.5268	0.52681154	368	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	0	3.5	0.5			1	1		20.956	20.956	3	8.0871E-10	13395	DP1061-9	116.72	0			NaN	NaN	NaN	0	0	Median	18594000	0	18594000	518	368	494	1023;1024	2139;2140;2141;2142;2143;2144	2144		6	9606
EAFAGDDVIRDFLK	1	1	Unmodified	1594.7991	0.79912193	474	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	1	2	0		1				21.269	21.269	3	0.0032103	13443	DP1061-7	84.753	55.964			NaN	NaN	NaN	0	0	Median	3790700	0	3790700	519	474	495	1025	2145;2146	2145		2	9606
EAGELKPEEEITVGPVQK	2	0	Unmodified	1952.0102	0.01023692	215	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	2	0		1				16.353	16.353	3	0.0024078	7464	DP1061-7	89.311	59.239			NaN	NaN	NaN	0	0	Median	8287400	0	8287400	520	215	496	1026	2147	2147		1	9606
EAGEQGDIEPR	0	1	Unmodified	1199.5418	0.54184461	316	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			1			13.022	13.022	2	0.0055658	3413	DP1061-8	94.409	58.791			NaN	NaN	NaN	0	0	Median	5896900	0	5896900	521	316	497	1027	2148;2149;2150;2151	2148		4	9606
EAGGNMSIQFLGTVYK	1	0	Oxidation (M)	1729.8345	0.83452116	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		19.408	19.408	2	8.501699999999999E-38	10492	DP1061-8	187.62	187.62			1.0301	1.0885	4.1636	2	0	Median	263490000	128880000	134610000	522	86	498	1028;1029	2152;2153;2154;2155;2156;2157	2155	92	6	9606
EAGGNMSIQFLGTVYK	1	0	Unmodified	1713.8396	0.83960654	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.667	20.667	2	1.2722E-07	12135	DP1061-8	133.32	77.278			NaN	NaN	NaN	0	0	Median	20217000	0	20217000	523	86	498	1030	2158;2159;2160;2161	2159		4	9606
EAHQLFLEPEVLDPESVELK	1	0	Unmodified	2321.1791	0.17909316	170	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	4	0				1		21.002	21.002	3	0.01036	13513	DP1061-9	75.608	47.468			NaN	NaN	NaN	0	0	Median	2922800	0	2922800	524	170	499	1031	2162;2163	2162		2	9606
EAIEGTYIDKK	2	0	Unmodified	1265.6503	0.65033243	240	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					2	17.404	17.404	2	0.016839	9865	DP1061-10	103.88	62.996			1.2873	1.3645	NaN	1	0	Median	15070000	4342600	10727000	525	240	500	1032;1033	2164;2165	2164		2	9606
EAIQCVDNNQSVLVSAHTSAGK	1	0	Unmodified	2327.1176	0.11757231	176	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	2	0		1				15.679	15.679	3	0.0053521	6558	DP1061-7	74.742	44.552			NaN	NaN	NaN	0	0	Median	0	0	0	526	176	501	1034	2166	2166		1	9606
EALDVLGAVLK	1	0	Unmodified	1126.6598	0.6597749	435	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	4	0				1		21.293	21.293	2	0.0040589	13839	DP1061-9	103.55	52.94			NaN	NaN	NaN	0	0	Median	6079100	0	6079100	527	435	502	1035	2167;2168	2168		2	9606
EALENANTNTEVLK	1	0	Unmodified	1544.7682	0.76821573	490	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	4	0				1		15.368	15.368	2	0.0001159	6222	DP1061-9	154.15	90.456			NaN	NaN	NaN	0	0	Median	8002400	0	8002400	528	490	503	1036	2169;2170	2169		2	9606
EALLAALGYK	1	0	Unmodified	1047.5964	0.59644637	470	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	4	0				1		20.201	20.201	2	0.025578	12492	DP1061-9	95.909	35.227			NaN	NaN	NaN	0	0	Median	0	0	0	529	470	504	1037	2171	2171		1	9606
EALLELLR	0	1	Unmodified	955.57023	0.57023162	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		20.84	20.84	2	0.016993	13189	DP1061-9	96.19	55.505			NaN	NaN	NaN	0	0	Median	11334000	0	11334000	530	329	505	1038	2172;2173	2172		2	9606
EALPDHEDEIPETVR	0	1	Unmodified	1748.8217	0.82170787	539	Q9UPP1	PHF8	Histone lysine demethylase PHF8	yes	yes	0	0	0	2	0		1				16.01	16.01	2	0.0056532	6994	DP1061-7	98.105	52.507			NaN	NaN	NaN	0	0	Median	0	0	0	531	539	506	1039	2174	2174		1	9606
EAMEDGEIDGNK	1	0	Oxidation (M)	1322.5296	0.52962495	134	P19338	NCL	Nucleolin	yes	yes	0	1	0	2.5	0.5		1	1			12.492	12.492	2	2.551E-09	2577	DP1061-7	194.94	151.3			NaN	NaN	NaN	0	0	Median	94212000	0	94212000	532	134	507	1040;1041	2175;2176;2177;2178	2175	181	4	9606
EAMEDGEIDGNK	1	0	Unmodified	1306.5347	0.53471033	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			13.818	13.818	2	9.6559E-05	4206	DP1061-7	132.88	81.43			NaN	NaN	NaN	0	0	Median	18508000	0	18508000	533	134	507	1042;1043	2179;2180;2181;2182	2179		4	9606
EAMEDGEIDGNKVTLDWAK	2	0	Oxidation (M)	2135.9681	0.96811411	134	P19338	NCL	Nucleolin	yes	yes	0	1	1	2	0		1				18.585	18.585	3	0.0019348	10016	DP1061-7	97.352	61.729			NaN	NaN	NaN	0	0	Median	12517000	0	12517000	534	134	508	1044	2183;2184	2183	181	2	9606
EAMEDGEIDGNKVTLDWAKPK	3	0	Oxidation (M)	2361.1158	0.11584098	134	P19338	NCL	Nucleolin	yes	yes	0	1	2	2.5	0.5		1	1			17.089	17.089	4	0.019443	8333	DP1061-7	62.617	44.462			NaN	NaN	NaN	0	0	Median	114350000	0	114350000	535	134	509	1045;1046	2185;2186;2187	2185	181	3	9606
EAMEDGEIDGNKVTLDWAKPK	3	0	Unmodified	2345.1209	0.12092636	134	P19338	NCL	Nucleolin	yes	yes	0	0	2	2	0		1				17.686	17.686	4	0.00081863	9248	DP1061-7	100.45	74.533			NaN	NaN	NaN	0	0	Median	17431000	0	17431000	536	134	509	1047	2188;2189	2189		2	9606
EAMEHPYFYTVVK	1	0	Oxidation (M)	1628.7545	0.75447993	266	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	1	0	4	0				1		16.808	16.808	3	0.05414	8033	DP1061-9	40.88	26.448			NaN	NaN	NaN	0	0	Median	10265000	0	10265000	537	266	510	1048	2190	2190		1	9606
EAMNDPLLER	0	1	Oxidation (M)	1202.5601	0.56013721	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2	0		1				15.645	15.645	2	0.007063	6424	DP1061-7	92.051	57.865			NaN	NaN	NaN	0	0	Median	15033000	0	15033000	538	45	511	1049	2191	2191	45	1	9606
EAMVQAEEAAAEITR	0	1	Oxidation (M)	1633.7618	0.76175015	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	3	0			3			17.158	17.158	2	0.00025156	8129	DP1061-8	109.16	48.517			NaN	NaN	NaN	0	0	Median	14490000	0	14490000	539	31	512	1050;1051;1052	2192;2193;2194;2195;2196;2197	2196	20	6	9606
EANNFLWPFK	1	0	Unmodified	1264.6241	0.6240581	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	5	0					1	26.353	26.353	2	0.019192	15086	DP1061-10	82.279	49.959			NaN	NaN	NaN	0	0	Median	5805500	0	5805500	540	132	513	1053	2198	2198		1	9606
EAPAPPKAEAK	2	0	Unmodified	1107.5924	0.59242362	245	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	12.418	12.418	2	0.0011687	2911	DP1061-10	141.91	93.35			NaN	NaN	NaN	0	0	Median	6896100	0	6896100	541	245	514	1054	2199;2200	2199		2	9606
EAPPMEKPEVVK	2	0	Oxidation (M)	1368.6959	0.69590241	249	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	5	0					1	12.7	12.7	3	0.037906	3813	DP1061-10	64.224	39.932			NaN	NaN	NaN	0	0	Median	7762700	0	7762700	542	249	515	1055	2201;2202	2202		2	9606
EAQELSQNSAIK	1	0	Unmodified	1316.6572	0.65720872	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0.816	1	1	1			13.682	13.682	2	0.00014401	3939	DP1061-7	178.84	87.524			NaN	NaN	NaN	0	0	Median	57115000	0	57115000	543	508	516	1056;1057;1058	2203;2204;2205;2206;2207;2208	2206		6	9606
EAQSSQATPVQTSQPDSSNIVK	1	0	Unmodified	2301.1084	0.10844742	408	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	1	0	1					14.911	14.911	2	0.00050533	4780	DP1061-6	94.487	69.293			NaN	NaN	NaN	0	0	Median	0	0	0	544	408	517	1059	2209	2209		1	9606
EARQKLEMMIK	2	1	2 Oxidation (M)	1407.7214	0.72140566	119	P12757	SKIL	Ski-like protein	yes	yes	0	2	2	1	0	1					17.252	17.252	2	0.023224	7333	DP1061-6	61.78	18.01			NaN	NaN	NaN	0	0	Median	2907400	2907400	0	545	119	518	1060	2210	2210	165;166	1	9606
EASEDASALGSSSYK	1	0	Unmodified	1500.658	0.65799658	557	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	2	0		1				14.601	14.601	2	0.0097696	5298	DP1061-7	89.43	50.626			NaN	NaN	NaN	0	0	Median	0	0	0	546	557	519	1061	2211	2211		1	9606
EASFEYLQNEGER	0	1	Unmodified	1570.69	0.68996541	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.33	0.471	2	1				17.436	17.436	2	1.0704E-104	7431	DP1061-6	261.87	235.82			0.86897	0.87334	6.0251	2	0	Median	1354300000	720920000	633400000	547	309;34	520	1062;1063;1064	2212;2213;2214;2215;2216;2217;2218;2219;2220;2221	2215		10	9606
EATVISEQK	1	0	Unmodified	1003.5186	0.51858998	419	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	3	0			1			12.549	12.549	2	0.03151	2913	DP1061-8	93.143	46.061			NaN	NaN	NaN	0	0	Median	0	0	0	548	419	521	1065	2222	2222		1	9606
EAVLSQSQHSLGGHR	0	1	Unmodified	1604.8019	0.8019159	495	Q9H6E5	TUT1	Speckle targeted PIP5K1A-regulated poly(A) polymerase	yes	yes	0	0	0	2	0		1				12.76	12.76	3	0.0029689	2911	DP1061-7	86.756	44.281			NaN	NaN	NaN	0	0	Median	6958000	0	6958000	549	495	522	1066	2223	2223		1	9606
EAVVQEPER	0	1	Unmodified	1055.5247	0.52473799	448	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	2	0		1				12.944	12.944	2	0.0034578	3142	DP1061-7	116.37	55.894			NaN	NaN	NaN	0	0	Median	5982300	0	5982300	550	448	523	1067	2224;2225	2224		2	9606
EAYPGDVFYLHSR	0	1	Unmodified	1552.731	0.73104237	144	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.106	18.106	3	0.015632	8944	DP1061-8	78.529	34.731			0.57427	0.62113	NaN	1	0	Median	27459000	12517000	14942000	551	144	524	1068	2226	2226		0	9606
ECCQPVLVYIPPQAELR	0	1	Unmodified	2071.0231	0.023066988	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.43	0.728	5	1	1			21.161	21.161	2;3	1.2223E-30	11085	DP1061-6	175.88	175.88			0.71844	0.77592	11.734	5	0	Median	235210000	156800000	78410000	552	309	525	1069;1070;1071;1072;1073;1074;1075	2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242	2228		15	9606
ECFVCTACR	0	1	Unmodified	1201.4678	0.46783351	332	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		14.867	14.867	2	0.0050127	5653	DP1061-9	93.429	76.955			1.1188	1.1962	NaN	1	0	Median	8158600	3715500	4443100	553	332	526	1076	2243	2243		1	9606
ECPSDECGAGVFMASHFDR	0	1	Oxidation (M)	2186.8456	0.84557291	260	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	1	0	5	0					1	23.446	23.446	3	0.00052936	11945	DP1061-10	100.27	95.75			NaN	NaN	NaN	0	0	Median	14529000	0	14529000	554	260	527	1077	2244;2245	2245	316	2	9606
EDGELNLMK	1	0	Oxidation (M)	1063.4856	0.48557529	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	1	0	1					14.513	14.513	2	0.020816	4332	DP1061-6	78.113	27.047			NaN	NaN	NaN	0	0	Median	6448100	0	6448100	555	559	528	1078	2246	2246	653	1	9606
EDGELNLMKK	2	0	Oxidation (M)	1191.5805	0.58053831	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	1	1	0	1					12.745	12.745	2	0.0027901	2434	DP1061-6	93.429	43.388			NaN	NaN	NaN	0	0	Median	1599100	0	1599100	556	559	529	1079	2247	2247	653	1	9606
EDGLAQQQTQLNLR	0	1	Unmodified	1612.8169	0.81689726	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.759	16.759	2	1.1814E-05	6729	DP1061-6	136.48	98.481			NaN	NaN	NaN	0	0	Median	4873200	0	4873200	557	194	530	1080	2248;2249;2250;2251	2250		4	9606
EDGNEEDKENQGDETQGQQPPQR	1	1	Unmodified	2627.0968	0.096773109	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		12.478	12.478	3	8.0702E-130	2665	DP1061-9	271.92	271.92			17.452	17.916	NaN	1	0	Median	98486000	7989700	90496000	558	262	531	1081	2252;2253;2254;2255;2256	2253		5	9606
EDGNEEDKENQGDETQGQQPPQRR	1	2	Unmodified	2783.1979	0.19788414	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	2	4	0				1		12.412	12.412	4	0.0033312	2616	DP1061-9	73.11	53.355			NaN	NaN	NaN	0	0	Median	17937000	0	17937000	559	262	532	1082	2257;2258	2257		2	9606
EDITQSAQHALR	0	1	Unmodified	1367.6793	0.67934115	306	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				14.726	14.726	2	0.0015485	5451	DP1061-7	112.3	58.229			NaN	NaN	NaN	0	0	Median	5837000	0	5837000	560	306	533	1083	2259;2260	2259		2	9606
EDLQLDKPASGVK	2	0	Unmodified	1398.7355	0.73545904	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		2				14.261	14.261	2	0.0029986	4829	DP1061-7	122.69	49.457			NaN	NaN	NaN	0	0	Median	0	0	0	561	269	534	1084;1085	2261;2262	2261		2	9606
EDLTEIR	0	1	Unmodified	874.43961	0.43961137	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		15.168	15.168	2	0.042533	6017	DP1061-9	76.035	35.462			NaN	NaN	NaN	0	0	Median	28269000	0	28269000	562	90	535	1086	2263;2264	2264		2	9606
EDLTEIRDMLLANKVPAAAR	1	2	Oxidation (M)	2241.1787	0.17871601	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	1	2	4	0				1		19.259	19.259	3	0.00033132	11151	DP1061-9	119.51	98.911			NaN	NaN	NaN	0	0	Median	31929000	0	31929000	563	90	536	1087	2265;2266	2265	108	2	9606
EDMAALEKDYEEVGVDSVEGEGEEEGEEY	1	0	Oxidation (M)	3251.2984	0.29835377	264;394	P68363;Q71U36	TUBA1B;TUBA1A	Tubulin alpha-1B chain;Tubulin alpha-1A chain	no	no	0	1	1	4	0				1		20.679	20.679	3	0.014495	13073	DP1061-9	53.262	42.338			NaN	NaN	NaN	0	0	Median	7599400	0	7599400	564	264;394	537	1088	2267	2267	324	1	9606
EDQLLCTDCYSNEYSSK	1	0	Unmodified	2110.846	0.84595006	332	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				2		17.805	17.805	2	2.3649E-06	9379	DP1061-9	129.77	86.983			NaN	NaN	NaN	0	0	Median	0	0	0	565	332	538	1089;1090	2268;2269	2269		2	9606
EDQTEYLEER	0	1	Unmodified	1310.5626	0.56263964	101	P08238;Q58FF7;P07900;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	yes	no	0	0	0	2	0		1				15.49	15.49	2	0.0078928	6306	DP1061-7	94.692	59.423			NaN	NaN	NaN	0	0	Median	5987100	0	5987100	566	101	539	1091	2270	2270		1	9606
EDVFVHQTAIK	1	0	Unmodified	1285.6667	0.6666512	262;126	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	0	4	0				1		15.025	15.025	2	0.020576	5893	DP1061-9	79.986	27.269			NaN	NaN	NaN	0	0	Median	7552400	0	7552400	567	126;262	540	1092	2271	2271		1	9606
EEAISNMVVALK	1	0	Oxidation (M)	1318.6803	0.68025235	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					16.608	16.608	2	8.481E-07	6401	DP1061-6	130.98	76.26			0.87411	0.97708	NaN	1	0	Median	370480000	198140000	172340000	568	309;34	541	1093	2272;2273;2274;2275	2272	28	4	9606
EEAISNMVVALK	1	0	Unmodified	1302.6853	0.68533773	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.33	0.471	2	1				19.022	19.022	2	0.00011251	9372	DP1061-6	123.35	100.78			0.60972	0.68155	NaN	1	0	Median	68592000	37543000	31049000	569	309;34	541	1094;1095;1096	2276;2277;2278;2279	2277		4	9606
EEAQALEDLTGFK	1	0	Unmodified	1449.6987	0.69873919	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.25	0.433	3	1				19.928	19.928	2	4.0166E-05	11906	DP1061-7	131.82	86.451			NaN	NaN	NaN	0	0	Median	21105000	0	21105000	570	182	542	1097;1098;1099;1100	2280;2281;2282;2283	2283		4	9606
EEAQSLEDLAGFK	1	0	Unmodified	1435.6831	0.68308912	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1.5	0.5	1	1				19.493	19.493	2	4.7102E-05	11105	DP1061-7	130.1	80.747			NaN	NaN	NaN	0	0	Median	20152000	0	20152000	571	182	543	1101;1102	2284;2285;2286;2287	2286		4	9606
EEEEEEEEDQEGDRETTIR	0	2	Unmodified	2350.9521	0.95206593	0	A0A0B4J2E5;Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	no	0	0	1	1	0	2					13.835	13.835	3	0.0025174	3567	DP1061-6	88.768	65.783			NaN	NaN	NaN	0	0	Median	0	0	0	572	0	544	1103;1104	2288;2289	2288		2	9606
EEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	261	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	4	0				2		23.912	23.912	2	9.3177E-07	16942	DP1061-9	102.73	90.167			2.5747	2.6914	NaN	1	0	Median	6878900	1820300	5058600	573	261	545	1105;1106	2290;2291;2292	2291	318	3	9606
EEEMGEEEEVER	0	1	Oxidation (M)	1509.5777	0.57769735	343	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	1	0	1					12.988	12.988	2	0.0016767	2672	DP1061-6	108.43	69.681			NaN	NaN	NaN	0	0	Median	2729300	0	2729300	574	343	546	1107	2293	2293	455	1	9606
EEGIGPENLR	0	1	Unmodified	1112.5462	0.54620171	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.612	15.612	2	0.0012812	5201	DP1061-6	108.98	81.153			0.7699	0.78195	NaN	1	0	Median	286260000	157380000	128870000	575	309	547	1108	2294;2295;2296;2297	2297		4	9606
EEGTPLTLYYSHWR	0	1	Unmodified	1750.8315	0.83148469	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2.33	0.471		2	1			19.467	19.467	2;3	0.00014076	10553	DP1061-8	114.87	85.513			NaN	NaN	NaN	0	0	Median	48818000	0	48818000	576	555	548	1109;1110;1111	2298;2299;2300;2301;2302	2301		5	9606
EELEALFLPYDLK	1	0	Unmodified	1578.8181	0.81812604	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				23.381	23.381	2	6.8982E-05	15830	DP1061-7	167.12	115.84			NaN	NaN	NaN	0	0	Median	4037300	0	4037300	577	485	549	1112	2303;2304	2304		2	9606
EELTWLQSLR	0	1	Unmodified	1273.6667	0.6666512	520	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				21.134	21.134	2	0.00018843	13311	DP1061-7	130.75	81.33			NaN	NaN	NaN	0	0	Median	3270500	0	3270500	578	520	550	1113	2305;2306	2305		2	9606
EENKSDMNTVLNYIFSHAQVTK	2	0	Oxidation (M)	2583.2275	0.22751669	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					23.388	23.388	4	0.011304	13703	DP1061-6	43.216	43.216			0.67489	0.71848	NaN	1	0	Median	10082000	5096000	4985500	579	309	551	1114	2307	2307	383	1	9606
EEPVSSGPEEAVGK	1	0	Unmodified	1413.6624	0.66235368	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			14.047	14.047	2	0.035228	4689	DP1061-8	73.666	49.201			NaN	NaN	NaN	0	0	Median	8833800	0	8833800	580	31	552	1115	2308;2309	2309		2	9606
EESQIPVDEVFFHR	0	1	Unmodified	1730.8264	0.82639932	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				19.381	19.381	3	6.5338E-06	10981	DP1061-7	128.57	114.99			NaN	NaN	NaN	0	0	Median	28842000	0	28842000	581	289	553	1116	2310;2311	2310		2	9606
EEYQLVQVEQK	1	0	Unmodified	1391.6933	0.69325988	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				16.623	16.623	2	0.00022059	7846	DP1061-7	128.91	103.1			NaN	NaN	NaN	0	0	Median	14688000	0	14688000	582	508	554	1117	2312;2313	2313		2	9606
EFEEGLVSQYK	1	0	Unmodified	1327.6296	0.62959699	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				17.474	17.474	2	0.00089305	9103	DP1061-7	139.98	87.193			NaN	NaN	NaN	0	0	Median	15872000	0	15872000	583	428	555	1118	2314;2315	2314		2	9606
EFESAIVEAAR	0	1	Unmodified	1220.6037	0.60371659	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				17.566	17.566	2	0.018759	9126	DP1061-7	81.525	47.138			NaN	NaN	NaN	0	0	Median	7452100	0	7452100	584	347	556	1119	2316	2316		1	9606
EFFEIMPNYAK	1	0	Oxidation (M)	1403.6431	0.64313856	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		19.187	19.187	2	0.002884	10202	DP1061-8	85.67	85.67			0.83429	0.89115	NaN	1	0	Median	60581000	28581000	32001000	585	87	557	1120;1121	2317;2318;2319;2320	2319	104	4	9606
EFFEIMPNYAK	1	0	Unmodified	1387.6482	0.64822394	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.612	20.612	2	0.00028452	12071	DP1061-8	119.62	119.62			0.98999	1.0575	NaN	1	0	Median	25747000	14380000	11367000	586	87	557	1122	2321;2322;2323;2324	2324		4	9606
EFFNGKEPSR	1	1	Unmodified	1209.5778	0.57783619	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			13.966	13.966	3	0.0017361	4755	DP1061-8	105.98	79.189			NaN	NaN	NaN	0	0	Median	10381000	0	10381000	587	112	558	1123	2325;2326	2326		2	9606
EFHLNESGDPSSK	1	0	Unmodified	1445.6423	0.64228694	107	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				1		14.263	14.263	2	0.0069523	4891	DP1061-9	100.69	64.102			NaN	NaN	NaN	0	0	Median	0	0	0	588	107	559	1124	2327	2327		1	9606
EFNAEVHR	0	1	Unmodified	1000.4726	0.47264284	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		12.586	12.586	2	2.9085E-05	2824	DP1061-9	145.34	124.64			NaN	NaN	NaN	0	0	Median	29936000	0	29936000	589	185	560	1125	2328;2329	2328		2	9606
EFRPEDQPWLLR	0	2	Unmodified	1584.8049	0.80487601	157	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	4	0				1		19.323	19.323	3	0.00039446	11304	DP1061-9	114.86	70.406			NaN	NaN	NaN	0	0	Median	9393800	0	9393800	590	157	561	1126	2330;2331	2331		2	9606
EFSFEAWNAK	1	0	Unmodified	1227.556	0.55603812	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				19.905	19.905	2	0.0042025	11729	DP1061-7	109.48	73.145			NaN	NaN	NaN	0	0	Median	3790900	0	3790900	591	269	562	1127	2332	2332		1	9606
EFSGHQGQINDMAFSPDGR	0	1	Oxidation (M)	2107.9018	0.90176588	422	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	1	0	1	0	1					16.002	16.002	3	0.0017988	5846	DP1061-6	88.264	60.564			NaN	NaN	NaN	0	0	Median	5092200	0	5092200	592	422	563	1128	2333;2334;2335	2335	522	3	9606
EGKEEAEETNVLPK	2	0	Unmodified	1571.7679	0.76788138	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	1	0	1					13.926	13.926	2	0.031778	3682	DP1061-6	89.403	44.242			NaN	NaN	NaN	0	0	Median	0	0	0	593	340	564	1129	2336	2336		1	9606
EGLGLDVER	0	1	Unmodified	986.50327	0.50327426	41	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	2	0		1				16.617	16.617	2	0.037073	7795	DP1061-7	75.378	32.312			NaN	NaN	NaN	0	0	Median	7413700	0	7413700	594	41	565	1130	2337	2337		1	9606
EGLPLMVFANWR	0	1	Oxidation (M)	1447.7282	0.7282056	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.33	1.25	1	1		1		22.973	22.973	2	3.8028E-11	14944	DP1061-7	150.36	150.36			0.79282	0.90632	2.7327	3	0	Plateau	65528000	34956000	30572000	595	309	566	1131;1132;1133	2338;2339;2340;2341;2342;2343;2344;2345;2346;2347;2348;2349	2346	384	12	9606
EGLPLMVFANWR	0	1	Unmodified	1431.7333	0.73329097	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	0.5		1	1			23.898	23.898	2	0.00026416	16506	DP1061-7	116.37	116.37			0.84365	0.92073	3.3594	2	0	Median	8842600	4366300	4476400	596	309	566	1134;1135	2350;2351;2352;2353;2354;2355;2356;2357;2358	2353		9	9606
EGNEQLTEEER	0	1	Unmodified	1332.5794	0.57935233	417	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	2	0		1				13.107	13.107	2	0.0030195	3433	DP1061-7	155.06	82.13			NaN	NaN	NaN	0	0	Median	3039400	0	3039400	597	417	567	1136	2359;2360	2360		2	9606
EGPEGFAR	0	1	Unmodified	861.39808	0.39808091	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.707	1	2	1			13.85	13.85	1;2	0.00091422	4245	DP1061-7	101.64	14.777			0.88286	0.86997	5.3177	4	0	Linear	1351300000	702880000	648410000	598	116	568	1137;1138;1139;1140	2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372	2369		12	9606
EGPMFEAMIMNR	0	1	3 Oxidation (M)	1472.6098	0.6098063	39	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	3	0	2	0		1				16.306	16.306	2	0.00048238	7301	DP1061-7	106.2	71.504			NaN	NaN	NaN	0	0	Median	7484100	0	7484100	599	39	569	1141	2373;2374;2375	2373	41;42;43	3	9606
EGPSGSGDSQLSASSR	0	1	Unmodified	1520.6703	0.6702926	304	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	1	0	1					12.961	12.961	2	0.00012887	2631	DP1061-6	107.39	66.307			NaN	NaN	NaN	0	0	Median	1788200	0	1788200	600	304	570	1142	2376	2376		1	9606
EGRPSGEAFVELESEDEVK	1	1	Unmodified	2105.9753	0.97530798	153	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	1	4	0				1		17.637	17.637	3	9.9882E-08	9120	DP1061-9	127.32	103.03			NaN	NaN	NaN	0	0	Median	7698200	0	7698200	601	153	571	1143	2377;2378	2377		2	9606
EGSASTEVLR	0	1	Unmodified	1047.5197	0.51965261	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					13.333	13.333	2	0.0015927	3065	DP1061-6	117.89	63.278			NaN	NaN	NaN	0	0	Median	9014400	0	9014400	602	66	572	1144	2379;2380	2380		2	9606
EGSIEIDIPVPK	1	0	Unmodified	1295.6973	0.69728262	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.75	0.433			1	3		19.53	19.53	2	0.00020524	11520	DP1061-9	123.86	84.559			0.81562	0.87121	NaN	1	0	Median	176760000	90101000	86656000	603	455	573	1145;1146;1147;1148	2381;2382;2383;2384;2385;2386;2387;2388	2385		8	9606
EGSLSPASVGSDTLSDLGISSLQDGLALHIR	0	1	Unmodified	3094.5782	0.57823671	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					24.168	24.168	3	4.8905E-08	14337	DP1061-6	94.606	71.619			NaN	NaN	NaN	0	0	Median	2335900	2335900	0	604	309	574	1149;1150;1151	2389;2390;2391	2390		3	9606
EGSLVINSK	1	0	Unmodified	945.51311	0.51311067	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					13.664	13.664	2	0.0010215	3385	DP1061-6	124.08	76.165			NaN	NaN	NaN	0	0	Median	14474000	0	14474000	605	559	575	1152	2392;2393	2392		2	9606
EGTEDTVMQLDALDTHHR	0	1	Oxidation (M)	2082.9276	0.92764628	569				yes	yes	0	1	0	3	0			1			17.026	17.026	2	0.025461	7832	DP1061-8	58.132	32.401	+		0.87841	0.94317	NaN	1	0	Median	43179000	23670000	19509000	606	569	576	1153	2394	2394	664	1	9606
EHALLAYTLGVK	1	0	Unmodified	1313.7343	0.73433683	263	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	0				1		17.96	17.96	2	9.0493E-08	9514	DP1061-9	141.95	141.95			2.1676	2.2658	NaN	1	0	Median	33571000	9262000	24309000	607	263	577	1154	2395;2396;2397;2398	2396		4	9606
EHNPTQYEER	0	1	Unmodified	1301.5636	0.56364269	486	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	4	0				1		12.423	12.423	3	0.047879	2655	DP1061-9	60.398	34.961			NaN	NaN	NaN	0	0	Median	5466400	0	5466400	608	486	578	1155	2399	2399		1	9606
EIAQDFKTDLR	1	1	Unmodified	1334.683	0.68302954	267	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	5	0					1	23.788	23.788	3	0.012514	13131	DP1061-10	73.781	13.851			NaN	NaN	NaN	0	0	Median	52056000	0	52056000	609	267	579	1156	2400;2401;2402;2403	2403		4	9606
EIEFLPSR	0	1	Unmodified	989.5182	0.51819605	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.095	18.095	2	0.0080674	8274	DP1061-6	90.777	47.71			0.81309	0.93934	NaN	1	0	Median	12198000	6064700	6133100	610	34	580	1157	2404;2405	2405		2	9606
EIELPSGQLMGLFNR	0	1	Oxidation (M)	1718.8662	0.86615564	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				21.567	21.567	2	0.00019335	13786	DP1061-7	112.13	57.866			NaN	NaN	NaN	0	0	Median	12164000	0	12164000	611	485	581	1158	2406;2407	2406	580	2	9606
EIETYHNLLEGGQEDFESSGAGK	1	0	Unmodified	2509.1245	0.12449141	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.17	0.373	5	1				19.803	19.803	2;3	6.616699999999999E-28	8962	DP1061-6	241.87	182.62		+	NaN	NaN	NaN	0	0	Median	43374000	43374000	0	612	19	582	1159;1160;1161;1162;1163;1164	2408;2409;2410;2411;2412;2413;2414;2415;2416;2417	2409		10	9606
EIFLSQPILLELEAPLK	1	0	Unmodified	1952.1234	0.12341618	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.67	0.471			2	4		25.074	25.074	2;3	6.3944E-09	17081	DP1061-8	176.87	141.21			NaN	NaN	NaN	0	0	Median	146720000	0	146720000	613	163;233;234	583	1165;1166;1167;1168;1169;1170	2418;2419;2420;2421;2422;2423;2424;2425;2426;2427;2428;2429;2430;2431	2419		14	9606
EIGVQNVK	1	0	Unmodified	885.49198	0.4919813	122	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	5	0					1	13.362	13.362	2	0.0027227	3915	DP1061-10	121.29	70.256			NaN	NaN	NaN	0	0	Median	17229000	0	17229000	614	122	584	1171	2432;2433	2433		2	9606
EIGYPVMIK	1	0	Unmodified	1048.5627	0.5627034	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.175	18.175	2	0.047255	9024	DP1061-8	67.032	52.094			0.73635	0.78654	NaN	1	0	Median	60664000	31481000	29183000	615	86	585	1172	2434	2434		1	9606
EIIDLVLDR	0	1	Unmodified	1084.6128	0.61282471	264;394;465	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.67	0.471			1	2		20.895	20.895	1;2	2.7818E-16	12379	DP1061-8	171.53	171.53			3.4239	3.626	4.8424	2	0	Median	345100000	72942000	272150000	616	264;394;465	586	1173;1174;1175	2435;2436;2437;2438;2439;2440;2441;2442;2443	2436		9	9606
EIINTYTEAVQTVDPFK	1	0	Unmodified	1966.9888	0.9887732	502	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	2	0		1				21.701	21.701	2	3.6074E-08	14035	DP1061-7	135.81	86.314			NaN	NaN	NaN	0	0	Median	1942100	0	1942100	617	502	587	1176	2444;2445	2444		2	9606
EILGTAQSVGCNVDGR	0	1	Unmodified	1674.7995	0.79953264	152	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	1	0	2					16.515	16.515	2	0.022335	6426	DP1061-6	83.204	43.938			NaN	NaN	NaN	0	0	Median	0	0	0	618	152	588	1177;1178	2446;2447	2446		2	9606
EILQNTTSLK	1	0	Unmodified	1145.6292	0.62920306	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					15.192	15.192	2	0.012938	4968	DP1061-6	88.177	37.474			NaN	NaN	NaN	0	0	Median	9418700	0	9418700	619	68	589	1179	2448;2449	2448		2	9606
EILTQGQINSTSGLNK	1	0	Unmodified	1701.8897	0.88972785	381	Q5VWQ0	RSBN1	Round spermatid basic protein 1	yes	yes	0	0	0	2	0		2				16.388	16.388	2	5.6557E-07	7508	DP1061-7	151.26	46.062			NaN	NaN	NaN	0	0	Median	0	0	0	620	381	590	1180;1181	2450;2451	2450		2	9606
EIMAPWAQTVVTGR	0	1	Oxidation (M)	1573.7923	0.79226242	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.347	19.347	2	0.00017961	9738	DP1061-6	109.72	69.706			0.61716	0.71357	NaN	1	0	Median	11958000	6425600	5532400	621	34	591	1182	2452;2453;2454	2454	29	3	9606
EIPSATQSPISK	1	0	Unmodified	1256.6612	0.66123147	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				14.765	14.765	2	0.0013514	5389	DP1061-7	113.69	32.932			NaN	NaN	NaN	0	0	Median	23534000	0	23534000	622	466	592	1183	2455;2456	2455		2	9606
EIQLEISGK	1	0	Unmodified	1015.555	0.55497548	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				16.547	16.547	2	0.0008214	7668	DP1061-7	126.52	9.1232			NaN	NaN	NaN	0	0	Median	17789000	0	17789000	623	555	593	1184	2457;2458	2457		2	9606
EIQTAVR	0	1	Unmodified	815.45012	0.45011648	57;96	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					1	12.49	12.49	2	0.033665	3037	DP1061-10	86.866	19.831			NaN	NaN	NaN	0	0	Median	16409000	0	16409000	624	57;96	594	1185	2459	2459		1	9606
EITALAPSTMK	1	0	Oxidation (M)	1176.606	0.60602477	261;244	P63267;P68133;P68032;P62736;P63261;P60709	ACTG2;ACTA1;ACTC1;ACTA2;ACTG1;ACTB	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	no	no	0	1	0	4	0				1		14.9	14.9	2	0.052125	5633	DP1061-9	55.461	15.394			1.6582	1.7334	NaN	1	0	Median	15780000	5490400	10290000	625	244;261	595	1186	2460	2460		1	9606
EIVHLQAGQCGNQIGAK	1	0	Unmodified	1821.9156	0.91556545	265;81	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	3.5	0.5			2	2		15.028	15.028	2;3	3.7657E-153	5735	DP1061-9	323.44	0			4.2775	4.7335	5.7179	3	0	Plateau	138160000	28828000	109340000	626	265;81	596	1187;1188;1189;1190	2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474	2472		14	9606
EKAQALEDLAGFK	2	0	Unmodified	1418.7405	0.74054442	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		1				17.513	17.513	2	0.029381	9075	DP1061-7	91.549	64.66			NaN	NaN	NaN	0	0	Median	6577500	0	6577500	627	182	597	1191	2475;2476	2476		2	9606
EKAQALEELTGFR	1	1	Unmodified	1490.7729	0.77290718	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				17.946	17.946	3	0.022892	9577	DP1061-7	65.809	36.265			NaN	NaN	NaN	0	0	Median	8033900	0	8033900	628	182	598	1192	2477	2477		1	9606
EKPYFPIPEEYTFIQNVPLEDR	1	1	Unmodified	2723.3483	0.34828376	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2.5	0.5		1	1			22.016	22.016	3	9.8728E-05	14333	DP1061-7	108.14	50.037			NaN	NaN	NaN	0	0	Median	19922000	0	19922000	629	281	599	1193;1194	2478;2479	2478		2	9606
EKYEITEQR	1	1	Unmodified	1194.5881	0.58806652	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				1		12.928	12.928	3	0.0046536	3272	DP1061-9	91.087	27.903			NaN	NaN	NaN	0	0	Median	6761400	0	6761400	630	287	600	1195	2480;2481	2481		2	9606
ELAAQLNEEAK	1	0	Unmodified	1214.6143	0.61428128	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					14.812	14.812	2	0.0024576	4603	DP1061-6	166.07	87.802			NaN	NaN	NaN	0	0	Median	19957000	0	19957000	631	559	601	1196	2482;2483	2483		2	9606
ELAAQLNEEAKR	1	1	Unmodified	1370.7154	0.7153923	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	0	2					14.039	14.039	2;3	0.00078996	3767	DP1061-6	95.477	49.414			NaN	NaN	NaN	0	0	Median	17500000	0	17500000	632	559	602	1197;1198	2484;2485;2486	2484		3	9606
ELAEDGYSGVEVR	0	1	Unmodified	1422.6627	0.66268803	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	1.73	1				3	17.568	17.568	2	3.815E-05	6410	DP1061-6	132.32	59.994			NaN	NaN	NaN	0	0	Median	18683000	1678100	17005000	633	140	603	1199;1200;1201;1202	2487;2488;2489;2490;2491;2492	2491		6	9606
ELAMQTFGVLK	1	0	Oxidation (M)	1251.6533	0.65330932	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	1	0	3	0			1			18.063	18.063	2	0.0044524	8827	DP1061-8	94.409	48.457			NaN	NaN	NaN	0	0	Median	16305000	0	16305000	634	515	604	1203	2493;2494	2494	624	2	9606
ELAMQTFGVLK	1	0	Unmodified	1235.6584	0.6583947	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			19.853	19.853	2	0.0011762	11147	DP1061-8	117.81	51.012			NaN	NaN	NaN	0	0	Median	10134000	0	10134000	635	515	604	1204	2495;2496	2496		2	9606
ELAPAVSVLQLFCSSPK	1	0	Unmodified	1844.9706	0.97062071	526	Q9UBF2;Q9Y678	COPG2;COPG1	Coatomer subunit gamma-2;Coatomer subunit gamma-1	yes	no	0	0	0	2	0		1				23.634	23.634	2	0.02117	16145	DP1061-7	82.908	51.722			NaN	NaN	NaN	0	0	Median	0	0	0	636	526	605	1205	2497	2497		1	9606
ELAPYDENWFYTR	0	1	Unmodified	1702.7627	0.76273643	168	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					3	24.987	24.987	2	0.00052102	13971	DP1061-10	118.9	79.032			NaN	NaN	NaN	0	0	Median	0	0	0	637	168	606	1206;1207;1208	2498;2499;2500	2500		3	9606
ELAQIAGRPTEDEDEKEK	2	1	Unmodified	2056.9913	0.99129239	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	2	3	0			1			13.434	13.434	3	0.0082664	3913	DP1061-8	88.427	56.813			NaN	NaN	NaN	0	0	Median	12032000	0	12032000	638	43	607	1209	2501;2502	2502		2	9606
ELAQQVQQVAAEYCR	0	1	Unmodified	1791.8574	0.85738187	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	4	0				1		19.269	19.269	2	0.0018008	11263	DP1061-9	96.64	51.563			NaN	NaN	NaN	0	0	Median	5280200	0	5280200	639	130	608	1210	2503	2503		1	9606
ELAQQVQQVADDYGK	1	0	Unmodified	1690.8162	0.81622856	440	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			18.504	18.504	2	4.2446E-05	9406	DP1061-8	160.52	120.94			NaN	NaN	NaN	0	0	Median	9159100	0	9159100	640	440	609	1211	2504	2504		1	9606
ELAYQTFEVLR	0	1	Unmodified	1367.7085	0.70851601	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				20.247	20.247	2	2.3653E-06	12136	DP1061-7	193.38	106.55			NaN	NaN	NaN	0	0	Median	10362000	0	10362000	641	313	610	1212	2505;2506	2505		2	9606
ELCQQIHAECKR	1	1	Unmodified	1570.7344	0.73442996	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	1	2	0		1				12.533	12.533	3	0.0025469	2667	DP1061-7	84.718	21.918			NaN	NaN	NaN	0	0	Median	5650400	0	5650400	642	402	611	1213	2507	2507		1	9606
ELDALDANDELTPLGR	0	1	Unmodified	1740.853	0.853008	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.33	0.471	2	1				20.212	20.212	2	4.99E-15	12042	DP1061-7	200.82	107.72			NaN	NaN	NaN	0	0	Median	12415000	0	12415000	643	296	612	1214;1215;1216	2508;2509;2510;2511	2510		4	9606
ELDLYDNQIK	1	0	Unmodified	1249.619	0.6190323	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		17.85	17.85	2	7.4848E-05	9444	DP1061-9	166.09	86.182			NaN	NaN	NaN	0	0	Median	23635000	0	23635000	644	360	613	1217	2512;2513	2513		2	9606
ELEFYLR	0	1	Unmodified	968.49673	0.49673232	235	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	24.666	24.666	2	0.048627	13032	DP1061-10	74.335	16.872			NaN	NaN	NaN	0	0	Median	27657000	0	27657000	645	235	614	1218	2514	2514		1	9606
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	1	0	Unmodified	3054.4869	0.48691928	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			21.904	21.904	3	5.8406E-54	13682	DP1061-8	220.83	196.48			NaN	NaN	NaN	0	0	Median	126210000	0	126210000	646	108	615	1219	2515;2516	2516		2	9606
ELFQTPCTDNPTTDEK	1	0	Unmodified	1894.8255	0.82547262	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					17.1	17.1	2	0.00016383	7019	DP1061-6	106.79	78.924			NaN	NaN	NaN	0	0	Median	21485000	0	21485000	647	182	616	1220	2517;2518	2517		2	9606
ELFQTPDHTEESTTDDKTTK	2	0	Unmodified	2322.0499	0.049929483	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				14.331	14.331	3	0.001859	4228	DP1061-6	93.5	76.13			NaN	NaN	NaN	0	0	Median	13060000	0	13060000	648	182	617	1221;1222	2519;2520;2521	2520		3	9606
ELFQTPGHTEEAVAAGK	1	0	Unmodified	1783.8741	0.87407779	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.67	0.471	1	2				15.883	15.883	2;3	3.2968999999999995E-21	6745	DP1061-7	212.1	147.73			NaN	NaN	NaN	0	0	Median	78562000	0	78562000	649	182	618	1223;1224;1225	2522;2523;2524;2525;2526;2527;2528	2528		7	9606
ELFQTPGHTEESMTDDKITEVSCK	2	0	Oxidation (M)	2797.2422	0.24224006	182	P46013	MKI67	Antigen KI-67	yes	no	0	1	1	2	0		2				16.125	16.125	3;4	8.7413E-05	7064	DP1061-7	107.56	84.349			NaN	NaN	NaN	0	0	Median	29816000	0	29816000	650	182	619	1226;1227	2529;2530;2531;2532;2533	2530	224	5	9606
ELFQTPGPSEESMTDEK	1	0	Oxidation (M)	1939.8357	0.83570295	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				16.824	16.824	2	1.4966E-07	7956	DP1061-7	147.52	117.19			NaN	NaN	NaN	0	0	Median	16868000	0	16868000	651	182	620	1228	2534;2535	2534	225	2	9606
ELFQTPGTDKPTTDEK	2	0	Unmodified	1805.8683	0.86832371	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				15.244	15.244	3	0.019631	5968	DP1061-7	71.354	21.759			NaN	NaN	NaN	0	0	Median	0	0	0	652	182	621	1229;1230	2536;2537	2537		2	9606
ELFQTPVCTDKPTTHEK	2	0	Unmodified	2029.9779	0.97789093	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				14.785	14.785	3	0.0035288	5556	DP1061-7	83.751	56.036			NaN	NaN	NaN	0	0	Median	9165300	0	9165300	653	182	622	1231	2538;2539	2538		2	9606
ELGIQVHSVTR	0	1	Unmodified	1237.6779	0.67788459	448	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	2	0		1				14.886	14.886	2	0.011346	5663	DP1061-7	87.806	42.826			NaN	NaN	NaN	0	0	Median	9715800	0	9715800	654	448	623	1232	2540;2541	2540		2	9606
ELGPDGEEAEGPGAGDGPPR	0	1	Unmodified	1905.8341	0.83406347	133	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	4	0				2		15.747	15.747	2	0.019267	6637	DP1061-9	78.932	54.58			NaN	NaN	NaN	0	0	Median	0	0	0	655	133	624	1233;1234	2542;2543	2542		2	9606
ELILFSNSDNER	0	1	Unmodified	1435.6943	0.69432251	115	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	yes	no	0	0	0	2	0		1				18.932	18.932	2	0.00012333	10461	DP1061-7	130.66	76.905			NaN	NaN	NaN	0	0	Median	5358000	0	5358000	656	115	625	1235	2544;2545	2544		2	9606
ELIPNIPFQMLLR	0	1	Oxidation (M)	1598.8854	0.88543452	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	0.894		2	1	2		23.162	23.162	2;3	0.0013631	15176	DP1061-8	93.667	93.667			0.84374	0.85116	5.8693	3	0	Plateau	424330000	230200000	194130000	657	116	626	1236;1237;1238;1239;1240	2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559	2556	151	14	9606
ELIPNIPFQMLLR	0	1	Unmodified	1582.8905	0.8905199	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			24.392	24.392	2	6.174E-05	16733	DP1061-7	122.94	122.94			0.82105	0.9101	NaN	1	0	Median	32130000	18380000	13750000	658	116	626	1241;1242;1243	2560;2561;2562;2563;2564;2565	2560		6	9606
ELKEQLGEEIDSK	2	0	Unmodified	1516.7621	0.76206772	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				15.368	15.368	3	0.014772	6035	DP1061-7	71.558	52.281			NaN	NaN	NaN	0	0	Median	42020000	0	42020000	659	508	627	1244	2566;2567	2567		2	9606
ELLAALQK	1	0	Unmodified	884.53312	0.53311783	404	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				16.812	16.812	2	0.027655	8233	DP1061-7	81.381	0			NaN	NaN	NaN	0	0	Median	9600300	0	9600300	660	404	628	1245	2568	2568		1	9606
ELLADQNLK	1	0	Unmodified	1042.5659	0.56587452	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				16.25	16.25	2	0.025988	7425	DP1061-7	78.149	24.374			NaN	NaN	NaN	0	0	Median	5456500	0	5456500	661	339	629	1246	2569	2569		1	9606
ELLDLAMQNAWFR	0	1	Oxidation (M)	1621.7923	0.79226242	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	1	0	2	0		1				22.396	22.396	2	2.0493E-05	14771	DP1061-7	135.43	88.127			NaN	NaN	NaN	0	0	Median	3062600	0	3062600	662	402	630	1247	2570;2571;2572;2573	2572	500	4	9606
ELLEQISAFDNVPR	0	1	Unmodified	1629.8362	0.83623572	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	4	0				1		21.074	21.074	2	1.7934E-17	13548	DP1061-9	218.07	150.87			NaN	NaN	NaN	0	0	Median	19162000	0	19162000	663	519	631	1248	2574;2575;2576;2577;2578	2575		5	9606
ELLIQIFSTPR	0	1	Unmodified	1315.75	0.7499869	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		22.384	22.384	2	0.00034151	15059	DP1061-9	137.95	88.535			NaN	NaN	NaN	0	0	Median	19461000	0	19461000	664	427	632	1249	2579;2580	2579		2	9606
ELLITDLLPDNR	0	1	Unmodified	1410.7718	0.77184455	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2.5	0.5		1	1			22.316	22.316	2	1.7798E-05	14656	DP1061-7	180.09	119.41			NaN	NaN	NaN	0	0	Median	18092000	0	18092000	665	289	633	1250;1251	2581;2582;2583	2582		3	9606
ELLPLIYHHLLR	0	1	Unmodified	1515.8926	0.89256881	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0				2		19.674	19.674	3	0.0041848	11835	DP1061-9	87.568	35.496			NaN	NaN	NaN	0	0	Median	6747700	0	6747700	666	318	634	1252;1253	2584;2585	2584		2	9606
ELMELLK	1	0	Oxidation (M)	890.47831	0.47830507	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		2				16.288	16.288	2	0.015763	7391	DP1061-7	92.467	26.795			NaN	NaN	NaN	0	0	Median	0	0	0	667	512	635	1254;1255	2586;2587	2587	613	2	9606
ELMTHHVHTYGLIMGGSNR	0	1	2 Oxidation (M)	2184.0204	0.020441226	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	2	0	3	0			2			14.377	14.377	3;4	0.00088162	5183	DP1061-8	93.181	56.585			NaN	NaN	NaN	0	0	Median	93320000	0	93320000	668	515	636	1256;1257	2588;2589	2588	625;626	2	9606
ELNSTYSEQDPLLK	1	0	Unmodified	1635.7992	0.79918151	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					17.781	17.781	2	1.866E-05	7927	DP1061-6	125.23	79.628			NaN	NaN	NaN	0	0	Median	10420000	0	10420000	669	68	637	1258	2590	2590		1	9606
ELPVLWHQCLLTLVQR	0	1	Unmodified	2004.0979	0.097886911	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		22.077	22.077	3	0.00076257	14808	DP1061-9	95.428	57.336			NaN	NaN	NaN	0	0	Median	2033300	0	2033300	670	329	638	1259	2591;2592	2592		2	9606
ELQCLTPR	0	1	Unmodified	1015.5121	0.51206481	297	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	3	0			1			14.986	14.986	2	0.0076716	5891	DP1061-8	111.01	43.975			NaN	NaN	NaN	0	0	Median	0	0	0	671	297	639	1260	2593	2593		1	9606
ELQDAFSR	0	1	Unmodified	964.46141	0.46140945	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		15.69	15.69	2	7.0479E-05	6543	DP1061-9	136.11	63.975			NaN	NaN	NaN	0	0	Median	15520000	0	15520000	672	462	640	1261	2594;2595	2595		2	9606
ELQSAVPR	0	1	Unmodified	898.48723	0.48723027	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		13.426	13.426	2	0.013077	3887	DP1061-9	102.71	39.566			NaN	NaN	NaN	0	0	Median	19936000	0	19936000	673	329	641	1262	2596;2597	2596		2	9606
ELSDLESAR	0	1	Unmodified	1018.4931	0.49310351	149	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					14.976	14.976	2	0.010494	4792	DP1061-6	98.629	10.875			NaN	NaN	NaN	0	0	Median	10665000	0	10665000	674	149	642	1263	2598;2599	2598		2	9606
ELSPAALEK	1	0	Unmodified	956.51786	0.51786169	67	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		15.391	15.391	2	0.019986	6337	DP1061-9	84.615	30.84			NaN	NaN	NaN	0	0	Median	12179000	0	12179000	675	67	643	1264	2600;2601	2600		2	9606
ELSPLFLR	0	1	Unmodified	973.55967	0.55966693	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					19.73	19.73	2	0.02772	10074	DP1061-6	81.297	39.644			NaN	NaN	NaN	0	0	Median	3738500	0	3738500	676	68	644	1265	2602;2603	2602		2	9606
ELTAVVQK	1	0	Unmodified	886.51238	0.51238239	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	5	0					1	13.664	13.664	2	0.064064	4294	DP1061-10	67.032	30.637			5.4089	5.3665	NaN	1	0	Median	28208000	4766100	23442000	677	140	645	1266	2604	2604		1	9606
ELTDEEAER	0	1	Unmodified	1090.4778	0.47784737	541	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		12.824	12.824	2	0.038537	3235	DP1061-9	75.043	29.962			NaN	NaN	NaN	0	0	Median	4850500	0	4850500	678	541	646	1267	2605	2605		1	9606
ELTMASLPFTFDVER	0	1	Oxidation (M)	1770.8498	0.84983687	487	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	1	0	2	0		1				21.822	21.822	2	4.926E-05	14066	DP1061-7	148.78	112.11			NaN	NaN	NaN	0	0	Median	8206800	0	8206800	679	487	647	1268	2606;2607	2607	584	2	9606
ELTTEIDNNIEQISSYK	1	0	Unmodified	1995.9637	0.96368066	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.25	1.48	1		1	1	1	20.288	20.288	2	6.1016E-11	10692	DP1061-6	191.48	115.32		+	NaN	NaN	NaN	0	0	Median	33217000	33217000	0	680	17	648	1269;1270;1271;1272	2608;2609;2610;2611;2612;2613;2614;2615	2610		8	9606
ELYLSHNGIEVIEGLENNNK	1	0	Unmodified	2284.1335	0.13353995	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		20.255	20.255	2	8.881699999999999E-46	12534	DP1061-9	246.75	213.13			NaN	NaN	NaN	0	0	Median	7175200	0	7175200	681	360	649	1273	2616;2617	2616		2	9606
EMEFPSSLTSTER	0	1	Oxidation (M)	1528.6715	0.67153816	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	1	0	1.5	0.5	1	1				16.776	16.776	2	0.0042115	6706	DP1061-6	90.685	65.026			NaN	NaN	NaN	0	0	Median	5418900	0	5418900	682	497	650	1274;1275	2618;2619	2618	594	2	9606
EMEIMADSKMK	2	0	2 Oxidation (M)	1343.5771	0.57710919	561	Q9Y5K1	SPO11	Meiotic recombination protein SPO11	yes	yes	0	2	1	3	0			1			21.216	21.216	2	0.0051269	12847	DP1061-8	89.886	61.159			NaN	NaN	NaN	0	0	Median	10697000	10697000	0	683	561	651	1276	2620;2621	2621	657;658	2	9606
EMFLEDILR	0	1	Oxidation (M)	1180.5798	0.57981002	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	1	0	2	0		1				21.151	21.151	2	0.017722	13363	DP1061-7	82.279	44.467			NaN	NaN	NaN	0	0	Median	2408600	0	2408600	684	497	652	1277	2622	2622	595	1	9606
EMGFTNMTEIQHK	1	0	2 Oxidation (M)	1596.6912	0.69122774	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	2	0	3	0			1			13.445	13.445	3	0.024738	3987	DP1061-8	58.098	41.352			NaN	NaN	NaN	0	0	Median	21587000	0	21587000	685	515	653	1278	2623;2624	2623	627;628	2	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	0	1	2 Oxidation (M)	2851.2753	0.27527152	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	0	2.62	0.992	1	3	2	2		16.12	16.12	2;3;4	1.4544E-35	6979	DP1061-7	154.87	154.87			58.789	59.816	NaN	1	0	Median	721520000	12305000	709210000	686	339	654	1279;1280;1281;1282;1283;1284;1285;1286	2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638;2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649;2650;2651	2632	443;444	27	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	0	1	Oxidation (M)	2835.2804	0.2803569	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.67	0.745		3	2	1		17.222	17.222	2;3;4	1.6311E-14	8227	DP1061-7	147.7	122.38			NaN	NaN	NaN	0	0	Median	104900000	0	104900000	687	339	654	1287;1288;1289;1290;1291;1292	2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669;2670	2654	443;444	19	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	0	1	Unmodified	2819.2854	0.28544228	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.33	0.943		1		2		17.772	17.772	3	6.447899999999999E-21	9308	DP1061-7	156.2	138.4			NaN	NaN	NaN	0	0	Median	58349000	0	58349000	688	339	654	1293;1294;1295	2671;2672;2673;2674;2675;2676;2677	2672		7	9606
EMQSVVQLIMTR	0	1	2 Oxidation (M)	1465.7269	0.72688497	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	2	0	4	0				1		18.454	18.454	2	0.016255	10164	DP1061-9	73.9	33.964			NaN	NaN	NaN	0	0	Median	6818600	0	6818600	689	491	655	1296	2678	2678	589;590	1	9606
ENAGEDPGLAR	0	1	Unmodified	1127.5207	0.52071524	272	P81605	DCD	Dermcidin;Survival-promoting peptide;DCD-1	yes	yes	0	0	0	5	0					1	13.081	13.081	2	0.0040589	3702	DP1061-10	103.55	63.545			NaN	NaN	NaN	0	0	Median	4330900	4330900	0	690	272	656	1297	2679;2680	2680		2	9606
ENDPSVMR	0	1	Unmodified	946.41783	0.41783007	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				12.713	12.713	2	0.00083862	2969	DP1061-7	116.25	89.648			0.78839	0.85888	3.1742	2	0	Median	143570000	79130000	64436000	691	309	657	1298;1299	2681;2682;2683	2682		3	9606
ENEDENSSSTNLCVEDLQK	1	0	Unmodified	2209.9281	0.92809979	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				16.746	16.746	2	3.2813E-85	8013	DP1061-7	288.29	244.39			NaN	NaN	NaN	0	0	Median	17505000	0	17505000	692	512	658	1300	2684;2685	2685		2	9606
ENEFSFEDNAIR	0	1	Unmodified	1469.6423	0.64228694	343;426	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	no	no	0	0	0	1	0	1					18.68	18.68	2	0.0016016	8932	DP1061-6	145.9	69.676			NaN	NaN	NaN	0	0	Median	6977900	0	6977900	693	343;426	659	1301	2686;2687	2686		2	9606
ENGMDVFR	0	1	Oxidation (M)	982.41783	0.41783007	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				14.323	14.323	2	0.028676	4803	DP1061-7	75.213	39.027			0.93134	0.97882	NaN	1	0	Median	177250000	88824000	88429000	694	116	660	1302	2688;2689;2690	2688	152	3	9606
ENGMDVFR	0	1	Unmodified	966.42292	0.42291545	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				16.741	16.741	2	0.0025006	7942	DP1061-7	104.44	61.523			0.86596	0.93925	NaN	1	0	Median	60045000	33287000	26758000	695	116	660	1303	2691;2692	2691		2	9606
ENMAYTVECLR	0	1	Oxidation (M)	1400.6064	0.60643548	138	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	4	0				1		16.303	16.303	2	0.00036668	7399	DP1061-9	137.95	76.174			NaN	NaN	NaN	0	0	Median	4945000	0	4945000	696	138	661	1304	2693;2694	2693	184	2	9606
ENNVDAVHPGYGFLSER	0	1	Unmodified	1902.886	0.88603946	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.33	0.943		2		4		17.638	17.638	2;3	1.0086E-66	9108	DP1061-7	225.21	225.21			0.84916	0.86641	5.5312	3	0	Plateau	837960000	445530000	392430000	697	116	662	1305;1306;1307;1308;1309;1310	2695;2696;2697;2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710	2703		16	9606
ENTDSVVMQPK	1	0	Oxidation (M)	1262.5813	0.58126659	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				12.855	12.855	2	0.0052432	3084	DP1061-7	91.867	62.909			NaN	NaN	NaN	0	0	Median	6024300	0	6024300	698	289	663	1311	2711;2712	2712	360	2	9606
ENVLQYCR	0	1	Unmodified	1080.5022	0.50222841	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				15.534	15.534	2	0.0099118	6353	DP1061-7	108.09	73.915			NaN	NaN	NaN	0	0	Median	11323000	0	11323000	699	182	664	1312	2713	2713		1	9606
EPFFHGHDNYDQLVR	0	1	Unmodified	1872.8543	0.8543454	266	P68400	CSNK2A1	Casein kinase II subunit alpha	yes	yes	0	0	0	4	0				1		17.076	17.076	3	0.00048104	8382	DP1061-9	101.45	71.345			NaN	NaN	NaN	0	0	Median	8131900	0	8131900	700	266	665	1313	2714;2715	2714		2	9606
EPLLVTNGADNALR	0	1	Unmodified	1481.7838	0.78380622	422	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					17.777	17.777	2	1.4846E-05	8016	DP1061-6	149.96	111.21			NaN	NaN	NaN	0	0	Median	5531000	0	5531000	701	422	666	1314	2716;2717	2717		2	9606
EPLYVGVDDDKANATVDGLEQGYVVCPSEK	2	0	Unmodified	3266.5289	0.52890325	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	3	0			1			19.783	19.783	3	1.377E-05	11079	DP1061-8	100.17	82.45			NaN	NaN	NaN	0	0	Median	12405000	0	12405000	702	515	667	1315	2718;2719;2720	2719		3	9606
EPNPPIDEVISTPGVVAR	0	1	Unmodified	1888.9894	0.9894419	211	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	3	0			1			19.352	19.352	2	0.00068659	10483	DP1061-8	110.38	75.419			NaN	NaN	NaN	0	0	Median	0	0	0	703	211	668	1316	2721	2721		1	9606
EPPEQELQR	0	1	Unmodified	1124.5462	0.54620171	423	Q8TA86	RP9	Retinitis pigmentosa 9 protein	yes	yes	0	0	0	5	0					2	13.746	13.746	2	0.0008414	4198	DP1061-10	126.28	75.219			NaN	NaN	NaN	0	0	Median	7396800	0	7396800	704	423	669	1317;1318	2722;2723;2724;2725	2724		4	9606
EPPGLIFNK	1	0	Unmodified	1013.5546	0.55458155	67	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		17.424	17.424	2	0.00036398	8881	DP1061-9	143.11	94.01			NaN	NaN	NaN	0	0	Median	6992100	0	6992100	705	67	670	1319	2726;2727	2727		2	9606
EPPGLIFNKVEVSEDEPASK	2	0	Unmodified	2184.095	0.095029182	67	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	1	4	0				2		18.026	18.026	2;3	5.4462E-13	9651	DP1061-9	165.49	107.22			NaN	NaN	NaN	0	0	Median	16547000	0	16547000	706	67	671	1320;1321	2728;2729;2730	2730		3	9606
EPQVYVLAPPQEELSK	1	0	Unmodified	1825.9462	0.9461801	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	2.5	1.12	1	1	1	1		19.184	19.184	2	8.2045E-08	10163	DP1061-8	165.51	134.28		+	NaN	NaN	NaN	0	0	Median	268270000	268270000	0	707	5	672	1322;1323;1324;1325	2731;2732;2733;2734;2735;2736;2737;2738;2739	2737		9	
EQDQRPLHPVANPHAEISTK	1	1	Unmodified	2266.1454	0.14544204	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	1	4	0				1		13.147	13.147	4	0.0060918	3522	DP1061-9	78.674	60.051			NaN	NaN	NaN	0	0	Median	7833600	0	7833600	708	519	673	1326	2740;2741	2740		2	9606
EQEAEPEEQEEDSSSDPR	0	1	Unmodified	2089.8196	0.8195952	220	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	4.33	0.943			1		2	13.298	13.298	2	6.431E-51	3731	DP1061-8	257.02	199.86			NaN	NaN	NaN	0	0	Median	6118600	0	6118600	709	220	674	1327;1328;1329	2742;2743;2744;2745;2746;2747	2746		6	9606
EQEVPTFTELSR	0	1	Unmodified	1434.6991	0.69907354	59	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	4	0				1		18.415	18.415	2	0.01639	10165	DP1061-9	88.056	31.697			NaN	NaN	NaN	0	0	Median	0	0	0	710	59	675	1330	2748	2748		1	9606
EQGTGNSYTDTSGPK	1	0	Unmodified	1540.6641	0.66414459	529	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	3.5	1.5		1			1	12.699	12.699	2	0.0014892	2885	DP1061-7	111.12	71.065			NaN	NaN	NaN	0	0	Median	0	0	0	711	529	676	1331;1332	2749;2750	2750		2	9606
EQIDTLFK	1	0	Unmodified	992.51786	0.51786169	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				17.912	17.912	2	0.0099118	9546	DP1061-7	108.09	11.897			NaN	NaN	NaN	0	0	Median	35856000	0	35856000	712	289	677	1333	2751	2751		1	9606
EQLHLVMQGDVIR	0	1	Oxidation (M)	1552.8032	0.80316145	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		2				16.282	16.282	2;3	0.009234	7369	DP1061-7	84.188	41.85			NaN	NaN	NaN	0	0	Median	33056000	0	33056000	713	466	678	1334;1335	2752;2753;2754	2754	561	3	9606
EQLLQSNPVLEAFGNAK	1	0	Unmodified	1856.9632	0.96322715	52	Q9UBC5;O43795	MYO1A;MYO1B	Unconventional myosin-Ia;Unconventional myosin-Ib	yes	no	0	0	0	2	0		1				21.501	21.501	2	4.2015E-06	13732	DP1061-7	128.31	66.01			NaN	NaN	NaN	0	0	Median	0	0	0	714	52	679	1336	2755	2755		1	9606
EQLMTVLQAGK	1	0	Oxidation (M)	1232.6435	0.64347291	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				16.026	16.026	2	0.0044151	7002	DP1061-7	94.692	59.423			NaN	NaN	NaN	0	0	Median	22764000	0	22764000	715	466	680	1337	2756;2757	2757	562	2	9606
EQLMTVLQAGK	1	0	Unmodified	1216.6486	0.64855829	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				17.911	17.911	2	0.055161	9556	DP1061-7	68.846	27.563			NaN	NaN	NaN	0	0	Median	8132800	0	8132800	716	466	680	1338	2758	2758		1	9606
EQSQLTATQTR	0	1	Unmodified	1261.6262	0.62624295	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					12.56	12.56	2	0.0027335	2157	DP1061-6	160.53	72.892			NaN	NaN	NaN	0	0	Median	11484000	0	11484000	717	387	681	1339	2759;2760	2759		2	9606
EQSQPCADNAVLSSGLTAAR	0	1	Unmodified	2073.9749	0.97493082	135	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	4	0				1		17.543	17.543	2	7.6964E-05	9027	DP1061-9	115.09	79.092			NaN	NaN	NaN	0	0	Median	0	0	0	718	135	682	1340	2761	2761		1	9606
EQVNDLFSR	0	1	Unmodified	1106.5356	0.53563702	269	P78347;Q86UP8;Q6EKJ0	GTF2I;GTF2IRD2;GTF2IRD2B	General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B	yes	no	0	0	0	2	0		1				17.252	17.252	2	0.0011504	8706	DP1061-7	112.41	112.41			1.3623	1.5109	NaN	1	0	Median	27935000	10837000	17098000	719	269	683	1341	2762;2763;2764;2765	2764		4	9606
ERLEDLNFPEIK	1	1	Unmodified	1501.7777	0.77765821	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	1	3	0			1			18.74	18.74	3	0.019239	9695	DP1061-8	67.997	35.929			NaN	NaN	NaN	0	0	Median	8408700	0	8408700	720	555	684	1342	2766	2766		1	9606
ERLEQQVPVNQVFGQDEMIDVIGVTK	1	1	Oxidation (M)	2986.507	0.50698602	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	1	4	0				1		20.098	20.098	3	9.1982E-06	12274	DP1061-9	111.64	93.241			NaN	NaN	NaN	0	0	Median	61659000	0	61659000	721	169	685	1343	2767;2768;2769	2768	214	3	9606
ERLEQQVPVNQVFGQDEMIDVIGVTK	1	1	Unmodified	2970.5121	0.5120714	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				1		21.185	21.185	3	0.00041112	13740	DP1061-9	82.086	58.169			NaN	NaN	NaN	0	0	Median	7435900	0	7435900	722	169	685	1344	2770;2771	2771		2	9606
ESADGLQGETQLLVSR	0	1	Unmodified	1701.8533	0.85334235	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.916	18.916	2	0.0032811	10456	DP1061-7	101.72	62.915			NaN	NaN	NaN	0	0	Median	0	0	0	723	182	686	1345	2772	2772		1	9606
ESEDSTDFNDK	1	0	Unmodified	1285.4946	0.49461965	550	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	5	0					1	12.957	12.957	2	0.0039762	3516	DP1061-10	104.05	85.268			NaN	NaN	NaN	0	0	Median	1504600	0	1504600	724	550	687	1346	2773;2774	2774		2	9606
ESFDGSVR	0	1	Unmodified	895.40356	0.40356022	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				13.639	13.639	2	0.007882	3968	DP1061-7	111.82	34.075			NaN	NaN	NaN	0	0	Median	41353000	0	41353000	725	134	688	1347	2775;2776	2776		2	9606
ESGPSGIETELR	0	1	Unmodified	1273.615	0.61500956	422	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					16.128	16.128	2	0.0092501	5974	DP1061-6	88.134	50.575			NaN	NaN	NaN	0	0	Median	10592000	0	10592000	726	422	689	1348	2777	2777		1	9606
ESLCQAALGLILK	1	0	Unmodified	1414.7854	0.78538612	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		23.151	23.151	2	5.3151E-07	15196	DP1061-8	128.6	97.534			0.8131	0.85918	11.308	2	0	Median	92640000	47029000	45611000	727	455	690	1349;1350	2778;2779;2780;2781;2782	2780		5	9606
ESRYEEEEEQSR	0	2	Unmodified	1569.6543	0.65430819	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	0	1					12.522	12.522	3	5.9269E-06	2148	DP1061-6	180.09	129.08			NaN	NaN	NaN	0	0	Median	18479000	0	18479000	728	559	691	1351	2783	2783		1	9606
ESTGAQVQVAGDMLPNSTER	0	1	Oxidation (M)	2104.9695	0.96951109	353;354	Q15365;Q15366;P57721	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	no	no	0	1	0	4	0				1		16.005	16.005	2	4.7983E-14	6956	DP1061-9	178.22	138.65			NaN	NaN	NaN	0	0	Median	15910000	0	15910000	729	353;354	692	1352	2784;2785;2786	2784	463	3	9606
ESTGAQVQVAGDMLPNSTER	0	1	Unmodified	2088.9746	0.97459647	353;354	Q15365;Q15366;P57721	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	no	no	0	0	0	4	0				1		17.54	17.54	2	0.0052217	9022	DP1061-9	89.26	47.877			NaN	NaN	NaN	0	0	Median	0	0	0	730	353;354	692	1353	2787	2787		1	9606
ESTLHLVLR	0	1	Unmodified	1066.6135	0.61349341	260	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	1		1		1		16.263	16.263	2	3.6143E-11	7348	DP1061-7	157.33	116.98			13.959	15.423	NaN	1	0	Median	43544000	1958500	41586000	731	260	693	1354;1355	2788;2789;2790	2788		3	9606
ESYDDVSSFR	0	1	Unmodified	1203.5044	0.50439647	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		16.531	16.531	2	0.0075743	7610	DP1061-9	96.034	96.034			NaN	NaN	NaN	0	0	Median	22508000	0	22508000	732	462	694	1356	2791;2792	2791		2	9606
ETAENYLGHTAK	1	0	Unmodified	1332.631	0.63099397	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			2			13.643	13.643	2;3	0.015486	4276	DP1061-8	82.494	38.844			1.7054	1.8216	NaN	1	0	Median	24943000	7007200	17935000	733	166	695	1357;1358	2793;2794	2794		2	9606
ETDFYLQSVER	0	1	Unmodified	1385.6463	0.64630969	537	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		18.386	18.386	2	0.022146	10050	DP1061-9	78.655	39.351			NaN	NaN	NaN	0	0	Median	8246300	0	8246300	734	537	696	1359	2795;2796	2795		2	9606
ETEGDVTSVK	1	0	Unmodified	1063.5033	0.50333384	205	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			12.531	12.531	2	0.0079836	2916	DP1061-8	94.309	51.186			NaN	NaN	NaN	0	0	Median	11112000	0	11112000	735	205	697	1360	2797	2797		1	9606
ETENDDLTNVIQK	1	0	Unmodified	1517.7209	0.72093119	75	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				16.595	16.595	2	0.00044267	7751	DP1061-7	117.14	80.071			NaN	NaN	NaN	0	0	Median	9198900	0	9198900	736	75	698	1361	2798;2799	2799		2	9606
ETGGFSQEELLK	1	0	Unmodified	1336.6511	0.65106071	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.75	1.09	1		2	1		21.723	21.723	2	0.00057613	8809	DP1061-9	139.43	95.782			NaN	NaN	NaN	0	0	Median	104810000	0	104810000	737	339	699	1362;1363;1364;1365	2800;2801;2802;2803;2804	2803		5	9606
ETQAQYQALER	0	1	Unmodified	1335.6419	0.64189301	456	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	0	2	0		1				14.665	14.665	2	0.0023432	5418	DP1061-7	112.36	61.884			NaN	NaN	NaN	0	0	Median	11041000	0	11041000	738	456	700	1366	2805	2805		1	9606
ETSMVHELNR	0	1	Oxidation (M)	1230.5663	0.56628523	230	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	1	0	1	0	1					12.423	12.423	3	0.000303	1958	DP1061-6	109.66	81.582			4.4362	5.1347	NaN	1	0	Median	11643000	1940200	9703300	739	230	701	1367	2806;2807	2806	293	2	9606
ETVEEQASTTER	0	1	Unmodified	1378.6212	0.62121715	323	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	2	0		1				12.978	12.978	2	0.00012626	3274	DP1061-7	130.41	56.748			NaN	NaN	NaN	0	0	Median	2526300	0	2526300	740	323	702	1368	2808;2809	2809		2	9606
ETVSEESNVLCLSK	1	0	Unmodified	1593.7556	0.75560214	121	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				17.363	17.363	2	0.0019551	8853	DP1061-7	110.66	61.664			NaN	NaN	NaN	0	0	Median	0	0	0	741	121	703	1369	2810	2810		1	9606
ETYVEQEQGENANDRNDR	0	2	Unmodified	2165.921	0.920981	544	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	1	2	0		1				12.998	12.998	3	0.055365	3284	DP1061-7	56.46	29.635			NaN	NaN	NaN	0	0	Median	0	0	0	742	544	704	1370	2811	2811		1	9606
EVADSYAQNAK	1	0	Unmodified	1194.5517	0.55168102	493	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	5	0					1	12.793	12.793	2	9.6817E-05	3333	DP1061-10	160.63	118.98			NaN	NaN	NaN	0	0	Median	20494000	0	20494000	743	493	705	1371	2812;2813	2813		2	9606
EVATNSELVQSGK	1	0	Unmodified	1360.6834	0.68342347	7	CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;Q04695	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	yes	no	0	0	0	3	1.58	1	1		1	1	13.86	13.86	2	1.5598E-05	3525	DP1061-6	179.57	108.2		+	NaN	NaN	NaN	0	0	Median	21265000	21265000	0	744	7	706	1372;1373;1374;1375	2814;2815;2816;2817;2818;2819;2820	2815		7	9606
EVCEQNQQLLR	0	1	Unmodified	1415.6827	0.68271197	74	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	2	0		2				14.934	14.934	2	0.022797	5746	DP1061-7	90.709	54.262			NaN	NaN	NaN	0	0	Median	0	0	0	745	74	707	1376;1377	2821;2822	2822		2	9606
EVDEQMLNVQNK	1	0	Oxidation (M)	1461.677	0.67695789	265;98;328	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.75	0.829			2	1	1	14.316	14.316	2	2.9143E-11	4789	DP1061-9	152.06	124.42			4.2138	4.4048	NaN	1	0	Median	231550000	24648000	206910000	746	98;265;328	708	1378;1379;1380;1381	2823;2824;2825;2826;2827;2828;2829;2830;2831	2828	119	9	9606
EVDEQMLNVQNK	1	0	Unmodified	1445.682	0.68204326	265;98;328	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.25	0.433			3	1		16.303	16.303	2	2.0968E-17	7032	DP1061-9	169.09	121.53			4.1257	4.3126	NaN	1	0	Median	61019000	7752500	53267000	747	98;265;328	708	1382;1383;1384;1385	2832;2833;2834;2835;2836;2837;2838;2839;2840;2841	2838		10	9606
EVEEISLLQPQVEESVLNLGK	1	0	Unmodified	2352.2424	0.2424217	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			2			23.177	23.177	2;3	1.8043E-85	15298	DP1061-8	283.21	253.19			NaN	NaN	NaN	0	0	Median	15039000	0	15039000	748	31	709	1386;1387	2842;2843;2844;2845;2846;2847	2846		6	9606
EVFEDAAEIR	0	1	Unmodified	1177.5615	0.56151742	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0.707		1	2	1		17.171	17.171	2	0.00011466	8314	DP1061-7	125.82	93.462			23.938	25.32	NaN	1	0	Median	193120000	6573300	186540000	749	134	710	1388;1389;1390;1391	2848;2849;2850;2851;2852;2853	2849		6	9606
EVFFMNTQSIVQLVQR	0	1	Oxidation (M)	1953.9982	0.99823245	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.17	1.07	2	2	1	1		22.039	22.039	2;3	1.6423E-92	14001	DP1061-7	246.08	246.08			0.91058	1.0044	3.7943	4	0	Median	155570000	79769000	75798000	750	309	711	1392;1393;1394;1395;1396;1397	2854;2855;2856;2857;2858;2859;2860;2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874	2865	385	21	9606
EVFFMNTQSIVQLVQR	0	1	Unmodified	1938.0033	0.003317824	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	4					24.151	24.151	2	1.202E-11	14554	DP1061-6	179.19	137.81			NaN	NaN	NaN	0	0	Median	1906200	1906200	0	751	309	711	1398;1399;1400;1401	2875;2876;2877;2878;2879;2880	2880		6	9606
EVIINSR	0	1	Unmodified	829.46577	0.46576654	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		13.508	13.508	2	6.7144E-07	3464	DP1061-8	138.85	28.215			0.96497	1.0097	14.025	4	0	Median	887680000	440290000	447390000	752	86	712	1402;1403;1404;1405	2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892	2885		12	9606
EVLCPESQSPNGVR	0	1	Unmodified	1570.741	0.74095513	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.958	14.958	2	6.0645E-62	5525	DP1061-7	225.22	174.77			76.673	78.882	NaN	1	0	Median	466910000	11769000	455140000	753	339	713	1406;1407;1408;1409;1410	2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906	2899		14	9606
EVLDQVCYR	0	1	Unmodified	1180.5547	0.55465791	361	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				16.223	16.223	2	0.02929	7315	DP1061-7	71.501	48.761			1.7637	1.9974	NaN	1	0	Median	13610000	5916900	7693000	754	361	714	1411	2907	2907		1	9606
EVPAVPETLKK	2	0	Unmodified	1209.6969	0.69688869	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	5	0					2	21.411	21.411	3	0.011125	10290	DP1061-10	68.355	44.505			NaN	NaN	NaN	0	0	Median	6886100	0	6886100	755	132	715	1412;1413	2908;2909	2908		2	9606
EVPTQFLDRDEEEEDADFLK	1	1	Unmodified	2424.0969	0.096879676	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	1	2	0		1				19.812	19.812	3	0.015818	11608	DP1061-7	70.235	45.641			NaN	NaN	NaN	0	0	Median	0	0	0	756	313	716	1414	2910	2910		1	9606
EVQSPEGMISLR	0	1	Oxidation (M)	1360.6657	0.66566492	496	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	1	0	2	0		1				16.199	16.199	2	0.01397	7247	DP1061-7	80.706	26.931			NaN	NaN	NaN	0	0	Median	11780000	0	11780000	757	496	717	1415	2911	2911	592	1	9606
EVQTNDLKEVVNK	2	0	Unmodified	1514.794	0.79403655	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4.33	0.471				2	1	14.604	14.604	2;3	1.2372E-05	5258	DP1061-9	132.56	99.337			NaN	NaN	NaN	0	0	Median	59557000	0	59557000	758	226	718	1416;1417;1418	2912;2913;2914;2915;2916	2914		5	9606
EVSFQSTGESEWK	1	0	Unmodified	1512.6733	0.67325272	295	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	5	0					2	17.325	17.325	2	0.0094163	9284	DP1061-10	90.149	47.811			NaN	NaN	NaN	0	0	Median	1901200	0	1901200	759	295	719	1419;1420	2917;2918;2919	2919		3	9606
EVVEQGLLK	1	0	Unmodified	1013.5757	0.57571092	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				15.94	15.94	2	0.011266	6879	DP1061-7	96.492	35.732			NaN	NaN	NaN	0	0	Median	27281000	0	27281000	760	466	720	1421	2920;2921	2920		2	9606
EVVVYAPLSK	1	0	Unmodified	1103.6227	0.62266112	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				17.118	17.118	2	0.0062862	8442	DP1061-7	101.46	55.488			NaN	NaN	NaN	0	0	Median	51662000	0	51662000	761	512	721	1422	2922;2923	2923		2	9606
EVYQQQQYGSGGR	0	1	Unmodified	1498.6801	0.68006943	459	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	4	0				2		13.63	13.63	2	0.0008527	4098	DP1061-9	123.51	79.556			NaN	NaN	NaN	0	0	Median	0	0	0	762	459	722	1423;1424	2924;2925	2924		2	9606
EWNNGLVIK	1	0	Unmodified	1071.5713	0.57129425	575				yes	yes	0	0	0	4	0				1		17.325	17.325	2	0.0026721	8686	DP1061-9	102.71	21.079	+		6.84	7.15	NaN	1	0	Median	19189000	2544200	16645000	763	575	723	1425	2926;2927	2926		2	9606
EYEAEGIAK	1	0	Unmodified	1008.4764	0.47639081	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	13.927	13.927	2	6.1116E-10	4257	DP1061-8	152.47	99.834			0.91645	0.92358	7.6217	4	0	Linear	776500000	397250000	379250000	764	501	724	1426;1427;1428;1429	2928;2929;2930;2931;2932;2933;2934;2935;2936;2937;2938;2939;2940	2931		13	9606
EYEAEGIAKDGAK	2	0	Unmodified	1379.6569	0.65687437	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			12.922	12.922	2;3	1.7676E-17	3412	DP1061-8	164.65	164.65			0.80753	0.92175	11.091	2	0	Median	29833000	16208000	13625000	765	501	725	1430;1431	2941;2942;2943	2943		3	9606
EYNEDEDPAAR	0	1	Unmodified	1307.5266	0.52658848	311	Q13123	IK	Protein Red	yes	yes	0	0	0	5	0					1	13.384	13.384	2	0.034177	4009	DP1061-10	84.615	65.943			NaN	NaN	NaN	0	0	Median	0	0	0	766	311	726	1432	2944	2944		1	9606
EYQELMNTK	1	0	Oxidation (M)	1170.5227	0.52268908	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	1	0	1	0	1					13.219	13.219	2	0.025812	2958	DP1061-6	76.478	45.865		+	NaN	NaN	NaN	0	0	Median	5006900	5006900	0	767	18	727	1433	2945	2945	8	1	9606
FAAATGATPIAGR	0	1	Unmodified	1202.6408	0.6407708	1	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		15.168	15.168	2	0.0058024	6015	DP1061-9	104.05	71.155			NaN	NaN	NaN	0	0	Median	0	0	0	768	1	728	1434	2946	2946		1	9606
FAAHLIAGAPSEGSGALKPELSR	1	1	Unmodified	2278.207	0.20697967	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	1	2	0		1				16.953	16.953	4	0.00050982	8190	DP1061-7	104.06	88.711			NaN	NaN	NaN	0	0	Median	70642000	0	70642000	769	428	729	1435	2947;2948	2948		2	9606
FACHSASLTVR	0	1	Unmodified	1247.6081	0.60809046	352	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	3	0			1			13.792	13.792	3	0.0011307	4402	DP1061-8	110.84	66.198			NaN	NaN	NaN	0	0	Median	24942000	0	24942000	770	352	730	1436	2949;2950	2949		2	9606
FAEAFEAIPR	0	1	Unmodified	1149.5819	0.58185893	205	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			18.685	18.685	2	0.0070997	9559	DP1061-8	98.033	50.835			NaN	NaN	NaN	0	0	Median	6512500	0	6512500	771	205	731	1437	2951;2952;2953	2952		3	9606
FAEALGSTEAK	1	0	Unmodified	1122.5557	0.55570376	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				14.639	14.639	2	1.5096E-06	5349	DP1061-7	133.23	108.09			1.2856	1.3469	NaN	1	0	Median	21875000	9548300	12326000	772	269	732	1438	2954;2955;2956;2957	2957		4	9606
FALEQQR	0	1	Unmodified	890.46102	0.46101552	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	3	1		1		1		14.608	14.608	2	0.035098	5341	DP1061-9	81.381	36.689			NaN	NaN	NaN	0	0	Median	34475000	0	34475000	773	268	733	1439;1440	2958;2959;2960	2960		3	9606
FANPFPAAVR	0	1	Unmodified	1088.5767	0.57671398	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		26.35	26.35	2	0.00010316	10334	DP1061-9	101.6	80.902			0.76169	0.81942	9.4951	2	0	Median	48170000	34162000	14007000	774	87	734	1441;1442;1443;1444	2961;2962;2963;2964;2965;2966;2967;2968;2969	2969		8	9606
FAPEMDDYVGTFLEGCQDDPER	0	1	Oxidation (M)	2606.0577	0.057733753	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2.5	0.5		1	1			21.37	21.37	2	7.741E-12	13495	DP1061-7	138.73	121.22			NaN	NaN	NaN	0	0	Median	15605000	0	15605000	775	466	735	1445;1446	2970;2971;2972;2973;2974	2971	563	5	9606
FAQALGLTEAVK	1	0	Unmodified	1246.6921	0.69213767	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.849	17.849	2	0.00049394	9469	DP1061-7	112.13	75.748			1.414	1.4815	NaN	1	0	Median	28102000	11592000	16510000	776	269	736	1447	2975;2976	2976		2	9606
FAQHGTFEYEYSQR	0	1	Unmodified	1761.7747	0.7746981	139	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		3				15.939	15.939	2;3	2.1617E-05	6911	DP1061-7	122.18	67.919			NaN	NaN	NaN	0	0	Median	26951000	0	26951000	777	139	737	1448;1449;1450	2977;2978;2979	2978		3	9606
FASFIDK	1	0	Unmodified	826.4225	0.42250475	20;18;14	CON__P35908v2;P35908;CON__P35908;Q01546;CON__Q6NXH9;Q5XKE5;CON__Q01546;CON__Q5XKE5;CON__P07744;CON__Q9R0H5;CON__Q32MB2;CON__Q7Z794;CON__P19013;Q7Z794;CON__P12035;Q86Y46;Q7RTS7;CON__Q7RTS7;P19013;P12035;CON__Q9NSB2;CON__Q6ISB0;CON__Q9DCV7;CON__Q9H552;CON__Q3KNV1;CON__P08729;Q9NSB2;CON__Q3SY84;P08729;Q3SY84;CON__P13647;P13647;CON__O95678;O95678;CON__Q8VED5;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;P05787;CON__P05787	KRT2;KRT76;KRT79;KRT77;KRT73;KRT74;KRT4;KRT3;KRT84;KRT7;KRT71;KRT5;KRT75;KRT72;KRT8	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 3;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 8	no	no	0	0	0	2.33	1.25	1	1		1		16.641	16.641	2	0.0019504	6479	DP1061-6	120.65	55.382		+	NaN	NaN	NaN	0	0	Median	68199000	68199000	0	778	20;18;14	738	1451;1452;1453	2980;2981;2982;2983;2984	2981		5	9606
FCANTCVECR	0	1	Unmodified	1315.5108	0.51076096	324	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		14.21	14.21	2	0.0011829	4835	DP1061-9	119.21	84.408			NaN	NaN	NaN	0	0	Median	3636300	0	3636300	779	324	739	1454	2985;2986	2985		2	9606
FCIWTESAFR	0	1	Unmodified	1315.6019	0.60194245	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		20.899	20.899	2	7.9193E-25	13293	DP1061-9	186.3	130.77			23.726	25.367	NaN	1	0	Median	99339000	5101000	94238000	780	162	740	1455	2987;2988;2989;2990;2991	2987		5	9606
FDDGAGGDNEVQR	0	1	Unmodified	1378.5749	0.57493566	160	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	4	0				1		13.819	13.819	2	0.00090098	4237	DP1061-9	111.5	74.337			NaN	NaN	NaN	0	0	Median	4480700	0	4480700	781	160	741	1456	2992;2993	2992		2	9606
FDEISFVNFAR	0	1	Unmodified	1343.651	0.65100113	297	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	3.5	0.5			1	1		21.547	21.547	2	0.0009274	13226	DP1061-8	140.14	70.328			NaN	NaN	NaN	0	0	Median	29722000	0	29722000	782	297	742	1457;1458	2994;2995;2996;2997	2995		4	9606
FDGALNVDLTEFQTNLVPYPR	0	1	Unmodified	2408.2012	0.20122559	264;394;465	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	4	0				1		24.022	24.022	2	3.2231E-59	16954	DP1061-9	211.51	168.71			1.1755	1.2568	NaN	1	0	Median	5662000	2641900	3020100	783	264;394;465	743	1459	2998;2999;3000;3001	2998		4	9606
FDLMYAK	1	0	Oxidation (M)	902.42079	0.42079019	264;394;465	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	1	0	4	0				1		16.665	16.665	2	0.0010259	7851	DP1061-9	101.21	58.297			3.2412	3.3881	NaN	1	0	Median	23908000	4382200	19525000	784	264;394;465	744	1460	3002;3003;3004;3005	3005	325	4	9606
FDQLFDDESDPFEVLK	1	0	Unmodified	1942.8836	0.88363942	418	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	3.5	0.5			1	1		23.321	23.321	2	1.5862E-05	15507	DP1061-8	119.88	73.001			NaN	NaN	NaN	0	0	Median	7019500	0	7019500	785	418	745	1461;1462	3006;3007;3008;3009	3007		4	9606
FDTGNLCMVTGGANLGR	0	1	Oxidation (M)	1797.8138	0.81380249	243	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	5	0					2	20.356	20.356	2	0.0014863	8999	DP1061-10	100.55	69.68			NaN	NaN	NaN	0	0	Median	9486900	0	9486900	786	243	746	1463;1464	3010;3011	3011	301	2	9606
FDTPFLPK	1	0	Unmodified	963.50657	0.50656873	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		19.135	19.135	2	0.024966	10757	DP1061-7	84.916	24.156			NaN	NaN	NaN	0	0	Median	12374000	0	12374000	787	339	747	1465;1466;1467	3012;3013;3014	3012		3	9606
FEAHPNDLYVEGLPENIPFR	0	1	Unmodified	2356.1488	0.14879609	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.66	20.66	3	1.5245E-06	12603	DP1061-7	87.352	66.787			1.1992	1.3392	NaN	1	0	Median	22027000	10355000	11672000	788	269	748	1468	3015;3016	3015		2	9606
FEDCTSENTLIK	1	0	Unmodified	1455.6552	0.65515981	438	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	2	0		1				16.239	16.239	2	0.0024538	7272	DP1061-7	105.98	72.785			NaN	NaN	NaN	0	0	Median	6373300	0	6373300	789	438	749	1469	3017	3017		1	9606
FEEEGNPYYSSAR	0	1	Unmodified	1547.6529	0.65285163	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		16.439	16.439	2	2.1929E-17	6746	DP1061-8	163.9	163.9			0.88285	0.94635	NaN	1	0	Median	66208000	45472000	20736000	790	501	750	1470;1471;1472;1473	3018;3019;3020;3021;3022;3023;3024;3025	3021		8	9606
FEELCSDLFR	0	1	Unmodified	1314.5914	0.59143734	108;128	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			20.067	20.067	2	0.00031578	11384	DP1061-8	126.24	79.056			NaN	NaN	NaN	0	0	Median	20794000	0	20794000	791	128;108	751	1474	3026;3027	3026		2	9606
FEELNADLFR	0	1	Unmodified	1252.6088	0.60880197	113	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0			1			20.137	20.137	2	5.1027E-09	11421	DP1061-8	204.36	79.379			NaN	NaN	NaN	0	0	Median	24540000	0	24540000	792	113	752	1475	3028;3029	3028		2	9606
FELTGIPPAPR	0	1	Unmodified	1196.6554	0.65535823	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			18.619	18.619	2	0.018912	10683	DP1061-8	68.735	68.735			8.9906	9.483	NaN	1	0	Median	129810000	13855000	115950000	793	113	753	1476	3030	3030		1	9606
FEPIHGNFLLTGAYDNTAK	1	0	Unmodified	2107.0375	0.037454724	46	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			19.635	19.635	3	0.026034	10838	DP1061-8	68.189	40.678			NaN	NaN	NaN	0	0	Median	10374000	0	10374000	794	46	754	1477	3031;3032	3032		2	9606
FEPPQSDSDGQR	0	1	Unmodified	1361.5848	0.58477206	39	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				13.648	13.648	2	0.00242	3943	DP1061-7	106.2	76.532			NaN	NaN	NaN	0	0	Median	5434800	0	5434800	795	39	755	1478	3033;3034	3033		2	9606
FEPPQSDSDGQRR	0	2	Unmodified	1517.6859	0.68588309	39	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	1	2	0		1				12.612	12.612	3	0.014411	2831	DP1061-7	64.64	41.522			NaN	NaN	NaN	0	0	Median	14699000	0	14699000	796	39	756	1479	3035;3036	3036		2	9606
FEPYANPTKR	1	1	Unmodified	1221.6142	0.6142217	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3	0			1			13.668	13.668	3	5.5342E-07	4259	DP1061-8	128.86	89.709			2.2697	2.3636	NaN	1	0	Median	36350000	10205000	26145000	797	209	757	1480	3037;3038;3039;3040	3039		4	9606
FESPEVAER	0	1	Unmodified	1062.4982	0.49818889	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			14.569	14.569	2	9.9881E-07	5376	DP1061-8	141.52	108.91			2.2017	2.3388	NaN	1	0	Median	83620000	26093000	57526000	798	209	758	1481	3041;3042;3043;3044	3042		4	9606
FFFDVGSNK	1	0	Unmodified	1059.5025	0.50254598	280	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	4	0				1		19.537	19.537	2	0.0010294	11620	DP1061-9	123.98	84.32			NaN	NaN	NaN	0	0	Median	4401700	0	4401700	799	280	759	1482	3045;3046	3045		2	9606
FFVAPFPEVFGK	1	0	Unmodified	1383.7227	0.72270951	8	CON__P02662			yes	yes	0	0	0	3	0.816		1	1	1		23.008	23.008	2	0.0036318	15799	DP1061-9	104.42	65.171		+	NaN	NaN	NaN	0	0	Median	83917000	83917000	0	800	8	760	1483;1484;1485	3047;3048;3049;3050;3051;3052	3052		6	
FGAYIVDGLR	0	1	Unmodified	1109.5869	0.58694431	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.2	1.17	2	1	1	1		19.763	19.763	2	0.00018703	11200	DP1061-9	124.08	105.3			0.93664	1.0187	8.237	4	0	Median	249830000	135260000	114570000	801	309;34	761	1486;1487;1488;1489;1490	3053;3054;3055;3056;3057;3058;3059;3060;3061;3062;3063;3064	3061		12	9606
FGDPVVQSDMK	1	0	Oxidation (M)	1237.5649	0.56488824	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	0	3	0			1			14.943	14.943	2	0.021345	5663	DP1061-8	76.843	51.968			NaN	NaN	NaN	0	0	Median	19907000	0	19907000	802	108	762	1491	3065	3065	130	1	9606
FGEYNSNMSPEEK	1	0	Oxidation (M)	1546.6246	0.62458797	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	1	0	3	1		1		1		14.261	14.261	2	0.00069742	4862	DP1061-9	111.86	82.322			NaN	NaN	NaN	0	0	Median	12975000	0	12975000	803	268	763	1492;1493	3066;3067;3068;3069	3069	331	4	9606
FGQGGAGPVGGQGPR	0	1	Unmodified	1340.6585	0.65854613	139	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				14.218	14.218	2	0.0059464	4720	DP1061-7	88.056	70.237			NaN	NaN	NaN	0	0	Median	15823000	0	15823000	804	139	764	1494	3070;3071	3071		2	9606
FGSGMNMGR	0	1	Oxidation (M)	971.39532	0.39532049	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			12.83	12.83	2	0.005102	3279	DP1061-8	90.37	85.635			2.5197	2.7194	NaN	1	0	Median	31388000	9252700	22135000	805	209	765	1495	3072;3073	3073	257	2	9606
FGYVDFESAEDLEK	1	0	Unmodified	1647.7304	0.73043325	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0.816		1	1	1		20.618	20.618	2	2.9482E-05	12497	DP1061-7	172.61	152.41			NaN	NaN	NaN	0	0	Median	100980000	0	100980000	806	134	766	1496;1497;1498	3074;3075;3076;3077;3078;3079	3074		6	9606
FHFIDIYLDELSK	1	0	Unmodified	1638.8294	0.82935943	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1		1		1		22.464	22.464	3	0.035895	15169	DP1061-9	62.732	42.351			NaN	NaN	NaN	0	0	Median	12339000	0	12339000	807	339	767	1499;1500	3080;3081;3082	3082		3	9606
FIDPFCK	1	0	Unmodified	925.43677	0.4367746	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1		1		1		18.776	18.776	2	0.033201	10092	DP1061-7	88.643	48.375			NaN	NaN	NaN	0	0	Median	214230000	0	214230000	808	339	768	1501;1502	3083;3084;3085	3083		3	9606
FIDVGGYK	1	0	Unmodified	897.45962	0.45961853	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				16.624	16.624	2	0.0062665	7885	DP1061-7	114.78	55.142			NaN	NaN	NaN	0	0	Median	23857000	0	23857000	809	454	769	1503	3086;3087	3087		2	9606
FIEGISEK	1	0	Unmodified	921.48075	0.48074791	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		2				15.233	15.233	2	0.0096519	5985	DP1061-7	108.09	42.284			NaN	NaN	NaN	0	0	Median	0	0	0	810	485	770	1504;1505	3088;3089	3089		2	9606
FIEIAAR	0	1	Unmodified	818.46504	0.46503826	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				16.072	16.072	2	0.03822	7021	DP1061-7	74.439	29.466			8.7547	9.3912	NaN	1	0	Median	87804000	9463700	78340000	811	281	771	1506	3090;3091	3090		2	9606
FIGPSPEVVR	0	1	Unmodified	1099.6026	0.60259438	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		16.666	16.666	1;2	0.00031534	7784	DP1061-7	68.383	34.586			0.79225	0.8223	8.4397	5	0	Median	1298400000	727860000	570550000	812	116	772	1507;1508;1509;1510;1511	3092;3093;3094;3095;3096;3097;3098;3099;3100;3101	3098		9	9606
FIGPSPEVVRK	1	1	Unmodified	1227.6976	0.69755739	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		3				14.805	14.805	2;3	7.2153E-05	5509	DP1061-7	166.66	110.64			0.76913	0.82666	NaN	1	0	Median	136620000	71759000	64861000	813	116	773	1512;1513;1514	3102;3103;3104;3105;3106	3103		4	9606
FIIGSVSEDNSEDEISNLVK	1	0	Unmodified	2194.0641	0.064122984	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.3	0.781	17	1	1	1		27.239	27.239	2	1.8881E-183	12445	DP1061-6	307.15	272.63			0.82217	0.91903	13.808	11	0	Median	228580000	117870000	110710000	814	309	774	1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533;1534	3107;3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146;3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158	3113		52	9606
FIMESGAK	1	0	Oxidation (M)	897.4266	0.42660385	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	5	0					1	12.493	12.493	2	0.006109	3031	DP1061-10	92.47	19.681			5.4885	5.4455	NaN	1	0	Median	56546000	8588700	47957000	815	140	775	1535	3159;3160	3159	187	2	9606
FINNEYYPADLQVAPTQDLR	0	1	Unmodified	2366.1543	0.1542754	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	2					21.023	21.023	2	0.00031465	11334	DP1061-6	109.84	76.634			NaN	NaN	NaN	0	0	Median	0	0	0	816	68	776	1536;1537	3161;3162	3161		2	9606
FITDNTVEER	0	1	Unmodified	1222.583	0.58298115	53	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	2	0		1				15.389	15.389	2	0.0020638	6106	DP1061-7	116.37	61.308			NaN	NaN	NaN	0	0	Median	13829000	0	13829000	817	53	777	1538	3163;3164	3164		2	9606
FKMPEMNIK	2	0	2 Oxidation (M)	1168.5621	0.56205147	301	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	2	1	3	0			1			12.645	12.645	3	0.0033665	3145	DP1061-8	97.635	22.406			NaN	NaN	NaN	0	0	Median	3126700	3126700	0	818	301	778	1539	3165	3165	370;371	1	9606
FLAVGLVDNTVR	0	1	Unmodified	1302.7296	0.7295858	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				19.515	19.515	2	0.00024389	11248	DP1061-7	121.5	46.123			NaN	NaN	NaN	0	0	Median	3322100	0	3322100	819	356	779	1540	3166	3166		1	9606
FLEEFITPIVK	1	0	Unmodified	1334.7486	0.74858991	115	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	0		1				21.835	21.835	2	0.00067765	14128	DP1061-7	138.98	90.552			NaN	NaN	NaN	0	0	Median	4495900	0	4495900	820	115	780	1541	3167;3168	3167		2	9606
FLEQQNQVLQTK	1	0	Unmodified	1474.778	0.77799256	80;20	CON__P35908v2;P35908;CON__P35908;CON__Q6NXH9;CON__Q9R0H5;CON__Q7Z794;Q7Z794;P04264;CON__P04264	KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	no	no	0	0	0	4.25	1.3	1	1		2	8	16.806	16.806	2	1.1043E-22	5899	DP1061-6	234.9	141.72		+	NaN	NaN	NaN	0	0	Median	552140000	552140000	0	821	20;80	781	1542;1543;1544;1545;1546;1547;1548;1549;1550;1551;1552;1553	3169;3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184	3177		16	9606
FLGPEDSHVVVASNSPCLK	1	0	Unmodified	2055.0095	0.0095254139	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	2	0		1				17.156	17.156	3	0.0070253	8566	DP1061-7	79.489	54.147			NaN	NaN	NaN	0	0	Median	10160000	0	10160000	822	303	782	1554	3185	3185		1	9606
FLHKHDLDLICR	1	1	Unmodified	1565.8137	0.81366656	163;233	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	1	3.67	0.471			1	2		16.197	16.197	2;3	6.5381E-05	6895	DP1061-9	124.6	97.951			NaN	NaN	NaN	0	0	Median	188570000	0	188570000	823	163;233	783	1555;1556;1557	3186;3187;3188;3189;3190	3189		5	9606
FLNRHDLDLICR	0	2	Unmodified	1570.8038	0.80383016	234	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	1	4	0				1		17.318	17.318	3	0.0035811	8772	DP1061-9	86.772	56.837			NaN	NaN	NaN	0	0	Median	8136500	0	8136500	824	234	784	1558	3191;3192	3191		2	9606
FLPAVSDENSK	1	0	Unmodified	1205.5928	0.59281755	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				15.386	15.386	2	0.013641	6209	DP1061-7	85.862	48.303			NaN	NaN	NaN	0	0	Median	8834700	0	8834700	825	184	785	1559	3193	3193		1	9606
FLPAVSDENSKR	1	1	Unmodified	1361.6939	0.69392858	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	1	2	0		1				14.093	14.093	2	0.017375	4620	DP1061-7	96.665	28.768			NaN	NaN	NaN	0	0	Median	8829500	0	8829500	826	184	786	1560	3194	3194		1	9606
FLPGYVGGIQEGAVTPAGVVNK	1	0	Unmodified	2172.1579	0.15790421	527	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		20.009	20.009	2	0.00026714	12176	DP1061-9	109.48	82.771			NaN	NaN	NaN	0	0	Median	4799100	0	4799100	827	527	787	1561	3195;3196	3195		2	9606
FLQGDSFLNEDLNQLIK	1	0	Unmodified	1993.0157	0.015656649	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				22.978	22.978	2	2.649E-07	15401	DP1061-7	128.68	92.147			NaN	NaN	NaN	0	0	Median	4546800	0	4546800	828	428	788	1562	3197;3198	3197		2	9606
FLSDVYPDGFK	1	0	Unmodified	1286.6183	0.61830402	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		21.256	21.256	2	1.2597E-10	10461	DP1061-8	148.69	113.39			0.85233	0.90064	1.9092	2	0	Median	230510000	134500000	96006000	829	86	789	1563;1564;1565;1566	3199;3200;3201;3202;3203;3204;3205;3206	3200		8	9606
FLTFAER	0	1	Unmodified	882.45995	0.45995289	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					17.611	17.611	2	0.0046282	7705	DP1061-6	110.63	62.785			NaN	NaN	NaN	0	0	Median	11464000	0	11464000	830	68	790	1567	3207;3208	3207		2	9606
FLVQNIHTLAELK	1	0	Unmodified	1524.8664	0.86641364	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				2		18.826	18.826	2;3	0.0011177	10598	DP1061-9	98.368	53.729			NaN	NaN	NaN	0	0	Median	46547000	0	46547000	831	427	791	1568;1569	3209;3210;3211;3212;3213;3214	3209		6	9606
FLYDDNQR	0	1	Unmodified	1069.4829	0.48287317	115	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	yes	no	0	0	0	2	0		1				15.64	15.64	2	0.030814	6457	DP1061-7	77.741	40.647			NaN	NaN	NaN	0	0	Median	6765900	0	6765900	832	115	792	1570	3215	3215		1	9606
FLYECPWR	0	1	Unmodified	1169.5328	0.53280025	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.577	1	4	1			22.688	22.688	2	1.1978E-09	10945	DP1061-7	151.17	126.25			0.88233	0.92686	1.0454	2	0	Median	460480000	241050000	219440000	833	116	793	1571;1572;1573;1574;1575;1576	3216;3217;3218;3219;3220;3221;3222;3223;3224;3225;3226	3220		11	9606
FLYIWPNAR	0	1	Unmodified	1178.6237	0.62366417	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.12	0.331			7	1		27.844	27.844	2	2.732E-06	12517	DP1061-8	138.85	138.85			0.86735	0.8921	26.69	5	0	Median	734640000	390890000	343750000	834	501	794	1577;1578;1579;1580;1581;1582;1583;1584	3227;3228;3229;3230;3231;3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250	3230		24	9606
FLYSELMK	1	0	Oxidation (M)	1045.5154	0.51541885	222	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	2	0		1				17.335	17.335	2	0.023287	8797	DP1061-7	79.469	33.34			NaN	NaN	NaN	0	0	Median	9213800	0	9213800	835	222	795	1585	3251	3251	286	1	9606
FMSAYEQR	0	1	Oxidation (M)	1046.4491	0.4491302	359	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	0	3	0			1			13.48	13.48	2	0.014761	4075	DP1061-8	82.241	52.864			1.9224	2.1003	NaN	1	0	Median	14728000	6498800	8229500	836	359	796	1586	3252	3252	468	1	9606
FMYDPQTDQNIK	1	0	Oxidation (M)	1514.6711	0.67114423	442	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	1	0	2	0		1				16.102	16.102	2	0.004301	7047	DP1061-7	91.636	67.405			NaN	NaN	NaN	0	0	Median	7977300	0	7977300	837	442	797	1587	3253	3253	529	1	9606
FNADEFEDMVAEK	1	0	Oxidation (M)	1559.645	0.64498906	148	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	5	0					1	20.949	20.949	2	0.0026853	9735	DP1061-10	93.839	63.904			NaN	NaN	NaN	0	0	Median	6420200	0	6420200	838	148	798	1588	3254	3254	195	1	9606
FNADEFEDMVAEKR	1	1	Oxidation (M)	1715.7461	0.74610008	148	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	5	0					3	23.973	23.973	3	0.0083136	12533	DP1061-10	76.262	50.544			NaN	NaN	NaN	0	0	Median	12553000	0	12553000	839	148	799	1589;1590;1591	3255;3256;3257	3257	195	3	9606
FPCLEEK	1	0	Unmodified	921.4266	0.42660385	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				15.946	15.946	2	0.010266	6952	DP1061-7	104.45	39.644			NaN	NaN	NaN	0	0	Median	19236000	0	19236000	840	485	800	1592	3258;3259	3259		2	9606
FPGDSVVTGR	0	1	Unmodified	1033.5193	0.51925868	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			16.319	16.319	2	0.0081404	6878	DP1061-8	93.649	50.403			0.79691	0.85363	NaN	1	0	Median	68247000	26572000	41675000	841	87	801	1593;1594	3260;3261;3262;3263	3261		4	9606
FPGQLNADLR	0	1	Unmodified	1129.588	0.58800695	265;98;328;81;320;368;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	3.33	0.471			2	1		21.998	21.998	2	0.00022336	8656	DP1061-9	123.21	67.838			3.9148	4.1855	NaN	1	0	Median	233820000	35917000	197900000	842	98;265;328;320;368;81;471	802	1595;1596;1597	3264;3265;3266;3267;3268;3269;3270;3271;3272;3273;3274;3275	3273		12	9606
FPGQLNADLRK	1	1	Unmodified	1257.683	0.68296996	265;98;328;81;320;368;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	1	3.5	0.5			1	1		15.669	15.669	2;3	0.0003448	6295	DP1061-8	99.568	67.725			4.0096	4.1754	NaN	1	0	Median	56122000	9804300	46318000	843	98;265;328;320;368;81;471	803	1598;1599	3276;3277;3278	3277		3	9606
FPGYDSESKEFNAEVHR	1	1	Unmodified	2010.9072	0.90716883	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	4	0				1		16.384	16.384	3	2.7502E-11	7481	DP1061-9	179.97	140.46			NaN	NaN	NaN	0	0	Median	10600000	0	10600000	844	185	804	1600	3279	3279		1	9606
FPLTTESAMK	1	0	Oxidation (M)	1139.5533	0.55326092	245	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	1	0	5	0					1	15.616	15.616	2	0.037616	6801	DP1061-10	72.23	72.23			NaN	NaN	NaN	0	0	Median	12693000	0	12693000	845	245	805	1601	3280	3280		1	9606
FPQLDSTSFANSR	0	1	Unmodified	1468.6947	0.69465686	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					18.437	18.437	2	0.0045072	8651	DP1061-6	91.469	36.405			NaN	NaN	NaN	0	0	Median	5666000	0	5666000	846	194	806	1602	3281;3282	3282		2	9606
FPSLLTHNENMVAK	1	0	Oxidation (M)	1615.8028	0.8028271	256	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					2	25.338	25.338	2;3	0.00079603	14051	DP1061-10	105.03	63.328			NaN	NaN	NaN	0	0	Median	72131000	0	72131000	847	256	807	1603;1604	3283;3284;3285;3286;3287	3286	314	5	9606
FQAQSLGTTYIYDIPEMFR	0	1	Oxidation (M)	2295.0882	0.088169665	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.75	0.829	2	1	1			22.735	22.735	2	2.9743E-08	13072	DP1061-6	112.02	112.02			0.80896	0.89018	0.72009	2	0	Median	77264000	39047000	38217000	848	309	808	1605;1606;1607;1608	3288;3289;3290;3291;3292;3293;3294;3295	3288	386	8	9606
FQAQSLGTTYIYDIPEMFR	0	1	Unmodified	2279.0933	0.093255043	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					24.384	24.384	2	0.00011335	14846	DP1061-6	115.12	58.914			1.2357	1.3819	NaN	1	0	Median	3004500	1439200	1565300	849	309	808	1609;1610	3296;3297	3297		2	9606
FQDGAIR	0	1	Unmodified	805.40825	0.40825167	496	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	2	0		1				13.294	13.294	2	0.010881	3673	DP1061-7	104.11	38.439			NaN	NaN	NaN	0	0	Median	13305000	0	13305000	850	496	809	1611	3298;3299	3299		2	9606
FQDGVLEPDFPR	0	1	Unmodified	1418.683	0.68302954	22	CON__Q3ZBS7			yes	yes	0	0	0	3	0			1			19.366	19.366	2	0.041931	10536	DP1061-8	72.2	41.588		+	NaN	NaN	NaN	0	0	Median	7690400	7690400	0	851	22	810	1612	3300	3300		1	9606
FQEAGELYNR	0	1	Unmodified	1225.5728	0.57275081	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					15.735	15.735	2	0.0047563	5453	DP1061-6	107.69	44.16			NaN	NaN	NaN	0	0	Median	7783900	0	7783900	852	340	811	1613	3301;3302;3303;3304	3301		4	9606
FQNMLEFQTPELLR	0	1	Oxidation (M)	1780.8818	0.8818057	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	1	0	2	0		1				20.88	20.88	2	0.001116	12906	DP1061-7	102.4	65.729			NaN	NaN	NaN	0	0	Median	5280300	0	5280300	853	497	812	1614	3305;3306	3305	596	2	9606
FQPLFGDFAAEK	1	0	Unmodified	1368.6714	0.67140222	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		20.825	20.825	2	0.026351	13298	DP1061-9	76.332	39.267			NaN	NaN	NaN	0	0	Median	7646700	0	7646700	854	350	813	1615	3307	3307		1	9606
FQQVPTDALANK	1	0	Unmodified	1330.6881	0.68811492	390	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	2	0		1				16.135	16.135	2	0.026538	7117	DP1061-7	76.282	19.719			NaN	NaN	NaN	0	0	Median	6465800	0	6465800	855	390	814	1616	3308;3309	3308		2	9606
FQTIPLYYIEDHNGR	0	1	Unmodified	1864.9108	0.91079765	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	4	0				1		19.647	19.647	3	0.0037367	11785	DP1061-9	88.706	63.682			NaN	NaN	NaN	0	0	Median	0	0	0	856	341	815	1617	3310	3310		1	9606
FQTMEEK	1	0	Unmodified	911.40587	0.4058684	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		12.837	12.837	2	8.4426E-05	3133	DP1061-9	116.9	66.879			23.359	24.417	NaN	1	0	Median	22414000	1239400	21175000	857	169	816	1618	3311;3312	3312		2	9606
FQVVINGR	0	1	Unmodified	931.52395	0.52395013	222	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	2	0		1				16.288	16.288	2	0.018063	7383	DP1061-7	94.407	70.884			NaN	NaN	NaN	0	0	Median	6635800	0	6635800	858	222	817	1619	3313;3314	3313		2	9606
FREDHPDLIQNAK	1	1	Unmodified	1581.79	0.78995423	129	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	3	0			1			14.127	14.127	3	0.0017292	4862	DP1061-8	90.759	67.339			NaN	NaN	NaN	0	0	Median	15177000	0	15177000	859	129	818	1620	3315;3316	3316		2	9606
FSALQQAVPTESTDNRR	0	2	Unmodified	1918.9497	0.94970235	290	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	1.5	0.5	1	1				15.6	15.6	3	4.4917E-08	5320	DP1061-6	129.77	88.151			NaN	NaN	NaN	0	0	Median	15988000	0	15988000	860	290	819	1621;1622	3317;3318;3319	3317		3	9606
FSNSIPQSQTGNSETATPTNVDLPQVIPK	1	0	Unmodified	3069.5255	0.52547285	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				19.509	19.509	3	0.003647	11245	DP1061-7	61.101	34.679			NaN	NaN	NaN	0	0	Median	8691700	0	8691700	861	184	820	1623	3320;3321;3322;3323	3321		4	9606
FSNSSSSNEFSK	1	0	Unmodified	1319.563	0.56297399	23	CON__Q5D862;Q5D862	FLG2	Filaggrin-2	yes	no	0	0	0	1	0	1					13.391	13.391	2	0.0040398	3135	DP1061-6	95.483	23.158		+	NaN	NaN	NaN	0	0	Median	2024800	2024800	0	862	23	821	1624	3324;3325	3325		2	9606
FSPAGPILSIR	0	1	Unmodified	1156.6604	0.66044361	117	P11940;Q9H361;Q4VXU2;Q5JQF8	PABPC1;PABPC3;PABPC1L;PABPC1L2A	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 1-like 2	yes	no	0	0	0	3	0			1			19.193	19.193	2	0.0056883	10226	DP1061-8	93.667	67.93			NaN	NaN	NaN	0	0	Median	14590000	0	14590000	863	117	822	1625	3326	3326		1	9606
FSPDGELYASGSEDGTLR	0	1	Unmodified	1899.8487	0.8486509	554	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				1		18.302	18.302	2	0.020124	10019	DP1061-9	82.55	60.017			NaN	NaN	NaN	0	0	Median	0	0	0	864	554	823	1626	3327	3327		1	9606
FSSCGGGGGSFGAGGGFGSR	0	1	Unmodified	1764.7274	0.72743033	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				16.854	16.854	2	4.1728E-07	6793	DP1061-6	122.93	101.48		+	NaN	NaN	NaN	0	0	Median	6847100	6847100	0	865	80	824	1627;1628	3328;3329;3330	3329		3	9606
FSSSSGYGGGSSR	0	1	Unmodified	1234.5214	0.52144352	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				12.691	12.691	2	3.0476E-15	2860	DP1061-7	210.08	167.68		+	NaN	NaN	NaN	0	0	Median	221110000	221110000	0	866	19	825	1629;1630	3331;3332;3333;3334	3334		4	9606
FSSVTVSTIDEEEEEIEAR	0	1	Unmodified	2168.9961	0.996103	493	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	5	0					1	23.274	23.274	2	0.0071891	11890	DP1061-10	90.367	62.813			NaN	NaN	NaN	0	0	Median	3951300	0	3951300	867	493	826	1631	3335;3336	3336		2	9606
FSVCVLGDQQHCDEAK	1	0	Unmodified	1891.8193	0.8192818	256	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	23.838	23.838	2	4.5087E-07	12357	DP1061-10	122.66	91.023			NaN	NaN	NaN	0	0	Median	7893800	0	7893800	868	256	827	1632	3337;3338;3339	3338		3	9606
FSWFVDDVEVNTATTKPR	1	1	Unmodified	2111.0324	0.032369346	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	3	0.816		1	1	1		20.112	20.112	3	4.9231E-08	11374	DP1061-8	145.04	118.83		+	NaN	NaN	NaN	0	0	Median	39790000	39790000	0	869	5	828	1633;1634;1635	3340;3341;3342;3343;3344;3345	3343		6	
FTAGAFSDHMALLR	0	1	Oxidation (M)	1551.7504	0.7503976	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	1	0	2	0		1				17.382	17.382	3	0.013455	8895	DP1061-7	66.784	29.64			NaN	NaN	NaN	0	0	Median	6031300	0	6031300	870	497	829	1636	3346;3347	3347	597	2	9606
FTAVEDQYYCVDCYK	1	0	Unmodified	1959.8019	0.8019004	324	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		18.722	18.722	2	1.202E-05	10569	DP1061-9	138.89	118.46			NaN	NaN	NaN	0	0	Median	6575400	0	6575400	871	324	830	1637	3348;3349	3348		2	9606
FTDADKETEIVK	2	0	Unmodified	1394.6929	0.69292553	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		2				14.089	14.089	2;3	3.2019E-14	4604	DP1061-7	218.15	171.33			NaN	NaN	NaN	0	0	Median	33762000	0	33762000	872	289	831	1638;1639	3350;3351;3352;3353	3353		4	9606
FTDILVR	0	1	Unmodified	862.49125	0.49125301	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	2	0		1				17.465	17.465	2	0.0050696	8974	DP1061-7	108.98	73.782			NaN	NaN	NaN	0	0	Median	21111000	0	21111000	873	45	832	1640	3354;3355	3355		2	9606
FTPDIPTMLYHGTQEER	0	1	Oxidation (M)	2049.9466	0.94659081	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		2				17.754	17.754	2;3	0.00056261	9244	DP1061-7	95.067	75.019			NaN	NaN	NaN	0	0	Median	65961000	0	65961000	874	512	833	1641;1642	3356;3357;3358;3359	3356	614	4	9606
FTQTSGETTDADKEPAGEDK	2	0	Unmodified	2125.9288	0.92875171	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.816	1	1	1			12.6	12.6	3	2.2499E-16	2180	DP1061-6	180.32	159.56			NaN	NaN	NaN	0	0	Median	21175000	0	21175000	875	182	834	1643;1644;1645	3360;3361;3362;3363;3364;3365;3366;3367	3360		8	9606
FVHSENQHLVSPEALDFLDK	1	0	Unmodified	2324.1437	0.14371071	266	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	4	0				1		18.97	18.97	3	0.0023874	10881	DP1061-9	93.371	53.387			NaN	NaN	NaN	0	0	Median	9405300	0	9405300	876	266	835	1646	3368;3369;3370	3369		3	9606
FVIATSTK	1	0	Unmodified	865.49092	0.49091866	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		14.761	14.761	2	0.0025119	5442	DP1061-9	104.37	57.702			24.785	25.909	NaN	1	0	Median	206770000	8536400	198240000	877	287	836	1647	3371;3372;3373;3374	3372		4	9606
FVINYDYPNSSEDYIHR	0	1	Unmodified	2130.9647	0.96468371	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			2			19.001	19.001	3	1.1544E-08	9725	DP1061-8	166.9	140.54			NaN	NaN	NaN	0	0	Median	74280000	0	74280000	878	130	837	1648;1649	3375;3376;3377;3378	3377		4	9606
FVLNLIK	1	0	Unmodified	845.53747	0.53747492	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		19.527	19.527	2	0.01596	11559	DP1061-9	101.33	74.208			NaN	NaN	NaN	0	0	Median	35454000	0	35454000	879	427	838	1650	3379	3379		1	9606
FVNLISER	0	1	Unmodified	976.53418	0.53418046	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				17.431	17.431	2	0.0062665	9053	DP1061-7	114.78	70.975			NaN	NaN	NaN	0	0	Median	13021000	0	13021000	880	558	839	1651	3380;3381	3381		2	9606
FVVMVTPEDLK	1	0	Oxidation (M)	1292.6686	0.66862503	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	2.29	0.881	1	4	1	1		18.643	18.643	2	1.3211E-10	8797	DP1061-6	146.69	105.27			0.82653	0.89447	13.501	4	0	Median	678260000	372450000	305810000	881	309;34	840	1652;1653;1654;1655;1656;1657;1658	3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393;3394;3395;3396;3397;3398;3399;3400	3382	30	19	9606
FVVMVTPEDLK	1	0	Unmodified	1276.6737	0.67371041	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.2	1.17	2	1	1	1		19.793	19.793	2	2.0085E-10	10097	DP1061-6	143.37	109.45			0.79652	0.862	11.691	4	0	Median	157470000	90000000	67472000	882	309;34	840	1659;1660;1661;1662;1663	3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413;3414;3415;3416;3417;3418;3419;3420	3403		20	9606
FWDFAGMDASFK	1	0	Oxidation (M)	1436.6071	0.60708741	517	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	1	0	3	0			1			21.022	21.022	2	0.01792	12612	DP1061-8	77.379	47.569			NaN	NaN	NaN	0	0	Median	6433100	0	6433100	883	517	841	1664	3421;3422	3422	630	2	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	0	1	Unmodified	3101.4003	0.40027234	98	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	4	0				1		20.003	20.003	3	0.0017961	12314	DP1061-9	69.619	20.752			NaN	NaN	NaN	0	0	Median	9327200	0	9327200	884	98	842	1665	3423	3423		1	9606
FYEEVHDLER	0	1	Unmodified	1335.6095	0.60953025	460;221	Q99733;P55209	NAP1L4;NAP1L1	Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1	no	no	0	0	0	4	0				1		15.842	15.842	2	0.0003768	6832	DP1061-9	138.98	45.601			NaN	NaN	NaN	0	0	Median	11865000	0	11865000	885	460;221	843	1666	3424;3425	3424		2	9606
FYNLVLLPR	0	1	Unmodified	1133.6597	0.65971533	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		21.123	21.123	2	0.0010216	13587	DP1061-9	124.08	97.032			NaN	NaN	NaN	0	0	Median	18738000	0	18738000	886	329	844	1667	3426;3427	3427		2	9606
FYTHLYK	1	0	Unmodified	970.49125	0.49125301	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				14.608	14.608	2	0.039622	5350	DP1061-7	76.847	23.292			NaN	NaN	NaN	0	0	Median	12570000	0	12570000	887	428	845	1668	3428	3428		1	9606
FYVPPTQEDGVDPVEAFAQNVLSK	1	0	Unmodified	2649.2962	0.29624819	297	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	3	0			2			23.937	23.937	2;3	0.0035515	16173	DP1061-8	93.768	74.594			NaN	NaN	NaN	0	0	Median	5519600	0	5519600	888	297	846	1669;1670	3429;3430;3431;3432	3431		4	9606
GAAGDWGER	0	1	Unmodified	917.39914	0.39914354	345	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	4.5	0.5				1	1	13.79	13.79	2	0.0011775	4365	DP1061-10	122.18	69.46			NaN	NaN	NaN	0	0	Median	24771000	0	24771000	889	345	847	1671;1672	3433;3434;3435;3436	3433		4	9606
GADSELSTVPSVTK	1	0	Unmodified	1389.6987	0.69873919	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				15.924	15.924	2	0.014774	6769	DP1061-7	78.903	37.786			NaN	NaN	NaN	0	0	Median	26341000	0	26341000	890	184	848	1673	3437;3438	3438		2	9606
GAEAANVTGPDGVPVEGSR	0	1	Unmodified	1781.8544	0.85440498	126	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	3.33	0.471			2	1		15.685	15.685	2	5.5035E-12	6529	DP1061-9	158.89	123.82			NaN	NaN	NaN	0	0	Median	10812000	0	10812000	891	126	849	1674;1675;1676	3439;3440;3441;3442	3442		4	9606
GAEAANVTGPGGVPVQGSK	1	0	Unmodified	1694.8588	0.85876208	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		14.829	14.829	2	2.0219E-11	5476	DP1061-9	142.19	97.627			NaN	NaN	NaN	0	0	Median	64382000	0	64382000	892	262	850	1677	3443;3444	3444		2	9606
GAEQLAEGGR	0	1	Unmodified	986.47812	0.47812215	298	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				12.988	12.988	2	0.0068671	3338	DP1061-7	99.013	51.053			NaN	NaN	NaN	0	0	Median	7580600	0	7580600	893	298	851	1678	3445;3446	3446		2	9606
GAETELVR	0	1	Unmodified	873.4556	0.45559579	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				13.586	13.586	2	0.029379	3900	DP1061-7	79.116	23.675			NaN	NaN	NaN	0	0	Median	28364000	0	28364000	894	184	852	1679	3447;3448	3447		2	9606
GAFFMDEDEEVYKR	1	1	Oxidation (M)	1750.7509	0.75085111	220	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	1	1	4	0				1		17.062	17.062	3	0.00082048	8435	DP1061-9	96.23	78.485			NaN	NaN	NaN	0	0	Median	10588000	0	10588000	895	220	853	1680	3449;3450	3450	283	2	9606
GAFGKPQGTVAR	1	1	Unmodified	1187.6411	0.64110515	148	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	1	5	0					1	12.518	12.518	3	5.2404E-05	3078	DP1061-10	127.83	76.069			NaN	NaN	NaN	0	0	Median	17127000	0	17127000	896	148	854	1681	3451;3452	3451		2	9606
GAFSPFGNIIDLSMDPPR	0	1	Oxidation (M)	1948.9353	0.93529784	133	P18615	NELFE	Negative elongation factor E	yes	yes	0	1	0	4	0				1		22.83	22.83	2	0.0010941	15681	DP1061-9	103.14	73.133			NaN	NaN	NaN	0	0	Median	4446600	0	4446600	897	133	855	1682	3453;3454	3454	180	2	9606
GAGQQQSQEMMEVDR	0	1	2 Oxidation (M)	1724.7094	0.709397	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	2	0	4	0				1		12.482	12.482	2	6.0138E-12	2674	DP1061-9	196.02	160.37			NaN	NaN	NaN	0	0	Median	29648000	0	29648000	898	360	856	1683	3455;3456;3457	3455	471;472	3	9606
GAGQQQSQEMMEVDR	0	1	Oxidation (M)	1708.7145	0.71448238	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		13.45	13.45	2	2.3734E-05	3804	DP1061-9	120.77	90.202			NaN	NaN	NaN	0	0	Median	5351400	0	5351400	899	360	856	1684	3458;3459	3459	471;472	2	9606
GALQGSAWQVSSEDVR	0	1	Unmodified	1688.8118	0.81181188	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				17.672	17.672	2	0.0018035	9369	DP1061-7	95.401	44.115			NaN	NaN	NaN	0	0	Median	13135000	0	13135000	900	558	857	1685	3460;3461	3461		2	9606
GANAVGYTNYPDNVVFK	1	0	Unmodified	1827.8792	0.87916317	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.343	1	15	1			23.957	23.957	2	1.5851000000000002E-54	10093	DP1061-7	215.77	167.16			0.9166	0.87297	10.165	8	0	Plateau	488270000	257790000	230490000	901	116	858	1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701;1702	3462;3463;3464;3465;3466;3467;3468;3469;3470;3471;3472;3473;3474;3475;3476;3477;3478;3479;3480;3481;3482;3483;3484;3485;3486;3487;3488;3489;3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504	3469		42	9606
GANDFMCDEMER	0	1	2 Oxidation (M)	1505.5221	0.5221135	131	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	2	0	3	0			1			14.034	14.034	2	0.00039478	4756	DP1061-8	117.14	117.14			NaN	NaN	NaN	0	0	Median	7709900	0	7709900	902	131	859	1703	3505;3506	3506	177;178	2	9606
GAPAAATAPAPTAHK	1	0	Unmodified	1330.6993	0.69934831	434	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	5	0					2	12.413	12.413	2;3	0.00017109	2944	DP1061-10	115	82.786			NaN	NaN	NaN	0	0	Median	18956000	0	18956000	903	434	860	1704;1705	3507;3508;3509;3510	3510		4	9606
GASQAGMTGYGMPR	0	1	2 Oxidation (M)	1414.5969	0.59693343	164	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	2	0	5	0					1	12.611	12.611	2	4.5078E-06	3166	DP1061-10	134.3	103.69			NaN	NaN	NaN	0	0	Median	27233000	0	27233000	904	164	861	1706	3511;3512	3512	206;207	2	9606
GASQAGMTGYGMPR	0	1	Oxidation (M)	1398.602	0.6020188	164	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	1	0	5	0					2	14.115	14.115	2	0.035836	4618	DP1061-10	68.536	49.441			NaN	NaN	NaN	0	0	Median	0	0	0	905	164	861	1707;1708	3513;3514	3514	206;207	2	9606
GATGEPEVMEPALEGTGK	1	0	Oxidation (M)	1787.8247	0.82474434	496	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	1	0	2	0		1				15.945	15.945	2	1.5721E-07	6881	DP1061-7	130.61	81.615			NaN	NaN	NaN	0	0	Median	9826100	0	9826100	906	496	862	1709	3515;3516	3516	593	2	9606
GAVDGGLSIPHSTK	1	0	Unmodified	1337.6939	0.69392858	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		14.844	14.844	2	0.00055343	5551	DP1061-9	110.08	50.013			NaN	NaN	NaN	0	0	Median	22288000	0	22288000	907	185	863	1710	3517;3518	3518		2	9606
GAVEALAAALAHISGATSVDQR	0	1	Unmodified	2107.1022	0.10218025	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		2				23.192	23.192	2;3	0.00035714	15707	DP1061-7	96.993	55.592			NaN	NaN	NaN	0	0	Median	6536000	0	6536000	908	508	864	1711;1712	3519;3520;3521	3521		3	9606
GAVEIIFK	1	0	Unmodified	875.51165	0.5116541	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			18.154	18.154	1;2	0.0030874	8875	DP1061-8	100.74	9.7563			0.60831	0.64976	1.8261	2	0	Median	147190000	90131000	57056000	909	87	865	1713;1714	3522;3523;3524;3525	3522		4	9606
GAWSNVLR	0	1	Unmodified	901.477	0.47699993	85;118	P05141;P12235;P12236	SLC25A5;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	1	0	1					17.219	17.219	2	0.024433	7322	DP1061-6	79.116	49.274			2.4584	2.8074	NaN	1	0	Median	16193000	3851400	12342000	910	85;118	866	1715	3526	3526		1	9606
GCEVVVSGK	1	0	Unmodified	933.45897	0.45896661	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	5	0					1	12.518	12.518	2	0.032267	3137	DP1061-10	76.478	26.888			NaN	NaN	NaN	0	0	Median	42231000	0	42231000	911	140	867	1716	3527	3527		1	9606
GDADQASNILASFGLSAR	0	1	Unmodified	1791.8751	0.87514042	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				22.724	22.724	2	1.0468E-09	15170	DP1061-7	178.67	112.34			NaN	NaN	NaN	0	0	Median	7576700	0	7576700	912	180	868	1717	3528;3529	3528		2	9606
GDGPICLVLAPTR	0	1	Unmodified	1367.7231	0.72312022	130;440	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3.5	0.5			1	1		19.709	19.709	2	0.0022905	11231	DP1061-8	100.55	70.81			NaN	NaN	NaN	0	0	Median	65359000	0	65359000	913	130;440	869	1718;1719	3530;3531;3532;3533;3534;3535	3532		6	9606
GDSLSLKGETVNDCHAEIISR	1	1	Unmodified	2300.1067	0.10667328	222	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	2	0		1				15.909	15.909	3	2.367E-13	6858	DP1061-7	163.53	135.69			NaN	NaN	NaN	0	0	Median	8757000	0	8757000	914	222	870	1720	3536;3537;3538	3537		3	9606
GDTSEDASIHR	0	1	Acetyl (Protein N-term)	1228.532	0.53200821	438	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	1	0	0	1	0	1					13.281	13.281	2	0.011134	3037	DP1061-6	82.287	50.914			NaN	NaN	NaN	0	0	Median	0	0	0	915	438	871	1721	3539	3539		1	9606
GDVAEGDLIEHFSQFGTVEK	1	0	Unmodified	2177.0277	0.027677899	312	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	4	0				2		20.44	20.44	2;3	8.1982E-11	12830	DP1061-9	137.17	99.511			NaN	NaN	NaN	0	0	Median	11035000	0	11035000	916	312	872	1722;1723	3540;3541;3542	3542		3	9606
GEDEEENNLEVR	0	1	Unmodified	1431.6114	0.61138074	83	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	3	0			1			14.492	14.492	2	0.011401	5355	DP1061-8	86.189	19.227			NaN	NaN	NaN	0	0	Median	7254800	0	7254800	917	83	873	1724	3543	3543		1	9606
GEENLMDAQVK	1	0	Oxidation (M)	1248.5656	0.56561652	205	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	3	0			1			13.62	13.62	2	0.028953	4135	DP1061-8	74.173	46.401			NaN	NaN	NaN	0	0	Median	5304900	0	5304900	918	205	874	1725	3544	3544	252	1	9606
GELDLTGAK	1	0	Unmodified	902.47091	0.4709115	122	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	5	0					1	15.193	15.193	2	0.022154	5368	DP1061-10	82.279	30.943			NaN	NaN	NaN	0	0	Median	13412000	0	13412000	919	122	875	1726	3545	3545		1	9606
GELFVGQLPSEEMVMTGSQGATR	0	1	2 Oxidation (M)	2455.1359	0.13592449	473	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	2	0	3	0			1			19.19	19.19	2	7.3152E-08	10280	DP1061-8	128.45	79.747			NaN	NaN	NaN	0	0	Median	9724400	0	9724400	920	473	876	1727	3546;3547;3548	3547	571;572	3	9606
GESEFDSFR	0	1	Unmodified	1072.4462	0.44615331	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1.5	0.5	1	1				16.652	16.652	2	0.0011775	6556	DP1061-6	122.18	83.938			NaN	NaN	NaN	0	0	Median	11244000	0	11244000	921	497	877	1728;1729	3549;3550;3551;3552	3550		4	9606
GFAFVQYVNER	0	1	Unmodified	1328.6513	0.65133548	99	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		19.624	19.624	2	1.2734E-06	11677	DP1061-9	134.77	134.77			8.1296	8.6918	NaN	1	0	Median	57084000	6707900	50377000	922	99	878	1730	3553;3554	3553		2	9606
GFAFVTFDDHDSVDK	1	0	Unmodified	1698.7526	0.75256567	103	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		19.23	19.23	3	1.6948E-05	11180	DP1061-9	161.21	128.39			NaN	NaN	NaN	0	0	Median	19249000	0	19249000	923	103	879	1731	3555;3556	3556		2	9606
GFGFGGFAISAGK	1	0	Unmodified	1214.6084	0.60840804	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				20.673	20.673	2	0.011089	12688	DP1061-7	84.658	59.084			NaN	NaN	NaN	0	0	Median	7242800	0	7242800	924	402	880	1732	3557;3558	3558		2	9606
GFGFVCFSSPEEATK	1	0	Unmodified	1661.7396	0.73955814	117	P11940;Q13310;Q9H361;Q4VXU2	PABPC1;PABPC4;PABPC3;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like	yes	no	0	0	0	3	0			1			20.32	20.32	2	0.0011495	11724	DP1061-8	101.35	83.018			NaN	NaN	NaN	0	0	Median	19879000	0	19879000	925	117	881	1733	3559;3560	3560		2	9606
GFGFVDFLTK	1	0	Unmodified	1129.5808	0.5807963	557	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	2	0		1				22.68	22.68	2	0.02361	15083	DP1061-7	78.113	12.866			NaN	NaN	NaN	0	0	Median	2964900	0	2964900	926	557	882	1734	3561	3561		1	9606
GFGFVDFNSEEDAK	1	0	Unmodified	1560.6733	0.67325272	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0			1			20.201	20.201	2	0.0025553	11464	DP1061-8	94.767	62.037			NaN	NaN	NaN	0	0	Median	120550000	0	120550000	927	134	883	1735	3562	3562		1	9606
GFGFVSFER	0	1	Unmodified	1044.5029	0.50288033	117	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	0	3	0			1			19.944	19.944	2	0.010556	11186	DP1061-8	98.458	68.383			NaN	NaN	NaN	0	0	Median	17024000	0	17024000	928	117	884	1736	3563;3564	3563		2	9606
GFGFVTYATVEEVDAAMNAR	0	1	Oxidation (M)	2162.9943	0.99426928	103	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	0	4	0				2		21.929	21.929	2;3	7.9214E-08	14571	DP1061-9	123.59	105.36			NaN	NaN	NaN	0	0	Median	29454000	0	29454000	929	103	885	1737;1738	3565;3566;3567;3568	3566	126	4	9606
GFGFVTYATVEEVDAAMNARPHK	1	1	Oxidation (M)	2525.2009	0.20090801	103	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	4	0				2		19.561	19.561	3;4	6.1036E-08	11676	DP1061-9	124.63	110.02			NaN	NaN	NaN	0	0	Median	66522000	0	66522000	930	103	886	1739;1740	3569;3570;3571	3569	126	3	9606
GFGFVYFQNHDAADK	1	0	Unmodified	1714.774	0.77396981	312	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	4	0				2		18.781	18.781	2;3	3.8873E-05	10628	DP1061-9	118.24	92.262			NaN	NaN	NaN	0	0	Median	13318000	0	13318000	931	312	887	1741;1742	3572;3573;3574	3572		3	9606
GFKFDETEQALANER	1	1	Unmodified	1753.8271	0.8271276	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	2	0		2				17.538	17.538	2;3	0.0019659	9089	DP1061-7	88.108	61.079			NaN	NaN	NaN	0	0	Median	14552000	0	14552000	932	396	888	1743;1744	3575;3576;3577	3576		3	9606
GFQQISFVNSIATSK	1	0	Unmodified	1625.8413	0.8413211	115	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	0		1				19.868	19.868	2	0.00027418	11738	DP1061-7	110.8	69.637			NaN	NaN	NaN	0	0	Median	4539100	0	4539100	933	115	889	1745	3578;3579;3580	3580		3	9606
GFSGGMKDMYDQVLK	2	0	2 Oxidation (M)	1706.7644	0.76439269	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	2	1	1.67	0.471	1	2				15.453	15.453	2;3	1.7693E-07	5128	DP1061-6	128.08	109.35			0.87924	0.96498	3.473	3	0	Plateau	164850000	85198000	79653000	934	309;34	890	1746;1747;1748	3581;3582;3583;3584;3585;3586;3587;3588;3589;3590;3591;3592;3593	3584	31;32	13	9606
GFSGGMKDMYDQVLK	2	0	Oxidation (M)	1690.7695	0.76947806	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	1	1	0	1					16.694	16.694	3	0.032565	6746	DP1061-6	44.246	44.246			0.72605	0.77293	NaN	1	0	Median	15293000	9624100	5668900	935	309;34	890	1749	3594	3594	31;32	0	9606
GFSLLATEDKEALKK	3	0	Unmodified	1648.9036	0.903587	104	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0		1				16.199	16.199	3	0.00012856	7187	DP1061-7	116.9	88.792			NaN	NaN	NaN	0	0	Median	7089900	0	7089900	936	104	891	1750	3595;3596	3595		2	9606
GFSSGSAVVSGGSR	0	1	Unmodified	1253.6	0.60002819	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	3	1.41	1	1	1	1	1	14.208	14.208	2	2.1738E-06	3815	DP1061-6	179.42	145.33		+	NaN	NaN	NaN	0	0	Median	177510000	177510000	0	937	20	892	1751;1752;1753;1754;1755	3597;3598;3599;3600;3601;3602;3603;3604;3605	3599		9	9606
GFVDDIIQPSSTR	0	1	Unmodified	1433.7151	0.71505795	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.12	0.331			7	1		21.362	21.362	2	1.1443E-59	10002	DP1061-8	228.84	176.12			0.92826	0.96384	7.9613	3	0	Plateau	381800000	201480000	180320000	938	87	893	1756;1757;1758;1759;1760;1761;1762;1763	3606;3607;3608;3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629	3608		24	9606
GFVLQDTVEQLR	0	1	Unmodified	1403.7409	0.74087877	225	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				19.867	19.867	2	0.002317	11754	DP1061-7	106.88	67.258			NaN	NaN	NaN	0	0	Median	3537400	0	3537400	939	225	894	1764	3630;3631	3631		2	9606
GGAEQFMEETER	0	1	Oxidation (M)	1398.5722	0.57215846	461	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	3	0			1			14.388	14.388	2	8.9052E-05	5157	DP1061-8	136.5	97.196			NaN	NaN	NaN	0	0	Median	9345000	0	9345000	940	461	895	1765	3632;3633	3632	555	2	9606
GGAYYPVTVK	1	0	Unmodified	1053.5495	0.54949617	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		15.898	15.898	2	0.034714	6589	DP1061-9	66.27	66.27			0.89931	0.95028	1.0215	2	0	Median	131920000	71320000	60603000	941	501	896	1766;1767	3634;3635	3635		2	9606
GGDDLGTEIANTLYR	0	1	Unmodified	1593.7635	0.76346471	348	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				1		20.911	20.911	2	0.00079936	13362	DP1061-9	103.88	69.188			NaN	NaN	NaN	0	0	Median	5857400	0	5857400	942	348	897	1768	3636;3637	3636		2	9606
GGDSIGETPTPGASK	1	0	Unmodified	1372.647	0.64703797	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				13.626	13.626	2	0.00044992	4065	DP1061-7	115.29	76.511			NaN	NaN	NaN	0	0	Median	0	0	0	943	64	898	1769;1770	3638;3639	3639		2	9606
GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR	0	1	Unmodified	2398.0111	0.011133407	20	CON__P35908v2;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0.707		1	2	1		20.241	20.241	2	1.4738E-31	11641	DP1061-8	188.09	160.99		+	NaN	NaN	NaN	0	0	Median	24601000	24601000	0	944	20	899	1771;1772;1773;1774	3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650	3645		11	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	0	1	Unmodified	2382.9446	0.94456998	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.2	1.17	2	1	1	1		14.117	14.117	2;3	1.6084E-267	3806	DP1061-6	387.62	303.43		+	NaN	NaN	NaN	0	0	Median	117900000	117900000	0	945	80	900	1775;1776;1777;1778;1779	3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663	3652		13	9606
GGGGNFGPGPGSNFR	0	1	Unmodified	1376.6222	0.62216062	137	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		15.839	15.839	2	0.016611	6814	DP1061-9	77.387	45.452			NaN	NaN	NaN	0	0	Median	20143000	0	20143000	946	137	901	1780	3664;3665	3664		2	9606
GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR	0	1	Unmodified	2704.1538	0.15383448	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				20.128	20.128	2	1.4142E-12	11995	DP1061-7	166.28	132.07		+	NaN	NaN	NaN	0	0	Median	6608200	6608200	0	947	19	902	1781;1782	3666;3667;3668	3668		3	9606
GGLVSDAYGEDDFSR	0	1	Unmodified	1586.6849	0.68488004	530	Q9UHR5	SAP30BP	SAP30-binding protein	yes	yes	0	0	0	4	0				1		18.055	18.055	2	0.0015638	9694	DP1061-9	98.353	72.695			NaN	NaN	NaN	0	0	Median	4089000	0	4089000	948	530	903	1783	3669;3670	3669		2	9606
GGNFGFGDSR	0	1	Unmodified	1012.4363	0.43625733	137	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		15.852	15.852	2	0.006838	6750	DP1061-9	99.136	67.906			NaN	NaN	NaN	0	0	Median	14254000	0	14254000	949	137	904	1784	3671	3671		1	9606
GGNRFEPYANPTKR	1	2	Unmodified	1605.8012	0.80118762	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	2	3	0			1			13.436	13.436	4	0.0026206	4040	DP1061-8	69.456	69.456			2.0595	2.24	NaN	1	0	Median	30542000	9348000	21194000	950	209	905	1785	3672;3673	3673		2	9606
GGPNIITLADIVKDPVSR	1	1	Unmodified	1864.0418	0.04181182	266	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	1	4	0				2		20.878	20.878	2	1.686E-06	13368	DP1061-9	130.88	93.266			NaN	NaN	NaN	0	0	Median	0	0	0	951	266	906	1786;1787	3674;3675	3675		2	9606
GGPPCKPPAPEDEDEAWR	1	1	Unmodified	2006.8792	0.87923952	191	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	1	1	0	1					15.639	15.639	3	0.0071892	5420	DP1061-6	81.428	47.334			NaN	NaN	NaN	0	0	Median	0	0	0	952	191	907	1788	3676	3676		1	9606
GGSGGGGSISGGGYGSGGGSGGR	0	1	Unmodified	1740.7412	0.74116614	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.75	1.48	1	1	1		1	12.828	12.828	2	2.1573E-27	3073	DP1061-7	197.29	151.69		+	NaN	NaN	NaN	0	0	Median	18522000	18522000	0	953	20	908	1789;1790;1791;1792	3677;3678;3679;3680;3681;3682;3683;3684;3685;3686	3681		10	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	1	0	Unmodified	3222.2743	0.27429656	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.2	1.17	2	1	1	1		14.318	14.318	3	4.7532E-76	3909	DP1061-6	231.81	231.81		+	NaN	NaN	NaN	0	0	Median	93787000	93787000	0	954	19	909	1793;1794;1795;1796;1797	3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702	3687		16	9606
GGSGGSYGGGGSGGGYGGGSGSR	0	1	Unmodified	1790.7204	0.72043069	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	1.41	1	1	1	1	1	12.646	12.646	2	5.0625E-94	3213	DP1061-10	290.63	111.96		+	NaN	NaN	NaN	0	0	Median	148720000	148720000	0	955	19	910	1798;1799;1800;1801;1802	3703;3704;3705;3706;3707;3708;3709;3710;3711;3712	3703		10	9606
GGSISGGGYGSGGGK	1	0	Unmodified	1196.5422	0.54217896	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	2	1				1	12.495	12.495	2	0.011147	3051	DP1061-10	81.676	51.51		+	NaN	NaN	NaN	0	0	Median	11868000	11868000	0	956	20	911	1803;1804	3713;3714	3713		2	9606
GGSWVVIDSSINPR	0	1	Unmodified	1485.7576	0.75759147	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.15	3	1	1	1		19.315	19.315	2	3.2159E-08	9570	DP1061-6	138.76	103.05			0.81029	0.87249	2.9182	4	0	Median	154070000	83305000	70767000	957	309	912	1805;1806;1807;1808;1809;1810	3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728	3717		13	9606
GGTGFAGSGVK	1	0	Unmodified	936.46649	0.46649483	548	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		12.811	12.811	2	0.015588	3166	DP1061-9	84.213	39.52			NaN	NaN	NaN	0	0	Median	6240100	0	6240100	958	548	913	1811	3729	3729		1	9606
GGVLEPEGTVEIK	1	0	Unmodified	1326.7031	0.70309628	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.985	16.985	2	0.0024121	7005	DP1061-6	99.788	33.732			NaN	NaN	NaN	0	0	Median	7236500	0	7236500	959	34	914	1812	3730;3731	3731		2	9606
GHAGSVDSIAVDGSGTK	1	0	Unmodified	1556.7431	0.74306362	481	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	4	0				1		13.539	13.539	2	4.6947E-39	4013	DP1061-9	240.42	185.33			NaN	NaN	NaN	0	0	Median	5273700	0	5273700	960	481	915	1813	3732;3733;3734	3734		3	9606
GHENVEAAQAEYIEK	1	0	Unmodified	1686.7849	0.78492843	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		14.55	14.55	2;3	1.5364E-76	5302	DP1061-8	239.38	214.08			0.9138	0.96559	11.441	4	0	Median	1019999999.9999999	495690000	524300000	961	87	916	1814;1815;1816;1817	3735;3736;3737;3738;3739;3740;3741;3742;3743	3736		9	9606
GHLENNPALEK	1	0	Unmodified	1220.6149	0.61494998	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				2		12.517	12.517	2;3	9.164E-24	2687	DP1061-9	172.56	58.901			18.091	18.911	NaN	1	0	Median	419170000	19856000	399310000	962	90	917	1818;1819	3744;3745;3746;3747	3746		4	9606
GHNTNVGAIVFHPK	1	0	Unmodified	1489.779	0.77899561	46	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			14.441	14.441	3	1.4183E-05	5233	DP1061-8	138.31	103.3			NaN	NaN	NaN	0	0	Median	42410000	0	42410000	963	46	918	1820	3748;3749	3748		2	9606
GHTAMLHTGSWHPK	1	0	Oxidation (M)	1574.7412	0.7412299	517	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	1	0	3	0			1			12.568	12.568	3	0.0067946	2921	DP1061-8	73.927	46.922			NaN	NaN	NaN	0	0	Median	11842000	0	11842000	964	517	919	1821	3750;3751	3751	631	2	9606
GHYTEGAELVDSVLDVVR	0	1	Unmodified	1957.9745	0.97452012	265;98;328;320	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.67	0.471			1	2		21.765	21.765	2;3	9.4207E-31	14445	DP1061-9	237.41	158.21			3.8873	4.2003	0.70612	2	0	Median	62024000	11747000	50277000	965	98;265;328;320	920	1822;1823;1824	3752;3753;3754;3755;3756;3757	3757		6	9606
GHYTEGAELVDSVLDVVRK	1	1	Unmodified	2086.0695	0.069483134	265;98;328;320	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	1	4	0				1		20.658	20.658	3	3.1358E-05	12963	DP1061-9	113.14	83.56			NaN	NaN	NaN	0	0	Median	13935000	0	13935000	966	98;265;328;320	921	1825	3758;3759	3758		2	9606
GIAYIEFK	1	0	Unmodified	939.50657	0.50656873	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				18.703	18.703	2	0.012179	10100	DP1061-7	104.21	104.21			NaN	NaN	NaN	0	0	Median	29048000	0	29048000	967	134	922	1826	3760;3761	3760		2	9606
GIDYDFPSLILQK	1	0	Unmodified	1507.7922	0.79224564	478	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	4	0				1		22.122	22.122	2	0.0012213	14829	DP1061-9	107.55	67.706			NaN	NaN	NaN	0	0	Median	6904200	0	6904200	968	478	923	1827	3762;3763	3762		2	9606
GIECDIR	0	1	Unmodified	861.40145	0.40145173	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	4	0				1		14.067	14.067	2	0.048256	4522	DP1061-9	74.439	23.402			NaN	NaN	NaN	0	0	Median	33882000	0	33882000	969	182	924	1828	3764	3764		1	9606
GIFEPFGR	0	1	Unmodified	921.47085	0.47085192	337	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	3.5	0.5			1	1		19.407	19.407	2	0.020348	11511	DP1061-9	90.986	61.609			NaN	NaN	NaN	0	0	Median	17344000	0	17344000	970	337	925	1829;1830	3765;3766;3767;3768	3767		4	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	2 Oxidation (M)	2209.033	0.032979747	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			20.013	20.013	2	7.1622E-09	11165	DP1061-8	95.57	77.157			1.5221	1.6259	NaN	1	0	Median	21369000	6563500	14805000	971	209	926	1831	3769;3770	3769	258;259;260	2	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	3 Oxidation (M)	2225.0279	0.027894369	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	3	0	3	0			1			18.916	18.916	2	5.5452E-08	9809	DP1061-8	122.75	95.011			NaN	NaN	NaN	0	0	Median	19412000	0	19412000	972	209	926	1832	3771;3772;3773	3772	258;259;260	3	9606
GILIPLCESGTCTLR	0	1	Unmodified	1688.859	0.85896177	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		19.925	19.925	2	0.00017109	12062	DP1061-9	115	78.558			NaN	NaN	NaN	0	0	Median	12913000	0	12913000	973	329	927	1833	3774;3775	3774		2	9606
GISHVIVDEIHER	0	1	Unmodified	1502.7841	0.78414057	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				16.053	16.053	3	0.000919	6930	DP1061-7	101.32	72.335			NaN	NaN	NaN	0	0	Median	23943000	0	23943000	974	296	928	1834	3776;3777	3776		2	9606
GITINAAHVEYSTAAR	0	1	Unmodified	1672.8533	0.85328277	196	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		16.047	16.047	3	0.0033575	7142	DP1061-9	79.81	62.746			1.6374	1.7506	NaN	1	0	Median	23992000	7447600	16544000	975	196	929	1835	3778	3778		0	9606
GIVEFSGKPAAR	1	1	Unmodified	1230.6721	0.67207093	352	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	3	0			1			14.459	14.459	3	0.0055132	5236	DP1061-8	81.525	25.804			NaN	NaN	NaN	0	0	Median	14617000	0	14617000	976	352	930	1836	3779;3780	3779		2	9606
GIVVYTGDR	0	1	Unmodified	978.51345	0.51344502	84	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				15.457	15.457	2	0.019432	6151	DP1061-7	85.212	46.42			NaN	NaN	NaN	0	0	Median	14520000	0	14520000	977	84	931	1837	3781;3782	3781		2	9606
GKENTDSVVMQPK	2	0	Unmodified	1431.7028	0.70277871	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				12.604	12.604	2	0.0046202	2799	DP1061-7	155.26	117.75			NaN	NaN	NaN	0	0	Median	2524500	0	2524500	978	289	932	1838	3783;3784	3783		2	9606
GKGSLGSQGAKDEPEEELQK	3	0	Unmodified	2086.0178	0.017841494	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	2	4	0				1		12.991	12.991	3	0.016235	3292	DP1061-9	78.917	58.549			NaN	NaN	NaN	0	0	Median	4059700	0	4059700	979	318	933	1839	3785;3786;3787	3785		3	9606
GKPLPEYHVR	1	1	Unmodified	1194.6509	0.65094155	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					12.707	12.707	3	0.019705	2422	DP1061-6	69.276	43.23			NaN	NaN	NaN	0	0	Median	7476300	0	7476300	980	271	934	1840	3788;3789	3789		2	9606
GKQSLETICLLLAYK	2	0	Unmodified	1735.9542	0.95424237	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	4	0				1		20.598	20.598	3	0.013564	13028	DP1061-9	72.615	39.607			NaN	NaN	NaN	0	0	Median	3566600	0	3566600	981	163;233;234	935	1841	3790;3791	3790		2	9606
GLAPVQAYLHIPDIIK	1	0	Unmodified	1747.0032	0.0032414695	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.894		2	1	2		21.302	21.302	2;3	4.14E-20	13351	DP1061-7	173.19	173.19			0.82688	0.87474	9.4804	4	0	Median	251200000	136850000	114350000	982	116	936	1842;1843;1844;1845;1846	3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810	3800		19	9606
GLCAIAQAESLR	0	1	Unmodified	1287.6605	0.66051996	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	5	0					2	21.947	21.947	2	0.013118	10614	DP1061-10	97.472	53.154			NaN	NaN	NaN	0	0	Median	0	0	0	983	140	937	1847;1848	3811;3812	3811		2	9606
GLDFALLQK	1	0	Unmodified	1003.5702	0.57023162	311	Q13123	IK	Protein Red	yes	yes	0	0	0	3	0			1			19.896	19.896	2	0.02179	11161	DP1061-8	82.671	39.757			NaN	NaN	NaN	0	0	Median	7319000	0	7319000	984	311	938	1849	3813;3814	3813		2	9606
GLDIPSIK	1	0	Unmodified	841.49092	0.49091866	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				17.636	17.636	2	0.0020482	9220	DP1061-7	124.59	60.027			NaN	NaN	NaN	0	0	Median	11493000	0	11493000	985	402	939	1850	3815;3816	3816		2	9606
GLHSQNFTQALLER	0	1	Unmodified	1612.8322	0.8321534	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				17.578	17.578	2	0.00019161	9147	DP1061-7	119.21	74.649			NaN	NaN	NaN	0	0	Median	0	0	0	986	558	940	1851	3817	3817		1	9606
GLLEESSFATLFPK	1	0	Unmodified	1537.8028	0.80281033	322	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		22.633	22.633	2	7.5722E-05	15355	DP1061-9	141.88	104.53			NaN	NaN	NaN	0	0	Median	10056000	0	10056000	987	322	941	1852	3818;3819	3818		2	9606
GLLKPGLNVVLEGPK	2	0	Unmodified	1532.929	0.92901389	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	1	4	0				1		18.518	18.518	3	3.7401E-06	10276	DP1061-9	173.44	153.84			NaN	NaN	NaN	0	0	Median	13397000	0	13397000	988	462	942	1853	3820	3820		1	9606
GLPWSCSADEVQR	0	1	Unmodified	1503.6776	0.67762659	153	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	4	0				1		17.815	17.815	2	0.00077328	9383	DP1061-9	104.43	74.667			3.3287	3.5588	NaN	1	0	Median	33178000	5639100	27539000	989	153	943	1854	3821;3822;3823;3824;3825	3824		5	9606
GLQEAQYR	0	1	Unmodified	963.47739	0.47739386	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				13.322	13.322	2	0.028354	3702	DP1061-7	80.462	8.7476			NaN	NaN	NaN	0	0	Median	13101000	0	13101000	990	313	944	1855	3826	3826		1	9606
GLSEDTTEETLK	1	0	Unmodified	1321.6249	0.62490554	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			15.062	15.062	2	0.00017985	5681	DP1061-7	125.97	79.15			NaN	NaN	NaN	0	0	Median	42117000	0	42117000	991	134	945	1856;1857	3827;3828;3829	3828		3	9606
GLSEDTTEETLKESFDGSVR	1	1	Unmodified	2199.0179	0.017901073	134	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.53	0.612		17	13	2		29.534	29.534	2;3	5.5444E-70	9379	DP1061-8	274.45	222.84			19.2	19.994	NaN	1	0	Median	320830000	14734000	306090000	992	134	946	1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889	3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844;3845;3846;3847;3848;3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860;3861;3862;3863;3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878;3879;3880;3881	3861		52	9606
GLSQSALPYR	0	1	Unmodified	1090.5771	0.57710791	239	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					5	16.883	16.883	2	0.0076261	7607	DP1061-10	95.815	20.772			NaN	NaN	NaN	0	0	Median	14004000	0	14004000	993	239	947	1890;1891;1892;1893;1894	3882;3883;3884;3885;3886;3887	3885		6	9606
GLTTTGNSSLNSTSNTK	1	0	Unmodified	1681.8119	0.81187146	451	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	2	0		2				13.47	13.47	2	0.001986	3864	DP1061-7	103.97	65.395			NaN	NaN	NaN	0	0	Median	0	0	0	994	451	948	1895;1896	3888;3889	3889		2	9606
GLVGNPLPSVR	0	1	Unmodified	1107.64	0.64004252	492	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					17.419	17.419	2	0.046248	7576	DP1061-6	71.349	24.267			NaN	NaN	NaN	0	0	Median	3279300	0	3279300	995	492	949	1897	3890	3890		1	9606
GLYAAFDCTATMK	1	0	Oxidation (M)	1463.6425	0.64248664	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.67	0.943		2		1		18.004	18.004	2	2.0283E-05	9217	DP1061-7	126.39	114.85			0.97307	1.0195	12.2	3	0	Median	620290000	313670000	306620000	996	116	950	1898;1899;1900	3891;3892;3893;3894;3895	3891	153	5	9606
GLYAAFDCTATMK	1	0	Unmodified	1447.6476	0.64757201	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				18.652	18.652	2	1.465E-17	10143	DP1061-7	166.66	149.94			0.91566	0.95936	NaN	1	0	Median	80334000	40503000	39831000	997	116	950	1901	3896;3897;3898;3899;3900	3899		5	9606
GMGPGTPAGYGR	0	1	Oxidation (M)	1135.508	0.50804206	139	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	2	0		1				13.22	13.22	2	0.032207	3533	DP1061-7	72.643	42.476			NaN	NaN	NaN	0	0	Median	4780000	0	4780000	998	139	951	1902	3901	3901		1	9606
GMGTVEGGDQSNPK	1	0	Unmodified	1375.6038	0.60379294	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	0.816		1	1	1		12.552	12.552	2	1.2972E-05	2742	DP1061-7	131.09	103.83			NaN	NaN	NaN	0	0	Median	22113000	0	22113000	999	318	952	1903;1904;1905	3902;3903;3904;3905;3906;3907	3903		6	9606
GMPPGGGGEVVFSCPVR	0	1	Oxidation (M)	1717.7916	0.79161049	545	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	1	0	4	0				1		17.302	17.302	2	0.015224	8731	DP1061-9	77.644	52.791			NaN	NaN	NaN	0	0	Median	0	0	0	1000	545	953	1906	3908	3908	641	1	9606
GMSLNLEPDNVGVVVFGNDK	1	0	Oxidation (M)	2119.0256	0.025569409	144	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			20.97	20.97	2	1.8516E-06	12575	DP1061-8	93.765	76.363			0.78297	0.83633	NaN	1	0	Median	14357000	6226000	8130600	1001	144	954	1907	3909;3910	3910	190	2	9606
GMVAEEIEEEPAAGDDEELEEEAVPQDESSQK	1	0	Oxidation (M)	3504.4734	0.47335802	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					18.701	18.701	3	0.014353	9020	DP1061-6	43.103	28.727			NaN	NaN	NaN	0	0	Median	5240300	0	5240300	1002	68	955	1908	3911;3912	3911	66	2	9606
GNAGQSNYGFANSAMER	0	1	Unmodified	1772.7536	0.75364508	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.383	16.383	2	4.3799E-07	6316	DP1061-6	123.28	95.847			NaN	NaN	NaN	0	0	Median	2325700	0	2325700	1003	194	956	1909	3913	3913		1	9606
GNEGTLESINEK	1	0	Unmodified	1289.6099	0.60992418	59	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	4	0				1		14.47	14.47	2	0.01326	5095	DP1061-9	84.507	41.643			NaN	NaN	NaN	0	0	Median	4599400	0	4599400	1004	59	957	1910	3914	3914		1	9606
GNEKEDAAGTSGLGELNSR	1	1	Unmodified	1903.8872	0.88716167	378	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3	0			2			14.546	14.546	2;3	7.0058E-11	5454	DP1061-8	149.6	109.11			NaN	NaN	NaN	0	0	Median	13966000	0	13966000	1005	378	958	1911;1912	3915;3916	3916		2	9606
GNFGGSFAGSFGGAGGHAPGVAR	0	1	Unmodified	2033.9456	0.94562002	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			17.475	17.475	3	5.5675E-22	8160	DP1061-8	139.81	139.81			2.0923	2.2464	NaN	1	0	Median	43310000	16552000	26758000	1006	209	959	1913	3917;3918	3918		2	9606
GNIPTLNR	0	1	Unmodified	883.48756	0.48756462	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					14.661	14.661	1;2	0.0014526	4412	DP1061-6	111.04	50.276			0.79927	0.82253	11.281	2	0	Median	1406300000	766990000	639360000	1007	309	960	1914;1915	3919;3920;3921	3920		3	9606
GNLGAGNGNLQGPR	0	1	Unmodified	1323.6644	0.66435979	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				14.017	14.017	2	0.0017439	4563	DP1061-7	85.29	62.711			1.716	1.9308	NaN	1	0	Median	7954400	2650100	5304200	1008	180	961	1916	3922	3922		1	9606
GNLTPLTGR	0	1	Unmodified	927.51378	0.51377937	67	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		14.977	14.977	2	0.0038337	5786	DP1061-9	115.49	74.921			NaN	NaN	NaN	0	0	Median	11651000	0	11651000	1009	67	962	1917	3923;3924	3923		2	9606
GNNNVMSNYEAYKPSTGAMGDR	1	1	2 Oxidation (M)	2407.0169	0.016871991	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	2	1	2	0		1				14.59	14.59	3	0.029598	5220	DP1061-7	56.48	42.043			NaN	NaN	NaN	0	0	Median	11493000	0	11493000	1010	402	963	1918	3925;3926	3926	501;502	2	9606
GNSRPGTPSAEGGSTSSTLR	0	2	Unmodified	1917.914	0.91404512	157	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	4.4	0.8			1	1	3	12.559	12.559	3	1.8895E-12	2789	DP1061-9	154.72	114.73			NaN	NaN	NaN	0	0	Median	34496000	0	34496000	1011	157	964	1919;1920;1921;1922;1923	3927;3928;3929;3930;3931;3932;3933;3934	3934		8	9606
GNTAEGCVHETQEK	1	0	Unmodified	1558.6682	0.66818411	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0.632	1	3	1			12.403	12.403	2;3	7.7324E-08	2515	DP1061-7	190.78	165.31			NaN	NaN	NaN	0	0	Median	47013000	0	47013000	1012	466	965	1924;1925;1926;1927;1928	3935;3936;3937;3938;3939;3940;3941;3942	3939		8	9606
GNTMQQFLQK	1	0	Oxidation (M)	1209.5812	0.58120701	335	Q14320	FAM50A	Protein FAM50A	yes	yes	0	1	0	4	0				1		14.083	14.083	2	0.038776	4653	DP1061-9	71.877	36.582			NaN	NaN	NaN	0	0	Median	7246500	0	7246500	1013	335	966	1929	3943	3943		1	9606
GNVDEELSKK	2	0	Unmodified	1117.5615	0.56151742	173	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	0	1	5	0					1	12.438	12.438	2	0.013075	2920	DP1061-10	113.66	80.396			NaN	NaN	NaN	0	0	Median	35314000	0	35314000	1014	173	967	1930	3944;3945	3944		2	9606
GPASVPSVGK	1	0	Unmodified	897.49198	0.4919813	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4.5	0.5				1	1	13.365	13.365	2	0.0088293	3655	DP1061-9	92.051	35.33			NaN	NaN	NaN	0	0	Median	53211000	0	53211000	1015	318	968	1931;1932	3946;3947;3948	3948		3	9606
GPAVGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2262.1103	0.11030209	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			19.418	19.418	2;3	0.0026394	10550	DP1061-8	94.313	70.88			NaN	NaN	NaN	0	0	Median	18439000	0	18439000	1016	113	969	1933;1934	3949;3950;3951	3949		3	9606
GPCGSFDVR	0	1	Unmodified	993.43381	0.43381449	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	2	0		1				14.871	14.871	2	0.0086493	5677	DP1061-7	103.74	68.245			NaN	NaN	NaN	0	0	Median	8318400	0	8318400	1017	397	970	1935	3952;3953	3953		2	9606
GPCIIYNEDNGIIK	1	0	Unmodified	1604.7868	0.78684269	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		18.213	18.213	2	5.262599999999999E-19	9779	DP1061-9	166.66	166.66			11.306	11.819	NaN	1	0	Median	79524000	5972100	73552000	1018	162	971	1936	3954;3955;3956	3954		3	9606
GPGLGSTQGQTIALPAQGLIEFR	0	1	Unmodified	2310.2332	0.23319442	280	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	4	0				2		21.776	21.776	2	2.3761E-65	14400	DP1061-9	255.72	215.21			NaN	NaN	NaN	0	0	Median	8926700	0	8926700	1019	280	972	1937;1938	3957;3958;3959	3957		3	9606
GPGPLQER	0	1	Unmodified	852.44537	0.44536545	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				12.915	12.915	2	0.0030013	3042	DP1061-7	101.28	47.079			2.7307	3.0971	NaN	1	0	Median	12948000	3756400	9191100	1020	180	973	1939	3960;3961	3961		2	9606
GPISDALAHHLR	0	1	Unmodified	1285.6891	0.68911797	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				16.321	16.321	3	0.00077075	7460	DP1061-7	110.39	67.09			NaN	NaN	NaN	0	0	Median	7496400	0	7496400	1021	489	974	1940	3962;3963	3963		2	9606
GPPPPPGDENREMDDPSVGPK	1	1	Oxidation (M)	2202.9852	0.98516116	319	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	1	2	0		1				13.834	13.834	3	0.0060271	4320	DP1061-7	76.573	35.019			NaN	NaN	NaN	0	0	Median	0	0	0	1022	319	975	1941	3964	3964	424	1	9606
GPQPPTVSPIR	0	1	Unmodified	1147.635	0.63495714	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				15.366	15.366	2	0.0007899	6046	DP1061-7	119.62	80.364			NaN	NaN	NaN	0	0	Median	24255000	0	24255000	1023	184	976	1942	3965;3966	3965		2	9606
GPSSVEDIK	1	0	Unmodified	930.46583	0.46582612	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3	1.58	1	1		1	1	13.15	13.15	2	0.011708	3433	DP1061-9	82.279	61.654			47.562	49.718	NaN	1	0	Median	2562600000	41663000	2520900000	1024	95	977	1943;1944;1945;1946	3967;3968;3969;3970;3971;3972;3973;3974;3975	3972		9	9606
GPSSVEDIKAK	2	0	Unmodified	1129.5979	0.59790293	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		12.452	12.452	2;3	0.0011663	2663	DP1061-9	157.34	85.115			NaN	NaN	NaN	0	0	Median	58823000	0	58823000	1025	95	978	1947;1948	3976;3977;3978	3976		3	9606
GQIGAPMPGK	1	0	Unmodified	954.49569	0.49568646	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				13.998	13.998	2	0.022167	4410	DP1061-7	79.474	51.367			NaN	NaN	NaN	0	0	Median	69678000	69678000	0	1026	116	979	1949	3979	3979		1	9606
GQILMPNIGYGSNK	1	0	Oxidation (M)	1506.7501	0.75006325	257	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	0	5	0					1	19.341	19.341	2	0.054326	8647	DP1061-10	66.663	32.777			NaN	NaN	NaN	0	0	Median	4024300	0	4024300	1027	257	980	1950	3980	3980		1	9606
GQNLLQTQDHAK	1	0	Unmodified	1351.6844	0.68442653	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.17	1.07	2	2	1	1		12.741	12.741	2;3	2.6203E-31	2336	DP1061-6	245.5	192.15			NaN	NaN	NaN	0	0	Median	166070000	0	166070000	1028	182	981	1951;1952;1953;1954;1955;1956	3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991	3982		11	9606
GQSEDPGSLLSLFR	0	1	Unmodified	1504.7522	0.75217174	100	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				22.528	22.528	2	0.00084683	14905	DP1061-7	106.01	62.495			NaN	NaN	NaN	0	0	Median	3674800	0	3674800	1029	100	982	1957	3992;3993	3993		2	9606
GQVEVFALR	0	1	Unmodified	1017.5607	0.56072956	464	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	4	0				1		17.992	17.992	2	0.012124	9631	DP1061-9	94.114	51.245			NaN	NaN	NaN	0	0	Median	5005100	0	5005100	1030	464	983	1958	3994;3995	3994		2	9606
GQVGGDVNVEMDAAPGVDLSR	0	1	Oxidation (M)	2100.9746	0.97459647	7	CON__P02533;P02533;CON__Q6IFX2	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	1	0	1.5	0.5	1	1				17.641	17.641	2	2.6101E-06	7733	DP1061-6	121.45	82.773		+	NaN	NaN	NaN	0	0	Median	16837000	16837000	0	1031	7	984	1959;1960	3996;3997;3998;3999	3997	2	4	9606
GQVSESEDSITK	1	0	Unmodified	1278.5939	0.59393976	74	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	1.5	0.5	1	1				13.088	13.088	2	0.029239	3373	DP1061-7	75.566	33.375			NaN	NaN	NaN	0	0	Median	8505000	0	8505000	1032	74	985	1961;1962	4000;4001;4002	4002		3	9606
GRAPQVLVLAPTR	0	2	Unmodified	1376.8252	0.82521752	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		2				16.097	16.097	2;3	0.00092137	7041	DP1061-7	97.551	62.348			NaN	NaN	NaN	0	0	Median	56265000	0	56265000	1033	508	986	1963;1964	4003;4004;4005;4006	4003		4	9606
GRDDCGTFEDTGPLLQFDYK	1	1	Unmodified	2333.027	0.027025972	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.62	0.857		5	1	2		22.305	22.305	2;3	4.048E-15	11458	DP1061-8	181.69	160.34			NaN	NaN	NaN	0	0	Median	617670000	0	617670000	1034	339	987	1965;1966;1967;1968;1969;1970;1971;1972	4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026	4020		20	9606
GRDVESVQTPSK	1	1	Unmodified	1301.6575	0.65754307	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				12.403	12.403	3	0.00067117	2468	DP1061-7	109	76.963			NaN	NaN	NaN	0	0	Median	19739000	0	19739000	1035	182	988	1973	4027	4027		1	9606
GREDESYNISEVMSKEEILSVAK	2	1	Oxidation (M)	2628.2589	0.2588764	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	2	2	0		1				17.634	17.634	4	0.022984	9315	DP1061-7	57.981	38.259			NaN	NaN	NaN	0	0	Median	9009400	0	9009400	1036	512	989	1974	4028	4028	615	1	9606
GSAITGPVAK	1	0	Unmodified	899.50763	0.50763136	248	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	12.739	12.739	2	0.006123	3242	DP1061-10	82.75	59.397			5.9925	5.9455	NaN	1	0	Median	50277000	6744900	43532000	1037	248	990	1975	4029;4030	4029		2	9606
GSATNYITR	0	1	Unmodified	981.48796	0.48795855	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			13.699	13.699	2	0.0094826	4285	DP1061-8	101.43	72.269			NaN	NaN	NaN	0	0	Median	32055000	0	32055000	1038	29	991	1976	4031;4032	4032		2	9606
GSLGGGFSSGGFSGGSFSR	0	1	Unmodified	1706.7649	0.76486169	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.67	1.25	1		1	1		18.626	18.626	2	0.00017367	10380	DP1061-9	130.61	100.04		+	NaN	NaN	NaN	0	0	Median	72507000	72507000	0	1039	17	992	1977;1978;1979	4033;4034;4035;4036	4036		4	9606
GSLGQGTAPVLPGK	1	0	Unmodified	1280.7089	0.70885036	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.33	1.25	1	1		1		15.848	15.848	2	0.013206	5619	DP1061-6	80.69	46.303			NaN	NaN	NaN	0	0	Median	48212000	0	48212000	1040	318	993	1980;1981;1982	4037;4038;4039;4040	4037		4	9606
GSLGSQGAKDEPEEELQK	2	0	Unmodified	1900.9014	0.90141475	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	3.2	0.748		1	2	2		13.957	13.957	2;3	1.9065E-10	4571	DP1061-8	181.75	139.42			NaN	NaN	NaN	0	0	Median	83092000	0	83092000	1041	318	994	1983;1984;1985;1986;1987	4041;4042;4043;4044;4045;4046;4047;4048;4049	4042		9	9606
GSLGSQGAKDEPEEELQKGMGTVEGGDQSNPK	3	0	Oxidation (M)	3274.4896	0.48955763	318	Q13428	TCOF1	Treacle protein	yes	yes	0	1	2	4	0				3		14.952	14.952	3;4	8.3268E-08	5886	DP1061-9	90.03	72.086			NaN	NaN	NaN	0	0	Median	10761000	0	10761000	1042	318	995	1988;1989;1990	4050;4051;4052;4053	4053	421	4	9606
GSPTGGAQLLK	1	0	Unmodified	1027.5662	0.56620887	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		14.417	14.417	2	0.00018689	4922	DP1061-7	130.56	79.757			25.156	26.582	74.502	2	0	Median	1747299999.9999998	22794000	1724499999.9999998	1043	339	996	1991;1992;1993	4054;4055;4056;4057;4058;4059	4055		6	9606
GSPTGGAQLLKR	1	1	Unmodified	1183.6673	0.6673199	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.67	0.471		1	2			13.35	13.35	2;3	0.00033126	3838	DP1061-8	111.27	81.715			NaN	NaN	NaN	0	0	Median	155980000	0	155980000	1044	339	997	1994;1995;1996	4060;4061;4062;4063;4064;4065	4065		6	9606
GSQAPSLPNTSEAQK	1	0	Unmodified	1513.7372	0.73724996	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				14.285	14.285	2	0.0069681	4834	DP1061-7	86.803	54.052			NaN	NaN	NaN	0	0	Median	8076600	0	8076600	1045	313	998	1997	4066	4066		1	9606
GSSDAVSPDTFTAEVSSDAVPDVR	0	1	Unmodified	2408.0979	0.097942308	384	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	3	0			1			19.955	19.955	2	8.6052E-06	11251	DP1061-8	103.63	77.09			NaN	NaN	NaN	0	0	Median	0	0	0	1046	384	999	1998	4067	4067		1	9606
GSSFEMTDDDSAIR	0	1	Oxidation (M)	1545.6253	0.62531625	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	1	0	2	0		1				15.252	15.252	2	0.0033912	6015	DP1061-7	90.913	67.594			NaN	NaN	NaN	0	0	Median	8646600	0	8646600	1047	397	1000	1999	4068;4069	4069	496	2	9606
GSSSGGGYSSGSSSYGSGGR	0	1	Unmodified	1739.6983	0.69829827	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.75	1.48	1	1	1		1	12.691	12.691	2	1.5894E-71	2349	DP1061-6	280.5	263.93		+	NaN	NaN	NaN	0	0	Median	39771000	39771000	0	1048	20	1001	2000;2001;2002;2003	4070;4071;4072;4073;4074;4075;4076;4077	4073		8	9606
GSVLEPEGTVEIK	1	0	Unmodified	1356.7137	0.71366097	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		17.01	17.01	2	5.6845E-06	6941	DP1061-6	128.01	128.01			0.73036	0.79806	5.7591	4	0	Median	1410400000	791130000	619260000	1049	309	1002	2004;2005;2006;2007	4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091	4081		14	9606
GSYGDLGGPIITTQVTIPK	1	0	Unmodified	1916.0255	0.025493054	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			20.226	20.226	2	1.748E-11	11598	DP1061-8	144.88	99.596			NaN	NaN	NaN	0	0	Median	28527000	0	28527000	1050	232	1003	2008	4092;4093	4093		2	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	0	1	Unmodified	3311.3008	0.30084566	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.67	1.25	1		1	1		14.532	14.532	3	3.2674999999999997E-59	5391	DP1061-8	206.41	165.71		+	NaN	NaN	NaN	0	0	Median	103180000	103180000	0	1051	80	1004	2009;2010;2011	4094;4095;4096;4097;4098;4099;4100;4101;4102	4100		9	9606
GTDDFDFAGSFQGPR	0	1	Unmodified	1615.6903	0.69029976	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				20.055	20.055	2	0.00017831	11871	DP1061-7	114.71	88.196			NaN	NaN	NaN	0	0	Median	11485000	0	11485000	1052	289	1005	2012	4103;4104	4104		2	9606
GTEAGQVGEPGIPTGEAGPSCSSASDKLPR	1	1	Unmodified	2911.3618	0.36177834	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	1	4	0				2		16.344	16.344	3	4.5264E-08	7475	DP1061-9	101.51	79.668			NaN	NaN	NaN	0	0	Median	4363700	0	4363700	1053	43	1006	2013;2014	4105;4106;4107;4108	4108		4	9606
GTEASSGTEAATGLEGEEK	1	0	Unmodified	1822.8068	0.80684567	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	3	0.816		1	1	1		14.498	14.498	2	1.2397000000000001E-57	5158	DP1061-7	263.89	240.22			NaN	NaN	NaN	0	0	Median	6617200	0	6617200	1054	407	1007	2015;2016;2017	4109;4110;4111;4112	4110		4	9606
GTGEAEEEYVGPR	0	1	Unmodified	1392.6157	0.61573784	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		14.87	14.87	2	0.00079135	5581	DP1061-9	112.85	98.639			NaN	NaN	NaN	0	0	Median	13667000	0	13667000	1055	329	1008	2018	4113;4114	4114		2	9606
GTGIVSAPVPK	1	0	Unmodified	1024.5917	0.59169534	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		14.935	14.935	2	0.0074264	5641	DP1061-9	79.489	64.338			7.9398	8.2997	NaN	1	0	Median	93229000	10791000	82438000	1056	123	1009	2019	4115;4116	4116		2	9606
GTHFVQLCCQR	0	1	Unmodified	1404.6391	0.63907301	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			4	2		14.752	14.752	2;3	3.5449E-07	5295	DP1061-8	136.02	136.02			0.94264	1.0078	5.5844	5	0	Median	788810000	420070000	368740000	1057	501	1010	2020;2021;2022;2023;2024;2025	4117;4118;4119;4120;4121;4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132	4120		16	9606
GTLDPVEK	1	0	Unmodified	857.44945	0.44944778	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			13.456	13.456	1	0.045034	3845	DP1061-8	82.426	39.557			NaN	NaN	NaN	0	0	Median	5765200	0	5765200	1058	113	1011	2026	4133	4133		1	9606
GTLVQTKGTGASGSFK	2	0	Unmodified	1537.81	0.81002097	125;110;124	P16403;Q02539;P16401;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1B;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1.5;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				1		13.436	13.436	3	0.038468	3789	DP1061-9	61.165	17.783			NaN	NaN	NaN	0	0	Median	6073400	0	6073400	1059	125;110;124	1012	2027	4134	4134		1	9606
GTMTTGHNVADLVVILK	1	0	Oxidation (M)	1783.9502	0.95021962	305	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	1	0	4	0				1		18.694	18.694	3	0.021557	10555	DP1061-9	61.692	35.618			NaN	NaN	NaN	0	0	Median	8662400	0	8662400	1060	305	1013	2028	4135;4136	4135	373	2	9606
GTPLDTEVPMER	0	1	Oxidation (M)	1359.634	0.63403044	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	1.12	1	1	1	1		15.799	15.799	2	6.0273E-11	6478	DP1061-7	146.11	146.11			0.80141	0.93116	6.8054	4	0	Linear	876450000	475560000	400890000	1061	116	1014	2029;2030;2031;2032	4137;4138;4139;4140;4141;4142;4143;4144;4145	4139	154	9	9606
GTPLDTEVPMER	0	1	Unmodified	1343.6391	0.63911582	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				16.939	16.939	2	0.0007222	8145	DP1061-7	109.83	109.83			0.82655	0.85845	NaN	1	0	Median	266310000	143830000	122480000	1062	116	1014	2033	4146;4147;4148;4149	4146		4	9606
GTQGATAGASSELDASK	1	0	Unmodified	1549.722	0.72199382	70	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	3	0			1			13.462	13.462	2	8.4508E-08	4044	DP1061-8	140.33	72.622			NaN	NaN	NaN	0	0	Median	5889000	0	5889000	1063	70	1015	2034	4150;4151	4151		2	9606
GTQLLSSGSDGLVK	1	0	Unmodified	1360.7198	0.71980898	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1.5	0.5	1	1				16.883	16.883	2	0.0025553	6737	DP1061-6	94.767	59.057			NaN	NaN	NaN	0	0	Median	31301000	0	31301000	1064	303	1016	2035;2036	4152;4153;4154;4155	4152		4	9606
GTQTYSVLEGDPSENYSK	1	0	Unmodified	1973.8854	0.88543034	214	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	1.5	0.5	1	1				17.251	17.251	2	3.8458E-09	7316	DP1061-6	175.29	132.32			NaN	NaN	NaN	0	0	Median	6128100	0	6128100	1065	214	1017	2037;2038	4156;4157;4158;4159;4160	4159		5	9606
GTYLATFHQR	0	1	Unmodified	1192.5989	0.59890598	224	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		1				14.83	14.83	2	0.010337	5521	DP1061-7	90.629	48.342			NaN	NaN	NaN	0	0	Median	7795200	0	7795200	1066	224	1018	2039	4161;4162	4161		2	9606
GVEAVAIHGGKDQEER	1	1	Unmodified	1693.8384	0.83836099	533	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	1	3	0			1			12.686	12.686	3	0.0005131	3175	DP1061-8	97.223	62.169			NaN	NaN	NaN	0	0	Median	7691700	0	7691700	1067	533	1019	2040	4163;4164	4163		2	9606
GVEEEEEDGEMRE	0	1	Oxidation (M)	1552.5835	0.58351101	241	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	1	5	0					2	12.658	12.658	2	0.0005181	3297	DP1061-10	105.4	87.5			NaN	NaN	NaN	0	0	Median	1368700	0	1368700	1068	241	1020	2041;2042	4165;4166;4167	4165	300	3	9606
GVEEEEEDGEMRE	0	1	Unmodified	1536.5886	0.58859639	241	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	0	1	5	0					1	14.469	14.469	2	0.010923	4852	DP1061-10	92.538	72.777			NaN	NaN	NaN	0	0	Median	0	0	0	1069	241	1020	2043	4168	4168		1	9606
GVEICIATPGR	0	1	Unmodified	1171.6019	0.60194245	130;440	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3	0			1			17.228	17.228	2	0.0020726	7868	DP1061-8	113.62	77.227			NaN	NaN	NaN	0	0	Median	19913000	0	19913000	1070	130;440	1021	2044	4169;4170	4170		2	9606
GVFEAIVDQSPFVPEETMEEQK	1	0	Oxidation (M)	2524.1679	0.16793613	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.75	0.829		4	2	2		22.099	22.099	2;3	3.0087999999999998E-59	14550	DP1061-7	203.05	203.05			71.01	74.398	11.529	2	0	Median	914780000	8579500	906200000	1071	339	1022	2045;2046;2047;2048;2049;2050;2051;2052	4171;4172;4173;4174;4175;4176;4177;4178;4179;4180;4181;4182;4183;4184;4185;4186;4187;4188;4189;4190;4191	4173	446	21	9606
GVFEAIVDQSPFVPEETMEEQK	1	0	Unmodified	2508.173	0.17302151	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		2	2	2		22.813	22.813	2;3	3.601E-59	15209	DP1061-7	264.31	238.1			NaN	NaN	NaN	0	0	Median	103050000	0	103050000	1072	339	1022	2053;2054;2055;2056;2057;2058	4192;4193;4194;4195;4196;4197;4198;4199;4200;4201;4202;4203;4204;4205;4206;4207	4193		16	9606
GVFEAIVDQSPFVPEETMEEQKTK	2	0	Oxidation (M)	2753.3106	0.31057762	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2.5	0.5		1	1			20.828	20.828	2;3	0.0014555	12302	DP1061-8	96.848	78.292			NaN	NaN	NaN	0	0	Median	85914000	0	85914000	1073	339	1023	2059;2060	4208;4209;4210;4211;4212	4211	446	5	9606
GVFEAIVDQSPFVPEETMEEQKTK	2	0	Unmodified	2737.3157	0.315663	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.5		1	1			21.376	21.376	3	0.027533	13619	DP1061-7	54.306	23.719			NaN	NaN	NaN	0	0	Median	21062000	0	21062000	1074	339	1023	2061;2062	4213;4214	4213		2	9606
GVLMAGLYPNLIQVR	0	1	Oxidation (M)	1658.9178	0.91779728	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	1	0	2	0		1				21.032	21.032	2	0.012173	13167	DP1061-7	77.662	47.457			NaN	NaN	NaN	0	0	Median	3974000	0	3974000	1075	397	1024	2063	4215	4215	497	1	9606
GVNLDPLGK	1	0	Unmodified	911.50763	0.50763136	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				17.02	17.02	2	0.023165	8332	DP1061-7	81.191	9.4758			NaN	NaN	NaN	0	0	Median	22395000	0	22395000	1076	184	1025	2064	4216	4216		1	9606
GVSFTFGAEVVAK	1	0	Unmodified	1310.6871	0.68705229	163;233	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	4	0				2		28.099	28.099	2	0.00041145	11396	DP1061-9	117.52	117.52			NaN	NaN	NaN	0	0	Median	49453000	0	49453000	1077	163;233	1026	2065;2066	4217;4218;4219;4220	4217		4	9606
GVTFLFPIQAK	1	0	Unmodified	1219.6965	0.69649476	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	3	0.816		1	1	1		21.216	21.216	2	1.412E-06	13290	DP1061-7	133.86	133.86			29.418	30.822	NaN	1	0	Median	87589000	3121800	84467000	1078	508	1027	2067;2068;2069	4221;4222;4223;4224;4225;4226	4222		6	9606
GVTHNIALLR	0	1	Unmodified	1092.6404	0.64037687	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			15.793	15.793	3	0.0026039	6538	DP1061-8	112.71	77.046			NaN	NaN	NaN	0	0	Median	0	0	0	1079	86	1028	2070	4227	4227		1	9606
GVTNDQVDPSVDVLK	1	0	Unmodified	1584.7995	0.79951586	545	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		17.411	17.411	2	5.9887E-05	8837	DP1061-9	147.24	95.295			NaN	NaN	NaN	0	0	Median	14002000	0	14002000	1080	545	1029	2071	4228;4229	4229		2	9606
GVTYLFPIQVK	1	0	Unmodified	1263.7227	0.72270951	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				20.769	20.769	2	0.027985	12742	DP1061-7	76.478	42.291			NaN	NaN	NaN	0	0	Median	8037100	0	8037100	1081	463	1030	2072	4230	4230		1	9606
GVVMHTFGGYANSK	1	0	Oxidation (M)	1482.6925	0.69254837	391	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		14.341	14.341	3	0.0050817	5003	DP1061-9	75.764	32.003			NaN	NaN	NaN	0	0	Median	13261000	0	13261000	1082	391	1031	2073	4231;4232	4232	487	2	9606
GVVQLFNAVQK	1	0	Unmodified	1201.6819	0.68190733	553	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	4	0				1		18.97	18.97	2	0.0008596	10931	DP1061-9	119.29	49.479			NaN	NaN	NaN	0	0	Median	8679800	0	8679800	1083	553	1032	2074	4233;4234	4233		2	9606
GYAFIEFASFEDAK	1	0	Unmodified	1593.7351	0.73512469	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				22.248	22.248	2	6.6324E-05	14621	DP1061-7	147.3	113.42			NaN	NaN	NaN	0	0	Median	4452200	0	4452200	1084	134	1033	2075	4235;4236	4235		2	9606
GYAFVEFESEDVAK	1	0	Unmodified	1589.725	0.72495394	478	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	4	0				1		19.755	19.755	2	0.00045781	12002	DP1061-9	112.15	77.427			NaN	NaN	NaN	0	0	Median	9128200	0	9128200	1085	478	1034	2076	4237	4237		1	9606
GYAYTFITEDQAR	0	1	Unmodified	1533.71	0.70997257	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				18.782	18.782	2	3.591E-06	10279	DP1061-7	183.67	105.16			NaN	NaN	NaN	0	0	Median	12003000	0	12003000	1086	396	1035	2077	4238;4239;4240	4239		3	9606
GYCYVEFKEEK	2	0	Unmodified	1450.6439	0.64386684	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	2	0		1				15.757	15.757	3	0.0056486	6604	DP1061-7	83.045	53.721			NaN	NaN	NaN	0	0	Median	8098500	0	8098500	1087	347	1036	2078	4241	4241		1	9606
GYNATVLAYGQTGSGK	1	0	Unmodified	1585.7736	0.77363546	74	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	1.5	0.5	1	1				16.76	16.76	2	0.0021679	6757	DP1061-6	106.29	65.569			NaN	NaN	NaN	0	0	Median	0	0	0	1088	74	1037	2079;2080	4242;4243	4242		2	9606
GYVKDVDDGLQAAEEVGYPVMIK	2	0	Oxidation (M)	2511.2203	0.22030605	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	1	1				21.447	21.447	3	0.0081406	12698	DP1061-6	48.641	34.123			0.68622	0.75094	9.9164	2	0	Median	21942000	13255000	8687100	1089	309	1038	2081;2082	4244;4245;4246	4244	382	3	9606
HAASTVQILGAEK	1	0	Unmodified	1323.7147	0.71466402	547	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			14.273	14.273	2	0.0001407	5025	DP1061-8	165.35	123.66			NaN	NaN	NaN	0	0	Median	15678000	0	15678000	1090	547	1039	2083	4247;4248	4247		2	9606
HAMNLEAVNTYEGTHDIHALILGR	0	1	Oxidation (M)	2690.3235	0.32348276	441	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	1	0	4	0				1		18.1	18.1	4	0.00048244	9759	DP1061-9	97.57	69.158			NaN	NaN	NaN	0	0	Median	8320400	0	8320400	1091	441	1040	2084	4249	4249	528	1	9606
HAPLADQILAGNAVR	0	1	Unmodified	1544.8423	0.84232415	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				2		17.001	17.001	2;3	0.010744	8328	DP1061-9	82.171	46.629			NaN	NaN	NaN	0	0	Median	18419000	0	18419000	1092	329	1041	2085;2086	4250;4251;4252	4252		3	9606
HATAEEVEEEER	0	1	Unmodified	1427.6165	0.61646612	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		12.624	12.624	2	0.00014558	2923	DP1061-9	128.81	106.82			NaN	NaN	NaN	0	0	Median	2081000	0	2081000	1093	427	1042	2087	4253;4254	4253		2	9606
HATAEEVEEEERDR	0	2	Unmodified	1698.7445	0.74452018	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	1	4	0				1		12.843	12.843	3	4.5295E-06	3121	DP1061-9	130.44	91.402			NaN	NaN	NaN	0	0	Median	24362000	0	24362000	1094	427	1043	2088	4255;4256	4256		2	9606
HDLDLICR	0	1	Unmodified	1040.5073	0.50731378	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0				1		15.532	15.532	2	0.0023663	6326	DP1061-9	122.74	81.313			NaN	NaN	NaN	0	0	Median	551130000	0	551130000	1095	163;233;234	1044	2089	4257;4258	4257		2	9606
HELSTEYIPDPER	0	1	Unmodified	1584.742	0.74200098	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					16.208	16.208	2	0.00053924	6080	DP1061-6	161.67	55.07			NaN	NaN	NaN	0	0	Median	0	0	0	1096	340	1045	2090	4259	4259		1	9606
HFELGGDK	1	0	Unmodified	901.42938	0.42938104	443	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	0	5	0					1	13.096	13.096	2	0.050054	3743	DP1061-10	73.26	10.546			NaN	NaN	NaN	0	0	Median	4094800	0	4094800	1097	443	1046	2091	4260	4260		1	9606
HFLQMLSLENCR	0	1	Oxidation (M)	1562.7334	0.73336733	431	Q8WX94	NLRP7	NACHT, LRR and PYD domains-containing protein 7	yes	yes	0	1	0	1	0	1					15.632	15.632	2	0.0078368	5363	DP1061-6	87.639	42.776			NaN	NaN	NaN	0	0	Median	7888000	7888000	0	1098	431	1047	2092	4261;4262	4262	526	2	9606
HFSQGSALILHQR	0	1	Unmodified	1492.7899	0.78989465	127	P17028	ZNF24	Zinc finger protein 24	yes	yes	0	0	0	4	0				1		14.797	14.797	3	0.0038472	5599	DP1061-9	86.738	53.465			NaN	NaN	NaN	0	0	Median	7055400	0	7055400	1099	127	1048	2093	4263;4264	4263		2	9606
HGDVITIIDR	0	1	Unmodified	1137.6142	0.6142217	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.07	16.07	2	0.00024186	7004	DP1061-7	157.34	112.32			NaN	NaN	NaN	0	0	Median	39129000	0	39129000	1100	182	1049	2094	4265;4266	4265		2	9606
HGEEVTPEDVLSAAMYPDVFAHFK	1	0	Oxidation (M)	2704.2479	0.24791778	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	1		1		1		21.484	21.484	3	1.2124999999999999E-22	13597	DP1061-7	141.79	141.79			0.78696	0.82357	7.5414	2	0	Median	76371000	41898000	34472000	1101	116	1050	2095;2096	4267;4268;4269;4270;4271;4272;4273;4274;4275	4268	155	8	9606
HGGGGGGFGGGGFGSR	0	1	Unmodified	1319.5755	0.57554478	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.25	1.09	1	2		1		13.772	13.772	2;3	1.7338E-07	3477	DP1061-6	164.48	147.02		+	NaN	NaN	NaN	0	0	Median	57835000	57835000	0	1102	20	1051	2097;2098;2099;2100	4276;4277;4278;4279;4280	4276		5	9606
HGNALWLNER	0	1	Unmodified	1208.6051	0.60505399	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		15.933	15.933	2	2.4962E-06	6478	DP1061-8	133.13	98.881			0.9721	1.0369	2.9715	2	0	Median	93447000	44603000	48843000	1103	86	1052	2101;2102;2103;2104	4281;4282;4283;4284;4285;4286;4287;4288;4289;4290	4281		10	9606
HGSLGFLPR	0	1	Unmodified	982.53485	0.53484916	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		15.954	15.954	2	7.8018E-06	6944	DP1061-9	131.03	57.057			28.798	30.79	NaN	1	0	Median	199950000	5703000	194250000	1104	169	1053	2105	4291;4292;4293;4294	4292		4	9606
HGVESTLER	0	1	Unmodified	1026.5094	0.50942227	290	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	0	1					12.478	12.478	2	0.011266	2096	DP1061-6	96.492	57.239			NaN	NaN	NaN	0	0	Median	6606600	0	6606600	1105	290	1054	2106	4295	4295		1	9606
HHLQPENPGPGGAAPSLEQNR	0	1	Unmodified	2205.0675	0.067526074	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.6	0.917	1	4	3	2		14.294	14.294	2;3;4	7.7131E-71	4765	DP1061-7	268.5	233.2			65.62	66.587	0.80861	2	0	Median	1962299999.9999998	19292000	1942999999.9999998	1106	339	1055	2107;2108;2109;2110;2111;2112;2113;2114;2115;2116	4296;4297;4298;4299;4300;4301;4302;4303;4304;4305;4306;4307;4308;4309;4310;4311;4312;4313;4314;4315;4316;4317;4318;4319;4320;4321	4306		26	9606
HHYEQQQEDLAR	0	1	Unmodified	1552.7019	0.7018675	343;426	Q14839;Q12873;Q8TDI0	CHD4;CHD3;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5	no	no	0	0	0	1	0	1					12.511	12.511	3	0.00087108	2099	DP1061-6	108.72	72.98			NaN	NaN	NaN	0	0	Median	16523000	0	16523000	1107	343;426	1056	2117	4322;4323	4323		2	9606
HIDFSLR	0	1	Unmodified	886.4661	0.4661009	188	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	25.483	25.483	2	0.0047073	14228	DP1061-10	110.34	29.782			NaN	NaN	NaN	0	0	Median	41761000	0	41761000	1108	188	1057	2118	4324;4325	4325		2	9606
HIEIQVLGDK	1	0	Unmodified	1150.6346	0.63462279	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.268	16.268	2	5.8909E-16	6847	DP1061-8	160.53	109.47			0.95997	1.0144	0.88235	2	0	Median	163710000	89552000	74161000	1109	86	1058	2119;2120	4326;4327;4328;4329;4330;4331	4326		6	9606
HIFPASR	0	1	Unmodified	826.44497	0.44497152	335	Q14320;Q9Y247	FAM50A;FAM50B	Protein FAM50A;Protein FAM50B	yes	no	0	0	0	4	0				1		12.922	12.922	2	0.033201	3234	DP1061-9	88.643	33.878			NaN	NaN	NaN	0	0	Median	8387000	0	8387000	1110	335	1059	2121	4332	4332		1	9606
HIMGQNVADYMR	0	1	2 Oxidation (M)	1465.6442	0.64421797	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	0	4	0				2		13.444	13.444	2;3	0.0071379	3771	DP1061-9	73.435	50.857			NaN	NaN	NaN	0	0	Median	83556000	0	83556000	1111	185	1060	2122;2123	4333;4334;4335	4334	237;238	3	9606
HIMGQNVADYMR	0	1	Oxidation (M)	1449.6493	0.64930335	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	4	0				1		14.654	14.654	3	0.044566	5431	DP1061-9	47.712	16.823			NaN	NaN	NaN	0	0	Median	6437600	0	6437600	1112	185	1060	2124	4336	4336	237;238	1	9606
HIQKEDVPSER	1	1	Unmodified	1336.6735	0.67352749	8	CON__P02662			yes	yes	0	0	1	3	1		1		1		12.402	12.402	3	3.6348E-05	2564	DP1061-9	134.38	78.339		+	NaN	NaN	NaN	0	0	Median	44110000	44110000	0	1113	8	1061	2125;2126	4337;4338;4339	4339		3	
HISVLVPCFLTFPK	1	0	Unmodified	1656.9062	0.90616996	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2.5	0.5		1	1			21.591	21.591	3	0.0050836	13373	DP1061-8	82.069	44.705			NaN	NaN	NaN	0	0	Median	7624000	0	7624000	1114	555	1062	2127;2128	4340;4341;4342	4341		3	9606
HLCGDTNYAWPTAEIAVMGAK	1	0	Oxidation (M)	2320.0616	0.061637339	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			3			18.842	18.842	2;3	3.8231999999999996E-28	9804	DP1061-8	169.98	133.05			0.74124	0.79176	NaN	1	0	Median	100010000	54856000	45154000	1115	87	1063	2129;2130;2131	4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356	4347	105	14	9606
HLDDINFDVR	0	1	Unmodified	1242.5993	0.59929991	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					17.053	17.053	2	0.0051081	7121	DP1061-6	106.42	76.169			NaN	NaN	NaN	0	0	Median	6053500	0	6053500	1116	68	1064	2132	4357;4358	4358		2	9606
HLLIGVSSDR	0	1	Unmodified	1095.6037	0.60365701	161	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	5	0					1	25.138	25.138	2	0.044575	14062	DP1061-10	85.212	36.708			NaN	NaN	NaN	0	0	Median	0	0	0	1117	161	1065	2133	4359	4359		1	9606
HLLSQPLFTESQK	1	0	Unmodified	1526.8093	0.80929269	484	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				16.94	16.94	2	0.036128	8383	DP1061-7	73.499	18.96			NaN	NaN	NaN	0	0	Median	6104000	0	6104000	1118	484	1066	2134	4360	4360		1	9606
HLMQDLR	0	1	Unmodified	911.46472	0.46472069	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		13.873	13.873	2	0.033177	4339	DP1061-9	88.734	2.6479			NaN	NaN	NaN	0	0	Median	4780600	0	4780600	1119	427	1067	2135	4361	4361		1	9606
HLPEPVAIK	1	0	Unmodified	1002.5862	0.58621603	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					14.553	14.553	2	0.021993	4414	DP1061-6	82.452	33.094			NaN	NaN	NaN	0	0	Median	5886000	0	5886000	1120	68	1068	2136	4362	4362		1	9606
HMEMYADR	0	1	Unmodified	1051.4215	0.42153524	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				13.003	13.003	2	2.6155E-06	2664	DP1061-6	140.09	124.65			0.86043	0.94956	1.9911	2	0	Median	72283000	36162000	36121000	1121	309	1069	2137;2138	4363;4364;4365;4366;4367	4366		5	9606
HMFHVAWVDPEDPYK	1	0	Oxidation (M)	1885.8458	0.84575455	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1				17.968	17.968	3	0.001259	9661	DP1061-7	74.133	52.33			0.6817	0.71423	NaN	1	0	Median	20544000	14090000	6453300	1122	309	1070	2139	4368;4369	4369	387	2	9606
HNFCFMEMNTR	0	1	2 Oxidation (M)	1517.585	0.58498853	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	3	0			2			14.498	14.498	2;3	0.00036348	5259	DP1061-8	99.539	99.539			0.9305	0.98242	3.6781	2	0	Median	256410000	122350000	134060000	1123	455	1071	2140;2141	4370;4371;4372;4373;4374;4375;4376;4377	4376	537;538	8	9606
HNFCFMEMNTR	0	1	Oxidation (M)	1501.5901	0.59007391	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			3			16.168	16.168	2;3	0.014013	6796	DP1061-8	64.64	51.051			1.048	1.1393	23.038	2	0	Median	42701000	18022000	24678000	1124	455	1071	2142;2143;2144	4378;4379;4380;4381	4380	537;538	3	9606
HNLEIIK	1	0	Unmodified	865.50215	0.50215205	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					13.561	13.561	2	0.034818	3272	DP1061-6	82.452	5.17			NaN	NaN	NaN	0	0	Median	11739000	0	11739000	1125	271	1072	2145	4382;4383	4382		2	9606
HNVFGLDLKDEK	2	0	Unmodified	1413.7252	0.72522871	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	1	2	0		1				16.398	16.398	3	0.0096056	7543	DP1061-7	75.669	37.671			NaN	NaN	NaN	0	0	Median	5891200	0	5891200	1126	313	1073	2146	4384	4384		1	9606
HPENYDLATLK	1	0	Unmodified	1299.6459	0.64591575	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				15.265	15.265	2	0.0024973	6014	DP1061-7	96.342	96.342			1.2408	1.3	NaN	1	0	Median	31775000	12056000	19719000	1127	269	1074	2147	4385;4386	4385		2	9606
HPEQIFPR	0	1	Unmodified	1022.5298	0.52976379	274	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	4	0				1		18.018	18.018	2	0.046985	9670	DP1061-9	73.975	41.082			NaN	NaN	NaN	0	0	Median	24138000	0	24138000	1128	274	1075	2148	4387	4387		1	9606
HPFSFPLENQAR	0	1	Unmodified	1441.7102	0.71024735	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		2				17.334	17.334	2;3	0.00049265	8792	DP1061-7	119.75	80.971			NaN	NaN	NaN	0	0	Median	39874000	0	39874000	1129	466	1076	2149;2150	4388;4389;4390;4391	4391		4	9606
HPGSFDVVHVK	1	0	Unmodified	1220.6302	0.63020611	243	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	5	0					1	26.047	26.047	3	0.01511	14754	DP1061-10	82.494	45.909			NaN	NaN	NaN	0	0	Median	0	0	0	1130	243	1077	2151	4392	4392		1	9606
HPHDIIDDINSGAVECPAS	0	0	Unmodified	2045.9113	0.91126793	152	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	23.895	23.895	3	0.014694	12320	DP1061-10	74.141	56.003			NaN	NaN	NaN	0	0	Median	0	0	0	1131	152	1078	2152	4393	4393		1	9606
HPQPGAVELAAK	1	0	Unmodified	1216.6564	0.65642086	149	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					13.266	13.266	2	0.00017714	2975	DP1061-6	126.19	43.549			NaN	NaN	NaN	0	0	Median	4901500	0	4901500	1132	149	1079	2153	4394;4395;4396	4395		3	9606
HQACLLLQK	1	0	Unmodified	1109.6015	0.60154852	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1	0	1					14.021	14.021	2	0.010532	3782	DP1061-6	98.523	57.021			NaN	NaN	NaN	0	0	Median	8595800	0	8595800	1133	466	1080	2154	4397;4398;4399	4398		3	9606
HQDVPSQDDSKPTQR	1	1	Unmodified	1736.8078	0.80778914	510	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	1	4	0				1		12.423	12.423	3	9.912E-06	2568	DP1061-9	120.77	92.797			NaN	NaN	NaN	0	0	Median	8440200	0	8440200	1134	510	1081	2155	4400;4401	4400		2	9606
HQEGEIFDTEK	1	0	Unmodified	1331.5994	0.59935949	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		14.118	14.118	2	0.0020187	4615	DP1061-9	148.28	100.68			NaN	NaN	NaN	0	0	Median	28670000	0	28670000	1135	287	1082	2156	4402;4403	4403		2	9606
HQEGEIFDTEKEK	2	0	Unmodified	1588.7369	0.73691561	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				1		13.117	13.117	3	2.1215E-05	3442	DP1061-9	125.97	98.877			NaN	NaN	NaN	0	0	Median	36859000	0	36859000	1136	287	1083	2157	4404;4405	4404		2	9606
HQEGEIFDTEKEKYEITEQR	2	1	Unmodified	2508.1769	0.17686133	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	2	4	0				2		15.886	15.886	3;4	2.1457E-28	7208	DP1061-9	169.58	169.58			26.976	28.141	NaN	1	0	Median	208990000	5527400	203460000	1137	287	1084	2158;2159	4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417	4411		12	9606
HQGLPQEVLNENLLR	0	1	Unmodified	1758.9377	0.9376811	8	CON__P02662			yes	yes	0	0	0	3.67	0.471			1	2		18.479	18.479	2;3	7.2006E-06	10122	DP1061-9	122.1	88.904		+	NaN	NaN	NaN	0	0	Median	37153000	37153000	0	1138	8	1085	2160;2161;2162	4418;4419;4420;4421;4422;4423;4424	4421		7	
HQSFVLVGETGSGK	1	0	Unmodified	1444.731	0.73104237	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	2	0		1				15.421	15.421	2	5.3576E-05	6208	DP1061-7	151.66	97.598			NaN	NaN	NaN	0	0	Median	13684000	0	13684000	1139	45	1086	2163	4425;4426	4425		2	9606
HQVEQLSSSLK	1	0	Unmodified	1254.6568	0.65681479	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					13.432	13.432	2	0.0016549	3105	DP1061-6	115.57	64.129			NaN	NaN	NaN	0	0	Median	3128900	0	3128900	1140	346	1087	2164	4427;4428	4428		2	9606
HQVIQTVHPVEK	1	0	Unmodified	1413.7728	0.7728476	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				12.479	12.479	3	7.933E-05	2599	DP1061-7	125.36	84.117			NaN	NaN	NaN	0	0	Median	10905000	0	10905000	1141	489	1088	2165	4429;4430	4429		2	9606
HQYYNLK	1	0	Unmodified	964.47667	0.47666558	122	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	5	0					1	12.963	12.963	2	0.0046339	3550	DP1061-10	110.61	67.611			NaN	NaN	NaN	0	0	Median	2873300	0	2873300	1142	122	1089	2166	4431;4432;4433	4431		3	9606
HRPSEADEEELAR	0	2	Unmodified	1537.7121	0.71209784	35	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	1	2	0		1				12.692	12.692	3	0.0001381	2930	DP1061-7	117.48	68.854			NaN	NaN	NaN	0	0	Median	7477500	0	7477500	1143	35	1090	2167	4434;4435	4434		2	9606
HSETSATALMVAAGR	0	1	Oxidation (M)	1516.7304	0.73039044	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	1	0	1	0	1					14.241	14.241	3	0.051675	4134	DP1061-6	46.797	25.022			NaN	NaN	NaN	0	0	Median	6199700	0	6199700	1144	497	1091	2168	4436	4436		1	9606
HSGPNSADSANDGFVR	0	1	Unmodified	1629.7132	0.71316047	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				2		13.206	13.206	2;3	3.0222E-07	3509	DP1061-9	147.33	114.6			7.2235	7.723	NaN	1	0	Median	75238000	10913000	64325000	1145	213	1092	2169;2170	4437;4438;4439;4440;4441;4442;4443	4443		7	9606
HSSGIVADLSEQSLK	1	0	Unmodified	1569.7999	0.79985021	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		16.748	16.748	2	5.3248E-13	7959	DP1061-9	208.51	158.16			NaN	NaN	NaN	0	0	Median	9145500	0	9145500	1146	360	1093	2171	4444;4445;4446	4446		3	9606
HSSVYPTQEELEAVQNMVSHTER	0	1	Oxidation (M)	2686.2293	0.22930761	306	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	1	0	2	0		1				17.964	17.964	3	4.9961E-08	9599	DP1061-7	124.1	98.037			NaN	NaN	NaN	0	0	Median	7715900	0	7715900	1147	306	1094	2172	4447;4448	4447	376	2	9606
HTDEEFLK	1	0	Unmodified	1017.4767	0.47672516	486	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	4	0				1		13.526	13.526	2	0.020507	4048	DP1061-9	90.777	39.584			NaN	NaN	NaN	0	0	Median	7205100	0	7205100	1148	486	1095	2173	4449;4450	4450		2	9606
HTGPITCLQFNPK	1	0	Unmodified	1511.7555	0.75548298	391	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				2		16.227	16.227	2;3	0.0040317	7313	DP1061-9	86.288	38.576			NaN	NaN	NaN	0	0	Median	8070600	0	8070600	1149	391	1096	2174;2175	4451;4452;4453	4452		3	9606
HTGPNSPDTANDGFVR	0	1	Unmodified	1683.7601	0.76011066	153	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3.67	0.471			1	2		13.867	13.867	2;3	2.2698E-14	4266	DP1061-9	153.41	136.75			2.3816	2.5463	8.6161	2	0	Median	55317000	15641000	39676000	1150	153	1097	2176;2177;2178	4454;4455;4456;4457;4458;4459;4460;4461;4462	4457		9	9606
HTLNQIDSVK	1	0	Unmodified	1153.6091	0.60913632	16	CON__P12763			yes	yes	0	0	0	3	0			1			13.082	13.082	2	0.025195	3517	DP1061-8	77.533	29.79		+	NaN	NaN	NaN	0	0	Median	8286300	8286300	0	1151	16	1098	2179	4463;4464	4463		2	
HTPLVEFEEEESDKR	1	1	Unmodified	1843.8588	0.85882166	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.14	0.35			6	1		16.704	16.704	3	4.2089000000000005E-29	6684	DP1061-8	226.23	200.77			0.77882	0.80525	1.2923	2	0	Median	105500000	58769000	46728000	1152	455	1099	2180;2181;2182;2183;2184;2185;2186	4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478	4474		14	9606
HTPLVEFEEEESDKRESE	1	1	Unmodified	2188.976	0.97603626	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	3.25	0.433			3	1		16.235	16.235	2;3	3.6913E-31	7381	DP1061-9	183.75	183.75			0.81399	0.83562	NaN	1	0	Median	58480000	32705000	25774000	1153	455	1100	2187;2188;2189;2190	4479;4480;4481;4482;4483;4484	4484		6	9606
HVDYVADQIVTK	1	0	Unmodified	1386.7143	0.71432967	115	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	0	1					15.425	15.425	2	0.049753	5182	DP1061-6	75.652	47.881			NaN	NaN	NaN	0	0	Median	0	0	0	1154	115	1101	2191	4485	4485		1	9606
HVEFDFLIK	1	0	Unmodified	1146.6073	0.6073454	481	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	4	0				1		19.345	19.345	2	0.0010215	11382	DP1061-9	124.08	73.377			NaN	NaN	NaN	0	0	Median	8003300	0	8003300	1155	481	1102	2192	4486;4487	4486		2	9606
HVQLLGR	0	1	Unmodified	821.48717	0.48717069	398	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	yes	no	0	0	0	2	0		1				13.481	13.481	2	0.054954	3873	DP1061-7	69.39	10.729			1.2139	1.3761	NaN	1	0	Median	11402000	4129400	7273000	1156	398	1103	2193	4488	4488		1	9606
HVSPLIGR	0	1	Unmodified	877.51339	0.51338544	500	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		13.278	13.278	2	0.017068	3703	DP1061-9	82.305	58.333			2.0449	2.1863	NaN	1	0	Median	11327000	4050000	7277200	1157	500	1104	2194	4489;4490	4490		2	9606
HWPFQVINDGDKPK	2	0	Unmodified	1679.842	0.8419898	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3.2	0.4			4	1		16.989	16.989	3	0.0018124	8954	DP1061-8	98.337	62.563			NaN	NaN	NaN	0	0	Median	4523600	0	4523600	1158	108	1105	2195;2196;2197;2198;2199	4491;4492;4493;4494;4495;4496	4493		6	9606
HYFIEVNSR	0	1	Unmodified	1163.5724	0.57235688	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		15.479	15.479	2	1.2244E-09	6171	DP1061-7	147.29	98.533			0.97956	1.0165	5.2678	2	0	Median	796570000	400990000	395570000	1159	116	1106	2200;2201	4497;4498;4499;4500;4501	4498		5	9606
IAAGEKIPLSQEEITLQGHAFEAR	1	1	Unmodified	2607.3657	0.36566515	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.33	0.471			4	2		20.807	20.807	3;4	8.1333E-35	8943	DP1061-8	165.53	150.03			0.91638	0.94748	17.819	6	0	Median	271070000	139580000	131490000	1160	455	1107	2202;2203;2204;2205;2206;2207	4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518	4507		15	9606
IAATGVVLDLDK	1	0	Unmodified	1213.6918	0.69180331	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					18.486	18.486	2	0.0001041	8704	DP1061-6	140.49	85.877			NaN	NaN	NaN	0	0	Median	4753800	0	4753800	1161	341	1108	2208	4519;4520	4520		2	9606
IADGYEQAAR	0	1	Unmodified	1092.52	0.51998696	192	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			13.52	13.52	2	0.039058	4053	DP1061-8	74.165	21.482			NaN	NaN	NaN	0	0	Median	17238000	0	17238000	1162	192	1109	2209	4521	4521		1	9606
IAEEFEVELER	0	1	Unmodified	1362.6667	0.66671078	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		18.924	18.924	2	6.4637E-11	10318	DP1061-7	153.05	128.21			1.0364	1.1203	6.2977	2	0	Median	61401000	30011000	31390000	1163	116	1110	2210;2211	4522;4523;4524;4525;4526;4527	4522		6	9606
IAELSEDDQK	1	0	Unmodified	1146.5404	0.54044763	479	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	3	0			1			13.491	13.491	2	0.00016388	3990	DP1061-8	140.11	88.584			NaN	NaN	NaN	0	0	Median	31706000	0	31706000	1164	479	1111	2212	4528;4529;4530	4528		3	9606
IAEMEYSGANSIFLR	0	1	Oxidation (M)	1715.8189	0.8188711	329	Q13895	BYSL	Bystin	yes	yes	0	1	0	4	0				1		19.092	19.092	2	2.7595E-05	11015	DP1061-9	120.57	87.516			NaN	NaN	NaN	0	0	Median	17826000	0	17826000	1165	329	1112	2213	4531;4532	4532	433	2	9606
IAGFDER	0	1	Unmodified	806.39227	0.39226725	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.857	14.857	2	0.034857	4742	DP1061-6	82.305	22.011			NaN	NaN	NaN	0	0	Median	12102000	0	12102000	1166	271	1113	2214	4533	4533		1	9606
IAGQVAAANK	1	0	Unmodified	941.52943	0.52942943	168	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	12.419	12.419	2	0.003728	2923	DP1061-10	111.01	56.243			NaN	NaN	NaN	0	0	Median	6968000	0	6968000	1167	168	1114	2215	4534;4535	4534		2	9606
IAIYLSK	1	0	Unmodified	806.49019	0.49019038	492	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					16.416	16.416	2	0.042533	6257	DP1061-6	76.035	76.035			NaN	NaN	NaN	0	0	Median	3289400	0	3289400	1168	492	1115	2216	4536;4537	4536		2	9606
IALTDNALIAR	0	1	Unmodified	1169.6768	0.67682195	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	5	0					3	20.389	20.389	2	0.00022676	11326	DP1061-10	148.94	59.915			NaN	NaN	NaN	0	0	Median	69421000	0	69421000	1169	132	1116	2217;2218;2219	4538;4539;4540;4541;4542;4543;4544	4543		7	9606
IALYGLGSIPDER	0	1	Unmodified	1402.7456	0.7456298	201	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	3	0			1			20.095	20.095	2	0.047898	11430	DP1061-8	72.531	23.113			NaN	NaN	NaN	0	0	Median	0	0	0	1170	201	1117	2220	4545	4545		1	9606
IAPPETPDSK	1	0	Unmodified	1053.5342	0.53424004	523	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			13.46	13.46	2	0.030594	4002	DP1061-8	76.221	16.202			NaN	NaN	NaN	0	0	Median	6316800	0	6316800	1171	523	1118	2221	4546	4546		1	9606
IAPQYYDMSNFPQCEAK	1	0	Oxidation (M)	2076.8921	0.89211239	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2	0		1				17.35	17.35	2	0.0041383	8835	DP1061-7	90.731	66.439			NaN	NaN	NaN	0	0	Median	0	0	0	1172	45	1119	2222	4547	4547	46	1	9606
IAPYSVEIK	1	0	Unmodified	1018.5699	0.56989727	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.521	16.521	2	0.013266	6387	DP1061-6	91.853	40.066			NaN	NaN	NaN	0	0	Median	7364100	0	7364100	1173	271	1120	2223	4548;4549	4549		2	9606
IAPYVAHNFSK	1	0	Unmodified	1245.6506	0.6506072	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	2	2	2			14.517	14.517	2;3	5.4457E-07	5058	DP1061-7	132.25	132.25			0.86949	0.91099	7.9018	6	0	Median	1439300000	745500000	693830000	1174	116	1121	2224;2225;2226;2227;2228;2229	4550;4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567;4568	4557		19	9606
IASNAGSIA	0	0	Unmodified	802.41848	0.418482	248	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	15.223	15.223	1	0.03485	5320	DP1061-10	83.753	49.664			NaN	NaN	NaN	0	0	Median	0	0	0	1175	248	1122	2230	4569	4569		1	9606
IASSIVAQTAGIPTLPWSGSGLR	0	1	Unmodified	2281.243	0.24303082	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.8	1.08	6	1	2	1		23.005	23.005	2;3	7.467299999999999E-218	14472	DP1061-7	318.62	318.62			0.74204	0.79335	4.6616	7	0	Median	265020000	149520000	115510000	1176	309	1123	2231;2232;2233;2234;2235;2236;2237;2238;2239;2240	4570;4571;4572;4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599	4586		30	9606
IAVEPVNPSELPK	1	0	Unmodified	1391.766	0.76603089	349	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				17.633	17.633	2	0.011089	9180	DP1061-7	84.658	33.382			NaN	NaN	NaN	0	0	Median	8500500	0	8500500	1177	349	1124	2241	4600	4600		1	9606
IAVHPDYQGMGYGSR	0	1	Oxidation (M)	1665.7569	0.75693954	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				14.525	14.525	3	0.0003997	5134	DP1061-7	95.195	66.563			NaN	NaN	NaN	0	0	Median	60725000	0	60725000	1178	485	1125	2242	4601;4602	4601	581	2	9606
IAVHPDYQGMGYGSR	0	1	Unmodified	1649.762	0.76202492	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				15.745	15.745	3	7.1499E-05	6610	DP1061-7	115.1	87.428			NaN	NaN	NaN	0	0	Median	15701000	0	15701000	1179	485	1125	2243	4603	4603		1	9606
IAWDDEETRDGFR	0	2	Unmodified	1608.7168	0.71684887	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		17.166	17.166	2;3	0.0015177	7810	DP1061-8	79.82	51.493			1.0867	1.1551	12.48	3	0	Plateau	204250000	87103000	117140000	1180	86	1126	2244;2245;2246	4604;4605;4606;4607;4608;4609;4610;4611;4612;4613	4605		10	9606
ICCDLDVLASK	1	0	Unmodified	1292.6105	0.61045823	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.916	17.916	2	0.00022447	8625	DP1061-8	121.5	121.5			0.94569	1.0101	NaN	1	0	Median	82529000	42319000	40210000	1181	87	1127	2247	4614;4615;4616;4617	4617		4	9606
ICGDIHGQYTDLLR	0	1	Unmodified	1659.8039	0.80388973	234	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	4	0				1		17.591	17.591	3	6.2854E-06	9077	DP1061-9	129.17	101.76			NaN	NaN	NaN	0	0	Median	23317000	0	23317000	1182	234	1128	2248	4618;4619	4619		2	9606
ICGDIHGQYYDLLR	0	1	Unmodified	1721.8195	0.8195398	163;233	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.31	0.583			12	3	1	24.275	24.275	2;3	2.2512E-12	9984	DP1061-9	208.08	170.74			103.48	110.64	NaN	1	0	Median	1301300000	7216400	1294000000	1183	163;233	1129	2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264	4620;4621;4622;4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633;4634;4635;4636;4637;4638;4639;4640;4641;4642;4643;4644;4645;4646;4647;4648	4645		29	9606
IDALNENK	1	0	Unmodified	915.46616	0.46616048	12	CON__P02754			yes	yes	0	0	0	5	0					1	12.703	12.703	2	0.0024717	3290	DP1061-10	122.13	59.411		+	NaN	NaN	NaN	0	0	Median	13920000	13920000	0	1184	12	1130	2265	4649;4650	4649		2	
IDCFSEVPTSVFGEK	1	0	Unmodified	1713.792	0.79198764	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			20.243	20.243	2	0.00092524	11568	DP1061-8	102.97	64.568			NaN	NaN	NaN	0	0	Median	18161000	0	18161000	1185	31	1131	2266	4651;4652;4653	4653		3	9606
IDDFPNELEK	1	0	Unmodified	1218.5768	0.57683314	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				17.477	17.477	2	0.00042776	8887	DP1061-7	122.28	88.731			NaN	NaN	NaN	0	0	Median	22198000	0	22198000	1186	512	1132	2267	4654;4655	4655		2	9606
IDDVVNTR	0	1	Unmodified	930.47706	0.47705951	206	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			13.603	13.603	2	0.02478	4218	DP1061-8	85.161	40.44			NaN	NaN	NaN	0	0	Median	12828000	0	12828000	1187	206	1133	2268	4656	4656		1	9606
IDEELVTNSGK	1	0	Unmodified	1203.5983	0.59829686	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				14.961	14.961	2	0.006929	5665	DP1061-7	91.549	31.619			NaN	NaN	NaN	0	0	Median	18232000	0	18232000	1188	512	1134	2269	4657;4658	4658		2	9606
IDFYFDENPYFENK	1	0	Unmodified	1839.7992	0.79918151	107	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				1		22.121	22.121	2	0.0063495	14861	DP1061-9	96.067	58.128			NaN	NaN	NaN	0	0	Median	0	0	0	1189	107	1135	2270	4659	4659		1	9606
IDGGITGGLR	0	1	Unmodified	957.52434	0.52434406	426	Q8TDI0	CHD5	Chromodomain-helicase-DNA-binding protein 5	yes	yes	0	0	0	2	0		1				15.294	15.294	1	0.0010194	6418	DP1061-7	44.377	7.8204			0.8967	0.97476	NaN	1	0	Median	55608000	28282000	27326000	1190	426	1136	2271	4660	4660		0	9606
IDIIPNPQER	0	1	Unmodified	1193.6404	0.64043645	101	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2	0		1				17.406	17.406	2	0.019992	8939	DP1061-7	81.525	45.13			NaN	NaN	NaN	0	0	Median	6103700	0	6103700	1191	101	1137	2272	4661;4662	4662		2	9606
IDISNVK	1	0	Unmodified	787.44397	0.44396847	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		14.558	14.558	2	0.0020926	5271	DP1061-9	114.02	31.76			NaN	NaN	NaN	0	0	Median	0	0	0	1192	287	1138	2273	4663	4663		1	9606
IDLNLLTR	0	1	Unmodified	956.56548	0.56548059	529	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	2.5	0.5		1	1			19.369	19.369	2	0.0090247	10589	DP1061-8	109.01	44.748			NaN	NaN	NaN	0	0	Median	3240800	0	3240800	1193	529	1139	2274;2275	4664;4665	4665		2	9606
IDLTLLNR	0	1	Unmodified	956.56548	0.56548059	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					19.202	19.202	2	0.0013663	9599	DP1061-6	128.57	43.207			NaN	NaN	NaN	0	0	Median	5748100	0	5748100	1194	387	1140	2276	4666;4667;4668;4669	4669		4	9606
IDNSNTPFLPK	1	0	Unmodified	1244.6401	0.6401021	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				17.222	17.222	2	0.0025362	8606	DP1061-7	111.46	39.225			NaN	NaN	NaN	0	0	Median	10735000	0	10735000	1195	284	1141	2277	4670;4671	4670		2	9606
IDSWENAEDFLEK	1	0	Unmodified	1594.7151	0.71511753	326	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				20.906	20.906	2	0.00094686	12998	DP1061-7	110.93	78.201			NaN	NaN	NaN	0	0	Median	2922500	0	2922500	1196	326	1142	2278	4672	4672		1	9606
IDTGWLDR	0	1	Unmodified	974.48214	0.48214489	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.632	1	3	1			20.091	20.091	2	8.0613E-15	8345	DP1061-6	161.9	78.284			0.8643	0.88232	14.226	4	0	Median	1080200000	573930000	506280000	1197	309	1143	2279;2280;2281;2282;2283	4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686	4675		14	9606
IDTIEIITDR	0	1	Unmodified	1187.6398	0.63976774	137	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		18.984	18.984	2	8.5057E-05	10893	DP1061-9	136.57	85.863			NaN	NaN	NaN	0	0	Median	7128400	0	7128400	1198	137	1144	2284	4687;4688;4689	4687		3	9606
IEALGGFVSHMDCWR	0	1	Oxidation (M)	1792.8025	0.80250953	197	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	1	0	2	0		2				14.5	14.5	2	0.0031201	5828	DP1061-7	77.662	40.107			1.1941	1.3373	6.7495	2	0	Median	39612000	15677000	23935000	1199	197	1145	2285;2286	4690;4691;4692;4693;4694;4695;4696;4697	4697	249	8	9606
IEDVTPIPSDSTR	0	1	Unmodified	1428.7096	0.70963822	236	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					3	16.425	16.425	2	2.1659E-07	6115	DP1061-10	137.17	137.17			6.1332	5.9903	NaN	1	0	Median	21790000	3439300	18351000	1200	236	1146	2287;2288;2289	4698;4699;4700;4701;4702;4703	4699		6	9606
IEDVTPIPSDSTRR	0	2	Unmodified	1584.8107	0.81074925	236	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	20.77	20.77	3	0.042297	9694	DP1061-10	57.567	2.7954			NaN	NaN	NaN	0	0	Median	0	0	0	1201	236	1147	2290	4704	4704		1	9606
IEEVPELPLVVEDK	1	0	Unmodified	1607.8658	0.86580451	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		20.723	20.723	2	0.00068884	13021	DP1061-9	98.156	98.156			7.6612	8.0084	NaN	1	0	Median	46387000	6624100	39763000	1202	162	1148	2291	4705;4706	4706		2	9606
IEEVPELPLVVEDKVEGYK	2	0	Unmodified	2184.1566	0.15656681	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		20.509	20.509	2;3	1.5664E-07	12685	DP1061-9	122.29	93.681			NaN	NaN	NaN	0	0	Median	50015000	0	50015000	1203	162	1149	2292;2293	4707;4708;4709	4707		3	9606
IEEVPELPLVVEDKVEGYKK	3	0	Unmodified	2312.2515	0.25152982	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	2	4	0				2		19.208	19.208	3;4	0.0015122	11123	DP1061-9	93.029	67.142			NaN	NaN	NaN	0	0	Median	76073000	0	76073000	1204	162	1150	2294;2295	4710;4711;4712;4713	4713		4	9606
IEGDETSTEAATR	0	1	Unmodified	1378.6212	0.62121715	212	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	5	0					1	12.65	12.65	2	3.0149E-05	3236	DP1061-10	138.99	92.863			NaN	NaN	NaN	0	0	Median	2241800	0	2241800	1205	212	1151	2296	4714;4715	4714		2	9606
IEGDMIVCAAYAHELPK	1	0	Oxidation (M)	1931.9121	0.91211956	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	4	0				2		17.939	17.939	2;3	1.6575E-08	9405	DP1061-9	146.27	110.55			NaN	NaN	NaN	0	0	Median	70884000	0	70884000	1206	185	1152	2297;2298	4716;4717;4718;4719	4716	239	4	9606
IEISELNR	0	1	Unmodified	972.52401	0.52400971	80;20	CON__P35908v2;P35908;CON__P35908;P04264;CON__P04264	KRT2;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1	no	no	0	0	0	2.6	1.02	1	1	2	1		16.227	16.227	2	2.8373E-05	5884	DP1061-6	162.31	37.932		+	NaN	NaN	NaN	0	0	Median	450820000	450820000	0	1207	20;80	1153	2299;2300;2301;2302;2303	4720;4721;4722;4723;4724;4725;4726;4727;4728	4720		9	9606
IENLSNLHQLQMLELGSNR	0	1	Oxidation (M)	2224.127	0.12701479	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				2		19.007	19.007	2;3	3.1312E-08	11093	DP1061-9	131.54	90.577			NaN	NaN	NaN	0	0	Median	57658000	0	57658000	1208	360	1154	2304;2305	4729;4730	4729	473	2	9606
IENLSNLHQLQMLELGSNR	0	1	Unmodified	2208.1321	0.13210017	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		19.787	19.787	3	0.0085663	11915	DP1061-9	77.357	42.859			NaN	NaN	NaN	0	0	Median	11880000	0	11880000	1209	360	1154	2306	4731	4731		1	9606
IESIQLMMDSETGR	0	1	2 Oxidation (M)	1640.7386	0.73857187	337	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	2	0	4	0				1		16.141	16.141	2	3.9585E-05	7256	DP1061-9	161.99	123.21			NaN	NaN	NaN	0	0	Median	5844100	0	5844100	1210	337	1155	2307	4732;4733	4733	441;442	2	9606
IETIEVMEDR	0	1	Oxidation (M)	1249.586	0.58601761	208	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	4	0				1		15.409	15.409	2	0.0023333	6245	DP1061-9	113.62	77.198			NaN	NaN	NaN	0	0	Median	11050000	0	11050000	1211	208	1156	2308	4734;4735	4735	254	2	9606
IEVIEIMTDR	0	1	Oxidation (M)	1233.6275	0.6274885	103	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		17.509	17.509	2	0.0041327	8930	DP1061-9	106.18	55.475			NaN	NaN	NaN	0	0	Median	77540000	0	77540000	1212	103	1157	2309	4736;4737	4737	127	2	9606
IEVIEIMTDR	0	1	Unmodified	1217.6326	0.63257388	103	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		19.856	19.856	2	0.0035891	12150	DP1061-9	111.46	47.976			NaN	NaN	NaN	0	0	Median	11347000	0	11347000	1213	103	1157	2310	4738;4739	4739		2	9606
IEVQDTSGGTTALRPSASTQALSSSVSSSK	1	1	Unmodified	2951.4684	0.4683519	362	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	1.5	0.5	1	1				16.61	16.61	3	8.7346E-07	7879	DP1061-7	89.197	65.148			NaN	NaN	NaN	0	0	Median	0	0	0	1214	362	1158	2311;2312	4740;4741	4741		2	9606
IFAPNHVVAK	1	0	Unmodified	1094.6237	0.62366417	286	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	23.736	23.736	2	0.019233	12204	DP1061-10	82.241	34.666			NaN	NaN	NaN	0	0	Median	12306000	0	12306000	1215	286	1159	2313	4742	4742		1	9606
IFCCHGGLSPDLQSMEQIR	0	1	Oxidation (M)	2263.0184	0.018392316	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	0	3.43	0.495			4	3		18.567	18.567	2;3	1.3924E-13	8391	DP1061-9	166.9	145.46			NaN	NaN	NaN	0	0	Median	495890000	0	495890000	1216	163;233;234	1160	2314;2315;2316;2317;2318;2319;2320	4743;4744;4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761	4755	205	19	9606
IFCCHGGLSPDLQSMEQIR	0	1	Unmodified	2247.0235	0.023477694	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.25	0.433			3	1		18.887	18.887	2;3	1.3528999999999998E-50	9848	DP1061-8	246.64	208			NaN	NaN	NaN	0	0	Median	69904000	0	69904000	1217	163;233;234	1160	2321;2322;2323;2324	4762;4763;4764;4765;4766;4767;4768;4769	4766		8	9606
IFCCHGGLSPDLQSMEQIRR	0	2	Unmodified	2403.1246	0.12458872	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.67	0.471			1	2		17.755	17.755	3;4	4.96E-08	9214	DP1061-9	128.74	97.384			NaN	NaN	NaN	0	0	Median	62249000	0	62249000	1218	163;233;234	1161	2325;2326;2327	4770;4771;4772;4773;4774;4775	4772		6	9606
IFGYPVGIVGNNGVLFSESAK	1	0	Unmodified	2167.1314	0.13135511	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		22.504	22.504	2	1.229E-103	14382	DP1061-8	255.85	239.59			0.83342	0.88065	2.1472	2	0	Median	170180000	93923000	76255000	1219	501	1162	2328;2329	4776;4777;4778;4779;4780;4781;4782;4783;4784;4785	4777		10	9606
IFGYPVGIVGNNGVLFSESAKK	2	0	Unmodified	2295.2263	0.22631813	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.841	20.841	3	5.9843E-17	12322	DP1061-8	138.75	138.75			0.82077	0.93687	NaN	1	0	Median	16626000	9996300	6630200	1220	501	1163	2330	4786;4787;4788;4789	4786		4	9606
IFQGSFGGPTLYENPHYQSPNMHR	0	1	Oxidation (M)	2792.2765	0.27653257	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	1	0	4	0				1		17.411	17.411	4	0.00028505	8814	DP1061-9	101.71	87.472			NaN	NaN	NaN	0	0	Median	18965000	0	18965000	1221	427	1164	2331	4790;4791	4790	524	2	9606
IFVGGIKEDTEEYNLR	1	1	Unmodified	1881.9472	0.94724273	208	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		17.78	17.78	3	2.2363E-05	9349	DP1061-9	114.21	62.32			NaN	NaN	NaN	0	0	Median	9490200	0	9490200	1222	208	1165	2332	4792;4793	4793		2	9606
IFVGGLSPDTPEEK	1	0	Unmodified	1487.7508	0.75077476	330	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		17.76	17.76	2	0.0026012	9225	DP1061-9	94.465	36.876			NaN	NaN	NaN	0	0	Median	5773400	0	5773400	1223	330	1166	2333	4794	4794		1	9606
IFVNSNTDVAPFLR	0	1	Unmodified	1591.8358	0.83584179	448	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	2	0		1				20.408	20.408	2	2.4843E-07	12336	DP1061-7	182.64	130.06			NaN	NaN	NaN	0	0	Median	8169900	0	8169900	1224	448	1167	2334	4795;4796;4797	4796		3	9606
IGEEQSPEDAEDGPPELLFIHGGHTAK	1	0	Unmodified	2872.3515	0.35153123	299	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	4	0				1		18.336	18.336	4	0.01018	10079	DP1061-9	53.957	23.958			NaN	NaN	NaN	0	0	Median	10619000	0	10619000	1225	299	1168	2335	4798;4799;4800	4799		3	9606
IGGIGTVPVGR	0	1	Unmodified	1024.6029	0.60292873	263	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.5	1.5	1			1		16.196	16.196	2	1.5084E-06	7193	DP1061-9	133.23	61.733			2.1428	2.3704	1.3695	2	0	Median	79977000	27152000	52825000	1226	263	1169	2336;2337	4801;4802;4803;4804;4805;4806;4807;4808;4809	4808		9	9606
IGGVQQDTILAEGLHFR	0	1	Unmodified	1852.9795	0.97954591	458	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		19.594	19.594	3	4.5166E-11	11646	DP1061-9	129.29	129.29			1.5463	1.6533	NaN	1	0	Median	15379000	7189200	8189400	1227	458	1170	2338	4810	4810		1	9606
IGLAEEIR	0	1	Unmodified	899.50763	0.50763136	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				16.377	16.377	2	0.00027526	6122	DP1061-6	124.59	18.179			0.86135	0.85067	7.7092	2	0	Median	2191900000	1158900000	1032999999.9999999	1228	309	1171	2339;2340	4811;4812;4813;4814;4815;4816;4817;4818	4814		8	9606
IGPLGLSPK	1	0	Unmodified	880.5382	0.53820321	152	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					2	19.363	19.363	2	0.015216	9747	DP1061-10	89.752	5.5085			NaN	NaN	NaN	0	0	Median	31952000	0	31952000	1229	152	1172	2341;2342	4819;4820;4821;4822	4822		4	9606
IGPYQPNVPVGIDYVIPK	1	0	Unmodified	1968.072	0.072049316	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				21.303	21.303	2	1.3235E-06	13420	DP1061-7	104.41	104.41			2.5631	2.6855	NaN	1	0	Median	12674000	3547900	9125800	1230	180	1173	2343	4823;4824	4824		2	9606
IGQGYLIK	1	0	Unmodified	890.52255	0.52255314	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2.5	1.5	1			1		15.955	15.955	2	3.7638E-05	5755	DP1061-6	143.02	73.636			30.11	31.475	NaN	1	0	Median	205320000	5282000	200040000	1231	169	1174	2344;2345	4825;4826;4827;4828	4826		4	9606
IGQGYLIKDGK	2	0	Unmodified	1190.6659	0.66592292	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				2		14.43	14.43	2;3	0.0014979	5161	DP1061-9	100.88	77.5			NaN	NaN	NaN	0	0	Median	18286000	0	18286000	1232	169	1175	2346;2347	4829;4830	4830		2	9606
IGQTIGYQIR	0	1	Unmodified	1147.635	0.63495714	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1	0	1					16.439	16.439	2	0.0050463	6349	DP1061-6	106.68	60.293			NaN	NaN	NaN	0	0	Median	8817500	0	8817500	1233	497	1176	2348	4831;4832	4832		2	9606
IGQTKPVVVYR	1	1	Unmodified	1258.7398	0.73975656	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				13.802	13.802	3	0.0056486	4198	DP1061-7	83.045	58.19			NaN	NaN	NaN	0	0	Median	80220000	0	80220000	1234	512	1177	2349	4833;4834	4834		2	9606
IGSFGPQEDLLFLR	0	1	Unmodified	1590.8406	0.84059282	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	2	1	1	1		22.727	22.727	2	1.23E-48	14767	DP1061-7	211.64	176.1			0.83253	0.85529	10.768	5	0	Plateau	570640000	309510000	261130000	1235	309	1178	2350;2351;2352;2353;2354	4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850;4851;4852;4853;4854;4855;4856;4857;4858;4859;4860;4861;4862	4852		28	9606
IGVPSATEIIK	1	0	Unmodified	1126.6598	0.6597749	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				17.728	17.728	2	0.021162	9219	DP1061-7	79.489	31.62			NaN	NaN	NaN	0	0	Median	60385000	0	60385000	1236	508	1179	2355	4863	4863		1	9606
IHAFVQDTTLSEPR	0	1	Unmodified	1612.8209	0.82092001	413	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				16.183	16.183	3	0.0018799	7198	DP1061-7	90.689	58.359			NaN	NaN	NaN	0	0	Median	27203000	0	27203000	1237	413	1180	2356	4864;4865	4865		2	9606
IHFPLATYAPVISAEK	1	0	Unmodified	1755.956	0.95595693	264;394;465	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.67	0.471			1	2		19.725	19.725	2;3	2.375E-06	11818	DP1061-9	120.03	120.03			3.0638	3.245	8.0547	3	0	Plateau	208290000	54103000	154190000	1238	264;394;465	1181	2357;2358;2359	4866;4867;4868;4869;4870;4871;4872;4873;4874;4875;4876;4877;4878;4879;4880	4876		15	9606
IHNANPELTDGQIQAMLR	0	1	Oxidation (M)	2036.0109	0.010922397	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.92	1.14	7	2	2	2		16.656	16.656	2;3	1.1624E-41	7598	DP1061-7	188.16	188.16			0.77822	0.85545	9.2307	7	0	Median	337440000	181050000	156390000	1239	309	1182	2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372	4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900;4901;4902;4903;4904;4905;4906	4893	388	26	9606
IHNANPELTDGQIQAMLR	0	1	Unmodified	2020.016	0.016007775	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	1.3	3			1		20.042	20.042	2;3	2.5116E-05	11879	DP1061-6	86.222	86.222			0.76716	0.85138	5.9701	2	0	Median	29172000	16700000	12471000	1240	309	1182	2373;2374;2375;2376	4907;4908;4909;4910;4911	4907		4	9606
IIAPPER	0	1	Unmodified	794.46504	0.46503826	261;244;372	P63267;P68133;P68032;P62736;P63261;P60709;Q562R1	ACTG2;ACTA1;ACTC1;ACTA2;ACTG1;ACTB;ACTBL2	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2	no	no	0	0	0	4	0				1		13.626	13.626	2	0.0035349	4072	DP1061-9	114.72	25.047			NaN	NaN	NaN	0	0	Median	11014000	0	11014000	1241	244;261;372	1183	2377	4912;4913	4913		2	9606
IIDVVYNASNNELVR	0	1	Unmodified	1717.8999	0.89989861	235	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					13	23.698	23.698	2;3	5.074300000000001E-35	11638	DP1061-10	248.98	198.69			NaN	NaN	NaN	0	0	Median	103680000	0	103680000	1242	235	1184	2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388;2389;2390	4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932	4918		19	9606
IIEDQQESLNK	1	0	Unmodified	1315.662	0.66195975	91	P05455	SSB	Lupus La protein	yes	yes	0	0	0	4	0				1		13.842	13.842	2	0.0021588	4337	DP1061-9	152.11	80.42			NaN	NaN	NaN	0	0	Median	10705000	0	10705000	1243	91	1185	2391	4933;4934	4934		2	9606
IIEEAPAPGIK	1	0	Unmodified	1136.6441	0.64412484	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		15.499	15.499	2	7.6718E-07	6192	DP1061-9	138.06	138.06			0.73194	0.77343	6.1899	2	0	Median	261360000	144790000	116580000	1244	455	1186	2392;2393;2394	4935;4936;4937;4938;4939;4940;4941;4942;4943;4944;4945;4946;4947	4945		13	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Oxidation (M)	2670.3033	0.30332417	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.29	0.7	6		1			20.204	20.204	3	6.2683E-18	11991	DP1061-6	115.39	115.39			0.74011	0.82731	9.0164	3	0	Median	197360000	115630000	81730000	1245	309	1187	2395;2396;2397;2398;2399;2400;2401	4948;4949;4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960;4961;4962;4963;4964;4965;4966;4967	4954	389	20	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Unmodified	2654.3084	0.30840955	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					22.296	22.296	3	8.3578E-07	10748	DP1061-6	83.905	67.467			0.65333	0.73029	14.911	2	0	Median	62390000	36768000	25622000	1246	309	1187	2402;2403;2404	4968;4969;4970;4971;4972;4973;4974;4975	4968		8	9606
IIEFVPTK	1	0	Unmodified	945.55352	0.55351892	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		17.336	17.336	2	2.6931E-09	7302	DP1061-6	143.11	48.944			0.78923	0.83491	5.4219	4	0	Median	1778299999.9999998	968800000	809470000	1247	309	1188	2405;2406;2407;2408	4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989	4979		14	9606
IIGATDSSGELMFLMK	1	0	2 Oxidation (M)	1743.8423	0.84230866	276	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	yes	no	0	2	0	5	0					2	22.93	22.93	2	0.003306	11536	DP1061-10	91.123	60.984			NaN	NaN	NaN	0	0	Median	0	0	0	1248	276	1189	2409;2410	4990;4991	4991	349;350	2	9606
IIKPLQYQSTVASGTVAR	1	1	Unmodified	1931.084	0.084010986	326	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	1	2	0		1				16.35	16.35	3	0.052007	7374	DP1061-7	57.173	27.04			NaN	NaN	NaN	0	0	Median	9443400	0	9443400	1249	326	1190	2411	4992	4992		1	9606
IILDLISESPIK	1	0	Unmodified	1339.7963	0.79626839	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			21.576	21.576	2	0.00069198	13250	DP1061-8	156.83	78.563			NaN	NaN	NaN	0	0	Median	37904000	0	37904000	1250	232	1191	2412	4993;4994	4993		2	9606
IINDNATYCR	0	1	Unmodified	1238.5714	0.5713706	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	4	0				1		13.928	13.928	2	0.01805	4469	DP1061-9	101.64	44.466			NaN	NaN	NaN	0	0	Median	0	0	0	1251	31	1192	2413	4995	4995		1	9606
IINEPTAAAIAYGLDK	1	0	Unmodified	1658.8879	0.88793694	113;112	P11142;P54652;P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	no	no	0	0	0	3	0			1			19.774	19.774	2	0.00010387	11317	DP1061-8	110.15	67.907			NaN	NaN	NaN	0	0	Median	38555000	0	38555000	1252	113;112	1193	2414	4996;4997;4998	4998		3	9606
IINEPTAAAIAYGLDKK	2	0	Unmodified	1786.9829	0.98289996	113	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			8			21.051	21.051	2;3	0.0015773	9085	DP1061-8	86.8	63.319			NaN	NaN	NaN	0	0	Median	82475000	0	82475000	1253	113	1194	2415;2416;2417;2418;2419;2420;2421;2422	4999;5000;5001;5002;5003;5004;5005;5006;5007;5008	4999		10	9606
IINEPTAAAIAYGLDR	0	1	Unmodified	1686.8941	0.89408495	108;128	P17066;P0DMV9;P0DMV8	HSPA6;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.06	0.416		1	14	2		26.098	26.098	2;3	5.0745000000000003E-20	11215	DP1061-8	164.64	63.763			7.8086	8.3126	121.74	4	0	Median	815940000	62755000	753190000	1254	128;108	1195	2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437;2438;2439	5009;5010;5011;5012;5013;5014;5015;5016;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035	5011		27	9606
IIPPQPMEGLGFLDALNSAPVPGIK	1	0	Oxidation (M)	2589.3876	0.38764615	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2	0		2				23.449	23.449	2;3	0.00028355	16060	DP1061-7	105.28	78.144			NaN	NaN	NaN	0	0	Median	10888000	0	10888000	1255	454	1196	2440;2441	5036;5037;5038;5039;5040;5041;5042	5041	534	7	9606
IIQCHGSFATASCLICK	1	0	Unmodified	1964.9271	0.92705811	446	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	0	0	2	0		1				17.011	17.011	3	0.0056187	8410	DP1061-7	80.545	45.674			NaN	NaN	NaN	0	0	Median	7148200	0	7148200	1256	446	1197	2442	5043	5043		1	9606
IIQLLDDYPK	1	0	Unmodified	1216.6703	0.67033959	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				2		19.36	19.36	2	5.2865E-05	11251	DP1061-9	127.3	78.24			18.62	19.464	NaN	1	0	Median	194030000	10304000	183730000	1257	90	1198	2443;2444	5044;5045;5046;5047;5048	5044		5	9606
IIQQAGQVWFPDSAFK	1	0	Unmodified	1833.9414	0.94136949	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.18	0.617	31	1	1	1		29.753	29.753	2;3	1.3386E-78	12273	DP1061-6	244.73	244.73			0.80382	0.88905	11.153	16	0	Median	640070000	344970000	295100000	1258	309	1199	2445;2446;2447;2448;2449;2450;2451;2452;2453;2454;2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478	5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063;5064;5065;5066;5067;5068;5069;5070;5071;5072;5073;5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096;5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124	5057		75	9606
IIQQAGQVWFPDSAYK	1	0	Unmodified	1849.9363	0.93628412	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	3					20.929	20.929	2	3.824E-06	11878	DP1061-6	114.86	114.86			0.76151	0.85123	8.2639	2	0	Median	21393000	13055000	8338000	1259	34	1200	2479;2480;2481	5125;5126;5127;5128;5129	5125		4	9606
IITHPNFNGNTLDNDIMLIK	1	0	Oxidation (M)	2298.1678	0.16781697	6	CON__P00761			yes	yes	0	1	0	2.6	1.3	9	12	11	2	6	28.863	28.863	2;3	4.4971E-16	11421	DP1061-9	182.7	162.93		+	NaN	NaN	NaN	0	0	Median	2297400000	2297400000	0	1260	6	1201	2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521	5130;5131;5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145;5146;5147;5148;5149;5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166;5167;5168;5169;5170;5171;5172;5173;5174;5175;5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198	5195	1	69	
IITHPNFNGNTLDNDIMLIK	1	0	Unmodified	2282.1729	0.17290235	6	CON__P00761			yes	yes	0	0	0	3	0.894		2	1	2		20.052	20.052	2;3	9.282499999999999E-46	12203	DP1061-9	222.45	202.22		+	NaN	NaN	NaN	0	0	Median	873080000	873080000	0	1261	6	1201	2522;2523;2524;2525;2526	5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209;5210;5211;5212;5213	5211		15	
IITITGTQDQIQNAQYLLQNSVK	1	0	Unmodified	2588.381	0.38098087	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			21.918	21.918	2	1.4625E-79	13639	DP1061-8	278.2	244.41			NaN	NaN	NaN	0	0	Median	22849000	0	22849000	1262	232	1202	2527	5214;5215;5216	5214		3	9606
IITLAGPTNAIFK	1	0	Unmodified	1357.7969	0.79693709	354	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		20.187	20.187	2	0.00015087	12429	DP1061-9	175.65	122.56			NaN	NaN	NaN	0	0	Median	18643000	0	18643000	1263	354	1203	2528	5217;5218	5218		2	9606
IITLTGPTNAIFK	1	0	Unmodified	1387.8075	0.80750177	353	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		20.112	20.112	2	2.2428E-07	12330	DP1061-9	136.96	75.28			6.5663	6.8639	NaN	1	0	Median	17197000	2867100	14330000	1264	353	1204	2529	5219;5220	5220		2	9606
IKEWYEK	2	0	Unmodified	994.51238	0.51238239	17	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1	0	1					14.322	14.322	2	0.0097561	4052	DP1061-6	123.69	79.573		+	NaN	NaN	NaN	0	0	Median	33190000	33190000	0	1265	17	1205	2530	5221	5221		1	9606
IKFEMEQNLR	1	1	Oxidation (M)	1322.6653	0.66527099	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2	1	1		1			14.514	14.514	3	0.0030846	4241	DP1061-6	103.26	75.078		+	NaN	NaN	NaN	0	0	Median	127340000	127340000	0	1266	19	1206	2531;2532	5222;5223;5224	5223	11	3	9606
IKYPENFFLLR	1	1	Unmodified	1438.7973	0.79727144	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.33	0.471			4	2		22.121	22.121	2;3	2.1431E-09	11171	DP1061-8	196.44	152.07			NaN	NaN	NaN	0	0	Median	744300000	0	744300000	1267	163;233;234	1207	2533;2534;2535;2536;2537;2538	5225;5226;5227;5228;5229;5230;5231;5232;5233;5234;5235;5236	5226		12	9606
ILAHNNFVGR	0	1	Unmodified	1139.62	0.61997578	523;27	Q9NZI8;O00425	IGF2BP1;IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3	no	no	0	0	0	3	0			1			14.015	14.015	2	0.034746	4789	DP1061-8	75.213	43.342			NaN	NaN	NaN	0	0	Median	5194800	0	5194800	1268	523;27	1208	2539	5237	5237		1	9606
ILDDTEDTVVSQR	0	1	Unmodified	1489.726	0.72601657	178	P42696	RBM34	RNA-binding protein 34	yes	yes	0	0	0	4	0				2		16.119	16.119	2	0.00047594	7118	DP1061-9	118.28	63.556			NaN	NaN	NaN	0	0	Median	0	0	0	1269	178	1209	2540;2541	5238;5239	5238		2	9606
ILDIVPPTFSALCPANPTCIYK	1	0	Unmodified	2489.2698	0.2698392	300	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	3	0			1			23.169	23.169	2	0.0026941	15310	DP1061-8	85.909	48.543			NaN	NaN	NaN	0	0	Median	0	0	0	1270	300	1210	2542	5240	5240		1	9606
ILDMCCAPGGK	1	0	Oxidation (M)	1236.5301	0.53009941	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	1	0	2	0		1				13.777	13.777	2	0.0085447	4240	DP1061-7	88.37	60.628			NaN	NaN	NaN	0	0	Median	11730000	0	11730000	1271	184	1211	2543	5241;5242	5242	236	2	9606
ILDMGFADTMNAVIENLPK	1	0	2 Oxidation (M)	2123.0279	0.027877595	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	2	0	2	0		1				21.124	21.124	2	0.052276	13261	DP1061-7	58.32	15.511			NaN	NaN	NaN	0	0	Median	0	0	0	1272	313	1212	2544	5243	5243		1	9606
ILDPEGLALGAVIASSK	1	0	Unmodified	1652.9349	0.93488713	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	4	0				1		22.396	22.396	2	1.6911E-07	15179	DP1061-9	131.66	89.328			NaN	NaN	NaN	0	0	Median	4885100	0	4885100	1273	407	1213	2545	5244;5245;5246;5247	5247		4	9606
ILDSVGIEADDDRLNK	1	1	Unmodified	1771.8952	0.89520716	89	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	1	5	0					4	23.957	23.957	2;3	4.3112E-28	12810	DP1061-10	225.15	193.3			NaN	NaN	NaN	0	0	Median	47228000	0	47228000	1274	89	1214	2546;2547;2548;2549	5248;5249;5250;5251;5252;5253;5254	5250		7	9606
ILENSEDSSPECLF	0	0	Unmodified	1638.7083	0.70831759	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				21.752	21.752	2	1.8217E-05	13929	DP1061-7	125.68	98.201			NaN	NaN	NaN	0	0	Median	0	0	0	1275	512	1215	2550	5255;5256	5255		2	9606
ILFFNDK	1	0	Unmodified	895.48035	0.48035398	151	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	yes	yes	0	0	0	4	0				1		19.116	19.116	2	0.0019504	11140	DP1061-9	120.65	62.834			NaN	NaN	NaN	0	0	Median	3342100	0	3342100	1276	151	1216	2551	5257;5258	5258		2	9606
ILGADTSVDLEETGR	0	1	Unmodified	1574.7788	0.77878042	144	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			4			17.906	17.906	2	8.1915E-06	8828	DP1061-8	125.28	72.705			NaN	NaN	NaN	0	0	Median	14984000	0	14984000	1277	144	1217	2552;2553;2554;2555	5259;5260;5261;5262;5263;5264	5261		6	9606
ILGENEEEEDLAESGR	0	1	Unmodified	1788.8014	0.80136636	557	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	2	0		1				17.081	17.081	2	7.140099999999999E-39	8429	DP1061-7	241.31	206.62			NaN	NaN	NaN	0	0	Median	14664000	0	14664000	1278	557	1218	2556	5265;5266	5265		2	9606
ILGPGLNK	1	0	Unmodified	810.49634	0.49633839	256	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	14.66	14.66	2	0.021347	4911	DP1061-10	89.673	14.842			NaN	NaN	NaN	0	0	Median	42297000	0	42297000	1279	256	1219	2557	5267;5268;5269	5267		3	9606
ILIFSSR	0	1	Unmodified	834.49634	0.49633839	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		17.859	17.859	2	0.0046339	9357	DP1061-9	110.61	28.349			NaN	NaN	NaN	0	0	Median	39810000	0	39810000	1280	427	1220	2558	5270;5271	5271		2	9606
ILLTQENPFFR	0	1	Unmodified	1376.7452	0.74523587	298	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				21.028	21.028	2	0.0049682	13205	DP1061-7	98.033	50.43			NaN	NaN	NaN	0	0	Median	8326100	0	8326100	1281	298	1221	2559	5272	5272		1	9606
ILMEHIHK	1	0	Oxidation (M)	1035.5535	0.55353569	278	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	1	0	5	0					1	24.994	24.994	2	0.0054864	13653	DP1061-10	113.7	60.344			NaN	NaN	NaN	0	0	Median	17436000	0	17436000	1282	278	1222	2560	5273;5274	5273	351	2	9606
ILNVPQELYEK	1	0	Unmodified	1344.7289	0.7289171	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	0.764		4	1	1		20.151	20.151	2	7.8394E-07	10256	DP1061-9	137.95	117.65			0.80409	0.85064	17.458	4	0	Median	139200000	74592000	64612000	1283	309	1223	2561;2562;2563;2564;2565;2566	5275;5276;5277;5278;5279;5280;5281;5282;5283;5284;5285;5286;5287;5288;5289;5290;5291	5291		17	9606
ILPTLEAVAALGNK	1	0	Unmodified	1408.829	0.8289655	305	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		20.931	20.931	2	0.0024465	13330	DP1061-9	95.483	67.839			NaN	NaN	NaN	0	0	Median	15688000	0	15688000	1284	305	1224	2567	5292;5293	5293		2	9606
ILQDDVACDIIK	1	0	Unmodified	1401.7174	0.71736614	322	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		18.476	18.476	2	0.0036876	10223	DP1061-9	97.813	37.295			NaN	NaN	NaN	0	0	Median	12139000	0	12139000	1285	322	1225	2568	5294;5295	5295		2	9606
ILQNEPLPER	0	1	Unmodified	1207.6561	0.65608651	79	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	4	0				1		15.378	15.378	2	0.0081636	6241	DP1061-9	93.551	47.871			NaN	NaN	NaN	0	0	Median	5617900	0	5617900	1286	79	1226	2569	5296;5297	5297		2	9606
ILSTMDSPST	0	0	Unmodified	1050.4903	0.49032632	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.577	16.577	1	0.04081	6423	DP1061-6	77.741	39.58			NaN	NaN	NaN	0	0	Median	0	0	0	1287	309	1227	2570	5298	5298		1	9606
ILSTMDSPST	0	0	Oxidation (M)	1066.4852	0.48524094	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	3	0			1			15.118	15.118	1	0.00042752	6072	DP1061-8	143.12	120.63			NaN	NaN	NaN	0	0	Median	0	0	0	1288	309	1227	2571	5299	5299	390	1	9606
ILTFDQLALDSPK	1	0	Unmodified	1459.7922	0.79224564	294	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	4.88	0.331				1	7	24.72	24.72	2	8.1318E-05	14874	DP1061-10	138.22	63.299			NaN	NaN	NaN	0	0	Median	170910000	0	170910000	1289	294	1228	2572;2573;2574;2575;2576;2577;2578;2579	5300;5301;5302;5303;5304;5305;5306;5307;5308;5309;5310	5303		11	9606
ILVGHALHNDLK	1	0	Unmodified	1328.7565	0.75646926	483	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			14.31	14.31	3	0.040386	5149	DP1061-8	61.233	18.758			NaN	NaN	NaN	0	0	Median	10144000	0	10144000	1290	483	1229	2580	5311	5311		1	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Oxidation (M)	2170.1052	0.10521671	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.2	0.4			4	1		19.492	19.492	2;3	1.1087E-37	10613	DP1061-8	185.86	185.86			0.80825	0.86414	10.166	3	0	Median	235710000	129030000	106680000	1291	87	1230	2581;2582;2583;2584;2585	5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331	5315	106	20	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Unmodified	2154.1103	0.11030209	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			20.324	20.324	2;3	6.9209E-37	11636	DP1061-8	181.81	149.25			1.0806	1.1613	21.78	2	0	Median	99914000	51161000	48753000	1292	87	1230	2586;2587	5332;5333;5334;5335;5336;5337;5338	5335		7	9606
IMGIPEEEQMGLLR	0	1	2 Oxidation (M)	1646.8008	0.80077819	158	P35579	MYH9	Myosin-9	yes	yes	0	2	0	1	0	1					18.084	18.084	2	0.017589	8302	DP1061-6	71.889	34.777			NaN	NaN	NaN	0	0	Median	0	0	0	1293	158	1231	2588	5339	5339	199;200	1	9606
IMGIPEEEQMGLLR	0	1	Oxidation (M)	1630.8059	0.80586357	158	P35579	MYH9	Myosin-9	yes	yes	0	1	0	3	0			1			18.768	18.768	3	0.04552	9782	DP1061-8	49.12	15.019			NaN	NaN	NaN	0	0	Median	29315000	0	29315000	1294	158	1231	2589	5340	5340	199;200	1	9606
IMIMTDQDQDGSHIK	1	0	2 Oxidation (M)	1762.7866	0.78658469	115	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	yes	no	0	2	0	1	0	1					13.937	13.937	3	2.4394E-05	3658	DP1061-6	116.79	89.446			NaN	NaN	NaN	0	0	Median	5158400	0	5158400	1295	115	1232	2590	5341;5342	5342	142;143	2	9606
IMLPWDPTGK	1	0	Oxidation (M)	1172.59	0.58998078	140	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	5	0					2	24.028	24.028	2	0.01963	12718	DP1061-10	85.862	33.146			NaN	NaN	NaN	0	0	Median	0	0	0	1296	140	1233	2591;2592	5343;5344	5343	188	2	9606
IMLSNPHSSVTLYSETGR	0	1	Oxidation (M)	2006.9731	0.97313991	567				yes	yes	0	1	0	3	0			1			24.678	24.678	2	0.029151	17637	DP1061-8	56.205	56.205	+		0.73515	0.78283	NaN	1	0	Median	72038000	40741000	31297000	1297	567	1234	2593	5345	5345	662	1	9606
IMNTFSVVPSPK	1	0	Unmodified	1318.6955	0.69550848	265;98;81;320	P07437;P68371;Q13509;P04350	TUBB;TUBB4B;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	0	0	3.5	0.5			1	1		22.419	22.419	2	0.0014976	9733	DP1061-9	150.61	104.22			NaN	NaN	NaN	0	0	Median	27712000	0	27712000	1298	98;265;320;81	1235	2594;2595	5346;5347;5348	5347		3	9606
IMNTFSVVPSPK	1	0	Oxidation (M)	1334.6904	0.69042311	265;98;81;320	P07437;P68371;Q13509;P04350	TUBB;TUBB4B;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	0	4	0				1		17.174	17.174	2	0.00012358	8430	DP1061-9	121.9	86.675			3.8033	3.9757	NaN	1	0	Median	129430000	26388000	103040000	1299	98;265;320;81	1235	2596	5349;5350;5351;5352	5351	82	4	9606
IMSSPLSK	1	0	Oxidation (M)	877.4579	0.45790397	227	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	1	0	5	0					1	12.717	12.717	2	0.014761	3169	DP1061-10	82.241	31.609			16.455	16.326	NaN	1	0	Median	52628000	3022000	49607000	1300	227	1236	2597	5353;5354	5354	290	2	9606
INEELESQYQQSMDSK	1	0	Oxidation (M)	1943.8419	0.84185096	25	O00193	SMAP	Small acidic protein	yes	yes	0	1	0	5	0					1	15.788	15.788	2	2.5649E-06	5774	DP1061-10	121.28	78.855			NaN	NaN	NaN	0	0	Median	2084200	0	2084200	1301	25	1237	2598	5355;5356;5357	5356	19	3	9606
INEILSNALK	1	0	Unmodified	1113.6394	0.63937381	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			17.78	17.78	2	0.016139	8490	DP1061-8	72.607	34.447			2.3767	2.5387	NaN	1	0	Median	26943000	7599700	19343000	1302	209	1238	2599	5358;5359	5359		2	9606
INGCAIQCR	0	1	Unmodified	1090.5012	0.50118255	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			13.087	13.087	2	7.3695E-17	3300	DP1061-7	172.03	172.03			1.0006	1.1443	13.284	3	0	Median	172960000	86241000	86715000	1303	116	1239	2600;2601;2602	5360;5361;5362;5363;5364;5365;5366;5367	5365		8	9606
INGWAVECR	0	1	Unmodified	1103.5182	0.51821282	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			2			16.488	16.488	2	0.015963	7223	DP1061-8	88.948	46.839			NaN	NaN	NaN	0	0	Median	12133000	0	12133000	1304	86	1240	2603;2604	5368;5369;5370	5368		3	9606
INTQWLLTSGTTEANAWK	1	0	Unmodified	2033.0218	0.02180466	24	CON__Streptavidin			yes	yes	0	0	0	4.67	0.943		1			8	25.755	25.755	2;3	1.9044000000000002E-171	14681	DP1061-10	357.95	297.79		+	NaN	NaN	NaN	0	0	Median	2610600000	2610600000	0	1305	24	1241	2605;2606;2607;2608;2609;2610;2611;2612;2613	5371;5372;5373;5374;5375;5376;5377;5378;5379;5380;5381;5382;5383;5384;5385;5386;5387;5388;5389;5390;5391;5392;5393	5381		23	
INVYYNEATGGK	1	0	Unmodified	1327.6408	0.64083038	265	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	3.5	0.5			1	1		16.041	16.041	2	3.5424E-11	6706	DP1061-9	151.83	122.91			4.95	5.1743	NaN	1	0	Median	120550000	17679000	102870000	1306	265	1242	2614;2615	5394;5395;5396;5397;5398;5399;5400	5397		7	9606
INVYYNEATGGNYVPR	0	1	Unmodified	1828.8744	0.87441214	81	P04350	TUBB4A	Tubulin beta-4A chain	yes	yes	0	0	0	4	0				1		18.046	18.046	2	0.017359	9683	DP1061-9	85.258	50.371			NaN	NaN	NaN	0	0	Median	0	0	0	1307	81	1243	2616	5401	5401		1	9606
INYEESMMVR	0	1	2 Oxidation (M)	1302.5584	0.55842266	420	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	2	0	4	0				1		14.197	14.197	2	0.010805	4772	DP1061-9	78.113	57.243			NaN	NaN	NaN	0	0	Median	7334800	0	7334800	1308	420	1244	2617	5402;5403	5403	519;520	2	9606
IPCDSPQSDPVDTPTSTK	1	0	Unmodified	1943.8782	0.87823647	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		14.957	14.957	2	4.1385999999999998E-22	5546	DP1061-7	219.97	182.03			NaN	NaN	NaN	0	0	Median	50278000	0	50278000	1309	182	1245	2618;2619;2620	5404;5405;5406;5407;5408	5407		5	9606
IPDEFDNDPILVQQLR	0	1	Unmodified	1910.9738	0.97379183	369	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				1		21.19	21.19	2	3.2228E-09	13675	DP1061-9	137.09	101.89			1.5559	1.6635	NaN	1	0	Median	8772900	4185500	4587400	1310	369	1246	2621	5409;5410	5409		2	9606
IPIGFIPLGETSSLSHTLFAESGNK	1	0	Unmodified	2614.3643	0.36426817	371	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	4	0				1		22.251	22.251	3	0.0014961	15109	DP1061-9	83.727	53.763			NaN	NaN	NaN	0	0	Median	3937800	0	3937800	1311	371	1247	2622	5411	5411		1	9606
IPILLIQQPGK	1	0	Unmodified	1218.77	0.76999406	457	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				19.649	19.649	2	0.0030157	11358	DP1061-7	109.21	93.012			NaN	NaN	NaN	0	0	Median	9277000	0	9277000	1312	457	1248	2623	5412;5413	5413		2	9606
IPLSQEEITLQGHAFEAR	0	1	Unmodified	2038.0484	0.048353761	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.08	0.266			12	1		26.293	26.293	2;3	1.7609999999999998E-67	10044	DP1061-9	226.06	226.06			0.83098	0.89375	9.9291	10	0	Median	679480000	368370000	311110000	1313	455	1249	2624;2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636	5414;5415;5416;5417;5418;5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447;5448;5449;5450;5451;5452;5453;5454;5455;5456;5457;5458;5459;5460;5461;5462	5460		49	9606
IPPNVEK	1	0	Unmodified	795.44905	0.44905385	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				12.425	12.425	2	0.023001	1947	DP1061-6	97.473	40.02			NaN	NaN	NaN	0	0	Median	253020000	0	253020000	1314	309	1250	2637;2638;2639	5463;5464;5465;5466	5463		4	9606
IPQLLLER	0	1	Unmodified	980.60187	0.6018661	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	2	0		1				18.839	18.839	2	0.01879	10384	DP1061-7	93.195	34.414			NaN	NaN	NaN	0	0	Median	3240800	0	3240800	1315	397	1251	2640	5467	5467		1	9606
IPVQAVWAGWGHASENPK	1	0	Unmodified	1945.9799	0.97988027	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2	1.22	2	1		1		20.134	20.134	3	2.4647E-16	10801	DP1061-9	146.1	129.58			1.1148	1.2447	25.676	3	0	Plateau	100720000	57542000	43174000	1316	309;34	1252	2641;2642;2643;2644	5468;5469;5470;5471;5472;5473;5474;5475;5476;5477	5477		10	9606
IQDIVGILR	0	1	Unmodified	1025.6233	0.62332982	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				19.152	19.152	2	0.0022072	10686	DP1061-7	119.29	81.563			NaN	NaN	NaN	0	0	Median	25588000	0	25588000	1317	184	1253	2645	5478;5479	5479		2	9606
IQDKEGIPPDQQR	1	1	Unmodified	1522.774	0.77396981	260	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	1	0	1					12.578	12.578	3	0.00065185	2124	DP1061-6	89.992	56.935			2.4601	2.6717	NaN	1	0	Median	14156000	3786000	10370000	1318	260	1254	2646	5480;5481	5480		2	9606
IQDWYDKK	2	0	Unmodified	1094.5397	0.53965977	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1					14.314	14.314	2	0.049007	4071	DP1061-6	106.36	57.853		+	NaN	NaN	NaN	0	0	Median	14603000	14603000	0	1319	19	1255	2647	5482	5482		1	9606
IQDYDVSLDK	1	0	Unmodified	1194.5768	0.57683314	442	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	2	0		1				16.284	16.284	2	0.00568	7445	DP1061-7	104.01	59.636			NaN	NaN	NaN	0	0	Median	9379800	0	9379800	1320	442	1256	2648	5483	5483		1	9606
IQEGVESLAGYADIFLR	0	1	Unmodified	1879.968	0.96797818	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		23.756	23.756	2	1.8234999999999998E-66	15976	DP1061-8	222.74	222.74			0.94961	1.033	NaN	1	0	Median	19289000	9730700	9557900	1321	87	1257	2649;2650	5484;5485;5486;5487;5488	5487		5	9606
IQEQESSGEEDSDLSPEER	0	1	Unmodified	2162.9087	0.90874455	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	5	0					1	15.045	15.045	2	4.003E-16	5346	DP1061-10	188.92	149.04			NaN	NaN	NaN	0	0	Median	3818800	0	3818800	1322	173	1258	2651	5489;5490;5491;5492	5492		4	9606
IQFVGACNPPTDPGR	0	1	Unmodified	1627.7777	0.77767498	333	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					17.068	17.068	2	0.027108	7137	DP1061-6	80.69	44.37			NaN	NaN	NaN	0	0	Median	0	0	0	1323	333	1259	2652	5493	5493		1	9606
IQHQDWTGGK	1	0	Unmodified	1168.5625	0.56252048	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	2.6	1.02	1	1	2	1		12.644	12.644	2;3	5.6105E-05	2994	DP1061-8	137.95	73.386		+	NaN	NaN	NaN	0	0	Median	78982000	78982000	0	1324	5	1260	2653;2654;2655;2656;2657	5494;5495;5496;5497;5498;5499;5500;5501	5497		8	
IQIEAIPLALQGR	0	1	Unmodified	1420.8402	0.84019889	488	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	4	0				1		20.643	20.643	2	0.00078386	13135	DP1061-9	112.94	67.915			NaN	NaN	NaN	0	0	Median	2465200	0	2465200	1325	488	1261	2658	5502;5503	5503		2	9606
IQINQEEER	0	1	Unmodified	1157.5677	0.56766543	178	P42696	RBM34	RNA-binding protein 34	yes	yes	0	0	0	4	0				1		13.763	13.763	2	0.020558	4061	DP1061-9	83.998	28.449			NaN	NaN	NaN	0	0	Median	15720000	0	15720000	1326	178	1262	2659	5504	5504		1	9606
IQLIFER	0	1	Unmodified	917.53345	0.53345218	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				18.652	18.652	2	9.8609E-05	10113	DP1061-7	138.37	19.681			NaN	NaN	NaN	0	0	Median	19060000	0	19060000	1327	347	1263	2660	5505;5506;5507	5505		3	9606
IQLPVVSK	1	0	Unmodified	882.55385	0.55385327	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				16.701	16.701	2	0.0024634	7920	DP1061-7	122.18	34.147			NaN	NaN	NaN	0	0	Median	51479000	0	51479000	1328	182	1264	2661;2662	5508;5509;5510;5511	5511		4	9606
IQLYDNDIYFIPR	0	1	Unmodified	1668.8512	0.8511575	388	Q6PCB5	RSBN1L	Round spermatid basic protein 1-like protein	yes	yes	0	0	0	2	0		1				21.761	21.761	2	8.0422E-05	14002	DP1061-7	121.83	63.131			NaN	NaN	NaN	0	0	Median	6028500	0	6028500	1329	388	1265	2663	5512;5513;5514;5515	5513		4	9606
IQQAAYVPSEQDDR	0	1	Unmodified	1618.7587	0.75871368	573				yes	yes	0	0	0	4	0				1		17.683	17.683	3	0.001056	9122	DP1061-9	95.183	52.386	+		NaN	NaN	NaN	0	0	Median	7359900	0	7359900	1330	573	1266	2664	5516	5516		1	9606
IQTQPGYANTLR	0	1	Unmodified	1360.7099	0.709913	279	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	4.2	1.6	1				4	16.391	16.391	2	0.00026717	4996	DP1061-6	116.23	116.23			3.0188	3.3128	NaN	1	0	Median	44987000	10758000	34229000	1331	279	1267	2665;2666;2667;2668;2669	5517;5518;5519;5520;5521;5522;5523	5522		7	9606
IRDQAWDDVVR	0	2	Unmodified	1371.6895	0.6895119	30	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2	0		1				16.315	16.315	3	0.021275	7476	DP1061-7	66.393	6.1375			NaN	NaN	NaN	0	0	Median	10260000	0	10260000	1332	30	1268	2670	5524;5525	5525		2	9606
IREEYPDR	0	2	Unmodified	1076.5251	0.52507234	265;98;328;368	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	1	3.25	0.433			3	1		12.478	12.478	2;3	7.2389E-05	2785	DP1061-8	127.46	127.46			3.8727	3.9685	7.2112	2	0	Median	327240000	61597000	265640000	1333	98;265;328;368	1269	2671;2672;2673;2674	5526;5527;5528;5529;5530;5531;5532;5533;5534;5535	5526		10	9606
IRLENEIQTYR	0	2	Unmodified	1433.7627	0.76267685	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1.5	0.5	1	1				16.195	16.195	3	0.00060169	7245	DP1061-7	114.86	47.477		+	NaN	NaN	NaN	0	0	Median	56130000	56130000	0	1334	17	1270	2675;2676	5536;5537;5538	5538		3	9606
ISEDVEER	0	1	Unmodified	975.4509	0.45090434	220	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	4	1			1		1	12.715	12.715	2	0.0011746	3319	DP1061-10	129.68	92.524			NaN	NaN	NaN	0	0	Median	46527000	0	46527000	1335	220	1271	2677;2678	5539;5540;5541;5542	5540		4	9606
ISEQFTAMFR	0	1	Oxidation (M)	1244.586	0.58595803	265;98;328;81;320	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	0	3.33	0.471			2	1		17.88	17.88	2	0.0021669	9050	DP1061-9	99.815	63.42			4.6272	5.0104	4.1219	3	0	Median	262220000	44696000	217520000	1336	98;265;328;320;81	1272	2679;2680;2681	5543;5544;5545;5546;5547;5548;5549	5548	83	7	9606
ISEQFTAMFR	0	1	Unmodified	1228.591	0.59104341	265;98;328;81;320	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	0	0	3.5	0.5			1	1		19.603	19.603	2	1.9935E-16	11659	DP1061-9	168.26	105.71			4.3218	4.6495	4.4365	2	0	Median	64010000	13675000	50335000	1337	98;265;328;320;81	1272	2682;2683	5550;5551;5552;5553	5552		4	9606
ISEYSEAAITIR	0	1	Unmodified	1351.6983	0.69834526	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				17.396	17.396	2	9.2317E-05	8937	DP1061-7	133.23	80.972			NaN	NaN	NaN	0	0	Median	8525000	0	8525000	1338	396	1273	2684	5554;5555;5556	5555		3	9606
ISGLIYEETR	0	1	Unmodified	1179.6136	0.61355299	247	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					10	28.018	28.018	2	0.0042147	18478	DP1061-10	109.44	66.84			NaN	NaN	NaN	0	0	Median	26869000	6151700	20717000	1339	247	1274	2685;2686;2687;2688;2689;2690;2691;2692;2693;2694	5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569	5566		13	9606
ISISTSGGSFR	0	1	Unmodified	1110.5669	0.56693715	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	1	0	1					16.1	16.1	2	0.0029995	5887	DP1061-6	109.29	53.279		+	NaN	NaN	NaN	0	0	Median	18962000	18962000	0	1340	18	1275	2695	5570;5571	5570		2	9606
ISLGLPVGAVINCADNTGAK	1	0	Unmodified	1969.0303	0.030260856	248	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	24.858	24.858	2	0.0046112	13343	DP1061-10	95.981	69.57			NaN	NaN	NaN	0	0	Median	23786000	0	23786000	1341	248	1276	2696	5572;5573	5573		2	9606
ISLLLDPGSFVESDMFVEHR	0	1	Oxidation (M)	2306.1253	0.12528345	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		22.168	22.168	2;3	3.571E-20	14018	DP1061-8	143.56	96.525			0.94635	0.99778	5.1498	3	0	Median	162080000	80446000	81630000	1342	87	1277	2697;2698;2699	5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585;5586;5587	5581	107	14	9606
ISLLLDPGSFVESDMFVEHR	0	1	Unmodified	2290.1304	0.13036883	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			23.248	23.248	3	0.0033516	15408	DP1061-8	85.496	49.243			NaN	NaN	NaN	0	0	Median	0	0	0	1343	87	1277	2700	5588	5588		1	9606
ISRMEKMTMMMK	2	1	Acetyl (Protein N-term);Oxidation (M)	1573.7159	0.71586805	310	Q13103	SPP2	Secreted phosphoprotein 24	yes	yes	1	1	2	3	0			1			16.307	16.307	2	0.023883	7058	DP1061-8	56.404	11.557			NaN	NaN	NaN	0	0	Median	5406500	5406500	0	1344	310	1278	2701	5589	5589	416	1	9606
ISSLLEEQFQQGK	1	0	Unmodified	1505.7726	0.77257283	235	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					4	23.075	23.075	2	0.00044267	11653	DP1061-10	117.14	64.646			NaN	NaN	NaN	0	0	Median	5959300	0	5959300	1345	235	1279	2702;2703;2704;2705	5590;5591;5592;5593	5590		4	9606
ISTLTIEEGNLDIQRPK	1	1	Unmodified	1926.0422	0.042205751	307	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		17.816	17.816	3	2.2224E-08	9362	DP1061-9	162.7	124.59			NaN	NaN	NaN	0	0	Median	21782000	0	21782000	1346	307	1280	2706	5594	5594		1	9606
ISVLYSFLR	0	1	Unmodified	1096.6281	0.62808085	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				21.466	21.466	2	0.00021408	13734	DP1061-7	164.72	72.824			NaN	NaN	NaN	0	0	Median	5350400	0	5350400	1347	313	1281	2707	5595;5596	5596		2	9606
ISVMGGEQAANVLATITK	1	0	Oxidation (M)	1817.9557	0.95569893	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.16	0.488			17	1	1	26.815	26.815	2;3	8.441699999999999E-23	12392	DP1061-9	164.93	135.69			0.91079	0.97286	8.8624	6	0	Median	924820000	479420000	445390000	1348	501	1282	2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726	5597;5598;5599;5600;5601;5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614;5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638;5639;5640;5641;5642;5643	5643	600	47	9606
ISVMGGEQAANVLATITK	1	0	Unmodified	1801.9608	0.96078431	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.353	21.353	2	3.3705E-55	12980	DP1061-8	215.87	215.87			0.86314	0.91206	14.16	2	0	Median	236370000	119210000	117170000	1349	501	1282	2727;2728	5644;5645;5646;5647;5648	5645		5	9606
ISVYYNEATGGK	1	0	Unmodified	1300.6299	0.62993134	98	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	4	0				1		15.816	15.816	2	4.1619E-11	6668	DP1061-9	150.81	114.36			4.7895	5.0066	NaN	1	0	Median	141700000	24199000	117500000	1350	98	1283	2729	5649;5650;5651	5649		3	9606
ITDIIGK	1	0	Unmodified	758.4538	0.45380487	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					14.708	14.708	2	0.0048281	4544	DP1061-6	108.24	7.0264			NaN	NaN	NaN	0	0	Median	0	0	0	1351	309	1284	2730;2731	5652;5653	5652		2	9606
ITDIIGKEEGIGPENLR	1	1	Unmodified	1852.9894	0.9894419	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.47	0.718	10	3	2			18.837	18.837	2;3	2.1357E-113	7859	DP1061-6	269.7	269.7			0.75915	0.82266	19.243	10	0	Median	653970000	360730000	293240000	1352	309	1285	2732;2733;2734;2735;2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746	5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694;5695;5696;5697;5698	5661		45	9606
ITDQEASENHVAATGSHLCVLR	0	1	Unmodified	2407.155	0.15502045	457	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				15.438	15.438	4	0.00079555	6176	DP1061-7	100.01	70.817			NaN	NaN	NaN	0	0	Median	18785000	0	18785000	1353	457	1286	2747	5699;5700	5700		2	9606
ITFLIAQEK	1	0	Unmodified	1061.6121	0.61209643	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.362	18.362	2	0.00067303	8604	DP1061-6	117.81	60.764			0.87965	0.98328	NaN	1	0	Median	9366200	5038700	4327500	1354	34	1287	2748	5701;5702;5703	5702		3	9606
ITGEAFVQFASQELAEK	1	0	Unmodified	1866.9363	0.9363437	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		22.261	22.261	2	2.6720000000000003E-41	15040	DP1061-9	197.38	174.01			6.4582	6.7509	NaN	1	0	Median	61921000	6610100	55311000	1355	213	1288	2749	5704;5705;5706;5707;5708	5705		5	9606
ITHQIVDRPGQQTSVIGR	0	2	Unmodified	2004.0865	0.086470602	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	1	3	0			2			14.16	14.16	3;4	0.0043366	4947	DP1061-8	84.653	50.56			NaN	NaN	NaN	0	0	Median	74056000	0	74056000	1356	29	1289	2750;2751	5709;5710;5711;5712	5712		4	9606
ITISPLQELTLYNPER	0	1	Unmodified	1886.0149	0.014928368	27	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			22.285	22.285	2	6.2465E-11	14150	DP1061-8	187.78	132.06			NaN	NaN	NaN	0	0	Median	8385100	0	8385100	1357	27	1290	2752	5713;5714	5713		2	9606
ITITNDQNR	0	1	Unmodified	1073.5465	0.54653606	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			12.973	12.973	2	0.0006505	3358	DP1061-8	153.04	92.918			NaN	NaN	NaN	0	0	Median	42228000	0	42228000	1358	112	1291	2753	5715;5716	5716		2	9606
ITLDCIMTYK	1	0	Oxidation (M)	1272.6094	0.60939559	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					17.717	17.717	2	0.022481	7984	DP1061-6	76.827	38.74			NaN	NaN	NaN	0	0	Median	7744000	0	7744000	1359	68	1292	2754	5717	5717	67	1	9606
ITLETDEDMVTEIR	0	1	Oxidation (M)	1679.7924	0.79238157	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	1	0	1	0	1					17.935	17.935	2	9.0747E-06	8100	DP1061-6	132.76	69.549			NaN	NaN	NaN	0	0	Median	4119000	0	4119000	1360	356	1293	2755	5718;5719;5720	5718	465	3	9606
ITLIIGGSYGAGNYGMCGR	0	1	Oxidation (M)	1974.9292	0.9291666	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.75	0.433			1	3		19.57	19.57	2	2.9952E-09	10741	DP1061-8	122.39	89.46			1.0219	1.0956	NaN	1	0	Median	53455000	19238000	34217000	1361	501	1294	2756;2757;2758;2759	5721;5722;5723;5724;5725;5726;5727;5728;5729	5722	601	9	9606
ITPSYVAFTPEGER	0	1	Unmodified	1565.7726	0.77257283	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			3			22.48	22.48	2	0.0056537	9133	DP1061-8	89.301	52.776			NaN	NaN	NaN	0	0	Median	27007000	0	27007000	1362	112	1295	2760;2761;2762	5730;5731;5732;5733	5731		4	9606
ITSEMGSASQANIR	0	1	Oxidation (M)	1479.6988	0.69875596	492	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	1	0	1	0	1					13	13	2	1.2905E-05	2653	DP1061-6	147.28	120.49			NaN	NaN	NaN	0	0	Median	3929900	0	3929900	1363	492	1296	2763	5734;5735	5734	591	2	9606
ITSENPDEGFK	1	0	Unmodified	1235.567	0.56699673	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					14.341	14.341	2	0.0060875	4142	DP1061-6	112.11	69.711			NaN	NaN	NaN	0	0	Median	0	0	0	1364	309;34	1297	2764	5736	5736		1	9606
ITSENPDEGFKPSSGTVQELNFR	1	1	Unmodified	2551.2191	0.2190605	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1.82	1.03	6	2	2	1		18.654	18.654	2;3	4.7882E-129	8014	DP1061-6	268.93	268.93			0.72416	0.78644	7.3535	7	0	Median	1255600000	727170000	528460000	1365	309;34	1298	2765;2766;2767;2768;2769;2770;2771;2772;2773;2774;2775	5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759;5760;5761;5762;5763;5764;5765;5766;5767	5743		31	9606
IVAERPGTNSTGPAPMAPPR	0	2	Oxidation (M)	2034.0317	0.031657839	315	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	1	2	0		1				13.858	13.858	3	0.0086646	4293	DP1061-7	77.899	33.165			NaN	NaN	NaN	0	0	Median	6198500	0	6198500	1366	315	1299	2776	5768	5768	418	1	9606
IVAERPGTNSTGPAPMAPPR	0	2	Unmodified	2018.0367	0.036743217	315	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	2	0		1				14.742	14.742	3	0.00067642	5485	DP1061-7	98.077	64.453			NaN	NaN	NaN	0	0	Median	0	0	0	1367	315	1299	2777	5769	5769		1	9606
IVAETMNNYLFGER	0	1	Oxidation (M)	1671.7927	0.79265635	478	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	1	0	4	0				1		18.294	18.294	2	8.0402E-05	9947	DP1061-9	143.97	101.76			NaN	NaN	NaN	0	0	Median	21748000	0	21748000	1368	478	1300	2778	5770;5771	5770	575	2	9606
IVALNAHTFLR	0	1	Unmodified	1253.7244	0.72444085	136;3	P22087;A6NHQ2	FBL;FBLL1	rRNA 2'-O-methyltransferase fibrillarin;rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	no	no	0	0	0	4	0				2		17.48	17.48	2;3	3.6275E-07	8919	DP1061-9	135.86	113.53			12.422	13.281	NaN	1	0	Median	100810000	7782800	93031000	1369	136;3	1301	2779;2780	5772;5773;5774;5775;5776;5777	5774		6	9606
IVALSSSLSNAK	1	0	Unmodified	1188.6714	0.67140222	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					15.949	15.949	2	0.00078295	5772	DP1061-6	117.7	77.697			NaN	NaN	NaN	0	0	Median	15064000	0	15064000	1370	66	1302	2781	5778;5779	5779		2	9606
IVDDLKDEAEQYR	1	1	Unmodified	1592.7682	0.76821574	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		2				16.204	16.204	2	0.01884	7282	DP1061-7	141.71	64.048			NaN	NaN	NaN	0	0	Median	0	0	0	1371	64	1303	2782;2783	5780;5781	5781		2	9606
IVEPYIAWGYPNLK	1	0	Unmodified	1661.8817	0.88172935	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	5	0					10	28.322	28.322	2	2.1955E-05	16818	DP1061-10	121.83	38.999			NaN	NaN	NaN	0	0	Median	60362000	0	60362000	1372	132	1304	2784;2785;2786;2787;2788;2789;2790;2791;2792;2793	5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795	5788		14	9606
IVEQDTMPPK	1	0	Oxidation (M)	1172.5747	0.57472465	32	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	1	0	3	0			1			12.643	12.643	2	0.02725	2978	DP1061-8	75.378	26.817			NaN	NaN	NaN	0	0	Median	6264100	0	6264100	1373	32	1305	2794	5796	5796	25	1	9606
IVGDLAQFMVQNGLSR	0	1	Oxidation (M)	1762.9036	0.90360378	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.2	0.6		9		1		21.903	21.903	2;3	4.4179E-10	11467	DP1061-7	142.1	142.1			0.9897	1.1038	12.703	5	0	Median	463210000	231670000	231540000	1374	116	1306	2795;2796;2797;2798;2799;2800;2801;2802;2803;2804	5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807;5808;5809;5810;5811;5812;5813;5814	5800	156	18	9606
IVGDLAQFMVQNGLSR	0	1	Unmodified	1746.9087	0.90868916	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		22.088	22.088	2;3	1.4915E-109	14382	DP1061-7	269.14	269.14			0.95156	1.0114	4.3893	4	0	Median	278790000	139770000	139020000	1375	116	1306	2805;2806;2807;2808	5815;5816;5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828;5829;5830	5818		16	9606
IVLQIDNAR	0	1	Unmodified	1040.5978	0.59784335	92	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	4	0				1		16.491	16.491	2	0.05402	7703	DP1061-9	71.501	28.255			NaN	NaN	NaN	0	0	Median	11306000	0	11306000	1376	92	1307	2809	5831	5831		1	9606
IVQAEGEAEAAK	1	0	Unmodified	1214.6143	0.61428128	458	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		12.667	12.667	2	0.00086101	2978	DP1061-9	108.43	66.241			1.822	1.9046	NaN	1	0	Median	6370000	1974600	4395400	1377	458	1308	2810	5832;5833	5833		2	9606
IVQMTEAEVR	0	1	Oxidation (M)	1190.5965	0.59652272	234	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	1	0	4	0				1		13.04	13.04	2	0.0050961	3301	DP1061-9	101.11	69.575			NaN	NaN	NaN	0	0	Median	37268000	0	37268000	1378	234	1309	2811	5834	5834	297	1	9606
IVSGCPLPEACELYYVNR	0	1	Unmodified	2139.0129	0.012896232	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		2				20.171	20.171	2	5.506E-08	11816	DP1061-7	157.52	119.72			NaN	NaN	NaN	0	0	Median	33651000	0	33651000	1379	485	1310	2812;2813	5835;5836;5837	5835		3	9606
IVSISLGK	1	0	Unmodified	815.51165	0.5116541	382	Q5VY09	IER5	Immediate early response gene 5 protein	yes	yes	0	0	0	5	0					1	14.296	14.296	2	0.0033045	4664	DP1061-10	99.375	8.5983			8.5072	8.4405	NaN	1	0	Median	33021000	3926500	29094000	1380	382	1311	2814	5838;5839	5839		2	9606
IVVFQYSDGK	1	0	Unmodified	1154.5972	0.59717465	362	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1.5	0.5	1	1				17.575	17.575	2	0.020808	9109	DP1061-7	80.755	41.208			NaN	NaN	NaN	0	0	Median	4464300	0	4464300	1381	362	1312	2815;2816	5840;5841	5841		2	9606
IVYLYTK	1	0	Unmodified	898.51641	0.51640513	193	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					2	18.435	18.435	2	0.03214	6146	DP1061-10	92.467	42.347			NaN	NaN	NaN	0	0	Median	36315000	0	36315000	1382	193	1313	2817;2818	5842;5843;5844	5843		3	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Oxidation (M)	2640.3006	0.30062206	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.09	0.287			10	1		24.743	24.743	2;3	3.4657E-18	10735	DP1061-8	121.25	121.25			0.66376	0.68599	3.8915	3	0	Plateau	535930000	329510000	206420000	1383	455	1314	2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829	5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865;5866;5867;5868;5869;5870;5871;5872;5873	5848	539	29	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Unmodified	2624.3057	0.30570743	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.774	20.774	3	2.6588E-13	12192	DP1061-8	109.44	109.44			0.63642	0.67155	NaN	1	0	Median	126610000	76140000	50467000	1384	455	1314	2830	5874;5875;5876;5877	5875		4	9606
IYEAQPEISR	0	1	Unmodified	1204.6088	0.60880197	54	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					14.976	14.976	2	0.0016171	4743	DP1061-6	155.42	100.81			NaN	NaN	NaN	0	0	Median	9303200	0	9303200	1385	54	1315	2831	5878;5879	5878		2	9606
IYEISNR	0	1	Unmodified	893.46068	0.46068117	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				14.285	14.285	2	0.0037215	4823	DP1061-7	114.02	56.212			NaN	NaN	NaN	0	0	Median	17366000	0	17366000	1386	284	1316	2832	5880;5881	5880		2	9606
IYGFYDECK	1	0	Unmodified	1193.5063	0.50631073	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.33	0.471			2	1		17.98	17.98	2	0.0030178	9172	DP1061-9	117.4	82.575			NaN	NaN	NaN	0	0	Median	260280000	0	260280000	1387	163;233;234	1317	2833;2834;2835	5882;5883;5884;5885;5886;5887	5887		6	9606
IYGFYDECKR	1	1	Unmodified	1349.6074	0.60742176	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			1	1		16.149	16.149	3	0.00051618	7103	DP1061-9	114.51	96.44			NaN	NaN	NaN	0	0	Median	102070000	0	102070000	1388	163;233;234	1318	2836;2837	5888;5889;5890;5891	5891		4	9606
IYQEEEMPESGAGSEFNR	0	1	Oxidation (M)	2087.8742	0.87421372	157	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	1	0	4	0				1		15.996	15.996	2	3.1764E-30	6939	DP1061-9	234.9	212.7			NaN	NaN	NaN	0	0	Median	9291500	0	9291500	1389	157	1319	2838	5892;5893	5892	198	2	9606
IYVAANSGAR	0	1	Unmodified	1020.5352	0.53524309	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					12.956	12.956	2	0.0019937	2604	DP1061-6	103.74	81.889			0.93126	1.0463	NaN	1	0	Median	24126000	12036000	12090000	1390	34	1320	2839	5894;5895;5896	5895		3	9606
IYVSANSGAR	0	1	Unmodified	1036.5302	0.53015772	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				13.038	13.038	1;2	1.065E-06	2679	DP1061-6	129.42	91.261			0.87318	0.83698	8.3361	3	0	Plateau	1646599999.9999998	874360000	772260000	1391	309	1321	2840;2841;2842	5897;5898;5899;5900;5901;5902	5898		6	9606
KADTEEEFLAFR	1	1	Unmodified	1454.7042	0.70415892	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				17.978	17.978	3	0.0078063	9655	DP1061-7	72.731	20.038			NaN	NaN	NaN	0	0	Median	15772000	0	15772000	1392	182	1322	2843	5903;5904	5904		2	9606
KADTEEEFLAFRK	2	1	Unmodified	1582.7991	0.79912193	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				16.339	16.339	3	0.0022289	7305	DP1061-7	101.38	59.284			NaN	NaN	NaN	0	0	Median	32410000	0	32410000	1393	182	1323	2844	5905	5905		1	9606
KADVEEEFLALR	1	1	Unmodified	1418.7405	0.74054442	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2.4	1.02	1	2	1	1		18.748	18.748	2;3	0.00068553	9843	DP1061-8	99.011	72.384			NaN	NaN	NaN	0	0	Median	57401000	0	57401000	1394	182	1324	2845;2846;2847;2848;2849	5906;5907;5908;5909;5910;5911;5912;5913;5914;5915	5912		10	9606
KADVEEEFLALRK	2	1	Unmodified	1546.8355	0.83550744	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	2	2	0		1				17.227	17.227	3	8.5918E-05	8632	DP1061-7	121.56	99.167			NaN	NaN	NaN	0	0	Median	30172000	0	30172000	1395	182	1325	2850	5916	5916		1	9606
KADVEEESLALR	1	1	Unmodified	1358.7042	0.70415892	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	3	3				15.148	15.148	2;3	0.00016496	4906	DP1061-6	117.27	85.015			NaN	NaN	NaN	0	0	Median	47460000	0	47460000	1396	182	1326	2851;2852;2853;2854;2855;2856	5917;5918;5919;5920;5921;5922;5923;5924	5917		8	9606
KADVEGELLACR	1	1	Unmodified	1359.6816	0.68164933	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				15.857	15.857	3	0.0036222	6751	DP1061-7	79.744	48.266			NaN	NaN	NaN	0	0	Median	47129000	0	47129000	1397	182	1327	2857;2858	5925;5926;5927;5928	5928		4	9606
KAEEATEAQEVVEATPEGACTEPR	1	1	Unmodified	2601.1864	0.18643974	67	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	1	4	0				1		16.108	16.108	3	9.6799E-13	7106	DP1061-9	138.24	106.61			NaN	NaN	NaN	0	0	Median	17675000	0	17675000	1398	67	1328	2859	5929;5930;5931	5930		3	9606
KAEVNTIPGFDGVVK	2	0	Unmodified	1572.8512	0.8511575	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			2			17.414	17.414	2;3	0.0051158	7860	DP1061-8	94.717	64.325			0.80176	0.91517	NaN	1	0	Median	34328000	26052000	8275800	1399	86	1329	2860;2861	5932;5933	5932		2	9606
KAEVNTIPGFDGVVKDAEEAVR	2	1	Unmodified	2343.207	0.20703925	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	3	0			2			19.616	19.616	3;4	1.8597E-27	10791	DP1061-8	160.47	142.15			0.79922	0.82083	3.2172	2	0	Median	107090000	57249000	49840000	1400	86	1330	2862;2863	5934;5935;5936;5937;5938;5939	5936		6	9606
KAFMGPLK	2	0	Oxidation (M)	906.49971	0.49970921	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	1	1	0	1					12.521	12.521	2	0.022987	2252	DP1061-6	69.198	26.132			NaN	NaN	NaN	0	0	Median	7218600	0	7218600	1401	169	1331	2864	5940	5940	215	1	9606
KAFSSPQEEEEAGFTGR	1	1	Unmodified	1868.8541	0.85407063	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2	0		1				15.402	15.402	3	3.4947E-05	6217	DP1061-7	107.62	78.043			NaN	NaN	NaN	0	0	Median	6003800	0	6003800	1402	334	1332	2865	5941;5942	5942		2	9606
KAGPGSLELCGLPSQK	2	0	Unmodified	1640.8556	0.85559095	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1		2		2		16.202	16.202	2;3	1.9217E-08	7215	DP1061-7	178.68	137.56			NaN	NaN	NaN	0	0	Median	183530000	0	183530000	1403	339	1333	2866;2867;2868;2869	5943;5944;5945;5946;5947;5948;5949;5950;5951	5946		9	9606
KAHLMEIQVNGGTVAEK	2	0	Oxidation (M)	1839.9513	0.95128225	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	1	4	0				1		13.962	13.962	3	0.00045116	4582	DP1061-9	102.03	63.516			NaN	NaN	NaN	0	0	Median	18614000	0	18614000	1404	169	1334	2870	5952;5953	5952	213	2	9606
KALAAAGYDVEK	2	0	Unmodified	1234.6558	0.65575216	125;110;124	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				2		13.593	13.593	2;3	0.0014043	3954	DP1061-9	121.02	59.371			14.698	15.377	NaN	1	0	Median	64894000	2784000	62110000	1405	125;110;124	1335	2871;2872	5954;5955;5956;5957	5956		4	9606
KALAAAGYDVEKNNSR	2	1	Unmodified	1705.8747	0.87474649	125;110;124	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	2	4	0				1		12.919	12.919	3	4.1325E-11	3299	DP1061-9	190.18	159.7			NaN	NaN	NaN	0	0	Median	10154000	0	10154000	1406	125;110;124	1336	2873	5958;5959	5959		2	9606
KALVDILSEVSK	2	0	Unmodified	1300.7602	0.76021723	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				18.976	18.976	2	0.038296	10495	DP1061-7	88.803	48.745			NaN	NaN	NaN	0	0	Median	4859500	0	4859500	1407	466	1337	2874	5960	5960		1	9606
KAPPPPPTSMPK	2	0	Oxidation (M)	1262.6693	0.66929373	38	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	1	1	2	0		1				12.442	12.442	3	0.018848	2549	DP1061-7	69.864	26.361			NaN	NaN	NaN	0	0	Median	0	0	0	1408	38	1338	2875	5961	5961	40	1	9606
KASGPPVSELITK	2	0	Unmodified	1325.7555	0.7554662	125;110;124	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	no	no	0	0	1	4.33	0.471				2	1	18.074	18.074	2;3	1.4724E-05	5782	DP1061-9	123.1	95.183			NaN	NaN	NaN	0	0	Median	420950000	0	420950000	1409	125;110;124	1339	2876;2877;2878	5962;5963;5964;5965;5966	5965		5	9606
KAVDALLTHCK	2	0	Unmodified	1254.6754	0.67544174	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			13.366	13.366	3	0.0022503	3890	DP1061-8	87.667	52.899			NaN	NaN	NaN	0	0	Median	24579000	0	24579000	1410	69	1340	2879	5967;5968	5967		2	9606
KAYGGAYDVMSSK	2	0	Oxidation (M)	1391.6391	0.63911582	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3	0			2			12.783	12.783	2;3	1.8857E-07	3193	DP1061-8	131.17	131.17			0.94859	1.0828	0.75442	2	0	Median	182060000	95322000	86737000	1411	87	1341	2880;2881	5969;5970;5971;5972;5973;5974;5975;5976	5976	101	8	9606
KAYGGAYDVMSSK	2	0	Unmodified	1375.6442	0.6442012	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			14.514	14.514	2;3	0.0050712	5356	DP1061-8	108.72	82.6			NaN	NaN	NaN	0	0	Median	31459000	11032000	20427000	1412	87	1341	2882;2883	5977;5978;5979	5977		3	9606
KAYVEANQMLGDLIK	2	0	Oxidation (M)	1707.8866	0.88655673	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		2				17.165	17.165	2;3	7.0436E-09	8548	DP1061-7	138.87	94.571			0.93515	1.0519	3.0887	2	0	Median	224760000	120380000	104380000	1413	116	1342	2884;2885	5980;5981;5982;5983;5984;5985;5986	5983	145	7	9606
KAYVEANQMLGDLIK	2	0	Unmodified	1691.8916	0.89164211	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				19.044	19.044	3	0.00036268	10595	DP1061-7	96.247	45.441			NaN	NaN	NaN	0	0	Median	6264400	0	6264400	1414	116	1342	2886	5987;5988	5987		2	9606
KDCEVVMMIGLPGAGK	2	0	2 Oxidation (M)	1735.8307	0.83069811	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	2	1	2	0		1				16.44	16.44	2	0.015083	7592	DP1061-7	71.558	45.441			NaN	NaN	NaN	0	0	Median	0	0	0	1415	281	1343	2887	5989	5989	352;353	1	9606
KDDEVQVVR	1	1	Unmodified	1086.5669	0.56693715	227	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	1	5	0					1	12.494	12.494	2	0.0016548	3032	DP1061-10	128.6	65.068			NaN	NaN	NaN	0	0	Median	0	0	0	1416	227	1344	2888	5990	5990		1	9606
KDLPPLLLK	2	0	Unmodified	1035.6692	0.66921738	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	2	0		1				16.815	16.815	2	0.041915	8094	DP1061-7	101.9	63.104			NaN	NaN	NaN	0	0	Median	13964000	0	13964000	1417	485	1345	2889	5991	5991		1	9606
KDVDGAYMTK	2	0	Unmodified	1126.5329	0.53285983	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					12.517	12.517	2	0.036726	2145	DP1061-6	93.561	30.134		+	NaN	NaN	NaN	0	0	Median	2719400	2719400	0	1418	80	1346	2890	5992	5992		1	9606
KEAQELSQNSAIK	2	0	Unmodified	1444.7522	0.75217174	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				12.539	12.539	3	0.024936	2704	DP1061-7	58.268	31.299			NaN	NaN	NaN	0	0	Median	19563000	0	19563000	1419	508	1347	2891	5993	5993		1	9606
KEQELTQAIK	2	0	Unmodified	1186.6558	0.65575216	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2.5	0.5		1	1			12.864	12.864	2	0.019174	3318	DP1061-8	109.29	40.919			NaN	NaN	NaN	0	0	Median	12406000	0	12406000	1420	491	1348	2892;2893	5994;5995;5996	5995		3	9606
KESYSIYVYK	2	0	Unmodified	1278.6496	0.64960415	96	Q16778;P33778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	5	0					1	24.123	24.123	2	0.04687	12842	DP1061-10	87.149	44.958			NaN	NaN	NaN	0	0	Median	0	0	0	1421	96	1349	2894	5997	5997		1	9606
KESYSVYVYK	2	0	Unmodified	1264.634	0.63395408	57	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	1	5	0					1	23.65	23.65	2	0.034361	11748	DP1061-10	95.775	64.245			NaN	NaN	NaN	0	0	Median	26354000	0	26354000	1422	57	1350	2895	5998	5998		1	9606
KFEEEGNPYYSSAR	1	1	Unmodified	1675.7478	0.74781464	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			2	2		14.97	14.97	2;3	1.6985E-47	5783	DP1061-8	231.74	181.39			0.80137	0.83452	8.7469	4	0	Median	170020000	93044000	76974000	1423	501	1351	2896;2897;2898;2899	5999;6000;6001;6002;6003;6004;6005;6006;6007;6008;6009;6010;6011;6012	6001		14	9606
KFGDPVVQSDMK	2	0	Oxidation (M)	1365.6599	0.65985126	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			13.686	13.686	3	0.015269	4242	DP1061-8	71.806	45.394			NaN	NaN	NaN	0	0	Median	44355000	0	44355000	1424	108	1352	2900	6013;6014	6014	130	2	9606
KFGYVDFESAEDLEK	2	0	Unmodified	1775.8254	0.82539626	134	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0.816		2	2	2		18.856	18.856	2;3	3.0143E-05	10412	DP1061-7	127.03	97.099			NaN	NaN	NaN	0	0	Median	96139000	0	96139000	1425	134	1353	2901;2902;2903;2904;2905;2906	6015;6016;6017;6018;6019;6020;6021;6022;6023;6024;6025	6018		11	9606
KFQPLFGDFAAEK	2	0	Unmodified	1496.7664	0.76636524	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	1	4	0				1		18.825	18.825	3	0.02923	10724	DP1061-9	55.98	17.534			NaN	NaN	NaN	0	0	Median	5321500	0	5321500	1426	350	1354	2907	6026;6027	6027		2	9606
KFSKEEPVSSGPEEAVGK	3	0	Unmodified	1903.9527	0.95272204	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	2	3	0			2			13.349	13.349	3	0.0018322	3870	DP1061-8	99.813	57.901			NaN	NaN	NaN	0	0	Median	0	0	0	1427	31	1355	2908;2909	6028;6029	6028		2	9606
KGDEVDGVDEVAK	2	0	Unmodified	1359.6518	0.65178899	104	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				13.38	13.38	2	0.012134	3754	DP1061-7	88.338	47.986			NaN	NaN	NaN	0	0	Median	0	0	0	1428	104	1356	2910	6030	6030		1	9606
KGEKDIPGLTDTTVPR	2	1	Unmodified	1725.9261	0.92611336	246	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	2	5	0					2	25.118	25.118	3	0.0029237	14162	DP1061-10	91.657	58.391			NaN	NaN	NaN	0	0	Median	13271000	0	13271000	1429	246	1357	2911;2912	6031;6032	6031		2	9606
KGHAVGDIPGVR	1	1	Unmodified	1204.6677	0.66765425	237	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	1	5	0					1	25.428	25.428	3	0.01828	14194	DP1061-10	61.419	45.88			NaN	NaN	NaN	0	0	Median	23173000	0	23173000	1430	237	1358	2913	6033;6034	6033		2	9606
KGLTPSQIGVILR	1	1	Unmodified	1380.8453	0.84528426	239	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	26.075	26.075	3	0.00054375	14876	DP1061-10	97.463	76.623			NaN	NaN	NaN	0	0	Median	5890000	0	5890000	1431	239	1359	2914	6035;6036	6035		2	9606
KGTHFVQLCCQR	1	1	Unmodified	1532.734	0.73403603	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		13.59	13.59	2;3	2.8918E-08	4074	DP1061-8	140.78	121			0.94051	0.95069	1.5098	3	0	Plateau	207270000	104700000	102570000	1432	501	1360	2915;2916;2917	6037;6038;6039;6040;6041;6042	6038		5	9606
KHHLQPENPGPGGAAPSLEQNR	1	1	Unmodified	2333.1625	0.16248909	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	0.816		2	2	2		13.982	13.982	2;3;4	7.0612E-09	4436	DP1061-7	134.83	117.68			NaN	NaN	NaN	0	0	Median	230540000	0	230540000	1433	339	1361	2918;2919;2920;2921;2922;2923	6043;6044;6045;6046;6047;6048;6049;6050;6051;6052;6053;6054;6055	6044		13	9606
KHIMGQNVADYMR	1	1	2 Oxidation (M)	1593.7392	0.73918099	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	1	4	0				1		12.592	12.592	3	0.023091	2861	DP1061-9	73.219	43.916			NaN	NaN	NaN	0	0	Median	26549000	0	26549000	1434	185	1362	2924	6056	6056	237;238	1	9606
KHPSSPECLVSAQK	2	0	Unmodified	1566.7824	0.78242601	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	1	1	0	1					12.766	12.766	3	0.019588	2482	DP1061-6	61.657	25.657			NaN	NaN	NaN	0	0	Median	2282400	0	2282400	1435	346	1363	2925	6057	6057		1	9606
KIAPYVAHNFSK	2	0	Unmodified	1373.7456	0.74557022	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.33	0.471		2	1			13.831	13.831	2;3	0.0003299	4238	DP1061-7	94.402	94.402			0.88299	0.99327	4.6177	3	0	Median	221890000	113340000	108550000	1436	116	1364	2926;2927;2928	6058;6059;6060;6061;6062;6063;6064;6065	6061		8	9606
KIHNANPELTDGQIQAMLR	1	1	Oxidation (M)	2164.1059	0.10588542	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.33	0.471	2	1				15.753	15.753	3;4	4.1552E-06	5632	DP1061-6	85.046	65.331			0.75655	0.82162	20.587	3	0	Median	65104000	36964000	28140000	1437	309	1365	2929;2930;2931	6066;6067;6068;6069	6068	388	4	9606
KIMSSPLSK	2	0	Oxidation (M)	1005.5529	0.55286699	227	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	1	1	5	0					1	12.418	12.418	2	0.002907	2891	DP1061-10	87.806	26.247			15.516	16.445	NaN	1	0	Median	28105000	1745900	26359000	1438	227	1366	2932	6070	6070	290	1	9606
KINSSPNVNTTASGVEDLNIIQVTIPDDDNER	1	1	Unmodified	3467.7016	0.70159932	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				20.234	20.234	3	0.00014259	12129	DP1061-7	62.383	29.829			NaN	NaN	NaN	0	0	Median	5767200	0	5767200	1439	269	1367	2933	6071	6071		1	9606
KIVDQIRPDR	1	2	Unmodified	1238.7095	0.70951906	130;440	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	2	4	0				1		12.937	12.937	3	0.019802	3432	DP1061-9	82.287	44.606			NaN	NaN	NaN	0	0	Median	8739600	0	8739600	1440	130;440	1368	2934	6072	6072		1	9606
KKEENSTEEQALEDQNAK	3	0	Unmodified	2089.9764	0.97637061	507	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	2	3	0			1			12.591	12.591	3	0.0083969	2943	DP1061-8	88.283	57.747			NaN	NaN	NaN	0	0	Median	5438100	0	5438100	1441	507	1369	2935	6073	6073		1	9606
KKHHLQPENPGPGGAAPSLEQNR	2	1	Unmodified	2461.2575	0.25745211	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	3.5	0.5			1	1		13.935	13.935	4	0.0074882	4332	DP1061-9	65.111	35.939			NaN	NaN	NaN	0	0	Median	20810000	0	20810000	1442	339	1370	2936;2937	6074;6075;6076	6076		3	9606
KKPNPVEEEPSR	2	1	Unmodified	1408.731	0.73104237	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1.5	0.5	1	1				12.407	12.407	3	0.017839	1950	DP1061-6	80.871	32.431			NaN	NaN	NaN	0	0	Median	18717000	0	18717000	1443	182	1371	2938;2939	6077;6078	6077		2	9606
KLAVNMVPFPR	1	1	Unmodified	1270.722	0.72199801	265;98;328;81;320;368;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	1	3.5	0.5			1	1		17.781	17.781	3	0.010061	9346	DP1061-9	55.084	40.305			3.3259	3.4143	NaN	1	0	Median	19803000	3453800	16349000	1444	98;265;328;320;368;81;471	1372	2940;2941	6079;6080	6080		2	9606
KLAVNMVPFPR	1	1	Oxidation (M)	1286.7169	0.71691263	265;98;328;81;320;368;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	1	1	4	0				1		16.327	16.327	3	0.0038397	7391	DP1061-9	70.412	70.412			3.6931	3.7913	NaN	1	0	Median	59829000	10432000	49397000	1445	98;265;328;320;368;81;471	1372	2942	6081;6082;6083;6084	6084	84	4	9606
KLDAEDVIGSR	1	1	Unmodified	1201.6303	0.63026569	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	2					15.391	15.391	2;3	0.041755	5117	DP1061-6	59.155	21.438			NaN	NaN	NaN	0	0	Median	7654000	0	7654000	1446	182	1373	2943;2944	6085;6086	6086		2	9606
KLDELYGTWR	1	1	Unmodified	1279.6561	0.65608651	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				1		17.446	17.446	2	0.0018383	8862	DP1061-9	122.96	88.709			NaN	NaN	NaN	0	0	Median	100450000	0	100450000	1447	162	1374	2945	6087;6088	6088		2	9606
KLDPELHLDIK	2	0	Unmodified	1319.7449	0.74490152	305	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	4	0				1		16.23	16.23	3	0.0034413	7368	DP1061-9	82.505	55.074			NaN	NaN	NaN	0	0	Median	13118000	0	13118000	1448	305	1375	2946	6089	6089		1	9606
KLDPGSEETQTLVR	1	1	Unmodified	1571.8155	0.81550028	147	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	4	0				1		14.881	14.881	3	0.0011682	5616	DP1061-9	72.815	40.988			0.54988	0.56449	NaN	1	0	Median	22547000	10476000	12071000	1449	147	1376	2947	6090;6091	6091		2	9606
KLDVTIEPSEEPLFPADELYGIVGANLK	2	0	Unmodified	3056.5958	0.59578425	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	4	0				2		23.712	23.712	3	0.024769	16476	DP1061-9	29.603	29.603			0.15337	0.16047	NaN	1	0	Median	4006800	3406100	600710	1450	501	1377	2948;2949	6092;6093	6092		2	9606
KLETEETVPETDVETK	2	0	Unmodified	1846.9048	0.9047688	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				14.562	14.562	2	1.5148E-07	5204	DP1061-7	170.11	132.15			NaN	NaN	NaN	0	0	Median	5507100	0	5507100	1451	289	1378	2950	6094;6095;6096	6094		3	9606
KLETNPDIKPSNVEPMEK	3	0	Oxidation (M)	2084.046	0.0459705	475	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	1	2	3	0			1			13.918	13.918	3	0.049363	4631	DP1061-8	65.105	29.233			NaN	NaN	NaN	0	0	Median	0	0	0	1452	475	1379	2951	6097	6097		1	9606
KLGAGEGGEASVSPEK	2	0	Unmodified	1514.7577	0.75765105	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	4	0				1		12.548	12.548	2	0.00045278	2794	DP1061-9	110.51	69.393			NaN	NaN	NaN	0	0	Median	2858900	0	2858900	1453	318	1380	2952	6098;6099	6098		2	9606
KLGVQTVAVYSEADR	1	1	Unmodified	1634.8628	0.86278482	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.25	0.433			3	1		16.077	16.077	2;3	0.0025868	6802	DP1061-8	108.68	73.02			0.74217	0.76189	NaN	1	0	Median	36209000	13251000	22958000	1454	455	1381	2953;2954;2955;2956	6100;6101;6102;6103	6102		4	9606
KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR	1	1	Unmodified	4242.1822	0.18216849	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1		1		1		22.349	22.349	4	6.7711E-08	11279	DP1061-9	64.645	48.672			NaN	NaN	NaN	0	0	Median	14216000	0	14216000	1455	339	1382	2957;2958	6104;6105;6106	6106		3	9606
KLHYNEGLNIK	2	0	Unmodified	1327.7248	0.72483478	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4	0				1		14.147	14.147	3	0.034913	4669	DP1061-9	52.693	6.3404			NaN	NaN	NaN	0	0	Median	8465600	0	8465600	1456	173	1383	2959	6107;6108	6108		2	9606
KLLMMAGIDDCYTSAR	1	1	2 Oxidation (M)	1875.8529	0.85289012	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	1	4	0				2		15.909	15.909	2;3	1.0347E-07	6892	DP1061-9	145.94	124.03			NaN	NaN	NaN	0	0	Median	35575000	0	35575000	1457	123	1384	2960;2961	6109;6110;6111	6110	169;170	3	9606
KLMDEVIK	2	0	Oxidation (M)	990.54197	0.54196796	444	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	1	1	4	0				1		12.821	12.821	2	0.017603	3149	DP1061-9	72.879	10.917			NaN	NaN	NaN	0	0	Median	3444400	0	3444400	1458	444	1385	2962	6112	6112	530	1	9606
KLPAIALDLLR	1	1	Unmodified	1221.7809	0.78089309	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				20.315	20.315	2	0.025046	12282	DP1061-7	94.409	55.156			NaN	NaN	NaN	0	0	Median	3613800	0	3613800	1459	466	1386	2963	6113	6113		1	9606
KLSELERPHK	2	1	Unmodified	1235.6986	0.69862003	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	2	2	0		1				12.408	12.408	3	0.0085347	2502	DP1061-7	93.111	38.694			NaN	NaN	NaN	0	0	Median	21265000	0	21265000	1460	334	1387	2964	6114	6114		1	9606
KLSVACFYGGTPYGGQFER	1	1	Unmodified	2136.0099	0.0098597649	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				18.881	18.881	3	0.038521	10360	DP1061-7	52.498	24.783			NaN	NaN	NaN	0	0	Median	7588800	0	7588800	1461	508	1388	2965	6115	6115		1	9606
KLTQTSGETTHTDKVPGGEDK	3	0	Unmodified	2228.0921	0.092069069	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1	0	1					12.421	12.421	4	0.0087573	1952	DP1061-6	70.907	39.487			NaN	NaN	NaN	0	0	Median	8679700	0	8679700	1462	182	1389	2966	6116	6116		1	9606
KMEENGNMPTK	2	0	Oxidation (M)	1293.5693	0.56932169	411	Q8N140	EID3	EP300-interacting inhibitor of differentiation 3	yes	yes	0	1	1	2	0		1				13.297	13.297	2	0.02387	3589	DP1061-7	64.654	37.606			NaN	NaN	NaN	0	0	Median	2438400	0	2438400	1463	411	1390	2967	6117	6117	512	1	9606
KNIVQHTTDSSLEEK	2	0	Unmodified	1727.869	0.86899241	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2	0		1				12.573	12.573	3	0.034636	2782	DP1061-7	55.213	29.089			NaN	NaN	NaN	0	0	Median	5573800	0	5573800	1464	491	1391	2968	6118	6118		1	9606
KPASGPGAVVRPPK	2	1	Unmodified	1359.7987	0.79866842	483	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	2	3	0			1			12.435	12.435	3	0.011609	2709	DP1061-8	82.925	60.879			NaN	NaN	NaN	0	0	Median	16946000	0	16946000	1465	483	1392	2969	6119;6120	6119		2	9606
KPELVISYLPPGMASK	2	0	Oxidation (M)	1744.9433	0.94334333	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	1	2	0		1				17.669	17.669	3	0.055671	9301	DP1061-7	42.095	25.956			0.95005	1.0687	NaN	1	0	Median	17498000	10346000	7152800	1466	269	1393	2970	6121	6121		1	9606
KPEMFETAIK	2	0	Oxidation (M)	1208.6111	0.61111015	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	1	2	0		1				13.849	13.849	2	0.013301	4265	DP1061-7	74.165	36.353			NaN	NaN	NaN	0	0	Median	11737000	0	11737000	1467	269	1394	2971	6122;6123	6122	337	2	9606
KPHIYYGSLEEKER	2	1	Unmodified	1747.8893	0.88933392	46	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	2	3	0			1			13.861	13.861	4	0.020766	4640	DP1061-8	64.244	38.916			NaN	NaN	NaN	0	0	Median	11707000	0	11707000	1468	46	1395	2972	6124	6124		1	9606
KPIPLENPKEK	3	0	Unmodified	1291.75	0.7499869	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	2	2	0		1				12.41	12.41	3	0.00020266	2503	DP1061-7	130.1	81.117			NaN	NaN	NaN	0	0	Median	19718000	0	19718000	1469	428	1396	2973	6125	6125		1	9606
KPIPLQDQTVRDEK	2	1	Unmodified	1665.905	0.90498399	467	Q9BRR8	GPATCH1	G patch domain-containing protein 1	yes	yes	0	0	2	2	0		1				12.905	12.905	3	0.0028132	3117	DP1061-7	93.649	56.036			NaN	NaN	NaN	0	0	Median	3524600	0	3524600	1470	467	1397	2974	6126;6127	6126		2	9606
KPITTGGVTYR	1	1	Unmodified	1191.6612	0.66117189	332	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	4	0				2		12.989	12.989	2;3	0.00049292	3319	DP1061-9	111.52	73.249			0.86408	0.88704	NaN	1	0	Median	24523000	6502700	18020000	1471	332	1398	2975;2976	6128;6129;6130;6131	6131		4	9606
KPNPLANSNTSGYSESK	2	0	Unmodified	1792.8592	0.85915601	338	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	1	1	0	1					13.131	13.131	3	0.0082918	2791	DP1061-6	72.583	33.42			NaN	NaN	NaN	0	0	Median	2610900	0	2610900	1472	338	1399	2977	6132;6133	6133		2	9606
KPPLLNNADSVQAK	2	0	Unmodified	1493.8202	0.82019173	104	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				13.882	13.882	3	0.03655	4325	DP1061-7	53.136	25.987			NaN	NaN	NaN	0	0	Median	8965500	0	8965500	1473	104	1400	2978	6134	6134		1	9606
KPTSQIPETK	2	0	Unmodified	1127.6186	0.61863837	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2.5	0.5		1	1			12.399	12.399	2	0.0014923	2454	DP1061-7	125.68	74.979			NaN	NaN	NaN	0	0	Median	42781000	0	42781000	1474	466	1401	2979;2980	6135;6136;6137	6135		3	9606
KPVGEVHSQFSTGHANSPCTIIIGK	2	0	Unmodified	2663.349	0.34896923	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		2				15.473	15.473	3;4	0.001277	6228	DP1061-7	75.868	59.772			NaN	NaN	NaN	0	0	Median	56253000	0	56253000	1475	182	1402	2981;2982	6138;6139;6140	6138		3	9606
KPWQLQGEVTAQK	2	0	Unmodified	1511.8096	0.80962704	30	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2	0		1				15.35	15.35	2	0.051909	6115	DP1061-7	73.951	29.088			NaN	NaN	NaN	0	0	Median	0	0	0	1476	30	1403	2983	6141	6141		1	9606
KQEIFYTAIVNR	1	1	Unmodified	1480.8038	0.80381338	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		2				17.18	17.18	2;3	0.0002988	8515	DP1061-7	112.44	75.11			NaN	NaN	NaN	0	0	Median	54747000	0	54747000	1477	512	1404	2984;2985	6142;6143;6144	6143		3	9606
KQGTIFLAGPPLVK	2	0	Unmodified	1467.8813	0.88133542	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.2	0.4			4	1		18.186	18.186	2;3	0.0023829	8703	DP1061-8	121.02	121.02			0.73847	0.83775	6.9586	5	0	Median	205360000	111610000	93749000	1478	501	1405	2986;2987;2988;2989;2990	6145;6146;6147;6148;6149;6150;6151;6152;6153	6148		8	9606
KQISNLQQSISDAEQR	1	1	Unmodified	1843.9388	0.93880331	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					15.825	15.825	3	0.0022365	5647	DP1061-6	80.609	45.789		+	NaN	NaN	NaN	0	0	Median	4740900	4740900	0	1479	80	1406	2991	6154;6155;6156	6155		3	9606
KQMVIDVLHPGK	2	0	Oxidation (M)	1379.7595	0.75950572	250	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	5	0					3	25.763	25.763	3	0.0031877	14642	DP1061-10	96.82	71.119			NaN	NaN	NaN	0	0	Median	35281000	0	35281000	1480	250	1407	2992;2993;2994	6157;6158;6159	6159	309	3	9606
KQNNFSLAMK	2	0	Oxidation (M)	1195.6019	0.60194245	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	1	0	1					12.794	12.794	2	0.026371	2454	DP1061-6	64.841	12.845			NaN	NaN	NaN	0	0	Median	2529300	0	2529300	1481	271	1408	2995	6160;6161	6161	342	2	9606
KQVNYEVDR	1	1	Unmodified	1149.5778	0.57783619	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.489	12.489	2	2.2975E-09	2085	DP1061-6	155.58	83.707			0.766	0.83188	NaN	1	0	Median	49134000	28418000	20716000	1482	309	1409	2996	6162;6163;6164;6165	6163		4	9606
KSAEPSANTTLVSETEEEGSVPAFGAAAK	2	0	Unmodified	2877.388	0.38797632	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	4	0				1		17.802	17.802	3	1.3188E-10	9324	DP1061-9	133.61	102.77			NaN	NaN	NaN	0	0	Median	10168000	0	10168000	1483	318	1410	2997	6166;6167;6168;6169	6166		4	9606
KSEDGTPAEDGTPAATGGSQPPSMGR	1	1	Oxidation (M)	2516.1085	0.10852377	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	1	2.5	1.12	1	1	1	1		12.943	12.943	3	4.7058E-09	3409	DP1061-8	127.94	99.051			NaN	NaN	NaN	0	0	Median	26419000	0	26419000	1484	466	1411	2998;2999;3000;3001	6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181	6180	564	12	9606
KSEDGTPAEDGTPAATGGSQPPSMGR	1	1	Unmodified	2500.1136	0.11360915	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	3	0			2			14.161	14.161	3	0.00057216	4958	DP1061-8	80.02	42.62			NaN	NaN	NaN	0	0	Median	0	0	0	1485	466	1411	3002;3003	6182;6183	6183		2	9606
KSFNDDAMLIEK	2	0	Oxidation (M)	1425.681	0.68098063	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0			3			15.408	15.408	2;3	0.00015962	6197	DP1061-8	113.38	72.096			0.84381	0.96317	6.3648	3	0	Median	101460000	50141000	51317000	1486	455	1412	3004;3005;3006	6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195	6192	540	12	9606
KSFNDDAMLIEK	2	0	Unmodified	1409.6861	0.68606601	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			16.544	16.544	2	0.018193	7242	DP1061-8	97.214	61.703			0.93725	1.0698	NaN	1	0	Median	11486000	6655200	4830800	1487	455	1412	3007	6196	6196		1	9606
KSGLQTDYATEK	2	0	Unmodified	1339.662	0.66195975	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				12.631	12.631	2	0.0041338	2819	DP1061-7	127.87	59.497			NaN	NaN	NaN	0	0	Median	0	0	0	1488	182	1413	3008	6197	6197		1	9606
KSQVGAIIITPTR	1	1	Unmodified	1382.8245	0.82454882	421	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	1	2	0		1				26.825	26.825	3	0.054655	19261	DP1061-7	39.581	17.925			NaN	NaN	NaN	0	0	Median	3190800	3190800	0	1489	421	1414	3009	6198	6198		1	9606
KSSADTEFSDECTTAER	1	1	Unmodified	1932.8007	0.80071443	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	1	1.67	0.471	1	2				13.653	13.653	3	0.00051674	4130	DP1061-7	104.03	73.483			NaN	NaN	NaN	0	0	Median	7353900	0	7353900	1490	497	1415	3010;3011;3012	6199;6200;6201;6202	6202		4	9606
KTCTTVAFTQVNSEDKGALAK	3	0	Unmodified	2268.142	0.14199615	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	2	4.5	0.5				1	1	14.878	14.878	3	1.0007E-11	5604	DP1061-9	143.95	101.37			NaN	NaN	NaN	0	0	Median	7727500	0	7727500	1491	242	1416	3013;3014	6203;6204;6205;6206	6206		4	9606
KTVGVEPAADGK	2	0	Unmodified	1170.6245	0.62445203	187	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	1	5	0					1	12.418	12.418	2	0.014163	2938	DP1061-10	101.39	67.135			NaN	NaN	NaN	0	0	Median	5918700	0	5918700	1492	187	1417	3015	6207;6208	6208		2	9606
KVACIGAWHPAR	1	1	Unmodified	1364.7136	0.71355858	169	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	1	4	0				1		14.12	14.12	3	0.015675	4559	DP1061-9	62.799	40.113			NaN	NaN	NaN	0	0	Median	110790000	0	110790000	1493	169	1418	3016	6209;6210	6209		2	9606
KVNNADDFPNLFR	1	1	Unmodified	1548.7685	0.76849051	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	1.01	14	1	1	2		24.157	24.157	2;3	4.9060000000000004E-24	8403	DP1061-6	174.77	147.8			0.76503	0.83083	10.972	8	0	Median	234080000	130550000	103540000	1494	309	1419	3017;3018;3019;3020;3021;3022;3023;3024;3025;3026;3027;3028;3029;3030;3031;3032;3033;3034	6211;6212;6213;6214;6215;6216;6217;6218;6219;6220;6221;6222;6223;6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234;6235;6236;6237;6238;6239;6240	6212		29	9606
KVPQVSTPTLVEVSR	1	1	Unmodified	1638.9305	0.93047046	13	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	1	2	0.816	1	1	1			16.641	16.641	3	0.0010491	7603	DP1061-7	88.768	56.616		+	NaN	NaN	NaN	0	0	Median	32338000	32338000	0	1495	13	1420	3035;3036;3037	6241;6242;6243;6244	6242		4	9606
KVTFGLNR	1	1	Unmodified	933.5396	0.53960019	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				14.238	14.238	2	0.012835	4695	DP1061-7	111.65	74.489			242.9	261.07	NaN	1	0	Median	695350000	2884600	692460000	1496	339	1421	3038	6245;6246	6246		2	9606
KVVNPLFEK	2	0	Unmodified	1072.6281	0.62808085	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		15.048	15.048	2	0.0066597	5957	DP1061-9	120.99	82.197			NaN	NaN	NaN	0	0	Median	29706000	0	29706000	1497	242	1422	3039	6247	6247		1	9606
KWQQLQAK	2	0	Unmodified	1028.5767	0.57671398	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	1	0	1					12.751	12.751	2	0.026543	2423	DP1061-6	115.46	77.901			NaN	NaN	NaN	0	0	Median	3760200	0	3760200	1498	387	1423	3040	6248	6248		1	9606
LAAAILGGVDQIHIKPGAK	2	0	Unmodified	1871.0993	0.09926712	136	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		17.528	17.528	3	6.0639E-13	8948	DP1061-9	163.9	145.07			NaN	NaN	NaN	0	0	Median	22474000	0	22474000	1499	136	1424	3041	6249;6250	6250		2	9606
LAADDFR	0	1	Unmodified	806.39227	0.39226725	17;7;15;92	CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;CON__A2A4G1;Q04695;CON__Q6IFX2;CON__P19012;P19012;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__P08730-1;Q7Z3Y7;P13646;CON__Q148H6;CON__Q7Z3Y7;CON__ENSEMBL:ENSP00000377550;Q2M2I5;CON__Q2M2I5;CON__A2AB72;CON__Q497I4;CON__O76014;CON__O76015;CON__Q9UE12;CON__O76013;CON__A2A5Y0;CON__Q14525;CON__REFSEQ:XP_986630;O76014;Q14525;O76015;Q14532;CON__Q15323;Q92764;Q15323;O76013;CON__Q92764;CON__Q14532;P05783	KRT14;KRT17;KRT15;KRT16;KRT10;KRT28;KRT13;KRT24;KRT37;KRT33B;KRT38;KRT32;KRT35;KRT31;KRT36;KRT18	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 24;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha6;Keratin, type I cytoskeletal 18	no	no	0	0	0	3	1.41	1	1	1	1	1	15.046	15.046	2	0.00052868	5740	DP1061-9	108.98	56.683		+	0.51251	0.52372	169.24	2	0	Median	445640000	415860000	29777000	1500	7;15;17;92	1425	3042;3043;3044;3045;3046	6251;6252;6253;6254;6255;6256;6257;6258;6259;6260;6261	6261		11	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK	1	0	Unmodified	3722.1951	0.19506631	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	5	0					1	17.663	17.663	3	1.4521E-09	7301	DP1061-10	112.85	102.22			NaN	NaN	NaN	0	0	Median	4225400	0	4225400	1501	95	1426	3047	6262;6263;6264;6265	6265		4	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK	2	0	Unmodified	4117.4483	0.44832088	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		17.086	17.086	4	6.7738E-09	8480	DP1061-9	100.7	96.745			NaN	NaN	NaN	0	0	Median	6026200	0	6026200	1502	95	1427	3048	6266	6266		1	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK	3	0	Unmodified	4245.5433	0.5432839	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	2.25	1.64	2	1			1	15.97	15.97	3;4	3.6466000000000003E-31	5748	DP1061-6	162.1	162.1			NaN	NaN	NaN	0	0	Median	50225000	0	50225000	1503	95	1428	3049;3050;3051;3052	6267;6268;6269;6270;6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281;6282	6273		16	9606
LAALEEQR	0	1	Unmodified	928.49779	0.49779495	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			13.773	13.773	2	0.021287	4439	DP1061-8	89.752	18.41			NaN	NaN	NaN	0	0	Median	26420000	0	26420000	1504	29	1429	3053	6283	6283		1	9606
LAATNALLNSLEFTK	1	0	Unmodified	1604.8774	0.87737225	344	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				21.359	21.359	2	0.0098696	13540	DP1061-7	83.243	40.159			NaN	NaN	NaN	0	0	Median	2807900	0	2807900	1505	344	1430	3054	6284	6284		1	9606
LAAVQLLQFLAPK	1	0	Unmodified	1410.8599	0.8598717	520	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				24.003	24.003	2	0.00016951	16525	DP1061-7	153.05	69.162			NaN	NaN	NaN	0	0	Median	2066000	0	2066000	1506	520	1431	3055	6285;6286;6287	6287		3	9606
LACDVDQVTR	0	1	Unmodified	1175.5605	0.56047157	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.324	14.324	2	0.0126	4072	DP1061-6	88.496	18.671			NaN	NaN	NaN	0	0	Median	9649900	0	9649900	1507	271	1432	3056	6288;6289	6289		2	9606
LAELEEALQK	1	0	Unmodified	1142.6183	0.61830402	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	1	0	1					17.215	17.215	2	0.00027517	7323	DP1061-6	143.73	83.616		+	NaN	NaN	NaN	0	0	Median	9057200	9057200	0	1508	18	1433	3057	6290;6291	6291		2	9606
LAELLTQQHGLQCR	0	1	Unmodified	1665.8621	0.86207332	496	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	2	0		1				16.219	16.219	3	1.3828E-05	7311	DP1061-7	138.24	92.446			NaN	NaN	NaN	0	0	Median	16537000	0	16537000	1509	496	1434	3058	6292;6293	6293		2	9606
LAELQEQLR	0	1	Unmodified	1098.6033	0.60332266	143	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	4	0				1		16.058	16.058	2	0.0057329	7049	DP1061-9	111.06	38.271			NaN	NaN	NaN	0	0	Median	4074200	0	4074200	1510	143	1435	3059	6294;6295	6295		2	9606
LAESLLALSQQEELADLPK	1	0	Unmodified	2067.11	0.10995097	474	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				21.809	21.809	2	0.004275	14182	DP1061-7	95.651	55.772			NaN	NaN	NaN	0	0	Median	5291000	0	5291000	1511	474	1436	3060	6296	6296		1	9606
LAETQEEISAEVSAK	1	0	Unmodified	1603.7941	0.79409613	504	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	0	0	0	4	0				1		16.308	16.308	2	0.0069286	7415	DP1061-9	95.417	49.588			NaN	NaN	NaN	0	0	Median	0	0	0	1512	504	1437	3061	6297	6297		1	9606
LAEYQAYIDFEMK	1	0	Oxidation (M)	1635.7491	0.7490602	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	1	0	2	0		1				19.904	19.904	2	0.012004	11725	DP1061-7	80.834	33.532			NaN	NaN	NaN	0	0	Median	0	0	0	1513	347	1438	3062	6298	6298	459	1	9606
LAPDYDALDVANK	1	0	Unmodified	1403.6933	0.69325988	245	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					4	19.63	19.63	2	0.0052249	9232	DP1061-10	105.4	48.223			NaN	NaN	NaN	0	0	Median	0	0	0	1514	245	1439	3063;3064;3065;3066	6299;6300;6301;6302	6302		4	9606
LAQFEPSQR	0	1	Unmodified	1074.5458	0.54580778	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				14.521	14.521	2	0.020884	5164	DP1061-7	83.647	33.52			NaN	NaN	NaN	0	0	Median	18364000	0	18364000	1515	296	1440	3067	6303;6304	6303		2	9606
LAQQQAALLMQQEER	0	1	Oxidation (M)	1771.8887	0.888682	319	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	0	2	0		1				16.204	16.204	2	0.001486	7256	DP1061-7	96.23	56.356			NaN	NaN	NaN	0	0	Median	4855000	0	4855000	1516	319	1441	3068	6305;6306	6306	425	2	9606
LAQVSPELLLASVR	0	1	Unmodified	1494.877	0.87697832	51	O43592	XPOT	Exportin-T	yes	yes	0	0	0	2	0		1				21.662	21.662	2	0.00024696	13945	DP1061-7	116.71	72.404			NaN	NaN	NaN	0	0	Median	7636000	0	7636000	1517	51	1442	3069	6307;6308	6308		2	9606
LASNALQEPSSFR	0	1	Unmodified	1418.7154	0.7153923	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1.5	0.5	1	1				16.55	16.55	2	3.9939E-05	7723	DP1061-7	139.31	79.957			NaN	NaN	NaN	0	0	Median	19489000	0	19489000	1518	497	1443	3070;3071	6309;6310;6311;6312	6312		4	9606
LASTNSSVLGADLPSSMK	1	0	Oxidation (M)	1792.8877	0.88767894	318	Q13428	TCOF1	Treacle protein	yes	yes	0	1	0	4	0				1		16.94	16.94	2	3.2134E-07	8231	DP1061-9	124.51	80.618			NaN	NaN	NaN	0	0	Median	6088200	0	6088200	1519	318	1444	3072	6313;6314	6314	422	2	9606
LASTNSSVLGADLPSSMK	1	0	Unmodified	1776.8928	0.89276432	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0				1		18.253	18.253	2	0.016826	9956	DP1061-9	84.173	44.295			NaN	NaN	NaN	0	0	Median	0	0	0	1520	318	1444	3073	6315	6315		1	9606
LASTNSSVLGADLPSSMKEK	2	0	Oxidation (M)	2050.0252	0.025235058	318	Q13428	TCOF1	Treacle protein	yes	yes	0	1	1	4	0				1		15.62	15.62	3	0.0050941	6477	DP1061-9	87.323	43.409			NaN	NaN	NaN	0	0	Median	11388000	0	11388000	1521	318	1445	3074	6316	6316	422	1	9606
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	1	0	Unmodified	2773.4246	0.4246366	89	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					4	18.462	18.462	3	2.458E-08	8330	DP1061-10	103.78	80.802			NaN	NaN	NaN	0	0	Median	19042000	0	19042000	1522	89	1446	3075;3076;3077;3078	6317;6318;6319;6320;6321;6322	6321		6	9606
LASYLDK	1	0	Unmodified	808.43307	0.43306943	17;19;7;15	CON__P35527;P35527;CON__Q99456;Q99456;CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;CON__A2A4G1;Q04695;CON__P19012;P19012;CON__P08779;P08779;CON__P13645;P13645;CON__P08730-1	KRT9;KRT12;KRT14;KRT17;KRT15;KRT16;KRT10	Keratin, type I cytoskeletal 9;Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10	no	no	0	0	0	2	1	1		1			14.308	14.308	1;2	0.0022575	5102	DP1061-8	124.83	50.86		+	NaN	NaN	NaN	0	0	Median	121220000	121220000	0	1523	19;7;15;17	1447	3079;3080	6323;6324;6325	6325		3	9606
LATVLSGACDGEVR	0	1	Unmodified	1446.7137	0.71367774	514	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	4	0				1		16.536	16.536	2	0.0023523	7770	DP1061-9	96.103	43.313			NaN	NaN	NaN	0	0	Median	5196000	0	5196000	1524	514	1448	3081	6326;6327	6327		2	9606
LAVNMVPFPR	0	1	Oxidation (M)	1158.6219	0.62194961	265;98;328;81;320;368;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	1	0	3.33	0.471			2	1		20.661	20.661	2	0.0033691	9593	DP1061-9	86.794	86.794			3.6781	3.9324	13.125	3	0	Median	194380000	41241000	153140000	1525	98;265;328;320;368;81;471	1449	3082;3083;3084	6328;6329;6330;6331;6332;6333;6334;6335;6336;6337	6337	84	9	9606
LAVNMVPFPR	0	1	Unmodified	1142.627	0.62703499	265;98;328;81;320;368;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q13509;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	3.5	0.5			1	1		19.486	19.486	2	0.00048602	11563	DP1061-9	116.9	116.9			3.9123	4.1972	6.2458	2	0	Median	71458000	14716000	56742000	1526	98;265;328;320;368;81;471	1449	3085;3086	6338;6339;6340;6341;6342;6343;6344;6345	6345		8	9606
LAVSAQSEPAR	0	1	Unmodified	1127.5935	0.59348625	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1.5	0.5	1	1				13.291	13.291	2	0.00034151	2965	DP1061-6	122.96	31.697			NaN	NaN	NaN	0	0	Median	16428000	0	16428000	1527	68	1450	3087;3088	6346;6347;6348;6349	6347		4	9606
LAWEQQEPGER	0	1	Unmodified	1341.6313	0.63132832	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				16.126	16.126	2	0.0044302	7085	DP1061-7	101.3	30.744			NaN	NaN	NaN	0	0	Median	9924100	0	9924100	1528	331	1451	3089	6350;6351;6352	6350		3	9606
LAYIAHPK	1	0	Unmodified	911.52289	0.52288749	190	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	5	0					2	17.803	17.803	2	1.539E-05	11503	DP1061-10	149.06	79.061			NaN	NaN	NaN	0	0	Median	17717000	0	17717000	1529	190	1452	3090;3091	6353;6354;6355;6356	6355		4	9606
LDDHALTGASDSR	0	1	Unmodified	1356.627	0.62697123	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	2	0		1				13.762	13.762	3	1.8317E-05	4227	DP1061-7	147.96	94.927			NaN	NaN	NaN	0	0	Median	10454000	0	10454000	1530	303	1453	3092	6357;6358	6357		2	9606
LDELYGTWR	0	1	Unmodified	1151.5611	0.56112349	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		18.815	18.815	2	0.00049035	10627	DP1061-9	130.56	73.514			NaN	NaN	NaN	0	0	Median	14924000	0	14924000	1531	162	1454	3093	6359;6360	6360		2	9606
LDGLVETPTGYIESLPR	0	1	Unmodified	1858.9676	0.96764382	221	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3.5	0.5			1	1		21.096	21.096	2	5.7691E-11	12690	DP1061-8	184.34	141.71			NaN	NaN	NaN	0	0	Median	24190000	0	24190000	1532	221	1455	3094;3095	6361;6362;6363;6364	6361		4	9606
LDGSMSYSER	0	1	Oxidation (M)	1159.4816	0.48155254	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				12.883	12.883	2	0.016646	3103	DP1061-7	80.755	66.088			NaN	NaN	NaN	0	0	Median	22538000	0	22538000	1533	512	1456	3096	6365;6366	6366	616	2	9606
LDHKFDLMYAK	2	0	Unmodified	1379.6908	0.69075746	264;394;465	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	4	0				1		16.191	16.191	3	0.0017867	7212	DP1061-9	95.618	68.865			NaN	NaN	NaN	0	0	Median	13828000	0	13828000	1534	264;394;465	1457	3097	6367	6367		1	9606
LDKAQIHDLVLVGGSTR	1	1	Unmodified	1821.0108	0.010846043	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			2			17.213	17.213	3	1.4453E-07	7899	DP1061-8	123.4	105.48			NaN	NaN	NaN	0	0	Median	27106000	0	27106000	1535	108	1458	3098;3099	6368;6369;6370;6371	6368		4	9606
LDKSQIHDIVLVGGSTR	1	1	Unmodified	1837.0058	0.005760665	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			16.81	16.81	3	0.0030079	7523	DP1061-8	85.636	50.599			NaN	NaN	NaN	0	0	Median	11245000	0	11245000	1536	113	1459	3100	6372;6373	6372		2	9606
LDKYYMLIR	1	1	Unmodified	1213.6529	0.65291539	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				17.763	17.763	3	0.0044127	9501	DP1061-7	91.867	62.123			NaN	NaN	NaN	0	0	Median	39899000	0	39899000	1537	339	1460	3101	6374;6375;6376	6376		3	9606
LDLAGTLPGSK	1	0	Unmodified	1070.5972	0.59717465	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				17.512	17.512	2	8.5427E-05	9008	DP1061-7	135.55	80.108			NaN	NaN	NaN	0	0	Median	41494000	0	41494000	1538	182	1461	3102;3103	6377;6378;6379;6380	6379		4	9606
LDLLEEK	1	0	Unmodified	858.46985	0.46984887	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.25	1	1		1		16.776	16.776	2	7.4805E-07	7055	DP1061-6	138.37	0			0.80266	0.89722	NaN	1	0	Median	357200000	208170000	149030000	1539	309	1462	3104;3105;3106	6381;6382;6383;6384;6385;6386;6387;6388;6389	6385		9	9606
LDLLGNLPGSK	1	0	Unmodified	1125.6394	0.63937381	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0.816	1	1	1			19.619	19.619	2	0.00032128	11240	DP1061-7	123.96	83.075			NaN	NaN	NaN	0	0	Median	38327000	0	38327000	1540	182	1463	3107;3108;3109	6390;6391;6392;6393;6394;6395	6393		6	9606
LDLPGNLPGSK	1	0	Unmodified	1109.6081	0.60807369	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				17.678	17.678	2	0.01096	9290	DP1061-7	88.134	40.559			NaN	NaN	NaN	0	0	Median	19521000	0	19521000	1541	182	1464	3110	6396;6397	6397		2	9606
LDLTENLTGSK	1	0	Unmodified	1189.619	0.6190323	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2.5	1.12	1	1	1	1		17.37	17.37	2	7.9122E-05	8763	DP1061-7	135.86	57.343			NaN	NaN	NaN	0	0	Median	131090000	0	131090000	1542	182	1465	3111;3112;3113;3114	6398;6399;6400;6401;6402;6403;6404;6405;6406;6407;6408;6409	6403		12	9606
LDLTENLTGSKR	1	1	Unmodified	1345.7201	0.72014333	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		1				15.907	15.907	3	0.0032155	6895	DP1061-7	81.625	46.548			NaN	NaN	NaN	0	0	Median	8909800	0	8909800	1543	182	1466	3115	6410;6411	6410		2	9606
LDNASAFQGAVISPHYDSLLVK	1	0	Unmodified	2344.2063	0.20631097	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.17	0.373		10	2			23.527	23.527	2;3	1.1146000000000001E-103	11677	DP1061-7	279.91	279.91			1.0114	1.0596	28.662	8	0	Median	886150000	462880000	423270000	1544	116	1467	3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127	6412;6413;6414;6415;6416;6417;6418;6419;6420;6421;6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435	6419		24	9606
LDQPGNLPGSNR	0	1	Unmodified	1266.6317	0.63166267	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.587	14.587	2	0.0079978	5227	DP1061-7	89.266	34.154			NaN	NaN	NaN	0	0	Median	20672000	0	20672000	1545	182	1468	3128	6436;6437	6437		2	9606
LDSELKNMQDMVEDYR	1	1	2 Oxidation (M)	2016.8769	0.87685626	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	1.5	0.5	2	2				15.537	15.537	2;3	1.1725E-05	5254	DP1061-6	119.39	101.72		+	NaN	NaN	NaN	0	0	Median	81764000	81764000	0	1546	80	1469	3129;3130;3131;3132	6438;6439;6440;6441;6442;6443;6444;6445	6439	78;79	8	9606
LDSSPSVSSTLAAK	1	0	Unmodified	1361.7038	0.70382456	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0				1		15.336	15.336	2	4.1571E-05	6193	DP1061-9	138.99	79.838			NaN	NaN	NaN	0	0	Median	23727000	0	23727000	1547	318	1470	3133	6446;6447	6447		2	9606
LDSVLLLSSMNLPGGELR	0	1	Oxidation (M)	1929.0241	0.024112846	327	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	1	0	4	0				1		21.604	21.604	2	1.3811E-07	14191	DP1061-9	131.32	96.245			NaN	NaN	NaN	0	0	Median	7956000	0	7956000	1548	327	1471	3134	6448;6449	6449	429	2	9606
LDTMNTTCVDR	0	1	Oxidation (M)	1340.57	0.57004997	300	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	1	0	3	0			1			13.17	13.17	2	0.01963	3665	DP1061-8	82.029	27.421			NaN	NaN	NaN	0	0	Median	0	0	0	1549	300	1472	3135	6450	6450	369	1	9606
LDTSQWPLLLK	1	0	Unmodified	1312.7391	0.73908786	58	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	3	0			1			22.044	22.044	2	0.0023967	13875	DP1061-8	112.11	72.049			NaN	NaN	NaN	0	0	Median	4298100	0	4298100	1550	58	1473	3136	6451;6452;6453;6454	6453		4	9606
LDVGNFSWGSECCTR	0	1	Unmodified	1786.7403	0.7403032	235	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					2	23.195	23.195	2	0.034338	11489	DP1061-10	73.881	51.553			NaN	NaN	NaN	0	0	Median	16007000	0	16007000	1551	235	1474	3137;3138	6455;6456	6455		2	9606
LDVTLGPVPEIGGSEAPAPQNK	1	0	Unmodified	2188.1376	0.1375627	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		19.943	19.943	2	1.7633E-17	12100	DP1061-9	187.08	150.45			NaN	NaN	NaN	0	0	Median	14150000	0	14150000	1552	462	1475	3139	6457;6458;6459	6459		3	9606
LEAQEQAFLAR	0	1	Unmodified	1274.6619	0.66190017	378	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	4	0				1		16.987	16.987	2	0.0015492	8325	DP1061-9	143.04	77.572			NaN	NaN	NaN	0	0	Median	8833400	0	8833400	1553	378	1476	3140	6460;6461	6461		2	9606
LECVEPNCR	0	1	Unmodified	1175.5063	0.50632751	443	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	0	5	0					2	14.104	14.104	2	6.1359E-06	4042	DP1061-10	133.6	104.64			15.668	15.302	NaN	1	0	Median	42263000	2350600	39912000	1554	443	1477	3141;3142	6462;6463;6464;6465;6466	6463		5	9606
LEDLNFPEIK	1	0	Unmodified	1216.634	0.63395408	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				19.463	19.463	2	0.00094942	11116	DP1061-7	143.7	67.965			NaN	NaN	NaN	0	0	Median	14376000	0	14376000	1555	555	1478	3143	6467;6468	6467		2	9606
LEDLNFPEIKR	1	1	Unmodified	1372.7351	0.73506511	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	1	2	0		1				17.698	17.698	3	0.0015014	9405	DP1061-7	90.913	54.496			NaN	NaN	NaN	0	0	Median	12315000	0	12315000	1556	555	1479	3144	6469;6470	6470		2	9606
LEDVLPLAFTR	0	1	Unmodified	1272.7078	0.70778773	375	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	3	0			1			21.245	21.245	2	0.0010979	12798	DP1061-8	118.18	74.407			NaN	NaN	NaN	0	0	Median	6388800	0	6388800	1557	375	1480	3145	6471	6471		1	9606
LEEEIIANIFGR	0	1	Unmodified	1402.7456	0.7456298	570				yes	yes	0	0	0	3	0			1			22.954	22.954	2	0.0017289	14978	DP1061-8	99.688	59.098	+		2.0437	2.2278	NaN	1	0	Median	10976000	3645600	7330000	1558	570	1481	3146	6472;6473	6473		2	9606
LEEGEVAMGR	0	1	Oxidation (M)	1105.5074	0.50737336	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	1	0	1	0	1					13.023	13.023	2	0.028759	2726	DP1061-6	74.92	41.123			NaN	NaN	NaN	0	0	Median	1859800	0	1859800	1559	340	1482	3147	6474	6474	452	1	9606
LEGLTDEINFLR	0	1	Unmodified	1418.7405	0.74054442	14	P05787;CON__P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	4	0				1		21.47	21.47	2	8.714E-08	14059	DP1061-9	142	67.83		+	1.6657	1.7809	NaN	1	0	Median	9318600	3508100	5810400	1560	14	1483	3148	6475;6476	6475		2	9606
LELDDPSK	1	0	Unmodified	915.45493	0.45492709	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.655	14.655	2	0.00063334	4426	DP1061-6	119.29	90.142			0.81868	0.91513	NaN	1	0	Median	18286000	10683000	7602900	1561	34	1484	3149	6477;6478;6479;6480	6478		4	9606
LEMENTYPK	1	0	Oxidation (M)	1139.5169	0.51687542	383	Q68DQ2	CRYBG3	Very large A-kinase anchor protein	yes	yes	0	1	0	3	1		1		1		13.418	13.418	2	0.027362	3787	DP1061-9	76.035	13.376			NaN	NaN	NaN	0	0	Median	10598000	0	10598000	1562	383	1485	3150;3151	6481;6482	6482	483	2	9606
LENDQIESLR	0	1	Unmodified	1215.6095	0.60953025	225	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				15.94	15.94	2	0.033138	6903	DP1061-7	90.15	7.6979			NaN	NaN	NaN	0	0	Median	0	0	0	1563	225	1486	3152	6483	6483		1	9606
LENEIQTYR	0	1	Unmodified	1164.5775	0.57750184	17	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.67	1.7	1	1			1	15.049	15.049	2	0.0011809	4829	DP1061-6	122.13	52.937		+	NaN	NaN	NaN	0	0	Median	144740000	144740000	0	1564	17	1487	3153;3154;3155	6484;6485;6486;6487	6486		4	9606
LEPHKPQQIPIDSTVSFGASTR	1	1	Unmodified	2407.2496	0.24957276	307	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		16.559	16.559	3	0.0041995	7796	DP1061-9	80.277	45.064			NaN	NaN	NaN	0	0	Median	6702400	0	6702400	1565	307	1488	3156	6488;6489	6489		2	9606
LEQELFSGGNTGINFEK	1	0	Unmodified	1881.9109	0.91085723	32	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			19.718	19.718	2	0.023033	10950	DP1061-8	82.069	44.643			NaN	NaN	NaN	0	0	Median	0	0	0	1566	32	1489	3157	6490	6490		1	9606
LEQGGTADGLR	0	1	Unmodified	1115.5571	0.55710075	48	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2.67	0.471		1	2			13.318	13.318	2	0.00036653	3664	DP1061-7	142.98	49.786			NaN	NaN	NaN	0	0	Median	7441400	0	7441400	1567	48	1490	3158;3159;3160	6491;6492;6493;6494	6491		4	9606
LEQQVPVNQVFGQDEMIDVIGVTK	1	0	Oxidation (M)	2701.3633	0.36328189	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	4	0				2		21.12	21.12	2;3	2.0604E-08	13586	DP1061-9	134.33	108.97			NaN	NaN	NaN	0	0	Median	74298000	0	74298000	1568	169	1491	3161;3162	6495;6496;6497;6498;6499	6497	214	5	9606
LEQQVPVNQVFGQDEMIDVIGVTK	1	0	Unmodified	2685.3684	0.36836727	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		22.332	22.332	2	1.7748E-07	15075	DP1061-9	123.58	91.054			NaN	NaN	NaN	0	0	Median	5993400	0	5993400	1569	169	1491	3163	6500;6501;6502	6502		3	9606
LESEGSPETLTNLR	0	1	Unmodified	1544.7682	0.76821574	524	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	0	1					16.86	16.86	2	1.0019E-05	6832	DP1061-6	158.41	92.135			NaN	NaN	NaN	0	0	Median	5836600	0	5836600	1570	524	1492	3164	6503;6504	6504		2	9606
LESENDEYER	0	1	Unmodified	1282.5313	0.53133951	71	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				13.136	13.136	2	0.0033868	3397	DP1061-7	112.11	80.236			NaN	NaN	NaN	0	0	Median	3740300	0	3740300	1571	71	1493	3165	6505;6506	6505		2	9606
LETEETVPETDVETK	1	0	Unmodified	1718.8098	0.80980578	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				15.596	15.596	2	0.0098312	6443	DP1061-7	89.301	49.676			NaN	NaN	NaN	0	0	Median	0	0	0	1572	289	1494	3166	6507	6507		1	9606
LETHMTPEMFR	0	1	2 Oxidation (M)	1422.6272	0.62717092	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	2	0	2	0		1				13.651	13.651	3	0.010015	4043	DP1061-7	69.65	56.693			NaN	NaN	NaN	0	0	Median	14840000	0	14840000	1573	296	1495	3167	6508;6509;6510;6511	6508	364;365	4	9606
LEVDEDFEEDNAAK	1	0	Unmodified	1622.6948	0.69477602	438	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	2	0		1				17.102	17.102	2	0.0084483	8556	DP1061-7	86.114	52.886			NaN	NaN	NaN	0	0	Median	9324400	0	9324400	1574	438	1496	3168	6512;6513	6513		2	9606
LEYKPIK	2	0	Unmodified	889.5273	0.52730417	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				12.992	12.992	2	0.010407	3256	DP1061-7	85.265	27.098			0.67731	0.76191	NaN	1	0	Median	17903000	9973100	7929400	1575	116	1497	3169	6514	6514		1	9606
LEYKPIKK	3	0	Unmodified	1017.6223	0.62226719	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	2	2	0		1				12.397	12.397	2	0.003573	2501	DP1061-7	101.6	52.159			0.85435	0.85864	NaN	1	0	Median	37307000	18630000	18677000	1576	116	1498	3170	6515	6515		1	9606
LFADAVQELLPQYK	1	0	Unmodified	1633.8716	0.87155859	154	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			22.235	22.235	2	0.0028831	14130	DP1061-8	92.611	51.884			NaN	NaN	NaN	0	0	Median	3945000	0	3945000	1577	154	1499	3171	6516	6516		1	9606
LFCVGFTK	1	0	Unmodified	970.49462	0.49462383	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.213	18.213	2	0.0050567	9854	DP1061-9	96.19	65.578			2.4218	2.5316	NaN	1	0	Median	41314000	7991500	33323000	1578	226	1500	3172	6517;6518	6518		2	9606
LFEGNALLR	0	1	Unmodified	1031.5764	0.57637963	188	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	24.159	24.159	2	0.0094059	12283	DP1061-10	101.64	42.662			NaN	NaN	NaN	0	0	Median	25948000	0	25948000	1579	188	1501	3173	6519;6520	6520		2	9606
LFEYGGFPPESNYLFLGDYVDR	0	1	Unmodified	2597.2115	0.21145592	163;233	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	4	0				6		24.709	24.709	2;3	4.6251E-08	18500	DP1061-9	125.54	105.96			NaN	NaN	NaN	0	0	Median	13449000	0	13449000	1580	163;233	1502	3174;3175;3176;3177;3178;3179	6521;6522;6523;6524;6525;6526;6527	6527		7	9606
LFHEVVQAFR	0	1	Unmodified	1244.6666	0.66659162	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2.75	0.829		2	1	1		17.701	17.701	2;3	0.0011211	9242	DP1061-7	114.5	81.267			NaN	NaN	NaN	0	0	Median	65965000	0	65965000	1581	555	1503	3180;3181;3182;3183	6528;6529;6530;6531;6532;6533;6534	6529		7	9606
LFIGGLNVQTSESGLR	0	1	Unmodified	1689.905	0.90498399	312	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	4	0				1		20.241	20.241	2	2.7778E-07	12515	DP1061-9	153.34	82.533			NaN	NaN	NaN	0	0	Median	9805200	0	9805200	1582	312	1504	3184	6535;6536	6536		2	9606
LFIGGLPNYLNDDQVK	1	0	Unmodified	1804.9359	0.93594977	145	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	3	0			1			21.549	21.549	2	0.026181	13354	DP1061-8	75.479	43.149			NaN	NaN	NaN	0	0	Median	9105500	0	9105500	1583	145	1505	3185	6537	6537		1	9606
LFIGGLSFETTDESLR	0	1	Unmodified	1783.8992	0.89922991	103	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		22.079	22.079	2	7.944E-38	14738	DP1061-9	190.36	148.36			14.854	15.881	NaN	1	0	Median	33695000	2192900	31502000	1584	103	1506	3186	6538;6539;6540	6539		3	9606
LFLQGPK	1	0	Unmodified	801.47487	0.47487467	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		16.157	16.157	2	0.00039523	5948	DP1061-6	110.54	71.317			0.9915	1.0388	7.9644	3	0	Plateau	582870000	294370000	288510000	1585	116	1507	3187;3188;3189	6541;6542;6543;6544;6545;6546;6547	6541		7	9606
LFLVNNK	1	0	Unmodified	846.49634	0.49633839	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		16.475	16.475	2	0.0041913	7637	DP1061-9	112.27	78.909			NaN	NaN	NaN	0	0	Median	19225000	0	19225000	1586	360	1508	3190	6548;6549	6549		2	9606
LFQECCPHSTDR	0	1	Unmodified	1548.6449	0.64494625	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			13.477	13.477	2;3	0.00091249	3988	DP1061-8	155.99	130.81			NaN	NaN	NaN	0	0	Median	37039000	0	37039000	1587	232	1509	3191;3192	6550;6551;6552	6551		3	9606
LFSMENWGGATFDVAMR	0	1	2 Oxidation (M)	1962.8604	0.86041834	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	0	2.33	0.471		2	1			20.64	20.64	2;3	2.6212E-12	12531	DP1061-7	142.12	97.253			0.95124	1.0097	10.877	3	0	Median	152340000	76533000	75807000	1588	116	1510	3193;3194;3195	6553;6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564	6555	157;158	12	9606
LFSMENWGGATFDVAMR	0	1	Oxidation (M)	1946.8655	0.86550371	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				21.604	21.604	2	6.9837E-07	13830	DP1061-7	111.31	95.557			1.0588	1.1808	NaN	1	0	Median	5199500	2890400	2309100	1589	116	1510	3196	6565;6566	6565	157;158	2	9606
LFVGGIKEDTEEHHLR	1	1	Unmodified	1878.9588	0.95881047	137	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				2		14.862	14.862	3;4	1.3903E-07	5629	DP1061-9	123.76	0			NaN	NaN	NaN	0	0	Median	55587000	0	55587000	1590	137	1511	3197;3198	6567;6568;6569;6570;6571	6568		5	9606
LFVGNLPADITEDEFKR	1	1	Unmodified	1963.0051	0.005091963	139	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	2	0		1				20.13	20.13	3	2.9526E-08	12043	DP1061-7	132.23	106.77			NaN	NaN	NaN	0	0	Median	9499200	0	9499200	1591	139	1512	3199	6572;6573	6572		2	9606
LFVTNDAATILR	0	1	Unmodified	1332.7402	0.74015049	205	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			19.447	19.447	2	0.0040262	10653	DP1061-8	95.573	64.201			NaN	NaN	NaN	0	0	Median	8226500	0	8226500	1592	205	1513	3200	6574	6574		1	9606
LGAGEGGEASVSPEK	1	0	Unmodified	1386.6627	0.66268803	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	0.707		1	2	1		13.515	13.515	2	5.9589E-06	3814	DP1061-7	130.44	99.638			NaN	NaN	NaN	0	0	Median	59161000	0	59161000	1593	318	1514	3201;3202;3203;3204	6575;6576;6577;6578;6579;6580;6581	6575		7	9606
LGAVFNQVAFPLQYTPR	0	1	Unmodified	1920.0258	0.025767826	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				22.053	22.053	2	0.037098	14403	DP1061-7	73.624	36.296			NaN	NaN	NaN	0	0	Median	1887600	0	1887600	1594	356	1515	3205	6582	6582		1	9606
LGDEDEEIDGDTNK	1	0	Unmodified	1548.6427	0.64274045	105	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	1	0	1					14.558	14.558	2	0.00019909	4393	DP1061-6	119.74	97.75			NaN	NaN	NaN	0	0	Median	0	0	0	1595	105	1516	3206	6583	6583		1	9606
LGEHNIDVLEGNEQFINAAK	1	0	Unmodified	2210.0968	0.096760517	6	CON__P00761			yes	yes	0	0	0	2.67	1.29	4	4	7		3	25.674	25.674	2;3	1.7976E-71	13825	DP1061-10	301.48	267.48		+	NaN	NaN	NaN	0	0	Median	280410000	280410000	0	1596	6	1517	3207;3208;3209;3210;3211;3212;3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223;3224	6584;6585;6586;6587;6588;6589;6590;6591;6592;6593;6594;6595;6596;6597;6598;6599;6600;6601;6602;6603;6604;6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620;6621;6622;6623;6624;6625;6626;6627;6628;6629;6630;6631;6632;6633;6634;6635;6636	6584		53	
LGEYGFQNALIVR	0	1	Unmodified	1478.7882	0.78816332	13	CON__P02769			yes	yes	0	0	0	3	0			1			20.29	20.29	2	0.024553	11701	DP1061-8	76.228	33.143		+	NaN	NaN	NaN	0	0	Median	10001000	10001000	0	1597	13	1518	3225	6637	6637		1	9606
LGFAGLVQEISFGTTK	1	0	Unmodified	1666.893	0.89302232	192	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			23.126	23.126	2	1.7102E-05	15221	DP1061-8	119.74	84.091			NaN	NaN	NaN	0	0	Median	2333800	0	2333800	1598	192	1519	3226	6638;6639	6638		2	9606
LGGIGQFLAK	1	0	Unmodified	1002.5862	0.58621603	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				18.741	18.741	2	0.0071554	10285	DP1061-7	97.798	60.639			NaN	NaN	NaN	0	0	Median	4488500	0	4488500	1599	296	1520	3227	6640;6641	6641		2	9606
LGGIPVGVIAVETR	0	1	Unmodified	1379.8136	0.81364979	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.857	19.857	2	0.005266	10308	DP1061-6	77.533	77.533			0.52219	0.60066	NaN	1	0	Median	6923100	4410100	2513000	1600	34	1521	3228	6642;6643	6643		2	9606
LGGIPVGVVAVETR	0	1	Unmodified	1365.798	0.79799972	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.078	19.078	2	3.7816999999999995E-19	10434	DP1061-6	168.22	112.76			0.82184	0.80655	5.7546	4	0	Linear	711360000	402960000	308400000	1601	309	1522	3229;3230;3231;3232	6644;6645;6646;6647;6648;6649;6650;6651;6652;6653;6654;6655;6656;6657;6658;6659;6660;6661;6662;6663;6664	6649		21	9606
LGKKPMYK	3	0	Unmodified	963.55756	0.55755844	79	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	2	1	0	1					32.538	32.538	1	0.052416	19500	DP1061-6	40.573	16.37			NaN	NaN	NaN	0	0	Median	1153000	1153000	0	1602	79	1523	3233	6665	6665		1	9606
LGQASLGVIK	1	0	Unmodified	984.59678	0.59678072	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				16.094	16.094	2	0.0073573	7140	DP1061-7	96.948	59.22			NaN	NaN	NaN	0	0	Median	26228000	0	26228000	1603	428	1524	3234	6666;6667	6667		2	9606
LGSESQYSPTPLLK	1	0	Unmodified	1518.793	0.79297392	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					17.6	17.6	2	0.00033218	7675	DP1061-6	114.87	62.143			NaN	NaN	NaN	0	0	Median	7656000	0	7656000	1604	68	1525	3235	6668;6669;6670	6669		3	9606
LGSVEAPK	1	0	Unmodified	799.44397	0.44396847	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				12.672	12.672	2	0.022807	2891	DP1061-7	87.754	32.25			NaN	NaN	NaN	0	0	Median	12453000	0	12453000	1605	184	1526	3236	6671	6671		1	9606
LGTEPTSETQDELQR	0	1	Unmodified	1702.801	0.80097243	44	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				15.074	15.074	2	1.6872E-08	5881	DP1061-7	178.71	97.188			NaN	NaN	NaN	0	0	Median	0	0	0	1606	44	1527	3237	6672	6672		1	9606
LGTPELSTAER	0	1	Unmodified	1172.6037	0.60371659	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.25	1	1		1		15.224	15.224	2	3.238E-16	5950	DP1061-7	157.99	114.22			0.79774	0.80378	3.5987	3	0	Plateau	995140000	552280000	442860000	1607	309	1528	3238;3239;3240	6673;6674;6675;6676;6677;6678;6679;6680;6681;6682;6683	6679		11	9606
LGTPELSTAERK	1	1	Unmodified	1300.6987	0.69867961	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					13.732	13.732	2;3	0.00033636	3386	DP1061-6	93.839	67.132			0.82576	0.89678	0.10137	2	0	Median	94343000	52129000	42215000	1608	309	1529	3241;3242	6684;6685;6686;6687;6688	6687		4	9606
LGVCFDVPTASVTEIQEK	1	0	Unmodified	1991.9874	0.98739299	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				20.342	20.342	2	1.3322E-15	12175	DP1061-7	199.96	166.96			NaN	NaN	NaN	0	0	Median	23707000	0	23707000	1609	508	1530	3243	6689;6690;6691;6692	6689		4	9606
LGVQTVAVYSEADR	0	1	Unmodified	1506.7678	0.7678218	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		17.908	17.908	2	0.00042132	8874	DP1061-9	112.94	56.127			0.84363	0.9103	3.2747	2	0	Median	79439000	51503000	27936000	1610	455	1531	3244;3245;3246;3247	6693;6694;6695;6696;6697;6698	6697		5	9606
LGVTNTIISHYDGR	0	1	Unmodified	1544.7947	0.79470526	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				17.1	17.1	2	0.00097961	8505	DP1061-7	105.13	65.261			NaN	NaN	NaN	0	0	Median	7185200	0	7185200	1611	184	1532	3248	6699;6700	6700		2	9606
LGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR	0	1	Unmodified	4114.0872	0.087205469	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0			1			20.527	20.527	3	8.7422E-08	11810	DP1061-8	72.878	53.632			NaN	NaN	NaN	0	0	Median	11943000	0	11943000	1612	339	1533	3249	6701;6702	6701		2	9606
LHDLYWQAMK	1	0	Oxidation (M)	1319.6332	0.63324258	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				16.09	16.09	3	0.045495	7109	DP1061-7	49.06	22.944			NaN	NaN	NaN	0	0	Median	12925000	0	12925000	1613	466	1534	3250	6703;6704	6704		2	9606
LHFFMPGFAPLTSR	0	1	Oxidation (M)	1635.8232	0.82316861	265;98;328;81;368;471	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	1	0	3.5	0.5			2	2		19.902	19.902	2;3	2.0845E-08	11958	DP1061-9	132.14	110.91			3.9359	4.208	7.4986	4	0	Median	330340000	69398000	260940000	1614	98;265;328;368;81;471	1535	3251;3252;3253;3254	6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716;6717;6718;6719	6713	85	15	9606
LHFFMPGFAPLTSR	0	1	Unmodified	1619.8283	0.82825399	265;98;328;81;368;471	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	3.33	0.471			4	2		21.369	21.369	2;3	1.4135E-05	13880	DP1061-9	129.89	57.099			3.3496	3.5812	NaN	1	0	Median	68471000	7741700	60730000	1615	98;265;328;368;81;471	1535	3255;3256;3257;3258;3259;3260	6720;6721;6722;6723;6724;6725;6726;6727;6728;6729;6730;6731;6732	6731		13	9606
LHNAIEGGTQLSR	0	1	Unmodified	1394.7266	0.72662569	58	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	3	0			1			13.693	13.693	2	7.2513E-05	4350	DP1061-8	123.79	79.443			NaN	NaN	NaN	0	0	Median	7235800	0	7235800	1616	58	1536	3261	6733;6734	6734		2	9606
LHYNEGLNIK	1	0	Unmodified	1199.6299	0.62987176	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		15.011	15.011	2	0.0081636	5821	DP1061-9	93.551	41.696			NaN	NaN	NaN	0	0	Median	4556200	0	4556200	1617	173	1537	3262	6735;6736	6736		2	9606
LIAHAGSLTNLAK	1	0	Unmodified	1307.7561	0.75613491	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	4	0				1		15.339	15.339	3	0.022987	6268	DP1061-9	69.229	34.728			NaN	NaN	NaN	0	0	Median	6318500	0	6318500	1618	31	1538	3263	6737	6737		1	9606
LIASVAGSVER	0	1	Unmodified	1100.619	0.61897272	327	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	4	0				1		15.546	15.546	2	0.0020545	6429	DP1061-9	113.71	47.633			NaN	NaN	NaN	0	0	Median	15654000	0	15654000	1619	327	1539	3264	6738;6739	6738		2	9606
LIDFLECGK	1	0	Unmodified	1093.5478	0.54778161	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3.5	0.5			1	1		19.488	19.488	2	0.0079891	10579	DP1061-8	105.57	78.875			NaN	NaN	NaN	0	0	Median	50620000	0	50620000	1620	130	1540	3265;3266	6740;6741;6742	6741		3	9606
LIEEEEEKQK	2	0	Unmodified	1273.6402	0.64016167	468	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	1	3	0			1			12.402	12.402	2	0.031792	2731	DP1061-8	107.57	39.351			NaN	NaN	NaN	0	0	Median	6528800	0	6528800	1621	468	1541	3267	6743;6744	6744		2	9606
LIGEYGLR	0	1	Unmodified	919.51272	0.51271674	188	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	21.523	21.523	2	0.022598	9637	DP1061-10	88.029	5.7662			NaN	NaN	NaN	0	0	Median	21501000	0	21501000	1622	188	1542	3268	6745;6746;6747;6748	6745		4	9606
LILISTNGSFIR	0	1	Unmodified	1332.7765	0.776536	391	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		20.302	20.302	2	0.0039401	12556	DP1061-9	96.143	27.408			NaN	NaN	NaN	0	0	Median	10070000	0	10070000	1623	391	1543	3269	6749;6750	6750		2	9606
LISIWSR	0	1	Unmodified	873.50724	0.50723743	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					18.827	18.827	2	0.006674	9092	DP1061-6	106.42	51.89			NaN	NaN	NaN	0	0	Median	8298700	0	8298700	1624	68	1544	3270	6751;6752	6751		2	9606
LISQIQPEVDR	0	1	Unmodified	1296.7038	0.70376498	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				16.264	16.264	2	0.00023353	7332	DP1061-7	128.27	59.644			NaN	NaN	NaN	0	0	Median	11581000	0	11581000	1625	512	1545	3271	6753;6754	6754		2	9606
LISQIQPEVDRER	0	2	Unmodified	1581.8475	0.84746911	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				15.21	15.21	3	0.00011226	5973	DP1061-7	151.98	102.68			NaN	NaN	NaN	0	0	Median	111970000	0	111970000	1626	512	1546	3272	6755;6756	6755		2	9606
LISQIVSSITASLR	0	1	Unmodified	1486.8719	0.87189295	264;465	P68363;P68366;Q9H853;Q9BQE3	TUBA1B;TUBA4A;TUBA4B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		23.384	23.384	2	5.3274E-27	16243	DP1061-9	179.19	179.19			3.9332	4.2504	1.2334	2	0	Median	39030000	8714100	30316000	1627	264;465	1547	3273;3274	6757;6758;6759;6760;6761;6762;6763;6764;6765;6766	6762		10	9606
LITEDVQGK	1	0	Unmodified	1001.5393	0.53932542	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	5	0					1	13.954	13.954	2	0.00099333	4464	DP1061-10	113.41	50.753			16.117	15.991	NaN	1	0	Median	33040000	2899500	30141000	1628	226	1548	3275	6767;6768;6769	6767		3	9606
LITGLGVGR	0	1	Unmodified	884.54435	0.54435122	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1.5	0.5	1	1				16.516	16.516	2	0.015783	6370	DP1061-6	89.142	9.6737			NaN	NaN	NaN	0	0	Median	44274000	0	44274000	1629	466	1549	3276;3277	6770;6771;6772;6773	6771		4	9606
LITKPSEGTTLR	1	1	Unmodified	1314.7507	0.75071518	201	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	1	3	0			1			13.587	13.587	3	0.013786	4208	DP1061-8	72.34	38.579			NaN	NaN	NaN	0	0	Median	6882100	0	6882100	1630	201	1550	3278	6774	6774		1	9606
LITPAVVSER	0	1	Unmodified	1083.6288	0.62880913	251	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					2	18.224	18.224	2	0.042816	8962	DP1061-10	85.731	42.484			NaN	NaN	NaN	0	0	Median	0	0	0	1631	251	1551	3279;3280	6775;6776	6776		2	9606
LITQTFSHHNQLAQK	1	0	Unmodified	1764.9271	0.92711641	541	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		14.051	14.051	3	3.0104E-06	4560	DP1061-9	127.79	81.73			NaN	NaN	NaN	0	0	Median	20078000	0	20078000	1632	541	1552	3281	6777;6778	6778		2	9606
LITYGSDR	0	1	Unmodified	923.47125	0.47124585	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		14.095	14.095	2	7.8949E-11	4743	DP1061-8	157.21	103.65			0.98296	1.0094	8.0143	3	0	Median	729270000	381820000	347450000	1633	86	1553	3282;3283;3284	6779;6780;6781;6782;6783;6784;6785	6781		7	9606
LITYGSDRTEALK	1	1	Unmodified	1465.7777	0.77765821	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			15.022	15.022	3	0.0044102	5806	DP1061-8	69.229	42.259			0.91468	0.95251	NaN	1	0	Median	17242000	8255000	8987400	1634	86	1554	3285	6786;6787;6788;6789;6790	6786		5	9606
LITYGSDRTEALKR	1	2	Unmodified	1621.8788	0.87876924	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	3	0			1			14.044	14.044	4	0.0013116	4777	DP1061-8	77.387	77.387			1.0031	1.091	NaN	1	0	Median	81523000	38789000	42734000	1635	86	1555	3286	6791;6792;6793;6794	6794		4	9606
LIVDHNIADYMTAK	1	0	Oxidation (M)	1618.8025	0.80249275	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	1	0	1					16.38	16.38	2	0.0085713	6259	DP1061-6	83.53	26.748			NaN	NaN	NaN	0	0	Median	3294400	0	3294400	1636	387	1556	3287	6795;6796	6796	484	2	9606
LIVENLSSR	0	1	Unmodified	1029.5819	0.58185893	314	Q13247;Q13243;Q08170	SRSF6;SRSF5;SRSF4	Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 5;Serine/arginine-rich splicing factor 4	yes	no	0	0	0	4	0				1		16.092	16.092	2	0.0028411	7152	DP1061-9	117.81	55.153			NaN	NaN	NaN	0	0	Median	20140000	0	20140000	1637	314	1557	3288	6797;6798	6798		2	9606
LIVTSATMDAEK	1	0	Oxidation (M)	1293.6486	0.64861787	438	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	1	0	2	0		1				14.621	14.621	2	0.051676	5288	DP1061-7	66.19	27.042			NaN	NaN	NaN	0	0	Median	4479700	0	4479700	1638	438	1558	3289	6799	6799		1	9606
LKVPPAINQFTQALDR	1	1	Unmodified	1810.0101	0.010117761	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		20.011	20.011	3	1.5535E-08	12083	DP1061-9	136.39	113.55			NaN	NaN	NaN	0	0	Median	30899000	0	30899000	1639	242	1559	3290	6800;6801	6801		2	9606
LKYENEVALR	1	1	Unmodified	1233.6717	0.67173657	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1.67	0.471	1	2				14.958	14.958	2;3	0.0075693	5720	DP1061-7	66.56	44.231		+	NaN	NaN	NaN	0	0	Median	110020000	110020000	0	1640	17	1560	3291;3292;3293	6802;6803;6804;6805;6806	6805		5	9606
LLATGSQDR	0	1	Unmodified	959.50361	0.50360861	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1.67	0.471	1	2				12.522	12.522	2	0.0061358	2147	DP1061-6	110.12	33.642			NaN	NaN	NaN	0	0	Median	14563000	0	14563000	1641	303	1561	3294;3295;3296	6807;6808;6809;6810	6807		4	9606
LLDAVDTYIPVPAR	0	1	Unmodified	1541.8453	0.84534384	196	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		20.559	20.559	2	4.8922E-05	12898	DP1061-9	115.57	93.1			1.5783	1.6874	NaN	1	0	Median	7163200	3215200	3947900	1642	196	1562	3297	6811;6812;6813	6811		3	9606
LLDSVPPTAISHFK	1	0	Unmodified	1523.8348	0.83477916	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				17.493	17.493	3	0.00027659	8906	DP1061-7	107.93	47.765			NaN	NaN	NaN	0	0	Median	37706000	0	37706000	1643	508	1563	3298	6814;6815	6814		2	9606
LLDVTGGLGTDELR	0	1	Unmodified	1457.7726	0.77257283	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				19.65	19.65	2	7.8299E-05	11390	DP1061-7	142.1	55.961			NaN	NaN	NaN	0	0	Median	5802100	0	5802100	1644	558	1564	3299	6816;6817;6818;6819	6817		4	9606
LLEEALLR	0	1	Unmodified	955.57023	0.57023162	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.298	18.298	2	0.00094208	8494	DP1061-6	131.04	45.772			NaN	NaN	NaN	0	0	Median	10500000	0	10500000	1645	271	1565	3300	6820;6821	6821		2	9606
LLEGEDAHLSSSQFSSGSQSSR	0	1	Unmodified	2308.0567	0.056746196	7	CON__P02533;P02533;CON__Q61782	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1.5	0.5	1	1				16.088	16.088	3	8.5177E-08	5847	DP1061-6	128.75	105.65		+	NaN	NaN	NaN	0	0	Median	5259900	5259900	0	1646	7	1566	3301;3302	6822;6823;6824;6825	6823		4	9606
LLEGEECR	0	1	Unmodified	1004.4597	0.45969489	20;18	CON__P35908v2;P35908;CON__P35908;Q01546;CON__Q6NXH9;CON__Q01546;CON__P07744;CON__Q32MB2;Q86Y46;Q7RTS7;CON__Q7RTS7;Q8N1N4;CON__Q7RTT2;CON__Q8N1N4-2;P12036;CON__P13647;P13647;CON__O95678;O95678	KRT2;KRT76;KRT73;KRT74;KRT78;NEFH;KRT5;KRT75	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 78;Neurofilament heavy polypeptide;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75	no	no	0	0	0	1	0	1					13.321	13.321	2	0.023508	3111	DP1061-6	86.833	46.26		+	NaN	NaN	NaN	0	0	Median	3777300	3777300	0	1647	20;18	1567	3303	6826	6826		1	9606
LLEIVSYK	1	0	Unmodified	963.56408	0.56408361	442	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	2	0		1				17.92	17.92	2	0.027002	9659	DP1061-7	82.241	28.273			NaN	NaN	NaN	0	0	Median	5792000	0	5792000	1648	442	1568	3304	6827	6827		1	9606
LLEMTSR	0	1	Oxidation (M)	864.4375	0.43750288	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.25	1.09		1	2		1	12.523	12.523	1;2	4.6135E-05	2871	DP1061-8	138.85	97.928			73.428	73.607	5.3242	2	0	Median	2721400000	32653000	2688700000	1649	339	1569	3305;3306;3307;3308	6828;6829;6830;6831;6832;6833;6834;6835;6836	6836	447	9	9606
LLEMTSR	0	1	Unmodified	848.44259	0.44258826	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0			1			14.97	14.97	2	0.0046282	5671	DP1061-8	110.63	75.432			NaN	NaN	NaN	0	0	Median	38530000	0	38530000	1650	339	1569	3309	6837;6838	6837		2	9606
LLEMVTCGFDGR	0	1	Oxidation (M)	1412.6428	0.64282099	566				yes	yes	0	1	0	1	0	1					16.813	16.813	2	0.0021779	6751	DP1061-6	104.2	64.651	+		NaN	NaN	NaN	0	0	Median	13606000	0	13606000	1651	566	1570	3310	6839	6839	661	1	9606
LLEQQELR	0	1	Unmodified	1027.5662	0.56620887	468	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	2					14.89	14.89	2	0.012537	4762	DP1061-6	103.83	25.317			NaN	NaN	NaN	0	0	Median	0	0	0	1652	468	1571	3311;3312	6840;6841	6841		2	9606
LLEQYKEESK	2	0	Unmodified	1265.6503	0.65033243	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		2				13.324	13.324	2;3	6.7052E-05	3663	DP1061-7	123.86	77.045			9.5747	10.771	NaN	1	0	Median	25471000	2983200	22488000	1653	281	1572	3313;3314	6842;6843;6844;6845	6843		4	9606
LLETESFQMNR	0	1	Oxidation (M)	1382.65	0.65001485	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.25	0.433	3	1				16.117	16.117	2	1.31E-10	5819	DP1061-6	146.79	116.1			0.89775	0.90314	10.646	2	0	Median	1447800000	767110000	680730000	1654	309	1573	3315;3316;3317;3318	6846;6847;6848;6849;6850;6851;6852;6853;6854;6855;6856	6848	391	11	9606
LLETESFQMNR	0	1	Unmodified	1366.6551	0.65510023	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.568	17.568	2	4.932999999999999E-102	7635	DP1061-6	263.57	208.04			0.92451	0.98481	10.02	2	0	Median	230960000	117060000	113900000	1655	309	1573	3319;3320	6857;6858;6859;6860;6861;6862;6863;6864	6858		8	9606
LLEVDLK	1	0	Unmodified	828.49567	0.49566969	314	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	0	0	0	4	0				1		17.16	17.16	2	0.022765	8632	DP1061-9	97.602	0			NaN	NaN	NaN	0	0	Median	6436400	0	6436400	1656	314	1574	3321	6865	6865		1	9606
LLGAALPLLTK	1	0	Unmodified	1108.722	0.72198123	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				20.613	20.613	2	0.013705	12567	DP1061-7	85.807	79.495			NaN	NaN	NaN	0	0	Median	13617000	0	13617000	1657	466	1575	3322	6866;6867	6867		2	9606
LLGASELPIVTPALR	0	1	Unmodified	1548.9239	0.92392852	210	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			21.143	21.143	2	6.0578E-05	12749	DP1061-8	155.48	120.3			NaN	NaN	NaN	0	0	Median	7033200	0	7033200	1658	210	1576	3323	6868;6869	6868		2	9606
LLGQFTLIGIPPAPR	0	1	Unmodified	1591.945	0.94499831	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			22.343	22.343	2	4.4555000000000004E-27	14204	DP1061-8	174.57	174.57			1.3766	1.4792	NaN	1	0	Median	41203000	17297000	23906000	1659	166	1577	3324	6870;6871;6872;6873;6874	6873		5	9606
LLHYLGHVMVNGPTTPIPVK	1	0	Oxidation (M)	2201.2031	0.20308026	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				17.48	17.48	4	6.799E-10	8969	DP1061-7	103.77	83.976			0.78828	0.82589	NaN	1	0	Median	189310000	108920000	80397000	1660	116	1578	3325	6875;6876;6877;6878;6879	6878	159	5	9606
LLIHQSLAGGIIGVK	1	0	Unmodified	1517.9293	0.92934824	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			18.313	18.313	3	3.6091E-05	9165	DP1061-8	118.51	107.27			NaN	NaN	NaN	0	0	Median	16410000	0	16410000	1661	232	1579	3326	6880;6881	6881		2	9606
LLLEDLVK	1	0	Unmodified	941.57973	0.57973367	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.15	3	1	1	1		20.819	20.819	2	1.2758E-05	12170	DP1061-7	128.57	27.824			0.89961	0.98131	3.2077	5	0	Median	456650000	258020000	198640000	1662	309	1580	3327;3328;3329;3330;3331;3332	6882;6883;6884;6885;6886;6887;6888;6889;6890;6891;6892;6893;6894;6895;6896;6897;6898	6890		17	9606
LLLEEIYR	0	1	Unmodified	1047.5964	0.59644637	545	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		19.673	19.673	2	5.4773E-05	11771	DP1061-9	138.37	75.65			NaN	NaN	NaN	0	0	Median	22053000	0	22053000	1663	545	1581	3333	6899;6900	6900		2	9606
LLLGAGAVAYGVR	0	1	Unmodified	1258.7398	0.73975656	458	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		19.153	19.153	2	0.039915	11224	DP1061-9	72.607	36.226			NaN	NaN	NaN	0	0	Median	5604700	0	5604700	1664	458	1582	3334	6901	6901		1	9606
LLLPGELAK	1	0	Unmodified	952.59572	0.59571809	57;96	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;A0A2R8Y619;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	0	0	5	0					2	25.158	25.158	2	0.00011532	13028	DP1061-10	137.9	51.432			NaN	NaN	NaN	0	0	Median	200020000	0	200020000	1665	57;96	1583	3335;3336	6902;6903;6904	6903		3	9606
LLLQVQHASK	1	0	Unmodified	1135.6713	0.67134264	85;118	P05141;P12235;P12236	SLC25A5;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	1	0	1					14.149	14.149	2	0.0026272	3880	DP1061-6	99.013	99.013			2.6633	2.9771	NaN	1	0	Median	10421000	2691100	7729700	1666	85;118	1584	3337	6905;6906	6905		2	9606
LLMHRREQK	1	2	Oxidation (M)	1225.6714	0.67135942	568				yes	yes	0	1	2	2	0		1				21.715	21.715	2	0.016079	13949	DP1061-7	60.788	60.788	+		0.8165	0.87777	NaN	1	0	Median	5029700	2446100	2583600	1667	568	1585	3338	6907	6907	663	1	9606
LLMMAGIDDCYTSAR	0	1	2 Oxidation (M)	1747.7579	0.7579271	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	0	4	0				1		16.959	16.959	2	6.5405E-06	8188	DP1061-9	171.67	143.8			NaN	NaN	NaN	0	0	Median	17735000	0	17735000	1668	123	1586	3339	6908;6909	6908	169;170	2	9606
LLMMAGIDDCYTSAR	0	1	Oxidation (M)	1731.763	0.76301248	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	0	4	0				1		18.877	18.877	2	0.0039681	10814	DP1061-9	89.266	62.559			NaN	NaN	NaN	0	0	Median	5390800	0	5390800	1669	123	1586	3340	6910	6910	169;170	1	9606
LLNILMQLR	0	1	Oxidation (M)	1128.6689	0.6688998	53	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	1	0	2	0		1				20.65	20.65	2	0.020071	12741	DP1061-7	79.116	39.863			NaN	NaN	NaN	0	0	Median	2920200	0	2920200	1670	53	1587	3341	6911	6911	54	1	9606
LLNNWLTYSK	1	0	Unmodified	1250.6659	0.66592292	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				19.743	19.743	2	0.0015927	11480	DP1061-7	117.89	51.817			NaN	NaN	NaN	0	0	Median	6965300	0	6965300	1671	454	1588	3342	6912;6913;6914	6912		3	9606
LLNPLVSK	1	0	Unmodified	882.55385	0.55385327	468	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	3	0			1			16.79	16.79	2	0.036238	7465	DP1061-8	76.478	0			NaN	NaN	NaN	0	0	Median	7981300	0	7981300	1672	468	1589	3343	6915	6915		1	9606
LLNTWTNR	0	1	Unmodified	1016.5403	0.54032847	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.278	16.278	2	0.01791	6171	DP1061-6	94.662	4.9102			NaN	NaN	NaN	0	0	Median	5787700	0	5787700	1673	271	1590	3344	6916;6917	6917		2	9606
LLQAETASNSAR	0	1	Unmodified	1259.647	0.64697839	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					13.235	13.235	2	0.00015494	2942	DP1061-6	128.03	76.589			NaN	NaN	NaN	0	0	Median	4344300	0	4344300	1674	346	1591	3345	6918;6919	6918		2	9606
LLQALAQYQNHLQEQPR	0	1	Unmodified	2049.0756	0.075571565	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		2				17.895	17.895	2;3	3.9405E-39	9511	DP1061-7	242.4	166.16			NaN	NaN	NaN	0	0	Median	35680000	0	35680000	1675	466	1592	3346;3347	6920;6921;6922;6923	6921		4	9606
LLQDFFNGK	1	0	Unmodified	1080.5604	0.56039521	113;128	P17066;P11142;P54652	HSPA6;HSPA8;HSPA2	Heat shock 70 kDa protein 6;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3	0			1			19.501	19.501	2	0.030883	10543	DP1061-8	70.525	39.221			9.6437	10.301	NaN	1	0	Median	43619000	4814400	38805000	1676	128;113	1593	3348	6924	6924		1	9606
LLQDFFNGR	0	1	Unmodified	1108.5665	0.56654322	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			19.775	19.775	2	1.1352E-09	10974	DP1061-8	148.04	119.96			9.2675	9.7312	NaN	1	0	Median	171380000	17620000	153760000	1677	108	1594	3349	6925;6926;6927;6928	6927		4	9606
LLQDLQLGDEEDAR	0	1	Unmodified	1613.7897	0.78967946	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					18.649	18.649	2	8.4033E-06	8888	DP1061-6	135.8	94.678			NaN	NaN	NaN	0	0	Median	5202700	0	5202700	1678	341	1595	3350	6929;6930	6930		2	9606
LLQLVEDR	0	1	Unmodified	984.5604	0.56039521	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3.33	0.471			2	1		17.294	17.294	2	0.0016315	9108	DP1061-8	127.02	61.983			NaN	NaN	NaN	0	0	Median	55056000	0	55056000	1679	130	1596	3351;3352;3353	6931;6932;6933;6934;6935	6934		5	9606
LLQVVEEPQALAAFLR	0	1	Unmodified	1796.0196	0.019619815	464	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	3.67	0.471			1	2		23.405	23.405	2	1.383E-07	15497	DP1061-8	140.31	75.495			NaN	NaN	NaN	0	0	Median	3367300	0	3367300	1680	464	1597	3354;3355;3356	6936;6937;6938;6939	6936		4	9606
LLSISGK	1	0	Unmodified	716.44324	0.44324019	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		14.668	14.668	2	0.016174	5351	DP1061-9	101.21	0			NaN	NaN	NaN	0	0	Median	5616300	0	5616300	1681	95	1598	3357	6940;6941	6941		2	9606
LLSISGKR	1	1	Unmodified	872.54435	0.54435122	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		13.07	13.07	2	0.038366	3504	DP1061-9	110.63	52.466			NaN	NaN	NaN	0	0	Median	6668700	0	6668700	1682	95	1599	3358	6942	6942		1	9606
LLSITVR	0	1	Unmodified	800.51199	0.51198846	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.774	16.774	2	0.016174	6819	DP1061-6	101.21	26.695			NaN	NaN	NaN	0	0	Median	7485200	0	7485200	1683	271	1600	3359	6943	6943		1	9606
LLSSFDFFLTDAR	0	1	Unmodified	1530.7718	0.77184455	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			23.586	23.586	2	3.5332E-05	15877	DP1061-8	133.02	79.267			NaN	NaN	NaN	0	0	Median	2452700	0	2452700	1684	69	1601	3360	6944;6945	6945		2	9606
LLSVVPVPEGYSVK	1	0	Unmodified	1485.8443	0.84428121	482	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					2	24.189	24.189	2	0.0028443	12844	DP1061-10	92.866	45.606			NaN	NaN	NaN	0	0	Median	7711100	0	7711100	1685	482	1602	3361;3362	6946;6947;6948	6946		3	9606
LLTSFLPAQLLR	0	1	Unmodified	1370.8286	0.82857157	100	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	3	0			1			22.731	22.731	2	0.0013459	14785	DP1061-8	103.55	55.723			2.4415	2.6418	NaN	1	0	Median	7410900	1978000	5432900	1686	100	1603	3363	6949;6950;6951;6952;6953	6952		5	9606
LLTSQCGAAEEEFVQR	0	1	Unmodified	1836.8676	0.8676122	274	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	4	0				1		17.602	17.602	2	4.0107E-05	9067	DP1061-9	117.2	76.148			NaN	NaN	NaN	0	0	Median	5652700	0	5652700	1687	274	1604	3364	6954;6955	6955		2	9606
LLVDVDESTLSPEEQKER	1	1	Unmodified	2086.043	0.042993612	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				17.364	17.364	3	0.00028056	8848	DP1061-7	104.93	64.09			NaN	NaN	NaN	0	0	Median	9426500	0	9426500	1688	64	1605	3365	6956;6957	6956		2	9606
LLVPTQFVGAIIGK	1	0	Unmodified	1454.8861	0.88608645	27	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			22.876	22.876	2	0.00045864	14702	DP1061-8	112.13	0			NaN	NaN	NaN	0	0	Median	8938400	0	8938400	1689	27	1606	3366	6958	6958		1	9606
LLVPTQYVGAIIGK	1	0	Unmodified	1470.881	0.88100107	523	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			21.562	21.562	2	0.00024454	13342	DP1061-8	116.77	76.981			NaN	NaN	NaN	0	0	Median	12925000	0	12925000	1690	523	1607	3367	6959	6959		1	9606
LLYAFAEATVPK	1	0	Unmodified	1321.7282	0.72818882	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.743	19.743	2	0.0021836	11963	DP1061-9	93.667	93.667			0.8386	0.88613	7.992	2	0	Median	141280000	75383000	65902000	1691	87	1608	3368;3369	6960;6961;6962;6963;6964;6965;6966;6967	6966		8	9606
LLYGMALVR	0	1	Oxidation (M)	1050.5896	0.58958685	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	1	0	2	0		1				17.581	17.581	2	0.020071	9106	DP1061-7	79.116	48.862			NaN	NaN	NaN	0	0	Median	6683800	0	6683800	1692	558	1609	3370	6968	6968	651	1	9606
LMALYVASHYK	1	0	Oxidation (M)	1310.6693	0.66929373	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				15.949	15.949	2	0.0090764	6857	DP1061-7	87.806	57.552			NaN	NaN	NaN	0	0	Median	15719000	0	15719000	1693	485	1610	3371	6969;6970	6970	582	2	9606
LMEEIMSEK	1	0	2 Oxidation (M)	1140.5043	0.50426182	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	0	3	0			1			13.006	13.006	2	0.0094082	3532	DP1061-8	83.998	50.736			NaN	NaN	NaN	0	0	Median	9419700	0	9419700	1694	130	1611	3372	6971;6972	6972	171;172	2	9606
LMEEIMSEKENK	2	0	2 Oxidation (M)	1511.6847	0.68474538	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	1	3	0			1			12.426	12.426	2	0.0012889	2741	DP1061-8	153.97	110.2			NaN	NaN	NaN	0	0	Median	7731500	0	7731500	1695	130	1612	3373	6973	6973	171;172	1	9606
LMELHGEGSSSGK	1	0	Oxidation (M)	1346.6136	0.61362935	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4.67	0.471				1	2	12.416	12.416	2;3	0.00077502	2584	DP1061-9	110.66	72.575			NaN	NaN	NaN	0	0	Median	43270000	0	43270000	1696	226	1613	3374;3375;3376	6974;6975;6976;6977;6978	6977	288	5	9606
LMELHGEGSSSGK	1	0	Unmodified	1330.6187	0.61871473	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		12.933	12.933	3	0.0057593	3307	DP1061-9	82.069	58.319			NaN	NaN	NaN	0	0	Median	9211300	0	9211300	1697	226	1613	3377	6979;6980	6980		2	9606
LMIWDTR	0	1	Oxidation (M)	949.46914	0.46913736	299;363	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	1	0	4	0				1		17.751	17.751	2	0.028269	9276	DP1061-9	80.462	37.462			NaN	NaN	NaN	0	0	Median	7042300	0	7042300	1698	299;363	1614	3378	6981;6982	6981	368	2	9606
LMLAQDEER	0	1	Oxidation (M)	1119.523	0.52302343	51	O43592	XPOT	Exportin-T	yes	yes	0	1	0	2	0		1				14.165	14.165	2	0.0096443	4698	DP1061-7	94.302	60.05			NaN	NaN	NaN	0	0	Median	5749300	0	5749300	1699	51	1615	3379	6983;6984	6984	52	2	9606
LMQQLQDLEECR	0	1	Oxidation (M)	1577.7178	0.71777684	433	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	1	0	4	0				1		20.729	20.729	2	0.042275	13144	DP1061-9	55.549	13.359			1.0795	1.1541	NaN	1	0	Median	9488800	4153700	5335000	1700	433	1616	3380	6985	6985		1	9606
LMQQLQDLEECR	0	1	Unmodified	1561.7229	0.72286222	433	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	0	0	4	0				1		20.914	20.914	2	0.0027612	13353	DP1061-9	85.862	49.528			0.94143	1.0065	NaN	1	0	Median	8263600	3978900	4284700	1701	433	1616	3381	6986;6987	6986		2	9606
LNDLEDALQQAK	1	0	Unmodified	1356.6885	0.68850885	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.5	1.5	1			1		18.274	18.274	2	0.00056803	8500	DP1061-6	139.38	97.095		+	NaN	NaN	NaN	0	0	Median	21472000	21472000	0	1702	80	1617	3382;3383	6988;6989;6990	6988		3	9606
LNDLEEALQQAK	1	0	Unmodified	1370.7042	0.70415892	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	1	1		1			18.73	18.73	2	0.0022937	9109	DP1061-6	152.54	74.799		+	NaN	NaN	NaN	0	0	Median	5723100	5723100	0	1703	20	1618	3384;3385	6991;6992	6991		2	9606
LNESTFDTQITK	1	0	Unmodified	1395.6882	0.6881745	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.514	16.514	2	0.024421	6411	DP1061-6	76.843	32.494			NaN	NaN	NaN	0	0	Median	5543000	0	5543000	1704	271	1619	3386	6993	6993		1	9606
LNIDSIIQR	0	1	Unmodified	1070.6084	0.60840804	163	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3.5	0.5			1	1		18.958	18.958	2	0.00036463	9970	DP1061-8	129.47	68.706			NaN	NaN	NaN	0	0	Median	40158000	0	40158000	1705	163	1620	3387;3388	6994;6995;6996;6997	6995		4	9606
LNIGGGGLGYR	0	1	Unmodified	1075.5774	0.57744226	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				16.973	16.973	2	0.024994	8350	DP1061-7	77.318	24.229			NaN	NaN	NaN	0	0	Median	11115000	0	11115000	1706	402	1621	3389	6998	6998		1	9606
LNIPVSQVNPR	0	1	Unmodified	1235.6986	0.69862003	84	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	yes	no	0	0	0	1	0	1					16.574	16.574	2	0.0068883	6483	DP1061-6	91.584	35.326			NaN	NaN	NaN	0	0	Median	3077700	0	3077700	1707	84	1622	3390	6999;7000	6999		2	9606
LNLEQGR	0	1	Unmodified	828.44537	0.44536545	468	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	3	0			1			13.578	13.578	2	0.034515	4203	DP1061-8	83.614	10.575			NaN	NaN	NaN	0	0	Median	15373000	0	15373000	1708	468	1623	3391	7001;7002	7001		2	9606
LNMATLR	0	1	Oxidation (M)	833.44292	0.44292261	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	2	0		1				12.715	12.715	2	0.026688	2966	DP1061-7	88.029	38.439			NaN	NaN	NaN	0	0	Median	9942600	0	9942600	1709	296	1624	3392	7003;7004	7004	366	2	9606
LPAAGVGDMVMATVK	1	0	2 Oxidation (M)	1490.7473	0.74728606	248	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					2	17.188	17.188	2	0.014874	6866	DP1061-10	73.951	40.061			NaN	NaN	NaN	0	0	Median	0	0	0	1710	248	1625	3393;3394	7005;7006	7005	307;308	2	9606
LPAIALDLLR	0	1	Unmodified	1093.6859	0.68593008	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2.5	0.5		1	1			22.044	22.044	2	0.0032926	13881	DP1061-8	112.41	24.714			NaN	NaN	NaN	0	0	Median	9297300	0	9297300	1711	466	1626	3395;3396	7007;7008;7009;7010	7009		4	9606
LPCIYLVDSGGAYLPR	0	1	Unmodified	1792.9182	0.91819121	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		21.571	21.571	2;3	7.2426E-38	13222	DP1061-8	191.33	191.33			0.78312	0.80952	6.3981	3	0	Median	548130000	304160000	243970000	1712	501	1627	3397;3398;3399	7011;7012;7013;7014;7015;7016;7017;7018;7019;7020;7021;7022;7023;7024;7025;7026	7011		16	9606
LPEDPLLSGLLDSPALK	1	0	Unmodified	1776.9873	0.98731663	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					24.466	24.466	2	9.5452E-06	14905	DP1061-6	120.87	81.606			NaN	NaN	NaN	0	0	Median	1326500	0	1326500	1713	194	1628	3400	7027;7028	7027		2	9606
LPEHPEGGEPEDDEAPAK	1	0	Unmodified	1915.8436	0.84356552	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	4	0				1		13.397	13.397	3	0.0047206	3735	DP1061-9	84.859	57.904			NaN	NaN	NaN	0	0	Median	8871400	0	8871400	1714	519	1629	3401	7029;7030	7030		2	9606
LPEIEEYYDGNTSSNSR	0	1	Unmodified	1972.865	0.86502925	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	3	0			2			18.388	18.388	2	0.006626	9302	DP1061-8	94.688	67.59			NaN	NaN	NaN	0	0	Median	0	0	0	1715	463	1630	3402;3403	7031;7032	7032		2	9606
LPELLCK	1	0	Unmodified	871.48372	0.48372479	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.835	16.835	2	0.00052868	6790	DP1061-6	108.98	52.957			0.82644	0.9238	NaN	1	0	Median	10804000	6155900	4648100	1716	34	1631	3404	7033;7034	7033		2	9606
LPELLLK	1	0	Unmodified	824.53714	0.53714057	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.67	1.25	1		1	1		18.645	18.645	2	1.4443E-15	8877	DP1061-6	170.31	36.195			0.75203	0.80329	8.8895	3	0	Median	698730000	387320000	311410000	1717	309	1632	3405;3406;3407	7035;7036;7037;7038;7039;7040;7041;7042;7043;7044;7045;7046	7037		12	9606
LPEVQQATK	1	0	Unmodified	1012.5553	0.55530983	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.5	1.12		1	1	1	1	13.436	13.436	2	0.0010294	3641	DP1061-7	123.98	77.855			NaN	NaN	NaN	0	0	Median	105500000	0	105500000	1718	318	1633	3408;3409;3410;3411	7047;7048;7049;7050;7051;7052;7053;7054;7055	7052		9	9606
LPGGHQTVLFSATLPK	1	0	Unmodified	1664.925	0.92499115	425	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	2	0		1				17.92	17.92	3	0.0012136	9553	DP1061-7	91.616	56.696			NaN	NaN	NaN	0	0	Median	15053000	0	15053000	1719	425	1634	3412	7056;7057;7058	7056		3	9606
LPGGNEIGMVAWK	1	0	Unmodified	1370.7017	0.70165649	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.562	19.562	2	1.265E-25	10927	DP1061-6	183.85	183.85			0.78214	0.84643	6.6125	2	0	Median	104760000	53822000	50940000	1720	309	1635	3413;3414	7059;7060;7061;7062;7063;7064;7065;7066	7062		8	9606
LPGGNEIGMVAWK	1	0	Oxidation (M)	1386.6966	0.69657112	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		3				23.314	23.314	2	0.0011354	17567	DP1061-7	96.756	58.761			1.0638	1.1146	NaN	1	0	Median	16850000	2519000	14331000	1721	309	1635	3415;3416;3417	7067;7068;7069;7070;7071	7068	392	5	9606
LPIGNTIQPSQAATFMNDAIEK	1	0	Oxidation (M)	2374.1839	0.18386096	50	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	1	0	3.5	0.5			1	1		19.031	19.031	2	4.2735E-15	10041	DP1061-8	176.89	105.01			NaN	NaN	NaN	0	0	Median	6960600	0	6960600	1722	50	1636	3418;3419	7072;7073;7074;7075	7073	51	4	9606
LPLPYGFSAMQGWR	0	1	Unmodified	1621.8075	0.80751855	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			1			22.378	22.378	2	0.0062715	14332	DP1061-8	88.596	49.962			NaN	NaN	NaN	0	0	Median	5025700	0	5025700	1723	43	1637	3420	7076	7076		1	9606
LPLQDVYK	1	0	Unmodified	974.54368	0.54368251	263	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2	1.41	2			1		16.761	16.761	2	0.0050567	7938	DP1061-9	96.19	39.143			2.2431	2.3447	NaN	1	0	Median	51512000	15548000	35964000	1724	263	1638	3421;3422;3423	7077;7078;7079;7080;7081	7081		5	9606
LPNFGFVVFDDSEPVQK	1	0	Unmodified	1936.9571	0.95707914	316	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			2			22.702	22.702	2	0.0024199	14747	DP1061-8	96.866	65.226			NaN	NaN	NaN	0	0	Median	2465500	0	2465500	1725	316	1639	3424;3425	7082;7083	7082		2	9606
LPPDVLR	0	1	Unmodified	808.48069	0.48068833	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.798	15.798	2	0.048256	5394	DP1061-6	74.439	7.4037			NaN	NaN	NaN	0	0	Median	9127500	0	9127500	1726	271	1640	3426	7084	7084		1	9606
LPPNTNDEVDEDPTGNK	1	0	Unmodified	1853.8279	0.82791546	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					14.691	14.691	2	1.5885E-08	4295	DP1061-6	172.33	145.18			NaN	NaN	NaN	0	0	Median	4228800	0	4228800	1727	356	1641	3427	7085;7086	7085		2	9606
LPSYLDK	1	0	Unmodified	834.44872	0.4487195	401	Q86TJ2	TADA2B	Transcriptional adapter 2-beta	yes	yes	0	0	0	1	0	2					16.969	16.969	2	0.0033375	6533	DP1061-6	115.46	57.648			NaN	NaN	NaN	0	0	Median	34876000	34876000	0	1728	401	1642	3428;3429	7087;7088;7089	7087		3	9606
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	0	2	Oxidation (M)	3141.4269	0.4268978	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	1	2	0		1				17.273	17.273	3	4.6169E-10	8650	DP1061-7	119.35	88.072			NaN	NaN	NaN	0	0	Median	26992000	0	26992000	1729	281	1643	3430	7090;7091;7092	7092	354	3	9606
LQAEISQAAR	0	1	Unmodified	1085.5829	0.58292157	50	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	3	0			1			13.87	13.87	2	0.00027517	4496	DP1061-8	127.68	36.693			NaN	NaN	NaN	0	0	Median	19895000	0	19895000	1730	50	1644	3431	7093;7094	7094		2	9606
LQAFGLNPK	1	0	Unmodified	986.55492	0.5549159	415	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2	0		1				16.808	16.808	2	0.02179	8028	DP1061-7	82.671	41.444			NaN	NaN	NaN	0	0	Median	9259800	0	9259800	1731	415	1645	3432	7095;7096	7095		2	9606
LQANISTGVSK	1	0	Unmodified	1116.6139	0.61388734	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					14.17	14.17	2	0.013072	3884	DP1061-6	86.344	36.921			NaN	NaN	NaN	0	0	Median	9892900	0	9892900	1732	68	1646	3433	7097;7098	7098		2	9606
LQAQSLSTVGPR	0	1	Unmodified	1255.6884	0.68844927	48	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				15.315	15.315	2	0.013951	6096	DP1061-7	83.883	12.191			NaN	NaN	NaN	0	0	Median	11334000	0	11334000	1733	48	1647	3434	7099	7099		1	9606
LQDVSGQLNSTK	1	0	Unmodified	1288.6623	0.6622941	143	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	4	0				1		14.208	14.208	2	0.024421	4927	DP1061-9	76.843	13.659			NaN	NaN	NaN	0	0	Median	6270000	0	6270000	1734	143	1648	3435	7100;7101	7100		2	9606
LQETLSAADR	0	1	Unmodified	1102.5619	0.56185177	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.166	14.166	2	0.0010372	3900	DP1061-6	119.68	15.941			NaN	NaN	NaN	0	0	Median	11986000	0	11986000	1735	271	1649	3436	7102;7103	7103		2	9606
LQETSSQSYVEEQK	1	0	Unmodified	1654.7686	0.76860967	415	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2.5	0.5		1	1			14.123	14.123	2	4.1889E-05	4627	DP1061-7	169.52	119.41			NaN	NaN	NaN	0	0	Median	15346000	0	15346000	1736	415	1650	3437;3438	7104;7105;7106	7105		3	9606
LQLSLADFR	0	1	Unmodified	1061.5869	0.58694431	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			20.338	20.338	2	0.00044939	11773	DP1061-8	156.75	85.412			NaN	NaN	NaN	0	0	Median	13475000	0	13475000	1737	29	1651	3439	7107;7108;7109;7110	7110		4	9606
LQNIMMLLR	0	1	2 Oxidation (M)	1162.6202	0.62023505	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	2	0	2	0		1				18.639	18.639	2	0.028052	10073	DP1061-7	75.189	35.122			NaN	NaN	NaN	0	0	Median	0	0	0	1738	512	1652	3440	7111	7111	617;618	1	9606
LQNLDALTNLTVLSMQSNR	0	1	Oxidation (M)	2146.1052	0.10521671	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		21.391	21.391	2	2.7103E-35	13926	DP1061-9	227.74	151.38			NaN	NaN	NaN	0	0	Median	20562000	0	20562000	1739	360	1653	3441	7112;7113;7114	7113	474	3	9606
LQNLDALTNLTVLSMQSNR	0	1	Unmodified	2130.1103	0.11030209	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				3		22.362	22.362	2	1.5046E-10	15239	DP1061-9	134.81	86.199			NaN	NaN	NaN	0	0	Median	2331300	0	2331300	1740	360	1653	3442;3443;3444	7115;7116;7117	7116		3	9606
LQNSYQPTNK	1	0	Unmodified	1191.5884	0.58840088	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2.5	0.5		1	1			12.571	12.571	2	0.00031578	2730	DP1061-7	168.26	111.53			NaN	NaN	NaN	0	0	Median	24659000	0	24659000	1741	396	1654	3445;3446	7118;7119;7120;7121	7119		4	9606
LQPHPQLSPEIR	0	1	Unmodified	1413.7728	0.7728476	329	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		14.964	14.964	3	2.9557E-05	5785	DP1061-9	135.1	105.56			NaN	NaN	NaN	0	0	Median	20141000	0	20141000	1742	329	1655	3447	7122;7123	7122		2	9606
LQQNISWK	1	0	Unmodified	1015.5451	0.5450795	492	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					15.701	15.701	2	0.013935	5511	DP1061-6	101.28	19.903			NaN	NaN	NaN	0	0	Median	3678700	0	3678700	1743	492	1656	3448	7124	7124		1	9606
LQVEHPCTEMVADVNLPAAQLQIAMGIPLYR	0	1	2 Oxidation (M)	3508.7517	0.75166651	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.5	0.5	1	1				22.351	22.351	3	6.1763E-24	13516	DP1061-6	114.49	99.196			0.667	0.75289	8.0173	2	0	Median	37654000	22751000	14902000	1744	309	1657	3449;3450	7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139	7132	393;394	15	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Oxidation (M)	2595.3037	0.30365852	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.25	0.433			3	1		20.119	20.119	2;3	1.2236E-10	11339	DP1061-8	102.21	102.21			0.9779	1.0348	5.8013	2	0	Median	225300000	121330000	103960000	1745	86	1658	3451;3452;3453;3454	7140;7141;7142;7143;7144;7145;7146;7147;7148;7149	7141	93	10	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Unmodified	2579.3087	0.3087439	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			22.235	22.235	3	7.2539E-17	14106	DP1061-8	140.59	114.68			0.86578	0.94025	NaN	1	0	Median	21357000	12078000	9278900	1746	86	1658	3455	7150;7151;7152;7153;7154	7150		5	9606
LQVEHPVTEMITGTDLVEWQLR	0	1	Oxidation (M)	2609.3159	0.31593777	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	4	0				1		20.543	20.543	3	0.0086472	12985	DP1061-9	50.426	50.426			0.57028	0.60971	NaN	1	0	Median	10160000	5615700	4544200	1747	455	1659	3456	7155	7155	541	1	9606
LRAESDFVK	1	1	Unmodified	1063.5662	0.56620887	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		2				13.688	13.688	3	0.015203	4099	DP1061-7	85.533	37.959			NaN	NaN	NaN	0	0	Median	0	0	0	1748	339	1660	3457;3458	7156;7157	7156		2	9606
LRAPTSTEANHIR	0	2	Unmodified	1464.7797	0.77972389	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	1	2	0		1				12.54	12.54	3	0.038189	2762	DP1061-7	59.607	27.765			NaN	NaN	NaN	0	0	Median	10509000	0	10509000	1749	268	1661	3459	7158	7158		1	9606
LREFEEGLVSQYK	1	1	Unmodified	1596.8148	0.814772	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	1	2	0		1				17.181	17.181	2	0.0062803	8553	DP1061-7	110.93	76.177			NaN	NaN	NaN	0	0	Median	17549000	0	17549000	1750	428	1662	3460	7159	7159		1	9606
LRPGVSILALHGR	0	2	Unmodified	1387.8412	0.84120194	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	1	2	0		1				16.113	16.113	3	0.03919	7153	DP1061-7	59.294	28.731			NaN	NaN	NaN	0	0	Median	7306300	0	7306300	1751	313	1663	3461	7160	7160		1	9606
LRSEIDNVK	1	1	Unmodified	1072.5877	0.58767259	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	1	0	1					12.566	12.566	2	0.0018543	2152	DP1061-6	148.94	71.626		+	NaN	NaN	NaN	0	0	Median	27045000	27045000	0	1752	80	1664	3462	7161;7162	7161		2	9606
LSDGGLLLSYDGSSYTTYMK	1	0	Oxidation (M)	2186.0089	0.0089162914	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	7					20.702	20.702	2	7.5961E-16	10816	DP1061-6	140.82	122.09			0.76881	0.85938	18.673	2	0	Median	36569000	17834000	18735000	1753	309	1665	3463;3464;3465;3466;3467;3468;3469	7163;7164;7165;7166;7167;7168;7169;7170;7171;7172;7173;7174;7175;7176;7177	7165	395	15	9606
LSDGGLLLSYDGSSYTTYMKEEVDR	1	1	Oxidation (M)	2814.2906	0.29057046	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0		1				19.558	19.558	3	5.9455E-22	11243	DP1061-7	133.98	119.32			0.83485	0.8973	NaN	1	0	Median	16399000	8003500	8395400	1754	309	1666	3470	7178;7179;7180;7181	7178	395	4	9606
LSDLDYMQFIR	0	1	Oxidation (M)	1415.6755	0.67550132	274	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	1	0	4	0				1		20.08	20.08	2	0.034449	12323	DP1061-9	72.243	35.819			NaN	NaN	NaN	0	0	Median	4550000	0	4550000	1755	274	1667	3471	7182	7182		1	9606
LSELLPEEVEAEVK	1	0	Unmodified	1583.8294	0.82941901	547	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			19.893	19.893	2	0.01292	11120	DP1061-8	81.017	35.858			NaN	NaN	NaN	0	0	Median	6995900	0	6995900	1756	547	1668	3472	7183;7184;7185	7184		3	9606
LSFYETGEIPR	0	1	Unmodified	1310.6507	0.65066678	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			18.698	18.698	2	0.01898	9637	DP1061-8	81.338	52.168			NaN	NaN	NaN	0	0	Median	9847900	0	9847900	1757	31	1669	3473	7186;7187	7187		2	9606
LSKEDIER	1	1	Unmodified	988.51892	0.51892433	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			12.511	12.511	2	0.00024718	2909	DP1061-8	143.12	14.554			NaN	NaN	NaN	0	0	Median	80892000	0	80892000	1758	113	1670	3474	7188;7189	7188		2	9606
LSKEEIER	1	1	Unmodified	1002.5346	0.53457439	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3	0			1			12.439	12.439	2	2.2842E-09	2720	DP1061-8	143.73	66.96			11.561	12.04	NaN	1	0	Median	169620000	12320000	157300000	1759	108	1671	3475	7190;7191	7190		2	9606
LSNVNLQEK	1	0	Unmodified	1043.5611	0.56112349	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2.5	0.5		1	1			13.692	13.692	2	0.00067069	4268	DP1061-8	162.97	114.41			NaN	NaN	NaN	0	0	Median	98797000	0	98797000	1760	555	1672	3476;3477	7192;7193;7194;7195	7194		4	9606
LSQILTDFPK	1	0	Unmodified	1160.6441	0.64412484	479	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	3	0			1			18.822	18.822	2	0.0060105	10032	DP1061-8	102.62	56.649			NaN	NaN	NaN	0	0	Median	11428000	0	11428000	1761	479	1673	3478	7196	7196		1	9606
LSQSLGLVSK	1	0	Unmodified	1030.6023	0.60226003	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	2	0		1				15.782	15.782	2	0.04663	6686	DP1061-7	72.325	29.456			NaN	NaN	NaN	0	0	Median	7295900	0	7295900	1762	497	1674	3479	7197	7197		1	9606
LSQVSDSVSGQTVVDPK	1	0	Unmodified	1744.8843	0.88430813	71	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				15.683	15.683	2	0.0025289	6570	DP1061-7	96.371	50.607			NaN	NaN	NaN	0	0	Median	3860400	0	3860400	1763	71	1675	3480	7198;7199	7199		2	9606
LSQYQEPLHLPGVR	0	1	Unmodified	1635.8733	0.87328993	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		20.424	20.424	2;3	3.9315E-08	9094	DP1061-9	116.71	116.71			0.84152	0.8997	61.787	3	0	Median	100550000	51643000	48907000	1764	86	1676	3481;3482;3483	7200;7201;7202;7203;7204;7205;7206;7207	7207		7	9606
LSSPATLNSR	0	1	Unmodified	1044.5564	0.55637247	6	CON__P00761			yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.062	14.062	2	7.4848E-05	3431	DP1061-6	138.06	54.31		+	NaN	NaN	NaN	0	0	Median	2745500000	2745500000	0	1765	6	1677	3484;3485;3486;3487;3488	7208;7209;7210;7211;7212;7213;7214;7215;7216;7217;7218;7219;7220;7221	7215		14	
LSSQEAASSFGDDR	0	1	Unmodified	1468.643	0.64301522	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1.41	2			1		15.211	15.211	2	9.9556E-06	6082	DP1061-9	134.2	91.452			NaN	NaN	NaN	0	0	Median	17464000	17464000	0	1766	86	1678	3489;3490;3491	7222;7223;7224;7225	7225		4	9606
LSSQEAASSFGDDRLLIEK	1	1	Unmodified	2065.0328	0.032763277	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.14	0.35			6	1		20.077	20.077	2;3	9.2707E-18	8862	DP1061-8	153.68	153.68			0.93892	0.97079	9.8944	2	0	Median	127260000	54467000	72795000	1767	86	1679	3492;3493;3494;3495;3496;3497;3498	7226;7227;7228;7229;7230;7231;7232;7233;7234;7235;7236;7237	7228		12	9606
LSTQSNSNNIEPAR	0	1	Unmodified	1529.7434	0.74339797	338	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	1	0	1					13.26	13.26	2	1.7505E-05	2996	DP1061-6	136.96	99.612			NaN	NaN	NaN	0	0	Median	2393600	0	2393600	1768	338	1680	3499	7238;7239	7239		2	9606
LSVACFYGGTPYGGQFER	0	1	Unmodified	2007.9149	0.91489675	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				20.43	20.43	2	9.1207E-23	12355	DP1061-7	222.81	185.86			NaN	NaN	NaN	0	0	Median	33543000	0	33543000	1769	508	1681	3500	7240;7241	7241		2	9606
LSYNTASNK	1	0	Unmodified	996.48762	0.4876242	193	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	12.509	12.509	2	0.00081444	3071	DP1061-10	153.71	91.053			NaN	NaN	NaN	0	0	Median	81025000	0	81025000	1770	193	1682	3501	7242;7243;7244	7242		3	9606
LTDQVMQNPR	0	1	Oxidation (M)	1216.587	0.58702067	460	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	1	0	3	0			1			12.616	12.616	2	0.00022504	2979	DP1061-8	162.25	109.47			NaN	NaN	NaN	0	0	Median	11901000	0	11901000	1771	460	1683	3502	7245;7246	7245	553	2	9606
LTDQVMQNPR	0	1	Unmodified	1200.5921	0.59210605	460	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			14.228	14.228	2	0.016916	5020	DP1061-8	102.62	61.74			NaN	NaN	NaN	0	0	Median	0	0	0	1772	460	1683	3503	7247	7247		1	9606
LTEGCSFR	0	1	Unmodified	968.43857	0.43856552	177	Q71UM5;P42677	RPS27L;RPS27	40S ribosomal protein S27-like;40S ribosomal protein S27	yes	no	0	0	0	5	0					1	13.86	13.86	2	6.0784E-06	4416	DP1061-10	136.16	84.583			4.2752	4.1755	NaN	1	0	Median	25003000	4757500	20245000	1773	177	1684	3504	7248;7249;7250	7249		3	9606
LTEQKGEQQIQK	2	0	Unmodified	1428.7573	0.75725712	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	0	1					12.413	12.413	3	0.0004991	1951	DP1061-6	112.64	81.496			NaN	NaN	NaN	0	0	Median	11180000	0	11180000	1774	559	1685	3505	7251	7251		1	9606
LTEVQDDKEEEEEENPLLVPLEEK	2	0	Unmodified	2853.3655	0.36550954	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	1	3	0			1			19.531	19.531	3	0.0052534	10847	DP1061-8	70.345	50.807			NaN	NaN	NaN	0	0	Median	9862700	0	9862700	1775	407	1686	3506	7252;7253	7253		2	9606
LTFLVAQK	1	0	Unmodified	918.55385	0.55385327	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				17.479	17.479	1;2	6.5619E-10	8991	DP1061-7	154.09	93.736			0.88162	0.98549	8.129	3	0	Median	819850000	437250000	382590000	1776	309	1687	3507;3508;3509	7254;7255;7256;7257;7258;7259;7260;7261;7262	7262		9	9606
LTISSPLEAHK	1	0	Unmodified	1194.6608	0.66083754	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					15.659	15.659	3	0.02604	5574	DP1061-6	67.08	37.312			NaN	NaN	NaN	0	0	Median	6275800	0	6275800	1777	356	1688	3510	7263	7263		1	9606
LTMLDIASNR	0	1	Oxidation (M)	1148.586	0.58595803	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		15.947	15.947	2	0.0060591	6871	DP1061-9	96.034	96.034			NaN	NaN	NaN	0	0	Median	37384000	0	37384000	1778	360	1689	3511	7264;7265	7265	475	2	9606
LTPEEEEILNK	1	0	Unmodified	1313.6715	0.6714618	235	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					2	18.469	18.469	2	0.0025362	6764	DP1061-10	111.46	68.857			NaN	NaN	NaN	0	0	Median	29100000	0	29100000	1779	235	1690	3512;3513	7266;7267;7268;7269;7270;7271	7267		6	9606
LTPSGYEWGR	0	1	Unmodified	1164.5564	0.55637247	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					17.043	17.043	2	0.039799	7080	DP1061-6	73.985	36.257			NaN	NaN	NaN	0	0	Median	6503600	0	6503600	1780	387	1691	3514	7272	7272		1	9606
LTPWEQFLEK	1	0	Unmodified	1289.6656	0.66558856	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				21.758	21.758	2	0.017741	14042	DP1061-7	83.647	32.301			NaN	NaN	NaN	0	0	Median	4617200	0	4617200	1781	491	1692	3515	7273;7274	7274		2	9606
LTQTSGETTHTDKEPVGEGK	2	0	Unmodified	2114.0128	0.012756116	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					12.41	12.41	3	0.0038792	2007	DP1061-6	84.581	56.866			NaN	NaN	NaN	0	0	Median	5885700	0	5885700	1782	182	1693	3516	7275	7275		1	9606
LTQTSGETTHTDKVPGGEDK	2	0	Unmodified	2099.9971	0.99710605	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.707	1	2	1			12.413	12.413	3;4	4.5043E-12	1971	DP1061-6	144.4	106.96			NaN	NaN	NaN	0	0	Median	77636000	0	77636000	1783	182	1694	3517;3518;3519;3520	7276;7277;7278;7279;7280;7281;7282	7276		7	9606
LTQTSGETTHTHTEPTGDGK	1	0	Unmodified	2096.9611	0.9610549	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.8	0.748	2	2	1			12.404	12.404	3;4	1.7773E-08	2463	DP1061-7	134.83	109.51			NaN	NaN	NaN	0	0	Median	132040000	0	132040000	1784	182	1695	3521;3522;3523;3524;3525	7283;7284;7285;7286;7287;7288;7289;7290;7291	7288		9	9606
LTQTSGQSTHTHKEPASGDEGIK	2	0	Unmodified	2408.1568	0.15679459	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				12.404	12.404	4	0.00099646	2452	DP1061-7	100.59	76.181			NaN	NaN	NaN	0	0	Median	16433000	0	16433000	1785	182	1696	3526	7292;7293	7292		2	9606
LTSDDVKEQIYK	2	0	Unmodified	1437.7351	0.73512469	239	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					2	21.017	21.017	2;3	0.00045359	9728	DP1061-10	113.61	72.208			NaN	NaN	NaN	0	0	Median	12321000	0	12321000	1786	239	1697	3527;3528	7294;7295;7296;7297	7295		4	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Oxidation (M)	2723.3259	0.32585053	265;98;328;81	P07437;P68371;Q9BVA1;Q13885;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain	no	no	0	1	0	3.67	0.471			1	2		20.562	20.562	2;3	4.0759E-13	12760	DP1061-9	99.838	99.838			3.6198	3.862	17.204	2	0	Median	178370000	29985000	148380000	1787	98;265;328;81	1698	3529;3530;3531	7298;7299;7300;7301;7302;7303;7304;7305;7306	7300	86	9	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Unmodified	2707.3309	0.33093591	265;98;328;81	P07437;P68371;Q9BVA1;Q13885;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain	no	no	0	0	0	4	0				1		22.499	22.499	3	0.00078905	15418	DP1061-9	95.138	67.062			NaN	NaN	NaN	0	0	Median	4717100	0	4717100	1788	98;265;328;81	1698	3532	7307;7308;7309;7310	7309		4	9606
LVAGSTDQLLSAFVPPEEPPLQPAR	0	1	Unmodified	2631.3908	0.39081727	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2.33	0.471		4	2			22.842	22.842	2;3	7.2911E-23	14864	DP1061-8	179.9	143.68			NaN	NaN	NaN	0	0	Median	24215000	0	24215000	1789	331	1699	3533;3534;3535;3536;3537;3538	7311;7312;7313;7314;7315;7316;7317;7318;7319;7320;7321;7322	7320		12	9606
LVAIVDVIDQNR	0	1	Unmodified	1353.7616	0.76161421	204	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	24.881	24.881	2	0.00020524	13514	DP1061-10	123.86	82.437			NaN	NaN	NaN	0	0	Median	64182000	0	64182000	1790	204	1700	3539	7323;7324	7323		2	9606
LVGSVNLFSDENVPR	0	1	Unmodified	1644.8471	0.84713476	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				19.687	19.687	2	5.3775E-06	11344	DP1061-7	148.78	106.59			NaN	NaN	NaN	0	0	Median	18053000	0	18053000	1791	466	1701	3540	7325;7326	7325		2	9606
LVILANNCPALR	0	1	Unmodified	1352.7598	0.75984008	254	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					2	23.132	23.132	2	0.00014708	11646	DP1061-10	167.33	134.91			NaN	NaN	NaN	0	0	Median	34025000	0	34025000	1792	254	1702	3541;3542	7327;7328;7329;7330;7331;7332;7333	7329		7	9606
LVLADLLEPVK	1	0	Unmodified	1208.738	0.73802523	474	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	3	1		1		1		22.152	22.152	2	0.0050453	14555	DP1061-7	97.565	48.769			NaN	NaN	NaN	0	0	Median	7390500	0	7390500	1793	474	1703	3543;3544	7334;7335;7336;7337;7338	7336		5	9606
LVLENYSDAPMTPK	1	0	Oxidation (M)	1592.7756	0.7756093	405	Q8IXJ9	ASXL1	Putative Polycomb group protein ASXL1	yes	yes	0	1	0	5	0					1	24.636	24.636	2	0.025616	13455	DP1061-10	71.349	23.161			NaN	NaN	NaN	0	0	Median	0	0	0	1794	405	1704	3545	7339	7339	503	1	9606
LVLSTLSGRPVK	1	1	Unmodified	1268.7816	0.78162138	545	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	1	4	0				1		15.694	15.694	2	0.024228	6538	DP1061-9	98.044	62.82			NaN	NaN	NaN	0	0	Median	8567100	0	8567100	1795	545	1705	3546	7340;7341	7340		2	9606
LVNHFVEEFK	1	0	Unmodified	1260.6503	0.65027285	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			2			16.978	16.978	2;3	0.0126	7493	DP1061-8	88.496	57.074			NaN	NaN	NaN	0	0	Median	51083000	0	51083000	1796	108	1706	3547;3548	7342;7343;7344;7345;7346	7342		5	9606
LVNHFVEEFKR	1	1	Unmodified	1416.7514	0.75138388	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			16.168	16.168	3	2.8413E-07	7502	DP1061-8	131.12	131.12			9.2097	9.5906	NaN	1	0	Median	105350000	15765000	89590000	1797	108	1707	3549	7347;7348;7349	7348		3	9606
LVPELDTIVPLESTK	1	0	Unmodified	1652.9237	0.92365374	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.08	0.276			11	1		25.636	25.636	2;3	4.3374E-37	12521	DP1061-8	193.22	153.43			0.90134	0.95076	13.968	4	0	Linear	517750000	278720000	239020000	1798	87	1708	3550;3551;3552;3553;3554;3555;3556;3557;3558;3559;3560;3561	7350;7351;7352;7353;7354;7355;7356;7357;7358;7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369;7370;7371;7372;7373;7374;7375;7376;7377;7378;7379	7354		30	9606
LVPTGLDFGQEGFTR	0	1	Unmodified	1635.8257	0.82567103	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2.33	0.471		2	1			20.366	20.366	2	6.446899999999999E-19	12209	DP1061-7	169.82	169.82			20.898	22.823	NaN	1	0	Median	58920000	2277300	56643000	1799	184	1709	3562;3563;3564	7380;7381;7382;7383;7384	7381		5	9606
LVPVHYDETEAER	0	1	Unmodified	1556.7471	0.74708636	420	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		14.756	14.756	3	0.05208	5503	DP1061-9	58.752	38.168			NaN	NaN	NaN	0	0	Median	7891600	0	7891600	1800	420	1710	3565	7385	7385		1	9606
LVPVHYDETEAEREK	1	1	Unmodified	1813.8846	0.88464248	420	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	1	4	0				1		14.034	14.034	4	0.0038802	4648	DP1061-9	82.925	60.598			NaN	NaN	NaN	0	0	Median	8183000	0	8183000	1801	420	1711	3566	7386	7386		1	9606
LVQSPNSYFMDVK	1	0	Oxidation (M)	1542.7388	0.73882986	177	Q71UM5;P42677	RPS27L;RPS27	40S ribosomal protein S27-like;40S ribosomal protein S27	yes	no	0	1	0	1	0	1					17.818	17.818	2	0.053448	7970	DP1061-6	66.267	30.725			NaN	NaN	NaN	0	0	Median	6275700	0	6275700	1802	177	1712	3567	7387	7387		1	9606
LVSSDPEINTK	1	0	Unmodified	1201.619	0.6190323	541	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		14.011	14.011	2	0.00013456	4514	DP1061-9	133.13	87.454			NaN	NaN	NaN	0	0	Median	15643000	0	15643000	1803	541	1713	3568	7388;7389	7389		2	9606
LVTEMGTYATQSALSSSRPTK	1	1	Oxidation (M)	2243.1104	0.11036167	215	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	1	2	0		1				15.318	15.318	3	0.0049229	6127	DP1061-7	87.654	56.04			NaN	NaN	NaN	0	0	Median	11776000	0	11776000	1804	215	1714	3569	7390	7390	278	1	9606
LVVDSHVQYR	0	1	Unmodified	1214.6408	0.6407708	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					14.331	14.331	2	0.021377	4135	DP1061-6	80.219	40.966			NaN	NaN	NaN	0	0	Median	3608300	0	3608300	1805	387	1715	3570	7391	7391		1	9606
LVVHCEQLDAQNQQR	0	1	Unmodified	1836.8901	0.89007898	54	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					14.271	14.271	3	4.0141E-06	4017	DP1061-6	153.09	112.88			NaN	NaN	NaN	0	0	Median	9789200	0	9789200	1806	54	1716	3571	7392;7393	7393		2	9606
LVVPASQCGSLIGK	1	0	Unmodified	1427.7806	0.7806351	354	Q15366;P57721	PCBP2;PCBP3	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	yes	no	0	0	0	4	0				1		17.209	17.209	2	0.00051828	8587	DP1061-9	110.84	78.518			NaN	NaN	NaN	0	0	Median	13361000	0	13361000	1807	354	1717	3572	7394;7395	7395		2	9606
LVVPATQCGSLIGK	1	0	Unmodified	1441.7963	0.79628516	353	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		17.559	17.559	2	0.021277	8965	DP1061-9	76.655	27.466			NaN	NaN	NaN	0	0	Median	7288100	0	7288100	1808	353	1718	3573	7396;7397	7397		2	9606
LVVWAADR	0	1	Unmodified	928.51305	0.51305109	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.303	17.303	2	1.1462E-05	7981	DP1061-8	130.04	79.913			0.94169	0.99574	7.6198	2	0	Median	280240000	145810000	134430000	1809	455	1719	3574;3575	7398;7399;7400;7401;7402;7403;7404;7405;7406;7407;7408	7402		11	9606
LWEVATAR	0	1	Unmodified	944.50797	0.50796571	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				16.714	16.714	2	0.018323	7980	DP1061-7	99.375	40.56			NaN	NaN	NaN	0	0	Median	0	0	0	1810	331	1720	3576	7409	7409		1	9606
LWGIPDQAR	0	1	Unmodified	1054.556	0.55597854	413	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				18.886	18.886	2	0.04254	10378	DP1061-7	74.127	40.331			NaN	NaN	NaN	0	0	Median	6065500	0	6065500	1811	413	1721	3577	7410;7411	7410		2	9606
LWIANYSLPR	0	1	Unmodified	1231.6713	0.67134264	46	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			20.322	20.322	2	0.0041293	11723	DP1061-8	109.71	73.319			NaN	NaN	NaN	0	0	Median	15286000	0	15286000	1812	46	1722	3578	7412;7413;7414	7413		3	9606
LYCNVDSNK	1	0	Unmodified	1111.4968	0.49680868	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				12.85	12.85	2	0.0074691	3058	DP1061-7	107.01	64.138			NaN	NaN	NaN	0	0	Median	6748400	0	6748400	1813	284	1723	3579	7415;7416;7417	7415		3	9606
LYSPSQIGAFVLMK	1	0	Oxidation (M)	1568.8273	0.82725094	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	3	0			1			21.175	21.175	2	0.0027643	12724	DP1061-8	81.771	58.393			1.426	1.5232	NaN	1	0	Median	25507000	8733000	16774000	1814	166	1724	3580	7418;7419;7420	7419	210	3	9606
LYTLVTYVPVTTFK	1	0	Unmodified	1643.9174	0.91744615	255	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					3	26.173	26.173	2	0.0011981	15909	DP1061-10	113.22	61.788			NaN	NaN	NaN	0	0	Median	10869000	0	10869000	1815	255	1725	3581;3582;3583	7421;7422;7423;7424	7424		4	9606
LYVGGLSQDISEADLQNQFSR	0	1	Unmodified	2339.1394	0.13935361	395	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	3	0.707		1	2	1		21.331	21.331	2	3.6814E-11	13867	DP1061-9	138.57	94.321			NaN	NaN	NaN	0	0	Median	0	0	0	1816	395	1726	3584;3585;3586;3587	7425;7426;7427;7428	7428		4	9606
MAAACRCLSLLLLSTCVALLL	0	1	Acetyl (Protein N-term);Oxidation (M)	2406.2507	0.25070044	509	Q9NRI7	PPY2P	Putative pancreatic polypeptide 2	yes	yes	1	1	1	3.5	0.5			1	1		20.398	20.398	3	0.021049	12660	DP1061-9	54.805	26.723			NaN	NaN	NaN	0	0	Median	23645000	0	23645000	1817	509	1727	3588;3589	7429;7430	7430	610	2	9606
MAALEVYVR	0	1	Oxidation (M)	1066.5481	0.54811597	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				16.662	16.662	2	1.8802E-06	6513	DP1061-6	139.68	71.297			0.88006	0.90333	4.0431	2	0	Median	652710000	353400000	299310000	1818	309	1728	3590;3591	7431;7432;7433;7434;7435;7436;7437;7438;7439	7434	396	9	9606
MAALEVYVR	0	1	Unmodified	1050.5532	0.55320134	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.95	17.95	2	0.0075329	8110	DP1061-6	85.212	11.084			0.90543	1.0133	NaN	1	0	Median	26562000	14789000	11774000	1819	309	1728	3592	7440;7441;7442;7443	7441		4	9606
MADALDNYVIR	0	1	Oxidation (M)	1295.618	0.61798644	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.08	0.266			12	1		25.206	25.206	2	0.00014187	8819	DP1061-8	123.35	86.908			0.90087	0.95691	6.5204	4	0	Median	248620000	127330000	121290000	1820	86	1729	3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605	7444;7445;7446;7447;7448;7449;7450;7451;7452;7453;7454;7455;7456;7457;7458;7459;7460;7461;7462;7463;7464;7465	7447	94	22	9606
MADALDNYVIR	0	1	Unmodified	1279.6231	0.62307182	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.838	18.838	2	1.8118E-10	9763	DP1061-8	144.77	91.088			0.95013	1.012	NaN	1	0	Median	71048000	35782000	35266000	1821	86	1729	3606	7466;7467;7468	7466		3	9606
MADEAVCVGPAPTSK	1	0	Oxidation (M)	1547.696	0.69597877	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.27	1.6	3		3	1	4	14.735	14.735	2	5.656699999999999E-28	5217	DP1061-8	184.98	155.21			0.85211	0.90314	1.6533	4	0	Median	404290000	214530000	189760000	1822	86	1730	3607;3608;3609;3610;3611;3612;3613;3614;3615;3616;3617	7469;7470;7471;7472;7473;7474;7475;7476;7477;7478;7479;7480;7481;7482;7483;7484;7485;7486;7487;7488;7489;7490;7491	7480	95	22	9606
MADWFVLLADDDK	1	0	Oxidation (M)	1553.7072	0.70719538	572				yes	yes	0	1	0	3	0			1			14.499	14.499	2	0.010948	5349	DP1061-8	81.972	40.267	+		NaN	NaN	NaN	0	0	Median	24933000	0	24933000	1823	572	1731	3618	7492;7493	7493	666	2	9606
MAEDEAETIGNLIEECGGLEK	1	0	Oxidation (M)	2323.0196	0.019557332	33	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	1	0	3	0			1			21.917	21.917	2	1.9117E-13	13733	DP1061-8	166.79	125.25			NaN	NaN	NaN	0	0	Median	5726000	0	5726000	1824	33	1732	3619	7494;7495;7496	7495	26	3	9606
MAFVNSVAKPPR	1	1	Oxidation (M)	1331.702	0.70199085	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	1	1	2	0		1				14.122	14.122	3	0.010052	4571	DP1061-7	79.23	46.371			NaN	NaN	NaN	0	0	Median	21617000	0	21617000	1825	334	1733	3620	7497	7497	436	1	9606
MAGQEIPEEGR	0	1	Oxidation (M)	1231.5503	0.55030081	546	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	1	0	3	0			1			13.368	13.368	2	0.0044151	3984	DP1061-8	94.692	57.216			NaN	NaN	NaN	0	0	Median	4779900	0	4779900	1826	546	1734	3621	7498	7498	642	1	9606
MALIGLGVSHPVLK	1	0	Oxidation (M)	1449.8378	0.83775605	138	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	4	0				1		17.327	17.327	2	0.022346	8777	DP1061-9	75.229	42.004			NaN	NaN	NaN	0	0	Median	4960700	0	4960700	1827	138	1735	3622	7499	7499	185	1	9606
MAQYKGAASEAGR	1	1	Acetyl (Protein N-term);Oxidation (M)	1396.6405	0.6405128	335	Q14320	FAM50A	Protein FAM50A	yes	yes	1	1	1	5	0					1	13.532	13.532	2	0.050091	4064	DP1061-10	43.297	17.738			NaN	NaN	NaN	0	0	Median	3731300	3731300	0	1828	335	1736	3623	7500	7500		1	9606
MATEVAADALGEEWK	1	0	Oxidation (M)	1635.745	0.74503745	246	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	0	5	0					3	21.889	21.889	2	2.9767E-06	10851	DP1061-10	149.23	96.5			NaN	NaN	NaN	0	0	Median	14538000	0	14538000	1829	246	1737	3624;3625;3626	7501;7502;7503;7504;7505	7502	304	5	9606
MATEVAADALGEEWKGYVVR	1	1	Oxidation (M)	2210.0678	0.067768574	246	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	5	0					1	26.027	26.027	3	0.00094455	14791	DP1061-10	103.17	75.967			NaN	NaN	NaN	0	0	Median	12843000	0	12843000	1830	246	1738	3627	7506	7506	304	1	9606
MAVTFIGNSTAIQELFK	1	0	Oxidation (M)	1884.9655	0.96553533	98	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	3.67	0.471			1	2		22.526	22.526	2;3	3.1256000000000004E-29	14427	DP1061-8	225.33	192.47			3.4442	3.6003	NaN	1	0	Median	118090000	2131600	115960000	1831	98	1739	3628;3629;3630	7507;7508;7509;7510;7511;7512;7513;7514	7508	120	8	9606
MAVTFIGNSTAIQELFK	1	0	Unmodified	1868.9706	0.97062071	98	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		23.223	23.223	2	2.2589999999999997E-50	16126	DP1061-9	252.96	208.41			NaN	NaN	NaN	0	0	Median	5329300	0	5329300	1832	98	1739	3631;3632	7515;7516;7517;7518;7519	7517		5	9606
MAVTFIGNSTAIQELFKR	1	1	Oxidation (M)	2041.0666	0.066646362	98	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	1	4	0				1		21.074	21.074	3	7.4438E-32	13527	DP1061-9	181.97	181.97			6.0903	6.2521	NaN	1	0	Median	16961000	2885900	14075000	1833	98	1740	3633	7520;7521	7521	120	2	9606
MAYVVDLDDEYADTDIPTTLIR	0	1	Oxidation (M)	2544.1942	0.19415088	311	Q13123	IK	Protein Red	yes	yes	0	1	0	3	0			2			22.228	22.228	2	1.9522E-28	14101	DP1061-8	211.75	191.4			NaN	NaN	NaN	0	0	Median	13922000	0	13922000	1834	311	1741	3634;3635	7522;7523;7524;7525	7523	417	4	9606
MCLFAGFQR	0	1	Oxidation (M)	1144.5158	0.51576998	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	2	0		1				18.804	18.804	2	0.053982	10367	DP1061-7	68.422	45.102			NaN	NaN	NaN	0	0	Median	4722700	0	4722700	1835	281	1742	3636	7526	7526		1	9606
MCLFAGFQR	0	1	Unmodified	1128.5209	0.52085536	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		2				19.975	19.975	2	0.029442	11808	DP1061-7	94.407	35.592			NaN	NaN	NaN	0	0	Median	0	0	0	1836	281	1742	3637;3638	7527;7528	7527		2	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	3.55	1.5	1	3	1	1	5	19.335	19.335	2;3	3.5643E-67	10277	DP1061-7	220.99	220.99			0.65979	0.64106	7.3316	6	0	Plateau	1154900000	689750000	465170000	1837	309	1743	3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649	7529;7530;7531;7532;7533;7534;7535;7536;7537;7538;7539;7540;7541;7542;7543;7544;7545;7546;7547;7548;7549;7550;7551;7552;7553;7554;7555;7556;7557;7558;7559;7560;7561	7550	397	33	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term)	2103.0055	0.0055026685	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	1.44	0.685	6	2	1			20.261	20.261	2;3	1.2828E-31	10340	DP1061-6	179.46	179.46			0.68599	0.74605	54.25	3	0	Median	106310000	67089000	39220000	1838	309	1743	3650;3651;3652;3653;3654;3655;3656;3657;3658	7562;7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577	7564		16	9606
MDEQALLGLNPNADSDFR	0	1	Acetyl (Protein N-term);Oxidation (M)	2062.9266	0.92658365	51	O43592	XPOT	Exportin-T	yes	yes	1	1	0	2	0		1				22.692	22.692	2	1.0807E-08	15114	DP1061-7	157.09	117.69			NaN	NaN	NaN	0	0	Median	4727800	0	4727800	1839	51	1744	3659	7578;7579;7580	7580	53	3	9606
MDEQALLGLNPNADSDFR	0	1	Acetyl (Protein N-term)	2046.9317	0.93166902	51	O43592	XPOT	Exportin-T	yes	yes	1	0	0	2	0		1				24.212	24.212	2	0.00040786	16787	DP1061-7	102.52	67.835			NaN	NaN	NaN	0	0	Median	0	0	0	1840	51	1744	3660	7581	7581		1	9606
MDFQHRPGGK	1	1	Acetyl (Protein N-term);Oxidation (M)	1229.5611	0.56114027	359	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	1	1	1	3	0			2			12.543	12.543	2;3	0.0079425	2917	DP1061-8	61.78	47.1			1.1141	1.1601	NaN	1	0	Median	40582000	18933000	21649000	1841	359	1745	3661;3662	7582;7583;7584	7583	469	3	9606
MDLFGDLPEPER	0	1	Acetyl (Protein N-term);Oxidation (M)	1475.6602	0.66024519	486	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	1	1	0	4	0				2		22.818	22.818	2	0.0033843	15756	DP1061-9	80.24	43.712			NaN	NaN	NaN	0	0	Median	2771400	0	2771400	1842	486	1746	3663;3664	7585;7586;7587	7585	583	3	9606
MDPNTIIEALR	0	1	Acetyl (Protein N-term);Oxidation (M)	1329.6599	0.65985126	75	O95373	IPO7	Importin-7	yes	yes	1	1	0	2	0		1				22.673	22.673	2	3.1571E-05	15041	DP1061-7	131.5	83.901			NaN	NaN	NaN	0	0	Median	5321500	0	5321500	1843	75	1747	3665	7588;7589	7588	72	2	9606
MDTDLETMDLDQGGEALAPR	0	1	2 Oxidation (M)	2208.9515	0.95147777	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	2	0	1	0	1					18.202	18.202	2	2.2532E-13	8405	DP1061-6	166.03	120.03			NaN	NaN	NaN	0	0	Median	6994900	0	6994900	1844	66	1748	3666	7590;7591;7592	7591	60;61	3	9606
MEAAAEPGNLAGVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1442.6824	0.68237762	564	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	1	1	0	5	0					1	17.848	17.848	2	0.0026504	7430	DP1061-10	79.693	46.315			NaN	NaN	NaN	0	0	Median	1795300	0	1795300	1845	564	1749	3667	7593;7594	7594	660	2	9606
MEDLTNPEDIR	0	1	Oxidation (M)	1347.5976	0.59764493	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	1	0	4	0				1		16.084	16.084	2	0.0037392	7085	DP1061-9	99.815	53.657			NaN	NaN	NaN	0	0	Median	3399300	0	3399300	1846	341	1750	3668	7595;7596	7595	453	2	9606
MEDSASASLSSAAATGTSTSTPAAPTAR	0	1	Acetyl (Protein N-term);Oxidation (M)	2654.1977	0.19773271	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	1	1	0	3	0			1			17.942	17.942	3	1.0312E-05	8714	DP1061-8	104.03	67.377			NaN	NaN	NaN	0	0	Median	16238000	0	16238000	1847	69	1751	3669	7597	7597	68	1	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);3 Oxidation (M)	2996.237	0.2370368	95	P06748	NPM1	Nucleophosmin	yes	yes	1	3	1	5	0					1	24.632	24.632	3	0.021169	13460	DP1061-10	54.15	33.854			NaN	NaN	NaN	0	0	Median	9674900	0	9674900	1848	95	1752	3670	7598;7599	7598	111;112;113;114	2	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);2 Oxidation (M)	2980.2421	0.24212218	95	P06748	NPM1	Nucleophosmin	yes	yes	1	2	1	4	0				1		22.55	22.55	3	0.001346	15149	DP1061-9	86.546	80.113			NaN	NaN	NaN	0	0	Median	26758000	0	26758000	1849	95	1752	3671	7600	7600	111;112;113;114	1	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);Oxidation (M)	2964.2472	0.24720756	95	P06748	NPM1	Nucleophosmin	yes	yes	1	1	1	4	0				1		23.274	23.274	3	0.013065	16199	DP1061-9	54.672	42.592			NaN	NaN	NaN	0	0	Median	3974800	0	3974800	1850	95	1752	3672	7601;7602;7603;7604	7601	111;112;113;114	4	9606
MEGGFGSDFGGSGSGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1533.6042	0.60418687	562	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	1	1	0	5	0					1	18.685	18.685	2	7.4325E-06	7998	DP1061-10	117.27	100.36			NaN	NaN	NaN	0	0	Median	3058400	0	3058400	1851	562	1753	3673	7605;7606	7605	659	2	9606
MEGPLSVFGDR	0	1	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	131	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	1	0	3	0			1			22.322	22.322	2	0.00058421	14262	DP1061-8	153.05	112.98			NaN	NaN	NaN	0	0	Median	4990800	0	4990800	1852	131	1754	3674	7607;7608	7607	179	2	9606
MEGQSVEELLAK	1	0	Acetyl (Protein N-term);Oxidation (M)	1390.665	0.66499622	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	1	1	0	4	0				1		20.824	20.824	2	0.00050573	13260	DP1061-9	104.43	60.783			NaN	NaN	NaN	0	0	Median	12893000	0	12893000	1853	350	1755	3675	7609;7610	7609	460	2	9606
MEGSGEQPGPQPQHPGDHR	0	1	Acetyl (Protein N-term);Oxidation (M)	2097.8923	0.89226382	532	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	1	1	0	3	0			1			12.616	12.616	3	0.015063	3067	DP1061-8	62.525	46.213			NaN	NaN	NaN	0	0	Median	7229900	0	7229900	1854	532	1756	3676	7611;7612	7612	636	2	9606
MEGVEEK	1	0	Acetyl (Protein N-term)	862.37423	0.37423392	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	1	0	0	5	0					1	15.698	15.698	1	0.00061008	6031	DP1061-10	113.5	76.405			NaN	NaN	NaN	0	0	Median	8520100	0	8520100	1855	132	1757	3677	7613	7613		1	9606
MELITILEK	1	0	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	344	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	1	0	2	0		1				24.223	24.223	2	0.015134	16713	DP1061-7	65.465	19.04			NaN	NaN	NaN	0	0	Median	2781400	0	2781400	1856	344	1758	3678	7614	7614	456	1	9606
MELSDANLQTLTEYLKK	2	0	Acetyl (Protein N-term);Oxidation (M)	2054.0242	0.024172425	219	P55060	CSE1L	Exportin-2	yes	yes	1	1	1	2	0		1				22.501	22.501	2	0.019262	14941	DP1061-7	66.784	39.454			NaN	NaN	NaN	0	0	Median	0	0	0	1857	219	1759	3679	7615	7615	282	1	9606
MENMAEEELLPLEKEEVEVAQVQVPTPAR	1	1	Acetyl (Protein N-term);2 Oxidation (M)	3381.632	0.63198811	399	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	1	2	1	2	0		1				22.4	22.4	3	0.016839	14836	DP1061-7	46.412	22.52			NaN	NaN	NaN	0	0	Median	2872600	0	2872600	1858	399	1760	3680	7616	7616	498;499	1	9606
MENQVLTPHVYWAQR	0	1	Acetyl (Protein N-term);Oxidation (M)	1928.9203	0.92031648	524	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	1	1	0	1	0	1					19.744	19.744	2	0.036909	10143	DP1061-6	57.885	20.46			NaN	NaN	NaN	0	0	Median	0	0	0	1859	524	1761	3681	7617	7617		1	9606
MEQQQLEEQK	1	0	Unmodified	1289.5922	0.59216562	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				12.827	12.827	2	1.0112E-05	3069	DP1061-7	191.17	148.3			NaN	NaN	NaN	0	0	Median	4313100	0	4313100	1860	512	1762	3682	7618;7619	7619		2	9606
MEQVEILR	0	1	Acetyl (Protein N-term)	1058.543	0.54303059	291	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	1	0	0	2	0		1				19.797	19.797	2	0.041832	11589	DP1061-7	58.981	16.382			NaN	NaN	NaN	0	0	Median	0	0	0	1861	291	1763	3683	7620	7620		1	9606
MESEMETQSAR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1371.5282	0.52824474	511	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	1	2	0	5	0					1	12.848	12.848	2	0.011103	3538	DP1061-10	72.006	49.426			NaN	NaN	NaN	0	0	Median	1943300	0	1943300	1862	511	1764	3684	7621;7622;7623	7623	611;612	3	9606
METMASPGKDNYR	1	1	Acetyl (Protein N-term);2 Oxidation (M)	1572.6548	0.65484224	56	O60684	KPNA6	Importin subunit alpha-7	yes	yes	1	2	1	3	0			2			13.177	13.177	2	0.011864	3664	DP1061-8	71.03	28.682			NaN	NaN	NaN	0	0	Median	0	0	0	1863	56	1765	3685;3686	7624;7625	7624	55;56	2	9606
METVVTSPMEGTVR	0	1	2 Oxidation (M)	1567.7222	0.72219352	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	0	2	0		1				14.469	14.469	2	0.05169	5128	DP1061-7	59.265	8.1728			NaN	NaN	NaN	0	0	Median	0	0	0	1864	116	1766	3687	7626	7626		1	9606
MEVKPPPGRPQPDSGR	1	2	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	208	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	4	0				1		13.229	13.229	3	0.0022005	3637	DP1061-9	79.337	56.482			NaN	NaN	NaN	0	0	Median	11773000	0	11773000	1865	208	1767	3688	7627;7628	7627	255	2	9606
MGAMVAFR	0	1	2 Oxidation (M)	913.41499	0.4149933	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	2	0	1	0	1					13.954	13.954	2	0.029071	3748	DP1061-6	60.358	31.83			0.88251	1.0063	NaN	1	0	Median	16798000	9174100	7623500	1866	34	1768	3689	7629	7629	33;34	1	9606
MGANNLER	0	1	Unmodified	903.42325	0.4232498	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			12.726	12.726	2	0.0067533	3110	DP1061-8	113.89	68.808			NaN	NaN	NaN	0	0	Median	16315000	0	16315000	1867	209	1769	3690	7630	7630		1	9606
MGANSLER	0	1	Unmodified	876.41235	0.41235077	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	no	0	0	0	3	0			1			12.951	12.951	2	0.008891	3379	DP1061-8	89.296	56.686			2.9596	3.1801	NaN	1	0	Median	41316000	11371000	29945000	1868	209	1770	3691	7631;7632	7632		2	9606
MGFTEVTPVTGASLR	0	1	Oxidation (M)	1580.7868	0.78684269	222	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	1	0	2	0		1				17.913	17.913	2	3.2697E-06	9558	DP1061-7	145.23	113.24			NaN	NaN	NaN	0	0	Median	15893000	0	15893000	1869	222	1771	3692	7633;7634	7633	287	2	9606
MGGMEGPFGGGMENMGR	0	1	4 Oxidation (M)	1777.6528	0.6528101	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	4	0	3	0			2			14.696	14.696	2	0.0021839	5383	DP1061-8	86.114	85.124			2.1593	2.3473	NaN	1	0	Median	20909000	3636000	17273000	1870	209	1772	3693;3694	7635;7636;7637;7638	7637	261;262;263;264	4	9606
MGGMEGPFGGGMENMGR	0	1	3 Oxidation (M)	1761.6579	0.65789548	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	3	0	3	0			2			16.257	16.257	2	0.036347	6992	DP1061-8	56.122	48.367			NaN	NaN	NaN	0	0	Median	0	0	0	1871	209	1772	3695;3696	7639;7640	7639	261;262;263;264	2	9606
MGGMVSFR	0	1	2 Oxidation (M)	915.39426	0.39425786	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					13.487	13.487	2	0.028871	3077	DP1061-6	60.478	29.174			0.90603	0.87497	NaN	1	0	Median	984160000	522620000	461530000	1872	309	1773	3697	7641	7641	398;399	1	9606
MGGMVSFR	0	1	Unmodified	883.40443	0.40442862	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.574	16.574	2	0.0074426	6451	DP1061-6	91.9	40.328			0.84034	0.92234	NaN	1	0	Median	42785000	23120000	19665000	1873	309	1773	3698	7642;7643;7644;7645	7643		4	9606
MGHSAPLTNIR	0	1	Oxidation (M)	1211.6081	0.60809046	422	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	1	0	1	0	1					12.904	12.904	3	0.01059	2561	DP1061-6	69.451	33.909			NaN	NaN	NaN	0	0	Median	7838400	0	7838400	1874	422	1774	3699	7646;7647	7647	523	2	9606
MGIYYIPVLGPAPR	0	1	Oxidation (M)	1561.8327	0.83267067	468	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	1	0	3	0			1			21.223	21.223	2	0.011796	12935	DP1061-8	78.934	45.705			NaN	NaN	NaN	0	0	Median	8476300	0	8476300	1875	468	1775	3700	7648;7649	7648	565	2	9606
MGLAMGGGGGASFDR	0	1	2 Oxidation (M)	1414.5969	0.59693343	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			14.887	14.887	2	0.00016948	5699	DP1061-8	93.345	76.967			2.6559	2.8696	NaN	1	0	Median	29326000	8050200	21276000	1876	209	1776	3701	7650;7651;7652;7653;7654	7652	265;266	5	9606
MGLAMGGGGGASFDR	0	1	Oxidation (M)	1398.602	0.6020188	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			16.515	16.515	2	0.008175	7243	DP1061-8	84.658	49.39			NaN	NaN	NaN	0	0	Median	0	0	0	1877	209	1776	3702	7655	7655	265;266	1	9606
MGVPYCIIK	1	0	Oxidation (M)	1095.5457	0.54567312	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	1	0	4	0				1		17.13	17.13	2	0.043932	8466	DP1061-9	71.296	32.504			NaN	NaN	NaN	0	0	Median	14466000	0	14466000	1878	242	1777	3703	7656	7656		1	9606
MHLYLGAAK	1	0	Oxidation (M)	1018.527	0.52698659	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1.33	0.471	2	1				13.524	13.524	2;3	4.8571E-15	3116	DP1061-6	158.38	107.03			0.95599	1.0346	5.1354	2	0	Median	802170000	414280000	387890000	1879	309;34	1778	3704;3705;3706	7657;7658;7659;7660;7661;7662;7663;7664	7658	35	8	9606
MHLYLGAAK	1	0	Unmodified	1002.5321	0.53207197	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					15.243	15.243	2	0.00026491	4938	DP1061-6	124.37	97.412			0.95598	1.0686	NaN	1	0	Median	125340000	57115000	68229000	1880	309;34	1778	3707	7665;7666	7666		2	9606
MIAGQVLDINLAAEPK	1	0	Oxidation (M)	1697.9022	0.9022068	99	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		19.595	19.595	2	5.5259E-08	11613	DP1061-9	164.48	108.27			NaN	NaN	NaN	0	0	Median	36920000	0	36920000	1881	99	1779	3708	7667;7668	7668	123	2	9606
MIAGQVLDINLAAEPK	1	0	Unmodified	1681.9073	0.90729217	99	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.367	20.367	2	1.6791E-07	12694	DP1061-9	141.58	105.25			NaN	NaN	NaN	0	0	Median	8119100	0	8119100	1882	99	1779	3709	7669;7670	7670		2	9606
MIDMLAANSGR	0	1	2 Oxidation (M)	1209.5482	0.54819232	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	2	0	1.5	0.5	1	1				13.874	13.874	2	0.0010723	4308	DP1061-7	112.36	55.18			NaN	NaN	NaN	0	0	Median	22877000	0	22877000	1883	396	1780	3710;3711	7671;7672;7673	7673	490;491	3	9606
MIEFVVR	0	1	Oxidation (M)	908.47897	0.47897377	39	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	1	0	2	0		1				17.282	17.282	2	0.013625	8753	DP1061-7	100.74	48.443			NaN	NaN	NaN	0	0	Median	13595000	0	13595000	1884	39	1781	3712	7674;7675	7675	44	2	9606
MINTDLSR	0	1	Oxidation (M)	964.46478	0.46478027	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	4	0				1		13.674	13.674	2	0.014685	4165	DP1061-9	82.279	40.977			27.543	29.447	NaN	1	0	Median	235580000	10739000	224850000	1885	162	1782	3713	7676	7676	203	1	9606
MISAAQLLDELMGR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1620.7851	0.78512813	73	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	2	0	4	0				2		25.436	25.436	2	0.00091062	18338	DP1061-9	101.93	60.529			NaN	NaN	NaN	0	0	Median	0	0	0	1886	73	1783	3714;3715	7677;7678	7677	69;70	2	9606
MISSCTTRKMAEQEQR	1	2	Acetyl (Protein N-term);Oxidation (M)	2012.9078	0.90777923	385	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	1	1	2	2	0		1				21.013	21.013	2	0.032576	13162	DP1061-7	54.471	10.866			NaN	NaN	NaN	0	0	Median	6506600	6506600	0	1887	385	1784	3716	7679	7679		1	9606
MIVDPVEPHGEMK	1	0	2 Oxidation (M)	1512.6953	0.69525049	315	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	2	0	2	0		1				13.761	13.761	3	0.018427	4242	DP1061-7	61.532	27.564			NaN	NaN	NaN	0	0	Median	6204300	0	6204300	1888	315	1785	3717	7680	7680	419;420	1	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	1	1	Oxidation (M)	3275.6173	0.61726475	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			21.866	21.866	3	6.1136E-05	13664	DP1061-8	97.639	28.705			NaN	NaN	NaN	0	0	Median	8176000	0	8176000	1889	108	1786	3718	7681;7682;7683;7684;7685	7684	131	5	9606
MKETAEAYLGK	2	0	Oxidation (M)	1255.6118	0.61183843	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	1	1	3	0			1			13.485	13.485	2	0.023414	4120	DP1061-8	103.22	53.798			NaN	NaN	NaN	0	0	Median	6376800	0	6376800	1890	112	1787	3719	7686;7687	7687	136	2	9606
MKETAENYLGHTAK	2	0	Oxidation (M)	1607.7614	0.76135622	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			12.673	12.673	3	2.0229E-05	3031	DP1061-8	113.43	113.43			1.7635	2.0129	NaN	1	0	Median	57749000	21526000	36223000	1891	166	1788	3720	7688;7689;7690;7691	7689	211	4	9606
MKETAENYLGHTAK	2	0	Unmodified	1591.7664	0.7664416	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	3	0			2			13.3	13.3	3	0.021443	3815	DP1061-8	69.878	47.403			NaN	NaN	NaN	0	0	Median	0	0	0	1892	166	1788	3721;3722	7692;7693	7692		2	9606
MKFNPFVTSDR	1	1	Oxidation (M)	1356.6496	0.64962092	227	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	1	1	5	0					1	24.85	24.85	3	0.010304	13734	DP1061-10	80.834	48.8			NaN	NaN	NaN	0	0	Median	17137000	0	17137000	1893	227	1789	3723	7694;7695	7694	291	2	9606
MKFNPFVTSDR	1	1	Acetyl (Protein N-term);Oxidation (M)	1398.6602	0.66018561	227	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	1	1	1	5	0					1	23.733	23.733	2	0.048019	12377	DP1061-10	51.927	11.338			NaN	NaN	NaN	0	0	Median	0	0	0	1894	227	1789	3724	7696	7696	291	1	9606
MKLNISFPATGCQK	2	0	Oxidation (M)	1609.7956	0.79563323	246	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	5	0					1	24.141	24.141	2	0.0051655	12867	DP1061-10	107.09	37.438			NaN	NaN	NaN	0	0	Median	0	0	0	1895	246	1790	3725	7697	7697	305	1	9606
MKLPEHPEGGEPEDDEAPAK	2	0	Oxidation (M)	2190.9739	0.97392777	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	1	1	4	0				1		13.113	13.113	3	0.0041382	3356	DP1061-9	89.846	72.997			NaN	NaN	NaN	0	0	Median	6772900	0	6772900	1896	519	1791	3726	7698;7699	7699	632	2	9606
MKTEAELAKEEQEHLR	2	1	Oxidation (M)	1956.9575	0.95748984	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	1	2	2	0		1				13.954	13.954	4	0.00019467	4378	DP1061-7	103.79	81.973			NaN	NaN	NaN	0	0	Median	19220000	0	19220000	1897	268	1792	3727	7700;7701	7701	332	2	9606
MKTPVQYSQQQNSPQK	2	0	Oxidation (M)	1906.9207	0.92071041	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	1	0	1					12.513	12.513	3	2.1138E-07	2136	DP1061-6	124.29	77.394			NaN	NaN	NaN	0	0	Median	3626800	0	3626800	1898	182	1793	3728	7702;7703	7703	226	2	9606
MLAIYDGFDGFAK	1	0	Oxidation (M)	1462.6803	0.68025235	285	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	1	0	2	0		1				20.821	20.821	2	0.03207	12884	DP1061-7	69.65	27.65			NaN	NaN	NaN	0	0	Median	0	0	0	1899	285	1794	3729	7704	7704		1	9606
MLDMGFEPQIR	0	1	2 Oxidation (M)	1367.6214	0.62135726	130;440;32	P17844;O00571;O15523;Q92841	DDX5;DDX3X;DDX3Y;DDX17	Probable ATP-dependent RNA helicase DDX5;ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX17	no	no	0	2	0	3	0			1			17.977	17.977	2	0.052317	8784	DP1061-8	60.398	33.956			NaN	NaN	NaN	0	0	Median	0	0	0	1900	130;32;440	1795	3730	7705	7705	173;174	1	9606
MLGALYMR	0	1	2 Oxidation (M)	985.47251	0.47250818	416	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	2	0	4	0				1		15.522	15.522	2	0.015859	6474	DP1061-9	76.847	40.966			NaN	NaN	NaN	0	0	Median	12047000	0	12047000	1901	416	1796	3731	7706;7707	7707	517;518	2	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	1	0	4	0				1		20.303	20.303	2	0.00015514	12516	DP1061-9	108.67	79.959			6.5088	6.8038	NaN	1	0	Median	33335000	4130700	29204000	1902	213	1797	3732	7708;7709	7708	271	2	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term)	1360.6697	0.66968766	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	0	0	4	0				1		22.183	22.183	2	9.936E-05	14888	DP1061-9	117.02	71.424			NaN	NaN	NaN	0	0	Median	4960200	0	4960200	1903	213	1797	3733	7710;7711	7710		2	9606
MLLDPMGGIVMTNDGNAILR	0	1	3 Oxidation (M)	2178.0483	0.048295461	195	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	3	0	3	0			1			19.733	19.733	2	0.02488	10969	DP1061-8	60.401	21.237			NaN	NaN	NaN	0	0	Median	0	0	0	1904	195	1798	3734	7712	7712	245;246;247	1	9606
MLPTIIADNAGYDSADLVAQLR	0	1	Oxidation (M)	2362.1839	0.18386096	270	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	3	0			1			22.27	22.27	2	0.00039797	14193	DP1061-8	88.507	50.142			NaN	NaN	NaN	0	0	Median	0	0	0	1905	270	1799	3735	7713	7713	339	1	9606
MLQNVTPHNK	1	0	Acetyl (Protein N-term);Oxidation (M)	1238.6078	0.60775611	143	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	1	1	0	3	0			1			14.26	14.26	2	0.03736	4952	DP1061-8	51.949	14.4			NaN	NaN	NaN	0	0	Median	7737500	0	7737500	1906	143	1800	3736	7714	7714		1	9606
MLSALLTGVNR	0	1	Oxidation (M)	1189.6489	0.64889264	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				17.98	17.98	2	0.00073723	9668	DP1061-7	160.59	113.52			NaN	NaN	NaN	0	0	Median	32098000	0	32098000	1907	289	1801	3737	7715;7716	7716	361	2	9606
MLWENGINGILADEMGLGK	1	0	2 Oxidation (M)	2091.9969	0.99691182	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	2	0	2	0		1				21.9	21.9	2	2.2473E-05	14256	DP1061-7	119.01	90.251			NaN	NaN	NaN	0	0	Median	2478200	0	2478200	1908	512	1802	3738	7717;7718;7719	7718	619;620	3	9606
MMAIAPNVTVMVGELVGAR	0	1	3 Oxidation (M)	2005.9999	0.9998887	547	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	3	0	3	0			2			20.287	20.287	2	0.016323	11704	DP1061-8	67.275	33.493			NaN	NaN	NaN	0	0	Median	0	0	0	1909	547	1803	3739;3740	7720;7721	7721	643;644;645	2	9606
MMEEFVPHSK	1	0	2 Oxidation (M)	1265.542	0.54204431	543	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	2	0	2	0		1				13.026	13.026	3	0.0374	3321	DP1061-7	40.715	23.689			1.1842	1.2407	NaN	1	0	Median	8473800	3133100	5340700	1910	543	1804	3741	7722	7722		1	9606
MMGGAGPGSSLEAR	0	1	2 Oxidation (M)	1351.586	0.58603439	78	O95785	WIZ	Protein Wiz	yes	yes	0	2	0	2	0		1				13.431	13.431	2	0.0015193	3704	DP1061-7	91.961	63.234			NaN	NaN	NaN	0	0	Median	9713500	0	9713500	1911	78	1805	3742	7723;7724	7723	74;75	2	9606
MMGHRPVLVLSQNTK	1	1	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	195	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	2	1	3	0			1			15.13	15.13	3	0.046863	6048	DP1061-8	44.807	16.837			NaN	NaN	NaN	0	0	Median	0	0	0	1912	195	1806	3743	7725	7725		1	9606
MMTLHQQCIR	0	1	2 Oxidation (M)	1348.605	0.60499569	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	2	0	2	0		1				12.456	12.456	3	0.00064856	2592	DP1061-7	112.11	80.922			NaN	NaN	NaN	0	0	Median	19054000	0	19054000	1913	334	1807	3744	7726;7727	7727	437;438	2	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	2 Oxidation (M)	2881.2146	0.21458552	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.3	0.64	8	1	1			22.548	22.548	3	3.9911E-22	12411	DP1061-6	132.65	132.65			0.63835	0.69866	23.96	5	0	Median	210590000	119210000	91384000	1914	309	1808	3745;3746;3747;3748;3749;3750;3751;3752;3753;3754	7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761;7762	7733	400;401	35	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	Oxidation (M)	2865.2197	0.2196709	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.75	0.829	2	1	1			21.894	21.894	3	7.0607E-44	13300	DP1061-6	182	182			0.58401	0.66006	1.301	2	0	Median	35696000	21084000	14612000	1915	309	1808	3755;3756;3757;3758	7763;7764;7765;7766;7767;7768;7769;7770;7771;7772;7773;7774	7767	400;401	12	9606
MNDTVTIR	0	1	Acetyl (Protein N-term);Oxidation (M)	1006.4753	0.47534495	250	P62847	RPS24	40S ribosomal protein S24	yes	yes	1	1	0	5	0					1	15.984	15.984	2	0.0061705	5861	DP1061-10	77.282	40.262			NaN	NaN	NaN	0	0	Median	41249000	0	41249000	1916	250	1809	3759	7775;7776	7776	310	2	9606
MNMVKRIMGR	1	2	Acetyl (Protein N-term);2 Oxidation (M)	1308.6465	0.64646658	410	Q8IZQ1	WDFY3	WD repeat and FYVE domain-containing protein 3	yes	yes	1	2	2	2.5	0.5		1	1			22.176	22.176	2	0.020239	14495	DP1061-7	64.207	24.149			NaN	NaN	NaN	0	0	Median	9085700	0	9085700	1917	410	1810	3760;3761	7777;7778	7777	510;511	2	9606
MNSGPPGLGGK	1	0	Oxidation (M)	1029.4913	0.49132937	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	1	0	4	0				1		12.919	12.919	2	0.0035222	3218	DP1061-9	101.46	69.524			NaN	NaN	NaN	0	0	Median	7239400	0	7239400	1918	350	1811	3762	7779	7779	461	1	9606
MNVEEDVQEEQSK	1	0	Oxidation (M)	1579.6672	0.66718106	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	1	0	2	0		1				14.178	14.178	2	1.9048E-06	4700	DP1061-7	187.31	150.63			NaN	NaN	NaN	0	0	Median	7458000	0	7458000	1919	268	1812	3763	7780;7781	7780	333	2	9606
MNYSGDQGQTIR	0	1	Oxidation (M)	1384.6041	0.60412729	379	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	1	0	1	0	1					13.231	13.231	2	0.020461	2987	DP1061-6	77.662	21.404			NaN	NaN	NaN	0	0	Median	0	0	0	1920	379	1813	3764	7782	7782	482	1	9606
MPCESSPPESADTPTSTR	0	1	Oxidation (M)	1964.8092	0.80917063	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0.816	1	1	1			13.48	13.48	2	1.1957000000000001E-29	4050	DP1061-8	225.79	174.03			NaN	NaN	NaN	0	0	Median	22004000	0	22004000	1921	182	1814	3765;3766;3767	7783;7784;7785;7786;7787;7788;7789;7790	7790	227	8	9606
MPCESSPPESADTPTSTR	0	1	Unmodified	1948.8143	0.814256	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				14.369	14.369	2	1.4739999999999998E-21	4103	DP1061-6	210.64	196.19			NaN	NaN	NaN	0	0	Median	8204100	0	8204100	1922	182	1814	3768;3769	7791;7792;7793;7794	7791		4	9606
MPCQSLQPEPINTPTHTK	1	0	Oxidation (M)	2093.9874	0.98740976	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2.5	1.12	1	1	1	1		14.507	14.507	3	1.5685E-09	4173	DP1061-6	170.47	143.92			NaN	NaN	NaN	0	0	Median	72715000	0	72715000	1923	182	1815	3770;3771;3772;3773	7795;7796;7797;7798;7799;7800;7801;7802;7803	7795	228	9	9606
MPCQSLQPEPINTPTHTK	1	0	Unmodified	2077.9925	0.99249514	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.33	0.471	2	1				15.3	15.3	3	2.8345E-06	4988	DP1061-6	119.51	83.38			NaN	NaN	NaN	0	0	Median	22779000	0	22779000	1924	182	1815	3774;3775;3776	7804;7805;7806;7807;7808	7806		5	9606
MPQTMTVCQVK	1	0	2 Oxidation (M)	1353.6091	0.60907802	408	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	2	0	1	0	1					12.604	12.604	2	0.012049	2210	DP1061-6	76.943	44.623			NaN	NaN	NaN	0	0	Median	1684300	0	1684300	1925	408	1816	3777	7809	7809	507;508	1	9606
MPVIKPDIANWELSVK	2	0	Oxidation (M)	1854.9914	0.99135615	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3.33	0.471			2	1		19.236	19.236	2;3	5.115E-07	10245	DP1061-8	121.95	121.95			0.85465	0.97554	14.965	3	0	Median	247900000	127830000	120070000	1926	86	1817	3778;3779;3780	7810;7811;7812;7813;7814;7815;7816;7817;7818;7819;7820;7821;7822	7818	96	13	9606
MPVIKPDIANWELSVK	2	0	Unmodified	1838.9964	0.99644153	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.119	20.119	3	3.999E-05	11353	DP1061-8	95.755	95.755			0.75291	0.85941	NaN	1	0	Median	58638000	28357000	30282000	1927	86	1817	3781	7823;7824;7825;7826	7823		4	9606
MPWSITEKDMK	2	0	2 Oxidation (M)	1396.6367	0.63667298	544	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	2	1	2	0		1				13.362	13.362	2	0.021728	3600	DP1061-7	51.528	6.1598			27.983	31.478	NaN	1	0	Median	92919000	3690500	89228000	1928	544	1818	3782	7827	7827	639;640	1	9606
MQGQEAVLAMSSR	0	1	2 Oxidation (M)	1438.6544	0.65444831	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	2	0	2	0		1				13.866	13.866	2	0.020014	4353	DP1061-7	71.153	23.966			NaN	NaN	NaN	0	0	Median	0	0	0	1929	356	1819	3783	7828	7828	466;467	1	9606
MQGSLEAHVNGFR	0	1	Oxidation (M)	1460.683	0.68304632	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	1	0	1					15	15	3	0.001031	4763	DP1061-6	90.793	54.509			NaN	NaN	NaN	0	0	Median	27189000	0	27189000	1930	559	1820	3784	7829;7830	7829	654	2	9606
MQLDNPSK	1	0	Unmodified	931.44332	0.44331654	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				13.214	13.214	2	1.105E-14	2871	DP1061-6	158.07	107.37			0.78688	0.87958	NaN	1	0	Median	215000000	126830000	88171000	1931	309	1821	3785;3786	7831;7832;7833;7834;7835	7834		5	9606
MQLPSAAGLHPTGHQSK	1	0	Oxidation (M)	1774.8785	0.87845166	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	1	0	4	0				2		13.308	13.308	3;4	0.016107	3676	DP1061-9	65.107	35.035			NaN	NaN	NaN	0	0	Median	13303000	0	13303000	1932	350	1822	3787;3788	7836;7837;7838	7836	462	3	9606
MQPPTESQVTYLR	0	1	Oxidation (M)	1564.7555	0.75554256	406	Q8IY37	DHX37	Probable ATP-dependent RNA helicase DHX37	yes	yes	0	1	0	2	0		1				16.06	16.06	2	0.0034593	7018	DP1061-7	91.658	32.232			NaN	NaN	NaN	0	0	Median	6394000	0	6394000	1933	406	1823	3789	7839;7840	7840	504	2	9606
MREIVHLQAGQCGNQIGAK	1	1	Unmodified	2109.0572	0.057161084	265;81	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	1	3.5	0.5			1	1		15.021	15.021	3	2.0957E-13	5744	DP1061-9	168.16	0			NaN	NaN	NaN	0	0	Median	17603000	0	17603000	1934	265;81	1824	3790;3791	7841;7842;7843;7844	7843		4	9606
MRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	2	1	2 Oxidation (M)	3732.7869	0.7869424	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	2	2	0		2				15.758	15.758	4;5	3.8631E-08	6740	DP1061-7	88.045	69.775			NaN	NaN	NaN	0	0	Median	31894000	0	31894000	1935	339	1825	3792;3793	7845;7846;7847;7848;7849;7850;7851	7848	448;449	7	9606
MSATFIGNSTAIQELFK	1	0	Oxidation (M)	1872.9291	0.92914983	265;328	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.33	0.471			2	1		21.956	21.956	2;3	7.569799999999999E-81	13800	DP1061-8	232.6	52.671			4.6125	4.8739	5.1136	2	0	Median	164120000	28484000	135630000	1936	265;328	1826	3794;3795;3796	7852;7853;7854;7855;7856;7857;7858;7859	7852	327	8	9606
MSATFIGNSTAIQELFKR	1	1	Oxidation (M)	2029.0303	0.030260856	265;328	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	1	3.5	0.5			1	1		20.569	20.569	3	3.0835E-08	12822	DP1061-9	151.59	16.836			NaN	NaN	NaN	0	0	Median	23988000	0	23988000	1937	265;328	1827	3797;3798	7860;7861;7862	7861	327	3	9606
MSGDLSSNVTVSVTSSTISSNVASK	1	0	Oxidation (M)	2473.1854	0.18537711	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1	0	1					18.078	18.078	2	1.2533E-110	8256	DP1061-6	309.81	282.47		+	NaN	NaN	NaN	0	0	Median	5363800	5363800	0	1938	20	1828	3799	7863;7864;7865;7866	7866	16	4	9606
MSINAEEVVVGDLVEVK	1	0	Oxidation (M)	1845.9394	0.93938016	84	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	1	0	2	0		1				21.131	21.131	2	0.011045	13288	DP1061-7	79.885	33.089			NaN	NaN	NaN	0	0	Median	2728100	0	2728100	1939	84	1829	3800	7867;7868	7867	89	2	9606
MSMKEVDEQMLNVQNK	2	0	3 Oxidation (M)	1970.8747	0.87474777	265;98;328	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	3	1	3.5	0.5			2	2		13.352	13.352	2;3	2.4837E-14	3864	DP1061-8	148.18	148.18			4.4793	4.895	18.19	2	0	Median	111460000	19600000	91859000	1940	98;265;328	1830	3801;3802;3803;3804	7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881	7871	119;121;122	13	9606
MSMKEVDEQMLNVQNK	2	0	2 Oxidation (M)	1954.8798	0.87983315	265;98;328	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	2	1	4	0				1		14.095	14.095	3	0.0016872	4651	DP1061-9	88.311	56.992			NaN	NaN	NaN	0	0	Median	7268900	0	7268900	1941	98;265;328	1830	3805	7882	7882	119;121;122	1	9606
MSQAEFEKAAEEVR	1	1	Acetyl (Protein N-term);Oxidation (M)	1681.7618	0.76175015	97	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	1	1	3	0			1			15.016	15.016	2	0.011511	5903	DP1061-8	68.657	8.1385			NaN	NaN	NaN	0	0	Median	5015500	0	5015500	1942	97	1831	3806	7883;7884	7883	117	2	9606
MSQEEVNVFR	0	1	Oxidation (M)	1253.571	0.57103625	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	2	0		1				15.918	15.918	2	0.0013281	6801	DP1061-7	149.57	100.48			NaN	NaN	NaN	0	0	Median	20143000	0	20143000	1943	396	1832	3807	7885	7885	492	1	9606
MSQEEVNVFR	0	1	Unmodified	1237.5761	0.57612163	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				16.839	16.839	2	0.012733	8124	DP1061-7	88.37	51.974			NaN	NaN	NaN	0	0	Median	5013500	0	5013500	1944	396	1832	3808	7886	7886		1	9606
MSQVAPSLSALIGEAVGAR	0	1	Oxidation (M)	1871.9775	0.977497	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	3.33	0.471			2	1		22.812	22.812	2;3	3.6639E-05	14848	DP1061-8	111.93	77.65			NaN	NaN	NaN	0	0	Median	20421000	0	20421000	1945	31	1833	3809;3810;3811	7887;7888;7889;7890;7891;7892	7890	21	6	9606
MSSKPINFSVILK	2	0	Oxidation (M)	1478.8167	0.81668625	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	1	1	2	0		1				17.78	17.78	3	0.0017516	9370	DP1061-7	94.023	58.429			NaN	NaN	NaN	0	0	Median	22085000	0	22085000	1946	555	1834	3812	7893;7894	7894	649	2	9606
MSSTFIGNSTAIQELFK	1	0	Oxidation (M)	1888.9241	0.92406445	320	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	1	0	3.5	0.5			1	1		21.983	21.983	2	0.0055493	14941	DP1061-9	88.163	48.583			NaN	NaN	NaN	0	0	Median	6628800	0	6628800	1947	320	1835	3813;3814	7895;7896;7897	7896	428	3	9606
MSVDAVEIETLRK	1	1	Oxidation (M)	1505.7759	0.77594365	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	1	2	0		1				16.163	16.163	3	0.0060176	7149	DP1061-7	65.495	65.495			1.1447	1.2304	NaN	1	0	Median	22802000	12411000	10391000	1948	269	1836	3815	7898;7899	7899	338	2	9606
MSVELEEALPVTTAEGMAK	1	0	2 Oxidation (M)	2036.9646	0.96460864	434	Q92522	H1FX	Histone H1x	yes	yes	0	2	0	3	0			1			13.264	13.264	3	0.053334	3798	DP1061-8	41.348	13.824			NaN	NaN	NaN	0	0	Median	4930200	0	4930200	1949	434	1837	3816	7900	7900		1	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Oxidation (M)	2242.2031	0.20313984	95	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4	1.28	1	2	2	3	9	24.947	24.947	2;3	6.935199999999999E-59	16404	DP1061-9	204.82	204.82			44.211	47.268	NaN	1	0	Median	1260700000	18100000	1242600000	1950	95	1838	3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833	7901;7902;7903;7904;7905;7906;7907;7908;7909;7910;7911;7912;7913;7914;7915;7916;7917;7918;7919;7920;7921;7922;7923;7924;7925;7926;7927;7928;7929;7930;7931	7927	115	31	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Unmodified	2226.2082	0.20822522	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3	0.894		2	1	2		23.162	23.162	2;3	4.2862E-46	15990	DP1061-9	247.11	223.4			NaN	NaN	NaN	0	0	Median	91966000	0	91966000	1951	95	1838	3834;3835;3836;3837;3838	7932;7933;7934;7935;7936;7937	7936		6	9606
MTDQEAIQDLWQWR	0	1	Oxidation (M)	1834.8308	0.83083277	95	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.17	0.898		1	1	5	5	23.4	23.4	2;3	9.9959E-127	14933	DP1061-9	275.48	210.2			52.213	55.824	NaN	1	0	Median	653550000	10097000	643450000	1952	95	1839	3839;3840;3841;3842;3843;3844;3845;3846;3847;3848;3849;3850	7938;7939;7940;7941;7942;7943;7944;7945;7946;7947;7948;7949;7950;7951;7952;7953;7954;7955;7956	7947	116	19	9606
MTDQEAIQDLWQWR	0	1	Unmodified	1818.8359	0.83591814	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		23.106	23.106	2	8.2643E-08	15933	DP1061-9	190.53	145.68			NaN	NaN	NaN	0	0	Median	33252000	0	33252000	1953	95	1839	3851	7957;7958	7958		2	9606
MTEWETAAPAVAETPDIK	1	0	Acetyl (Protein N-term);Oxidation (M)	2016.935	0.93502307	189	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	1	0	5	0					1	21.249	21.249	2	6.8664E-08	10065	DP1061-10	125.61	96.806			NaN	NaN	NaN	0	0	Median	5331800	0	5331800	1954	189	1840	3852	7959;7960	7960	244	2	9606
MTLDDFR	0	1	Unmodified	896.4062	0.40620276	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				17.796	17.796	2	0.0024742	7926	DP1061-6	118.69	77.766		+	NaN	NaN	NaN	0	0	Median	26108000	26108000	0	1955	19	1841	3853;3854	7961;7962;7963;7964	7961		4	9606
MTLDDFR	0	1	Oxidation (M)	912.40112	0.40111738	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	0		1				15.702	15.702	2	0.0029423	6585	DP1061-7	114.19	74.967		+	NaN	NaN	NaN	0	0	Median	42217000	42217000	0	1956	19	1841	3855	7965;7966	7966	12	2	9606
MTQNPNYYNLQGISHR	0	1	Oxidation (M)	1950.9006	0.90064367	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					16.122	16.122	3	7.2902E-05	5954	DP1061-6	105.39	74.846			NaN	NaN	NaN	0	0	Median	11557000	0	11557000	1957	66	1842	3856	7967;7968;7969	7969	62	3	9606
MTVPISITNPDLLR	0	1	Oxidation (M)	1584.8545	0.85452832	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	4					19.887	19.887	2	1.6134E-05	10205	DP1061-6	123.67	80.869			NaN	NaN	NaN	0	0	Median	8133900	4977300	3156600	1958	34	1843	3857;3858;3859;3860	7970;7971;7972;7973;7974;7975;7976;7977	7974	36	8	9606
MVAAVACAQVPK	1	0	Oxidation (M)	1259.6366	0.6366134	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.2	0.4			4	1		14.805	14.805	2	1.0804E-07	5261	DP1061-8	141.52	96.362			0.84539	0.90301	3.3051	3	0	Median	734140000	380000000	354140000	1959	501	1844	3861;3862;3863;3864;3865	7978;7979;7980;7981;7982;7983;7984;7985;7986;7987;7988;7989;7990;7991	7979	602	14	9606
MVAAVACAQVPK	1	0	Unmodified	1243.6417	0.64169877	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			15.991	15.991	2	0.00020082	6355	DP1061-8	124.23	90.058			NaN	NaN	NaN	0	0	Median	23139000	23139000	0	1960	501	1844	3866	7992;7993	7992		2	9606
MVDQLFCK	1	0	Oxidation (M)	1055.478	0.47798749	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	0	2	0		2				16.15	16.15	2	0.032897	7165	DP1061-7	76.774	33.905			NaN	NaN	NaN	0	0	Median	0	0	0	1961	269	1845	3867;3868	7994;7995	7994		2	9606
MVHIDEEMGPK	1	0	2 Oxidation (M)	1316.5741	0.57407272	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	2	0	2	0		1				12.683	12.683	2	0.0094592	2936	DP1061-7	79.906	60.635			NaN	NaN	NaN	0	0	Median	2112000	0	2112000	1962	489	1846	3869	7996	7996	587;588	1	9606
MVLCSQQWK	1	0	Oxidation (M)	1194.5525	0.55254942	129	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	1	0	2	0		1				15.446	15.446	2	0.053422	6245	DP1061-7	68.224	40.015			NaN	NaN	NaN	0	0	Median	0	0	0	1963	129	1847	3870	7997	7997		1	9606
MVNHFIAEFK	1	0	Oxidation (M)	1250.6118	0.61177885	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			16.44	16.44	2	0.012081	7129	DP1061-8	86.136	41.711			NaN	NaN	NaN	0	0	Median	11315000	0	11315000	1964	113	1848	3871	7998;7999	7998	137	2	9606
MVPAGMGAGLER	0	1	2 Oxidation (M)	1219.5689	0.56892776	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			13.517	13.517	2	0.019319	4014	DP1061-8	53.756	32.886			2.0677	2.1973	NaN	1	0	Median	81682000	29127000	52555000	1965	209	1849	3872	8000;8001;8002;8003	8001	267;268	4	9606
MVPAGMGAGLER	0	1	Oxidation (M)	1203.574	0.57401314	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			14.342	14.342	2	0.018537	5118	DP1061-8	66.299	23.43			2.2265	2.4184	NaN	1	0	Median	21160000	5143700	16017000	1966	209	1849	3873	8004;8005	8005	267;268	2	9606
MVQEAEKYKAEDEVQR	2	1	Oxidation (M)	1967.9259	0.92585536	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	2	3.25	0.433			3	1		12.871	12.871	2;3	1.3354E-14	3390	DP1061-8	153.24	153.24			11.413	11.721	NaN	1	0	Median	79422000	6947000	72475000	1967	108	1850	3874;3875;3876;3877	8006;8007;8008;8009;8010;8011;8012;8013;8014	8009	132	9	9606
MVQEAEKYKAEDEVQR	2	1	Unmodified	1951.9309	0.93094074	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			13.505	13.505	3	5.4459E-05	4088	DP1061-8	115.8	79.333			NaN	NaN	NaN	0	0	Median	14545000	0	14545000	1968	108	1850	3878	8015;8016	8016		2	9606
MVQQLQEDVDMEDAP	0	0	2 Oxidation (M)	1778.7339	0.73388042	528	Q9UHA3	RSL24D1	Probable ribosome biogenesis protein RLP24	yes	yes	0	2	0	5	0					1	17.736	17.736	2	0.01132	7278	DP1061-10	75.78	54.94			NaN	NaN	NaN	0	0	Median	0	0	0	1969	528	1851	3879	8017;8018	8018	634;635	2	9606
MVWVDLEMTGLDIEK	1	0	2 Oxidation (M)	1809.8529	0.85287334	552	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	2	0	2	0		1				20.081	20.081	2	0.013493	11954	DP1061-7	74.841	26.997			NaN	NaN	NaN	0	0	Median	17581000	0	17581000	1970	552	1852	3880	8019	8019	647;648	1	9606
NAADPISGDFKEISSVK	2	0	Unmodified	1776.8894	0.8893935	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				17.812	17.812	3	1.3064E-05	9356	DP1061-7	118.55	50.27			NaN	NaN	NaN	0	0	Median	19001000	0	19001000	1971	182	1853	3881	8020;8021	8020		2	9606
NAAPPPSNTEAPPGETR	0	1	Unmodified	1704.8067	0.80672651	484	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				13.141	13.141	2	6.8943E-11	3388	DP1061-7	182.37	156.67			NaN	NaN	NaN	0	0	Median	4646300	0	4646300	1972	484	1854	3882	8022;8023;8024	8024		3	9606
NAEPDEQDFEK	1	0	Unmodified	1320.547	0.54698957	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2.5	0.5		1	1			14.454	14.454	2	0.001504	4971	DP1061-7	144.65	111.46			NaN	NaN	NaN	0	0	Median	30840000	0	30840000	1973	334	1855	3883;3884	8025;8026;8027;8028	8025		4	9606
NAHSATTWSGQYVGGAEAR	0	1	Unmodified	1961.898	0.89800113	24	CON__Streptavidin			yes	yes	0	0	0	4	1.38	2	2	3	2	13	22.598	22.598	2;3	2.0638E-204	15828	DP1061-10	370.34	323.49		+	NaN	NaN	NaN	0	0	Median	1950799999.9999998	1950799999.9999998	0	1974	24	1856	3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906	8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040;8041;8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052;8053;8054;8055;8056;8057;8058;8059;8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072;8073;8074;8075;8076;8077;8078;8079;8080;8081	8046		53	
NALANPLYCPDYR	0	1	Unmodified	1565.7297	0.72966216	138	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				2		18.397	18.397	2	0.0025534	10049	DP1061-9	98.898	73.602			NaN	NaN	NaN	0	0	Median	8287300	0	8287300	1975	138	1857	3907;3908	8082;8083;8084	8083		3	9606
NALESYAFNMK	1	0	Oxidation (M)	1302.5914	0.59143734	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			2			22.224	22.224	2	0.014605	9468	DP1061-8	81.95	48.206			NaN	NaN	NaN	0	0	Median	28897000	0	28897000	1976	108	1858	3909;3910	8085;8086;8087	8086	133	3	9606
NALQHCYWK	1	0	Unmodified	1218.5604	0.56041199	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				14.912	14.912	2	0.02219	5619	DP1061-7	82.241	54.912			NaN	NaN	NaN	0	0	Median	9379900	0	9379900	1977	512	1859	3911	8088;8089	8088		2	9606
NAPNDASYDAVR	0	1	Unmodified	1291.5793	0.57929275	437	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					13.947	13.947	2	0.011401	3683	DP1061-6	86.189	49.518			NaN	NaN	NaN	0	0	Median	2901000	0	2901000	1978	437	1860	3912	8090;8091	8090		2	9606
NASEDNHSENTLYSNDNGSNLQR	0	1	Unmodified	2578.0916	0.091628152	419	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	4	0				1		14.419	14.419	3	1.0487999999999999E-19	5024	DP1061-9	168.46	142.42			NaN	NaN	NaN	0	0	Median	8313600	0	8313600	1979	419	1861	3913	8092;8093;8094	8093		3	9606
NAVITVPAYFNDSQR	0	1	Unmodified	1693.8424	0.84238373	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.374	19.374	2	5.6062E-62	10542	DP1061-8	221.09	221.09			1.7126	1.833	NaN	1	0	Median	52582000	24100000	28482000	1980	166	1862	3914	8095;8096;8097;8098	8096		4	9606
NAVPITPTLNR	0	1	Unmodified	1194.6721	0.67207093	9	CON__P02663			yes	yes	0	0	0	4	0				1		16.187	16.187	2	0.033532	7210	DP1061-9	74.92	41.369		+	NaN	NaN	NaN	0	0	Median	9748000	9748000	0	1981	9	1863	3915	8099	8099		1	
NAVWALSNLCR	0	1	Unmodified	1302.6503	0.65028963	211;56	P52294;O15131;O60684	KPNA1;KPNA5;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-6;Importin subunit alpha-7	no	no	0	0	0	3	0			1			19.734	19.734	2	0.0025362	10988	DP1061-8	111.46	43.558			NaN	NaN	NaN	0	0	Median	8988200	0	8988200	1982	211;56	1864	3916	8100;8101	8101		2	9606
NCIVLIDSTPYR	0	1	Unmodified	1449.7286	0.72859953	235	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	22.825	22.825	2	0.0042092	11453	DP1061-10	94.363	60.157			NaN	NaN	NaN	0	0	Median	5522000	0	5522000	1983	235	1865	3917	8102;8103;8104	8104		3	9606
NCLTNFHGMDLTR	0	1	Oxidation (M)	1593.7028	0.70279548	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		15.745	15.745	3	0.004146	6609	DP1061-9	77.124	58.301			NaN	NaN	NaN	0	0	Median	58162000	0	58162000	1984	226	1866	3918	8105;8106	8106	289	2	9606
NCLTNFHGMDLTR	0	1	Unmodified	1577.7079	0.70788086	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.501	17.501	3	0.0064146	8963	DP1061-9	80.469	48.587			NaN	NaN	NaN	0	0	Median	8938400	0	8938400	1985	226	1866	3919	8107;8108	8107		2	9606
NDEELNKLLGK	2	0	Unmodified	1271.6721	0.67213051	106	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	yes	no	0	0	1	5	0					1	24.472	24.472	2	2.5994E-16	12826	DP1061-10	159.34	108.14			8.3441	8.844	NaN	1	0	Median	33017000	5510100	27506000	1986	106	1867	3920	8109;8110	8110		2	9606
NDLAVVDVR	0	1	Unmodified	999.53491	0.53490874	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0.632		1	3	1		16.473	16.473	2	0.0026865	7326	DP1061-7	102.62	32.81			22.009	22.605	NaN	1	0	Median	525620000	17040000	508580000	1987	134	1868	3921;3922;3923;3924;3925	8111;8112;8113;8114;8115;8116;8117;8118;8119;8120;8121	8112		11	9606
NDLSPASSGNAVYDFFIGR	0	1	Unmodified	2028.9541	0.95411902	342	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	2.5	1.12	1	1	1	1		23.346	23.346	2	7.582E-16	15160	DP1061-8	183.96	160.84			NaN	NaN	NaN	0	0	Median	18096000	0	18096000	1988	342	1869	3926;3927;3928;3929	8122;8123;8124;8125;8126;8127;8128	8126		7	9606
NDTKEDVFVHQTAIK	2	0	Unmodified	1743.8792	0.87916317	262;126	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	1	4	0				3		14.479	14.479	2;3;4	7.3484E-07	5184	DP1061-9	178.68	143.16			NaN	NaN	NaN	0	0	Median	147640000	0	147640000	1989	126;262	1870	3930;3931;3932	8129;8130;8131;8132;8133;8134;8135	8134		7	9606
NDTKEDVFVHQTAIKK	3	0	Unmodified	1871.9741	0.97412619	262;126	P16989;P67809	YBX3;YBX1	Y-box-binding protein 3;Nuclease-sensitive element-binding protein 1	no	no	0	0	2	4	0				2		13.364	13.364	3;4	4.2041E-05	3686	DP1061-9	117.13	88.192			NaN	NaN	NaN	0	0	Median	73612000	0	73612000	1990	126;262	1871	3933;3934	8136;8137;8138	8136		3	9606
NEDEMMVAIFEYIDR	0	1	2 Oxidation (M)	1905.8125	0.81246509	487	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	2	0	2	0		1				21.625	21.625	2	0.00074075	13859	DP1061-7	97.957	77.169			NaN	NaN	NaN	0	0	Median	3390700	0	3390700	1991	487	1872	3935	8139;8140;8141	8139	585;586	3	9606
NEEPSEEEIDAPKPK	2	0	Unmodified	1710.7948	0.79482442	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		2				13.741	13.741	2;3	5.8315E-08	4141	DP1061-7	193.49	147.89			NaN	NaN	NaN	0	0	Median	63306000	0	63306000	1992	508	1873	3936;3937	8142;8143;8144;8145;8146;8147	8144		6	9606
NEGNIFPNPEATFVK	1	0	Unmodified	1675.8206	0.82058566	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	2					20.063	20.063	2	0.0090993	10704	DP1061-6	84.188	49.434			NaN	NaN	NaN	0	0	Median	11876000	0	11876000	1993	559	1874	3938;3939	8148;8149;8150	8149		3	9606
NELESYAYSLK	1	0	Unmodified	1315.6296	0.62959699	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			18.452	18.452	2	0.01096	9328	DP1061-8	88.134	23.48			NaN	NaN	NaN	0	0	Median	15504000	0	15504000	1994	112	1875	3940	8151;8152	8152		2	9606
NEYSLTGLCNR	0	1	Unmodified	1325.6034	0.60339901	477	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		17.007	17.007	2	0.00015742	8334	DP1061-9	132.01	83.216			NaN	NaN	NaN	0	0	Median	7747400	0	7747400	1995	477	1876	3941	8153;8154	8154		2	9606
NFDLTAIPCANHK	1	0	Unmodified	1499.7191	0.71909747	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	6	3				18.056	18.056	2;3	6.1743E-10	8842	DP1061-7	198.61	148.14			0.80288	0.89746	27.653	4	0	Median	389460000	217930000	171520000	1996	309	1877	3942;3943;3944;3945;3946;3947;3948;3949;3950	8155;8156;8157;8158;8159;8160;8161;8162;8163;8164;8165;8166;8167;8168;8169;8170;8171;8172;8173	8171		19	9606
NFGASLLLPGLK	1	0	Unmodified	1228.718	0.71795849	435	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	4	0				1		21.391	21.391	2	0.0034043	14011	DP1061-9	99.688	72.558			NaN	NaN	NaN	0	0	Median	3105800	0	3105800	1997	435	1878	3951	8174;8175	8175		2	9606
NFGIGQDIQPK	1	0	Unmodified	1215.6248	0.62478638	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		16.946	16.946	2	0.0025362	8181	DP1061-9	111.46	83.631			NaN	NaN	NaN	0	0	Median	36772000	0	36772000	1998	242	1879	3952	8176;8177	8177		2	9606
NFILDQTNVSAAAQR	0	1	Unmodified	1646.8376	0.8376327	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2.25	0.661		7		1		21.967	21.967	2	2.2351E-06	10208	DP1061-7	178.67	125.54			NaN	NaN	NaN	0	0	Median	17429000	0	17429000	1999	281	1880	3953;3954;3955;3956;3957;3958;3959;3960	8178;8179;8180;8181;8182;8183;8184;8185;8186;8187	8179		10	9606
NFYFLEMNTR	0	1	Oxidation (M)	1349.6074	0.60742176	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		19.531	19.531	2	0.01088	10636	DP1061-8	76.1	52.331			0.98358	1.0477	5.1234	2	0	Median	101430000	52585000	48843000	2000	86	1881	3961;3962	8188;8189;8190;8191	8189	97	4	9606
NFYFLEMNTR	0	1	Unmodified	1333.6125	0.61250714	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.964	20.964	2	1.2011E-05	12537	DP1061-8	128.28	90.681			0.67395	0.72661	NaN	1	0	Median	33494000	19252000	14242000	2001	86	1881	3963	8192;8193;8194	8194		3	9606
NFYVEVPELAK	1	0	Unmodified	1307.6762	0.67615325	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				19.955	19.955	2	0.022804	11663	DP1061-7	78.098	43.711			NaN	NaN	NaN	0	0	Median	8736900	0	8736900	2002	396	1882	3964	8195;8196	8196		2	9606
NGIAFMGPPSQAMWALGDK	1	0	2 Oxidation (M)	2021.9339	0.93391763	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2.25	0.829	1	1	2			19.943	19.943	2	3.8983E-24	10247	DP1061-6	162.37	162.37			0.81441	0.88135	11.83	2	0	Median	64796000	35600000	29196000	2003	309	1883	3965;3966;3967;3968	8197;8198;8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214	8200	402;403	18	9606
NGIAFMGPPSQAMWALGDK	1	0	Oxidation (M)	2005.939	0.93900301	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.17	0.373	5	1				21.518	21.518	2	6.5652E-12	13271	DP1061-7	128.9	106.35			0.90724	0.98181	16.649	2	0	Median	22482000	9309900	13172000	2004	309	1883	3969;3970;3971;3972;3973;3974	8215;8216;8217;8218;8219;8220;8221;8222;8223;8224;8225;8226;8227	8226	402;403	13	9606
NGIAFMGPPSQAMWALGDK	1	0	Unmodified	1989.9441	0.94408839	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.47	23.47	2	0.020117	13819	DP1061-6	81.185	15.79			NaN	NaN	NaN	0	0	Median	0	0	0	2005	309	1883	3975	8228	8228		1	9606
NGPLEVAGAAVSAGHGLPAK	1	0	Unmodified	1814.9639	0.96389585	63	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		17.294	17.294	3	0.025732	8684	DP1061-9	65.374	32.227			NaN	NaN	NaN	0	0	Median	7293000	0	7293000	2006	63	1884	3976	8229	8229		1	9606
NGQDLGVAFK	1	0	Unmodified	1047.5349	0.53490874	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				16.218	16.218	2	0.0047563	7221	DP1061-7	107.69	68.441			NaN	NaN	NaN	0	0	Median	22781000	0	22781000	2007	281	1885	3977	8230;8231	8231		2	9606
NGQPESEDKYGTTPPQLDADSSYFLYSK	2	0	Unmodified	3136.4149	0.41491935	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	2.5	0.5		1	1			19.279	19.279	3	6.2247E-05	10370	DP1061-8	97.188	80.522		+	NaN	NaN	NaN	0	0	Median	54840000	54840000	0	2008	5	1886	3978;3979	8232;8233;8234;8235;8236;8237;8238;8239	8237		8	
NGSFGVLVATNVAAR	0	1	Unmodified	1474.7892	0.78922595	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				18.652	18.652	2	0.0016186	10154	DP1061-7	97.957	72.257			NaN	NaN	NaN	0	0	Median	16704000	0	16704000	2009	508	1887	3980	8240	8240		1	9606
NGYGFINR	0	1	Unmodified	939.45626	0.45626449	262;126	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	0	4	0				1		16.071	16.071	2	0.016223	7102	DP1061-9	97.473	55.077			NaN	NaN	NaN	0	0	Median	52300000	0	52300000	2010	126;262	1888	3981	8241;8242	8242		2	9606
NHDHQEIAVPVANLK	1	0	Unmodified	1683.8693	0.86926718	65	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	5	0					1	25.446	25.446	3	0.00081496	14232	DP1061-10	95.755	70.024			NaN	NaN	NaN	0	0	Median	18454000	0	18454000	2011	65	1889	3982	8243;8244	8244		2	9606
NHEEEMKDLR	1	1	Unmodified	1299.5877	0.58774895	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2	0.816	1	1	1			12.503	12.503	3	0.00011688	2824	DP1061-8	120.86	88.637		+	NaN	NaN	NaN	0	0	Median	62270000	62270000	0	2012	17	1890	3983;3984;3985	8245;8246;8247;8248	8248		4	9606
NHPGLLLMDTTFR	0	1	Oxidation (M)	1529.766	0.76604767	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.2	0.4		4	1			18.54	18.54	2;3	2.2371E-05	8988	DP1061-7	120.59	120.59			0.88064	0.87821	4.5745	4	0	Linear	1252600000	667230000	585380000	2013	116	1891	3986;3987;3988;3989;3990	8249;8250;8251;8252;8253;8254;8255;8256;8257;8258;8259	8251	160	10	9606
NHPGLLLMDTTFR	0	1	Unmodified	1513.7711	0.77113304	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			19.152	19.152	2;3	1.0959E-11	10623	DP1061-7	144.28	144.28			0.87255	0.92456	12.804	3	0	Median	202060000	108400000	93658000	2014	116	1891	3991;3992;3993	8260;8261;8262;8263;8264;8265;8266;8267;8268;8269;8270	8263		11	9606
NIAFFSTNCVEGTAR	0	1	Unmodified	1685.7832	0.78315429	84	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				19.12	19.12	2	0.0026449	10726	DP1061-7	106.49	56.139			NaN	NaN	NaN	0	0	Median	0	0	0	2015	84	1892	3994	8271	8271		1	9606
NIALDKTDDSNPR	1	1	Unmodified	1457.711	0.71103521	517	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	1	3	0			1			13.142	13.142	2	0.00034173	3600	DP1061-8	155.48	104.23			NaN	NaN	NaN	0	0	Median	5875500	0	5875500	2016	517	1893	3995	8272;8273	8273		2	9606
NIAQIAVVMGSCTAGGAYVPAMADENIIVR	0	1	2 Oxidation (M)	3122.5199	0.51987566	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	2	0	3.5	0.5			1	1		20.611	20.611	3	3.5857000000000005E-30	12130	DP1061-8	138.36	119.8			0.97773	1.0503	NaN	1	0	Median	47982000	19934000	28048000	2017	501	1894	3996;3997	8274;8275;8276;8277;8278	8275	603;604	5	9606
NIAQIAVVMGSCTAGGAYVPAMADENIIVRK	1	1	2 Oxidation (M)	3250.6148	0.61483868	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	2	1	3	0			1			19.152	19.152	3	0.052266	10233	DP1061-8	43.34	17.82			NaN	NaN	NaN	0	0	Median	0	0	0	2018	501	1895	3998	8279	8279	603;604	1	9606
NIEGVDKLTR	1	1	Unmodified	1143.6248	0.62478638	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	1	4	0				1		14.346	14.346	2	0.03762	4926	DP1061-9	104.05	67.666			NaN	NaN	NaN	0	0	Median	11560000	0	11560000	2019	360	1896	3999	8280;8281	8281		2	9606
NIEMTQEDVR	0	1	Oxidation (M)	1249.5609	0.5608655	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					13.184	13.184	2	0.0024333	2863	DP1061-6	113.22	77.774			NaN	NaN	NaN	0	0	Median	9867300	0	9867300	2020	66	1897	4000	8282;8283	8283	63	2	9606
NIEMTQEDVR	0	1	Unmodified	1233.566	0.56595087	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					14.894	14.894	2	0.0056357	4695	DP1061-6	104.2	61.913			NaN	NaN	NaN	0	0	Median	3787700	0	3787700	2021	66	1897	4001	8284	8284		1	9606
NIGVDNPAAK	1	0	Unmodified	997.51926	0.51925868	270	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			13.502	13.502	2	0.031095	4087	DP1061-8	76.1	33.991			NaN	NaN	NaN	0	0	Median	10328000	0	10328000	2022	270	1898	4002	8285	8285		1	9606
NIHPIYNIK	1	0	Unmodified	1110.6186	0.61857879	322	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		14.855	14.855	2	0.010225	5775	DP1061-9	99.375	37.696			NaN	NaN	NaN	0	0	Median	7724800	0	7724800	2023	322	1899	4003	8286	8286		1	9606
NIIQQAIDAGEVPSYNAFVK	1	0	Unmodified	2176.1164	0.11643333	432	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	4	0				1		22.25	22.25	2	6.4671E-12	14981	DP1061-9	153.09	116.8			NaN	NaN	NaN	0	0	Median	3094900	0	3094900	2024	432	1900	4004	8287;8288;8289	8287		3	9606
NIIVGFAR	0	1	Unmodified	888.51814	0.51813647	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.685	17.685	2	0.00039708	8364	DP1061-8	122.79	47.479			1.0372	1.0984	9.3126	2	0	Median	228920000	110630000	118280000	2025	87	1901	4005;4006	8290;8291;8292;8293;8294;8295;8296;8297	8291		8	9606
NILLTNEQLESAR	0	1	Unmodified	1499.7944	0.79437091	500	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				2		17.86	17.86	2	0.00010478	9459	DP1061-9	157.68	101.24			NaN	NaN	NaN	0	0	Median	10383000	0	10383000	2026	500	1902	4007;4008	8298;8299;8300	8298		3	9606
NINTFVETPVQK	1	0	Unmodified	1388.73	0.72997974	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.94	16.94	2	0.0024538	8269	DP1061-7	105.98	61.657			NaN	NaN	NaN	0	0	Median	11444000	0	11444000	2027	182	1903	4009	8301;8302	8302		2	9606
NIPGITLLNVSK	1	0	Unmodified	1267.75	0.7499869	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		20.012	20.012	2	6.0713E-05	12097	DP1061-9	125.74	65.81			21.622	22.602	NaN	1	0	Median	221460000	9652200	211810000	2028	162	1904	4010	8303;8304;8305;8306	8303		4	9606
NIPLLFLQNITGFMVGR	0	1	Oxidation (M)	1948.0604	0.060438772	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			25.178	25.178	2	1.1419000000000001E-30	17607	DP1061-8	174.9	174.9			0.87269	0.94375	NaN	1	0	Median	7197300	3999900	3197300	2029	501	1905	4011	8307;8308;8309;8310	8310	605	4	9606
NIQGTITGDILPR	0	1	Unmodified	1396.7674	0.76742787	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					19.038	19.038	2	4.0166E-05	9318	DP1061-6	131.82	89.943			NaN	NaN	NaN	0	0	Median	5494100	0	5494100	2030	68	1906	4012	8311;8312	8312		2	9606
NISHDTFGTTYGR	0	1	Unmodified	1467.6743	0.67425577	498	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				2		14.848	14.848	2;3	2.9571E-05	5576	DP1061-9	124.47	93.74			NaN	NaN	NaN	0	0	Median	25478000	0	25478000	2031	498	1907	4013;4014	8313;8314;8315;8316	8313		4	9606
NISMSVEGDYTYLR	0	1	Oxidation (M)	1662.7559	0.75593649	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	1	0	1					18.309	18.309	2	6.9589E-05	8454	DP1061-6	161.93	123.36			NaN	NaN	NaN	0	0	Median	8975000	0	8975000	2032	559	1908	4015	8317;8318	8318	655	2	9606
NIVEAAAVR	0	1	Unmodified	941.52943	0.52942943	252	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	5	0					2	17.128	17.128	2	0.031479	6813	DP1061-10	93.162	39.608			NaN	NaN	NaN	0	0	Median	0	0	0	2033	252	1909	4016;4017	8319;8320	8319		2	9606
NIVQHTTDSSLEEK	1	0	Unmodified	1599.774	0.77402939	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	4	0				1		13.489	13.489	2	0.00015364	3951	DP1061-9	153.95	111.23			NaN	NaN	NaN	0	0	Median	3383700	0	3383700	2034	491	1910	4018	8321	8321		1	9606
NIYAFMGTPVQK	1	0	Oxidation (M)	1383.6857	0.68567208	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				17.145	17.145	2	0.00016648	8529	DP1061-7	123.63	93.294			NaN	NaN	NaN	0	0	Median	27114000	0	27114000	2035	182	1911	4019	8322;8323	8322	229	2	9606
NKFPGDSVVTGR	1	1	Unmodified	1275.6571	0.65714914	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		14.48	14.48	2;3	1.8189E-11	5211	DP1061-8	137.95	104.19			0.90438	0.94178	8.9391	3	0	Median	305720000	165140000	140590000	2036	87	1912	4020;4021;4022	8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335	8328		12	9606
NKKENEDENSSSTNLCVEDLQK	3	0	Unmodified	2580.161	0.16095327	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	2	2	0		1				14.376	14.376	4	0.031533	4996	DP1061-7	53.454	14.862			NaN	NaN	NaN	0	0	Median	12121000	0	12121000	2037	512	1913	4023	8336	8336		1	9606
NKLNDLEDALQQAK	2	0	Unmodified	1598.8264	0.82639932	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3.5	0.5			1	1		18.45	18.45	2	0.00030178	10193	DP1061-9	139.32	84.784		+	NaN	NaN	NaN	0	0	Median	6124000	6124000	0	2038	80	1914	4024;4025	8337;8338;8339	8339		3	9606
NKPQVPVPGSDISETQVER	1	1	Unmodified	2079.0596	0.059646729	445	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	1	4	0				1		15.792	15.792	3	3.8082E-05	6720	DP1061-9	115.57	71.318			NaN	NaN	NaN	0	0	Median	12573000	0	12573000	2039	445	1915	4026	8340;8341	8341		2	9606
NKYEDEINKR	2	1	Unmodified	1307.647	0.64697839	80;18;14	P04264;CON__P04264;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__Q8VED5;P05787;CON__P05787	KRT1;KRT5;KRT8	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 8	no	no	0	0	2	1.75	0.829	2	1	1			12.612	12.612	2;3	0.00056123	2217	DP1061-6	163.88	121.53		+	NaN	NaN	NaN	0	0	Median	285870000	285870000	0	2040	80;18;14	1916	4027;4028;4029;4030	8342;8343;8344;8345;8346	8343		5	9606
NLATTVTEEILEK	1	0	Unmodified	1459.777	0.77698951	49	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	3	0			1			21.396	21.396	2	0.0030744	13116	DP1061-8	95.618	53.27			NaN	NaN	NaN	0	0	Median	9472100	0	9472100	2041	49	1917	4031	8347	8347		1	9606
NLDIERPTYTNLNR	0	2	Unmodified	1717.8747	0.87474649	264;394;465	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	1	3.5	0.5			2	2		16.648	16.648	2;3	2.055E-12	7568	DP1061-9	147.58	111.16			3.3375	3.2972	3.0395	2	0	Median	368550000	59677000	308870000	2042	264;394;465	1918	4032;4033;4034;4035	8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358	8353		11	9606
NLDLDSIIAEVK	1	0	Unmodified	1328.7187	0.71874635	20;18	CON__P35908v2;P35908;CON__P35908;Q5XKE5;CON__Q5XKE5;CON__P13647;P13647;CON__O95678;O95678;CON__Q8VED5	KRT2;KRT79;KRT5;KRT75	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75	no	no	0	0	0	3	0.816		1	1	1		22.417	22.417	2	0.0001041	14299	DP1061-8	136.96	91.978		+	NaN	NaN	NaN	0	0	Median	61883000	61883000	0	2043	20;18	1919	4036;4037;4038	8359;8360;8361;8362;8363;8364;8365	8361		7	9606
NLEAVETLGSTSTICSDK	1	0	Unmodified	1923.9095	0.9095366	84	P05023;P13637;P50993;Q13733	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	yes	no	0	0	0	1	0	1					18.13	18.13	2	0.037073	8360	DP1061-6	73.834	30.858			NaN	NaN	NaN	0	0	Median	2623100	0	2623100	2044	84	1920	4039	8366	8366		1	9606
NLGFGMGIEFR	0	1	Oxidation (M)	1255.6019	0.60194245	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	2	0		1				19.639	19.639	2	0.016228	11370	DP1061-7	80.231	42.756			NaN	NaN	NaN	0	0	Median	3627600	0	3627600	2045	559	1921	4040	8367;8368	8367	656	2	9606
NLLSAYGEVGR	0	1	Unmodified	1177.6091	0.60913632	537	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		18.212	18.212	2	0.0086297	9970	DP1061-9	90.108	35.559			NaN	NaN	NaN	0	0	Median	11610000	0	11610000	2046	537	1922	4041	8369	8369		1	9606
NLLTVTSSDEMMK	1	0	2 Oxidation (M)	1499.6847	0.68474538	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	1	0	1					16.012	16.012	2	0.0052286	5789	DP1061-6	84.31	39.174			NaN	NaN	NaN	0	0	Median	7307900	0	7307900	2047	271	1923	4042	8370;8371	8371	343;344	2	9606
NLLTVTSSDEMMK	1	0	Oxidation (M)	1483.6898	0.68983076	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					17.234	17.234	2	0.031997	7343	DP1061-6	69.672	24.304			NaN	NaN	NaN	0	0	Median	0	0	0	2048	271	1923	4043	8372	8372	343;344	1	9606
NLLVTMLIDQLCGR	0	1	Oxidation (M)	1660.864	0.86404715	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				24.432	24.432	2	0.00057672	15106	DP1061-6	98.353	84.545			1.0366	1.1964	NaN	1	0	Median	8526000	4529300	3996700	2049	309	1924	4044;4045	8373;8374;8375;8376;8377	8375	404	5	9606
NLMPSAGK	1	0	Unmodified	816.41637	0.41637351	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				13.474	13.474	2	0.025231	3874	DP1061-7	84.568	32.165			NaN	NaN	NaN	0	0	Median	6341000	0	6341000	2050	182	1925	4046	8378;8379	8379		2	9606
NLPFDFTWK	1	0	Unmodified	1166.576	0.57604528	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			22.134	22.134	2	0.0011504	13912	DP1061-8	112.41	94.943			2.2086	2.3591	NaN	1	0	Median	28420000	7854600	20566000	2051	209	1926	4047	8380;8381;8382;8383	8381		4	9606
NLPLPPPPPPR	0	1	Unmodified	1193.6921	0.69207809	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			17.355	17.355	2	0.0091138	8081	DP1061-8	89.698	42.095			NaN	NaN	NaN	0	0	Median	7177000	0	7177000	2052	232	1927	4048	8384	8384		1	9606
NLQCLVIDEADR	0	1	Unmodified	1444.698	0.69802768	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			18.688	18.688	2	0.0042092	9528	DP1061-8	94.363	55.11			NaN	NaN	NaN	0	0	Median	15831000	0	15831000	2053	515	1928	4049	8385;8386	8385		2	9606
NLQDAMQVCR	0	1	Oxidation (M)	1249.5543	0.55434033	195	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			13.498	13.498	2	0.026406	4094	DP1061-8	81.548	53.724			NaN	NaN	NaN	0	0	Median	0	0	0	2054	195	1929	4050	8387	8387	248	1	9606
NLQEGNEVDSQSSIR	0	1	Unmodified	1674.7809	0.78090569	62	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	2	0		2				14.551	14.551	2	2.2131E-05	5223	DP1061-7	167.11	92.65			NaN	NaN	NaN	0	0	Median	5203600	0	5203600	2055	62	1930	4051;4052	8388;8389	8388		2	9606
NLQEQVMAVTAQVK	1	0	Oxidation (M)	1573.8134	0.81339179	420	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	1	0	4	0				1		18.562	18.562	2	8.227E-05	10315	DP1061-9	144.17	101.45			NaN	NaN	NaN	0	0	Median	7619700	0	7619700	2056	420	1931	4053	8390;8391	8391	521	2	9606
NLQTVNVDEN	0	0	Unmodified	1144.536	0.53603095	255	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	15.969	15.969	2	0.0019305	5863	DP1061-10	159.28	106.19			NaN	NaN	NaN	0	0	Median	0	0	0	2057	255	1932	4054	8392;8393	8393		2	9606
NLTVILSDASAPGEGEHK	1	0	Unmodified	1836.9218	0.92175626	487	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	2	0		1				17.381	17.381	3	0.0061522	8830	DP1061-7	81.01	53.276			NaN	NaN	NaN	0	0	Median	13482000	0	13482000	2058	487	1933	4055	8394	8394		1	9606
NLTWTLSNLCR	0	1	Unmodified	1376.6871	0.68706906	210	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			20.345	20.345	2	0.022562	11749	DP1061-8	91.087	0			NaN	NaN	NaN	0	0	Median	0	0	0	2059	210	1934	4056	8395	8395		1	9606
NLVPGESVYGEK	1	0	Unmodified	1290.6456	0.6455814	136	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		16.277	16.277	2	0.0039358	7297	DP1061-9	96.171	37.738			NaN	NaN	NaN	0	0	Median	19124000	0	19124000	2060	136	1935	4057	8396	8396		1	9606
NLVPGESVYGEKR	1	1	Unmodified	1446.7467	0.74669243	136	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		14.981	14.981	3	0.00042182	5752	DP1061-9	101.39	57.985			NaN	NaN	NaN	0	0	Median	15782000	0	15782000	2061	136	1936	4058	8397;8398	8398		2	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	0	1	Oxidation (M)	2204.893	0.89299211	137	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4	0				1		15.511	15.511	2	3.2281E-28	6293	DP1061-9	202.79	168.36			NaN	NaN	NaN	0	0	Median	11385000	0	11385000	2062	137	1937	4059	8399;8400;8401;8402	8400	183	4	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	0	1	Unmodified	2188.8981	0.89807748	137	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.329	16.329	2	4.8669E-13	7465	DP1061-9	148.44	126.53			NaN	NaN	NaN	0	0	Median	3527700	0	3527700	2063	137	1937	4060	8403;8404;8405	8404		3	9606
NMMAACDPR	0	1	Oxidation (M)	1080.4151	0.41506966	265;98;328;81;320;368;471	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;Q13509;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	1	0	3.5	0.5			1	1		12.501	12.501	2	0.01106	2713	DP1061-9	81.548	54.855			3.818	4.077	23.652	2	0	Median	107520000	21191000	86329000	2064	98;265;328;320;368;81;471	1938	4061;4062	8406;8407;8408;8409	8409	87;88	4	9606
NMQDMVEDYR	0	1	2 Oxidation (M)	1331.5122	0.51220074	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	3	1.41	1	1	1	1	1	14.038	14.038	2	0.0020717	3588	DP1061-6	108.43	87.913		+	NaN	NaN	NaN	0	0	Median	79075000	79075000	0	2065	80	1939	4063;4064;4065;4066;4067	8410;8411;8412;8413;8414;8415;8416;8417;8418	8412	78;79	9	9606
NMQDMVEDYR	0	1	Oxidation (M)	1315.5173	0.51728612	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	1.5	0.5	1	1				15.595	15.595	2	0.012314	5030	DP1061-6	85.862	36.147		+	NaN	NaN	NaN	0	0	Median	18827000	18827000	0	2066	80	1939	4068;4069	8419;8420;8421	8419	78;79	3	9606
NMSGSLYEMVSR	0	1	2 Oxidation (M)	1404.6014	0.6013501	297	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	2	0	4	0				1		15.362	15.362	2	0.032083	6256	DP1061-9	64.73	39.892			NaN	NaN	NaN	0	0	Median	4670900	0	4670900	2067	297	1940	4070	8422;8423	8422		2	9606
NMSVHLSPCFR	0	1	Oxidation (M)	1362.6173	0.61727494	240	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	5	0					2	24.026	24.026	2;3	0.0076157	12671	DP1061-10	73.632	56.969			NaN	NaN	NaN	0	0	Median	32658000	0	32658000	2068	240	1941	4071;4072	8424;8425;8426	8424	299	3	9606
NMTAEFK	1	0	Unmodified	839.38474	0.38473903	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.67	0.943		2		1		14.14	14.14	1;2	4.5051E-10	4716	DP1061-7	201.49	3.8879			NaN	NaN	NaN	0	0	Median	127250000	0	127250000	2069	339	1942	4073;4074;4075	8427;8428;8429	8428		3	9606
NMVPQQALVIR	0	1	Oxidation (M)	1283.702	0.70199085	84	P05023;P13637;P50993;Q13733	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	yes	no	0	1	0	2	0		1				16.393	16.393	2	0.034487	7500	DP1061-7	72.23	46.291			NaN	NaN	NaN	0	0	Median	6272100	0	6272100	2070	84	1943	4076	8430	8430		1	9606
NNASTDYDLSDK	1	0	Unmodified	1341.5685	0.56845329	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2.5	1.5	1			1		14.318	14.318	2	0.00011277	4009	DP1061-6	179.1	160.88			26.661	27.87	NaN	1	0	Median	140190000	5551000	134640000	2071	169	1944	4077;4078	8431;8432;8433;8434;8435;8436	8432		6	9606
NNNQQLAQLQK	1	0	Unmodified	1297.6739	0.67386184	543	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		2				13.933	13.933	2	0.0039902	4406	DP1061-7	114.28	61.565			NaN	NaN	NaN	0	0	Median	0	0	0	2072	543	1945	4079;4080	8437;8438	8437		2	9606
NNRQPYAVSELAGHQTSAESWGTGR	0	2	Unmodified	2715.275	0.27495267	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		16.518	16.518	3;4	6.0768E-13	7709	DP1061-9	142.14	117.46			NaN	NaN	NaN	0	0	Median	20106000	0	20106000	2073	162	1946	4081;4082	8439;8440;8441;8442;8443;8444	8441		6	9606
NNVAIAVTYNHDGSYSMQIEDK	1	0	Oxidation (M)	2484.1227	0.12271727	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		16.742	16.742	2;3	3.334E-08	7924	DP1061-8	122.33	84.149			0.89832	0.95955	NaN	1	0	Median	31670000	12539000	19131000	2074	455	1947	4083;4084;4085	8445;8446;8447;8448;8449;8450;8451;8452;8453;8454;8455;8456;8457;8458;8459	8454	542	15	9606
NNVNVASLTQSEIR	0	1	Unmodified	1543.7954	0.79543354	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					17.321	17.321	2	0.00021477	7442	DP1061-6	120.86	77.353			NaN	NaN	NaN	0	0	Median	0	0	0	2075	387	1948	4086	8460	8460		1	9606
NPAPPIDAVEQILPTLVR	0	1	Unmodified	1942.0888	0.088762013	210	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			23.769	23.769	2	0.042256	16040	DP1061-8	72.681	48.927			NaN	NaN	NaN	0	0	Median	0	0	0	2076	210	1949	4087	8461	8461		1	9606
NPATTNQTEFER	0	1	Unmodified	1406.6426	0.64262129	203	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	4	0				1		13.929	13.929	2	0.00014444	4458	DP1061-9	128.91	94.519			NaN	NaN	NaN	0	0	Median	3852800	0	3852800	2077	203	1950	4088	8462;8463	8463		2	9606
NPDDITQEEYGEFYK	1	0	Unmodified	1846.7897	0.78973904	101	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				18.755	18.755	2	0.0013999	10292	DP1061-7	99.539	71.875			NaN	NaN	NaN	0	0	Median	3138600	0	3138600	2078	101	1951	4089	8464	8464		1	9606
NPDLCDFTIDHQSCSR	0	1	Unmodified	1963.8153	0.81525906	307	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		17.129	17.129	3	1.1213E-05	8453	DP1061-9	118.71	102.57			NaN	NaN	NaN	0	0	Median	15802000	0	15802000	2079	307	1952	4090	8465;8466	8466		2	9606
NPDTQWITK	1	0	Unmodified	1101.5455	0.54547343	228	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	16.364	16.364	2	0.049977	6205	DP1061-10	84.743	41.874			NaN	NaN	NaN	0	0	Median	0	0	0	2080	228	1953	4091	8467	8467		1	9606
NPEHFVVCNR	0	1	Unmodified	1270.5877	0.58768937	366	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	3	0			2			13.721	13.721	2;3	0.0062241	4327	DP1061-8	101.72	66.284			NaN	NaN	NaN	0	0	Median	51886000	0	51886000	2081	366	1954	4092;4093	8468;8469;8470	8469		3	9606
NPLFCGAENTSLWELK	1	0	Unmodified	1877.8982	0.89818405	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				21.636	21.636	2	2.6049E-08	13890	DP1061-7	172.33	128.79			NaN	NaN	NaN	0	0	Median	5016000	0	5016000	2082	289	1955	4094	8471;8472	8472		2	9606
NPLFCGAENTSLWELKK	2	0	Unmodified	2005.9931	0.99314707	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				19.498	19.498	3	6.8137E-08	11217	DP1061-7	126.07	78.521			NaN	NaN	NaN	0	0	Median	10384000	0	10384000	2083	289	1956	4095	8473;8474	8473		2	9606
NPPNQSSNERPPSLLVIETK	1	1	Unmodified	2219.1546	0.15460975	39	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	1	2	0		1				17.047	17.047	3	6.5579E-05	8286	DP1061-7	111.77	80.016			NaN	NaN	NaN	0	0	Median	13217000	0	13217000	2084	39	1957	4096	8475;8476;8477	8475		3	9606
NPQNSSQSADGLR	0	1	Unmodified	1372.6331	0.63311924	282	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	yes	0	0	0	4.5	0.5				1	1	12.495	12.495	2	2.3812E-06	2710	DP1061-9	187.31	109.78			NaN	NaN	NaN	0	0	Median	24272000	0	24272000	2085	282	1958	4097;4098	8478;8479;8480;8481	8480		4	9606
NPQNSTVLAR	0	1	Unmodified	1098.5782	0.57817054	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.5	1.12		1	1	1	1	12.945	12.945	2	0.000175	3462	DP1061-10	131.22	87.453			NaN	NaN	NaN	0	0	Median	148690000	0	148690000	2086	318	1959	4099;4100;4101;4102	8482;8483;8484;8485;8486;8487;8488;8489	8483		8	9606
NPVMELNEK	1	0	Oxidation (M)	1088.5172	0.51720977	306	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	1	0	3	0			1			13.642	13.642	2	0.019077	4209	DP1061-8	80.455	44.547			NaN	NaN	NaN	0	0	Median	8011800	0	8011800	2087	306	1960	4103	8490	8490	377	1	9606
NQDATVYVGGLDEK	1	0	Unmodified	1507.7155	0.71545188	358	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	0	4	0				1		16.726	16.726	2	1.9439E-05	7884	DP1061-9	124.42	86.726			NaN	NaN	NaN	0	0	Median	3595800	0	3595800	2088	358	1961	4104	8491;8492;8493	8491		3	9606
NQDLAPNSAEQASILSLVTK	1	0	Unmodified	2098.0906	0.090612506	305	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		21.304	21.304	2	2.1963E-13	13824	DP1061-9	173.71	142.24			NaN	NaN	NaN	0	0	Median	10966000	0	10966000	2089	305	1962	4105	8494;8495	8494		2	9606
NQGGYGGSSSSSSYGSGR	0	1	Unmodified	1693.6928	0.69281896	103	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4.5	0.5				1	1	12.768	12.768	2	6.2136E-54	2997	DP1061-9	214.61	209.15			33.062	35.348	NaN	1	0	Median	122330000	4303300	118030000	2090	103	1963	4106;4107	8496;8497;8498;8499;8500;8501	8498		6	9606
NQTAEKEEFEHQQK	2	0	Unmodified	1744.8016	0.80164113	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			12.419	12.419	3	4.243E-06	2677	DP1061-8	131.32	105.59			NaN	NaN	NaN	0	0	Median	14699000	0	14699000	2091	113	1964	4108	8502;8503	8502		2	9606
NQTAEKEEFEHQQKELEK	3	0	Unmodified	2244.0659	0.065854319	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	2	3	0			1			13.467	13.467	4	0.021762	4004	DP1061-8	64.507	26.09			NaN	NaN	NaN	0	0	Median	11659000	0	11659000	2092	113	1965	4109	8504	8504		1	9606
NQVALNPQNTVFDAK	1	0	Unmodified	1657.8424	0.84238373	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.1	0.3			9	1		24.67	24.67	2	5.7238E-49	8301	DP1061-8	212.09	212.09			11.106	11.862	NaN	1	0	Median	182140000	13933000	168210000	2093	108	1966	4110;4111;4112;4113;4114;4115;4116;4117;4118;4119	8505;8506;8507;8508;8509;8510;8511;8512;8513;8514;8515;8516;8517;8518;8519;8520;8521;8522;8523;8524;8525;8526	8505		22	9606
NQVAMNPTNTVFDAK	1	0	Oxidation (M)	1664.7828	0.78281994	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			16.424	16.424	2	8.4752E-08	7281	DP1061-8	182.71	137.06			NaN	NaN	NaN	0	0	Median	28709000	0	28709000	2094	113	1967	4120	8527;8528	8528	138	2	9606
NQVAMNPTNTVFDAK	1	0	Unmodified	1648.7879	0.78790532	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			17.745	17.745	2	0.03275	8523	DP1061-8	78.324	18.898			NaN	NaN	NaN	0	0	Median	0	0	0	2095	113	1967	4121	8529	8529		1	9606
NQVAMNPTNTVFDAKR	1	1	Oxidation (M)	1820.8839	0.88393097	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			15.029	15.029	3	0.00034038	5776	DP1061-8	101.2	71.879			NaN	NaN	NaN	0	0	Median	6565300	0	6565300	2096	113	1968	4122	8530;8531;8532	8530	138	3	9606
NRENCELSDHCIK	1	1	Unmodified	1673.725	0.72498749	395	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		1				12.574	12.574	3	0.027854	2738	DP1061-7	67.275	25.875			NaN	NaN	NaN	0	0	Median	0	0	0	2097	395	1969	4123	8533	8533		1	9606
NRPLSDEELDAMFPEGYK	1	1	Oxidation (M)	2125.9626	0.9626348	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	1	1	2	0		1				17.781	17.781	3	0.0016221	9377	DP1061-7	97.271	69.059			NaN	NaN	NaN	0	0	Median	8290500	0	8290500	2098	64	1970	4124	8534	8534	59	1	9606
NSKIEISELNR	1	1	Unmodified	1301.6939	0.69392858	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	2					14.765	14.765	2;3	0.0041346	4680	DP1061-6	73.435	16.26		+	NaN	NaN	NaN	0	0	Median	6057300	6057300	0	2099	80	1971	4125;4126	8535;8536;8537	8537		3	9606
NSLESYAFNMK	1	0	Oxidation (M)	1318.5864	0.58635197	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			17.184	17.184	2	0.0079224	7835	DP1061-8	89.029	60.63			NaN	NaN	NaN	0	0	Median	18133000	0	18133000	2100	113	1972	4127	8538;8539	8538	139	2	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	2 Oxidation (M)	3117.3366	0.33655115	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	3	0			1			18.045	18.045	3	2.3249E-12	8807	DP1061-8	92.901	92.901			0.92182	0.98464	NaN	1	0	Median	37820000	23372000	14449000	2101	455	1973	4128	8540;8541;8542;8543;8544	8542	543;544;545	5	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	3 Oxidation (M)	3133.3315	0.33146577	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	3	0	3.33	0.471			2	1		17.646	17.646	3	1.7157E-07	8509	DP1061-8	100.86	90.342			NaN	NaN	NaN	0	0	Median	18069000	18069000	0	2102	455	1973	4129;4130;4131	8545;8546;8547	8546	543;544;545	3	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	Oxidation (M)	3101.3416	0.34163653	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			18.759	18.759	3	0.019882	9732	DP1061-8	66.501	48.41			NaN	NaN	NaN	0	0	Median	0	0	0	2103	455	1973	4132	8548	8548	543;544;545	1	9606
NSMPASSFQQQK	1	0	Oxidation (M)	1367.614	0.6139637	504;549	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	1	0	4.5	0.5				1	1	12.586	12.586	2	4.9651E-06	3163	DP1061-10	128.27	97.706			1.7547	1.7409	NaN	1	0	Median	10320000	1229500	9090500	2104	504;549	1974	4133;4134	8549;8550;8551;8552	8549	608	4	9606
NSPGSQVASNPR	0	1	Unmodified	1212.5847	0.58471248	487	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	2	0		1				12.407	12.407	2	0.00013272	2505	DP1061-7	129.88	62.915			NaN	NaN	NaN	0	0	Median	13187000	0	13187000	2105	487	1975	4135	8553;8554	8554		2	9606
NSSYFVEWIPNNVK	1	0	Unmodified	1695.8257	0.82567103	265;98;328;81;320;471	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	3.67	0.471			1	2		21.041	21.041	2;3	7.604500000000001E-62	12590	DP1061-8	223.87	223.87			4.2957	4.5392	2.6372	2	0	Median	229160000	40616000	188550000	2106	98;265;328;320;81;471	1976	4136;4137;4138	8555;8556;8557;8558;8559;8560;8561;8562;8563	8556		9	9606
NSTECTLILTEGDSAK	1	0	Unmodified	1737.8091	0.80909427	115	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	0	1					17.178	17.178	2	4.5906E-07	7234	DP1061-6	122.39	74.833			NaN	NaN	NaN	0	0	Median	6863100	0	6863100	2107	115	1977	4139	8564;8565;8566	8564		3	9606
NSVPVTVAMVER	0	1	Oxidation (M)	1316.6758	0.67583567	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	1	0	2	0		1				15.748	15.748	2	0.03159	6664	DP1061-7	72.848	45.519			NaN	NaN	NaN	0	0	Median	20590000	0	20590000	2108	555	1978	4140	8567	8567		1	9606
NSVSNFLHSLER	0	1	Unmodified	1401.7001	0.70007659	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	0.745	3	2	1			21.177	21.177	2;3	2.3168E-17	11070	DP1061-7	151.79	111.85			0.90269	0.99775	14.74	5	0	Median	139580000	70434000	69150000	2109	309	1979	4141;4142;4143;4144;4145;4146	8568;8569;8570;8571;8572;8573;8574;8575;8576;8577;8578;8579;8580;8581;8582;8583;8584;8585;8586;8587	8581		20	9606
NSVTPDMMEEMYK	1	0	3 Oxidation (M)	1621.631	0.63099525	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	3	0	2.5	1.5	1			1		13.82	13.82	2	0.00025094	4268	DP1061-9	107.09	80.342			NaN	NaN	NaN	0	0	Median	13744000	0	13744000	2110	185	1980	4147;4148	8588;8589;8590;8591	8591	240;241;242	4	9606
NSVTPDMMEEMYKK	2	0	3 Oxidation (M)	1749.726	0.72595827	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	3	1	4	0				1		12.56	12.56	3	0.0028436	2785	DP1061-9	82.925	66.743			NaN	NaN	NaN	0	0	Median	34668000	0	34668000	2111	185	1981	4149	8592;8593	8592	240;241;242	2	9606
NSWQEGDTYTCVVMHEALHNHYTQK	1	0	Oxidation (M)	3063.324	0.32395305	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	1	0	2	0		1				16.891	16.891	4	0.0021059	8125	DP1061-7	69.525	49.029		+	NaN	NaN	NaN	0	0	Median	18613000	18613000	0	2112	5	1982	4150	8594	8594	0	1	
NTAELQPESGKR	1	1	Unmodified	1328.6684	0.66844211	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	1	3	0			1			12.414	12.414	2	1.6910000000000002E-30	2676	DP1061-8	242.35	119.14			NaN	NaN	NaN	0	0	Median	19689000	0	19689000	2113	43	1983	4151	8595;8596	8595		2	9606
NTDEMVELR	0	1	Oxidation (M)	1121.5023	0.50228798	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	3	0			1			13.994	13.994	2	0.0057806	4639	DP1061-8	107.57	82.652			NaN	NaN	NaN	0	0	Median	33964000	0	33964000	2114	232	1984	4152	8597;8598	8598	295	2	9606
NTDSDVNLVVPLEVIK	1	0	Unmodified	1753.9462	0.9461801	413	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				21.336	21.336	2	6.3956E-05	13516	DP1061-7	114.56	80.177			NaN	NaN	NaN	0	0	Median	5180900	0	5180900	2115	413	1985	4153	8599;8600;8601	8600		3	9606
NTENNDVEISETK	1	0	Unmodified	1491.6689	0.66889562	380	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	0	3					13.437	13.437	2	0.00086026	3168	DP1061-6	123.62	68.069			NaN	NaN	NaN	0	0	Median	0	0	0	2116	380	1986	4154;4155;4156	8602;8603;8604	8603		3	9606
NTGVILANDANAER	0	1	Unmodified	1456.727	0.72701962	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				15.338	15.338	2	2.6241E-08	6013	DP1061-7	193.22	141.27			NaN	NaN	NaN	0	0	Median	40957000	0	40957000	2117	184	1987	4157	8605;8606	8606		2	9606
NTIEMQAITALAHLR	0	1	Oxidation (M)	1696.893	0.89303909	479	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	1	0	3	0			1			20.972	20.972	3	0.00021848	12570	DP1061-8	101.75	69.926			NaN	NaN	NaN	0	0	Median	8186200	0	8186200	2118	479	1988	4158	8607;8608	8608	576	2	9606
NTLQLHR	0	1	Unmodified	880.4879	0.48789897	228	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					2	16.854	16.854	2	0.017032	3033	DP1061-10	100.74	37.764			NaN	NaN	NaN	0	0	Median	84006000	0	84006000	2119	228	1989	4159;4160	8609;8610;8611;8612	8609		4	9606
NVDMLSELVQEYDEPILK	1	0	Oxidation (M)	2150.0453	0.045301798	460	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	1	0	3	0			1			22.906	22.906	2	8.176E-09	14859	DP1061-8	167.61	115.11			NaN	NaN	NaN	0	0	Median	5190600	0	5190600	2120	460	1990	4161	8613;8614;8615	8615	554	3	9606
NVESIAEQMENPDLK	1	0	Oxidation (M)	1731.7985	0.79852959	446	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	1	0	2	0		1				16.186	16.186	2	7.0332E-09	7230	DP1061-7	193.49	151.49			NaN	NaN	NaN	0	0	Median	10338000	0	10338000	2121	446	1991	4162	8616;8617	8617	531	2	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	2	1	Unmodified	3141.4195	0.41950423	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2.5	0.5		1	1			12.455	12.455	5	3.412E-07	2547	DP1061-7	111.72	93			NaN	NaN	NaN	0	0	Median	91306000	0	91306000	2122	182	1992	4163;4164	8618;8619;8620;8621;8622	8618		5	9606
NVLCSACSGQGGK	1	0	Unmodified	1336.5864	0.58636874	60	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	4	0				1		13.13	13.13	2	0.0030744	3438	DP1061-9	95.618	60.845			NaN	NaN	NaN	0	0	Median	6035700	0	6035700	2123	60	1993	4165	8623;8624	8624		2	9606
NVMVEPHRHEGVFICR	0	2	Oxidation (M)	1994.9567	0.95671876	136	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	1	1	4	0				2		14.363	14.363	3;4	0.0080587	4952	DP1061-9	77.527	57.348			NaN	NaN	NaN	0	0	Median	46953000	0	46953000	2124	136	1994	4166;4167	8625;8626;8627	8627	182	3	9606
NVQDAIADAEQR	0	1	Unmodified	1328.6321	0.6320566	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0		1				16.623	16.623	2	0.014927	7906	DP1061-7	83	61.628		+	NaN	NaN	NaN	0	0	Median	15900000	15900000	0	2125	20	1995	4168	8628;8629	8628		2	9606
NVQLQENEIR	0	1	Unmodified	1241.6364	0.6364137	163	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	2.33	1.25	1	1		1		14.997	14.997	2	3.6936E-26	5698	DP1061-9	186.76	129.72			97.18	103.9	NaN	1	0	Median	1493699999.9999998	16788000	1476999999.9999998	2126	163	1996	4169;4170;4171	8630;8631;8632;8633;8634;8635;8636;8637;8638;8639;8640	8634		11	9606
NVQLTENEIR	0	1	Unmodified	1214.6255	0.62551466	233	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		15.401	15.401	2	0.00030661	6281	DP1061-9	138.4	76.616			NaN	NaN	NaN	0	0	Median	15807000	0	15807000	2127	233	1997	4172	8641;8642	8642		2	9606
NVSGISFTENMGSSQQK	1	0	Oxidation (M)	1828.8261	0.82614132	199	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	1	0	2					15.988	15.988	2	0.0035509	5804	DP1061-6	92.906	41.695			NaN	NaN	NaN	0	0	Median	0	0	0	2128	199	1998	4173;4174	8643;8644	8643	250	2	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	2 Oxidation (M)	2903.3753	0.37531992	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	2	0	2.33	1.15	3	2	2	2		21.538	21.538	2;3	1.4279E-21	13211	DP1061-8	163.44	139.85		+	NaN	NaN	NaN	0	0	Median	156310000	156310000	0	2129	17	1999	4175;4176;4177;4178;4179;4180;4181;4182;4183	8645;8646;8647;8648;8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659;8660;8661;8662;8663;8664;8665;8666;8667;8668;8669	8662	5;6	25	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	Oxidation (M)	2887.3804	0.3804053	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	2	0		2				23.138	23.138	2;3	3.3585E-06	15611	DP1061-7	93.765	67.275		+	NaN	NaN	NaN	0	0	Median	3335300	3335300	0	2130	17	1999	4184;4185	8670;8671	8671	5;6	2	9606
NVTVQPDDPISFMQLTAK	1	0	Oxidation (M)	2018.9983	0.99829203	215	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	2	0		1				19.738	19.738	2	0.0012418	11500	DP1061-7	102.5	68.537			NaN	NaN	NaN	0	0	Median	4178400	0	4178400	2131	215	2000	4186	8672;8673;8674	8673	279	3	9606
NYEVRPEMLK	1	1	Unmodified	1277.6438	0.64380726	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	1	2	0		1				15.467	15.467	3	0.028232	6252	DP1061-7	63.184	24.47			NaN	NaN	NaN	0	0	Median	6280200	0	6280200	2132	428	2001	4187	8675	8675		1	9606
NYILDQTNVYGSAQR	0	1	Unmodified	1740.8431	0.84311201	472	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				17.973	17.973	2	0.00020433	9641	DP1061-7	113.65	75.681			NaN	NaN	NaN	0	0	Median	9613000	0	9613000	2133	472	2002	4188	8676	8676		1	9606
NYQQNYQNSESGEK	1	0	Unmodified	1687.7074	0.70740639	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		12.771	12.771	2	0.00013287	3177	DP1061-9	146.71	121.87			NaN	NaN	NaN	0	0	Median	4873300	0	4873300	2134	262	2003	4189	8677;8678	8678		2	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	1	1	Unmodified	3256.3889	0.38893238	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				2		13.41	13.41	3;4	1.5645E-62	3740	DP1061-9	186.82	182.77			24.812	25.471	NaN	1	0	Median	156910000	4569100	152350000	2135	262	2004	4190;4191	8679;8680;8681;8682;8683;8684;8685;8686;8687;8688;8689;8690	8680		12	9606
NYYEQWGK	1	0	Unmodified	1086.4771	0.47705951	137	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.5	16.5	2	0.028532	7625	DP1061-9	80.229	48.925			NaN	NaN	NaN	0	0	Median	10480000	0	10480000	2136	137	2005	4192	8691	8691		1	9606
PAPAVGEAEDKENQQATSGPNQPSVR	1	1	Unmodified	2676.2739	0.27394961	126	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3.5	0.5			1	1		14.11	14.11	3	2.8163E-24	4826	DP1061-8	181.82	156.35			NaN	NaN	NaN	0	0	Median	54572000	0	54572000	2137	126	2006	4193;4194	8692;8693;8694;8695;8696;8697;8698;8699;8700	8693		9	9606
PAVIGDVLQVYSGSEGR	0	1	Unmodified	1745.8948	0.89481323	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				20.534	20.534	2	8.3018E-05	12538	DP1061-7	115.12	62.775			NaN	NaN	NaN	0	0	Median	4245500	0	4245500	2138	463	2007	4195	8701;8702	8701		2	9606
PEFLEDPSVLTK	1	0	Unmodified	1373.7078	0.70784731	175	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	4	0				1		19.276	19.276	2	0.0076861	11364	DP1061-9	89.548	36.969			NaN	NaN	NaN	0	0	Median	3789500	0	3789500	2139	175	2008	4196	8703	8703		1	9606
PGAALDPGCVLAK	1	0	Unmodified	1267.6595	0.65945733	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.08	17.08	2	0.016489	7048	DP1061-6	79.07	47.136			NaN	NaN	NaN	0	0	Median	17707000	17707000	0	2140	309	2009	4197	8704	8704		1	9606
PGASLPPLDLQALEK	1	0	Unmodified	1547.8559	0.85590853	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		20.696	20.696	2	3.9288E-13	12590	DP1061-7	154.36	114.73			0.74447	0.77911	11.292	2	0	Median	130630000	80857000	49769000	2141	116	2010	4198;4199	8705;8706;8707;8708;8709;8710	8708		6	9606
PGETEEPRPPEQQDQEGGEAAK	1	1	Unmodified	2378.0622	0.062225504	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3	0			1			13.113	13.113	3	7.3214E-05	3571	DP1061-8	111.62	85.277			NaN	NaN	NaN	0	0	Median	16399000	0	16399000	2142	450	2011	4200	8711;8712;8713	8713		3	9606
PGETEEPRPPEQQDQEGGEAAK	1	1	Acetyl (Protein N-term)	2420.0728	0.07279019	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	1	0	1	3	0			1			13.08	13.08	3	0.035972	3569	DP1061-8	53.037	32.471			NaN	NaN	NaN	0	0	Median	0	0	0	2143	450	2011	4201	8714	8714		1	9606
PLISVYSEK	1	0	Unmodified	1034.5648	0.56481189	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		16.653	16.653	2	0.0010178	7719	DP1061-9	113.26	56.078			19.179	20.048	NaN	1	0	Median	92655000	4360600	88295000	2144	162	2012	4202	8715;8716;8717;8718	8715		4	9606
PLISVYSEKGESSGK	2	0	Unmodified	1579.8094	0.80935227	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		15.02	15.02	2;3	6.6661E-18	5783	DP1061-9	209.19	168.1			NaN	NaN	NaN	0	0	Median	105710000	0	105710000	2145	162	2013	4203;4204	8719;8720;8721;8722	8719		4	9606
PLVLPSPLVTPGSNSQER	0	1	Unmodified	1890.0211	0.021076378	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2.5	0.5		1	1			19.834	19.834	2	2.172E-08	11512	DP1061-7	155.47	127.42			NaN	NaN	NaN	0	0	Median	17169000	0	17169000	2146	454	2014	4205;4206	8723;8724;8725;8726	8723		4	9606
PSETLWEIAKAEVEK	2	0	Unmodified	1728.8934	0.89341625	424	Q8TCX1	DYNC2LI1	Cytoplasmic dynein 2 light intermediate chain 1	yes	yes	0	0	1	3.5	0.5			1	1		19.496	19.496	2	0.0044551	10716	DP1061-8	73.887	73.887			0.71021	0.77612	20.411	2	0	Median	177040000	96995000	80046000	2147	424	2015	4207;4208	8727;8728	8727		2	9606
PVIVEPLEQLDDEDGLPEK	1	0	Unmodified	2134.0681	0.06814573	139	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		2				20.938	20.938	2	0.0078765	12970	DP1061-7	88.706	58.37			NaN	NaN	NaN	0	0	Median	4091200	0	4091200	2148	139	2016	4209;4210	8729;8730	8730		2	9606
PVLNFYEANFPANVMDVIAR	0	1	Oxidation (M)	2295.1358	0.13578856	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	3	0			2			22.86	22.86	2;3	8.4614E-12	14740	DP1061-8	147.56	122.84			NaN	NaN	NaN	0	0	Median	15897000	0	15897000	2149	130	2017	4211;4212	8731;8732;8733;8734	8731	175	4	9606
PVSSAASVYAGAGGSGSR	0	1	Unmodified	1579.759	0.75904803	92	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		14.756	14.756	2	5.041E-08	5455	DP1061-9	151.7	124.02			NaN	NaN	NaN	0	0	Median	8094000	0	8094000	2150	92	2018	4213	8735;8736;8737	8735		3	9606
QAASSLQQASLK	1	0	Unmodified	1230.6568	0.65681479	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			13.886	13.886	2	8.7975E-07	4509	DP1061-8	132.32	132.32			1.7129	1.8297	NaN	1	0	Median	77227000	28097000	49131000	2151	166	2019	4214	8738;8739;8740;8741	8739		4	9606
QAELVPATVNDYR	0	1	Unmodified	1474.7416	0.74160705	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					17.181	17.181	2	0.00061589	7252	DP1061-6	152.54	93.472			NaN	NaN	NaN	0	0	Median	8549100	0	8549100	2152	68	2020	4215	8742;8743	8742		2	9606
QAEQLSAAGEGGDAGR	0	1	Unmodified	1515.6914	0.6913624	511	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	5	0					1	13.46	13.46	2	1.6299E-07	4074	DP1061-10	132.14	86.775			NaN	NaN	NaN	0	0	Median	1077700	0	1077700	2153	511	2021	4216	8744;8745	8745		2	9606
QAHLTNQYMQR	0	1	Oxidation (M)	1404.6568	0.65683157	117	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	1	0	3	0			1			12.481	12.481	3	0.019016	2793	DP1061-8	61.213	30.355			NaN	NaN	NaN	0	0	Median	35430000	0	35430000	2154	117	2022	4217	8746	8746	164	1	9606
QAMFLNLVYK	1	0	Oxidation (M)	1241.6478	0.64783001	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				19.548	19.548	2	0.013263	11236	DP1061-7	84.743	45.781			NaN	NaN	NaN	0	0	Median	14427000	0	14427000	2155	289	2023	4218	8747;8748	8747	362	2	9606
QAQAAVLAVLPR	0	1	Unmodified	1235.735	0.73500553	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		18.531	18.531	2	0.0027221	10150	DP1061-9	104.2	55.406			NaN	NaN	NaN	0	0	Median	22610000	0	22610000	2156	462	2024	4219	8749;8750	8749		2	9606
QAQIEVVPSASALIIK	1	0	Unmodified	1665.9665	0.96652161	152	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					2	24.262	24.262	2	0.00071331	13630	DP1061-10	102.97	87.974			NaN	NaN	NaN	0	0	Median	65862000	0	65862000	2157	152	2025	4220;4221	8751;8752;8753;8754	8752		4	9606
QAVEMKNDKSEEEQSSSSVK	3	0	Oxidation (M)	2255.0223	0.022334524	99	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	2	4	0				1		12.417	12.417	3	0.0064111	2605	DP1061-9	82.609	50.518			NaN	NaN	NaN	0	0	Median	0	0	0	2158	99	2026	4222	8755	8755	124	1	9606
QAVTNPNNTFYATK	1	0	Unmodified	1567.7631	0.76307078	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			15.463	15.463	2	1.2889E-05	6297	DP1061-8	131.17	92.419			NaN	NaN	NaN	0	0	Median	11804000	0	11804000	2159	166	2027	4223	8756;8757	8757		2	9606
QDAQSLHGDIPQK	1	0	Unmodified	1435.7056	0.7055559	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		2				13.261	13.261	2;3	4.8346E-06	3516	DP1061-7	179.94	123.92			28.091	29.431	NaN	1	0	Median	79283000	2893000	76390000	2160	508	2028	4224;4225	8758;8759;8760;8761	8760		4	9606
QDAQVVLYR	0	1	Unmodified	1090.5771	0.57710791	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.922	15.922	2	0.00023945	5712	DP1061-6	140.5	85.952			NaN	NaN	NaN	0	0	Median	5268200	0	5268200	2161	271	2029	4226	8762;8763	8762		2	9606
QDSLVINLNR	0	1	Unmodified	1170.6357	0.63568542	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					17.773	17.773	2	4.8925E-05	7943	DP1061-6	141.52	98.437			NaN	NaN	NaN	0	0	Median	12713000	0	12713000	2162	559	2030	4227	8764;8765	8765		2	9606
QEAESQPCTSTLPR	0	1	Unmodified	1602.7308	0.73078437	393	Q6ZN17	LIN28B	Protein lin-28 homolog B	yes	yes	0	0	0	4	0				1		14.142	14.142	2	0.0041552	4733	DP1061-9	103.21	61.118			NaN	NaN	NaN	0	0	Median	0	0	0	2163	393	2031	4228	8766	8766		1	9606
QEDKDDLDVTELTNEDLLDQLVK	2	0	Unmodified	2687.3025	0.30251535	175	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	3	0			1			22.369	22.369	3	0.0075589	14370	DP1061-8	69.27	45.063			NaN	NaN	NaN	0	0	Median	6101900	0	6101900	2164	175	2032	4229	8767	8767		1	9606
QEEMNSQQEEEEMETDAR	0	1	2 Oxidation (M)	2243.843	0.84304953	319	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	2	0	2	0		1				13.021	13.021	2	0.00018168	3312	DP1061-7	111.88	111.01			NaN	NaN	NaN	0	0	Median	0	0	0	2165	319	2033	4230	8768	8768	426;427	1	9606
QEGIIFIGPPPSAIR	0	1	Unmodified	1593.8879	0.88787736	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.12	0.331			7	1		25.744	25.744	2	6.889E-62	12085	DP1061-8	218.94	218.94			0.73169	0.77324	8.6646	2	0	Median	257640000	144200000	113440000	2166	455	2034	4231;4232;4233;4234;4235;4236;4237;4238	8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781	8770		13	9606
QELILSNSEDK	1	0	Unmodified	1274.6354	0.63541065	216	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	2	0		1				15.438	15.438	2	0.036562	6234	DP1061-7	83.862	31.283			NaN	NaN	NaN	0	0	Median	0	0	0	2167	216	2035	4239	8782	8782		1	9606
QEQQEGPVGPAPSRPALQEK	1	1	Unmodified	2145.0814	0.081444804	425	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	1	2	0		1				14.291	14.291	3	7.4939E-13	4792	DP1061-7	161.75	117.96			NaN	NaN	NaN	0	0	Median	10992000	0	10992000	2168	425	2036	4240	8783;8784	8784		2	9606
QEQVTAAVAHAVEQQMQK	1	0	Oxidation (M)	2010.9793	0.97928792	404	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	1	0	2	0		1				16.743	16.743	3	0.054467	7917	DP1061-7	44.1	15.96			NaN	NaN	NaN	0	0	Median	9894600	0	9894600	2169	404	2037	4241	8785	8785		1	9606
QESGSEIHVEVK	1	0	Unmodified	1340.6572	0.65720872	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0			1			13.4	13.4	2	0.0092997	3968	DP1061-8	105.17	57.074			NaN	NaN	NaN	0	0	Median	0	0	0	2170	182	2038	4242	8786	8786		1	9606
QEYDESGPSIVHR	0	1	Unmodified	1515.6954	0.69538514	261	P63261;P60709;Q6S8J3;P0CG38;A5A3E0;P0CG39;Q9BYX7	ACTG1;ACTB;POTEE;POTEI;POTEF;POTEJ;POTEKP	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed	yes	no	0	0	0	4	0				1		14.381	14.381	3	0.0027153	5044	DP1061-9	74.133	74.133			1.6967	1.814	NaN	1	0	Median	26820000	10389000	16431000	2171	261	2039	4243	8787	8787		1	9606
QFSQYIK	1	0	Unmodified	912.47052	0.47051757	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		15.54	15.54	2	0.0035349	6382	DP1061-9	114.72	79.103			NaN	NaN	NaN	0	0	Median	47680000	0	47680000	2172	185	2040	4244	8788;8789	8789		2	9606
QFSSADEAALKEPIIK	2	0	Unmodified	1745.92	0.91996535	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.17	0.373			5	1		17.19	17.19	2;3	1.4149E-05	7617	DP1061-8	101.2	101.2			0.84278	0.962	2.9387	5	0	Median	324870000	173510000	151360000	2173	501	2041	4245;4246;4247;4248;4249;4250	8790;8791;8792;8793;8794;8795;8796;8797;8798;8799;8800;8801;8802;8803;8804;8805;8806;8807	8792		18	9606
QFSSSYLSR	0	1	Unmodified	1073.5142	0.5141733	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					15.846	15.846	2	0.011431	5663	DP1061-6	96.034	27.651		+	NaN	NaN	NaN	0	0	Median	6665900	6665900	0	2174	19	2042	4251	8808;8809	8809		2	9606
QGDEVSVHYDPMIAK	1	0	Oxidation (M)	1703.7825	0.78248559	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			2			15.758	15.758	2	8.3389E-10	6445	DP1061-8	119.74	119.74			0.84824	0.90605	5.3903	2	0	Median	30402000	15513000	14889000	2175	455	2043	4252;4253	8810;8811;8812;8813;8814;8815	8815	546	5	9606
QGGGGGGGSVPGIER	0	1	Unmodified	1283.6218	0.62182627	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			13.957	13.957	2	0.00014985	4503	DP1061-8	107.65	64.902			2.3963	2.5549	NaN	1	0	Median	66604000	19181000	47423000	2176	209	2044	4254	8816;8817;8818;8819	8817		4	9606
QGPLHGMLINTPYVTK	1	0	Oxidation (M)	1783.9291	0.92909025	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	4	2				17.503	17.503	2;3	5.9433E-05	6493	DP1061-6	98.182	77.867			0.74617	0.81763	11.78	4	0	Median	326700000	171700000	155000000	2177	309	2045	4255;4256;4257;4258;4259;4260	8820;8821;8822;8823;8824;8825;8826;8827;8828;8829	8822	405	10	9606
QGPLHGMLINTPYVTK	1	0	Unmodified	1767.9342	0.93417563	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.995	17.995	3	8.2148E-05	8183	DP1061-6	88.951	60.842			0.90114	0.97521	0.41608	2	0	Median	30290000	15178000	15111000	2178	309	2045	4261;4262	8830;8831;8832	8831		3	9606
QGTIFLAGPPLVK	1	0	Unmodified	1339.7864	0.7863724	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.962	19.962	2	0.00014079	12033	DP1061-9	115.78	115.78			0.81901	0.86542	2.2551	2	0	Median	192190000	105800000	86392000	2179	501	2046	4263;4264	8833;8834;8835;8836;8837;8838;8839;8840;8841	8837		9	9606
QGVDADINGLR	0	1	Unmodified	1156.5836	0.58364985	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					16.192	16.192	2	0.0016249	5939	DP1061-6	115.71	73.116		+	NaN	NaN	NaN	0	0	Median	82596000	82596000	0	2180	19	2047	4265	8842;8843	8842		2	9606
QGYVIYR	0	1	Unmodified	897.47085	0.47085192	228	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					2	16.426	16.426	2	0.0026549	5668	DP1061-10	118.01	64.301			NaN	NaN	NaN	0	0	Median	17709000	0	17709000	2181	228	2048	4266;4267	8844;8845;8846	8844		3	9606
QIESLETEMEFR	0	1	Oxidation (M)	1526.6923	0.6922736	74	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	0	2	0		2				17.249	17.249	2	0.0074139	8685	DP1061-7	89.171	63.785			NaN	NaN	NaN	0	0	Median	0	0	0	2182	74	2049	4268;4269	8847;8848	8847	71	2	9606
QIFNGTFVK	1	0	Unmodified	1052.5655	0.56548059	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	5	0					1	23.044	23.044	2	0.0095469	11502	DP1061-10	101.25	45.131			NaN	NaN	NaN	0	0	Median	18278000	0	18278000	2183	132	2050	4270	8849;8850	8849		2	9606
QILDPAASVTGSR	0	1	Unmodified	1313.6939	0.69392858	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.769	16.769	2	3.0149E-05	8026	DP1061-7	158.56	88.164			NaN	NaN	NaN	0	0	Median	13207000	0	13207000	2184	182	2051	4271	8851;8852	8852		2	9606
QILDSAASLTGSK	1	0	Unmodified	1289.6827	0.68269519	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				16.823	16.823	2	7.1178E-05	8038	DP1061-7	124.12	52.51			NaN	NaN	NaN	0	0	Median	49863000	0	49863000	2185	182	2052	4272;4273	8853;8854;8855;8856	8855		4	9606
QILDSAASLTGSKR	1	1	Unmodified	1445.7838	0.78380622	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				15.571	15.571	3	0.026726	6481	DP1061-7	58.071	30.158			NaN	NaN	NaN	0	0	Median	9913300	0	9913300	2186	182	2053	4274	8857	8857		1	9606
QILMASGSTTFTK	1	0	Oxidation (M)	1399.7017	0.70171607	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	1	0	1					15.887	15.887	2	0.0012935	5618	DP1061-6	104.79	59.773			NaN	NaN	NaN	0	0	Median	6935800	0	6935800	2187	387	2054	4275	8858;8859	8859	485	2	9606
QINVSTDDSEVK	1	0	Unmodified	1333.6361	0.63613893	46	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			14.224	14.224	2	0.0014722	4963	DP1061-8	112.83	74.266			NaN	NaN	NaN	0	0	Median	28577000	0	28577000	2188	46	2055	4276	8860;8861	8860		2	9606
QINWTVLYR	0	1	Unmodified	1191.64	0.64004252	275	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	25.451	25.451	2	0.010494	14502	DP1061-10	98.629	47.57			NaN	NaN	NaN	0	0	Median	16299000	0	16299000	2189	275	2056	4277	8862;8863	8863		2	9606
QISNLQQSISDAEQR	0	1	Unmodified	1715.8438	0.84384029	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3.73	1.6	2	1	1	1	6	17.357	17.357	2;3	3.9907E-06	8880	DP1061-7	124.38	82.673		+	NaN	NaN	NaN	0	0	Median	165270000	165270000	0	2190	80	2057	4278;4279;4280;4281;4282;4283;4284;4285;4286;4287;4288	8864;8865;8866;8867;8868;8869;8870;8871;8872;8873;8874;8875;8876;8877;8878	8874		15	9606
QISRPSAAGINLMIGSTR	0	2	Oxidation (M)	1886.9996	0.99962943	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	1	2	0		1				16.827	16.827	3	0.0012991	8159	DP1061-7	99.371	66.841			NaN	NaN	NaN	0	0	Median	12892000	0	12892000	2191	296	2058	4289	8879	8879	367	1	9606
QITIIDSPSFIVSPLNSSSALALR	0	1	Unmodified	2528.385	0.38500361	475	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	3	0			1			23.488	23.488	2	1.8256000000000001E-34	15677	DP1061-8	213.51	130.58			NaN	NaN	NaN	0	0	Median	3205500	0	3205500	2192	475	2059	4290	8880;8881;8882;8883	8881		4	9606
QITQSALLAEAR	0	1	Unmodified	1299.7147	0.71466402	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.034	17.034	2	0.0024261	6990	DP1061-6	99.568	48.292			6.2263	7.1552	NaN	1	0	Median	13885000	2672000	11213000	2193	271	2060	4291	8884	8884		0	9606
QIVGTPVNSEDSDTR	0	1	Unmodified	1616.7642	0.76419299	374	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	3	0			1			14.772	14.772	2	0.00012077	5681	DP1061-8	124.12	47.28			NaN	NaN	NaN	0	0	Median	0	0	0	2194	374	2061	4292	8885	8885		1	9606
QKADEAYLIGR	1	1	Unmodified	1262.6619	0.66190017	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.33	0.471		2	1			14.995	14.995	2;3	0.00031123	5697	DP1061-7	117.53	71.069			0.94995	1.021	4.6722	2	0	Median	822120000	390200000	431920000	2195	116	2062	4293;4294;4295	8886;8887;8888;8889;8890;8891;8892;8893	8890		8	9606
QKLDPAASVTGSK	2	0	Unmodified	1300.6987	0.69867961	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	1.5	0.5	2	2				13.172	13.172	2;3	0.00045754	2792	DP1061-6	124.67	86.101			NaN	NaN	NaN	0	0	Median	69375000	0	69375000	2196	182	2063	4296;4297;4298;4299	8894;8895;8896;8897;8898	8894		5	9606
QKVDSLLENLEK	2	0	Unmodified	1414.7668	0.76675917	99	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				2		17.72	17.72	2;3	0.021986	9196	DP1061-9	65.809	45.966			NaN	NaN	NaN	0	0	Median	17327000	0	17327000	2197	99	2064	4300;4301	8899;8900;8901	8900		3	9606
QKVEGTEPTTAFNLFVGNLNFNK	2	0	Unmodified	2567.302	0.30200227	134	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.5		1	1			21.7	21.7	3	2.3281E-23	13476	DP1061-8	189.55	163.97			NaN	NaN	NaN	0	0	Median	44742000	0	44742000	2198	134	2065	4302;4303	8902;8903;8904;8905;8906;8907	8906		6	9606
QLAAATAPIPGATLLDDLITPAK	1	0	Unmodified	2260.2678	0.26784859	467	Q9BRR8	GPATCH1	G patch domain-containing protein 1	yes	yes	0	0	0	2	0		1				23.979	23.979	2	0.0038686	16553	DP1061-7	97.129	79.034			NaN	NaN	NaN	0	0	Median	980870	0	980870	2199	467	2066	4304	8908	8908		1	9606
QLASGLLLVTGPLVLNR	0	1	Unmodified	1763.0669	0.066904359	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				3		23.335	23.335	2;3	2.6434E-81	15775	DP1061-9	241.35	241.35			25.281	27.03	NaN	1	0	Median	117070000	3921700	113150000	2200	287	2067	4305;4306;4307	8909;8910;8911;8912;8913;8914;8915;8916	8909		8	9606
QLCRPLTCEK	1	1	Unmodified	1303.6377	0.63767603	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	1	2	0		1				12.715	12.715	3	0.050306	2996	DP1061-7	56.632	9.6773			NaN	NaN	NaN	0	0	Median	5193200	0	5193200	2201	268	2068	4308	8917	8917		1	9606
QLDSIVGER	0	1	Unmodified	1015.5298	0.52982336	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					15.482	15.482	2	0.050418	5159	DP1061-6	72.325	18.832		+	NaN	NaN	NaN	0	0	Median	12845000	12845000	0	2202	18	2069	4309	8918	8918		1	9606
QLEEAEEEAQR	0	1	Unmodified	1330.6001	0.60008777	158	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					13.445	13.445	2	0.017039	3195	DP1061-6	99.973	60.036			NaN	NaN	NaN	0	0	Median	0	0	0	2203	158	2070	4310	8919	8919		1	9606
QLEKDFSSMK	2	0	Oxidation (M)	1227.5805	0.58053831	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	1	4	0				1		12.573	12.573	2	0.010089	2866	DP1061-9	117.31	45.969			NaN	NaN	NaN	0	0	Median	5504400	0	5504400	2204	169	2071	4311	8920	8920	216	1	9606
QLENSLR	0	1	Unmodified	858.45593	0.45593014	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				12.912	12.912	2	0.03512	3134	DP1061-7	81.297	18.582			NaN	NaN	NaN	0	0	Median	8774300	0	8774300	2205	558	2072	4312	8921	8921		1	9606
QLFHPEQLITGK	1	0	Unmodified	1409.7667	0.76669959	264;394;465	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.67	0.471			1	2		17.893	17.893	2;3	3.6531E-06	9428	DP1061-9	191.52	0			3.4483	3.6046	NaN	1	0	Median	62534000	6148300	56385000	2206	264;394;465	2073	4313;4314;4315	8922;8923;8924;8925;8926	8926		5	9606
QLFHPEQLITGKEDAANNYAR	1	1	Unmodified	2414.1979	0.19787154	264;394;465	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	3.4	0.49			3	2		17.859	17.859	3;4	1.0442E-36	9032	DP1061-9	178.57	156.87			3.4868	3.5794	14.205	3	0	Median	173120000	33556000	139570000	2207	264;394;465	2074	4316;4317;4318;4319;4320	8927;8928;8929;8930;8931;8932;8933;8934;8935;8936;8937;8938;8939;8940	8934		14	9606
QLIVANAGDSR	0	1	Unmodified	1142.6044	0.60438529	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3.5	0.5			1	1		14.501	14.501	2	0.0034456	5281	DP1061-8	107.21	60.018			NaN	NaN	NaN	0	0	Median	42986000	0	42986000	2208	43	2075	4321;4322	8941;8942;8943;8944	8941		4	9606
QLLQVIQEK	1	0	Unmodified	1097.6445	0.64445919	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	4	0				1		17.013	17.013	2	0.038537	8293	DP1061-9	75.043	25.62			NaN	NaN	NaN	0	0	Median	3595700	0	3595700	2209	491	2076	4323	8945	8945		1	9606
QLQQAQAAGAEQEVEK	1	0	Unmodified	1726.8486	0.84859132	170	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	4	0				1		14.301	14.301	2	3.5552E-11	4893	DP1061-9	190.66	74.356			NaN	NaN	NaN	0	0	Median	4089900	0	4089900	2210	170	2077	4324	8946;8947	8947		2	9606
QLQSEQPQTAAAR	0	1	Unmodified	1426.7165	0.71645494	531	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	3	0			1			12.648	12.648	2	0.0016767	3057	DP1061-8	113.69	54.337			NaN	NaN	NaN	0	0	Median	0	0	0	2211	531	2078	4325	8948	8948		1	9606
QLTEEDGVHSVIEENIK	1	0	Unmodified	1938.9535	0.95345032	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.22	1.31	4	2		3		17.524	17.524	2;3	5.621E-176	7251	DP1061-6	309.49	309.49			0.85194	0.92802	19.064	6	0	Median	595060000	324330000	270730000	2212	309	2079	4326;4327;4328;4329;4330;4331;4332;4333;4334	8949;8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974;8975;8976;8977	8951		29	9606
QLTVQMMQNPQILAALQER	0	1	2 Oxidation (M)	2243.1402	0.14022201	221	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	2	0	3	0			1			19.593	19.593	2	4.9318E-11	10798	DP1061-8	135.45	96.027			NaN	NaN	NaN	0	0	Median	0	0	0	2213	221	2080	4335	8978	8978	284;285	1	9606
QLVDTTVELANK	1	0	Unmodified	1329.714	0.71399532	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				16.867	16.867	2	0.00011812	8130	DP1061-7	131.09	67.903			NaN	NaN	NaN	0	0	Median	10509000	0	10509000	2214	64	2081	4336	8979;8980	8979		2	9606
QLYQTLTDYDIR	0	1	Unmodified	1527.7569	0.75692277	266	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	4	0				1		19.292	19.292	2	0.0020173	11298	DP1061-9	159.34	99.317			NaN	NaN	NaN	0	0	Median	12096000	0	12096000	2215	266	2082	4337	8981;8982	8981		2	9606
QMASQAPAVNTLTESTLK	1	0	Oxidation (M)	1904.9513	0.95134183	159	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	1	0	1	0	1					16.94	16.94	2	0.0047143	6973	DP1061-6	87.447	59.894			NaN	NaN	NaN	0	0	Median	0	0	0	2216	159	2083	4338	8983	8983	201	1	9606
QMEQISQFLQAAER	0	1	Oxidation (M)	1693.8094	0.80936904	164	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	23.479	23.479	2	1.0883E-05	12170	DP1061-10	130.44	58.115			NaN	NaN	NaN	0	0	Median	14478000	0	14478000	2217	164	2084	4339	8984;8985;8986	8986	208	3	9606
QMFLTQTDTGDDR	0	1	Oxidation (M)	1542.662	0.6620361	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					15.581	15.581	2	5.8007E-05	5301	DP1061-6	164.97	125.03			NaN	NaN	NaN	0	0	Median	5721000	0	5721000	2218	271	2085	4340	8987;8988	8988	345	2	9606
QMGELLGR	0	1	Oxidation (M)	918.4593	0.45930096	571				yes	yes	0	1	0	1	0	1					14.457	14.457	2	0.0085634	4265	DP1061-6	87.323	10.265	+		0.75817	0.88006	NaN	1	0	Median	10860000	5089400	5770800	2219	571	2086	4341	8989	8989	665	1	9606
QMGVTEWSVNGSPIDTLR	0	1	Oxidation (M)	2004.9575	0.95748984	78	O95785	WIZ	Protein Wiz	yes	yes	0	1	0	2	0		1				19.799	19.799	2	0.016731	11592	DP1061-7	74.678	34.525			NaN	NaN	NaN	0	0	Median	0	0	0	2220	78	2087	4342	8990	8990	76	1	9606
QMLDPANYGTGMER	0	1	2 Oxidation (M)	1613.6814	0.68139134	182	P46013	MKI67	Antigen KI-67	yes	yes	0	2	0	1.5	0.5	1	1				15.325	15.325	2	0.0074194	5022	DP1061-6	77.74	52.673			NaN	NaN	NaN	0	0	Median	24076000	0	24076000	2221	182	2088	4343;4344	8991;8992;8993;8994	8992	230;231	4	9606
QMLDPANYGTGMER	0	1	Oxidation (M)	1597.6865	0.68647672	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1	0	1					16.487	16.487	2	0.0021908	6347	DP1061-6	93.561	63.794			NaN	NaN	NaN	0	0	Median	2492300	0	2492300	2222	182	2088	4345	8995;8996	8995	230;231	2	9606
QMVIDVLHPGK	1	0	Oxidation (M)	1251.6645	0.66454271	250	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	5	0					1	24.048	24.048	3	0.026964	12946	DP1061-10	57.149	34.137			NaN	NaN	NaN	0	0	Median	12816000	0	12816000	2223	250	2089	4346	8997;8998	8998	309	2	9606
QNAQCLHGDIAQSQR	0	1	Unmodified	1724.8013	0.80126397	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2.5	0.5		1	1			12.845	12.845	3	0.0035193	3049	DP1061-7	85.163	56.582			NaN	NaN	NaN	0	0	Median	30309000	0	30309000	2224	463	2090	4347;4348	8999;9000;9001	8999		3	9606
QNEDIEPTSSR	0	1	Unmodified	1274.5739	0.57387302	517	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	5	0					1	12.67	12.67	2	0.025442	3276	DP1061-10	77.192	27.477			NaN	NaN	NaN	0	0	Median	2176300	0	2176300	2225	517	2091	4349	9002	9002		1	9606
QNQTTSAVSTPASSETSK	1	0	Unmodified	1822.8545	0.85446456	199	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	1	0	1					12.691	12.691	2	1.8494E-07	2359	DP1061-6	137.93	88.954			NaN	NaN	NaN	0	0	Median	0	0	0	2226	199	2092	4350	9003	9003		1	9606
QPAPGGGGGGGPSPCGPGGGGR	0	1	Unmodified	1789.7914	0.79142757	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1.5	0.5	1	1				13.048	13.048	2	7.2902E-08	3355	DP1061-7	133.47	108.63			NaN	NaN	NaN	0	0	Median	5020700	0	5020700	2227	497	2093	4351;4352	9004;9005;9006;9007;9008	9008		5	9606
QPYAVSELAGHQTSAESWGTGR	0	1	Unmodified	2331.088	0.087986745	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				2		17.484	17.484	2;3	4.936999999999999E-87	8931	DP1061-9	292.76	250.94			NaN	NaN	NaN	0	0	Median	276970000	0	276970000	2228	162	2094	4353;4354	9009;9010;9011;9012;9013	9011		5	9606
QQEQADSLER	0	1	Unmodified	1202.5527	0.55274365	346	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.596	12.596	2	0.034028	2280	DP1061-6	75.387	27.428			NaN	NaN	NaN	0	0	Median	4144900	0	4144900	2229	346	2095	4355	9014	9014		1	9606
QQINEMHLLIQQAR	0	1	Unmodified	1720.9043	0.90427248	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				17.71	17.71	3	0.0079691	9274	DP1061-7	77.185	46.701			NaN	NaN	NaN	0	0	Median	9139600	0	9139600	2230	284	2096	4356	9015	9015		1	9606
QQLPEQPFEK	1	0	Unmodified	1242.6245	0.62445203	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				15.921	15.921	2	0.0052377	6953	DP1061-7	83.647	64.553			13.86	14.522	NaN	1	0	Median	22858000	1832300	21026000	2231	184	2097	4357	9016	9016		1	9606
QQQAAPNLR	0	1	Unmodified	1024.5414	0.5413911	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	1	1		1			12.569	12.569	2	0.01402	2156	DP1061-6	91.041	30.605			NaN	NaN	NaN	0	0	Median	22932000	0	22932000	2232	341	2098	4358;4359	9017;9018;9019	9017		3	9606
QQQEEEDLNLEDRGEETVLGGGTR	0	2	Unmodified	2701.2427	0.24270907	378	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3	0			1			17.786	17.786	3	0.003039	8585	DP1061-8	76.329	51.781			NaN	NaN	NaN	0	0	Median	15359000	0	15359000	2233	378	2099	4360	9020;9021	9020		2	9606
QQQEELEAEHGTGDKPAAPR	1	1	Unmodified	2190.0301	0.030137515	329	Q13895	BYSL	Bystin	yes	yes	0	0	1	4	0				1		12.712	12.712	4	0.020177	2931	DP1061-9	67.645	45.105			NaN	NaN	NaN	0	0	Median	22715000	0	22715000	2234	329	2100	4361	9022	9022		1	9606
QQSAQSQVSTTAENK	1	0	Unmodified	1605.7594	0.75944196	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2.5	0.5		1	1			12.439	12.439	2	1.3676E-35	2533	DP1061-7	251.75	165.56			NaN	NaN	NaN	0	0	Median	29312000	0	29312000	2235	485	2101	4362;4363	9023;9024;9025	9023		3	9606
QQTQHAVEGDCDIHVLK	1	0	Unmodified	1976.9374	0.9374231	16	CON__P12763			yes	yes	0	0	0	3	0			1			14.049	14.049	4	0.040165	4811	DP1061-8	53.565	36.715		+	NaN	NaN	NaN	0	0	Median	10950000	10950000	0	2236	16	2102	4364	9026	9026		1	
QSFEVLKR	1	1	Unmodified	1005.5607	0.56072956	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				14.271	14.271	2	0.009217	4789	DP1061-7	124.59	65.613			NaN	NaN	NaN	0	0	Median	108320000	0	108320000	2237	339	2103	4365	9027	9027		1	9606
QSGEAFVELGSEDDVK	1	0	Unmodified	1708.7792	0.77917435	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		17.947	17.947	2	7.071E-15	9493	DP1061-9	197.38	148.32			NaN	NaN	NaN	0	0	Median	24382000	0	24382000	2238	213	2104	4366	9028;9029;9030	9029		3	9606
QSILNSLSR	0	1	Unmodified	1016.5615	0.56145784	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				16.935	16.935	2	1.2949E-09	8133	DP1061-7	146.69	89.646			8.402	9.3055	NaN	1	0	Median	29292000	3648400	25644000	2239	485	2105	4367	9031;9032	9031		2	9606
QSLEASLAETEGR	0	1	Unmodified	1389.6736	0.67358707	17	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.33	1.25	1	1		1		17.045	17.045	2	2.3369E-05	8324	DP1061-9	135.99	102.76		+	NaN	NaN	NaN	0	0	Median	92650000	92650000	0	2240	17	2106	4368;4369;4370	9033;9034;9035;9036;9037;9038	9038		6	9606
QSNVAAPGDATPPAEK	1	0	Unmodified	1551.7529	0.75290002	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2.5	0.5		1	1			13.463	13.463	2	8.81E-09	3793	DP1061-7	177.36	143.15			NaN	NaN	NaN	0	0	Median	7257600	0	7257600	2241	454	2107	4371;4372	9039;9040;9041	9040		3	9606
QSNVAAPGDATPPAEKK	2	0	Unmodified	1679.8479	0.84786304	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				12.459	12.459	3	0.010071	2576	DP1061-7	70.802	28.485			NaN	NaN	NaN	0	0	Median	10920000	0	10920000	2242	454	2108	4373	9042;9043	9042		2	9606
QSQQEAEEEEREEEEEAQIIQR	0	2	Unmodified	2716.206	0.20598921	507	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3.5	0.5			1	1		17.187	17.187	3	6.7159E-08	7932	DP1061-8	128.72	112.34			NaN	NaN	NaN	0	0	Median	21459000	0	21459000	2243	507	2109	4374;4375	9044;9045;9046;9047;9048;9049;9050	9047		7	9606
QSSGASSSSFSSSR	0	1	Unmodified	1360.5855	0.58550034	32	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			12.442	12.442	2	6.2732E-05	2774	DP1061-8	148.78	112.88			NaN	NaN	NaN	0	0	Median	6025200	0	6025200	2244	32	2110	4376	9051;9052	9051		2	9606
QSVEADINGLR	0	1	Unmodified	1200.6099	0.6098646	17	CON__P13645;P13645;CON__P02535-1;CON__P08730-1;P13646;CON__ENSEMBL:ENSP00000377550;Q2M2I5;CON__Q2M2I5;CON__P13646-1	KRT10;KRT13;KRT24	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 24	yes	no	0	0	0	1	0	1					16.746	16.746	2	0.0031536	6722	DP1061-6	108.57	68.525		+	NaN	NaN	NaN	0	0	Median	19686000	19686000	0	2245	17	2111	4377	9053;9054	9053		2	9606
QSVEADINGLRR	0	2	Unmodified	1356.711	0.71097563	17	CON__P13645;P13645;CON__P02535-1;CON__P08730-1;P13646;CON__ENSEMBL:ENSP00000377550;CON__P13646-1	KRT10;KRT13	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13	yes	no	0	0	1	2	0.816	1	1	1			15.74	15.74	2;3	0.0053114	5307	DP1061-6	157.97	96.207		+	NaN	NaN	NaN	0	0	Median	71472000	71472000	0	2246	17	2112	4378;4379;4380	9055;9056;9057;9058;9059	9056		5	9606
QTATQLLK	1	0	Unmodified	901.52328	0.52328142	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4.67	0.471				1	2	14.325	14.325	2	1.3033E-05	4479	DP1061-9	153.04	73.585			29.972	29.737	NaN	1	0	Median	149670000	3682900	145980000	2247	242	2113	4381;4382;4383	9060;9061;9062;9063;9064;9065	9065		6	9606
QTLLFSATFR	0	1	Unmodified	1182.6397	0.63970816	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				19.924	19.924	2	0.047962	11750	DP1061-7	84.213	42.764			NaN	NaN	NaN	0	0	Median	0	0	0	2248	402	2114	4384	9066	9066		1	9606
QTLMWSATWPK	1	0	Oxidation (M)	1363.6595	0.65945733	130;440	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	1	0	3	0			1			19.508	19.508	2	0.0031298	10671	DP1061-8	104.43	72.563			NaN	NaN	NaN	0	0	Median	31977000	0	31977000	2249	130;440	2115	4385	9067;9068	9068	176	2	9606
QTLMWSATWPK	1	0	Unmodified	1347.6645	0.66454271	130;440	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3	0			1			20.401	20.401	2	0.0036584	11826	DP1061-8	105.98	67.889			NaN	NaN	NaN	0	0	Median	8038400	0	8038400	2250	130;440	2115	4386	9069;9070	9070		2	9606
QTPAPAASVTGSR	0	1	Unmodified	1241.6364	0.6364137	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					13.094	13.094	2	0.0024828	2688	DP1061-6	99.343	59.276			NaN	NaN	NaN	0	0	Median	6591500	0	6591500	2251	182	2116	4387	9071	9071		1	9606
QTPNDLTGEHSCIMLK	1	0	Unmodified	1842.8604	0.86041834	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				16.192	16.192	3	0.00063919	7236	DP1061-7	97.45	61.421			NaN	NaN	NaN	0	0	Median	9596200	0	9596200	2252	485	2117	4388	9072;9073	9073		2	9606
QTQTFTTYSDNQPGVLIQVYEGER	0	1	Unmodified	2773.3195	0.31950282	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			21.067	21.067	2	7.6011E-18	12620	DP1061-8	152.94	118.02			NaN	NaN	NaN	0	0	Median	7667900	0	7667900	2253	113	2118	4389	9074;9075;9076;9077	9074		4	9606
QTTTGSAVPIR	0	1	Unmodified	1129.6091	0.60913632	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.446	13.446	2	0.0016799	3125	DP1061-6	104.01	104.01			0.91376	1.0324	NaN	1	0	Median	21047000	11111000	9935400	2254	34	2119	4390	9078;9079;9080;9081	9079		4	9606
QTVAVGVIK	1	0	Unmodified	913.55967	0.55966693	263	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	0				1		14.848	14.848	2	0.024723	5579	DP1061-9	74.301	15.705			2.2114	2.3116	NaN	1	0	Median	39116000	12305000	26811000	2255	263	2120	4391	9082;9083	9082		2	9606
QTVEADVNGLRR	0	2	Unmodified	1356.711	0.71097563	15	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	1	3	0			1			15.992	15.992	3	0.046744	6744	DP1061-8	34.96	2.4369		+	NaN	NaN	NaN	0	0	Median	12392000	12392000	0	2256	15	2121	4392	9084	9084		1	9606
QTVMFSATFPR	0	1	Oxidation (M)	1299.6282	0.6281572	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	2	0		1				18.475	18.475	2	0.053147	9925	DP1061-7	66.19	28.641			NaN	NaN	NaN	0	0	Median	0	0	0	2257	396	2122	4393	9085	9085		1	9606
QTYSTEPNNLK	1	0	Unmodified	1293.6201	0.62009493	187	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	5	0					4	13.591	13.591	2	1.7569E-06	4857	DP1061-10	131.62	108.09			13.792	13.684	NaN	1	0	Median	34332000	2810100	31522000	2258	187	2123	4394;4395;4396;4397	9086;9087;9088;9089;9090;9091;9092;9093;9094;9095	9091		10	9606
QVEELFER	0	1	Unmodified	1048.5189	0.51892433	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				16.966	16.966	2	0.0097085	8206	DP1061-7	108.46	69.669			NaN	NaN	NaN	0	0	Median	12781000	0	12781000	2259	269	2124	4398	9096;9097	9097		2	9606
QVFFELNGQLR	0	1	Unmodified	1349.7092	0.70918471	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				19.986	19.986	2	2.3625E-07	11814	DP1061-7	141.52	112.36			1.0039	1.1068	NaN	1	0	Median	34335000	16390000	17946000	2260	116	2125	4399	9098;9099;9100;9101;9102	9100		5	9606
QVGYENAGTVEFLVDR	0	1	Unmodified	1795.8741	0.87407779	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.16	0.488		17	1	1		22.247	22.247	2;3	2.894E-128	11868	DP1061-7	284.12	244.1			0.98637	1.0545	15.988	8	0	Median	684900000	348700000	336200000	2261	116	2126	4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418	9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123;9124;9125;9126;9127;9128;9129;9130;9131;9132;9133;9134;9135;9136;9137;9138	9106		35	9606
QVHPDTGISSK	1	0	Unmodified	1167.5884	0.58840088	57;96	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q16778;P33778;P23527;P06899;Q8N257	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	no	no	0	0	0	5	0					3	14.187	14.187	2	3.3717000000000004E-33	2875	DP1061-10	192.64	135.92			11.048	10.962	NaN	1	0	Median	163090000	11068000	152020000	2262	57;96	2127	4419;4420;4421	9139;9140;9141;9142;9143;9144;9145;9146;9147;9148	9139		10	9606
QVIGTGSFFPK	1	0	Unmodified	1179.6288	0.62880913	324	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		18.612	18.612	2	0.012436	10504	DP1061-9	72.879	72.879			1.3633	1.4251	NaN	1	0	Median	11091000	6443500	4647700	2263	324	2128	4422	9149	9149		1	9606
QVLDNLTMEK	1	0	Oxidation (M)	1205.5962	0.59618837	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	1	0	1					15.762	15.762	2	0.00030641	5429	DP1061-6	123.86	91.113		+	NaN	NaN	NaN	0	0	Median	68934000	68934000	0	2264	19	2129	4423	9150;9151	9151	13	2	9606
QVLEPSFR	0	1	Unmodified	974.51853	0.5185304	147	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		16.177	16.177	2	0.028532	7194	DP1061-9	80.229	35.508			NaN	NaN	NaN	0	0	Median	7614700	0	7614700	2265	147	2130	4424	9152;9153	9153		2	9606
QVLIASHLPSYELR	0	1	Unmodified	1624.8937	0.89369102	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.25	0.75	28	2		2		27.175	27.175	2;3	1.1291999999999999E-36	12606	DP1061-6	169.21	169.21			0.79421	0.86251	9.5705	16	0	Median	936700000	501070000	435630000	2266	309	2131	4425;4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456	9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172;9173;9174;9175;9176;9177;9178;9179;9180;9181;9182;9183;9184;9185;9186;9187;9188;9189;9190;9191;9192;9193;9194;9195;9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206;9207;9208;9209;9210;9211;9212;9213;9214;9215;9216;9217;9218	9174		64	9606
QVLNSYEVLGEEFDR	0	1	Unmodified	1796.8581	0.85809337	494	Q9H6D7	HAUS4	HAUS augmin-like complex subunit 4	yes	yes	0	0	0	2	0		1				21.068	21.068	2	0.0018935	13158	DP1061-7	82.417	49.328			0.96562	1.07	NaN	1	0	Median	28813000	13631000	15182000	2267	494	2132	4457	9219;9220	9220		2	9606
QVNYEVDRR	0	2	Unmodified	1177.584	0.5839842	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.63	12.63	2	2.1798E-30	2248	DP1061-6	176.44	136.78			0.86588	0.92298	NaN	1	0	Median	217780000	118110000	99676000	2268	309	2133	4458	9221;9222;9223;9224	9224		4	9606
QVPNESFFNFFNPLK	1	0	Unmodified	1826.8992	0.89917033	460	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			23.972	23.972	2	5.1409E-06	16175	DP1061-8	132.32	95.906			NaN	NaN	NaN	0	0	Median	3949700	0	3949700	2269	460	2134	4459	9225;9226;9227	9225		3	9606
QVQAEVPGSPIFVMR	0	1	Oxidation (M)	1672.8607	0.86067633	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.14	0.99	2	3	1	1		19.657	19.657	2;3	2.5007E-19	9754	DP1061-6	166.29	166.29			0.75526	0.77672	7.4894	4	0	Median	675110000	389560000	285550000	2270	309	2135	4460;4461;4462;4463;4464;4465;4466	9228;9229;9230;9231;9232;9233;9234;9235;9236;9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249	9234	406	22	9606
QVQAEVPGSPIFVMR	0	1	Unmodified	1656.8658	0.86576171	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	0.957	1	2	2	1		19.897	19.897	2	1.5993E-17	11673	DP1061-7	212.09	138.11			0.70152	0.75003	NaN	1	0	Median	74212000	46988000	27224000	2271	309	2135	4467;4468;4469;4470;4471;4472	9250;9251;9252;9253;9254;9255;9256;9257;9258;9259	9253		10	9606
QVQQLLGK	1	0	Unmodified	912.53927	0.53926584	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0.816	1	1	1			14.414	14.414	2	0.00011309	5180	DP1061-8	135.87	101.86			NaN	NaN	NaN	0	0	Median	127700000	0	127700000	2272	555	2136	4473;4474;4475	9260;9261;9262;9263;9264	9263		5	9606
QVQSEIPGSPIFLMK	1	0	Oxidation (M)	1688.8807	0.88074307	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.418	19.418	2	0.018907	9788	DP1061-6	74.944	6.0511			NaN	NaN	NaN	0	0	Median	0	0	0	2273	34	2137	4476	9265	9265	37	1	9606
QVSDLISVLR	0	1	Unmodified	1128.6503	0.65027285	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3.5	0.5			1	1		19.974	19.974	2	0.002522	11159	DP1061-8	114.89	57.847			NaN	NaN	NaN	0	0	Median	67175000	0	67175000	2274	130	2138	4477;4478	9266;9267;9268;9269	9267		4	9606
QVTITGSAASISLAQYLINAR	0	1	Unmodified	2176.1852	0.18518159	353	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		22.885	22.885	2	2.2482E-12	15748	DP1061-9	157.38	133.11			NaN	NaN	NaN	0	0	Median	2833200	0	2833200	2275	353	2139	4479	9270	9270		1	9606
QVVNIPSFIVR	0	1	Unmodified	1270.7398	0.73975656	188	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	25.43	25.43	2	0.0040335	13965	DP1061-10	103.7	78.925			NaN	NaN	NaN	0	0	Median	50308000	0	50308000	2276	188	2140	4480	9271;9272	9271		2	9606
QYQIVER	0	1	Unmodified	934.48723	0.48723027	36	O14646;O14647	CHD1;CHD2	Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 2	yes	no	0	0	0	1	0	1					14.22	14.22	2	0.038059	4001	DP1061-6	77.282	30.912			NaN	NaN	NaN	0	0	Median	4982000	0	4982000	2277	36	2141	4481	9273	9273		1	9606
RAMGEQAVALAR	0	2	Oxidation (M)	1287.6718	0.67175335	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3.33	0.471			2	1		12.854	12.854	2;3	0.00131	3241	DP1061-8	81.431	58.34			0.96158	1.0339	1.4085	3	0	Plateau	213690000	108070000	105620000	2278	86	2142	4482;4483;4484	9274;9275;9276;9277;9278;9279;9280;9281;9282	9277	90	9	9606
RAMGEQAVALAR	0	2	Unmodified	1271.6768	0.67683873	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			14.128	14.128	3	0.014078	4901	DP1061-8	64.224	33.401			NaN	NaN	NaN	0	0	Median	13716000	0	13716000	2279	86	2142	4485	9283;9284	9284		2	9606
RAYDIAGSTK	1	1	Unmodified	1080.5564	0.55637247	115	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	1	0	1					12.545	12.545	2	0.030074	2177	DP1061-6	99.788	43.241			NaN	NaN	NaN	0	0	Median	3492000	0	3492000	2280	115	2143	4486	9285	9285		1	9606
RAYIAYELNSVQHR	0	2	Unmodified	1718.8853	0.8852516	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.09	0.287	10	1				19.556	19.556	3	6.9497E-77	5677	DP1061-6	236.42	180.52			0.87452	0.90321	22.61	3	0	Median	137750000	72873000	64880000	2281	309	2144	4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497	9286;9287;9288;9289;9290;9291;9292;9293;9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305;9306;9307;9308	9286		23	9606
RFDDAVVQSDMK	1	1	Oxidation (M)	1425.6558	0.65582851	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			13.875	13.875	2	0.00077846	4587	DP1061-8	107.09	75.806			NaN	NaN	NaN	0	0	Median	24897000	0	24897000	2282	113	2145	4498	9309;9310	9310	140	2	9606
RFEKPLEEK	2	1	Unmodified	1174.6346	0.63462279	418	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	2	3	0			1			12.44	12.44	3	0.047723	2749	DP1061-8	76.943	34.225			NaN	NaN	NaN	0	0	Median	0	0	0	2283	418	2146	4499	9311	9311		1	9606
RFPGYDSESK	1	1	Unmodified	1184.5462	0.54620171	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	4	0				1		13.503	13.503	2	0.025859	3859	DP1061-9	98.044	98.044			22.456	23.053	NaN	1	0	Median	40385000	2309400	38076000	2284	185	2147	4500	9312;9313	9312		2	9606
RFPGYDSESKEFNAEVHR	1	2	Unmodified	2167.0083	0.0082798605	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	2	4	0				1		15.671	15.671	4	0.039939	6598	DP1061-9	57.525	33.472			NaN	NaN	NaN	0	0	Median	7868000	0	7868000	2285	185	2148	4501	9314	9314		1	9606
RFSQVLSALGLDEEQLLSEAGK	1	1	Unmodified	2389.2489	0.24890406	367	Q3SY00	TSGA10IP	Testis-specific protein 10-interacting protein	yes	yes	0	0	1	2	0		1				17.766	17.766	3	0.043325	9403	DP1061-7	41.711	6.6672			NaN	NaN	NaN	0	0	Median	20499000	0	20499000	2286	367	2149	4502	9315	9315		1	9606
RGPCIIYNEDNGIIK	1	1	Unmodified	1760.888	0.88795372	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		16.855	16.855	2;3	0.0014674	8063	DP1061-9	108.68	68.669			NaN	NaN	NaN	0	0	Median	94346000	0	94346000	2287	162	2150	4503;4504	9316;9317;9318;9319	9319		4	9606
RHWGGNVLGPK	1	1	Unmodified	1219.6574	0.65742391	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		13.976	13.976	3	0.054255	4670	DP1061-9	40.154	7.0657			NaN	NaN	NaN	0	0	Median	7790700	0	7790700	2288	242	2151	4505	9320	9320		1	9606
RIGYPVMIK	1	1	Oxidation (M)	1091.6161	0.61613595	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0			1			15.088	15.088	2	0.0303	6120	DP1061-8	62.464	31.235			0.86064	0.89623	NaN	1	0	Median	73696000	38847000	34848000	2289	455	2152	4506	9321;9322;9323	9323		3	9606
RILNVPQELYEK	1	1	Unmodified	1500.83	0.83002813	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.206	17.206	2	0.039007	7312	DP1061-6	82.171	33.173			NaN	NaN	NaN	0	0	Median	0	0	0	2290	309	2153	4507	9324	9324		1	9606
RIPVQAVWAGWGHASENPK	1	1	Unmodified	2102.081	0.080991294	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	2.33	1.25	1	1		1		19.629	19.629	3	3.1675E-24	9642	DP1061-7	157.84	137.79			0.76647	0.81604	13.346	3	0	Plateau	51695000	28753000	22942000	2291	309;34	2154	4508;4509;4510	9325;9326;9327;9328	9327		3	9606
RISEQFTAMFR	0	2	Oxidation (M)	1400.6871	0.68706906	265;98;328;81;320	P07437;P68371;Q9BVA1;Q13885;Q13509;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-4A chain	no	no	0	1	1	4	0				1		16.492	16.492	3	0.035962	7624	DP1061-9	60.49	38.858			NaN	NaN	NaN	0	0	Median	13915000	0	13915000	2292	98;265;328;320;81	2155	4511	9329;9330	9330	83	2	9606
RKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	2	1	Unmodified	3338.683	0.68299332	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			19.34	19.34	4	0.00035047	10516	DP1061-8	61.03	38.851			NaN	NaN	NaN	0	0	Median	9768500	0	9768500	2293	108	2156	4512	9331	9331		1	9606
RLEEEEAAAEKEDR	1	2	Unmodified	1673.7857	0.78565671	377	Q5T280	C9orf114	Putative methyltransferase C9orf114	yes	yes	0	0	2	4	0				1		12.832	12.832	3	0.0017098	3197	DP1061-9	100.68	71.466			NaN	NaN	NaN	0	0	Median	3041700	0	3041700	2294	377	2157	4513	9332	9332		1	9606
RLEIEHSVPK	1	1	Unmodified	1206.6721	0.67207093	523	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	1	3	0			1			13.115	13.115	3	0.0080648	3556	DP1061-8	73.632	20.394			NaN	NaN	NaN	0	0	Median	16182000	0	16182000	2295	523	2158	4514	9333;9334	9334		2	9606
RLLLEDLVK	1	1	Unmodified	1097.6808	0.6808447	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.33	1.25	1	1		1		18.767	18.767	2	0.0028934	10212	DP1061-7	123.72	123.72			0.88551	0.90904	5.2982	3	0	Median	54976000	26893000	28083000	2296	309	2159	4515;4516;4517	9335;9336;9337	9336		3	9606
RLNISYTR	0	2	Unmodified	1021.5669	0.56687757	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			13.96	13.96	2	0.020303	4731	DP1061-8	106.68	67.661			0.8986	0.95514	NaN	1	0	Median	832870000	436940000	395930000	2297	455	2160	4518	9338;9339	9338		2	9606
RLPDAHSDYAR	0	2	Unmodified	1299.632	0.63199703	453	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	3.5	0.5			1	1		12.529	12.529	3	0.0018069	2915	DP1061-8	73.9	44.997			1.1123	1.1398	33.11	2	0	Median	48177000	20229000	27948000	2298	453	2161	4519;4520	9340;9341;9342;9343	9341		4	9606
RLTEQKGEQQIQK	2	1	Unmodified	1584.8584	0.85836815	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	2	1	0	1					12.409	12.409	3	0.026731	2006	DP1061-6	75.911	42.903			NaN	NaN	NaN	0	0	Median	4618500	0	4618500	2299	559	2162	4521	9344	9344		1	9606
RLTFLVAQK	1	1	Unmodified	1074.655	0.6549643	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				17.547	17.547	2	0.0096387	7088	DP1061-7	113.26	40.466			0.82861	0.89522	3.5535	2	0	Median	317630000	174830000	142800000	2300	309	2163	4522;4523;4524	9345;9346;9347;9348	9348		4	9606
RLVVHCEQLDAQNQQR	0	2	Unmodified	1992.9912	0.99119001	54	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	1	1	0	1					13.817	13.817	3	0.0080059	3569	DP1061-6	79.771	54.213			NaN	NaN	NaN	0	0	Median	0	0	0	2301	54	2164	4525	9349	9349		1	9606
RPAEDMEEEQAFKR	1	2	Oxidation (M)	1750.7944	0.79444726	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3	0			1			12.811	12.811	3	0.015017	3174	DP1061-8	99.055	71.403			NaN	NaN	NaN	0	0	Median	59501000	0	59501000	2302	232	2165	4526	9350	9350	296	1	9606
RPAEDMEEEQAFKR	1	2	Unmodified	1734.7995	0.79953264	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	2	3	0			1			13.802	13.802	3	0.0019628	4441	DP1061-8	99.069	64.032			NaN	NaN	NaN	0	0	Median	24513000	0	24513000	2303	232	2165	4527	9351;9352;9353	9352		3	9606
RPEIVVATPGR	0	2	Unmodified	1193.6881	0.68805534	484	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	1	2	0		1				14.261	14.261	2	0.02252	4868	DP1061-7	97.813	74.045			NaN	NaN	NaN	0	0	Median	11428000	0	11428000	2304	484	2166	4528	9354	9354		1	9606
RPELLTHSTTEVTQPR	0	2	Unmodified	1863.9803	0.9802742	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		2				14.281	14.281	3;4	2.4013E-14	4858	DP1061-7	148.18	148.18			1.057	1.0917	13.677	2	0	Median	83231000	39011000	44219000	2305	269	2167	4529;4530	9355;9356;9357;9358;9359;9360	9355		6	9606
RPGAALDPGCVLAK	1	1	Unmodified	1423.7606	0.76056836	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.22	0.416	7	2				17.203	17.203	2;3	0.00023752	5368	DP1061-6	87.863	64.72			0.6926	0.75217	6.0556	8	0	Median	799430000	453910000	345520000	2306	309	2168	4531;4532;4533;4534;4535;4536;4537;4538;4539	9361;9362;9363;9364;9365;9366;9367;9368;9369;9370;9371;9372;9373;9374;9375;9376;9377;9378;9379;9380;9381;9382;9383;9384	9367		21	9606
RPGAVLEAGCVVAR	0	2	Unmodified	1453.7824	0.78236643	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.204	15.204	3	0.010804	4960	DP1061-6	73.386	32.144			NaN	NaN	NaN	0	0	Median	0	0	0	2307	34	2169	4540	9385	9385		1	9606
RPIVGLGGGK	1	1	Unmodified	952.5818	0.58179936	325	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	1	4	0				1		13.092	13.092	2	0.034283	3370	DP1061-9	89.698	32.521			1.0308	1.0582	NaN	1	0	Median	35092000	17503000	17589000	2308	325	2170	4541	9386	9386		1	9606
RPLEMEQQQAYRPEMK	1	2	2 Oxidation (M)	2064.9721	0.97209405	472	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	2	2	2	0		1				12.756	12.756	3	3.6416E-05	2960	DP1061-7	110.6	71.17			NaN	NaN	NaN	0	0	Median	9696900	0	9696900	2309	472	2171	4542	9387;9388	9388	569;570	2	9606
RPQYSNPPVQGEVMEGADNQGAGEQGR	0	2	Oxidation (M)	2886.2951	0.29509576	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	1	4	0				1		14.626	14.626	3	1.5321E-27	5245	DP1061-9	166.78	146.75			NaN	NaN	NaN	0	0	Median	31185000	0	31185000	2310	262	2172	4543	9389;9390;9391;9392	9389	319	4	9606
RPQYSNPPVQGEVMEGADNQGAGEQGR	0	2	Unmodified	2870.3002	0.30018114	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		15.527	15.527	3	2.6627E-28	6406	DP1061-9	175.79	159.62			NaN	NaN	NaN	0	0	Median	9151200	0	9151200	2311	262	2172	4544	9393;9394;9395;9396	9394		4	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Oxidation (M)	3238.5174	0.51738456	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	4	0				1		14.419	14.419	3	0.051516	4990	DP1061-9	60.207	40.882			NaN	NaN	NaN	0	0	Median	41426000	0	41426000	2312	262	2173	4545	9397;9398	9398	319	2	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Unmodified	3222.5225	0.52246994	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	2	4	0				2		15.214	15.214	3;4	1.12E-14	6068	DP1061-9	143.63	117.13			NaN	NaN	NaN	0	0	Median	90970000	0	90970000	2313	262	2173	4546;4547	9399;9400;9401;9402;9403;9404;9405	9404		7	9606
RPTDYFAEMAK	1	1	Oxidation (M)	1343.618	0.61798644	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	1	1	4	0				1		14.682	14.682	2	0.022843	5342	DP1061-9	65.5	35.757			NaN	NaN	NaN	0	0	Median	22379000	0	22379000	2314	462	2174	4548	9406	9406	556	1	9606
RPVHLDQAAFR	0	2	Unmodified	1308.7051	0.70510239	487	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	1	2	0		1				14.101	14.101	3	0.0026707	4570	DP1061-7	85.845	51.975			NaN	NaN	NaN	0	0	Median	15278000	0	15278000	2315	487	2175	4549	9407;9408	9408		2	9606
RREEEGLQLR	0	3	Unmodified	1284.6898	0.68984626	211	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	2	3	0			1			12.814	12.814	3	0.0062051	3278	DP1061-8	96.113	0			20.848	22.126	NaN	1	0	Median	29809000	1817900	27991000	2316	211	2176	4550	9409	9409		1	9606
RTAQEVETYR	0	2	Unmodified	1251.6208	0.62076364	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			1			12.536	12.536	2	0.022213	2861	DP1061-8	107.11	46.524			NaN	NaN	NaN	0	0	Median	29745000	0	29745000	2317	130	2177	4551	9410	9410		1	9606
RVDPVYIHLAER	0	2	Unmodified	1466.7994	0.7993967	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.41	0.828	21	2	3	1		28.811	28.811	2;3	5.5031E-05	12291	DP1061-6	113.53	113.53			0.77834	0.82732	9.0962	19	0	Median	859130000	473980000	385150000	2318	309	2178	4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567;4568;4569;4570;4571;4572;4573;4574;4575;4576;4577;4578	9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451;9452;9453;9454;9455;9456;9457;9458;9459;9460;9461;9462;9463;9464;9465;9466	9418		50	9606
RVENSIPAAGETQNVEVAAGPAGK	1	1	Unmodified	2364.2034	0.20335085	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	2	0		1				15.602	15.602	3	2.4637E-05	6425	DP1061-7	110.94	61.289			NaN	NaN	NaN	0	0	Median	18048000	0	18048000	2319	347	2179	4579	9467;9468	9468		2	9606
RVSALNSVHCEHVEDEGESR	0	2	Unmodified	2309.0455	0.045470003	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				13.393	13.393	4	7.3006E-07	3053	DP1061-6	87.156	64.51			0.84314	0.88466	14.474	2	0	Median	52667000	29080000	23587000	2320	309	2180	4580;4581	9469;9470;9471;9472;9473;9474;9475;9476;9477	9471		9	9606
RYEEELEINDFPQTAR	0	2	Unmodified	2008.949	0.94903365	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	2	0		1				17.85	17.85	3	1.3013E-05	9434	DP1061-7	114.27	73.418			NaN	NaN	NaN	0	0	Median	7841800	0	7841800	2321	396	2181	4582	9478;9479	9478		2	9606
SAALPIFSSFVSNWDEATK	1	0	Unmodified	2069.0106	0.010571271	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			24.393	24.393	2	0.00012298	16786	DP1061-8	115.12	64.219			NaN	NaN	NaN	0	0	Median	1692500	0	1692500	2322	69	2182	4583	9480	9480		1	9606
SAALPIFSSFVSNWDEATKR	1	1	Unmodified	2225.1117	0.1116823	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			22.993	22.993	3	4.6583E-05	15088	DP1061-8	109.71	60.363			NaN	NaN	NaN	0	0	Median	2953800	0	2953800	2323	69	2183	4584	9481;9482;9483	9481		3	9606
SAAQAAAQTNSNAAGK	1	0	Unmodified	1459.7015	0.70153315	418	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	3.5	0.5			1	1		12.403	12.403	2	4.9999E-08	2606	DP1061-9	165.35	102.72			NaN	NaN	NaN	0	0	Median	18203000	0	18203000	2324	418	2184	4585;4586	9484;9485	9485		2	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term)	1267.6496	0.64956134	187	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	5	0					1	25.107	25.107	2	0.026174	13542	DP1061-10	59.8	38.853			NaN	NaN	NaN	0	0	Median	13893000	0	13893000	2325	187	2185	4587	9486;9487	9487		2	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1283.6445	0.64447597	187	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	1	0	5	0					1	18.361	18.361	2	0.037661	7793	DP1061-10	58.433	18.811			NaN	NaN	NaN	0	0	Median	0	0	0	2326	187	2185	4588	9488	9488		1	9606
SAIKDAEEDDDTGGINLHK	2	0	Unmodified	2026.9443	0.9443422	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	1	2	0		1				14.592	14.592	3	0.0012556	5258	DP1061-7	97.081	52.885			NaN	NaN	NaN	0	0	Median	11883000	0	11883000	2327	313	2186	4589	9489;9490	9490		2	9606
SAINEVVTR	0	1	Unmodified	987.53491	0.53490874	255	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	17.137	17.137	2	0.003746	7189	DP1061-10	115.7	53.117			NaN	NaN	NaN	0	0	Median	9391600	0	9391600	2328	255	2187	4590	9491;9492;9493;9494	9494		4	9606
SAQGSSSPVPSMVQK	1	0	Oxidation (M)	1504.7192	0.71915705	159	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	1	0	1	0	1					12.968	12.968	2	0.0032811	2692	DP1061-6	95.094	50.776			NaN	NaN	NaN	0	0	Median	0	0	0	2329	159	2188	4591	9495	9495	202	1	9606
SASPDDDLGSSNWEAADLGNEER	0	1	Unmodified	2434.0157	0.015669242	25	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	5	0					3	20.915	20.915	2	6.0877E-23	9790	DP1061-10	190.19	167.01			NaN	NaN	NaN	0	0	Median	5205700	0	5205700	2330	25	2189	4592;4593;4594	9496;9497;9498;9499;9500	9496		5	9606
SAVEDEGLK	1	0	Unmodified	946.46074	0.46074075	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			12.852	12.852	2	0.0050943	3262	DP1061-8	93.162	51.935			9.8508	10.522	NaN	1	0	Median	221630000	22166000	199460000	2331	108	2190	4595	9501;9502;9503	9503		3	9606
SCQFSVDEEFQK	1	0	Unmodified	1502.6348	0.63475872	151	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	yes	yes	0	0	0	4	0				1		17.367	17.367	2	0.0098757	8823	DP1061-9	87.568	59.654			NaN	NaN	NaN	0	0	Median	3584000	0	3584000	2332	151	2191	4596	9504;9505	9504		2	9606
SCSGVEFSTSGSSNTDTGK	1	0	Unmodified	1906.7851	0.78506437	181	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		14.623	14.623	2	1.1912E-06	5367	DP1061-9	125.47	96.76			NaN	NaN	NaN	0	0	Median	0	0	0	2333	181	2192	4597	9506	9506		1	9606
SDAAVDTSSEITTK	1	0	Acetyl (Protein N-term)	1465.6784	0.67839767	93	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	1	0	0	5	0					3	16.68	16.68	2	0.0026545	6484	DP1061-10	87.184	41.305			NaN	NaN	NaN	0	0	Median	0	0	0	2334	93	2193	4598;4599;4600	9507;9508;9509	9509		3	9606
SDAGLESDTAMK	1	0	Oxidation (M)	1239.5289	0.52889667	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	1	0	2.67	1.7	1	1			1	12.583	12.583	2	1.3173E-11	2753	DP1061-7	155.11	135.8			23.866	25.005	NaN	1	0	Median	58390000	2164000	56226000	2335	508	2194	4601;4602;4603	9510;9511;9512;9513;9514;9515	9515	609	6	9606
SDAGLESDTAMK	1	0	Unmodified	1223.534	0.53398204	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				14.215	14.215	2	0.0024061	4697	DP1061-7	106.29	72.369			NaN	NaN	NaN	0	0	Median	7593100	0	7593100	2336	508	2194	4604	9516;9517	9516		2	9606
SDGEMVLPGFPDADSFVK	1	0	Oxidation (M)	1925.8717	0.87169453	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	1	0	2	0		1				21.387	21.387	2	0.0017752	13537	DP1061-7	100.22	70.2			NaN	NaN	NaN	0	0	Median	4625800	0	4625800	2337	284	2195	4605	9518	9518	358	1	9606
SDIGEVILVGGMTR	0	1	Oxidation (M)	1461.7497	0.7497289	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	3	0			1			19.142	19.142	2	0.0347	10241	DP1061-8	57.885	31.099			2.0202	2.196	NaN	1	0	Median	20133000	8192500	11941000	2338	166	2196	4606	9519	9519		1	9606
SDKTEEIAEEEETVFPK	2	0	Unmodified	1979.9211	0.92114714	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		2				17.908	17.908	2;3	1.7222000000000002E-62	9484	DP1061-7	269.05	230.81			NaN	NaN	NaN	0	0	Median	68139000	0	68139000	2339	508	2197	4607;4608	9520;9521;9522;9523	9523		4	9606
SDLIDQMNASGPIK	1	0	Oxidation (M)	1503.7239	0.72390808	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				16.052	16.052	2	0.020141	6991	DP1061-7	75.819	15.422			NaN	NaN	NaN	0	0	Median	9636900	0	9636900	2340	512	2198	4609	9524;9525	9524	621	2	9606
SDMNTVLNYIFSHAQVTK	1	0	Oxidation (M)	2083.0044	0.004440036	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				22.547	22.547	3	1.7269E-08	13891	DP1061-6	116.04	103.97			0.79075	0.85574	5.3775	2	0	Median	19867000	9956000	9910900	2341	309	2199	4610;4611	9526;9527;9528;9529	9527	383	4	9606
SDSEDICLFTKDEPNSTPEKTEQFYR	2	1	Unmodified	3135.3979	0.39788908	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			18.02	18.02	3	0.0079109	8849	DP1061-8	66.613	42.701			NaN	NaN	NaN	0	0	Median	5517700	0	5517700	2342	69	2200	4612	9530	9530		1	9606
SDSEKLNLDSIIGR	1	1	Acetyl (Protein N-term)	1587.8104	0.8104149	233	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	1	0	1	4	0				1		20.419	20.419	2	2.1671E-05	12653	DP1061-9	144.1	101.36			NaN	NaN	NaN	0	0	Median	13518000	0	13518000	2343	233	2201	4613	9531;9532;9533;9534	9531		4	9606
SDSSGLTSLKK	2	0	Unmodified	1121.5928	0.59281755	395	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		1				12.591	12.591	2	0.029668	2763	DP1061-7	88.681	43.927			NaN	NaN	NaN	0	0	Median	0	0	0	2344	395	2202	4614	9535	9535		1	9606
SDVEAIFSK	1	0	Unmodified	994.49713	0.49712625	99	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		17.373	17.373	2	6.682E-06	8755	DP1061-9	132.76	100.8			5.8752	6.1414	NaN	1	0	Median	16941000	2669900	14271000	2345	99	2203	4615	9536;9537	9536		2	9606
SDYDGIGSR	0	1	Unmodified	968.41994	0.41993856	32	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			13.98	13.98	2	0.024116	4720	DP1061-8	80.165	56.642			NaN	NaN	NaN	0	0	Median	10667000	0	10667000	2346	32	2204	4616	9538	9538		1	9606
SEDDESGAGELTR	0	1	Unmodified	1364.5692	0.56918158	154	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			2			13.786	13.786	2	0.00038554	4477	DP1061-8	117.02	55.343			NaN	NaN	NaN	0	0	Median	0	0	0	2347	154	2205	4617;4618	9539;9540	9540		2	9606
SEDGTPAEDGTPAATGGSQPPSMGR	0	1	Oxidation (M)	2388.0136	0.013560752	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		2				13.979	13.979	2	1.0957E-05	4491	DP1061-7	100.69	75.145			NaN	NaN	NaN	0	0	Median	0	0	0	2348	466	2206	4619;4620	9541;9542	9542	564	2	9606
SEEELLVIFNK	1	0	Unmodified	1319.6973	0.69728262	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	4	0				1		21.171	21.171	2	0.033532	13786	DP1061-9	74.92	46.715			NaN	NaN	NaN	0	0	Median	4181200	0	4181200	2349	519	2207	4621	9543	9543		1	9606
SEETNTEIVECILK	1	0	Unmodified	1663.7975	0.79746695	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				20.044	20.044	2	0.00011941	11854	DP1061-7	158.05	107.85			NaN	NaN	NaN	0	0	Median	26127000	0	26127000	2350	182	2208	4622;4623	9544;9545	9545		2	9606
SEETNTEIVECILKR	1	1	Unmodified	1819.8986	0.89857798	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				19.108	19.108	3	1.0898E-06	10737	DP1061-7	131.32	107.24			NaN	NaN	NaN	0	0	Median	9488000	0	9488000	2351	182	2209	4624	9546	9546		1	9606
SELLLAEEPGFLEGEDGEDTAK	1	0	Unmodified	2348.0907	0.090731665	40	O15213	WDR46	WD repeat-containing protein 46	yes	yes	0	0	0	3	0			1			21.377	21.377	2	9.0143E-12	13081	DP1061-8	139.58	85.492			NaN	NaN	NaN	0	0	Median	5896500	0	5896500	2352	40	2210	4625	9547;9548	9547		2	9606
SELSQDAEPAGSQETK	1	0	Unmodified	1675.7537	0.75368788	474	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2.67	0.471		1	2			13.465	13.465	2	8.9672E-11	3740	DP1061-7	184.87	140.91			NaN	NaN	NaN	0	0	Median	5950500	0	5950500	2353	474	2211	4626;4627;4628	9549;9550;9551;9552	9549		4	9606
SELVANNVTLPAGEQR	0	1	Unmodified	1696.8744	0.87441214	175	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3.33	0.471			2	1		16.889	16.889	2	0.00010246	8138	DP1061-9	110.31	56.162			NaN	NaN	NaN	0	0	Median	7294000	0	7294000	2354	175	2212	4629;4630;4631	9553;9554;9555;9556;9557	9556		5	9606
SEQEFQEQLESAR	0	1	Unmodified	1579.7114	0.71142914	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.9	0.539	1	1	17	1		21.856	21.856	2	5.6867E-59	8226	DP1061-9	222.18	184.71			0.92316	0.96513	5.2857	5	0	Median	580420000	302040000	278380000	2355	455	2213	4632;4633;4634;4635;4636;4637;4638;4639;4640;4641;4642;4643;4644;4645;4646;4647;4648;4649;4650;4651	9558;9559;9560;9561;9562;9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574;9575;9576;9577;9578;9579;9580;9581;9582;9583;9584;9585;9586;9587;9588;9589;9590;9591;9592;9593;9594;9595	9594		38	9606
SEQEFQEQLESARR	0	2	Unmodified	1735.8125	0.81254017	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		15.923	15.923	2;3	7.2593E-05	6667	DP1061-8	145.46	112.4			0.85947	0.88074	3.8757	2	0	Median	75115000	37033000	38082000	2356	455	2214	4652;4653;4654	9596;9597;9598;9599;9600;9601;9602	9600		7	9606
SEQLEELFSQVGPVK	1	0	Unmodified	1688.8621	0.86211612	516	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	2	0		1				21.178	21.178	2	1.3518E-05	13347	DP1061-7	172.11	99.914			NaN	NaN	NaN	0	0	Median	5363700	0	5363700	2357	516	2215	4655	9603;9604	9603		2	9606
SESHTDLTFSR	0	1	Unmodified	1278.584	0.58404378	41	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	2	0		1				14.089	14.089	2	0.030925	4601	DP1061-7	75.652	43.237			NaN	NaN	NaN	0	0	Median	5608000	0	5608000	2358	41	2216	4656	9605;9606	9606		2	9606
SESPKEPEQLR	1	1	Unmodified	1298.6466	0.64664404	103	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		12.515	12.515	2;3	0.00092368	2688	DP1061-9	160.91	90.501			NaN	NaN	NaN	0	0	Median	151600000	0	151600000	2359	103	2217	4657;4658	9607;9608;9609;9610	9607		4	9606
SETAPAAPAAAPPAEK	1	0	Acetyl (Protein N-term)	1519.7518	0.75183739	125	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	4.75	0.433				1	3	15.738	15.738	2	1.1305E-05	7471	DP1061-9	102.62	10.763			10.246	10.435	10.5	2	0	Median	344350000	25961000	318390000	2360	125	2218	4659;4660;4661;4662	9611;9612;9613;9614;9615;9616;9617;9618;9619;9620;9621	9621		11	9606
SETAPAAPAAAPPAEK	1	0	Unmodified	1477.7413	0.7412727	125	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	4	0				1		13.829	13.829	2	0.00010387	4280	DP1061-9	110.15	8.7702			NaN	NaN	NaN	0	0	Median	6973600	0	6973600	2361	125	2218	4663	9622;9623	9622		2	9606
SETAPAAPAAAPPAEKAPVK	2	0	Acetyl (Protein N-term)	1915.0051	0.005091963	125	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	1	4.8	0.4				1	4	15.227	15.227	2	4.8945E-12	5978	DP1061-10	140.03	117.54			NaN	NaN	NaN	0	0	Median	38569000	0	38569000	2362	125	2219	4664;4665;4666;4667;4668	9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635	9625		12	9606
SETAPAAPAAAPPAEKAPVKK	3	0	Acetyl (Protein N-term)	2043.1001	0.10005498	125	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	2	4.5	0.5				1	1	15.752	15.752	3	0.015348	4368	DP1061-9	59.975	35.688			NaN	NaN	NaN	0	0	Median	12703000	0	12703000	2363	125	2220	4669;4670	9636;9637;9638	9638		3	9606
SETAPAAPAAPAPAEK	1	0	Unmodified	1477.7413	0.7412727	110	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	4	0				1		13.829	13.829	2	0.0096941	4248	DP1061-9	82.85	0			NaN	NaN	NaN	0	0	Median	6973600	0	6973600	2364	110	2221	4671	9639	9639		1	9606
SETAPAAPAAPAPAEKTPVK	2	0	Acetyl (Protein N-term)	1945.0157	0.015656649	110	P10412	HIST1H1E	Histone H1.4	yes	yes	1	0	1	4	0				2		15.102	15.102	2	1.0165E-12	5966	DP1061-9	158.31	121.16			NaN	NaN	NaN	0	0	Median	0	0	0	2365	110	2222	4672;4673	9640;9641	9641		2	9606
SETAPAAPAAPAPAEKTPVKK	3	0	Acetyl (Protein N-term)	2073.1106	0.11061967	110	P10412	HIST1H1E	Histone H1.4	yes	yes	1	0	2	4	0				1		14.03	14.03	3	0.0011387	4410	DP1061-9	93.371	66.05			NaN	NaN	NaN	0	0	Median	8281300	0	8281300	2366	110	2223	4674	9642;9643;9644;9645	9642		4	9606
SETAPLAPTIPAPAEK	1	0	Acetyl (Protein N-term)	1633.8563	0.85630246	124	P16402	HIST1H1D	Histone H1.3	yes	yes	1	0	0	4	0				1		19.612	19.612	2	0.0026637	11751	DP1061-9	79.744	43.216			NaN	NaN	NaN	0	0	Median	10394000	0	10394000	2367	124	2224	4675	9646	9646		1	9606
SEVATLTAAGK	1	0	Unmodified	1046.5608	0.56078914	161	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	5	0					1	14.323	14.323	2	0.010533	4717	DP1061-10	88.496	51.431			NaN	NaN	NaN	0	0	Median	4228200	0	4228200	2368	161	2225	4676	9647	9647		1	9606
SEWNTVER	0	1	Unmodified	1019.4672	0.46722311	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			14.851	14.851	2	0.029642	5753	DP1061-8	78.77	21.489			NaN	NaN	NaN	0	0	Median	7648200	0	7648200	2369	29	2226	4677	9648	9648		1	9606
SEYSSGMEADIAK	1	0	Oxidation (M)	1402.5922	0.5922252	499	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	1	0	3	0			1			13.836	13.836	2	0.012735	4544	DP1061-8	79.659	57.13			NaN	NaN	NaN	0	0	Median	4976900	0	4976900	2370	499	2227	4678	9649;9650	9649	599	2	9606
SFDALNFVTMLK	1	0	Oxidation (M)	1400.701	0.70098779	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	1	0	2	0		1				22.411	22.411	2	0.012595	14804	DP1061-7	82.261	44.752			NaN	NaN	NaN	0	0	Median	2107300	0	2107300	2371	497	2228	4679	9651	9651	598	1	9606
SFDWGYEER	0	1	Unmodified	1187.4884	0.48835248	133	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	4	0				1		18.591	18.591	2	0.010201	10438	DP1061-9	99.442	55.634			NaN	NaN	NaN	0	0	Median	4839500	0	4839500	2372	133	2229	4680	9652;9653	9653		2	9606
SFGLPSIGR	0	1	Unmodified	932.50797	0.50796571	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.647	18.647	2	0.015068	9484	DP1061-8	80.219	30.796			0.90093	0.94269	NaN	1	0	Median	213010000	107020000	105990000	2373	86	2230	4681	9654;9655	9655		2	9606
SFLGLTCLMQISTR	0	1	Oxidation (M)	1641.8218	0.82184798	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	1	0	2	0		1				21.309	21.309	2	0.041535	13514	DP1061-7	70.089	40.282			NaN	NaN	NaN	0	0	Median	5474300	0	5474300	2374	284	2231	4682	9656	9656		1	9606
SFNDDAMLIEK	1	0	Oxidation (M)	1297.586	0.58601761	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		16.983	16.983	2	0.0025947	8232	DP1061-9	89.827	57.609			1.1446	1.2095	17.149	2	0	Median	62927000	27657000	35270000	2375	455	2232	4683;4684	9657;9658;9659;9660;9661	9661	540	5	9606
SFNDDAMLIEK	1	0	Unmodified	1281.5911	0.59110299	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.185	18.185	2	0.0088107	8959	DP1061-8	77.662	60.442			1.0213	1.0909	NaN	1	0	Median	26516000	14780000	11736000	2376	455	2232	4685	9662;9663;9664;9665;9666	9662		5	9606
SFPKDDPSKPVHLTAFLGYK	3	0	Unmodified	2246.1736	0.17355427	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	2	4	0				1		17.723	17.723	4	0.00014785	9150	DP1061-9	106.31	90.418			NaN	NaN	NaN	0	0	Median	27460000	0	27460000	2377	169	2233	4686	9667	9667		1	9606
SFQPDTGR	0	1	Unmodified	906.41954	0.41954463	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		12.763	12.763	2	1.8428E-09	2962	DP1061-7	147.69	114.18			0.8998	0.95761	7.4275	4	0	Median	1255800000	665540000	590260000	2378	116	2234	4687;4688;4689;4690	9668;9669;9670;9671;9672;9673;9674;9675;9676;9677	9673		10	9606
SFQPDTGRIEVFR	0	2	Unmodified	1550.7841	0.78414057	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				17.405	17.405	2;3	5.4681E-08	8884	DP1061-7	127.42	84.142			0.95477	0.98609	0.33051	2	0	Median	179030000	94637000	84390000	2379	116	2235	4691;4692	9678;9679;9680;9681;9682;9683;9684	9684		7	9606
SFYPEEVSSMVLTK	1	0	Oxidation (M)	1631.7753	0.77527495	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			18.836	18.836	2	0.025216	9762	DP1061-8	74.46	44.927			NaN	NaN	NaN	0	0	Median	32230000	0	32230000	2380	113	2236	4693	9685	9685	141	1	9606
SFYPEEVSSMVLTK	1	0	Unmodified	1615.7804	0.78036033	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			20.406	20.406	2	0.00048657	11774	DP1061-8	111.52	81.385			NaN	NaN	NaN	0	0	Median	15511000	0	15511000	2381	113	2236	4694	9686;9687;9688	9687		3	9606
SGASEANLIVAK	1	0	Unmodified	1158.6245	0.62445203	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		15.198	15.198	2	0.0033891	4962	DP1061-6	99.788	60.166			NaN	NaN	NaN	0	0	Median	121120000	0	121120000	2382	182	2237	4695;4696;4697	9689;9690;9691;9692	9690		4	9606
SGDHLHNDSQIEADFR	0	1	Acetyl (Protein N-term)	1881.8242	0.82416748	114	P11387	TOP1	DNA topoisomerase 1	yes	yes	1	0	0	2	0		1				16.371	16.371	3	0.0014285	7485	DP1061-7	85.28	38.316			NaN	NaN	NaN	0	0	Median	8203000	0	8203000	2383	114	2238	4698	9693;9694	9693		2	9606
SGEGMGIR	0	1	Unmodified	805.37524	0.37523698	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				12.712	12.712	2	0.0085258	2949	DP1061-7	110.63	83.496			NaN	NaN	NaN	0	0	Median	13547000	13547000	0	2384	116	2239	4699	9695;9696	9695		2	9606
SGGGGGGGLGSGGSIR	0	1	Unmodified	1231.5905	0.59052614	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3.25	1.48	1		1	1	1	13.018	13.018	2	6.3912E-21	3614	DP1061-10	171.26	171.26		+	0.31284	0.30555	NaN	1	0	Median	115450000	110780000	4669800	2385	19	2240	4700;4701;4702;4703	9697;9698;9699;9700;9701;9702;9703;9704	9698		8	9606
SGGGTGEEPGSQGLNGEAGPEDSTR	0	1	Unmodified	2345.0004	0.0003535287	43	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			2			14.9	14.9	2	2.5322999999999997E-28	5651	DP1061-8	205.12	156.59			NaN	NaN	NaN	0	0	Median	10757000	0	10757000	2386	43	2241	4704;4705	9705;9706;9707;9708;9709	9705		5	9606
SGGSGHAVAEPASPEQELDQNKGK	2	0	Unmodified	2392.1255	0.12549446	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.816	1	1	1			13.62	13.62	3;4	8.5042E-09	4248	DP1061-8	134.58	108.04			NaN	NaN	NaN	0	0	Median	20837000	0	20837000	2387	182	2242	4706;4707;4708	9710;9711;9712;9713;9714	9713		5	9606
SGNELPLAVASTADLIR	0	1	Unmodified	1725.9261	0.92611336	558	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				21.149	21.149	2	4.7579E-07	13231	DP1061-7	122.1	89.057			NaN	NaN	NaN	0	0	Median	5761800	0	5761800	2388	558	2243	4709	9715;9716	9716		2	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	0	Oxidation (M)	3352.5055	0.50548247	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		3				18.081	18.081	3;4	6.07E-24	9363	DP1061-7	119.69	119.69			0.89569	0.93843	6.5838	3	0	Median	811510000	420170000	391340000	2389	116	2244	4710;4711;4712	9717;9718;9719;9720;9721;9722;9723;9724;9725;9726	9721	161	10	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	1	1	Unmodified	2797.3361	0.33609636	265;98;328;81	P07437;P68371;Q9BVA1;Q13885;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain	no	no	0	0	1	3.5	0.5			1	1		21.926	21.926	3	0.0022778	14576	DP1061-9	52.158	52.158			3.7993	3.9003	NaN	1	0	Median	38229000	6894000	31335000	2390	98;265;328;81	2245	4713;4714	9727;9728	9728		2	9606
SGQGAFGNMCR	0	1	Unmodified	1183.4863	0.48626077	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		14.653	14.653	2	0.0039818	5389	DP1061-9	104.01	81.928			NaN	NaN	NaN	0	0	Median	17155000	0	17155000	2391	162	2246	4715	9729;9730	9730		2	9606
SGVDGPHFPLSLSTCLFGR	0	1	Unmodified	2045.9993	0.99929508	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	4	0				1		21.542	21.542	3	7.8978E-05	14176	DP1061-9	111.77	87.288			NaN	NaN	NaN	0	0	Median	10488000	0	10488000	2392	182	2247	4716	9731;9732	9732		2	9606
SGVSDHWALDDHHALHLTR	0	1	Unmodified	2166.0355	0.035497664	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0				1		16.109	16.109	4	0.024976	7125	DP1061-9	44.468	10.374			1.0495	1.1221	NaN	1	0	Median	23003000	11519000	11483000	2393	501	2248	4717	9733;9734	9733		2	9606
SGVSLAALK	1	0	Unmodified	844.50182	0.5018177	125;110;124	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	no	no	0	0	0	4	0				1		16.176	16.176	2	0.021993	7123	DP1061-9	82.452	50.098			NaN	NaN	NaN	0	0	Median	161530000	0	161530000	2394	125;110;124	2249	4718	9735	9735		1	9606
SHFEQWGTLTDCVVMR	0	1	Oxidation (M)	1980.8822	0.88221641	103	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				2		18.595	18.595	2;3	2.8237E-07	10405	DP1061-9	152	101.52			NaN	NaN	NaN	0	0	Median	30286000	0	30286000	2395	103	2250	4719;4720	9736;9737;9738;9739	9739	128	4	9606
SHFEQWGTLTDCVVMR	0	1	Unmodified	1964.8873	0.88730179	103	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		19.415	19.415	2	0.011446	11478	DP1061-9	88.021	54.151			NaN	NaN	NaN	0	0	Median	0	0	0	2396	103	2250	4721	9740	9740		1	9606
SHFEQWGTLTDCVVMRDPNTK	1	1	Oxidation (M)	2536.1475	0.14749223	103	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	1	4	0				1		17.768	17.768	3	0.00012451	9261	DP1061-9	110.37	84.024			NaN	NaN	NaN	0	0	Median	22040000	0	22040000	2397	103	2251	4722	9741	9741	128	1	9606
SHFEQWGTLTDCVVMRDPNTKR	1	2	Oxidation (M)	2692.2486	0.24860326	103	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	2	4	0				1		17.115	17.115	4	0.0092745	8522	DP1061-9	69.612	46.725			NaN	NaN	NaN	0	0	Median	27494000	0	27494000	2398	103	2252	4723	9742;9743	9743	128	2	9606
SHFVAASLSNQK	1	0	Unmodified	1287.6571	0.65714914	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		2				13.635	13.635	2	0.0083983	4085	DP1061-7	106.4	60.271			NaN	NaN	NaN	0	0	Median	0	0	0	2399	402	2253	4724;4725	9744;9745	9745		2	9606
SHGFAAEFK	1	0	Unmodified	992.47158	0.4715802	222	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	2	0		1				14.333	14.333	2	0.0060125	4951	DP1061-7	110.41	71.616			NaN	NaN	NaN	0	0	Median	11814000	0	11814000	2400	222	2254	4726	9746;9747	9747		2	9606
SHISDQSPLSSK	1	0	Unmodified	1284.631	0.63099397	175	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			12.779	12.779	2	0.016559	3209	DP1061-8	81.525	47.658			NaN	NaN	NaN	0	0	Median	2998000	0	2998000	2401	175	2255	4727	9748;9749	9748		2	9606
SHTILLVQPTK	1	0	Acetyl (Protein N-term)	1277.7343	0.73433683	277	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	5	0					3	21.636	21.636	2	0.00060509	10253	DP1061-10	119.22	88.15			NaN	NaN	NaN	0	0	Median	0	0	0	2402	277	2256	4728;4729;4730	9750;9751;9752	9751		3	9606
SIALTQAR	0	1	Unmodified	858.49232	0.49231565	42	O15269	SPTLC1	Serine palmitoyltransferase 1	yes	yes	0	0	0	4	0				1		13.744	13.744	2	0.011327	4267	DP1061-9	84.916	20.708			2.9096	3.1108	NaN	1	0	Median	5656000	1861200	3794800	2403	42	2257	4731	9753	9753		1	9606
SIATLAITTLLK	1	0	Unmodified	1243.7751	0.77513901	526	Q9UBF2;Q9Y678	COPG2;COPG1	Coatomer subunit gamma-2;Coatomer subunit gamma-1	yes	no	0	0	0	2	0		1				22.777	22.777	2	0.045624	15236	DP1061-7	71.221	29.795			NaN	NaN	NaN	0	0	Median	1238500	0	1238500	2404	526	2258	4732	9754;9755	9754		2	9606
SIEIESSDVIR	0	1	Acetyl (Protein N-term)	1288.6511	0.65106071	366	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	1	0	0	2	1	1		1			20.41	20.41	2	0.0003295	11788	DP1061-8	155.84	72.061			NaN	NaN	NaN	0	0	Median	9154300	0	9154300	2405	366	2259	4733;4734	9756;9757;9758	9757		3	9606
SIGMDPSDIYAVIQIPGSR	0	1	Oxidation (M)	2034.0092	0.0091910629	513	Q9NUD5	ZCCHC3	Zinc finger CCHC domain-containing protein 3	yes	yes	0	1	0	4	0				1		21.697	21.697	2	0.00013918	14433	DP1061-9	112.42	86.442			NaN	NaN	NaN	0	0	Median	6686900	0	6686900	2406	513	2260	4735	9759	9759	623	1	9606
SILLSVPLLVVDNK	1	0	Unmodified	1508.9178	0.91778051	216	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	2	0		1				23.019	23.019	2	0.016194	15452	DP1061-7	77.744	54.372			NaN	NaN	NaN	0	0	Median	999080	0	999080	2407	216	2261	4736	9760	9760		1	9606
SILSPGGSCGPIK	1	0	Unmodified	1271.6544	0.65437195	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				16.379	16.379	2	0.0051761	7400	DP1061-7	79.693	40.388			0.77793	0.81506	NaN	1	0	Median	27008000	16655000	10352000	2408	269	2262	4737	9761;9762	9761		2	9606
SILVSPTGPSR	0	1	Unmodified	1112.619	0.61897272	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.8	1.17		1	1	1	2	16.485	16.485	2	0.00011231	6421	DP1061-10	128.35	58.75			66.296	70.88	NaN	1	0	Median	1430900000	5617900	1425300000	2409	339	2263	4738;4739;4740;4741;4742	9763;9764;9765;9766;9767;9768;9769;9770;9771;9772;9773;9774;9775;9776;9777;9778;9779;9780;9781;9782	9765		20	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Oxidation (M)	2676.216	0.21596573	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.17	0.373			5	1		17.346	17.346	2;3	3.9737E-30	7961	DP1061-8	194.67	157.65			0.83913	0.89632	13.361	3	0	Plateau	164520000	88679000	75845000	2410	455	2264	4743;4744;4745;4746;4747;4748	9783;9784;9785;9786;9787;9788;9789;9790;9791;9792;9793;9794;9795	9788	547	13	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Unmodified	2660.2211	0.22105111	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.187	18.187	3	1.0453E-34	8991	DP1061-8	166.27	156.55			0.76996	0.82243	NaN	1	0	Median	43870000	25917000	17953000	2411	455	2264	4749	9796;9797;9798;9799;9800;9801;9802;9803	9799		8	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	1	1	Oxidation (M)	3169.4557	0.4556955	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0			6			16.259	16.259	4;5	4.0291E-17	6865	DP1061-8	104.55	104.55			0.90864	0.94621	8.208	4	0	Median	253920000	132270000	121650000	2412	455	2265	4750;4751;4752;4753;4754;4755	9804;9805;9806;9807;9808;9809;9810;9811;9812	9808	547	9	9606
SIMTIVGHTDVVK	1	0	Oxidation (M)	1414.749	0.74900062	481	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	1	0	4	0				1		15.608	15.608	3	0.016924	6511	DP1061-9	62.732	37.498			NaN	NaN	NaN	0	0	Median	8379700	0	8379700	2413	481	2266	4756	9813	9813	578	1	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Oxidation (M)	2319.1417	0.1416618	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			2			23.245	23.245	2;3	1.1032E-05	15399	DP1061-8	74.123	74.123			8.2697	8.8333	NaN	1	0	Median	81204000	4701100	76502000	2414	108	2267	4757;4758	9814;9815;9816	9815	134	3	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Unmodified	2303.1467	0.14674718	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			24.096	24.096	2	2.3102E-12	16385	DP1061-8	146.81	113.02			NaN	NaN	NaN	0	0	Median	4078400	0	4078400	2415	108	2267	4759	9817;9818;9819;9820;9821	9820		5	9606
SINPDEAVAYGAAVQAAILSGDK	1	0	Unmodified	2259.1383	0.13829098	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			23.322	23.322	2;3	8.191E-20	15412	DP1061-8	176.11	121.22			NaN	NaN	NaN	0	0	Median	26343000	0	26343000	2416	113	2268	4760;4761	9822;9823;9824;9825;9826;9827;9828	9827		7	9606
SINPLGGFVHYGEVTNDFVMLK	1	0	Oxidation (M)	2452.2097	0.20968178	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	4	0				2		21.634	21.634	2;3	5.0954E-05	14379	DP1061-9	118.71	86.881			NaN	NaN	NaN	0	0	Median	54292000	0	54292000	2417	169	2269	4762;4763	9829;9830;9831;9832;9833;9834	9834	217	6	9606
SIPSMVDGLKPGQR	1	1	Oxidation (M)	1499.7766	0.77661235	115	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	1	1	0	1					14.882	14.882	3	0.026166	4692	DP1061-6	70.563	19.429			NaN	NaN	NaN	0	0	Median	4618200	0	4618200	2418	115	2270	4764	9835	9835	144	1	9606
SIQFVDWCPTGFK	1	0	Unmodified	1583.7442	0.74424959	264	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	yes	no	0	0	0	3.67	0.471			1	2		21.448	21.448	2	1.2691000000000001E-45	13061	DP1061-8	202.03	202.03			3.4676	3.6641	1.5476	2	0	Median	259500000	60310000	199190000	2419	264	2271	4765;4766;4767	9836;9837;9838;9839;9840;9841;9842;9843;9844	9837		9	9606
SISADDDLQESSR	0	1	Unmodified	1421.627	0.62703081	133	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	4	0				1		14.481	14.481	2	2.3369E-05	5163	DP1061-9	136.81	112.57			NaN	NaN	NaN	0	0	Median	10910000	0	10910000	2420	133	2272	4768	9845;9846;9847	9846		3	9606
SISISVAR	0	1	Unmodified	831.48142	0.48141661	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				15.172	15.172	2	0.0051228	5902	DP1061-7	116.88	28.855		+	NaN	NaN	NaN	0	0	Median	92513000	92513000	0	2421	80	2273	4769	9848;9849	9849		2	9606
SISLYYTGEK	1	0	Unmodified	1159.5761	0.57610486	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	1		1		1		17.073	17.073	2	0.0010392	8317	DP1061-7	110.76	67.314			24.383	25.546	NaN	1	0	Median	463650000	18161000	445490000	2422	134	2274	4770;4771	9850;9851;9852;9853;9854;9855	9851		6	9606
SISSDEVNFLVYR	0	1	Acetyl (Protein N-term)	1569.7675	0.76748745	480	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	1	0	0	3	0			1			23.606	23.606	2	1.6092E-05	15902	DP1061-8	154.35	101.62			NaN	NaN	NaN	0	0	Median	1448300	0	1448300	2423	480	2275	4772	9856;9857	9856		2	9606
SIYSQIQEQR	0	1	Unmodified	1250.6255	0.62551466	514	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	4	0				1		16.185	16.185	2	0.002522	7246	DP1061-9	114.89	69.872			NaN	NaN	NaN	0	0	Median	4433600	0	4433600	2424	514	2276	4773	9858;9859	9858		2	9606
SKAEAESLYQSK	2	0	Unmodified	1339.662	0.66195975	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3.2	1.17		2	1	1	1	12.732	12.732	2;3	2.0450999999999997E-21	2881	DP1061-7	229	162.7		+	NaN	NaN	NaN	0	0	Median	119670000	119670000	0	2425	80	2277	4774;4775;4776;4777;4778	9860;9861;9862;9863;9864;9865;9866;9867;9868;9869	9863		10	9606
SKEEAEALYHSK	2	0	Unmodified	1390.6729	0.67285879	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2.2	1.17	2	1	1	1		12.531	12.531	2;3	2.0182E-10	2088	DP1061-6	171.99	126.1		+	NaN	NaN	NaN	0	0	Median	245080000	245080000	0	2426	20	2278	4779;4780;4781;4782;4783	9870;9871;9872;9873;9874;9875;9876;9877;9878;9879;9880	9870		11	9606
SLCREEAETPAEATGKPQR	1	2	Unmodified	2129.0171	0.017129987	415	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	2	2	0		2				12.832	12.832	3	0.011894	3108	DP1061-7	81.878	39.819			NaN	NaN	NaN	0	0	Median	0	0	0	2427	415	2279	4784;4785	9881;9882	9882		2	9606
SLDGVTNDR	0	1	Unmodified	975.46214	0.46213773	527	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		13.155	13.155	2	0.044563	3537	DP1061-9	73.665	18.295			NaN	NaN	NaN	0	0	Median	7344800	0	7344800	2428	527	2280	4786	9883	9883		1	9606
SLDLDSIIAEVK	1	0	Unmodified	1301.7078	0.70784731	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2.5	1.12	1	1	1	1		22.659	22.659	2	5.7715E-10	14766	DP1061-7	206.49	122.74		+	NaN	NaN	NaN	0	0	Median	159750000	159750000	0	2429	80	2281	4787;4788;4789;4790	9884;9885;9886;9887;9888;9889;9890;9891;9892;9893;9894;9895;9896	9887		13	9606
SLEEDQEPIVSHQKPGK	2	0	Unmodified	1919.9589	0.95887005	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2	0		2				13.285	13.285	3;4	0.00059077	3552	DP1061-7	99.796	70.84			NaN	NaN	NaN	0	0	Median	46509000	0	46509000	2430	334	2282	4791;4792	9897;9898;9899;9900	9900		4	9606
SLEEIYLFSLPIK	1	0	Unmodified	1550.8596	0.85959692	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		24.035	24.035	2	2.4324E-06	16976	DP1061-9	187.16	142.73			NaN	NaN	NaN	0	0	Median	11268000	0	11268000	2431	123	2283	4793	9901;9902	9901		2	9606
SLETVYLER	0	1	Unmodified	1108.5764	0.57643921	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		17.474	17.474	2	7.4719E-09	8892	DP1061-9	201.39	114.59			NaN	NaN	NaN	0	0	Median	54729000	0	54729000	2432	360	2284	4794	9903;9904	9904		2	9606
SLEYCSTASIDSENPPDLNK	1	0	Unmodified	2238.9951	0.99505714	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.657	17.657	2	1.5914E-11	7855	DP1061-6	141.85	114.2			NaN	NaN	NaN	0	0	Median	6186800	0	6186800	2433	271	2285	4795	9905;9906;9907	9906		3	9606
SLGNILQAK	1	0	Unmodified	942.54983	0.54983053	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0				1		16.646	16.646	2	0.030971	7854	DP1061-9	76.774	23.423			NaN	NaN	NaN	0	0	Median	4022400	0	4022400	2434	318	2286	4796	9908	9908		1	9606
SLGPPQGEEDSVPR	0	1	Unmodified	1466.7001	0.70013617	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.365	15.365	2	1.479E-05	5084	DP1061-6	124.6	124.6			4.7612	5.3858	NaN	1	0	Median	20436000	3902200	16534000	2435	271	2287	4797	9909;9910	9909		2	9606
SLGVDMDDKDDAHYAVQAR	1	1	Oxidation (M)	2120.9433	0.94329634	479	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	1	1	3	0			1			14.582	14.582	3	3.1964E-12	5476	DP1061-8	155.1	129.86			NaN	NaN	NaN	0	0	Median	0	0	0	2436	479	2288	4798	9911	9911	577	1	9606
SLGYAYVNFQQPADAER	0	1	Unmodified	1927.9064	0.90644055	117	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			19.199	19.199	2	1.7047E-07	10191	DP1061-8	152.38	123.57			NaN	NaN	NaN	0	0	Median	23492000	0	23492000	2437	117	2289	4799	9912;9913	9912		2	9606
SLLEGEGSSGGGGR	0	1	Unmodified	1261.5899	0.58985744	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.5	1.12	1	1	1	1		14.096	14.096	2	1.2286E-05	4616	DP1061-7	147.3	92.24		+	NaN	NaN	NaN	0	0	Median	174380000	174380000	0	2438	17	2290	4800;4801;4802;4803	9914;9915;9916;9917;9918;9919;9920;9921	9916		8	9606
SLLIDFFR	0	1	Unmodified	1009.5597	0.55966693	498	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		22.99	22.99	2	5.1769E-06	15834	DP1061-9	137.18	97.076			20.388	21.798	NaN	1	0	Median	13143000	628500	12515000	2439	498	2291	4804	9922;9923	9923		2	9606
SLLVIPNTLAVNAAQDSTDLVAK	1	0	Unmodified	2352.29	0.2900406	131	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			22.191	22.191	2	5.783E-18	14029	DP1061-8	159.18	132.82			NaN	NaN	NaN	0	0	Median	12333000	0	12333000	2440	131	2292	4805	9924;9925;9926;9927	9926		4	9606
SLMSADNVR	0	1	Oxidation (M)	1007.4706	0.47059393	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2	0		1				12.51	12.51	2	0.035648	2682	DP1061-7	73.665	19.955			NaN	NaN	NaN	0	0	Median	27459000	0	27459000	2441	45	2293	4806	9928	9928		1	9606
SLNNQFASFIDK	1	0	Unmodified	1382.683	0.68302954	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2.5	1.12	1	1	1	1		19.623	19.623	2	0.0001985	11692	DP1061-9	124.42	37.525		+	NaN	NaN	NaN	0	0	Median	127980000	127980000	0	2442	80	2294	4807;4808;4809;4810	9929;9930;9931;9932;9933;9934;9935;9936	9936		8	9606
SLNNQFASFIDKVR	1	1	Unmodified	1637.8526	0.85255449	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	3	1		1		1		19.829	19.829	3	0.0032536	11617	DP1061-7	115.06	82.626		+	NaN	NaN	NaN	0	0	Median	19536000	19536000	0	2443	80	2295	4811;4812	9937;9938;9939;9940	9938		4	9606
SLPDLGLR	0	1	Unmodified	869.49707	0.49706667	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				17.92	17.92	2	9.2708E-10	9462	DP1061-7	152.63	75.787			0.88151	0.87875	NaN	1	0	Median	1089200000	585370000	503850000	2444	116	2296	4813	9941;9942;9943;9944	9943		4	9606
SLPDLGLRQENIR	0	2	Unmodified	1509.8263	0.82633974	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				17.095	17.095	2;3	0.0019738	8516	DP1061-7	84.31	84.31			1.009	1.0421	5.8493	2	0	Median	46265000	19572000	26692000	2445	116	2297	4814;4815	9945;9946;9947;9948;9949	9948		5	9606
SLPDTELMKDTAR	1	1	Oxidation (M)	1491.7239	0.72390808	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2.14	0.833	2	2	3			14.364	14.364	2;3	0.00081662	5269	DP1061-8	118.28	58.371			NaN	NaN	NaN	0	0	Median	94921000	0	94921000	2446	182	2298	4816;4817;4818;4819;4820;4821;4822	9950;9951;9952;9953;9954;9955;9956;9957;9958;9959;9960;9961;9962	9962	232	13	9606
SLPNILTDDRFK	1	1	Unmodified	1417.7565	0.75652884	468	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	1	3	0			1			18.439	18.439	3	0.028311	9346	DP1061-8	68.515	26.04			NaN	NaN	NaN	0	0	Median	0	0	0	2447	468	2299	4823	9963	9963		1	9606
SLPSQQMVNR	0	1	Oxidation (M)	1174.5765	0.57645598	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	1	0	2	0		1				12.695	12.695	2	0.045535	3025	DP1061-7	69.825	42.936			NaN	NaN	NaN	0	0	Median	7608600	0	7608600	2448	489	2300	4824	9964	9964		1	9606
SLQSVAEER	0	1	Unmodified	1017.5091	0.50908792	228	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	3	2	1				1	14.021	14.021	2	0.00041248	5393	DP1061-10	157.68	110.6			NaN	NaN	NaN	0	0	Median	70462000	0	70462000	2449	228	2301	4825;4826	9965;9966;9967;9968;9969;9970;9971;9972;9973;9974;9975;9976;9977	9967		13	9606
SLSDNGQPGTPDPADSGGTSAK	1	0	Unmodified	2057.9138	0.91377035	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					14.328	14.328	2	4.2956E-05	4100	DP1061-6	119.65	76.674			NaN	NaN	NaN	0	0	Median	5898200	0	5898200	2450	68	2302	4827	9978;9979	9978		2	9606
SLVGLGGTK	1	0	Unmodified	830.48617	0.48616764	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.5	1.5	1			1		14.926	14.926	2	0.021716	4748	DP1061-6	82.75	32.726		+	NaN	NaN	NaN	0	0	Median	74261000	74261000	0	2451	20	2303	4828;4829	9980;9981;9982;9983	9981		4	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	2 Oxidation (M)	2934.4328	0.43277522	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.53	1.02	11	2		2		22.761	22.761	3;4	1.2617E-09	12143	DP1061-6	93.407	80.914			0.75327	0.79267	9.1727	13	0	Median	936610000	512750000	423860000	2452	309	2304	4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843;4844	9984;9985;9986;9987;9988;9989;9990;9991;9992;9993;9994;9995;9996;9997;9998;9999;10000;10001;10002;10003;10004;10005;10006;10007;10008;10009;10010;10011;10012;10013;10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027;10028	10003	407;408	44	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	Oxidation (M)	2918.4379	0.43786059	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.67	1.11	1	2	1	2		19.399	19.399	4	1.8874E-14	9193	DP1061-6	112.85	112.85			0.70432	0.78263	23.209	6	0	Median	117130000	59992000	57141000	2453	309	2304	4845;4846;4847;4848;4849;4850	10029;10030;10031;10032;10033;10034;10035;10036;10037;10038;10039;10040;10041;10042;10043	10029	407;408	15	9606
SLVQEMVGSFGK	1	0	Oxidation (M)	1296.6384	0.63838754	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					16.892	16.892	2	0.0073996	6871	DP1061-6	88.134	30.275			NaN	NaN	NaN	0	0	Median	9665500	0	9665500	2454	66	2305	4851	10044;10045	10044	64	2	9606
SMEEQLLVVER	0	1	Oxidation (M)	1347.6704	0.67041595	268	P78316	NOP14	Nucleolar protein 14	yes	yes	0	1	0	2	0		1				17.225	17.225	2	0.014775	8669	DP1061-7	81.771	47.849			NaN	NaN	NaN	0	0	Median	17688000	0	17688000	2455	268	2306	4852	10046;10047	10046	334	2	9606
SMENYYQESGR	0	1	Oxidation (M)	1378.5459	0.54594371	183	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	3	0			1			13.686	13.686	2	0.00062095	4314	DP1061-8	119.68	94.905			NaN	NaN	NaN	0	0	Median	3881500	0	3881500	2456	183	2307	4853	10048;10049	10049	235	2	9606
SMFTQALNLDSTSVR	0	1	Oxidation (M)	1684.809	0.80903469	54	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	1	0	1	0	1					18.675	18.675	2	0.042283	8980	DP1061-6	67.456	41.339			NaN	NaN	NaN	0	0	Median	0	0	0	2457	54	2308	4854	10050	10050		1	9606
SMLMEQDPDVAVTVR	0	1	Oxidation (M)	1705.8015	0.80150647	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	1	0	2	0		1				17.613	17.613	2	0.0060797	9275	DP1061-7	86.028	41.414			NaN	NaN	NaN	0	0	Median	7133800	0	7133800	2458	428	2309	4855	10051	10051	525	1	9606
SNASTLESHETEEPAAK	1	0	Unmodified	1799.8174	0.81735077	532	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	3	0			1			12.811	12.811	3	0.01084	3247	DP1061-8	75.877	32.116			NaN	NaN	NaN	0	0	Median	5887100	0	5887100	2459	532	2310	4856	10052	10052		1	9606
SNESHCSLQIK	1	0	Unmodified	1301.6034	0.60339901	413	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				12.557	12.557	2	0.0021822	2680	DP1061-7	145.99	95.536			NaN	NaN	NaN	0	0	Median	3013500	0	3013500	2460	413	2311	4857	10053	10053		1	9606
SNESVDIQDQEEK	1	0	Unmodified	1519.6638	0.66381024	380	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	0	1					13.871	13.871	2	0.00072298	3645	DP1061-6	113.69	70.405			NaN	NaN	NaN	0	0	Median	2687100	0	2687100	2461	380	2312	4858	10054	10054		1	9606
SNLGSVVLQLK	1	0	Unmodified	1156.6816	0.68157298	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	2	0		1				18.773	18.773	2	0.0052471	10282	DP1061-7	96.342	65.73			NaN	NaN	NaN	0	0	Median	5494000	0	5494000	2462	45	2313	4859	10055;10056	10056		2	9606
SNNVEMDWVLK	1	0	Oxidation (M)	1349.6286	0.62855113	153	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	4	0				1		18.073	18.073	2	0.006865	9755	DP1061-9	90.149	60.405			NaN	NaN	NaN	0	0	Median	9641300	0	9641300	2463	153	2314	4860	10057	10057	196	1	9606
SNSEVEDVGPTSHNR	0	1	Unmodified	1626.7234	0.72339081	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				12.526	12.526	3	0.0056404	2707	DP1061-7	79.022	48.024			NaN	NaN	NaN	0	0	Median	10428000	0	10428000	2464	313	2315	4861	10058;10059	10059		2	9606
SNTVVIMNMQGQIVR	0	1	2 Oxidation (M)	1720.86	0.86002441	366	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	2	0	3	0			1			15.629	15.629	2	0.0014942	6411	DP1061-8	100.88	69.036			NaN	NaN	NaN	0	0	Median	0	0	0	2465	366	2316	4862	10060	10060	480;481	1	9606
SNYNLPMHK	1	0	Oxidation (M)	1118.5179	0.51787847	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	4	0				1		12.683	12.683	2	0.037105	2847	DP1061-9	73.248	33.995			NaN	NaN	NaN	0	0	Median	46010000	0	46010000	2466	162	2317	4863	10061	10061		1	9606
SPAESCDLLGDIQTCIR	0	1	Unmodified	1933.8874	0.88736137	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	3	0			1			20.412	20.412	2	0.0028997	11959	DP1061-8	94.688	67.012			NaN	NaN	NaN	0	0	Median	16309000	0	16309000	2467	466	2318	4864	10062	10062		1	9606
SPAGPAATPAQAQAASTPR	0	1	Unmodified	1748.8806	0.88056015	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	1.29	1	1	2	1	1	14.076	14.076	2	1.6437E-45	4438	DP1061-9	245.4	245.4			NaN	NaN	NaN	0	0	Median	123110000	0	123110000	2468	318	2319	4865;4866;4867;4868;4869;4870	10063;10064;10065;10066;10067;10068;10069;10070;10071;10072	10072		10	9606
SPASIEVVKPMEAASAILSQADAR	1	1	Oxidation (M)	2456.2581	0.25808854	475	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	1	1	3	0			1			19.373	19.373	3	2.191E-05	10566	DP1061-8	118.08	87.589			NaN	NaN	NaN	0	0	Median	16436000	0	16436000	2469	475	2320	4871	10073;10074;10075;10076	10075	573	4	9606
SPASIEVVKPMEAASAILSQADAR	1	1	Unmodified	2440.2632	0.26317392	475	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	1	3	0			1			21.236	21.236	3	0.0015973	12835	DP1061-8	88.709	64.836			NaN	NaN	NaN	0	0	Median	4629600	0	4629600	2470	475	2320	4872	10077;10078	10078		2	9606
SPDFTNENPLETR	0	1	Unmodified	1518.6951	0.69505079	84	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	0	1					17.717	17.717	2	0.00054191	7886	DP1061-6	115.91	78.407			NaN	NaN	NaN	0	0	Median	5674300	0	5674300	2471	84	2321	4873	10079;10080	10080		2	9606
SPEQQLSATQK	1	0	Unmodified	1215.6095	0.60953025	211	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	3	0			1			12.908	12.908	2	0.0026708	3248	DP1061-8	163.38	102.41			NaN	NaN	NaN	0	0	Median	18497000	0	18497000	2472	211	2322	4874	10081;10082	10082		2	9606
SPEYPEGR	0	1	Unmodified	933.41921	0.41921028	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	2	1	1	1		11.66	11.66	2	2.6615E-41	2170	DP1061-6	204.65	204.65			0.71282	0.73193	7.1285	5	0	Median	2198600000	1272000000	926610000	2473	309	2323	4875;4876;4877;4878;4879	10083;10084;10085;10086;10087;10088;10089;10090;10091;10092;10093;10094;10095;10096;10097	10085		15	9606
SPGEPGGAAPER	0	1	Unmodified	1123.5258	0.52580062	446	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	0	0	2	0		1				12.424	12.424	2	0.051548	2552	DP1061-7	69.65	23.225			NaN	NaN	NaN	0	0	Median	6907400	0	6907400	2474	446	2324	4880	10098	10098		1	9606
SPISVPGGSALISNLGK	1	0	Unmodified	1595.8883	0.88827129	207	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	2	0		1				19.865	19.865	2	0.014622	11662	DP1061-7	78.903	38.985			NaN	NaN	NaN	0	0	Median	5181500	0	5181500	2475	207	2325	4881	10099;10100	10099		2	9606
SPLAQDSPSQGSPALYR	0	1	Unmodified	1772.8693	0.86932676	384	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				16.426	16.426	2	0.0265	7572	DP1061-7	80.507	32.516			NaN	NaN	NaN	0	0	Median	0	0	0	2476	384	2326	4882	10101	10101		1	9606
SPLLPAVLEGLAK	1	0	Unmodified	1306.786	0.78603805	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2.5	0.5		1	1			22.037	22.037	2	0.0010912	14243	DP1061-7	109.16	46.854			NaN	NaN	NaN	0	0	Median	45787000	0	45787000	2477	428	2327	4883;4884	10102;10103;10104;10105	10102		4	9606
SPLSALAR	0	1	Unmodified	813.47085	0.47085192	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				15.949	15.949	2	0.011857	6752	DP1061-7	104.75	10.485			NaN	NaN	NaN	0	0	Median	34817000	0	34817000	2478	466	2328	4885	10106;10107	10106		2	9606
SPPPELTDTATSTKR	1	1	Unmodified	1599.8104	0.8104149	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					13.468	13.468	3	0.0002245	3256	DP1061-6	101.36	59.956			NaN	NaN	NaN	0	0	Median	8990500	0	8990500	2479	182	2329	4886	10108;10109	10109		2	9606
SPPPESMDTPTSTR	0	1	Oxidation (M)	1517.6668	0.66678713	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0.816	1	1	1			12.476	12.476	2	1.768E-05	2067	DP1061-6	121.68	80.396			NaN	NaN	NaN	0	0	Median	30593000	0	30593000	2480	182	2330	4887;4888;4889	10110;10111;10112;10113;10114;10115;10116	10110	233	7	9606
SPPPESMDTPTSTR	0	1	Unmodified	1501.6719	0.67187251	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	2					13.828	13.828	2	0.0052116	3494	DP1061-6	89.805	57.962			NaN	NaN	NaN	0	0	Median	5065500	0	5065500	2481	182	2330	4890;4891	10117;10118;10119	10118		3	9606
SPPPESVDTPTSTK	1	0	Unmodified	1441.6937	0.69365381	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.57	1.05	1	3	1	2		13.19	13.19	2	8.4033E-06	3460	DP1061-7	135.8	78.448			NaN	NaN	NaN	0	0	Median	51488000	0	51488000	2482	182	2331	4892;4893;4894;4895;4896;4897;4898	10120;10121;10122;10123;10124;10125;10126;10127;10128;10129	10123		10	9606
SPPPGMGLNQNR	0	1	Oxidation (M)	1282.6088	0.60881874	139	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	2	0		1				12.513	12.513	2	0.025339	2647	DP1061-7	74.92	24.88			NaN	NaN	NaN	0	0	Median	7845200	0	7845200	2483	139	2332	4899	10130	10130	186	1	9606
SPPSVTLFPPSTEELNGNK	1	0	Unmodified	2013.0055	0.0054858935	21	CON__Q1RMN8			yes	yes	0	0	0	5	0					3	22.827	22.827	2	5.9892E-27	11909	DP1061-10	213.99	141.46		+	NaN	NaN	NaN	0	0	Median	16006000	16006000	0	2484	21	2333	4900;4901;4902	10131;10132;10133;10134;10135;10136	10134		6	
SPQPDPVDTPASTK	1	0	Unmodified	1438.694	0.69398816	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0.816		1	1	1		13.641	13.641	2	1.1067E-05	4144	DP1061-8	133.05	76.618			NaN	NaN	NaN	0	0	Median	26825000	0	26825000	2485	182	2334	4903;4904;4905	10137;10138;10139;10140;10141	10140		5	9606
SPQPDPVGTPTIFKPQSK	2	0	Unmodified	1923.0102	0.010177341	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				16.493	16.493	3	0.00084883	7627	DP1061-7	99.092	62.7			NaN	NaN	NaN	0	0	Median	32490000	0	32490000	2486	182	2335	4906;4907	10142;10143;10144	10143		3	9606
SPQPDPVKTPTSSK	2	0	Unmodified	1467.7569	0.75692277	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					12.427	12.427	3	8.4344E-05	1972	DP1061-6	116.58	83.487			NaN	NaN	NaN	0	0	Median	10408000	0	10408000	2487	182	2336	4908	10145;10146	10145		2	9606
SPQPESFK	1	0	Unmodified	918.4447	0.44469675	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					12.84	12.84	2	0.0023663	2488	DP1061-6	122.74	57.966			NaN	NaN	NaN	0	0	Median	15558000	0	15558000	2488	182	2337	4909	10147;10148	10147		2	9606
SPQSDPADTPTNTK	1	0	Unmodified	1457.6634	0.66341631	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			12.422	12.422	2	5.521499999999999E-46	1967	DP1061-6	265.75	155.21			NaN	NaN	NaN	0	0	Median	53448000	0	53448000	2489	182	2338	4910;4911;4912	10149;10150;10151;10152;10153;10154;10155	10150		7	9606
SPQVKPASTMGMGPLGK	2	0	2 Oxidation (M)	1716.8539	0.85387639	318	Q13428	TCOF1	Treacle protein	yes	yes	0	2	1	2	0		1				13.075	13.075	3	0.055051	3393	DP1061-7	55.546	31.194			NaN	NaN	NaN	0	0	Median	6282900	0	6282900	2490	318	2339	4913	10156	10156		1	9606
SPSDLHISPLAK	1	0	Unmodified	1263.6823	0.68230126	78	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	2	0		2				15.605	15.605	2;3	9.2317E-05	6494	DP1061-7	133.23	88.363			NaN	NaN	NaN	0	0	Median	19244000	0	19244000	2491	78	2340	4914;4915	10157;10158;10159;10160	10160		4	9606
SPSLLQSGAK	1	0	Unmodified	986.53966	0.53965977	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	3.5	0.5			1	1		14.04	14.04	2	0.00025589	4735	DP1061-8	138.98	90.884			NaN	NaN	NaN	0	0	Median	26774000	0	26774000	2492	466	2341	4916;4917	10161;10162;10163	10162		3	9606
SPSLSQSQASR	0	1	Unmodified	1146.5629	0.56291441	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				12.456	12.456	2	0.00011912	2572	DP1061-7	133.89	49.649			NaN	NaN	NaN	0	0	Median	12529000	0	12529000	2493	489	2342	4918	10164;10165	10164		2	9606
SPTWFGIPR	0	1	Unmodified	1059.5502	0.55016488	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				19.889	19.889	2	0.0018589	11640	DP1061-7	107.9	80.371			1.1652	1.2927	NaN	1	0	Median	27634000	12512000	15122000	2494	269	2343	4919	10166;10167;10168;10169	10166		4	9606
SPYQEFTDHLVK	1	0	Unmodified	1462.7092	0.70924429	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4.33	0.471				2	1	20.189	20.189	2;3	8.4285E-05	9312	DP1061-9	133.89	66.33			8.3796	8.7594	NaN	1	0	Median	131170000	9566400	121600000	2495	123	2344	4920;4921;4922	10170;10171;10172;10173;10174	10174		5	9606
SQAEPLSGNKEPLADTSSNQQK	2	0	Unmodified	2328.1193	0.11934645	198	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	1	0	1					13.94	13.94	3	1.0323E-07	3663	DP1061-6	124.73	103.13			NaN	NaN	NaN	0	0	Median	5026000	0	5026000	2496	198	2345	4923	10175;10176;10177	10177		3	9606
SQEDEISSPVNK	1	0	Unmodified	1331.6205	0.62048887	380	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1.5	0.5	1	1				13.938	13.938	2	0.00052358	3654	DP1061-6	119.53	81.253			NaN	NaN	NaN	0	0	Median	8616300	0	8616300	2497	380	2346	4924;4925	10178;10179;10180;10181;10182	10179		5	9606
SQESGYYDR	0	1	Unmodified	1103.452	0.45196697	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				12.857	12.857	2	0.0022974	3081	DP1061-7	105.1	71.744			4.8094	5.4545	NaN	1	0	Median	11657000	1599200	10057000	2498	180	2347	4926	10183	10183		1	9606
SQGCSEQVLTVLK	1	0	Unmodified	1447.7341	0.73407884	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.344	17.344	2	0.000748	7492	DP1061-6	113.38	72.262			NaN	NaN	NaN	0	0	Median	8577200	0	8577200	2499	271	2348	4927	10184	10184		1	9606
SQGGVQPIPSQGGK	1	0	Unmodified	1338.6892	0.68917755	522	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	2	0		1				13.224	13.224	2	0.0056958	3565	DP1061-7	98.182	52.502			NaN	NaN	NaN	0	0	Median	0	0	0	2500	522	2349	4928	10185	10185		1	9606
SQHDILQMICSK	1	0	Oxidation (M)	1474.6908	0.69083381	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				15.977	15.977	2	0.0033879	6860	DP1061-7	94.191	65.986			NaN	NaN	NaN	0	0	Median	10223000	0	10223000	2501	182	2350	4929	10186;10187	10187	234	2	9606
SQIFSTASDNQPTVTIK	1	0	Unmodified	1835.9265	0.92650729	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			17.638	17.638	2	7.2277E-08	8442	DP1061-8	134.68	81.447			NaN	NaN	NaN	0	0	Median	7867200	0	7867200	2502	112	2351	4930	10188;10189;10190;10191	10191		4	9606
SQIHMPGVGDFAVSDISFLPDPCALPEQQK	1	0	Oxidation (M)	3298.5638	0.56384897	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	1	0	3	0			1			21.797	21.797	3	0.004001	13580	DP1061-8	51.66	30.405			NaN	NaN	NaN	0	0	Median	4094300	0	4094300	2503	341	2352	4931	10192	10192	454	1	9606
SQNFDILQSAISK	1	0	Unmodified	1449.7464	0.74635808	520	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				19.468	19.468	2	0.0013195	11200	DP1061-7	106.67	69.068			NaN	NaN	NaN	0	0	Median	6587200	0	6587200	2504	520	2353	4932	10193;10194	10194		2	9606
SQPDPVDTPTSSKPQSK	2	0	Unmodified	1797.8745	0.87447172	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.816	1	1	1			12.449	12.449	3	5.2307E-09	2028	DP1061-6	172.42	151.46			NaN	NaN	NaN	0	0	Median	83303000	0	83303000	2505	182	2354	4933;4934;4935	10195;10196;10197;10198;10199;10200	10195		6	9606
SQPFVDHVFTFTILDNR	0	1	Unmodified	2035.0163	0.016325351	427	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		21.661	21.661	3	0.015319	14321	DP1061-9	73.809	56.731			NaN	NaN	NaN	0	0	Median	12487000	0	12487000	2506	427	2355	4936	10201;10202	10201		2	9606
SQTELPDEK	1	0	Unmodified	1045.4928	0.49276916	457	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				12.842	12.842	2	0.049186	3095	DP1061-7	72.607	29.361			NaN	NaN	NaN	0	0	Median	5784300	0	5784300	2507	457	2356	4937	10203	10203		1	9606
SQVFSTAADGQTQVEIK	1	0	Unmodified	1807.8952	0.89520716	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			2			17.457	17.457	2	1.3086E-07	7987	DP1061-8	132.86	92.13			NaN	NaN	NaN	0	0	Median	12209000	0	12209000	2508	166	2357	4938;4939	10204;10205;10206;10207;10208	10204		5	9606
SQYEQLAEQNR	0	1	Unmodified	1364.6321	0.6320566	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.58	1	1		1	1	14.709	14.709	2	7.7911E-06	4400	DP1061-6	190.88	171.62		+	NaN	NaN	NaN	0	0	Median	95916000	95916000	0	2509	17	2358	4940;4941;4942;4943	10209;10210;10211;10212;10213;10214;10215	10212		7	9606
SQYEQLAEQNRK	1	1	Unmodified	1492.727	0.72701962	17	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.5	0.957	1	2	2	1		13.314	13.314	2;3	1.624E-05	2948	DP1061-6	155.33	125.2		+	NaN	NaN	NaN	0	0	Median	481190000	481190000	0	2510	17	2359	4944;4945;4946;4947;4948;4949	10216;10217;10218;10219;10220;10221;10222;10223;10224;10225;10226	10217		11	9606
SREIFLSQPILLELEAPLK	1	1	Unmodified	2195.2566	0.25655562	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	4	0				1		22.733	22.733	3	2.4457E-12	15510	DP1061-9	156.39	125.42			NaN	NaN	NaN	0	0	Median	18740000	0	18740000	2511	163;233;234	2360	4950	10227;10228	10227		2	9606
SRYEQVDLVGK	1	1	Unmodified	1292.6725	0.67246486	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	1	3	0			1			14.816	14.816	2	0.045688	5611	DP1061-8	91.584	52.562			NaN	NaN	NaN	0	0	Median	6651800	0	6651800	2512	463	2361	4951	10229	10229		1	9606
SSAVDPEPQVK	1	0	Unmodified	1155.5772	0.57716749	375	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	3	0			1			13.312	13.312	2	0.040625	3754	DP1061-8	72.928	29.12			NaN	NaN	NaN	0	0	Median	7006800	0	7006800	2513	375	2362	4952	10230	10230		1	9606
SSAVDPEPQVKLEDVLPLAFTR	1	1	Unmodified	2410.2744	0.27439053	375	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	1	3	0			1			21.857	21.857	3	0.0036216	13579	DP1061-8	84.107	45.371			NaN	NaN	NaN	0	0	Median	4141400	0	4141400	2514	375	2363	4953	10231;10232	10231		2	9606
SSDAFTTQHALR	0	1	Unmodified	1332.6422	0.64222736	74	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	1.67	0.471	1	2				13.961	13.961	2;3	5.3386E-05	4438	DP1061-7	141.71	104.65			NaN	NaN	NaN	0	0	Median	22088000	0	22088000	2515	74	2364	4954;4955;4956	10233;10234;10235;10236;10237;10238	10236		6	9606
SSDNKLEETLTR	1	1	Unmodified	1391.6892	0.68923713	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	1	2	0		1				14.758	14.758	3	0.0015475	5555	DP1061-7	92.295	38.805			NaN	NaN	NaN	0	0	Median	8202700	0	8202700	2516	463	2365	4957	10239;10240	10240		2	9606
SSFSGWK	1	0	Unmodified	797.3708	0.37080353	520	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				15.4	15.4	2	0.049919	6193	DP1061-7	73.975	36.329			NaN	NaN	NaN	0	0	Median	5274300	0	5274300	2517	520	2366	4958	10241	10241		1	9606
SSFSSDPDEKAQDSK	2	0	Unmodified	1626.7009	0.70092403	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					12.453	12.453	3	0.0027652	2066	DP1061-6	85.163	57.753			NaN	NaN	NaN	0	0	Median	5580300	0	5580300	2518	182	2367	4959	10242	10242		1	9606
SSGEIVYCGQVFEK	1	0	Unmodified	1601.7396	0.73955814	286	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	17.741	17.741	2	0.0080908	7330	DP1061-10	90.434	42.875			NaN	NaN	NaN	0	0	Median	0	0	0	2519	286	2368	4960	10243	10243		1	9606
SSGPTSLFAVTVAPPGAR	0	1	Unmodified	1713.905	0.90498399	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				20.045	20.045	2	1.7556E-05	11749	DP1061-7	96.591	96.591			6.7152	7.339	NaN	1	0	Median	46269000	5920500	40349000	2520	281	2369	4961	10244;10245;10246;10247;10248	10244		5	9606
SSGPYGGGGQYFAK	1	0	Unmodified	1374.6204	0.62042929	103	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		15.876	15.876	2	0.0091147	6928	DP1061-9	85.355	57.53			NaN	NaN	NaN	0	0	Median	18200000	0	18200000	2521	103	2370	4962	10249;10250	10249		2	9606
SSGPYGGGGQYFAKPR	1	1	Unmodified	1627.7743	0.77430417	103	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		15.045	15.045	2;3	6.2411E-09	5739	DP1061-9	174.46	174.46			NaN	NaN	NaN	0	0	Median	143020000	0	143020000	2522	103	2371	4963;4964	10251;10252;10253;10254	10252		4	9606
SSGSPYGGGYGSGGGSGGYGSR	0	1	Unmodified	1909.7827	0.7826966	208	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		14.864	14.864	2	6.1842E-15	5608	DP1061-9	176.42	144.16			NaN	NaN	NaN	0	0	Median	15517000	0	15517000	2523	208	2372	4965	10255;10256;10257	10256		3	9606
SSGSSSSGLGTVSNSPASQR	0	1	Unmodified	1851.8559	0.85586154	539	Q9UPP1	PHF8	Histone lysine demethylase PHF8	yes	yes	0	0	0	2.67	0.471		1	2			13.701	13.701	2	1.6338E-35	4083	DP1061-7	230.57	199.42			NaN	NaN	NaN	0	0	Median	6295000	0	6295000	2524	539	2373	4966;4967;4968	10258;10259;10260;10261	10258		4	9606
SSISETLSGTDTFSSSNNHEK	1	0	Unmodified	2226.9877	0.98766358	384	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				16.208	16.208	3	0.0029164	7208	DP1061-7	91.889	56.791			NaN	NaN	NaN	0	0	Median	8505700	0	8505700	2525	384	2374	4969	10262	10262		1	9606
SSLGSLQTPEAVTTR	0	1	Unmodified	1545.7999	0.79985021	400	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	2	0		1				16.746	16.746	2	0.012501	7939	DP1061-7	80.014	47.264			NaN	NaN	NaN	0	0	Median	7283200	0	7283200	2526	400	2375	4970	10263;10264;10265	10263		3	9606
SSMGMDISAIDLINIESFSSR	0	1	2 Oxidation (M)	2304.0614	0.061362567	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	2	0	3	0			1			22.634	22.634	2	2.1734E-14	14647	DP1061-8	166.9	112.81			NaN	NaN	NaN	0	0	Median	0	0	0	2527	31	2376	4971	10266	10266	22;23	1	9606
SSMSGLHLVK	1	0	Oxidation (M)	1073.5539	0.55392962	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	1.22	2	1		1		12.977	12.977	2;3	1.2774E-06	2517	DP1061-6	137.14	137.14			0.82868	0.87281	4.0172	4	0	Median	502680000	271650000	231030000	2528	309	2377	4972;4973;4974;4975	10267;10268;10269;10270;10271;10272;10273;10274;10275;10276;10277;10278;10279;10280;10281	10270	409	15	9606
SSMSGLHLVK	1	0	Unmodified	1057.559	0.559015	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.623	14.623	2	3.8702E-07	4398	DP1061-6	141.52	121.73			0.79136	0.88459	NaN	1	0	Median	105470000	58983000	46489000	2529	309	2377	4976	10282;10283;10284;10285	10283		4	9606
SSMSGLHLVKQGR	1	1	Oxidation (M)	1414.7351	0.73508189	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					12.518	12.518	3	0.00054604	2104	DP1061-6	89.356	89.356			0.77135	0.83769	NaN	1	0	Median	14302000	7285800	7015700	2530	309	2378	4977	10286;10287	10286	409	2	9606
SSPELEDTATSSK	1	0	Unmodified	1350.6151	0.61506914	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				13.238	13.238	2	3.8429E-05	2917	DP1061-6	132.25	90.801			NaN	NaN	NaN	0	0	Median	11867000	0	11867000	2531	182	2379	4978;4979	10288;10289;10290;10291	10289		4	9606
SSPSARPPDVPGQQPQAAK	1	1	Unmodified	1916.9704	0.97043779	450	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3	0			1			13.465	13.465	3	0.041919	3911	DP1061-8	59.252	11.038			NaN	NaN	NaN	0	0	Median	11620000	0	11620000	2532	450	2380	4980	10292	10292		1	9606
SSPVPVSDTQK	1	0	Unmodified	1143.5772	0.57716749	395	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	1.5	0.5	1	1				12.786	12.786	2	0.015993	2958	DP1061-7	83.869	35.445			NaN	NaN	NaN	0	0	Median	6572400	0	6572400	2533	395	2381	4981;4982	10293;10294;10295	10294		3	9606
SSQAFFSK	1	0	Unmodified	900.43413	0.43413207	30	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2	0		1				14.756	14.756	2	0.021287	5513	DP1061-7	89.752	45.031			NaN	NaN	NaN	0	0	Median	9757300	0	9757300	2534	30	2382	4983	10296;10297	10296		2	9606
SSQPDPDKNPASSK	2	0	Unmodified	1456.6794	0.67940073	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				12.405	12.405	3	3.8597E-06	1938	DP1061-6	132.51	85.207			NaN	NaN	NaN	0	0	Median	38647000	0	38647000	2535	182	2383	4984;4985	10298;10299;10300;10301	10299		4	9606
SSQPQAGSQGPQTFR	0	1	Unmodified	1574.7437	0.74373232	317	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	3	0			1			13.832	13.832	2	0.0011495	4547	DP1061-8	101.35	54.089			NaN	NaN	NaN	0	0	Median	4343900	0	4343900	2536	317	2384	4986	10302	10302		1	9606
SSQSSSQQFSGIGR	0	1	Unmodified	1454.675	0.67498405	440	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			14.931	14.931	2	0.024602	5831	DP1061-8	80.737	43.229			NaN	NaN	NaN	0	0	Median	0	0	0	2537	440	2385	4987	10303	10303		1	9606
SSSIIGSSSASHTSQATSGANSK	1	0	Unmodified	2151.004	0.0039823436	218	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	2	0		1				12.589	12.589	3	5.197E-05	2747	DP1061-7	114.46	76.443			NaN	NaN	NaN	0	0	Median	3190100	0	3190100	2538	218	2386	4988	10304;10305	10305		2	9606
SSTATHPPGPAVQLNK	1	0	Unmodified	1603.8318	0.83181904	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	4	1.15		2	2	2	6	15.978	15.978	2;3	4.7408E-08	3976	DP1061-9	166.11	130.15			54.644	58.368	4.2978	3	0	Median	940850000	17819000	923030000	2539	339	2387	4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000	10306;10307;10308;10309;10310;10311;10312;10313;10314;10315;10316;10317;10318;10319;10320;10321;10322;10323;10324	10324		19	9606
SSTPLPTISSSAENTR	0	1	Unmodified	1646.8111	0.81114318	175	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3.5	0.5			1	1		16.115	16.115	2	6.6885E-05	7012	DP1061-9	114.24	60.173			NaN	NaN	NaN	0	0	Median	16666000	0	16666000	2540	175	2388	5001;5002	10325;10326;10327	10327		3	9606
SSYLESPR	0	1	Unmodified	937.45051	0.45051041	198	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1	0	1					14.021	14.021	2	0.050105	3758	DP1061-6	73.248	39.698			NaN	NaN	NaN	0	0	Median	4482000	0	4482000	2541	198	2389	5003	10328	10328		1	9606
STAGDTHLGGEDFDNR	0	1	Unmodified	1690.7183	0.71830543	113	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0			4			14.573	14.573	2;3	1.2983999999999999E-92	5252	DP1061-8	262.11	246.54			10.704	11.227	6.8153	2	0	Median	416410000	38478000	377930000	2542	113	2390	5004;5005;5006;5007	10329;10330;10331;10332;10333;10334;10335;10336	10330		8	9606
STCIYGGAPK	1	0	Unmodified	1052.4961	0.4960804	130;440	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3	0			1			13.751	13.751	2	0.0067653	4388	DP1061-8	99.442	78.743			NaN	NaN	NaN	0	0	Median	75556000	0	75556000	2543	130;440	2391	5008	10337;10338	10338		2	9606
STDSSSYPSPCASPSPPSSGK	1	0	Unmodified	2081.8848	0.88477841	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1	0	2					14.777	14.777	2	0.0032565	4655	DP1061-6	87.824	65.503			NaN	NaN	NaN	0	0	Median	2629000	0	2629000	2544	497	2392	5009;5010	10339;10340	10340		2	9606
STDTGVSLPSYEEDQGSK	1	0	Acetyl (Protein N-term)	1940.8487	0.84871048	540	Q9Y241	HIGD1A	HIG1 domain family member 1A, mitochondrial	yes	yes	1	0	0	5	0					3	18.976	18.976	2	0.0020943	8251	DP1061-10	86.699	55.221			NaN	NaN	NaN	0	0	Median	6030200	0	6030200	2545	540	2393	5011;5012;5013	10341;10342;10343;10344	10342		4	9606
STEEQELEK	1	0	Unmodified	1091.4982	0.49824846	536	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	2	0		1				12.567	12.567	2	0.0010294	2760	DP1061-7	123.98	43.754			NaN	NaN	NaN	0	0	Median	11500000	0	11500000	2546	536	2394	5014	10345	10345		1	9606
STESLQANVQR	0	1	Unmodified	1231.6157	0.61567826	146	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4	0				1		13.47	13.47	2	0.010151	3955	DP1061-9	88.819	48.752			NaN	NaN	NaN	0	0	Median	3396000	0	3396000	2547	146	2395	5015	10346;10347	10347		2	9606
STFETEHAGQR	0	1	Unmodified	1261.5687	0.56872807	198	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1.5	0.5	1	1				12.41	12.41	2	0.0074743	2520	DP1061-7	91.087	66.866			NaN	NaN	NaN	0	0	Median	9625700	0	9625700	2548	198	2396	5016;5017	10348;10349	10349		2	9606
STFNDVEK	1	0	Unmodified	938.43453	0.434526	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				13.032	13.032	2	0.039413	3290	DP1061-7	75.738	43.128			NaN	NaN	NaN	0	0	Median	6209000	0	6209000	2549	489	2397	5018	10350	10350		1	9606
STGEAFVQFASQEIAEK	1	0	Unmodified	1840.8843	0.88430813	153	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	4	0				1		20.785	20.785	2	1.4786000000000002E-30	13122	DP1061-9	173.59	173.59			2.8744	3.0047	NaN	1	0	Median	59847000	14724000	45123000	2550	153	2398	5019	10351;10352;10353;10354	10352		4	9606
STGLELETPSLVPVKK	2	0	Unmodified	1696.9611	0.96110188	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				17.853	17.853	3	0.001419	9421	DP1061-7	85.976	68.191			NaN	NaN	NaN	0	0	Median	18944000	0	18944000	2551	454	2399	5020	10355;10356	10356		2	9606
STLEPVEK	1	0	Unmodified	901.47566	0.47566253	108;128	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			12.821	12.821	2	0.0086371	3147	DP1061-8	89.752	43.737			9.5939	10.248	NaN	1	0	Median	546460000	52396000	494070000	2552	128;108	2400	5021	10357;10358;10359	10358		3	9606
STLIQCLIR	0	1	Unmodified	1102.6169	0.61686423	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	4	0				1		19.486	19.486	2	0.01057	11576	DP1061-9	98.418	69.691			NaN	NaN	NaN	0	0	Median	5583900	0	5583900	2553	341	2401	5022	10360	10360		1	9606
STLVGHDTFTK	1	0	Unmodified	1204.6088	0.60880197	24	CON__Streptavidin			yes	yes	0	0	0	4.5	1.17	1	1		1	13	19.312	19.312	2	6.3152E-18	5090	DP1061-10	217.66	131.53		+	NaN	NaN	NaN	0	0	Median	1651699999.9999998	1651699999.9999998	0	2554	24	2402	5023;5024;5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035;5036;5037;5038	10361;10362;10363;10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390	10376		30	
STMQELNSR	0	1	Unmodified	1064.4921	0.49205765	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				13.257	13.257	2	0.00038802	2901	DP1061-6	148.99	101.33		+	NaN	NaN	NaN	0	0	Median	49734000	49734000	0	2555	19	2403	5039;5040	10391;10392;10393;10394	10391		4	9606
STNENANTPAAR	0	1	Acetyl (Protein N-term)	1286.5851	0.58510641	210	P52292	KPNA2	Importin subunit alpha-1	yes	yes	1	0	0	3	0			1			12.916	12.916	2	0.0001249	3332	DP1061-8	139.38	92.92			NaN	NaN	NaN	0	0	Median	8499000	0	8499000	2556	210	2404	5041	10395;10396	10396		2	9606
STNGDTFLGGEDFDQALLR	0	1	Unmodified	2054.9545	0.95451296	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.641	21.641	2	7.1682E-32	13325	DP1061-8	174.95	158.72			2.0021	2.1491	NaN	1	0	Median	43900000	14724000	29176000	2557	166	2405	5042	10397;10398;10399;10400	10397		4	9606
STTTGHLIYK	1	0	Unmodified	1119.5924	0.59242362	263	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.5	1.5	1			1		12.934	12.934	2	0.0015932	3216	DP1061-9	106.68	65.235			2.2549	2.4374	4.2467	2	0	Median	54514000	15917000	38597000	2558	263	2406	5043;5044	10401;10402;10403;10404;10405;10406	10404		6	9606
STVALTAAR	0	1	Unmodified	888.50288	0.50288033	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				13.427	13.427	2	0.0038337	3949	DP1061-7	115.49	60.718			NaN	NaN	NaN	0	0	Median	44478000	0	44478000	2559	485	2407	5045	10407;10408	10407		2	9606
STVAQLVK	1	0	Unmodified	844.50182	0.5018177	144	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			14.307	14.307	2	0.052692	5161	DP1061-8	68.915	1.8801			1.1689	1.2485	NaN	1	0	Median	54397000	22749000	31648000	2560	144	2408	5046	10409	10409		1	9606
STVLTNGEAAMQSSNSESK	1	0	Oxidation (M)	1955.8742	0.87421372	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	1	0	3	0			1			13.466	13.466	2	1.1684E-11	3997	DP1061-8	147.7	100.71			NaN	NaN	NaN	0	0	Median	5212600	0	5212600	2561	515	2409	5047	10410;10411	10411	629	2	9606
STVLTPMFVETQASQGTLQTR	0	1	Oxidation (M)	2310.1526	0.15256084	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					19.148	19.148	2	9.3191E-05	9489	DP1061-6	108.36	63.082			NaN	NaN	NaN	0	0	Median	0	0	0	2562	271	2410	5048	10412	10412	346	1	9606
STYEQVDLIGK	1	0	Unmodified	1251.6347	0.63468237	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				17.098	17.098	2	0.0018081	8402	DP1061-7	114.86	65.322			NaN	NaN	NaN	0	0	Median	37808000	0	37808000	2563	508	2411	5049	10413;10414	10414		2	9606
STYEQVDLIGKK	2	0	Unmodified	1379.7296	0.72964538	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				15.384	15.384	3	0.0023102	6104	DP1061-7	85.813	54.923			NaN	NaN	NaN	0	0	Median	47947000	0	47947000	2564	508	2412	5050	10415;10416	10415		2	9606
SVAHGQAPEMPLVK	1	0	Oxidation (M)	1478.7551	0.75514863	364	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	0	3	0			1			13.032	13.032	3	0.030944	3534	DP1061-8	56.286	22.525			NaN	NaN	NaN	0	0	Median	8204800	0	8204800	2565	364	2413	5051	10417	10417		1	9606
SVDETLR	0	1	Unmodified	818.4134	0.41339662	293	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	yes	no	0	0	0	5	0					1	12.726	12.726	2	0.00038684	3317	DP1061-10	110.63	64.681			4.179	4.0816	NaN	1	0	Median	61451000	11031000	50420000	2566	293	2414	5052	10418;10419;10420;10421	10418		4	9606
SVDETTQAMAFDGIIFQGQSLK	1	0	Oxidation (M)	2401.1471	0.14714111	145	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	1	0	3.5	0.5			1	1		21.566	21.566	2	4.4701E-47	13293	DP1061-8	245.19	213.2			NaN	NaN	NaN	0	0	Median	15265000	0	15265000	2567	145	2415	5053;5054	10422;10423;10424;10425;10426;10427	10423	194	6	9606
SVEVEGYGSK	1	0	Unmodified	1053.4979	0.49785453	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	2	0		1				13.95	13.95	2	0.006242	4488	DP1061-7	101.65	44.599			NaN	NaN	NaN	0	0	Median	7333500	0	7333500	2568	397	2416	5055	10428;10429	10429		2	9606
SVFALTNGIYPHK	1	0	Unmodified	1445.7667	0.76669959	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				2		18.272	18.272	2;3	3.0161E-05	9874	DP1061-9	124.12	89.941			NaN	NaN	NaN	0	0	Median	51115000	0	51115000	2569	287	2417	5056;5057	10430;10431;10432;10433;10434;10435	10430		6	9606
SVFGHICSHLTPR	0	1	Unmodified	1509.7511	0.7510663	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				16.14	16.14	3	0.0046033	7129	DP1061-7	84.892	62.171			NaN	NaN	NaN	0	0	Median	11554000	0	11554000	2570	466	2418	5058	10436;10437	10437		2	9606
SVGDGETVEFDVVEGEK	1	0	Unmodified	1794.816	0.81595379	262;126	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	0	3.25	0.433			3	1		18.709	18.709	2	9.501E-08	10409	DP1061-9	154.07	115.43			NaN	NaN	NaN	0	0	Median	95154000	0	95154000	2571	126;262	2419	5059;5060;5061;5062	10438;10439;10440;10441;10442	10441		5	9606
SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK	2	0	Unmodified	3471.6642	0.66415118	262	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		19.198	19.198	3	1.854E-10	11350	DP1061-9	110.23	90.847			NaN	NaN	NaN	0	0	Median	62351000	0	62351000	2572	262	2420	5063	10443;10444;10445;10446;10447	10445		5	9606
SVHCQAGDTVGEGDLLVELE	0	0	Unmodified	2126.979	0.97901315	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		20.697	20.697	2	1.0451E-11	13024	DP1061-9	147.7	110.55			NaN	NaN	NaN	0	0	Median	0	0	0	2573	86	2421	5064;5065;5066	10448;10449;10450;10451;10452;10453;10454;10455;10456	10455		9	9606
SVHSSVPLLNSK	1	0	Unmodified	1266.6932	0.6932003	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.86	0.639	2	4	1			14.495	14.495	2;3	4.6383E-07	4057	DP1061-6	159.34	159.34			0.79722	0.88227	4.2782	4	0	Median	487240000	261830000	225410000	2574	309	2422	5067;5068;5069;5070;5071;5072;5073	10457;10458;10459;10460;10461;10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473	10461		17	9606
SVHSSVPLLNSKDPIDR	1	1	Unmodified	1862.985	0.98502522	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.59	0.974	11	4		2		18.061	18.061	2;3;4	2.769E-44	12094	DP1061-6	238.12	199.31			0.73749	0.79403	7.0788	12	0	Median	616890000	340020000	276870000	2575	309	2423	5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090	10474;10475;10476;10477;10478;10479;10480;10481;10482;10483;10484;10485;10486;10487;10488;10489;10490;10491;10492;10493;10494;10495;10496;10497;10498;10499;10500;10501;10502;10503;10504;10505;10506;10507;10508;10509;10510;10511;10512;10513;10514;10515;10516;10517;10518	10503		44	9606
SVNDQPSGNLPFLKPDDIQYFDK	2	0	Unmodified	2636.2758	0.27584709	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				20.894	20.894	3	0.0031717	12969	DP1061-7	81.017	48.469			NaN	NaN	NaN	0	0	Median	6226300	0	6226300	2576	64	2424	5091	10519;10520	10519		2	9606
SVPTTQCLDNSK	1	0	Unmodified	1348.6293	0.62927941	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		13.702	13.702	2	0.00039266	4045	DP1061-7	120.45	93.338			NaN	NaN	NaN	0	0	Median	35368000	0	35368000	2577	182	2425	5092;5093;5094	10521;10522;10523;10524;10525;10526	10524		6	9606
SVQEGENPDDGVR	0	1	Unmodified	1400.6168	0.61680047	178	P42696	RBM34	RNA-binding protein 34	yes	yes	0	0	0	4	0				1		12.932	12.932	2	0.00079231	3213	DP1061-9	112.83	59.083			NaN	NaN	NaN	0	0	Median	3157800	0	3157800	2578	178	2426	5095	10527;10528	10527		2	9606
SVTLGYLFSQGHLTR	0	1	Unmodified	1677.8839	0.88385462	222	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	2	0		1				19.602	19.602	2	5.1528E-05	11368	DP1061-7	145.6	102.76			NaN	NaN	NaN	0	0	Median	6801000	0	6801000	2579	222	2427	5096	10529;10530;10531;10532	10531		4	9606
SVTNEDVTQEELGGAK	1	0	Unmodified	1675.7901	0.79007339	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.83	1.46	1		1	1	3	16.25	16.25	2	2.1904E-49	6288	DP1061-9	205.07	205.07			0.98545	1.0036	1.5216	2	0	Median	73630000	39880000	33750000	2580	87	2428	5097;5098;5099;5100;5101;5102	10533;10534;10535;10536;10537;10538;10539;10540;10541;10542	10539		10	9606
SVTWPEEGK	1	0	Unmodified	1031.4924	0.49237523	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				15.693	15.693	2	0.054552	6527	DP1061-7	71.379	39.025			NaN	NaN	NaN	0	0	Median	9330800	0	9330800	2581	454	2429	5103	10543	10543		1	9606
SVVCSDVEQQVIVIEEEKK	2	0	Unmodified	2217.1199	0.11986372	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	2	0		1				18.877	18.877	3	3.9316E-12	10357	DP1061-7	142.3	97.077			NaN	NaN	NaN	0	0	Median	9832000	0	9832000	2582	396	2430	5104	10544	10544		1	9606
SVVEFLQGYIGVPHGGFPEPFR	0	1	Unmodified	2431.2325	0.23246614	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.67	0.943		2		1		23.219	23.219	2;3	4.8826E-11	15702	DP1061-7	110.33	110.33			0.8181	0.90108	16.263	2	0	Median	16407000	8721900	7685000	2583	116	2431	5105;5106;5107	10545;10546;10547;10548;10549;10550;10551	10545		7	9606
SVVGLDVGSQSCYIAVAR	0	1	Acetyl (Protein N-term)	1921.9568	0.95676156	436	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	1	0	0	2	0		1				22.5	22.5	2	0.001486	14940	DP1061-7	95.183	43.897			NaN	NaN	NaN	0	0	Median	0	0	0	2584	436	2432	5108	10552	10552		1	9606
SWVQCGISMK	1	0	Oxidation (M)	1210.5475	0.54746404	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	2	0		1				15.874	15.874	2	0.011448	6780	DP1061-7	86.882	39.887			NaN	NaN	NaN	0	0	Median	8008300	0	8008300	2585	396	2433	5109	10553	10553	493	1	9606
SYCAEIAHNVSSK	1	0	Unmodified	1464.6667	0.66672755	257	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					1	20.604	20.604	2	4.8536E-05	9499	DP1061-10	129.74	90.563			NaN	NaN	NaN	0	0	Median	8719300	0	8719300	2586	257	2434	5110	10554;10555	10555		2	9606
SYGLGSEQR	0	1	Unmodified	995.46722	0.46722311	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				13.689	13.689	2	0.015963	4123	DP1061-7	88.948	55.432			NaN	NaN	NaN	0	0	Median	6685400	0	6685400	2587	489	2435	5111	10556;10557	10557		2	9606
SYLNMDAIMEAIK	1	0	2 Oxidation (M)	1529.7106	0.7105662	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	0	3	0			1			18.432	18.432	2	0.0077278	9589	DP1061-8	63.408	28.606			1.0675	1.1402	NaN	1	0	Median	52346000	22481000	29865000	2588	86	2436	5112	10558;10559;10560;10561;10562;10563	10562	98;99	6	9606
SYLNMDAIMEAIK	1	0	Oxidation (M)	1513.7157	0.71565158	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.723	20.723	2	0.031777	12259	DP1061-8	72.652	29.37			NaN	NaN	NaN	0	0	Median	9394500	9394500	0	2589	86	2436	5113	10564	10564	98;99	1	9606
SYLNMDAIMEAIKK	2	0	2 Oxidation (M)	1657.8055	0.80552922	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	1	3	0			1			17.11	17.11	3	0.0079078	7743	DP1061-8	56.569	56.569			0.88694	1.0124	NaN	1	0	Median	55593000	26134000	29460000	2590	86	2437	5114	10565;10566;10567;10568	10565	98;99	4	9606
SYLNMDAIMEAIKK	2	0	Oxidation (M)	1641.8106	0.8106146	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			1			19.221	19.221	3	0.0064662	10339	DP1061-8	64.244	64.244			0.7952	0.90768	NaN	1	0	Median	31076000	13854000	17222000	2591	86	2437	5115	10569	10569	98;99	1	9606
SYSQSSNLFR	0	1	Unmodified	1187.5571	0.55710075	127	P17028	ZNF24	Zinc finger protein 24	yes	yes	0	0	0	4	0				1		16.005	16.005	2	0.012938	6980	DP1061-9	88.177	46.473			NaN	NaN	NaN	0	0	Median	3887600	0	3887600	2592	127	2438	5116	10570	10570		1	9606
TAAENDFVTLKK	2	0	Unmodified	1335.7034	0.70343063	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2	1	1		1			14.829	14.829	2;3	0.00042265	5765	DP1061-8	107.97	79.735		+	NaN	NaN	NaN	0	0	Median	25316000	25316000	0	2593	20	2439	5117;5118	10571;10572;10573;10574	10573		4	9606
TAAENVCYTLINVPMDSEPPSEISLK	1	0	Acetyl (Protein N-term);Oxidation (M)	2935.3831	0.38309064	215	P53618	COPB1	Coatomer subunit beta	yes	yes	1	1	0	2	0		1				23.293	23.293	3	0.023369	15762	DP1061-7	57.316	33.065			NaN	NaN	NaN	0	0	Median	0	0	0	2594	215	2440	5119	10575	10575	280	1	9606
TAAFALPVLER	0	1	Unmodified	1186.671	0.67100829	448	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	2	0		1				20.233	20.233	2	0.0065544	12116	DP1061-7	91.867	64.729			NaN	NaN	NaN	0	0	Median	7596800	0	7596800	2595	448	2441	5120	10576	10576		1	9606
TAEEENPEHVEIQK	1	0	Unmodified	1651.7689	0.76894402	30	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2	0		1				13.494	13.494	2	0.00012356	3868	DP1061-7	119.39	78.222			NaN	NaN	NaN	0	0	Median	3558000	0	3558000	2596	30	2442	5121	10577;10578	10578		2	9606
TAEEVAALIR	0	1	Unmodified	1071.5924	0.59242362	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					17.589	17.589	2	0.0032926	7871	DP1061-6	112.41	51.439			NaN	NaN	NaN	0	0	Median	8419200	0	8419200	2597	387	2443	5122	10579;10580	10579		2	9606
TAILVGGMSTQK	1	0	Oxidation (M)	1220.6435	0.64347291	484	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	1	0	2	0		1				14.118	14.118	2	0.047108	4638	DP1061-7	67.704	15.301			NaN	NaN	NaN	0	0	Median	6683300	0	6683300	2598	484	2444	5123	10581	10581		1	9606
TAITVEHLAIK	1	0	Unmodified	1194.6972	0.69722304	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		2				15.819	15.819	2;3	0.011346	6695	DP1061-7	87.806	53.718			NaN	NaN	NaN	0	0	Median	101920000	0	101920000	2599	508	2445	5124;5125	10582;10583;10584	10583		3	9606
TALLGGGQR	0	1	Unmodified	871.48756	0.48756462	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	13.758	13.758	2	0.0024	3888	DP1061-8	104.45	64.345			0.99137	1.0474	8.0995	4	0	Median	718430000	357900000	360520000	2600	87	2446	5126;5127;5128;5129	10585;10586;10587;10588;10589;10590;10591;10592;10593;10594;10595	10590		11	9606
TAPGMGDQSGCYR	0	1	Oxidation (M)	1414.5605	0.56054792	476	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	yes	no	0	1	0	4	0				2		12.595	12.595	2	0.0029905	2872	DP1061-9	102.52	68.648			NaN	NaN	NaN	0	0	Median	0	0	0	2601	476	2447	5130;5131	10596;10597	10597	574	2	9606
TAQCFLR	0	1	Unmodified	894.43817	0.43817159	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					14.628	14.628	2	0.036388	4490	DP1061-6	77.748	45.278			NaN	NaN	NaN	0	0	Median	11944000	0	11944000	2602	387	2448	5132	10598;10599	10598		2	9606
TAQEVETYRR	0	2	Unmodified	1251.6208	0.62076364	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			2			12.505	12.505	2;3	0.0011104	2812	DP1061-8	104.01	58.855			NaN	NaN	NaN	0	0	Median	128060000	0	128060000	2603	130	2449	5133;5134	10600;10601;10602	10601		3	9606
TAQGLPGTSNSNSSR	0	1	Unmodified	1475.6964	0.69644778	525	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	1.5	0.5	1	1				12.803	12.803	2	7.6383E-05	2427	DP1061-6	118.87	89.092			NaN	NaN	NaN	0	0	Median	7725000	0	7725000	2604	525	2450	5135;5136	10603;10604;10605;10606;10607	10603		5	9606
TAQIMFQAYGDK	1	0	Oxidation (M)	1387.6442	0.6442012	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				16.696	16.696	2	8.1754E-07	6536	DP1061-6	131.42	131.42			0.89949	0.97342	3.9813	2	0	Median	981360000	512590000	468780000	2605	309	2451	5137;5138;5139	10608;10609;10610;10611;10612;10613;10614;10615	10609	410	8	9606
TAQIMFQAYGDK	1	0	Unmodified	1371.6493	0.64928657	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.782	17.782	2	6.3007E-11	7916	DP1061-6	147.3	147.3			0.89642	1.002	NaN	1	0	Median	191640000	98526000	93118000	2606	309	2451	5140	10616;10617;10618;10619	10617		4	9606
TATQLAVNK	1	0	Unmodified	944.5291	0.52909508	461	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			12.542	12.542	2	0.02179	2959	DP1061-8	82.671	41.169			NaN	NaN	NaN	0	0	Median	14927000	0	14927000	2607	461	2452	5141	10620	10620		1	9606
TAVAPIER	0	1	Unmodified	855.48142	0.48141661	85;118	P05141;P12235;Q9H0C2;P12236	SLC25A5;SLC25A4;SLC25A31;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	1	0	1					13.057	13.057	2	0.0019513	2729	DP1061-6	107.9	77.283			2.2275	2.4749	NaN	1	0	Median	31738000	9935300	21803000	2608	85;118	2453	5142	10621;10622;10623;10624	10621		4	9606
TAVCDIPPR	0	1	Unmodified	1027.5121	0.51206481	265;98;328;81;368	P07437;A6NNZ2;P68371;Q9BVA1;Q13885;Q3ZCM7;P04350	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB8;TUBB4A	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain;Tubulin beta-4A chain	no	no	0	0	0	3.67	0.471			1	2		14.504	14.504	2	0.0032614	4413	DP1061-8	99.139	79.435			3.6908	3.9379	1.8007	2	0	Median	146520000	21701000	124820000	2609	98;265;328;368;81	2454	5143;5144;5145	10625;10626;10627;10628;10629;10630	10626		6	9606
TAVETAVLLLR	0	1	Unmodified	1184.7129	0.71287311	195	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			20.304	20.304	2	0.0025362	11661	DP1061-8	111.46	70.026			NaN	NaN	NaN	0	0	Median	12031000	0	12031000	2610	195	2455	5146	10631;10632	10631		2	9606
TAVSGIRPENLK	1	1	Unmodified	1283.7197	0.7197494	483	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	1	3	0			1			14.07	14.07	2	0.0012969	4769	DP1061-8	124.67	79.915			NaN	NaN	NaN	0	0	Median	8210500	0	8210500	2611	483	2456	5147	10633;10634	10634		2	9606
TAVVVGTITDDVR	0	1	Unmodified	1344.7249	0.72489436	294	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					8	26.157	26.157	2	1.1044999999999998E-22	9912	DP1061-10	225.22	158.26			NaN	NaN	NaN	0	0	Median	56128000	0	56128000	2612	294	2457	5148;5149;5150;5151;5152;5153;5154;5155	10635;10636;10637;10638;10639;10640;10641;10642;10643;10644;10645;10646;10647;10648;10649;10650;10651;10652	10642		18	9606
TCNCETEDYGEK	1	0	Unmodified	1504.5446	0.54462308	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				12.623	12.623	2	0.0014722	2816	DP1061-7	112.83	91.835			NaN	NaN	NaN	0	0	Median	5190000	0	5190000	2613	281	2458	5156	10653;10654	10653		2	9606
TCPVQLWVDSTPPPGTR	0	1	Unmodified	1909.9356	0.93563219	82	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	4	0				1		19.831	19.831	2	0.0035641	12019	DP1061-9	99.941	70.253			NaN	NaN	NaN	0	0	Median	0	0	0	2614	82	2459	5157	10655	10655		1	9606
TCTTVAFTQVNSEDK	1	0	Unmodified	1699.7723	0.77231483	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4.67	0.471				1	2	16.012	16.012	2	6.3619E-05	6997	DP1061-9	119.39	56.066			NaN	NaN	NaN	0	0	Median	5496400	0	5496400	2615	242	2460	5158;5159;5160	10656;10657;10658	10658		3	9606
TCTTVAFTQVNSEDKGALAK	2	0	Unmodified	2140.047	0.047033132	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		15.986	15.986	3	1.6948E-12	6930	DP1061-9	155.92	128.49			NaN	NaN	NaN	0	0	Median	19896000	0	19896000	2616	242	2461	5161	10659;10660	10660		2	9606
TCVFEKENDPSVMR	1	1	Oxidation (M)	1726.7655	0.76545532	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	2	2				14.215	14.215	2;3	6.9234E-05	4758	DP1061-7	108.66	91.42			0.80787	0.87735	7.4383	4	0	Median	557810000	296960000	260850000	2617	309	2462	5162;5163;5164;5165	10661;10662;10663;10664;10665;10666;10667;10668;10669;10670;10671;10672;10673;10674;10675;10676	10671	411	16	9606
TCVFEKENDPSVMR	1	1	Unmodified	1710.7705	0.7705407	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				15.345	15.345	2;3	2.1957E-91	5082	DP1061-6	247.3	230.36			0.70817	0.76908	NaN	1	0	Median	52217000	11648000	40569000	2618	309	2462	5166;5167;5168	10677;10678;10679;10680;10681;10682	10678		6	9606
TDAAVSFAK	1	0	Acetyl (Protein N-term)	950.47091	0.4709115	85	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	3	2	1				1	17.9	17.9	1;2	1.7659E-10	7349	DP1061-10	153.08	87.837			2.7637	2.9105	14.721	2	0	Median	51240000	13583000	37656000	2619	85	2463	5169;5170	10683;10684;10685	10683		3	9606
TDCDIEDDR	0	1	Unmodified	1137.4244	0.42443159	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				13.03	13.03	2	1.9541E-16	2666	DP1061-6	171.73	162.52			0.84631	0.93794	2.5613	2	0	Median	52227000	26669000	25558000	2620	309	2464	5171;5172	10686;10687;10688;10689;10690;10691;10692	10689		7	9606
TDCDIEDDRLAAMFR	0	2	Oxidation (M)	1842.7876	0.78764732	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	1	1				17.7	17.7	2;3	0.00027745	9239	DP1061-7	85.554	85.554			0.83394	0.87501	4.3693	2	0	Median	184580000	100570000	84012000	2621	309	2465	5173;5174	10693;10694;10695;10696;10697;10698;10699	10696	412	7	9606
TDCDIEDDRLAAMFR	0	2	Unmodified	1826.7927	0.7927327	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				20.423	20.423	3	0.00042754	11303	DP1061-7	84.169	60.235			0.87909	0.93706	18.358	3	0	Median	59227000	34306000	24920000	2622	309	2465	5175;5176;5177	10700;10701;10702;10703;10704;10705;10706	10706		7	9606
TDCNHIFLNFVPTVIMDPSK	1	0	Oxidation (M)	2363.129	0.12898862	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				22.693	22.693	3	2.0412E-07	13438	DP1061-6	97.271	97.271			0.84723	0.91687	5.6708	2	0	Median	34968000	17048000	17920000	2623	309	2466	5178;5179;5180	10707;10708;10709;10710;10711;10712;10713;10714;10715;10716;10717;10718;10719	10710	413	13	9606
TDFGIFR	0	1	Unmodified	854.42865	0.42865276	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		18.939	18.939	1;2	1.5126E-05	9856	DP1061-8	126.68	99.359			0.93408	0.96885	13.451	3	0	Median	461110000	234020000	227100000	2624	501	2467	5181;5182;5183	10720;10721;10722;10723;10724;10725;10726;10727;10728;10729	10721		10	9606
TDITYPAGFMDVISIDK	1	0	Oxidation (M)	1900.9128	0.91283106	243	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	5	0					1	24.36	24.36	2	0.0058437	13411	DP1061-10	87.719	63.785			NaN	NaN	NaN	0	0	Median	12718000	0	12718000	2625	243	2468	5184	10730;10731;10732;10733;10734	10733	302	5	9606
TDKSILVSPTGPSR	1	1	Unmodified	1456.7886	0.78855725	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1		1		1		14.598	14.598	3	0.00059436	5315	DP1061-9	99.834	48.223			NaN	NaN	NaN	0	0	Median	39839000	0	39839000	2626	339	2469	5185;5186	10735;10736;10737	10737		3	9606
TDRGGDSIGETPTPGASK	1	1	Unmodified	1744.8228	0.8227705	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				12.975	12.975	3	0.017082	3345	DP1061-7	70.944	48.087			NaN	NaN	NaN	0	0	Median	4451600	0	4451600	2627	64	2470	5187	10738;10739	10739		2	9606
TDYNASVSVPDSSGPER	0	1	Unmodified	1779.7911	0.79113602	232	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.67	0.471			1	2		15.957	15.957	2	4.492E-07	6866	DP1061-9	136.01	104.42			NaN	NaN	NaN	0	0	Median	10299000	0	10299000	2628	232	2471	5188;5189;5190	10740;10741;10742;10743	10743		4	9606
TDYWLQPEIIVK	1	0	Unmodified	1503.7973	0.79733102	59	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	4	0				1		21.277	21.277	2	0.0053523	13897	DP1061-9	91.658	52.905			NaN	NaN	NaN	0	0	Median	4517200	0	4517200	2629	59	2472	5191	10744;10745	10745		2	9606
TEADAEKTFEEK	2	0	Unmodified	1396.6358	0.63580458	134	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0.632		1	3	1		13.64	13.64	2;3	1.0085E-34	3872	DP1061-9	201.09	165.82			24.356	27.398	249.88	3	0	Plateau	359040000	33736000	325300000	2630	134	2473	5192;5193;5194;5195;5196	10746;10747;10748;10749;10750;10751;10752;10753;10754	10754		9	9606
TEADVNPK	1	0	Acetyl (Protein N-term)	914.43453	0.434526	223	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	1	0	0	5	0					1	13.849	13.849	1	6.1695E-06	4382	DP1061-10	142.64	98.025			NaN	NaN	NaN	0	0	Median	3587600	0	3587600	2631	223	2474	5197	10755	10755		1	9606
TEDFIIDTLELR	0	1	Unmodified	1463.7508	0.75077476	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				22.562	22.562	2	7.1805E-17	14947	DP1061-7	161.51	161.51			4.0991	4.616	NaN	1	0	Median	8276200	1986000	6290200	2632	284	2475	5198	10756;10757;10758;10759	10756		4	9606
TEEGPTLSYGR	0	1	Unmodified	1208.5673	0.56733108	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				15.276	15.276	2	0.0031536	6060	DP1061-7	108.57	54.602			NaN	NaN	NaN	0	0	Median	8053900	0	8053900	2633	180	2476	5199	10760;10761	10761		2	9606
TEGSLEDWDIAVQK	1	0	Unmodified	1589.7573	0.7573167	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				19.468	19.468	2	0.0021834	11201	DP1061-7	97.214	64.691			NaN	NaN	NaN	0	0	Median	8236600	0	8236600	2634	347	2477	5200	10762	10762		1	9606
TEILPPFFK	1	0	Unmodified	1090.6063	0.60628277	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				20.826	20.826	2	0.021239	12823	DP1061-7	83.265	39.148			NaN	NaN	NaN	0	0	Median	5860400	0	5860400	2635	64	2478	5201	10763;10764	10763		2	9606
TEIMSPLYQDEAPK	1	0	Oxidation (M)	1636.7654	0.76543854	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	2	0		2				16.777	16.777	2	0.00010018	8071	DP1061-7	120.96	88.436			NaN	NaN	NaN	0	0	Median	0	0	0	2636	407	2479	5202;5203	10765;10766	10766	506	2	9606
TEMDWVLK	1	0	Oxidation (M)	1036.4899	0.48993238	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				1		17.233	17.233	2	0.019882	8605	DP1061-9	85.064	47.506			NaN	NaN	NaN	0	0	Median	24576000	0	24576000	2637	213	2480	5204	10767;10768	10767	272	2	9606
TEPTGSQPDR	0	1	Unmodified	1086.4942	0.49416614	367	Q3SY00	TSGA10IP	Testis-specific protein 10-interacting protein	yes	yes	0	0	0	3	0			1			21.159	21.159	1	0.0010955	12886	DP1061-8	31.871	5.9316			0.92157	1.0029	NaN	1	0	Median	18856000	10954000	7901400	2638	367	2481	5205	10769	10769		0	9606
TEQAISFAK	1	0	Acetyl (Protein N-term)	1035.5237	0.52367535	118	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	5	0					2	18.584	18.584	1;2	0.002635	7961	DP1061-10	88.177	49.214			NaN	NaN	NaN	0	0	Median	3865100	0	3865100	2639	118	2482	5206;5207	10770;10771	10770		2	9606
TEQLGLTR	0	1	Unmodified	916.49779	0.49779495	481	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	4	0				1		14.318	14.318	2	0.0037494	4887	DP1061-9	119.41	35.654			NaN	NaN	NaN	0	0	Median	19405000	0	19405000	2640	481	2483	5208	10772;10773	10772		2	9606
TESAVSQMQSVIELGR	0	1	Oxidation (M)	1749.8567	0.85671317	174	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	2	0		1				17.154	17.154	2	0.013592	8573	DP1061-7	80.312	36.768			NaN	NaN	NaN	0	0	Median	0	0	0	2641	174	2484	5209	10774	10774	221	1	9606
TESSSAQQVAVSR	0	1	Unmodified	1348.6583	0.65827136	143	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	4	0				1		12.636	12.636	2	3.1731E-05	2921	DP1061-9	133.91	89.535			NaN	NaN	NaN	0	0	Median	3441100	0	3441100	2642	143	2485	5210	10775;10776	10776		2	9606
TETVTSFR	0	1	Unmodified	939.46616	0.46616048	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.284	14.284	2	2.4662E-05	4031	DP1061-6	146.54	100.17			NaN	NaN	NaN	0	0	Median	13876000	0	13876000	2643	271	2486	5211	10777;10778	10777		2	9606
TEWETAAPAVAETPDIK	1	0	Acetyl (Protein N-term)	1869.8996	0.89962384	189	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	0	0	5	0					2	21.521	21.521	2	0.000248	10192	DP1061-10	102.73	72.795			NaN	NaN	NaN	0	0	Median	13268000	0	13268000	2644	189	2487	5212;5213	10779;10780;10781;10782	10780		4	9606
TFDPYIIIR	0	1	Unmodified	1136.623	0.62299547	322	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		20.389	20.389	2	0.017927	12709	DP1061-9	86.833	61.383			NaN	NaN	NaN	0	0	Median	9898300	0	9898300	2645	322	2488	5214	10783;10784	10784		2	9606
TFEDFVR	0	1	Unmodified	912.43413	0.43413207	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.575	17.575	2	8.5224E-10	8147	DP1061-6	144.29	103.61			0.89649	0.90429	10.834	2	0	Median	1334700000	701870000	632810000	2646	309	2489	5215;5216	10785;10786;10787;10788;10789;10790;10791;10792;10793;10794	10790		10	9606
TFEGHDASVLK	1	0	Unmodified	1202.5932	0.5931519	303	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					13.921	13.921	2	0.00026363	3668	DP1061-6	137.05	70.478			NaN	NaN	NaN	0	0	Median	5117200	0	5117200	2647	303	2490	5217	10795;10796	10795		2	9606
TFEVTPIR	0	1	Unmodified	961.52328	0.52328142	342	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					16.601	16.601	2	0.019226	6579	DP1061-6	92.47	48.354			NaN	NaN	NaN	0	0	Median	11522000	0	11522000	2648	342	2491	5218	10797	10797		1	9606
TFQVLGNLYSEGDCTYLK	1	0	Unmodified	2106.9932	0.99320665	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.275	21.275	2	7.7607E-51	12863	DP1061-8	254.89	208.82			NaN	NaN	NaN	0	0	Median	96682000	0	96682000	2649	455	2492	5219;5220	10798;10799;10800;10801	10799		4	9606
TFSFAIPLIEK	1	0	Unmodified	1264.7067	0.7067251	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2.5	0.5		1	1			22.157	22.157	2	0.0057066	14447	DP1061-7	93.556	75.294			NaN	NaN	NaN	0	0	Median	33847000	0	33847000	2650	508	2493	5221;5222	10802;10803;10804;10805	10803		4	9606
TFSLTEVR	0	1	Unmodified	951.50255	0.50254598	74	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	2	0		1				17.191	17.191	2	0.016812	8675	DP1061-7	96.492	43.855			NaN	NaN	NaN	0	0	Median	6460800	0	6460800	2651	74	2494	5223	10806;10807	10807		2	9606
TFTDCFNCLPIAAIVDEK	1	0	Unmodified	2112.986	0.98601278	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.9	0.539			2	7	1	24.112	24.112	2;3	5.6281E-30	16873	DP1061-9	233.52	195.91			97.754	102.18	NaN	1	0	Median	574660000	2450900	572210000	2652	163;233;234	2495	5224;5225;5226;5227;5228;5229;5230;5231;5232;5233	10808;10809;10810;10811;10812;10813;10814;10815;10816;10817;10818;10819;10820;10821;10822;10823;10824;10825;10826;10827;10828;10829;10830	10826		23	9606
TFYNQAIMSSK	1	0	Oxidation (M)	1304.6071	0.60708741	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		15.744	15.744	2	0.00019632	7221	DP1061-8	121.36	92.664			0.94153	1.0057	NaN	1	0	Median	167340000	94437000	72899000	2653	501	2496	5234;5235	10831;10832;10833;10834;10835;10836;10837;10838;10839;10840;10841	10836	606	11	9606
TFYNQAIMSSK	1	0	Unmodified	1288.6122	0.61217279	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			17.296	17.296	2	0.0012169	7496	DP1061-8	107.79	90.32			0.94398	1.0083	NaN	1	0	Median	52215000	32216000	19999000	2654	501	2496	5236;5237	10842;10843;10844;10845;10846;10847	10845		6	9606
TGAIVDVPVGEELLGR	0	1	Unmodified	1623.8832	0.88318591	144	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.751	20.751	2	1.2252999999999999E-28	12194	DP1061-8	184.31	184.31			1.1813	1.2669	NaN	1	0	Median	46371000	21173000	25198000	2655	144	2497	5238	10848;10849;10850;10851;10852;10853	10850		6	9606
TGGTVSDQALLFGDDDAGEGPSSLIR	0	1	Unmodified	2577.2195	0.21945443	484	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				21.428	21.428	2	5.5097E-55	13604	DP1061-7	249.89	218			NaN	NaN	NaN	0	0	Median	4984500	0	4984500	2656	484	2498	5239	10854;10855;10856;10857	10856		4	9606
TGICICFYQPR	0	1	Unmodified	1413.6533	0.65332609	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	3	0			1			19.59	19.59	2	0.021817	10756	DP1061-8	78.934	49.383			NaN	NaN	NaN	0	0	Median	7106700	0	7106700	2657	463	2499	5240	10858;10859;10860	10858		3	9606
TGISDVFAK	1	0	Unmodified	936.49165	0.49164694	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	1		1		1		17.37	17.37	2	0.0013455	9261	DP1061-7	111.17	62.606			23.089	24.191	NaN	1	0	Median	292030000	11405000	280620000	2658	134	2500	5241;5242	10861;10862;10863;10864;10865;10866	10864		6	9606
TGLFSATQTQEVENLVR	0	1	Unmodified	1891.964	0.96395543	421	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	3	0			2			20.878	20.878	2	0.0089321	12438	DP1061-8	90.731	53.305			NaN	NaN	NaN	0	0	Median	0	0	0	2659	421	2501	5243;5244	10867;10868	10868		2	9606
TGNFQVTELGR	0	1	Unmodified	1220.6149	0.61494998	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.855	16.855	2	0.0024253	6854	DP1061-6	147.12	106.13			NaN	NaN	NaN	0	0	Median	10566000	0	10566000	2660	66	2502	5245	10869	10869		1	9606
TGPAAAQVQVGK	1	0	Unmodified	1125.6142	0.6142217	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4.5	0.5				1	1	13.284	13.284	2	0.002317	3599	DP1061-9	106.88	69.153			NaN	NaN	NaN	0	0	Median	11062000	0	11062000	2661	318	2503	5246;5247	10870;10871;10872;10873	10873		4	9606
TGPTVTQVK	1	0	Unmodified	929.5182	0.51819605	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.33	1.25		1	1		1	12.497	12.497	2	0.0024419	2610	DP1061-7	118.74	77.714			NaN	NaN	NaN	0	0	Median	59345000	0	59345000	2662	318	2504	5248;5249;5250	10874;10875;10876;10877;10878	10876		5	9606
TGTAYTFFTPNNIK	1	0	Unmodified	1573.7777	0.77765821	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.327	19.327	2	1.0709E-05	10338	DP1061-8	133.42	105.65			NaN	NaN	NaN	0	0	Median	45997000	0	45997000	2663	130	2505	5251	10879;10880	10880		2	9606
TGVHHYSGNNIELGTACGK	1	0	Unmodified	2013.9327	0.93267208	254	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	3.67	1.89	1				2	21.107	21.107	3;4	0.0061602	13811	DP1061-10	81.854	51.438			NaN	NaN	NaN	0	0	Median	26126000	0	26126000	2664	254	2506	5252;5253;5254	10881;10882;10883	10882		3	9606
THEDIEAQIR	0	1	Unmodified	1210.5942	0.59421454	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				13.77	13.77	2	0.030807	4229	DP1061-7	76.17	47			NaN	NaN	NaN	0	0	Median	9156400	0	9156400	2665	64	2507	5255	10884	10884		1	9606
THINIVVIGHVDSGK	1	0	Unmodified	1587.8733	0.87328993	263	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	0				1		15.788	15.788	3	0.042534	6949	DP1061-9	48.216	48.216			2.1879	2.287	NaN	1	0	Median	21343000	6772100	14570000	2666	263	2508	5256	10885	10885		1	9606
TIAECLADELINAAK	1	0	Unmodified	1630.8236	0.82362212	189	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					3	26.633	26.633	2	0.00033374	15336	DP1061-10	108.37	62.4			NaN	NaN	NaN	0	0	Median	24887000	0	24887000	2667	189	2509	5257;5258;5259	10886;10887;10888;10889	10887		4	9606
TIAEQLAEK	1	0	Unmodified	1001.5393	0.53932542	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				14.9	14.9	2	0.01895	5653	DP1061-7	85.731	32.794			NaN	NaN	NaN	0	0	Median	16078000	0	16078000	2668	396	2510	5260	10890;10891	10891		2	9606
TIAFLLPMFR	0	1	Oxidation (M)	1223.6737	0.67365083	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	2	0		1				22.386	22.386	2	0.014517	14706	DP1061-7	83.265	50.794			NaN	NaN	NaN	0	0	Median	13702000	0	13702000	2669	396	2511	5261	10892;10893;10894	10892	494	3	9606
TIANMFGSSEK	1	0	Oxidation (M)	1199.5492	0.54923818	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				14.48	14.48	2	0.048434	4952	DP1061-7	67.334	41.229			NaN	NaN	NaN	0	0	Median	12504000	0	12504000	2670	512	2512	5262	10895	10895	622	1	9606
TIANMFGSSEKETIELSPTGRPK	2	1	Oxidation (M)	2508.253	0.25300316	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	2	2	0		1				16.461	16.461	3	0.0011544	7553	DP1061-7	113.08	73.697			NaN	NaN	NaN	0	0	Median	12683000	0	12683000	2671	512	2513	5263	10896;10897	10897	622	2	9606
TIAQGNLSNTDVQAAK	1	0	Unmodified	1629.8322	0.83221298	138	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		14.841	14.841	2	2.6636E-07	5582	DP1061-9	127.56	127.56			1.4277	1.4924	NaN	1	0	Median	17543000	8325900	9217400	2672	138	2514	5264	10898;10899	10899		2	9606
TIGDLSTLTASEIK	1	0	Unmodified	1447.777	0.77698951	380	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0		1				19.215	19.215	2	0.019258	10846	DP1061-7	83.081	46.748			NaN	NaN	NaN	0	0	Median	0	0	0	2673	380	2515	5265	10900	10900		1	9606
TIGGGDDSFNTFFSETGAGK	1	0	Unmodified	2006.8858	0.88576469	264;394;465	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.27	0.617			9	1	1	25.008	25.008	2	2.4349E-87	13259	DP1061-9	236.42	236.42			3.5624	3.7643	3.3791	2	0	Median	436310000	92222000	344090000	2674	264;394;465	2516	5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276	10901;10902;10903;10904;10905;10906;10907;10908;10909;10910;10911;10912;10913;10914;10915;10916;10917;10918;10919;10920;10921;10922;10923;10924;10925;10926	10922		26	9606
TIGISVDPR	0	1	Unmodified	956.5291	0.52909508	146	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					1	19.621	19.621	2	0.012468	8422	DP1061-10	93.162	51.053			NaN	NaN	NaN	0	0	Median	17550000	0	17550000	2675	146	2517	5277	10927;10928;10929	10927		3	9606
TIIFCETK	1	0	Unmodified	1010.5107	0.51066783	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				16.192	16.192	2	0.029642	7197	DP1061-7	78.77	56.999			NaN	NaN	NaN	0	0	Median	35343000	0	35343000	2676	508	2518	5278	10930	10930		1	9606
TIIGQQGDQSCANK	1	0	Unmodified	1518.7097	0.709655	156	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	2	0		2				13.068	13.068	2	0.00033244	3381	DP1061-7	114.86	85.905			NaN	NaN	NaN	0	0	Median	3363500	0	3363500	2677	156	2519	5279;5280	10931;10932	10931		2	9606
TILQGNYIQYSGDPLQDFTLMR	0	1	Oxidation (M)	2588.2581	0.25808854	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				22.796	22.796	2	0.00014462	15250	DP1061-7	113.4	82.006			NaN	NaN	NaN	0	0	Median	2102200	0	2102200	2678	289	2520	5281	10933;10934;10935	10934	363	3	9606
TIPLTDNTVIEEHLGK	1	0	Unmodified	1778.9414	0.94142907	385	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	5	0					1	24.922	24.922	3	0.016749	13794	DP1061-10	73.707	34.283			NaN	NaN	NaN	0	0	Median	0	0	0	2679	385	2521	5282	10936	10936		1	9606
TIPSWATLSASQLAR	0	1	Unmodified	1600.8573	0.85730551	375	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	3	0			1			20.585	20.585	2	0.00012917	12054	DP1061-8	116.71	65.763			NaN	NaN	NaN	0	0	Median	7833200	0	7833200	2680	375	2522	5283	10937;10938	10938		2	9606
TIQFVDWCPTGFK	1	0	Unmodified	1597.7599	0.75989966	394;465	Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.33	0.471			2	1		21.519	21.519	2	3.0182E-17	14073	DP1061-9	160.77	141.64			3.0114	3.1479	NaN	1	0	Median	119720000	29566000	90159000	2681	394;465	2523	5284;5285;5286	10939;10940;10941;10942;10943;10944;10945;10946;10947;10948;10949;10950	10949		12	9606
TIQGHLQSENFK	1	0	Unmodified	1400.7048	0.70482762	39	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				14.231	14.231	2	0.01743	4815	DP1061-7	80.737	16.317			NaN	NaN	NaN	0	0	Median	4666100	0	4666100	2682	39	2524	5287	10951	10951		1	9606
TIQTPIGSTWNTQR	0	1	Unmodified	1601.8162	0.81616898	474	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	2	0		1				17.602	17.602	2	0.00017281	9203	DP1061-7	150.09	89.569			NaN	NaN	NaN	0	0	Median	11406000	0	11406000	2683	474	2525	5288	10952;10953;10954	10954		3	9606
TIQVENSHLILTGAGALNK	1	0	Unmodified	1978.0847	0.084739268	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.53	0.819	13	2	4			20.899	20.899	2;3	1.8394E-114	7951	DP1061-6	276.34	238.34			0.88394	0.96829	11.568	12	0	Median	883130000	447110000	436020000	2684	309	2526	5289;5290;5291;5292;5293;5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307	10955;10956;10957;10958;10959;10960;10961;10962;10963;10964;10965;10966;10967;10968;10969;10970;10971;10972;10973;10974;10975;10976;10977;10978;10979;10980;10981;10982;10983;10984;10985;10986;10987;10988;10989;10990;10991;10992;10993;10994;10995;10996;10997;10998;10999;11000;11001;11002;11003;11004;11005;11006;11007	10961		53	9606
TISSYTAFSR	0	1	Unmodified	1131.556	0.55603811	387	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					16.417	16.417	2	0.022512	6360	DP1061-6	79.148	41.59			NaN	NaN	NaN	0	0	Median	8121100	0	8121100	2685	387	2527	5308	11008;11009	11008		2	9606
TITLEVEPSDTIENVK	1	0	Unmodified	1786.92	0.92002493	260	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	2.67	1.25	1		1	1		18.823	18.823	2	1.1266E-10	9105	DP1061-6	182.41	129.2			NaN	NaN	NaN	0	0	Median	42401000	0	42401000	2686	260	2528	5309;5310;5311	11010;11011;11012;11013;11014;11015	11010		6	9606
TIVYWGIGR	0	1	Unmodified	1063.5815	0.581465	214	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	2	0		1				19.521	19.521	2	0.034992	11221	DP1061-7	75.854	37.036			NaN	NaN	NaN	0	0	Median	5617600	0	5617600	2687	214	2529	5312	11016;11017	11016		2	9606
TKDHTLVQTIAR	1	1	Unmodified	1381.7678	0.76776223	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	0.816		1	1	1		13.489	13.489	2;3	2.1534E-06	3834	DP1061-9	189.24	128.55			NaN	NaN	NaN	0	0	Median	145710000	0	145710000	2688	339	2530	5313;5314;5315	11018;11019;11020;11021;11022;11023	11023		6	9606
TKVGDGDLSAEEIPENEVSLR	1	1	Unmodified	2257.1074	0.10738478	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				17.59	17.59	3	2.8408E-05	9088	DP1061-7	117.55	90.741			NaN	NaN	NaN	0	0	Median	30109000	0	30109000	2689	339	2531	5316	11024;11025	11024		2	9606
TKVGDGDLSAEEIPENEVSLRR	1	2	Unmodified	2413.2085	0.20849581	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2	0		2				16.554	16.554	3;4	2.2117E-13	7703	DP1061-7	157.57	139.55			NaN	NaN	NaN	0	0	Median	63427000	0	63427000	2690	339	2532	5317;5318	11026;11027;11028;11029	11027		4	9606
TLAAEMQELR	0	1	Oxidation (M)	1176.5809	0.58087266	412	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	1	0	2	0		1				14.651	14.651	2	0.022481	5301	DP1061-7	76.827	34.718			NaN	NaN	NaN	0	0	Median	5389200	0	5389200	2691	412	2533	5319	11030	11030	513	1	9606
TLADIIMEK	1	0	Oxidation (M)	1048.5474	0.54744726	329	Q13895	BYSL	Bystin	yes	yes	0	1	0	4	0				1		17.866	17.866	2	0.0043727	9563	DP1061-9	93.143	57.787			2.2787	2.382	NaN	1	0	Median	13768000	5785300	7982800	2692	329	2534	5320	11031;11032	11032	434	2	9606
TLATDILMGVLK	1	0	Oxidation (M)	1289.7265	0.72647426	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2.5	0.5		1	1			22.773	22.773	2	0.0016766	14814	DP1061-8	108.43	69.866			NaN	NaN	NaN	0	0	Median	19929000	0	19929000	2693	45	2535	5321;5322	11033;11034;11035;11036	11035	47	4	9606
TLDSGTSEIVK	1	0	Unmodified	1148.5925	0.5924832	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	4	0				1		14.648	14.648	2	0.015588	5344	DP1061-9	84.213	26.932			NaN	NaN	NaN	0	0	Median	9239100	0	9239100	2694	491	2536	5323	11037	11037		1	9606
TLFVLNVPPYCTEESLSR	0	1	Unmodified	2124.0561	0.056141256	551	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		21.79	21.79	2	2.669E-08	14423	DP1061-9	162.67	115.71			NaN	NaN	NaN	0	0	Median	3705700	0	3705700	2695	551	2537	5324	11038;11039;11040	11040		3	9606
TLLDIDNTR	0	1	Unmodified	1059.556	0.55603811	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	1		1		1		17.121	17.121	2	0.0085501	8426	DP1061-7	104.01	47.293		+	NaN	NaN	NaN	0	0	Median	77822000	77822000	0	2696	19	2538	5325;5326	11041;11042	11041		2	9606
TLLEEEYFR	0	1	Unmodified	1198.587	0.58700389	214	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	2	0		1				19.049	19.049	2	0.0086153	10628	DP1061-7	103.83	66.106			NaN	NaN	NaN	0	0	Median	6727200	0	6727200	2697	214	2539	5327	11043;11044	11043		2	9606
TLLEGEESR	0	1	Unmodified	1032.5088	0.50875357	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2	1	1		1			14.203	14.203	2	0.0011766	3866	DP1061-6	122.19	64.906		+	NaN	NaN	NaN	0	0	Median	422180000	422180000	0	2698	80	2540	5328;5329	11045;11046;11047	11045		3	9606
TLMNLGGLAVAR	0	1	Oxidation (M)	1230.6754	0.67544174	164	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	21.708	21.708	2	0.014939	10449	DP1061-10	81.95	16.645			NaN	NaN	NaN	0	0	Median	0	0	0	2699	164	2541	5330	11048	11048	209	1	9606
TLPAHSDPVSAVHFNR	0	1	Unmodified	1746.8802	0.88016622	231	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	4	0				1		15.208	15.208	4	0.016932	6110	DP1061-9	66.059	39.7			NaN	NaN	NaN	0	0	Median	12991000	0	12991000	2700	231	2542	5331	11049;11050	11049		2	9606
TLRDPSLPLLELQDIMTSVSGR	0	2	Oxidation (M)	2456.2945	0.29447405	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.75	0.829	2	1	1			22.781	22.781	3	1.3523E-16	13859	DP1061-6	137.64	137.64			0.71801	0.75337	5.7348	2	0	Median	60500000	31954000	28545000	2701	309	2543	5332;5333;5334;5335	11051;11052;11053;11054;11055;11056;11057;11058;11059;11060;11061;11062	11054	381	12	9606
TLSDYNIQK	1	0	Unmodified	1080.5451	0.54513908	260	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1	0	1					14.925	14.925	2	0.021846	4821	DP1061-6	76.064	57.802			6.6553	7.4393	NaN	1	0	Median	43924000	7824900	36099000	2702	260	2544	5336	11063	11063		1	9606
TLTAEEAEEEWER	0	1	Unmodified	1591.7002	0.70019575	157	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	4	0				1		18.219	18.219	2	6.2835E-05	9891	DP1061-9	155	123.72			NaN	NaN	NaN	0	0	Median	6738800	0	6738800	2703	157	2545	5337	11064;11065	11064		2	9606
TLTAEEAEEEWERR	0	2	Unmodified	1747.8013	0.80130678	157	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	4	0				1		17.533	17.533	3	0.00044081	8947	DP1061-9	96.745	73.347			NaN	NaN	NaN	0	0	Median	23365000	0	23365000	2704	157	2546	5338	11066;11067	11066		2	9606
TLTDEDEADQGGWLAAFWK	1	0	Unmodified	2151.9749	0.97491405	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		2				24.367	24.367	2	1.5132E-11	16961	DP1061-7	147.18	104.37			NaN	NaN	NaN	0	0	Median	1017000	0	1017000	2705	485	2547	5339;5340	11068;11069	11068		2	9606
TLTQGGVTYR	0	1	Unmodified	1094.572	0.57202253	325	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		14.289	14.289	2	0.0028772	4866	DP1061-9	96.668	96.668			1.1766	1.258	NaN	1	0	Median	44733000	19785000	24948000	2706	325	2548	5341	11070;11071	11071		2	9606
TLVLSNLSYSATEETLQEVFEK	1	0	Unmodified	2500.2585	0.2584657	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		2	2			24.017	24.017	2;3	4.5066E-47	16488	DP1061-7	246.66	210.89			NaN	NaN	NaN	0	0	Median	26837000	0	26837000	2707	134	2549	5342;5343;5344;5345	11072;11073;11074;11075;11076;11077;11078;11079;11080;11081;11082;11083	11074		12	9606
TNAENEFVTIK	1	0	Unmodified	1264.6299	0.62993134	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				16.551	16.551	2	0.00086704	6393	DP1061-6	142.83	89.052		+	NaN	NaN	NaN	0	0	Median	80103000	80103000	0	2708	80	2550	5346;5347	11084;11085;11086;11087	11084		4	9606
TNAENEFVTIKK	2	0	Unmodified	1392.7249	0.72489436	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.17	1.07	2	2	1	1		14.622	14.622	2;3	0.00021833	4372	DP1061-6	115.34	72.713		+	NaN	NaN	NaN	0	0	Median	309160000	309160000	0	2709	80	2551	5348;5349;5350;5351;5352;5353	11088;11089;11090;11091;11092;11093;11094;11095;11096;11097;11098;11099	11091		12	9606
TNEGVIEFR	0	1	Unmodified	1063.5298	0.52982336	314	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	0	0	0	4	0				1		16.565	16.565	2	0.011202	7746	DP1061-9	96.668	57.022			NaN	NaN	NaN	0	0	Median	7883800	0	7883800	2710	314	2552	5354	11100;11101	11101		2	9606
TNIIPVLEDAR	0	1	Unmodified	1239.6823	0.68230126	3	A6NHQ2	FBLL1	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	yes	yes	0	0	0	4	0				1		18.653	18.653	2	0.0017281	10391	DP1061-9	115.23	0			NaN	NaN	NaN	0	0	Median	43460000	0	43460000	2711	3	2553	5355	11102;11103	11102		2	9606
TNISTASATVSAATSTESISTRK	1	1	Unmodified	2283.1554	0.15539761	291	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	1	3	0			1			20.744	20.744	3	0.042773	12446	DP1061-8	40.622	13.351			NaN	NaN	NaN	0	0	Median	168360000	168360000	0	2712	291	2554	5356	11104	11104		1	9606
TNLVWDEVSGQWR	0	1	Unmodified	1588.7634	0.76340513	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		20.961	20.961	2	0.0023648	13439	DP1061-9	100.09	68.024			NaN	NaN	NaN	0	0	Median	6607600	0	6607600	2713	350	2555	5357	11105	11105		1	9606
TNRPPLSLSR	0	2	Unmodified	1139.6411	0.64110515	294	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					2	23.462	23.462	3	0.00089892	12039	DP1061-10	124.67	89.016			NaN	NaN	NaN	0	0	Median	0	0	0	2714	294	2556	5358;5359	11106;11107	11106		2	9606
TNSTFNQVVLKR	1	1	Unmodified	1405.7678	0.76776222	294	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					1	23.579	23.579	3	0.001121	11782	DP1061-10	91.313	71.709			NaN	NaN	NaN	0	0	Median	20926000	0	20926000	2715	294	2557	5360	11108;11109	11108		2	9606
TNTPVKEDWNVR	1	1	Unmodified	1457.7263	0.72629134	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				14.764	14.764	3	0.011788	5567	DP1061-7	61.235	36.705			1.002	1.077	NaN	1	0	Median	22355000	12122000	10233000	2716	269	2558	5361	11110	11110		1	9606
TNVVTMPTAHPR	0	1	Oxidation (M)	1338.6714	0.671419	318	Q13428	TCOF1	Treacle protein	yes	yes	0	1	0	2.5	0.5		1	1			12.43	12.43	3	0.000619	2745	DP1061-8	101.71	68.123			NaN	NaN	NaN	0	0	Median	88011000	0	88011000	2717	318	2559	5362;5363	11111;11112;11113	11113	423	3	9606
TNVVTMPTAHPR	0	1	Unmodified	1322.6765	0.67650438	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				14.008	14.008	3	0.031413	4507	DP1061-7	63.662	27.998			NaN	NaN	NaN	0	0	Median	5654700	0	5654700	2718	318	2559	5364	11114	11114		1	9606
TNYNDRYDEIR	0	2	Unmodified	1457.6535	0.65352033	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	5	0					1	21.881	21.881	3	0.053613	10751	DP1061-10	54.486	40.897			NaN	NaN	NaN	0	0	Median	5624200	0	5624200	2719	242	2560	5365	11115	11115		1	9606
TPAKVEDAADSATKPENLSSK	3	0	Unmodified	2158.0754	0.075356373	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2.5	0.5		1	1			13.647	13.647	3	1.4957E-16	4044	DP1061-7	188.56	145.18			NaN	NaN	NaN	0	0	Median	19954000	0	19954000	2720	182	2561	5366;5367	11116;11117;11118;11119	11117		4	9606
TPALVFEHVNNTDFK	1	0	Unmodified	1730.8628	0.86278482	266	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	4	0				2		17.786	17.786	2;3	3.7089E-05	9370	DP1061-9	144.28	95.093			NaN	NaN	NaN	0	0	Median	32189000	0	32189000	2721	266	2562	5368;5369	11120;11121;11122;11123;11124	11123		5	9606
TPANEKVEIQK	2	0	Unmodified	1255.6772	0.67721588	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			12.422	12.422	3	6.7259E-05	2724	DP1061-8	129.82	86.049			NaN	NaN	NaN	0	0	Median	45328000	0	45328000	2722	69	2563	5370	11125;11126	11126		2	9606
TPEVDDEALEKFDK	2	0	Unmodified	1634.7675	0.76754703	12	CON__P02754			yes	yes	0	0	1	3	1		1		1		16.924	16.924	2;3	0.001022	8259	DP1061-9	104.55	34.686		+	NaN	NaN	NaN	0	0	Median	8160800	8160800	0	2723	12	2564	5371;5372	11127;11128	11128		2	
TPGPGAQSALR	0	1	Unmodified	1053.5567	0.55670682	236	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	13.319	13.319	2	0.0080584	3849	DP1061-10	78.655	78.655			7.938	7.7529	NaN	1	0	Median	47922000	6228100	41694000	2724	236	2565	5373	11129;11130;11131;11132;11133	11130		5	9606
TPKEEAQSLEDLAGFK	2	0	Unmodified	1761.8785	0.87849447	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		2				18.652	18.652	2;3	1.7389E-06	10088	DP1061-7	145.61	102.8			NaN	NaN	NaN	0	0	Median	34421000	0	34421000	2725	182	2566	5374;5375	11134;11135;11136	11134		3	9606
TPKGPSSVEDIK	2	0	Unmodified	1256.6612	0.66123147	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		13.134	13.134	2;3	0.0088609	3456	DP1061-9	76.262	41.364			NaN	NaN	NaN	0	0	Median	19165000	0	19165000	2726	95	2567	5376;5377	11137;11138;11139	11137		3	9606
TPLENLVLQAK	1	0	Unmodified	1224.7078	0.70778773	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	2	0		1				19.09	19.09	2	0.0018819	10655	DP1061-7	114.51	83.944			NaN	NaN	NaN	0	0	Median	6222900	0	6222900	2727	397	2568	5378	11140;11141	11141		2	9606
TPLEPPPIVVVVMGPPK	1	0	Oxidation (M)	1785.011	0.011028964	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	1	0	4	0				1		20.592	20.592	2	0.039776	12941	DP1061-9	71.153	39.925			NaN	NaN	NaN	0	0	Median	4731800	0	4731800	2728	341	2569	5379	11142	11142		1	9606
TPLHEIALSIK	1	0	Unmodified	1220.7129	0.71287311	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				17.07	17.07	2	0.0011988	8379	DP1061-7	117.71	71.704			NaN	NaN	NaN	0	0	Median	14991000	0	14991000	2729	296	2570	5380	11143;11144	11144		2	9606
TPSSDVLVFDYTK	1	0	Unmodified	1470.7242	0.72422566	299;363	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	4	0				1		19.456	19.456	2	0.0012385	11560	DP1061-9	107.34	78.767			NaN	NaN	NaN	0	0	Median	16380000	0	16380000	2730	299;363	2571	5381	11145;11146	11146		2	9606
TPTSSPASSPLVAK	1	0	Unmodified	1341.714	0.71399532	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		14.347	14.347	2	1.1631E-18	4801	DP1061-7	159.94	111.14			40.246	42.166	NaN	1	0	Median	397370000	5140800	392230000	2731	339	2572	5382;5383;5384	11147;11148;11149;11150;11151;11152;11153;11154	11148		8	9606
TPVEEVPAAIAPFQGR	0	1	Unmodified	1680.8835	0.88352026	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				19.286	19.286	2	7.0188E-05	10936	DP1061-7	116.55	72.247			NaN	NaN	NaN	0	0	Median	0	0	0	2732	356	2573	5385	11155	11155		1	9606
TPVQYSQQQNSPQK	1	0	Unmodified	1631.7903	0.79034816	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		12.776	12.776	2	3.5573E-34	3141	DP1061-8	241.39	191.03			NaN	NaN	NaN	0	0	Median	48797000	0	48797000	2733	182	2574	5386;5387;5388;5389	11156;11157;11158;11159;11160;11161;11162;11163	11160		8	9606
TQASSSFQDSSQPAGK	1	0	Unmodified	1624.7329	0.73289286	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	3.5	1.12		1	1	1	1	12.898	12.898	2	3.3764E-11	3028	DP1061-7	190.85	164.81			NaN	NaN	NaN	0	0	Median	35429000	0	35429000	2734	184	2575	5390;5391;5392;5393	11164;11165;11166;11167;11168;11169;11170;11171	11166		8	9606
TQLLGQLR	0	1	Unmodified	927.55016	0.55016488	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1.5	0.5	1	1				16.397	16.397	2	0.024701	6253	DP1061-6	85.265	39.249			NaN	NaN	NaN	0	0	Median	19744000	0	19744000	2735	497	2576	5394;5395	11172;11173	11172		2	9606
TQLSLLPR	0	1	Unmodified	926.55492	0.5549159	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				17.41	17.41	2	0.045584	8953	DP1061-7	74.301	37.541			NaN	NaN	NaN	0	0	Median	11720000	0	11720000	2736	347	2577	5396	11174	11174		1	9606
TQPMTAQAASYR	0	1	Oxidation (M)	1339.619	0.61904908	453	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	1	0	3	0			1			12.827	12.827	2	0.0081785	3388	DP1061-8	73.841	59.543			1.3857	1.5078	NaN	1	0	Median	9982500	4624600	5358000	2737	453	2578	5397	11175;11176;11177	11177	533	3	9606
TQPSSGVDSAVGTLPATSPQSTSVQAK	1	0	Unmodified	2600.293	0.29295372	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.8	1.17		1	1	1	2	16.733	16.733	2	1.5641E-20	7968	DP1061-7	155.94	129.39			NaN	NaN	NaN	0	0	Median	7644500	0	7644500	2738	318	2579	5398;5399;5400;5401;5402	11178;11179;11180;11181;11182;11183;11184;11185	11182		8	9606
TQQAAQANITLQEQIEAIHK	1	0	Unmodified	2234.1655	0.16550878	361	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				17.898	17.898	3	0.035636	9557	DP1061-7	63.936	32.962			NaN	NaN	NaN	0	0	Median	0	0	0	2739	361	2580	5403	11186	11186		1	9606
TQSRPGGPPNPPGPSPK	1	1	Unmodified	1669.8536	0.85361712	78	O95785	WIZ	Protein Wiz	yes	yes	0	0	1	2	0		1				12.686	12.686	3	0.0046996	2935	DP1061-7	79.514	48.195			NaN	NaN	NaN	0	0	Median	3955200	0	3955200	2740	78	2581	5404	11187	11187		1	9606
TQSSASLAASYAAQQHPQAAASYR	0	1	Unmodified	2464.1731	0.17311336	453	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	4	0				1		16.024	16.024	3	5.2216E-22	7051	DP1061-9	138.82	138.82			1.1146	1.1917	NaN	1	0	Median	14752000	8087100	6664800	2741	453	2582	5405	11188;11189;11190;11191;11192;11193	11191		6	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Oxidation (M)	2783.2353	0.23532096	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			19.336	19.336	3	3.9704E-22	10389	DP1061-8	136.44	128.41			0.86458	0.9235	NaN	1	0	Median	76319000	41019000	35300000	2742	455	2583	5406	11194;11195;11196;11197;11198;11199	11196	548	6	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Unmodified	2767.2404	0.24040634	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.199	20.199	3	0.0010082	11487	DP1061-8	91.643	76.347			NaN	NaN	NaN	0	0	Median	12893000	12893000	0	2743	455	2583	5407	11200;11201	11200		2	9606
TSEIYVHR	0	1	Unmodified	1003.5087	0.50869399	484	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				12.621	12.621	2	1.2367E-05	2793	DP1061-7	152.63	103.27			NaN	NaN	NaN	0	0	Median	10364000	0	10364000	2744	484	2584	5408	11202	11202		1	9606
TSFFQALGITTK	1	0	Unmodified	1312.7027	0.70270235	90	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		21.549	21.549	2	1.5276E-17	14101	DP1061-9	169.93	169.93			27.944	29.21	NaN	1	0	Median	126770000	4894000	121880000	2745	90	2585	5409	11203;11204	11204		2	9606
TSIAIDTIINQK	1	0	Unmodified	1315.7347	0.73473076	144	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.548	18.548	2	0.036284	9500	DP1061-8	60.518	31.432			1.5146	1.6178	NaN	1	0	Median	15751000	6517700	9233600	2746	144	2586	5410	11205;11206	11206		2	9606
TSIIEAQYLR	0	1	Unmodified	1192.6452	0.64518747	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					17.883	17.883	2	0.0074237	8030	DP1061-6	96.668	60.287			NaN	NaN	NaN	0	0	Median	6677500	0	6677500	2747	340	2587	5411	11207;11208	11208		2	9606
TSLAQQLQR	0	1	Acetyl (Protein N-term)	1085.5829	0.58292157	492	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	1	0	0	1	0	1					18.627	18.627	2	0.0023158	8915	DP1061-6	98.523	49.962			NaN	NaN	NaN	0	0	Median	4178800	0	4178800	2748	492	2588	5412	11209;11210	11210		2	9606
TSLYSEDDCK	1	0	Unmodified	1216.4918	0.49178288	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.718	13.718	2	0.00056972	3424	DP1061-6	114.89	96.288			0.90343	1.0099	NaN	1	0	Median	14758000	7351400	7406200	2749	34	2589	5413	11211;11212;11213;11214	11212		4	9606
TSNEVQYDQR	0	1	Unmodified	1238.5527	0.55274365	321	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3.5	0.5			1	1		12.699	12.699	2	0.00011462	3108	DP1061-8	179.37	129.33			NaN	NaN	NaN	0	0	Median	35349000	0	35349000	2750	321	2590	5414;5415	11215;11216;11217;11218	11216		4	9606
TSQNSELNNMQDLVEDYK	1	0	Oxidation (M)	2142.9375	0.93754226	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1	0	1					17.029	17.029	2	0.00027279	7087	DP1061-6	111.3	67.403		+	NaN	NaN	NaN	0	0	Median	0	0	0	2751	20	2591	5416	11219	11219	17	1	9606
TSQNSELNNMQDLVEDYKK	2	0	Oxidation (M)	2271.0325	0.03250528	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	2.5	1.5	1			1		15.715	15.715	3	4.359E-12	5775	DP1061-6	149.86	126.49		+	NaN	NaN	NaN	0	0	Median	47929000	47929000	0	2752	20	2592	5417;5418	11220;11221;11222;11223;11224	11222	17	5	9606
TSQVGAASAPAK	1	0	Unmodified	1086.5669	0.56693715	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4.5	0.5				1	1	12.41	12.41	2	0.00026398	2904	DP1061-10	121.36	91.043			NaN	NaN	NaN	0	0	Median	27788000	0	27788000	2753	318	2593	5419;5420	11225;11226;11227;11228	11225		4	9606
TSSLDPNDQVAMGR	0	1	Oxidation (M)	1505.678	0.67802052	521	Q9NY61	AATF	Protein AATF	yes	yes	0	1	0	3	0			1			14.358	14.358	2	0.012161	5184	DP1061-8	80.014	36.572			NaN	NaN	NaN	0	0	Median	0	0	0	2754	521	2594	5421	11229	11229	633	1	9606
TSTAPAASPNVR	0	1	Unmodified	1170.5993	0.59929991	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	12.466	12.466	2	7.6231E-35	2526	DP1061-7	199.46	160.68			0.78913	0.81904	28.033	5	0	Median	1050799999.9999999	577890000	472930000	2755	116	2595	5422;5423;5424;5425;5426	11230;11231;11232;11233;11234;11235;11236;11237;11238;11239;11240;11241;11242;11243;11244;11245;11246;11247;11248	11239		19	9606
TSTTSSMVASAEQPR	0	1	Unmodified	1551.7199	0.71988533	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	5	0					4	15.553	15.553	2	0.010067	5773	DP1061-10	88.803	62.053			NaN	NaN	NaN	0	0	Median	8474700	0	8474700	2756	173	2596	5427;5428;5429;5430	11249;11250;11251;11252	11252		4	9606
TSTTSSMVASAEQPR	0	1	Oxidation (M)	1567.7148	0.71479996	173	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	4.5	0.5				1	1	12.761	12.761	2	0.00026322	2980	DP1061-9	108.56	79.608			NaN	NaN	NaN	0	0	Median	12017000	0	12017000	2757	173	2596	5431;5432	11253;11254;11255;11256	11255	220	4	9606
TSVTDFLR	0	1	Unmodified	937.4869	0.48689592	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	4	0				1		18.632	18.632	2	0.052076	10526	DP1061-9	72.789	35.695			NaN	NaN	NaN	0	0	Median	5949400	0	5949400	2758	407	2597	5433	11257	11257		1	9606
TTDGYLLR	0	1	Unmodified	937.4869	0.48689592	226	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		15.954	15.954	2	0.019648	6789	DP1061-9	91.906	91.906			NaN	NaN	NaN	0	0	Median	77056000	0	77056000	2759	226	2598	5434	11258;11259	11258		2	9606
TTEEQVQASTPCPR	0	1	Unmodified	1602.7308	0.73078437	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2.5	0.5		1	1			13.88	13.88	2	0.0095832	4504	DP1061-8	84.821	40.503			NaN	NaN	NaN	0	0	Median	14052000	0	14052000	2760	331	2599	5435;5436	11260;11261;11262;11263;11264	11263		5	9606
TTEYSKMKNMLLDLQNQK	3	0	2 Oxidation (M)	2216.0817	0.081704079	414	Q8N475	FSTL5	Follistatin-related protein 5	yes	yes	0	2	2	3	1		1		1		14.425	14.425	2	0.0079742	5233	DP1061-7	84.352	42.527			NaN	NaN	NaN	0	0	Median	0	0	0	2761	414	2600	5437;5438	11265;11266	11265	515;516	2	9606
TTGFGMIYDSLDYAK	1	0	Oxidation (M)	1696.7654	0.76543854	250	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	5	0					1	24.165	24.165	2	0.014353	12449	DP1061-10	77.124	42.623			NaN	NaN	NaN	0	0	Median	29351000	0	29351000	2762	250	2601	5439	11267	11267	311	1	9606
TTHFVEGGDAGNR	0	1	Unmodified	1359.6167	0.61674089	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	5	0					1	12.493	12.493	3	0.0012731	3044	DP1061-10	96.059	71.716			NaN	NaN	NaN	0	0	Median	8658200	0	8658200	2763	132	2602	5440	11268	11268		1	9606
TTHFVEGGDAGNREDQINR	0	2	Unmodified	2114.973	0.97295699	132	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	5	0					2	18.917	18.917	3	0.02133	4111	DP1061-10	67.605	38.593			NaN	NaN	NaN	0	0	Median	42837000	0	42837000	2764	132	2603	5441;5442	11269;11270;11271;11272	11269		4	9606
TTHYTPLACGSNPLKR	1	1	Unmodified	1814.9098	0.90975179	58	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	1	3	0			1			14.576	14.576	3	2.2947E-05	5450	DP1061-8	108.66	73.62			NaN	NaN	NaN	0	0	Median	9760600	0	9760600	2765	58	2604	5443	11273;11274	11274		2	9606
TTNFAGILSQGLR	0	1	Unmodified	1376.7412	0.74121312	104	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				20.379	20.379	2	0.00097866	12304	DP1061-7	110.54	68.192			NaN	NaN	NaN	0	0	Median	8629500	0	8629500	2766	104	2605	5444	11275;11276	11275		2	9606
TTPGKENFR	1	1	Acetyl (Protein N-term)	1090.5407	0.5407224	211	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	1	0	1	3	0			1			13.663	13.663	2	0.033995	4181	DP1061-8	60.118	16.349			NaN	NaN	NaN	0	0	Median	21545000	0	21545000	2767	211	2606	5445	11277	11277		1	9606
TTPNSGDVQVTEDAVR	0	1	Unmodified	1687.8013	0.80130678	157	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	4.83	0.373				1	5	15.824	15.824	2	1.6978E-07	6250	DP1061-9	158.04	68.237			NaN	NaN	NaN	0	0	Median	0	0	0	2768	157	2607	5446;5447;5448;5449;5450;5451	11278;11279;11280;11281;11282;11283	11283		6	9606
TTPSVVAFTADGER	0	1	Unmodified	1449.71	0.70997257	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.423	17.423	2	0.021125	8135	DP1061-8	65.395	42.816			1.6853	1.8123	NaN	1	0	Median	39249000	18403000	20846000	2769	166	2608	5452	11284	11284		1	9606
TTPSYVAFTDTER	0	1	Unmodified	1486.694	0.69398816	108;113;128	P17066;P48741;P0DMV9;P0DMV8;P11142;P54652	HSPA6;HSPA7;HSPA1B;HSPA1A;HSPA8;HSPA2	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3.17	0.373			5	1		26.183	26.183	2	7.5257E-05	8838	DP1061-9	123.11	88.357			NaN	NaN	NaN	0	0	Median	49698000	0	49698000	2770	128;108;113	2609	5453;5454;5455;5456;5457;5458	11285;11286;11287;11288;11289;11290;11291;11292;11293	11293		9	9606
TTQPSINESESDPFEVVRDDFK	1	1	Unmodified	2539.1714	0.1714416	395	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		2				20.211	20.211	3	0.019598	12121	DP1061-7	66.264	43.889			NaN	NaN	NaN	0	0	Median	0	0	0	2771	395	2610	5459;5460	11294;11295	11295		2	9606
TTQVPQFILDDFIQNDR	0	1	Unmodified	2049.0167	0.016719282	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2.5	0.5		1	1			23.107	23.107	2	0.0013433	15485	DP1061-7	101.75	73.787			NaN	NaN	NaN	0	0	Median	15174000	0	15174000	2772	296	2611	5461;5462	11296;11297;11298;11299	11297		4	9606
TTTVNIGSISTADGSALVK	1	0	Unmodified	1833.9684	0.96837211	444	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				1		18.604	18.604	2	1.4584E-07	10402	DP1061-9	131.86	72.434			NaN	NaN	NaN	0	0	Median	10215000	0	10215000	2773	444	2612	5463	11300;11301	11300		2	9606
TTVEYLIK	1	0	Unmodified	965.54335	0.54334816	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				16.782	16.782	2	0.0014526	6627	DP1061-6	111.04	61.446			0.86684	0.93809	6.0952	2	0	Median	1561899999.9999998	826240000	735630000	2774	309	2613	5464;5465	11302;11303;11304;11305;11306;11307;11308;11309	11305		8	9606
TTVQQEPLESGAK	1	0	Unmodified	1386.6991	0.69907354	198	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1	0	1					13.51	13.51	2	0.0011597	3181	DP1061-6	108.31	67.319			NaN	NaN	NaN	0	0	Median	2717300	0	2717300	2775	198	2614	5466	11310;11311	11311		2	9606
TTYLVLDEADRMLDMGFEPQIR	0	2	2 Oxidation (M)	2644.2513	0.2512886	130	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	1	3	0			1			20.841	20.841	3	0.0095896	12401	DP1061-8	68.168	42.758			NaN	NaN	NaN	0	0	Median	20970000	0	20970000	2776	130	2615	5467	11312	11312	173;174	1	9606
TVAGGAWTYNTTSAVTVK	1	0	Unmodified	1825.921	0.92102798	229	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	5	0					2	20.997	20.997	2	1.3943E-07	10291	DP1061-10	132.31	93.73			NaN	NaN	NaN	0	0	Median	13038000	0	13038000	2777	229	2616	5468;5469	11313;11314;11315;11316;11317;11318;11319	11315		7	9606
TVAIHSDVDASSVHVK	1	0	Unmodified	1663.8529	0.85294842	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.29	0.452			5	2		13.935	13.935	2;3;4	9.5173E-29	4559	DP1061-8	171.62	171.62			0.95979	1.0142	4.8403	4	0	Median	999220000	310180000	689040000	2778	86	2617	5470;5471;5472;5473;5474;5475;5476	11320;11321;11322;11323;11324;11325;11326;11327;11328;11329;11330;11331;11332;11333;11334;11335;11336	11327		17	9606
TVAIYSEQDTGQMHR	0	1	Oxidation (M)	1750.7944	0.79444726	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.44	1.07	2	3	2	2		13.966	13.966	2;3	4.5024E-09	4505	DP1061-8	141.71	141.71			0.96543	1.0263	5.4587	8	0	Median	1729299999.9999998	854100000	875200000	2779	116	2618	5477;5478;5479;5480;5481;5482;5483;5484;5485	11337;11338;11339;11340;11341;11342;11343;11344;11345;11346;11347;11348;11349;11350;11351;11352;11353;11354;11355;11356;11357;11358;11359;11360;11361;11362;11363;11364;11365;11366;11367;11368;11369;11370;11371	11363	162	35	9606
TVAIYSEQDTGQMHR	0	1	Unmodified	1734.7995	0.79953264	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.707	1	2	1			14.862	14.862	2;3	1.2191999999999999E-91	5500	DP1061-7	247.96	214.9			0.96458	1.0146	8.5352	4	0	Median	518490000	251130000	267360000	2780	116	2618	5486;5487;5488;5489	11372;11373;11374;11375;11376;11377;11378;11379;11380;11381;11382;11383	11379		11	9606
TVALWDLR	0	1	Unmodified	972.53927	0.53926584	299;363	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	4	0				1		19.831	19.831	2	0.0097085	12188	DP1061-9	108.46	37.548			NaN	NaN	NaN	0	0	Median	17895000	0	17895000	2781	299;363	2619	5490	11384	11384		1	9606
TVANLLSGK	1	0	Unmodified	901.52328	0.52328142	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0				1		16.054	16.054	2	0.0046201	6986	DP1061-9	113.66	26.477			NaN	NaN	NaN	0	0	Median	39257000	0	39257000	2782	318	2620	5491	11385;11386	11385		2	9606
TVAQSQQLETNSQR	0	1	Unmodified	1588.7805	0.78051176	172	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		12.943	12.943	2	9.9934E-05	3254	DP1061-9	160.38	104.92			NaN	NaN	NaN	0	0	Median	2556900	0	2556900	2783	172	2621	5492	11387;11388	11388		2	9606
TVASTAMNSQSSR	0	1	Unmodified	1338.6198	0.61977736	74	O95239;Q2VIQ3	KIF4A;KIF4B	Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B	yes	no	0	0	0	2	0		1				12.628	12.628	2	8.1028E-05	2801	DP1061-7	121.68	69.425			NaN	NaN	NaN	0	0	Median	2591300	0	2591300	2784	74	2622	5493	11389;11390	11389		2	9606
TVDATGKEIELTHR	1	1	Unmodified	1568.8158	0.81583463	50	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	1	3	1		1		1		13.768	13.768	3	0.0008501	4235	DP1061-9	94.781	59.104			NaN	NaN	NaN	0	0	Median	7983300	0	7983300	2785	50	2623	5494;5495	11391;11392;11393	11393		3	9606
TVDFTQDSNYLLTGGQDK	1	0	Unmodified	2000.9327	0.93271488	554	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				1		19.932	19.932	2	1.1159E-07	12141	DP1061-9	133.14	86.545			NaN	NaN	NaN	0	0	Median	4977300	0	4977300	2786	554	2624	5496	11394;11395	11395		2	9606
TVDSQGPTPVCTPTFLER	0	1	Unmodified	2003.9622	0.96224087	478	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	4	0				1		18.819	18.819	2	1.3398999999999998E-21	10717	DP1061-9	211.82	167.28			NaN	NaN	NaN	0	0	Median	11479000	0	11479000	2787	478	2625	5497	11396;11397;11398;11399	11397		4	9606
TVEALYK	1	0	Unmodified	822.44872	0.4487195	279	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		14.235	14.235	2	0.011134	4015	DP1061-6	86.086	3.8238			3.0177	3.262	5.1403	2	0	Median	27401000	6038200	21363000	2788	279	2626	5498;5499	11400;11401;11402;11403	11401		4	9606
TVELPLNKEEIER	1	1	Unmodified	1568.841	0.84098675	474	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	1	2	0		1				16.504	16.504	3	0.00063483	7632	DP1061-7	102.97	62.904			NaN	NaN	NaN	0	0	Median	9712500	0	9712500	2789	474	2627	5500	11404;11405	11404		2	9606
TVELSIPADPANLDSEAK	1	0	Unmodified	1868.9367	0.93673763	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.14	1.12	3	1	2	1		19.376	19.376	2;3	1.5868E-22	10641	DP1061-6	160.48	135.29			0.71896	0.78314	17.846	6	0	Median	860490000	486640000	373850000	2790	309	2628	5501;5502;5503;5504;5505;5506;5507	11406;11407;11408;11409;11410;11411;11412;11413;11414;11415;11416;11417;11418;11419;11420;11421;11422;11423;11424;11425;11426;11427;11428;11429	11412		23	9606
TVEVAVPADPANLDSEAK	1	0	Unmodified	1824.9105	0.91052288	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.888	17.888	2	3.1196E-11	8005	DP1061-6	136.99	115.74			0.88189	0.98579	NaN	1	0	Median	21115000	10171000	10944000	2791	34	2629	5508	11430;11431;11432;11433;11434;11435;11436;11437	11431		8	9606
TVFAEHISDECK	1	0	Unmodified	1434.6449	0.64492948	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	3	1.41	1			2		14.667	14.667	2;3	4.0087E-17	5281	DP1061-9	157.97	106.69			27.601	28.852	11.672	2	0	Median	141650000	7176100	134480000	2792	169	2630	5509;5510;5511	11438;11439;11440;11441;11442;11443;11444	11439		7	9606
TVFAEHISDECKR	1	1	Unmodified	1590.746	0.7460405	169	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				3		13.797	13.797	2;3;4	2.7507E-05	4263	DP1061-9	138.42	105.98			NaN	NaN	NaN	0	0	Median	119430000	0	119430000	2793	169	2631	5512;5513;5514	11445;11446;11447;11448;11449;11450	11446		6	9606
TVGATALPR	0	1	Unmodified	884.50797	0.50796571	205	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			14.002	14.002	2	0.013994	4672	DP1061-8	91.069	39.281			NaN	NaN	NaN	0	0	Median	20723000	0	20723000	2794	205	2632	5515	11451;11452	11451		2	9606
TVGIVGNQPK	1	0	Unmodified	1011.5713	0.57129425	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	13.781	13.781	2	0.0032473	4264	DP1061-10	93.195	50.326			0.85732	0.89822	1.5678	4	0	Median	627450000	338040000	289410000	2795	87	2633	5516;5517;5518;5519	11453;11454;11455;11456;11457;11458;11459;11460;11461;11462;11463;11464;11465;11466	11455		14	9606
TVGVEPAADGK	1	0	Unmodified	1042.5295	0.52948901	187	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	5	0					1	12.6	12.6	2	0.0002438	3136	DP1061-10	127.76	80.108			NaN	NaN	NaN	0	0	Median	78634000	0	78634000	2796	187	2634	5520	11467;11468	11468		2	9606
TVGVEPAADGKGVVVVIK	2	0	Unmodified	1737.0036	0.0036354	187	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	1	5	0					1	24.638	24.638	3	0.055481	13457	DP1061-10	56.407	20.062			NaN	NaN	NaN	0	0	Median	0	0	0	2797	187	2635	5521	11469	11469		1	9606
TVINFTMPNTIK	1	0	Oxidation (M)	1393.7275	0.72753689	448	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	1	0	2	0		1				17.65	17.65	2	0.043167	9358	DP1061-7	69.01	12.752			NaN	NaN	NaN	0	0	Median	7863900	0	7863900	2798	448	2636	5522	11470	11470		1	9606
TVINYDVAR	0	1	Unmodified	1049.5506	0.55055881	402	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				15.69	15.69	2	0.053185	6491	DP1061-7	71.692	21.085			NaN	NaN	NaN	0	0	Median	21714000	0	21714000	2799	402	2637	5523	11471;11472	11471		2	9606
TVLDPVTGDLSDTR	0	1	Unmodified	1487.7468	0.74675201	356	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					18.077	18.077	2	1.1067E-05	8262	DP1061-6	133.05	98.295			NaN	NaN	NaN	0	0	Median	9314500	0	9314500	2800	356	2638	5524	11473;11474	11474		2	9606
TVNELQNLTAAEVVVPR	0	1	Unmodified	1852.0054	0.005426314	523	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			20.21	20.21	2	5.0674E-11	11601	DP1061-8	185.57	114.35			NaN	NaN	NaN	0	0	Median	13611000	0	13611000	2801	523	2639	5525	11475;11476	11476		2	9606
TVNEPWTMGFSK	1	0	Unmodified	1395.6493	0.64928657	413	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				19.373	19.373	2	0.035328	10974	DP1061-7	73.951	35.648			NaN	NaN	NaN	0	0	Median	3828900	0	3828900	2802	413	2640	5526	11477	11477		1	9606
TVQSLEIDLDSMR	0	1	Oxidation (M)	1521.7345	0.73447277	92	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	1	0	4	0				1		18.482	18.482	2	0.02754	10282	DP1061-9	73.9	46.473			NaN	NaN	NaN	0	0	Median	9219000	0	9219000	2803	92	2641	5527	11478;11479	11479	109	2	9606
TVSLGAGAK	1	0	Unmodified	802.45487	0.45486751	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		12.512	12.512	2	0.035499	2782	DP1061-9	75.738	36.92			NaN	NaN	NaN	0	0	Median	22252000	0	22252000	2804	95	2642	5528	11480	11480		1	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	0	Oxidation (M)	2944.4488	0.44880244	95	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	4	0				3		20.43	20.43	2;3	2.3999E-31	12465	DP1061-9	193.9	169.19			NaN	NaN	NaN	0	0	Median	275500000	0	275500000	2805	95	2643	5529;5530;5531	11481;11482;11483;11484;11485;11486;11487	11484	110	7	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	0	Unmodified	2928.4539	0.45388781	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		20.764	20.764	3;4	5.588199999999999E-21	13159	DP1061-9	151.6	128.54			NaN	NaN	NaN	0	0	Median	23259000	0	23259000	2806	95	2643	5532;5533	11488;11489;11490;11491;11492;11493	11489		6	9606
TVSQIISLQTLK	1	0	Unmodified	1329.7868	0.78676633	69	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			19.182	19.182	2	0.0021128	10153	DP1061-8	108.31	67.319			NaN	NaN	NaN	0	0	Median	32726000	0	32726000	2807	69	2644	5534	11494;11495	11495		2	9606
TVTAAGAENIQQK	1	0	Unmodified	1329.6888	0.6888432	365	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		2				13.269	13.269	2	0.0050252	3700	DP1061-7	105.86	53.937			NaN	NaN	NaN	0	0	Median	0	0	0	2808	365	2645	5535;5536	11496;11497	11497		2	9606
TVTAMDVVYALK	1	0	Oxidation (M)	1325.6901	0.69008876	247	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	5	0					1	23.3	23.3	2	0.002238	11465	DP1061-10	103.7	58.539			NaN	NaN	NaN	0	0	Median	48447000	0	48447000	2809	247	2646	5537	11498;11499;11500;11501	11498	306	4	9606
TVTAMDVVYALKR	1	1	Oxidation (M)	1481.7912	0.79119978	247	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					1	25.367	25.367	3	0.0010877	14218	DP1061-10	81.709	81.709			14.737	15.763	NaN	1	0	Median	62914000	6278800	56635000	2810	247	2647	5538	11502;11503	11503	306	2	9606
TVTELVTK	1	0	Unmodified	889.51205	0.51204804	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	3	0			1			14.133	14.133	2	0.0038763	4835	DP1061-8	119.17	17.889			NaN	NaN	NaN	0	0	Median	21158000	0	21158000	2811	407	2648	5539	11504;11505	11505		2	9606
TVTNAVVTVPAYFNDSQR	0	1	Unmodified	1980.9905	0.99050453	113	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3.2	0.4			4	1		19.36	19.36	2	3.502E-11	10447	DP1061-8	136.24	136.24			9.8556	10.425	NaN	1	0	Median	115580000	11504000	104070000	2812	113	2649	5540;5541;5542;5543;5544	11506;11507;11508;11509;11510;11511;11512;11513;11514;11515	11509		10	9606
TVVSSWNR	0	1	Unmodified	947.48248	0.48247924	284	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				14.72	14.72	2	0.036238	5417	DP1061-7	76.478	35.905			NaN	NaN	NaN	0	0	Median	16898000	0	16898000	2813	284	2650	5545	11516	11516		1	9606
TWNDPSVQQDIK	1	0	Unmodified	1429.6838	0.68375782	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			17.04	17.04	2	0.042665	7757	DP1061-8	72.006	37.473			NaN	NaN	NaN	0	0	Median	7364100	0	7364100	2814	112	2651	5546	11517	11517		1	9606
TYDPSGDSTLPTCSK	1	0	Unmodified	1627.7036	0.70356657	547	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			15.356	15.356	2	0.0063653	6224	DP1061-8	96.604	68.4			NaN	NaN	NaN	0	0	Median	0	0	0	2815	547	2652	5547	11518	11518		1	9606
TYGEPESAGPSR	0	1	Unmodified	1249.5575	0.55749468	202	P50402	EMD	Emerin	yes	yes	0	0	0	5	0					1	13.157	13.157	2	0.021332	3771	DP1061-10	77.662	41.106			NaN	NaN	NaN	0	0	Median	1574100	0	1574100	2816	202	2653	5548	11519	11519		1	9606
TYLTITDTQLVNSLLEK	1	0	Unmodified	1951.0514	0.051373454	373	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		2				22.85	22.85	2	4.113E-07	15329	DP1061-7	131.66	90.263			NaN	NaN	NaN	0	0	Median	0	0	0	2817	373	2654	5549;5550	11520;11521	11521		2	9606
TYQAIKDFNR	1	1	Unmodified	1254.6357	0.63568542	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.33	1.25	2	2		2		14.652	14.652	2;3	1.8873E-11	4423	DP1061-6	156.83	129			0.85661	0.93029	9.64	5	0	Median	382320000	194970000	187340000	2818	309	2655	5551;5552;5553;5554;5555;5556	11522;11523;11524;11525;11526;11527;11528;11529;11530;11531;11532;11533;11534	11524		13	9606
TYQELLVNQNPIAQPLASR	0	1	Unmodified	2154.1433	0.14331678	518	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	0	5	0					2	23.44	23.44	2	0.00069009	12038	DP1061-10	106.6	51.289			NaN	NaN	NaN	0	0	Median	0	0	0	2819	518	2656	5557;5558	11535;11536	11535		2	9606
TYSYLTPDLWK	1	0	Unmodified	1385.6867	0.68671794	123	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		20.795	20.795	2	0.00021713	13203	DP1061-9	121.73	121.73			8.3265	8.7039	NaN	1	0	Median	27554000	3922500	23631000	2820	123	2657	5559	11537;11538	11538		2	9606
VAAPEIVSGVSGESEQK	1	0	Unmodified	1685.8472	0.84719434	44	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				16.375	16.375	2	6.4844E-06	7499	DP1061-7	126.5	84.416			NaN	NaN	NaN	0	0	Median	0	0	0	2821	44	2658	5560	11539	11539		1	9606
VACIGAWHPAR	0	1	Unmodified	1236.6186	0.61859557	169	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	4	0				2		15.229	15.229	2;3	0.0033473	6097	DP1061-9	107.66	58.247			28.191	30.14	NaN	1	0	Median	164860000	3942900	160920000	2822	169	2659	5561;5562	11540;11541;11542;11543	11543		4	9606
VADCVVGK	1	0	Unmodified	846.42694	0.4269382	384	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	3	0			1			12.473	12.473	2	0.031228	2798	DP1061-8	91.626	30.654			NaN	NaN	NaN	0	0	Median	0	0	0	2823	384	2660	5563	11544	11544		1	9606
VADEMDVMLGQEVGYSIR	0	1	2 Oxidation (M)	2042.9289	0.92889183	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	2	0	2	0		1				18.717	18.717	2	1.821E-05	10222	DP1061-7	119.17	90.536			NaN	NaN	NaN	0	0	Median	5615000	0	5615000	2824	45	2661	5564	11545;11546	11546	48;49	2	9606
VADLTEQYNEQYGAVR	0	1	Unmodified	1854.8748	0.87480607	476	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	4	0				1		17.572	17.572	2	2.136E-05	9063	DP1061-9	120.55	74.722			NaN	NaN	NaN	0	0	Median	0	0	0	2825	476	2662	5565	11547	11547		1	9606
VADNAQQQYVR	0	1	Unmodified	1290.6317	0.63166267	425	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	2.5	0.5		1	1			13.356	13.356	2	2.6239E-05	3622	DP1061-7	182.39	120.8			NaN	NaN	NaN	0	0	Median	21020000	0	21020000	2826	425	2663	5566;5567	11548;11549;11550;11551	11549		4	9606
VADNSFDAK	1	0	Unmodified	965.44543	0.44542503	345	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	4.5	0.5				1	1	12.685	12.685	2	0.0014543	3249	DP1061-10	121.05	90.38			NaN	NaN	NaN	0	0	Median	50778000	0	50778000	2827	345	2664	5568;5569	11552;11553;11554;11555	11552		4	9606
VAEDEAEAAAAAK	1	0	Unmodified	1244.5885	0.58846046	100	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1	0	1					13.566	13.566	2	0.031369	3309	DP1061-6	78.513	41.448			NaN	NaN	NaN	0	0	Median	0	0	0	2828	100	2665	5570	11556	11556		1	9606
VAEITELILK	1	0	Unmodified	1127.6802	0.680176	292	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	4	0				1		20.11	20.11	2	0.022069	12379	DP1061-9	98.582	59.035			NaN	NaN	NaN	0	0	Median	0	0	0	2829	292	2666	5571	11557	11557		1	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	1	0	Oxidation (M)	2918.2988	0.29884374	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3	0.632		1	3	1		13.823	13.823	3;4	9.6138E-05	4003	DP1061-9	77.231	56.749			NaN	NaN	NaN	0	0	Median	225560000	0	225560000	2830	339	2667	5572;5573;5574;5575;5576	11558;11559;11560;11561;11562;11563;11564;11565;11566;11567;11568;11569;11570;11571;11572	11570	450	15	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	1	0	Unmodified	2902.3039	0.30392911	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.8	0.748		2	2	1		14.148	14.148	3;4	6.5071999999999995E-28	4589	DP1061-7	170.18	152.75			NaN	NaN	NaN	0	0	Median	142900000	0	142900000	2831	339	2667	5577;5578;5579;5580;5581	11573;11574;11575;11576;11577;11578;11579;11580;11581;11582;11583;11584	11577		12	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	1	1	Oxidation (M)	3074.4	0.39995476	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	3	0.707		1	2	1		13.117	13.117	3;4;5	5.2324E-07	3319	DP1061-7	113.51	97.521			NaN	NaN	NaN	0	0	Median	192980000	0	192980000	2832	339	2668	5582;5583;5584;5585	11585;11586;11587;11588;11589;11590;11591;11592;11593;11594;11595;11596;11597	11587	450	13	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	1	1	Unmodified	3058.405	0.40504014	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.8	0.748		2	2	1		13.598	13.598	3;4	8.4108E-08	3989	DP1061-7	119.25	78.093			NaN	NaN	NaN	0	0	Median	124820000	0	124820000	2833	339	2668	5586;5587;5588;5589;5590	11598;11599;11600;11601;11602;11603;11604;11605;11606;11607;11608;11609;11610	11603		13	9606
VAFDPEQKPLHGVLK	2	0	Unmodified	1676.925	0.92499115	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.57	1.18		2	1	2	2	17.733	17.733	2;3;4	0.0002768	6791	DP1061-7	160.72	140.52			NaN	NaN	NaN	0	0	Median	1074900000	0	1074900000	2834	339	2669	5591;5592;5593;5594;5595;5596;5597	11611;11612;11613;11614;11615;11616;11617;11618;11619;11620;11621;11622;11623	11617		13	9606
VAISNPPQR	0	1	Unmodified	980.54033	0.54032847	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				13.084	13.084	2	0.025761	3124	DP1061-7	73.665	39.661			0.9694	1.0531	NaN	1	0	Median	56958000	30738000	26220000	2835	347	2670	5598	11624;11625	11624		2	9606
VAKENNVDAVHPGYGFLSER	1	1	Unmodified	2201.0865	0.086530182	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				16.375	16.375	3;4	4.8218E-07	7517	DP1061-7	90.581	90.581			0.84228	0.90528	12.803	2	0	Median	73935000	36510000	37425000	2836	116	2671	5599;5600	11626;11627;11628;11629;11630;11631;11632;11633;11634	11633		9	9606
VALELPASK	1	0	Unmodified	926.54368	0.54368251	54	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					16.246	16.246	2	0.024116	6150	DP1061-6	80.165	27.763			NaN	NaN	NaN	0	0	Median	6533000	0	6533000	2837	54	2672	5601	11635	11635		1	9606
VALGETQLVQEVR	0	1	Unmodified	1440.7936	0.79364262	557	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	2	0		1				17.923	17.923	2	0.00058978	9570	DP1061-7	160.91	66.504			NaN	NaN	NaN	0	0	Median	12944000	0	12944000	2838	557	2673	5602	11636;11637	11636		2	9606
VANFSNMDEDDIELEPER	0	1	Oxidation (M)	2137.911	0.91099316	36	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	1	0	1	0	1					18.216	18.216	2	2.4714E-08	8434	DP1061-6	139.86	113.21			NaN	NaN	NaN	0	0	Median	3486100	0	3486100	2839	36	2674	5603	11638;11639;11640	11639	38	3	9606
VANVSLLALYK	1	0	Unmodified	1189.7071	0.70705945	237	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					2	25.124	25.124	2	0.0085799	13557	DP1061-10	90.15	56.888			NaN	NaN	NaN	0	0	Median	31239000	0	31239000	2840	237	2675	5604;5605	11641;11642;11643	11641		3	9606
VAPAPAVVK	1	0	Unmodified	850.52764	0.52763852	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	2.5	1.5	1			1		12.999	12.999	2	0.010865	3271	DP1061-9	97.602	32.799			NaN	NaN	NaN	0	0	Median	38232000	0	38232000	2841	242	2676	5606;5607	11644;11645;11646;11647	11646		4	9606
VAPDEHPILLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	372	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	0	4	0				1		17.38	17.38	3	0.022231	8683	DP1061-9	52.569	1.6026			1.6472	1.7219	NaN	1	0	Median	28640000	13557000	15083000	2842	372	2677	5608	11648	11648		1	9606
VAPEEHPVLLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	261	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	4	0				1		17.38	17.38	3	0.0086648	8705	DP1061-9	59.606	10.983			1.6472	1.7219	NaN	1	0	Median	28640000	13557000	15083000	2843	261	2678	5609	11649;11650;11651	11649		3	9606
VAQYVVR	0	1	Unmodified	833.47594	0.4759373	343;426	Q14839;Q12873;Q8TDI0	CHD4;CHD3;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5	no	no	0	0	0	1	0	1					13.643	13.643	2	0.01928	3331	DP1061-6	99.511	30.078			NaN	NaN	NaN	0	0	Median	7141600	0	7141600	2844	343;426	2679	5610	11652;11653	11653		2	9606
VASGCLDINSSVK	1	0	Unmodified	1348.6657	0.66566492	87	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		15.725	15.725	2	1.5796E-07	6342	DP1061-8	138.76	96.424			0.88501	0.93517	15.31	2	0	Median	145330000	75686000	69641000	2845	87	2680	5611;5612	11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664;11665	11657		12	9606
VASIETGLAAAAAK	1	0	Unmodified	1271.7085	0.70851601	539	Q9UPP1;O75151	PHF8;PHF2	Histone lysine demethylase PHF8;Lysine-specific demethylase PHF2	yes	no	0	0	0	2	0		1				16.888	16.888	2	0.001086	8191	DP1061-7	104.43	69.902			NaN	NaN	NaN	0	0	Median	14561000	0	14561000	2846	539	2681	5613	11666;11667	11667		2	9606
VASSPVMVSNPATR	0	1	Oxidation (M)	1430.7188	0.71876312	207	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	1	0	2	0		1				14.61	14.61	2	0.052517	5307	DP1061-7	63.944	26.344			NaN	NaN	NaN	0	0	Median	0	0	0	2847	207	2682	5614	11668	11668		1	9606
VATVSLPR	0	1	Unmodified	841.50215	0.50215205	6	CON__P00761			yes	yes	0	0	0	2.69	1.43	11	6	7	7	5	23.015	23.015	2	7.732E-06	5996	DP1061-9	177.71	67.095		+	NaN	NaN	NaN	0	0	Median	64732000000	64732000000	0	2848	6	2683	5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646;5647;5648;5649;5650	11669;11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680;11681;11682;11683;11684;11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701;11702;11703;11704;11705;11706;11707;11708;11709;11710;11711;11712;11713;11714;11715;11716;11717;11718;11719;11720;11721;11722;11723;11724;11725;11726;11727;11728;11729;11730;11731;11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747	11732		79	
VATWFNQPAR	0	1	Unmodified	1188.604	0.60399136	146	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					3	21.05	21.05	2	0.00035866	10735	DP1061-10	138.83	106.01			NaN	NaN	NaN	0	0	Median	34686000	0	34686000	2849	146	2684	5651;5652;5653	11748;11749;11750;11751;11752;11753;11754;11755;11756;11757	11752		10	9606
VCTLAIIDPGDSDIIR	0	1	Unmodified	1756.9029	0.90293508	254	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					3	24.839	24.839	2	1.7671E-07	13107	DP1061-10	131.69	91.195			NaN	NaN	NaN	0	0	Median	53012000	0	53012000	2850	254	2685	5654;5655;5656	11758;11759;11760;11761;11762	11758		5	9606
VDALMDEINFMK	1	0	2 Oxidation (M)	1456.6578	0.65780235	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	2	0	1	0	1					18.358	18.358	2	0.0097624	8576	DP1061-6	77.662	27.19		+	NaN	NaN	NaN	0	0	Median	5900600	5900600	0	2851	18	2686	5657	11763;11764;11765	11763	9;10	3	9606
VDEEEKEYTCK	2	0	Unmodified	1428.6079	0.60787527	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	1	1	0	1					12.488	12.488	3	6.7259E-05	2094	DP1061-6	129.82	112.65			NaN	NaN	NaN	0	0	Median	8598200	0	8598200	2852	68	2687	5658	11766	11766		1	9606
VDENFDCVEADDVEGK	1	0	Unmodified	1839.7469	0.74688795	37	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	4	0				1		17.337	17.337	2	1.2581E-07	8757	DP1061-9	157.09	133.86			NaN	NaN	NaN	0	0	Median	4758900	0	4758900	2853	37	2688	5659	11767;11768	11767		2	9606
VDKAAAAAAALQAK	2	0	Unmodified	1297.7354	0.73539946	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		14.394	14.394	2;3	0.00017253	4973	DP1061-9	101.72	101.72			31.493	32.95	NaN	1	0	Median	57638000	2123600	55514000	2854	162	2689	5660;5661	11769;11770;11771;11772	11769		4	9606
VDLAVTRDEAAK	1	1	Unmodified	1286.683	0.68302954	516	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	1	2.5	0.5		1	1			13.865	13.865	2	0.025399	4521	DP1061-8	108.7	45.513			NaN	NaN	NaN	0	0	Median	0	0	0	2855	516	2690	5662;5663	11773;11774	11774		2	9606
VDLLNQEIEFLK	1	0	Unmodified	1459.7922	0.79224564	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0		1				22.098	22.098	2	0.00060918	14407	DP1061-7	174.98	127.79		+	NaN	NaN	NaN	0	0	Median	14181000	14181000	0	2856	20	2691	5664	11775;11776	11776		2	9606
VDMKEEPLAVSK	2	0	Oxidation (M)	1360.6908	0.69081704	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	1	0	1					13.157	13.157	3	0.030416	2973	DP1061-6	67.997	27.843			NaN	NaN	NaN	0	0	Median	9636800	0	9636800	2857	182	2692	5665	11777	11777		1	9606
VDNDENEHQLSLR	0	1	Unmodified	1567.7227	0.72266253	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3.89	1.52	3	1	2	2	11	14.728	14.728	2;3	3.6230000000000004E-73	4472	DP1061-9	198.97	163.46			51.749	55.327	3.4909	2	0	Median	2470200000	45823000	2424400000	2858	95	2693	5666;5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684	11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804;11805;11806;11807;11808;11809;11810;11811	11802		34	9606
VDNSSLTGESEPQTR	0	1	Unmodified	1618.7435	0.74345755	84	P05023;P13637;P50993;P20648	ATP1A1;ATP1A3;ATP1A2;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1	yes	no	0	0	0	1.5	0.5	1	1				14.028	14.028	2	0.00019705	4654	DP1061-7	113.95	79.196			NaN	NaN	NaN	0	0	Median	15667000	0	15667000	2859	84	2694	5685;5686	11812;11813;11814;11815	11814		4	9606
VDPEIQNVK	1	0	Unmodified	1040.5502	0.55022446	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	1.5	0.5	1	1				14.052	14.052	2	0.00097275	3802	DP1061-6	164.72	120.35		+	NaN	NaN	NaN	0	0	Median	112250000	112250000	0	2860	20	2695	5687;5688	11816;11817;11818	11816		3	9606
VDPVYIHLAER	0	1	Unmodified	1310.6983	0.69828568	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.62	0.992	5	2		1		17.046	17.046	2;3	0.00043905	8301	DP1061-7	94.363	59.67			0.7349	0.81608	13.03	5	0	Median	276340000	160520000	115820000	2861	309	2696	5689;5690;5691;5692;5693;5694;5695;5696	11819;11820;11821;11822;11823;11824;11825;11826;11827;11828;11829;11830;11831;11832;11833;11834;11835;11836;11837	11829		19	9606
VDSGIQPGSDISIYYDPMISK	1	0	Oxidation (M)	2300.0882	0.088229245	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.2	0.4			4	1		20.303	20.303	2;3	2.8625E-12	11545	DP1061-8	122.12	122.12			0.95381	0.99704	44.443	3	0	Median	342560000	175180000	167370000	2862	86	2697	5697;5698;5699;5700;5701	11838;11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849;11850;11851;11852	11839	100	15	9606
VDSGIQPGSDISIYYDPMISK	1	0	Unmodified	2284.0933	0.093314623	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.374	21.374	2	2.4040000000000002E-20	12946	DP1061-8	144.18	144.18			0.85944	0.91801	NaN	1	0	Median	101270000	53409000	47857000	2863	86	2697	5702	11853;11854;11855;11856;11857;11858	11853		6	9606
VDWQENDFSK	1	0	Unmodified	1266.5517	0.55168102	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.25	1	1		1		17.184	17.184	2	3.9118E-16	7175	DP1061-6	164.46	152.22			0.85164	0.89032	4.925	3	0	Median	866780000	464670000	402120000	2864	309	2698	5703;5704;5705	11859;11860;11861;11862;11863;11864;11865;11866;11867;11868	11860		10	9606
VDWQENDFSKR	1	1	Unmodified	1422.6528	0.65279205	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				15.87	15.87	2;3	5.091E-05	5660	DP1061-6	118.23	95.655			0.89798	0.97522	1.536	3	0	Plateau	576910000	305840000	271070000	2865	309	2699	5706;5707;5708	11869;11870;11871;11872;11873;11874;11875;11876;11877;11878;11879	11872		11	9606
VEDAADSATKPENLSSK	2	0	Unmodified	1760.8428	0.84283724	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.6	1.02	1	1	2	1		12.993	12.993	2;3	5.2871E-10	3506	DP1061-8	180.48	124.27			NaN	NaN	NaN	0	0	Median	42064000	0	42064000	2866	182	2700	5709;5710;5711;5712;5713	11880;11881;11882;11883;11884;11885;11886;11887;11888;11889;11890	11887		11	9606
VEDVSAVEIVGGATR	0	1	Unmodified	1500.7784	0.77838649	436	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	2	0		1				17.976	17.976	2	8.7196E-05	9662	DP1061-7	117.23	72.072			NaN	NaN	NaN	0	0	Median	0	0	0	2867	436	2701	5714	11891	11891		1	9606
VEEAIVAR	0	1	Unmodified	885.49198	0.4919813	350	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		13.56	13.56	2	0.0045511	3987	DP1061-9	117.93	20.866			NaN	NaN	NaN	0	0	Median	27894000	0	27894000	2868	350	2702	5715	11892;11893	11892		2	9606
VEEQEPELTSTPNFVVEVIK	1	0	Unmodified	2286.1631	0.16310875	295	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	5	0					1	25.151	25.151	2	1.5523E-07	13768	DP1061-10	131.24	102.25			NaN	NaN	NaN	0	0	Median	23957000	0	23957000	2869	295	2703	5716	11894;11895;11896	11896		3	9606
VEETDMEDEFEQPTMSFESYLSYDQPR	0	1	2 Oxidation (M)	3333.3489	0.34894955	334	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	2	0	2	0		1				21.888	21.888	3	0.0001043	14218	DP1061-7	86.732	81.875			NaN	NaN	NaN	0	0	Median	8157200	0	8157200	2870	334	2704	5717	11897	11897	439;440	1	9606
VEFMDDTSR	0	1	Oxidation (M)	1114.4601	0.46008882	253	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	1	0	5	0					2	13.976	13.976	2	0.0067866	4462	DP1061-10	104.2	104.2			NaN	NaN	NaN	0	0	Median	14250000	0	14250000	2871	253	2705	5718;5719	11898;11899;11900	11898	312	3	9606
VEGRPGASLPPLDLQALEK	1	1	Unmodified	1989.0895	0.089490294	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.38	0.696		6	1	1		22.463	22.463	2;3	5.9151E-32	10773	DP1061-7	147.83	147.83			0.71051	0.74634	9.7269	7	0	Median	797880000	455210000	342670000	2872	116	2706	5720;5721;5722;5723;5724;5725;5726;5727	11901;11902;11903;11904;11905;11906;11907;11908;11909;11910;11911;11912;11913;11914;11915;11916;11917;11918;11919;11920	11906		20	9606
VEGTEPTTAFNLFVGNLNFNK	1	0	Unmodified	2311.1485	0.14846174	134	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0.816		2	2	2		23.558	23.558	2;3	4.962E-118	15615	DP1061-8	315.43	144.07			7.3146	7.6548	104.7	2	0	Median	154020000	3467200	150550000	2873	134	2707	5728;5729;5730;5731;5732;5733	11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931;11932;11933;11934;11935;11936;11937;11938;11939	11930		18	9606
VEILANDQGNR	0	1	Unmodified	1227.6208	0.62076364	128	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	2.8	0.4		1	4			14.228	14.228	2	1.2734E-06	4856	DP1061-8	134.77	0			10.099	10.308	NaN	1	0	Median	997740000	94249000	903490000	2874	128	2708	5734;5735;5736;5737;5738	11940;11941;11942;11943;11944;11945;11946;11947	11942		8	9606
VELSPMQK	1	0	Oxidation (M)	946.47937	0.4793677	343	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	1	0	1	0	1					12.704	12.704	2	0.051244	2332	DP1061-6	69.998	35.174			NaN	NaN	NaN	0	0	Median	7288300	0	7288300	2875	343	2709	5739	11948	11948		1	9606
VEQLGAEGNVEESQK	1	0	Unmodified	1615.7689	0.76894402	549	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	4	0				1		14.258	14.258	2	8.7702E-06	4802	DP1061-9	123.95	76.721			NaN	NaN	NaN	0	0	Median	3330500	0	3330500	2876	549	2710	5740	11949;11950	11949		2	9606
VEQTETPEMMEAR	0	1	2 Oxidation (M)	1581.6651	0.66507257	214	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	2	0	1.5	0.5	1	1				12.526	12.526	2	0.0013625	2688	DP1061-7	96.229	62.485			NaN	NaN	NaN	0	0	Median	10917000	0	10917000	2877	214	2711	5741;5742	11951;11952;11953;11954	11953	276;277	4	9606
VEQTETPEMMEAR	0	1	Oxidation (M)	1565.6702	0.67015795	214	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	1	0	1	0	3					14.084	14.084	2	0.022913	3693	DP1061-6	72.321	46.979			NaN	NaN	NaN	0	0	Median	0	0	0	2878	214	2711	5743;5744;5745	11955;11956;11957	11955	276;277	3	9606
VESGGPGTSAASAR	0	1	Unmodified	1245.5949	0.59494282	470	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	4	0				1		12.417	12.417	2	1.4184E-05	2599	DP1061-9	129.84	86.069			NaN	NaN	NaN	0	0	Median	10256000	0	10256000	2879	470	2712	5746	11958;11959	11959		2	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Oxidation (M)	2530.3717	0.37166174	263	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	4	0				2		19.305	19.305	2;3	3.5288E-13	11222	DP1061-9	106.93	106.93			1.9535	2.0438	NaN	1	0	Median	55883000	18252000	37631000	2880	263	2713	5747;5748	11960;11961;11962	11961	320	3	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Unmodified	2514.3767	0.37674711	263	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	4	0				1		20.15	20.15	3	0.00017007	12481	DP1061-9	67.478	58.482			2.2228	2.3255	NaN	1	0	Median	15777000	5581400	10196000	2881	263	2713	5749	11963	11963		1	9606
VETQFQNGHYDK	1	0	Unmodified	1464.6634	0.66335673	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.4	0.49	3	2				13.163	13.163	2;3	5.1284E-11	2783	DP1061-6	175.65	175.65			0.88062	0.9552	2.3857	4	0	Median	728030000	392390000	335640000	2882	309	2714	5750;5751;5752;5753;5754	11964;11965;11966;11967;11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980	11967		17	9606
VEVGTEVTDYR	0	1	Unmodified	1266.6092	0.6091959	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	1.11	4	1		1		16.091	16.091	2	1.3719E-16	6826	DP1061-7	166.19	115.58			0.87756	0.87014	6.124	2	0	Median	1973599999.9999998	1039399999.9999999	934270000	2883	309	2715	5755;5756;5757;5758;5759;5760	11981;11982;11983;11984;11985;11986;11987;11988;11989;11990;11991	11986		11	9606
VEYLDDRNTFR	0	2	Unmodified	1426.6841	0.68409218	82	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	1	4	0				1		15.932	15.932	3	0.013232	6858	DP1061-9	62.303	62.303			3.161	3.1228	NaN	1	0	Median	11152000	3167100	7985400	2884	82	2716	5761	11992	11992		1	9606
VEYTLGEESEAPGQR	0	1	Unmodified	1663.7689	0.76894402	290	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	0	1					16.246	16.246	2	7.0716E-06	6022	DP1061-6	127.87	89.117			NaN	NaN	NaN	0	0	Median	4921800	0	4921800	2885	290	2717	5762	11993;11994	11993		2	9606
VFAEYPGSSAQLR	0	1	Unmodified	1423.7096	0.70957864	492	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					17.103	17.103	2	0.037965	7180	DP1061-6	73.067	9.4424			NaN	NaN	NaN	0	0	Median	4586200	0	4586200	2886	492	2718	5763	11995	11995		1	9606
VFCVEEEDSESSLQK	1	0	Unmodified	1784.7775	0.77745979	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.29	1	1	2	1	1	16.811	16.811	2	2.7383E-76	7804	DP1061-7	234.9	206.32			87.358	91.527	NaN	1	0	Median	1059499999.9999999	10274000	1049299999.9999999	2887	339	2719	5764;5765;5766;5767;5768;5769	11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007;12008;12009	12000		14	9606
VFCVEEEDSESSLQKR	1	1	Unmodified	1940.8786	0.87857082	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.17	0.687		1	3	2		15.811	15.811	2;3	8.1765E-12	6505	DP1061-9	189.99	129.44			NaN	NaN	NaN	0	0	Median	116650000	0	116650000	2888	339	2720	5770;5771;5772;5773;5774;5775	12010;12011;12012;12013;12014;12015;12016;12017	12016		8	9606
VFDYSEYWEGAR	0	1	Unmodified	1520.6572	0.65720872	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				20.458	20.458	2	1.405E-88	12398	DP1061-7	258.52	232.48			0.9523	0.9725	NaN	1	0	Median	475530000	239670000	235860000	2889	116	2721	5776	12018;12019;12020;12021	12020		4	9606
VFIGNLNTLVVK	1	0	Unmodified	1315.7864	0.7863724	99	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		20.118	20.118	2	1.0819E-06	12294	DP1061-9	129.85	129.85			6.9153	7.2287	NaN	1	0	Median	40704000	5577500	35126000	2890	99	2722	5777	12022;12023	12023		2	9606
VFLDFFTYAPPK	1	0	Unmodified	1443.7438	0.74383889	357	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	3	0			1			23.034	23.034	2	0.004485	15141	DP1061-8	92.538	62.771			NaN	NaN	NaN	0	0	Median	4781100	0	4781100	2891	357	2723	5778	12024;12025	12024		2	9606
VFLDVLMK	1	0	Oxidation (M)	979.54124	0.54123967	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2	0		1				19.118	19.118	2	0.027406	10503	DP1061-7	75.854	38.834			104.72	109.71	NaN	1	0	Median	275150000	3294700	271850000	2892	339	2724	5779	12026;12027	12026	451	2	9606
VFLDVLMK	1	0	Unmodified	963.54633	0.54632505	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				20.679	20.679	2	0.038914	12612	DP1061-7	75.854	55.372			NaN	NaN	NaN	0	0	Median	57768000	0	57768000	2893	339	2724	5780	12028	12028		1	9606
VFLENVIR	0	1	Unmodified	988.57057	0.57056597	247	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	24.742	24.742	2	0.038914	12833	DP1061-10	75.854	39.153			NaN	NaN	NaN	0	0	Median	175520000	0	175520000	2894	247	2725	5781	12029	12029		1	9606
VFNCISYSPLCK	1	0	Unmodified	1486.6949	0.69485656	481	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	4	0				1		18.523	18.523	2	0.022718	10308	DP1061-9	85.377	52.115			NaN	NaN	NaN	0	0	Median	0	0	0	2895	481	2726	5782	12030	12030		1	9606
VFQFLNAK	1	0	Unmodified	965.53345	0.53345218	275	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	24.321	24.321	2	0.0066803	13369	DP1061-10	114.02	55.042			NaN	NaN	NaN	0	0	Median	23852000	0	23852000	2896	275	2727	5783	12031;12032;12033	12033		3	9606
VFQPPPPPPPAPSGDAPAEKER	1	1	Unmodified	2280.1539	0.15388147	456	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				15.984	15.984	3	0.014865	6961	DP1061-7	68.49	34.866			NaN	NaN	NaN	0	0	Median	0	0	0	2897	456	2728	5784	12034	12034		1	9606
VFTTQELVQAFTHAPATLEADR	0	1	Unmodified	2444.2336	0.23358835	76	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		22.591	22.591	3	0.001059	15406	DP1061-9	102.33	68.052			NaN	NaN	NaN	0	0	Median	1902100	0	1902100	2898	76	2729	5785	12035;12036;12037	12035		3	9606
VGDGDLSAEEIPENEVSLR	0	1	Unmodified	2027.9647	0.96474329	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.62	0.625		6	6	1		21.52	21.52	2;3	1.8884E-204	10097	DP1061-7	371.5	326.67			NaN	NaN	NaN	0	0	Median	369440000	0	369440000	2899	339	2730	5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798	12038;12039;12040;12041;12042;12043;12044;12045;12046;12047;12048;12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059	12038		22	9606
VGDGDLSAEEIPENEVSLRR	0	2	Unmodified	2184.0659	0.065854319	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.67	0.745		3	2	1		17.65	17.65	2;3	8.8671E-16	9085	DP1061-7	190.34	155.57			NaN	NaN	NaN	0	0	Median	983550000	0	983550000	2900	339	2731	5799;5800;5801;5802;5803;5804	12060;12061;12062;12063;12064;12065;12066;12067;12068;12069;12070;12071;12072	12063		13	9606
VGDVTPQVK	1	0	Unmodified	941.5182	0.51819605	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	4	0.816			1	1	1	13.098	13.098	2	0.0099929	3468	DP1061-9	100.02	49.978			NaN	NaN	NaN	0	0	Median	60797000	0	60797000	2901	318	2732	5805;5806;5807	12073;12074;12075;12076;12077;12078;12079;12080	12080		8	9606
VGEVTYVELLMDAEGK	1	0	Oxidation (M)	1767.8601	0.86006721	209	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			21.922	21.922	2	1.7586E-07	13743	DP1061-8	127.78	127.78			2.4794	2.6484	NaN	1	0	Median	51490000	14742000	36748000	2902	209	2733	5808	12081;12082;12083;12084	12084	269	4	9606
VGGSDEEASGIPSR	0	1	Unmodified	1359.6266	0.62663688	505	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	3.5	0.5			1	1		13.911	13.911	2	3.5746E-05	4540	DP1061-8	121.29	88.062			NaN	NaN	NaN	0	0	Median	13593000	0	13593000	2903	505	2734	5809;5810	12085;12086;12087	12085		3	9606
VGGTSDVEVNEK	1	0	Unmodified	1232.5885	0.58846046	111	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			12.868	12.868	2	0.0023897	3265	DP1061-8	106.4	56.586			NaN	NaN	NaN	0	0	Median	3219100	0	3219100	2904	111	2735	5811	12088;12089;12090	12088		3	9606
VGINYQPPTVVPGGDLAK	1	0	Unmodified	1823.9781	0.97814893	264;394;465	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		18.945	18.945	2	9.3305E-16	9857	DP1061-8	143.31	143.31			2.8605	3.0226	5.0012	2	0	Median	343470000	88746000	254720000	2905	264;394;465	2736	5812;5813	12091;12092;12093;12094;12095;12096;12097	12092		7	9606
VGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFR	1	1	Unmodified	3633.6092	0.6091555	535	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	1	2	0		1				16.544	16.544	3	7.0236E-06	7736	DP1061-7	74.57	51.874			NaN	NaN	NaN	0	0	Median	0	0	0	2906	535	2737	5814	12098	12098		1	9606
VGPEELPVVGQLLR	0	1	Unmodified	1504.8613	0.86132826	520	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				21.896	21.896	2	0.0021473	14237	DP1061-7	97.452	63.707			NaN	NaN	NaN	0	0	Median	6083500	0	6083500	2907	520	2738	5815	12099;12100	12100		2	9606
VGVKEELLAVGK	2	0	Unmodified	1240.7391	0.73908786	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		1				16.369	16.369	3	2.5168E-05	7454	DP1061-7	155.99	128.07			NaN	NaN	NaN	0	0	Median	66263000	0	66263000	2908	182	2739	5816	12101;12102	12101		2	9606
VHELNEEIGK	1	0	Unmodified	1166.5932	0.5931519	504;549	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	0	0	4	0				1		13.259	13.259	2	0.0033285	3630	DP1061-9	112.3	77.909			NaN	NaN	NaN	0	0	Median	5865400	0	5865400	2909	504;549	2740	5817	12103;12104	12104		2	9606
VHIEIGPDGR	0	1	Unmodified	1091.5724	0.57235688	153;213	P31943;P55795;P52597	HNRNPH1;HNRNPH2;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	4	0				2		14.669	14.669	2;3	0.00015194	5357	DP1061-9	124.92	124.92			4.0614	4.3423	NaN	1	0	Median	75418000	14420000	60998000	2910	153;213	2741	5818;5819	12105;12106;12107;12108	12106		4	9606
VHNEGLPAPIVR	0	1	Unmodified	1300.7252	0.72516913	5	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	2.5	0.5		2	2			15.174	15.174	2;3	0.0039446	5835	DP1061-7	97.431	69.222		+	NaN	NaN	NaN	0	0	Median	244980000	244980000	0	2911	5	2742	5820;5821;5822;5823	12109;12110;12111;12112;12113;12114;12115	12112		7	
VHNNIVYNEYISHR	0	1	Unmodified	1756.8645	0.86451616	59	O60870	KIN	DNA/RNA-binding protein KIN17	yes	yes	0	0	0	4	0				1		15.552	15.552	3	0.00019386	6339	DP1061-9	112.15	75.862			NaN	NaN	NaN	0	0	Median	12455000	0	12455000	2912	59	2743	5824	12116;12117	12117		2	9606
VHTVMTLEQQDMVCYTAQTLVR	0	1	2 Oxidation (M)	2654.2502	0.25024275	305	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	2	0	4	0				1		17.793	17.793	3	6.6816E-09	9316	DP1061-9	134.87	117.44			NaN	NaN	NaN	0	0	Median	11697000	0	11697000	2913	305	2744	5825	12118;12119;12120;12121	12119	374;375	4	9606
VHTVVASNNGSVFSVEVDGSK	1	0	Unmodified	2131.0546	0.054561351	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			6			17.681	17.681	2;3	3.7096E-13	7799	DP1061-8	160.03	108.18			1.5164	1.6198	NaN	1	0	Median	54609000	14755000	39854000	2914	86	2745	5826;5827;5828;5829;5830;5831	12122;12123;12124;12125;12126;12127	12122		5	9606
VIAGLYQR	0	1	Unmodified	918.5287	0.52870115	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.539	15.539	2	0.024076	5299	DP1061-6	86.086	11.57			NaN	NaN	NaN	0	0	Median	17995000	0	17995000	2915	271	2746	5832	12128;12129	12128		2	9606
VIDSSDVVVQVLDAR	0	1	Unmodified	1613.8625	0.86245047	326	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				21.06	21.06	2	5.6116E-05	13228	DP1061-7	152.47	95.293			NaN	NaN	NaN	0	0	Median	5504500	0	5504500	2916	326	2747	5833	12130;12131	12131		2	9606
VIEASDVVLEVLDAR	0	1	Unmodified	1626.8829	0.88285156	475	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	3	0			1			23.422	23.422	2	2.8233E-06	15583	DP1061-8	178.32	128.97			NaN	NaN	NaN	0	0	Median	3455200	0	3455200	2917	475	2748	5834	12132;12133;12134	12134		3	9606
VIECSYTSADGQR	0	1	Unmodified	1484.6566	0.6565568	527	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	2.5	1.5	1			1		14.226	14.226	2	5.0503E-05	4779	DP1061-9	123.96	99.104			2.0304	2.1708	NaN	1	0	Median	15243000	3428800	11815000	2918	527	2749	5835;5836	12135;12136;12137;12138	12138		4	9606
VIERPPLTQQQAAQK	1	1	Unmodified	1705.9475	0.9475175	395	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	4	0				1		13.733	13.733	3	0.01144	4156	DP1061-9	73.877	50.035			NaN	NaN	NaN	0	0	Median	5297300	0	5297300	2919	395	2750	5837	12139;12140	12139		2	9606
VIGLQIFNIDTDR	0	1	Unmodified	1502.8093	0.80929269	384	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				22.081	22.081	2	0.00044026	14389	DP1061-7	152.69	110.35			NaN	NaN	NaN	0	0	Median	6187000	0	6187000	2920	384	2751	5838	12141;12142	12141		2	9606
VIGLSSDLQQVGGASAR	0	1	Unmodified	1656.8795	0.87949752	26	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	4	0				1		18.023	18.023	2	0.0016805	9676	DP1061-9	100.22	59.495			NaN	NaN	NaN	0	0	Median	6377900	0	6377900	2921	26	2752	5839	12143;12144	12144		2	9606
VIGNQSLVNELAFTAR	0	1	Unmodified	1730.9315	0.93153309	308	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		20.489	20.489	2	5.8336E-38	12821	DP1061-9	193.28	173.64			0.84814	0.90679	NaN	1	0	Median	16633000	8958500	7674200	2922	308	2753	5840	12145;12146;12147	12146		3	9606
VIHLSNLPHSGYSDSAVLK	1	0	Unmodified	2036.0691	0.069089203	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				16.754	16.754	4	0.011729	8042	DP1061-7	70.117	46.126			NaN	NaN	NaN	0	0	Median	13463000	0	13463000	2923	180	2754	5841	12148;12149	12148		2	9606
VILHLKEDQTEYLEER	1	1	Unmodified	2014.0371	0.037120373	101	P08238;Q58FF7;P07900;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	yes	no	0	0	1	2	0		1				16.8	16.8	3	0.00060838	8087	DP1061-7	95.236	60.624			NaN	NaN	NaN	0	0	Median	7589400	0	7589400	2924	101	2755	5842	12150;12151	12150		2	9606
VINEEYK	1	0	Unmodified	893.44945	0.44944778	299;363	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	4	0				1		12.642	12.642	2	0.0037215	2897	DP1061-9	114.02	55.362			NaN	NaN	NaN	0	0	Median	33964000	0	33964000	2925	299;363	2756	5843	12152;12153	12152		2	9606
VINEPTAAALAYGLDK	1	0	Unmodified	1644.8723	0.87228688	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.538	19.538	2	2.2195E-05	10640	DP1061-8	109	69.603			1.5792	1.6868	NaN	1	0	Median	22483000	10970000	11513000	2926	166	2757	5844	12154;12155;12156;12157;12158	12154		5	9606
VIQEGLEGLVLK	1	0	Unmodified	1296.7653	0.76530261	200	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	2	0		1				19.761	19.761	2	0.00036742	11578	DP1061-7	120.63	73.444			NaN	NaN	NaN	0	0	Median	3769800	0	3769800	2927	200	2758	5845	12159;12160	12160		2	9606
VIQIATSSSTAK	1	0	Unmodified	1204.6663	0.66631685	397	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	2	0		1				13.945	13.945	2	0.010174	4448	DP1061-7	87.298	30.867			NaN	NaN	NaN	0	0	Median	9101800	0	9101800	2928	397	2759	5846	12161	12161		1	9606
VISDKDLELLLDR	1	1	Unmodified	1527.8508	0.85082315	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				20.391	20.391	2	0.016122	12325	DP1061-7	99.671	30.936			NaN	NaN	NaN	0	0	Median	5962800	0	5962800	2929	512	2760	5847	12162	12162		1	9606
VITEEEKNFK	2	0	Unmodified	1235.6398	0.63976774	146	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	5	0					1	20.098	20.098	3	0.035047	9190	DP1061-10	61.161	19.472			NaN	NaN	NaN	0	0	Median	4424900	0	4424900	2930	146	2761	5848	12163	12163		1	9606
VITFANQDDYISFR	0	1	Unmodified	1687.8206	0.82058566	447	Q96G21	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4	yes	yes	0	0	0	4	0				1		20.555	20.555	2	1.5159E-05	12918	DP1061-9	176.18	115.67			NaN	NaN	NaN	0	0	Median	15950000	0	15950000	2931	447	2762	5849	12164;12165;12166	12165		3	9606
VIVMSATLDAGK	1	0	Oxidation (M)	1219.6482	0.64822394	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2	0		1				15.101	15.101	2	0.0057401	5898	DP1061-7	99.568	45.793			NaN	NaN	NaN	0	0	Median	0	0	0	2932	45	2763	5850	12167	12167	50	1	9606
VKDAVEQQGEVK	2	0	Unmodified	1328.6936	0.69359423	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	1	4	0				1		12.425	12.425	3	0.047223	2569	DP1061-9	56.414	15.798			NaN	NaN	NaN	0	0	Median	11969000	0	11969000	2933	519	2764	5851	12168	12168		1	9606
VKDAVEQQGEVKK	3	0	Unmodified	1456.7886	0.78855725	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	2	4	0				1		12.408	12.408	3	2.399E-05	2550	DP1061-9	136.17	92.488			NaN	NaN	NaN	0	0	Median	18865000	0	18865000	2934	519	2765	5852	12169	12169		1	9606
VKDMAAPGTSSVPAPTAGNAEK	2	0	Oxidation (M)	2114.0314	0.031383068	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	1	2	0		1				13.446	13.446	3	0.0019024	3838	DP1061-7	99.93	55.692			NaN	NaN	NaN	0	0	Median	10048000	0	10048000	2935	396	2766	5853	12170;12171	12170	495	2	9606
VKDWVER	1	1	Unmodified	930.49232	0.49231565	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				13.211	13.211	2;3	0.00086096	2803	DP1061-6	103.83	72.604			0.83931	0.90679	0.9105	2	0	Median	414540000	224560000	189980000	2936	309	2767	5854;5855;5856	12172;12173;12174;12175;12176;12177	12173		6	9606
VKEGVEVTDHR	1	1	Unmodified	1267.6521	0.65206377	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.414	12.414	3	0.00046319	1969	DP1061-6	106.67	80.967			0.91244	0.99091	NaN	1	0	Median	17485000	9365300	8119300	2937	34	2768	5857	12178;12179	12178		2	9606
VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK	3	0	Unmodified	4344.6117	0.61169782	95	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4	0				1		16.828	16.828	4	3.4741E-07	8123	DP1061-9	64.045	62.623			NaN	NaN	NaN	0	0	Median	7657300	0	7657300	2938	95	2769	5858	12180;12181;12182	12181		3	9606
VLAEDEELYGDFEDLETGDVHK	1	0	Unmodified	2522.1337	0.13365911	341	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	0		1				21.114	21.114	3	0.0033305	13268	DP1061-7	90.765	64.878			NaN	NaN	NaN	0	0	Median	8433700	0	8433700	2939	341	2770	5859	12183	12183		1	9606
VLAFLVLSR	0	1	Unmodified	1016.6383	0.6382516	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	3	0.816		1	1	1		21.351	21.351	2	0.0006505	13511	DP1061-7	128.61	81.613			NaN	NaN	NaN	0	0	Median	36996000	0	36996000	2940	555	2771	5860;5861;5862	12184;12185;12186;12187;12188;12189	12184		6	9606
VLAQYYTVTDEHHR	0	1	Unmodified	1730.8376	0.8376327	519	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	4	0				1		14.826	14.826	3	5.5082E-06	5577	DP1061-9	147.96	114.66			NaN	NaN	NaN	0	0	Median	12437000	0	12437000	2941	519	2772	5863	12190;12191	12191		2	9606
VLATQPGPGR	0	1	Unmodified	994.55598	0.55597854	373	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				12.739	12.739	2	0.0049691	2980	DP1061-7	107.01	42.25			NaN	NaN	NaN	0	0	Median	10883000	0	10883000	2942	373	2773	5864	12192;12193	12192		2	9606
VLATVTKPVGGDK	2	0	Unmodified	1283.7449	0.74490152	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	2.2	1.47	3			2		13.015	13.015	2;3	1.1589E-05	3245	DP1061-9	133.15	82.795			NaN	NaN	NaN	0	0	Median	175280000	0	175280000	2943	287	2774	5865;5866;5867;5868;5869	12194;12195;12196;12197;12198;12199;12200;12201	12199		8	9606
VLDELTLAR	0	1	Unmodified	1028.5866	0.58660996	7;15	CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;CON__A2A4G1;Q04695;CON__Q6IFX2;CON__P19012;P19012;CON__P08779;P08779	KRT14;KRT17;KRT15;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16	no	no	0	0	0	2.5	1.5	1			1		17.872	17.872	2	0.00091885	8065	DP1061-6	161.9	90.986		+	NaN	NaN	NaN	0	0	Median	18219000	18219000	0	2944	7;15	2775	5870;5871	12202;12203;12204	12203		3	9606
VLDLVEVLVTK	1	0	Unmodified	1226.7486	0.74858991	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	3	0			1			22.333	22.333	2	0.01424	14315	DP1061-8	85.355	66.915			NaN	NaN	NaN	0	0	Median	7945500	0	7945500	2945	466	2776	5872	12205;12206	12205		2	9606
VLDPASSDFTR	0	1	Unmodified	1206.5881	0.58806652	373	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				16.489	16.489	2	0.0322	7552	DP1061-7	75.294	12.748			NaN	NaN	NaN	0	0	Median	11796000	0	11796000	2946	373	2777	5873	12207;12208	12208		2	9606
VLEDEEGSKDIELSDDPYDCIR	1	1	Unmodified	2596.1487	0.14865725	348	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	1	4	0				1		18.454	18.454	3	0.0035513	10131	DP1061-9	84.573	61.353			NaN	NaN	NaN	0	0	Median	12474000	0	12474000	2947	348	2778	5874	12209;12210	12210		2	9606
VLEDSDLK	1	0	Unmodified	917.47058	0.47057715	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			13.911	13.911	2	0.012179	4555	DP1061-8	104.21	34.825			NaN	NaN	NaN	0	0	Median	17604000	0	17604000	2948	112	2779	5875	12211;12212	12211		2	9606
VLEEANQAINPK	1	0	Unmodified	1324.6987	0.69867961	440	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			14.931	14.931	2	0.0094938	5680	DP1061-8	87.913	38.1			NaN	NaN	NaN	0	0	Median	5969900	0	5969900	2949	440	2780	5876	12213;12214	12214		2	9606
VLEGNEQFINAAK	1	0	Unmodified	1431.7358	0.73579339	155	P35030	PRSS3	Trypsin-3	yes	yes	0	0	0	3	1		1		1		16.681	16.681	2	0.00052961	8011	DP1061-7	145.89	99.425			NaN	NaN	NaN	0	0	Median	27257000	27257000	0	2950	155	2781	5877;5878	12215;12216;12217	12215		3	9606
VLENAEGAR	0	1	Unmodified	957.48796	0.48795855	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			3			12.456	12.456	2	0.0020036	2786	DP1061-8	133.12	74.199			NaN	NaN	NaN	0	0	Median	83323000	0	83323000	2951	166	2782	5879;5880;5881	12218;12219;12220;12221	12220		4	9606
VLEQLTGQTPVFSK	1	0	Unmodified	1545.8403	0.84025847	258	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					6	22.393	22.393	2	0.0002966	10245	DP1061-10	126.66	77.469			NaN	NaN	NaN	0	0	Median	0	0	0	2952	258	2783	5882;5883;5884;5885;5886;5887	12222;12223;12224;12225;12226;12227	12225		6	9606
VLFDPFELDTSVTPGR	0	1	Unmodified	1791.9043	0.90431529	0	A0A0B4J2E5;Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	no	0	0	0	1	0	1					24.015	24.015	2	4.3107E-07	14440	DP1061-6	123.31	89.428			NaN	NaN	NaN	0	0	Median	1655000	0	1655000	2953	0	2784	5888	12228;12229;12230	12230		3	9606
VLGFSEPTVVTAALNCVGK	1	0	Unmodified	1961.0292	0.029198224	50	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	3.5	0.5			1	1		22.074	22.074	2	9.6547E-05	13971	DP1061-8	116.51	80.19			NaN	NaN	NaN	0	0	Median	8642900	0	8642900	2954	50	2785	5889;5890	12231;12232;12233	12231		3	9606
VLGQSSSKPAAAATGPPPGNTSSTQK	2	0	Unmodified	2438.2401	0.24013029	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	1	2	0		1				13.081	13.081	3	0.0017442	3378	DP1061-7	71.002	45.007			NaN	NaN	NaN	0	0	Median	4481000	0	4481000	2955	489	2786	5891	12234;12235	12235		2	9606
VLGTAFDPFLGGK	1	0	Unmodified	1320.7078	0.70778773	436	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	2	0		1				21.178	21.178	2	0.0045072	13371	DP1061-7	91.469	52.447			NaN	NaN	NaN	0	0	Median	3827600	0	3827600	2956	436	2787	5892	12236	12236		1	9606
VLGTSPEAIDSAENR	0	1	Unmodified	1557.7635	0.76346471	149	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					15.928	15.928	2	9.5374E-06	5637	DP1061-6	122.18	79.376			NaN	NaN	NaN	0	0	Median	9600400	0	9600400	2957	149	2788	5893	12237;12238;12239	12237		3	9606
VLIANNGIAAVK	1	0	Unmodified	1181.7132	0.71320746	309;34	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.5	1.12	1	1	1	1		16.496	16.496	2	8.2411E-11	6222	DP1061-6	144.12	108.83			0.88496	0.98922	7.9785	3	0	Plateau	681820000	356790000	325030000	2958	309;34	2789	5894;5895;5896;5897	12240;12241;12242;12243;12244;12245;12246;12247;12248;12249;12250	12242		11	9606
VLIFSQMTR	0	1	Oxidation (M)	1109.5903	0.59031513	53	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	1	0	2	0		1				16.984	16.984	2	0.043213	8401	DP1061-7	71.501	28.255			NaN	NaN	NaN	0	0	Median	9493500	0	9493500	2959	53	2790	5898	12251	12251		1	9606
VLKDLPR	1	1	Unmodified	839.52289	0.52288749	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				13.007	13.007	2	0.0045839	3209	DP1061-7	94.163	33.869			0.87118	0.93634	NaN	1	0	Median	48573000	24887000	23686000	2960	116	2791	5899	12252;12253	12253		2	9606
VLKPIQLTDPGK	2	0	Unmodified	1307.7813	0.78128702	545	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	1	4	0				1		15.663	15.663	3	0.021412	6552	DP1061-9	66.267	38.09			NaN	NaN	NaN	0	0	Median	10144000	0	10144000	2961	545	2792	5900	12254;12255	12255		2	9606
VLLDAPCSGTGVISK	1	0	Unmodified	1515.7967	0.79667909	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				17.253	17.253	2	4.2017E-06	8616	DP1061-7	134.49	87.229			NaN	NaN	NaN	0	0	Median	25647000	0	25647000	2962	184	2793	5901	12256;12257	12256		2	9606
VLLDAPCSGTGVISKDPAVK	2	0	Unmodified	2026.0769	0.076876698	184	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	1	2	0		1				16.717	16.717	3	0.021488	8109	DP1061-7	64.298	38.474			NaN	NaN	NaN	0	0	Median	13819000	0	13819000	2963	184	2794	5902	12258;12259	12258		2	9606
VLLGETGKEK	2	0	Unmodified	1072.6128	0.61282471	240	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	12.492	12.492	2	0.00059127	3036	DP1061-10	134.26	51.589			NaN	NaN	NaN	0	0	Median	21387000	0	21387000	2964	240	2795	5903	12260;12261	12261		2	9606
VLLLSSPGLEELYR	0	1	Unmodified	1587.8872	0.88720866	412	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				21.787	21.787	2	0.0012509	14112	DP1061-7	103.35	44.371			NaN	NaN	NaN	0	0	Median	4930800	0	4930800	2965	412	2796	5904	12262;12263	12263		2	9606
VLNNFISNQK	1	0	Unmodified	1175.6299	0.62987176	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.6	1.02	1	1	2	1		16.108	16.108	2	0.00022592	6937	DP1061-7	129.42	94.529			NaN	NaN	NaN	0	0	Median	111980000	0	111980000	2966	182	2797	5905;5906;5907;5908;5909	12264;12265;12266;12267;12268;12269;12270;12271;12272	12267		9	9606
VLNSYWVGEDSTYK	1	0	Unmodified	1659.7781	0.77805214	228	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					2	22.034	22.034	2	0.00067229	11243	DP1061-10	115	49.378			NaN	NaN	NaN	0	0	Median	0	0	0	2967	228	2798	5910;5911	12273;12274	12274		2	9606
VLNTNIDGR	0	1	Unmodified	1000.5302	0.53015772	238	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					2	15.232	15.232	2	0.0014647	4817	DP1061-10	110.41	68.299			4.7303	4.6201	52.188	2	0	Median	34610000	5100100	29510000	2968	238	2799	5912;5913	12275;12276;12277;12278;12279;12280;12281	12278		7	9606
VLPSFWIPSLTPEAK	1	0	Unmodified	1683.9236	0.92359417	548	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				2		23.103	23.103	2	0.0049913	16001	DP1061-9	99.5	71.856			NaN	NaN	NaN	0	0	Median	0	0	0	2969	548	2800	5914;5915	12282;12283	12282		2	9606
VLQAELK	1	0	Unmodified	799.48035	0.48035398	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	0.471	1	2				13.789	13.789	2	0.00073557	4243	DP1061-7	118.01	8.307			NaN	NaN	NaN	0	0	Median	554950000	0	554950000	2970	309	2801	5916;5917;5918	12284;12285;12286;12287;12288	12288		5	9606
VLQDLVMDILR	0	1	Oxidation (M)	1329.7326	0.73262227	215	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	2	0		1				22.465	22.465	2	0.015183	14954	DP1061-7	81.338	36.177			NaN	NaN	NaN	0	0	Median	2404800	0	2404800	2971	215	2802	5919	12289	12289	281	1	9606
VLQDMGLPTGAEGR	0	1	Oxidation (M)	1458.7137	0.71367774	306	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	1	0	2	0		1				15.708	15.708	2	0.0061996	6546	DP1061-7	86.911	49.799			NaN	NaN	NaN	0	0	Median	12639000	0	12639000	2972	306	2803	5920	12290;12291	12290	378	2	9606
VLQSALAAIR	0	1	Unmodified	1040.6342	0.63422886	305	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		17.314	17.314	2	0.0098714	8660	DP1061-9	91.069	43.22			NaN	NaN	NaN	0	0	Median	21492000	0	21492000	2973	305	2804	5921	12292;12293	12293		2	9606
VLSAPPHFHFGQTNR	0	1	Unmodified	1706.8641	0.86412223	147	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		15.883	15.883	4	0.00067044	6873	DP1061-9	77.204	77.204			2.2867	2.4449	NaN	1	0	Median	21176000	6009400	15166000	2974	147	2805	5922	12294	12294		1	9606
VLSIGDGIAR	0	1	Unmodified	999.57129	0.57129425	144	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.024	17.024	2	0.020928	7694	DP1061-8	69.598	19.472			1.2457	1.3558	NaN	1	0	Median	18631000	7541400	11089000	2975	144	2806	5923	12295	12295		1	9606
VLSNMIK	1	0	Oxidation (M)	819.45242	0.45242467	77	O95478	NSA2	Ribosome biogenesis protein NSA2 homolog	yes	yes	0	1	0	1	0	1					17.09	17.09	2	0.017624	7165	DP1061-6	90.986	13.928			NaN	NaN	NaN	0	0	Median	0	0	0	2976	77	2807	5924	12296	12296	73	1	9606
VLSRPNAQELPSMYQR	0	2	Oxidation (M)	1903.9574	0.95743026	458	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	1	4	0				1		15.281	15.281	3	0.0010174	6123	DP1061-9	71.98	48.099			1.328	1.3119	NaN	1	0	Median	17712000	7945500	9766800	2977	458	2808	5925	12297;12298	12298	552	2	9606
VLTAYLDYMEELGMLLGGR	0	1	Oxidation (M)	2159.0643	0.064263101	109	P0DPD6;P0DPD8			yes	no	0	1	0	2	0		1				20.704	20.704	2	0.025512	12722	DP1061-7	74.76	28.896			NaN	NaN	NaN	0	0	Median	4613000	0	4613000	2978	109	2809	5926	12299	12299	135	1	9606
VLTELLEQER	0	1	Unmodified	1228.6663	0.66631685	318	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	0.816		1	1	1		18.236	18.236	2	1.3663E-05	9853	DP1061-9	190.02	112.09			NaN	NaN	NaN	0	0	Median	114160000	0	114160000	2979	318	2810	5927;5928;5929	12300;12301;12302;12303;12304	12304		5	9606
VLTQPSSVSGSLGQR	0	1	Unmodified	1514.8053	0.80526994	4	CON__ENSEMBL:ENSBTAP00000014147			yes	yes	0	0	0	5	0					5	17.417	17.417	2	0.00013902	7341	DP1061-10	127.87	73.802		+	NaN	NaN	NaN	0	0	Median	2763600	2763600	0	2980	4	2811	5930;5931;5932;5933;5934	12305;12306;12307;12308;12309;12310	12308		6	
VLTVINQTQKENLR	1	1	Unmodified	1654.9366	0.93661847	179	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	1	5	0					4	23.635	23.635	2;3	6.4571E-06	12585	DP1061-10	124.47	95.493			NaN	NaN	NaN	0	0	Median	15125000	0	15125000	2981	179	2812	5935;5936;5937;5938	12311;12312;12313;12314	12311		4	9606
VLVATNVAAR	0	1	Unmodified	1012.6029	0.60292873	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	3	0			1			14.58	14.58	2	0.0057229	5445	DP1061-8	103.83	60.587			NaN	NaN	NaN	0	0	Median	28638000	0	28638000	2982	463	2813	5939	12315;12316	12316		2	9606
VLVDSSFGQPTTQGEAR	0	1	Unmodified	1790.8799	0.87989145	302	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	1	0	1					16.924	16.924	2	7.7205E-05	7020	DP1061-6	115.57	60.174			NaN	NaN	NaN	0	0	Median	4423700	0	4423700	2983	302	2814	5940	12317;12318	12318		2	9606
VLVLAPTR	0	1	Unmodified	867.55419	0.55418762	463	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	3	0			1			16.37	16.37	2	0.04177	7061	DP1061-8	75.189	46.767			NaN	NaN	NaN	0	0	Median	12315000	0	12315000	2984	463	2815	5941	12319	12319		1	9606
VLYDAEISQIHQSVTDTNVILSMDNSR	0	1	Oxidation (M)	3063.4819	0.48189348	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	3	0.816		1	1	1		20.413	20.413	3	1.2347E-09	12358	DP1061-7	125.05	94.694		+	NaN	NaN	NaN	0	0	Median	45052000	45052000	0	2985	20	2816	5942;5943;5944	12320;12321;12322;12323;12324;12325;12326;12327;12328;12329;12330;12331;12332	12324	18	13	9606
VMEPLTASR	0	1	Oxidation (M)	1018.5117	0.51173046	505	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	1	0	3	0			1			13.37	13.37	2	0.042546	3866	DP1061-8	71.692	32.046			NaN	NaN	NaN	0	0	Median	10728000	0	10728000	2986	505	2817	5945	12333;12334	12333		2	9606
VMFENPDFQVDEESEEFR	0	1	Oxidation (M)	2261.9423	0.94229329	468	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	1	0	1	0	1					20.107	20.107	2	0.050521	10541	DP1061-6	64.534	42.976			NaN	NaN	NaN	0	0	Median	0	0	0	2987	468	2818	5946	12335	12335		1	9606
VMLALPSVR	0	1	Oxidation (M)	1000.5739	0.57393679	360	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		17.941	17.941	2	0.01434	9368	DP1061-9	86.833	46.565			NaN	NaN	NaN	0	0	Median	18240000	0	18240000	2988	360	2819	5947	12336;12337	12336	476	2	9606
VMQQQQQTTQQQLPQK	1	0	Oxidation (M)	1956.9687	0.96872323	361	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				12.806	12.806	2	3.9898E-50	3076	DP1061-7	213.63	171.42			1.8665	1.9555	NaN	1	0	Median	7711900	2513400	5198500	2989	361	2820	5948	12338;12339;12340;12341	12340	477	4	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	1	0	Oxidation (M)	3301.5555	0.55546913	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.17	1.07		2	2	1	1	18.353	18.353	3;4	1.9042E-18	8513	DP1061-7	141.13	124.68			NaN	NaN	NaN	0	0	Median	372710000	0	372710000	2990	339	2821	5949;5950;5951;5952;5953;5954	12342;12343;12344;12345;12346;12347;12348;12349;12350;12351;12352;12353;12354;12355;12356;12357;12358;12359;12360	12344	449	19	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	1	0	Unmodified	3285.5606	0.56055451	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.75	0.829		2	1	1		18.006	18.006	3	1.4514E-46	9427	DP1061-7	199.4	169.76			NaN	NaN	NaN	0	0	Median	67518000	0	67518000	2991	339	2821	5955;5956;5957;5958	12361;12362;12363;12364;12365;12366;12367	12361		7	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	2	0	Oxidation (M)	3429.6504	0.65043215	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	4	0.707			1	2	1	18.321	18.321	3;4	2.0239E-14	7207	DP1061-9	135.02	135.02			NaN	NaN	NaN	0	0	Median	168510000	0	168510000	2992	339	2822	5959;5960;5961;5962	12368;12369;12370;12371;12372;12373;12374;12375;12376;12377;12378	12373	449	11	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	2	0	Unmodified	3413.6555	0.65551752	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.67	0.943		2		1		16.845	16.845	3;4	7.385499999999999E-19	8176	DP1061-7	145.8	125.3			NaN	NaN	NaN	0	0	Median	103320000	0	103320000	2993	339	2822	5963;5964;5965	12379;12380;12381;12382;12383;12384;12385;12386;12387;12388;12389	12384		11	9606
VNNADDFPNLFR	0	1	Unmodified	1420.6735	0.67352749	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.894	2	1	2			20.534	20.534	2	5.344E-34	11990	DP1061-7	187.99	168.75			0.7968	0.87379	7.694	2	0	Median	109940000	68334000	41610000	2994	309	2823	5966;5967;5968;5969;5970	12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401	12396		12	9606
VNPHSLPDPEVNEQSSSK	1	0	Unmodified	1962.9283	0.9282982	457	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				14.398	14.398	3	0.0051175	5046	DP1061-7	83.792	57.244			NaN	NaN	NaN	0	0	Median	8923500	0	8923500	2995	457	2824	5971	12402;12403	12403		2	9606
VNQAIWLLCTGAR	0	1	Unmodified	1500.7871	0.78711746	189	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					2	25.021	25.021	2	0.0098156	13913	DP1061-10	88.441	50.719			NaN	NaN	NaN	0	0	Median	0	0	0	2996	189	2825	5972;5973	12404;12405	12404		2	9606
VPAGNWVLIEGVDQPIVK	1	0	Unmodified	1933.0673	0.067298289	349	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				21.536	21.536	2	7.9164E-08	13772	DP1061-7	153.14	113.07			NaN	NaN	NaN	0	0	Median	4211300	0	4211300	2997	349	2826	5974	12406;12407	12407		2	9606
VPEIEVTVEGPNNNNPQTSAVR	0	1	Unmodified	2363.1717	0.17171637	269	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.807	17.807	2	6.622E-104	9412	DP1061-7	254.18	254.18			0.9081	1.0107	NaN	1	0	Median	24781000	12503000	12279000	2998	269	2827	5975	12408;12409;12410;12411;12412;12413	12410		6	9606
VPINDVLAEDKILEGTETTK	2	0	Unmodified	2184.1525	0.15254406	273	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	1	4	0				1		19.212	19.212	3	0.00023879	11185	DP1061-9	105.92	66.942			NaN	NaN	NaN	0	0	Median	10789000	0	10789000	2999	273	2828	5976	12414;12415;12416	12416		3	9606
VPLAIVNK	1	0	Unmodified	852.54329	0.54328858	333	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					15.35	15.35	2	0.041252	5094	DP1061-6	86.512	48.867			NaN	NaN	NaN	0	0	Median	0	0	0	3000	333	2829	5977	12417	12417		1	9606
VPLSEFDFSWSK	1	0	Unmodified	1440.6925	0.6925316	515	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			21.593	21.593	2	0.00021431	13256	DP1061-8	176.6	145.18			NaN	NaN	NaN	0	0	Median	32154000	0	32154000	3001	515	2830	5978	12418;12419	12419		2	9606
VPPAINQFTQALDR	0	1	Unmodified	1568.8311	0.83109076	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				2		20.023	20.023	2;3	2.9982E-07	12166	DP1061-9	180.19	149.58			NaN	NaN	NaN	0	0	Median	48891000	0	48891000	3002	242	2831	5979;5980	12420;12421;12422;12423;12424	12421		5	9606
VPQFSFSR	0	1	Unmodified	966.49232	0.49231565	149	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					17.453	17.453	2	0.034965	7604	DP1061-6	76.774	38.641			NaN	NaN	NaN	0	0	Median	7146800	0	7146800	3003	149	2832	5981	12425;12426	12425		2	9606
VPSVPETELTDQAWLPAGVR	0	1	Unmodified	2164.1164	0.11643333	496	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	2.5	0.5		1	1			21.394	21.394	2	1.0398E-20	13533	DP1061-7	201.06	137.59			NaN	NaN	NaN	0	0	Median	9020200	0	9020200	3004	496	2833	5982;5983	12427;12428;12429	12428		3	9606
VPTWGPLR	0	1	Unmodified	924.51814	0.51813647	306	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		2				17.854	17.854	2	0.010174	9507	DP1061-7	107.32	55.629			NaN	NaN	NaN	0	0	Median	0	0	0	3005	306	2834	5984;5985	12430;12431	12431		2	9606
VPVNLLR	0	1	Unmodified	809.51232	0.51232281	333	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.246	16.246	2	0.0069101	6143	DP1061-6	106.29	47.625			NaN	NaN	NaN	0	0	Median	3870400	0	3870400	3006	333	2835	5986	12432;12433	12433		2	9606
VQAERPDTMLGVVCGALHVADVSLR	0	2	Oxidation (M)	2708.3738	0.37380377	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					23.254	23.254	3;4	4.7851E-05	13570	DP1061-6	91.416	65.073			0.67757	0.72226	NaN	1	0	Median	13343000	6770800	6572000	3007	309	2836	5987;5988	12434;12435	12435	414	2	9606
VQAGAYPTEK	1	0	Unmodified	1062.5346	0.53457439	420	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		12.817	12.817	2	0.0018645	3039	DP1061-9	117.01	69.357			NaN	NaN	NaN	0	0	Median	6827800	0	6827800	3008	420	2837	5989	12436	12436		1	9606
VQALEEANNDLENK	1	0	Unmodified	1585.7584	0.75837933	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				15.768	15.768	2	2.198E-11	5480	DP1061-6	199.7	139.79		+	NaN	NaN	NaN	0	0	Median	48547000	48547000	0	3009	19	2838	5990;5991	12437;12438;12439;12440;12441;12442;12443	12440		7	9606
VQAQVIQETIVPK	1	0	Unmodified	1451.8348	0.83477916	361	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				17.194	17.194	2	0.00065335	8604	DP1061-7	106.29	106.29			1.4823	1.5531	NaN	1	0	Median	14240000	6519900	7720000	3010	361	2839	5992	12444;12445	12445		2	9606
VQDDEVGDGTTSVTVLAAELLR	0	1	Unmodified	2287.1543	0.15433498	270	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			23.93	23.93	2	1.8432E-07	16187	DP1061-8	129.36	83.156			NaN	NaN	NaN	0	0	Median	3827700	0	3827700	3011	270	2840	5993	12446;12447	12446		2	9606
VQENCIDLVGR	0	1	Unmodified	1301.6398	0.63978452	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				16.527	16.527	2	0.004053	7721	DP1061-7	126.07	64.418			NaN	NaN	NaN	0	0	Median	0	0	0	3012	64	2841	5994;5995	12448;12449	12449		2	9606
VQENSAYICSR	0	1	Unmodified	1325.6034	0.60339901	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2.67	0.471		1	2			14.276	14.276	2	6.7691E-09	4540	DP1061-7	195.79	166.25			NaN	NaN	NaN	0	0	Median	118200000	0	118200000	3013	555	2842	5996;5997;5998	12450;12451;12452;12453;12454;12455;12456	12451		7	9606
VQGTPRGLGPR	0	2	Unmodified	1136.6414	0.6414395	574				yes	yes	0	0	1	1	0	1					12.482	12.482	3	0.0018817	2103	DP1061-6	82.029	10.679	+		1.315	1.4018	NaN	1	0	Median	4981900	2417800	2564100	3014	574	2843	5999	12457	12457		1	9606
VQIAVANAQELLQR	0	1	Unmodified	1551.8733	0.87328993	562	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	5	0					2	23.242	23.242	2	0.0026012	11933	DP1061-10	94.465	55.286			NaN	NaN	NaN	0	0	Median	9800800	0	9800800	3015	562	2844	6000;6001	12458;12459	12458		2	9606
VQQAELHTGSLPR	0	1	Unmodified	1434.7579	0.75792582	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.07	3	2	1	1		14.078	14.078	2;3	5.256299999999999E-59	3788	DP1061-6	215.04	172.32			0.82379	0.84431	8.4933	6	0	Median	4701200000	2563700000	2137499999.9999998	3016	309	2845	6002;6003;6004;6005;6006;6007;6008	12460;12461;12462;12463;12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474;12475;12476;12477;12478;12479;12480;12481;12482;12483;12484;12485;12486	12469		27	9606
VQQSSESSTSSPSQHEATPGAR	0	1	Unmodified	2257.0207	0.02069504	62	O75152;A0A1B0GTU1	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	no	0	0	0	2	0		1				12.393	12.393	3	4.2707E-05	2495	DP1061-7	117.03	79.588			NaN	NaN	NaN	0	0	Median	3862500	0	3862500	3017	62	2846	6009	12487	12487		1	9606
VQQTVQDLFGR	0	1	Unmodified	1289.6728	0.67279921	166	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			18.306	18.306	2	0.00578	9148	DP1061-8	93.111	47.95			NaN	NaN	NaN	0	0	Median	17633000	17633000	0	3018	166	2847	6010	12488;12489	12489		2	9606
VQTEVLQK	1	0	Unmodified	943.53385	0.53384611	462	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		12.972	12.972	2	0.013077	3246	DP1061-9	102.71	43.732			NaN	NaN	NaN	0	0	Median	15681000	0	15681000	3019	462	2848	6011	12490;12491	12490		2	9606
VQVKEEPSAVK	2	0	Unmodified	1212.6714	0.67140222	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					12.41	12.41	3	0.011115	2000	DP1061-6	74.962	42.438			NaN	NaN	NaN	0	0	Median	5923700	0	5923700	3020	182	2849	6012	12492	12492		1	9606
VQVSYKGETK	2	0	Unmodified	1137.603	0.60298831	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			12.438	12.438	2	0.051042	2817	DP1061-8	95.523	55.456			NaN	NaN	NaN	0	0	Median	69493000	0	69493000	3021	108	2850	6013	12493	12493		1	9606
VREEEIEVDSR	0	2	Unmodified	1359.663	0.66302238	345	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	1	4	0				2		13.538	13.538	2;3	0.002033	3988	DP1061-9	92.247	70.697			NaN	NaN	NaN	0	0	Median	32357000	0	32357000	3022	345	2851	6014;6015	12494;12495;12496;12497	12497		4	9606
VRPGFCFHLCSR	0	2	Unmodified	1534.7286	0.72855672	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	2	0		1				16.286	16.286	3	0.014768	7408	DP1061-7	71.558	46.028			NaN	NaN	NaN	0	0	Median	8105400	0	8105400	3023	296	2852	6016	12498	12498		1	9606
VSALNSVHCEHVEDEGESR	0	1	Unmodified	2152.9444	0.94435897	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.86	0.99	7	3	3	1		14.321	14.321	2;3;4	4.2922000000000005E-83	3339	DP1061-6	233.14	213.23			0.87229	0.9293	16.42	12	0	Median	2679200000	1372200000	1307000000	3024	309	2853	6017;6018;6019;6020;6021;6022;6023;6024;6025;6026;6027;6028;6029;6030	12499;12500;12501;12502;12503;12504;12505;12506;12507;12508;12509;12510;12511;12512;12513;12514;12515;12516;12517;12518;12519;12520;12521;12522;12523;12524;12525;12526;12527;12528;12529;12530;12531;12532;12533;12534;12535;12536;12537;12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548;12549;12550;12551;12552;12553;12554;12555;12556;12557;12558	12502		60	9606
VSALNSVHCEHVEDEGESRYK	1	1	Unmodified	2444.1027	0.10265053	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					13.939	13.939	4	3.9912E-18	3637	DP1061-6	142.94	120.95			0.81653	0.88676	NaN	1	0	Median	13985000	6187500	7797300	3025	309	2854	6031	12559;12560;12561	12559		3	9606
VSEFNVSSEGSGEK	1	0	Unmodified	1454.6525	0.65251728	474	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				14.694	14.694	2	1.4277E-05	5421	DP1061-7	129.74	91.656			NaN	NaN	NaN	0	0	Median	7815100	0	7815100	3026	474	2855	6032	12562;12563	12563		2	9606
VSFGVSEQQAVEAWEK	1	0	Unmodified	1792.8632	0.86317875	555	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	3	0			1			20.111	20.111	2	1.9895E-07	11536	DP1061-8	142.91	112.35			NaN	NaN	NaN	0	0	Median	29814000	0	29814000	3027	555	2856	6033	12564;12565	12564		2	9606
VSGTLDTPEK	1	0	Unmodified	1045.5292	0.52915466	478	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	4	0				1		12.899	12.899	2	0.0033868	3175	DP1061-9	112.11	53.19			NaN	NaN	NaN	0	0	Median	6313500	0	6313500	3028	478	2857	6034	12566	12566		1	9606
VSGVECMIIANDATVK	1	0	Oxidation (M)	1721.8328	0.8328066	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0.5		1	6	1		19.212	19.212	2	8.104100000000001E-20	8450	DP1061-9	158.11	108			0.88467	0.94496	9.5618	4	0	Median	413840000	216840000	197000000	3029	501	2858	6035;6036;6037;6038;6039;6040;6041;6042	12567;12568;12569;12570;12571;12572;12573;12574;12575;12576;12577;12578;12579;12580;12581;12582;12583	12583	607	17	9606
VSGVECMIIANDATVK	1	0	Unmodified	1705.8379	0.83789198	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		18.838	18.838	2	9.9163E-38	9761	DP1061-8	187.62	187.62			0.98818	1.0442	10.07	2	0	Median	196000000	101420000	94581000	3030	501	2858	6043;6044	12584;12585;12586;12587;12588;12589	12587		6	9606
VSIAPSQR	0	1	Unmodified	856.47667	0.47666558	50	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	3	0			1			12.671	12.671	2	0.018683	3183	DP1061-8	93.374	13.145			NaN	NaN	NaN	0	0	Median	22767000	0	22767000	3031	50	2859	6045	12590	12590		1	9606
VSISEGDDKIEYR	1	1	Unmodified	1509.7311	0.73110195	136	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				2		15.362	15.362	2;3	1.0818E-17	6144	DP1061-9	160.22	131.94			13.911	14.281	NaN	1	0	Median	78285000	8179400	70106000	3032	136	2860	6046;6047	12591;12592;12593;12594;12595	12591		5	9606
VSIVNQYGK	1	0	Unmodified	1006.5447	0.54474515	483	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3.5	0.5			1	1		14.751	14.751	2	0.0047257	5720	DP1061-8	113.41	86.282			NaN	NaN	NaN	0	0	Median	12167000	0	12167000	3033	483	2861	6048;6049	12596;12597	12596		2	9606
VSQMLILTPFQGQGHGAQLLETVHR	0	1	Oxidation (M)	2775.449	0.44901763	37	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	1	0	4	0				1		19.192	19.192	4	0.0002921	11156	DP1061-9	97.152	77.614			NaN	NaN	NaN	0	0	Median	12891000	0	12891000	3034	37	2862	6050	12598;12599	12598	39	2	9606
VSVHVIEGDHR	0	1	Unmodified	1246.6418	0.64183343	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					12.741	12.741	3	0.044305	2445	DP1061-6	60.255	22.169			NaN	NaN	NaN	0	0	Median	4342200	0	4342200	3035	194	2863	6051	12600	12600		1	9606
VTAIHIDPATHR	0	1	Unmodified	1329.7153	0.71533272	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					13.437	13.437	3	0.0057787	3223	DP1061-6	67.879	29.245			2.6306	3.0353	NaN	1	0	Median	7589300	2280300	5308900	3036	194	2864	6052	12601;12602	12602		2	9606
VTDALNATR	0	1	Unmodified	959.50361	0.50360861	111	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			13.143	13.143	2	0.021846	3563	DP1061-8	76.064	8.1668			1.6105	1.7565	NaN	1	0	Median	16422000	6264100	10158000	3037	111	2865	6053	12603;12604	12603		2	9606
VTEDTSSVLR	0	1	Unmodified	1105.5615	0.56151742	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	14.313	14.313	2	7.3303E-16	5014	DP1061-8	157.68	157.68			1.1365	1.11	10.87	3	0	Median	920060000	453320000	466750000	3038	86	2866	6054;6055;6056;6057	12605;12606;12607;12608;12609;12610;12611;12612;12613;12614;12615;12616;12617;12618	12614		14	9606
VTELALTASDR	0	1	Unmodified	1174.6194	0.61936665	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.954	15.954	2	0.003087	5738	DP1061-6	89.08	48.198			3.3845	3.8326	NaN	1	0	Median	19907000	3603300	16304000	3039	271	2867	6058	12619;12620;12621	12619		3	9606
VTFALPDDAETEDTGVLNVK	1	0	Unmodified	2133.0477	0.047744639	30	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2	0		1				20.652	20.652	2	7.3379E-12	12689	DP1061-7	151.3	93.734			NaN	NaN	NaN	0	0	Median	7361900	0	7361900	3040	30	2868	6059	12622;12623	12623		2	9606
VTFGLNR	0	1	Unmodified	805.44464	0.44463717	339	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	1.25	1	1		1		15.899	15.899	2	0.00041227	6696	DP1061-7	110.34	58.038			84.031	85.371	NaN	1	0	Median	694740000	8794200	685950000	3041	339	2869	6060;6061;6062	12624;12625;12626;12627;12628;12629;12630	12625		7	9606
VTFSEDDEIINPEDVDPSVGR	0	1	Unmodified	2332.0707	0.070664925	307	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		20.473	20.473	2	2.5041999999999998E-21	12744	DP1061-9	205.3	180.34			NaN	NaN	NaN	0	0	Median	23439000	0	23439000	3042	307	2870	6063	12631;12632	12631		2	9606
VTGEADVEFATHEDAVAAMSK	1	0	Oxidation (M)	2192.9896	0.98957783	153	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	4	0				1		16.506	16.506	3	1.2177E-12	7609	DP1061-9	119.38	84.286			2.5486	2.6641	NaN	1	0	Median	23959000	6551800	17407000	3043	153	2871	6064	12633;12634;12635;12636;12637;12638;12639	12634	197	7	9606
VTGEADVEFATHEEAVAAMSK	1	0	Oxidation (M)	2207.0052	0.005227897	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				2		17.259	17.259	2;3	4.1458999999999995E-21	8649	DP1061-9	201.3	146.12			7.7991	8.1525	NaN	1	0	Median	68988000	6997700	61990000	3044	213	2872	6065;6066	12640;12641;12642	12642	273	3	9606
VTGEADVEFATHEEAVAAMSK	1	0	Unmodified	2191.0103	0.010313275	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		18.099	18.099	3	0.0056738	9878	DP1061-9	80.733	50.049			NaN	NaN	NaN	0	0	Median	8845300	0	8845300	3045	213	2872	6067	12643;12644	12644		2	9606
VTGPGGSPCLGSER	0	1	Unmodified	1372.6405	0.6405128	393	Q6ZN17	LIN28B	Protein lin-28 homolog B	yes	yes	0	0	0	4	0				1		14.3	14.3	2	0.013165	5108	DP1061-9	80.737	51.94			NaN	NaN	NaN	0	0	Median	5337300	0	5337300	3046	393	2873	6068	12645	12645		1	9606
VTIAQGGVLPNIQAVLLPK	1	0	Unmodified	1930.1615	0.16153303	106	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	no	no	0	0	0	5	0					2	28.25	28.25	2	0.00054697	16060	DP1061-10	108.72	73.966			NaN	NaN	NaN	0	0	Median	0	0	0	3047	106	2874	6069;6070	12646;12647	12646		2	9606
VTKNEEPSEEEIDAPKPK	3	0	Unmodified	2039.0059	0.005879824	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	2	2	0		1				13.034	13.034	3	4.8176E-08	3305	DP1061-7	159.04	127.16			NaN	NaN	NaN	0	0	Median	5872300	0	5872300	3048	508	2875	6071	12648;12649;12650;12651	12648		4	9606
VTMQNLNDR	0	1	Oxidation (M)	1105.5186	0.51860675	17;7;15	CON__P02533;P02533;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y8;CON__Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Z0	KRT14;KRT26;KRT16;KRT10;KRT28;KRT27;KRT25	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25	no	no	0	1	0	3.4	1.62	1	1		1	2	12.424	12.424	2	0.0043535	2545	DP1061-7	111.74	64.082		+	NaN	NaN	NaN	0	0	Median	136910000	136910000	0	3049	7;15;17	2876	6072;6073;6074;6075;6076	12652;12653;12654;12655;12656;12657;12658;12659	12657	3	8	9606
VTMQNLNDR	0	1	Unmodified	1089.5237	0.52369213	17;7;15	CON__P02533;P02533;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y8;CON__Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Z0	KRT14;KRT26;KRT16;KRT10;KRT28;KRT27;KRT25	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25	no	no	0	0	0	2.4	1.02	1	2	1	1		14.138	14.138	2	6.0285E-05	3829	DP1061-6	137.9	73.64		+	NaN	NaN	NaN	0	0	Median	107400000	107400000	0	3050	7;15;17	2876	6077;6078;6079;6080;6081	12660;12661;12662;12663;12664;12665;12666;12667	12661		8	9606
VTQDELKEVFEDAAEIR	1	1	Unmodified	1990.9848	0.98475045	134	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0.816		2	2	2		21.449	21.449	2;3	1.5865E-92	13592	DP1061-7	308.03	251.94			26.4	27.929	0.85444	2	0	Median	385210000	8638300	376580000	3051	134	2877	6082;6083;6084;6085;6086;6087	12668;12669;12670;12671;12672;12673;12674;12675;12676;12677;12678;12679;12680	12670		13	9606
VTSEELHYFVQNHFTSAR	0	1	Unmodified	2164.0338	0.033766329	138	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		18.314	18.314	3	1.3458E-11	10028	DP1061-9	135.08	109.23			1.4746	1.5765	NaN	1	0	Median	16756000	7640200	9115900	3052	138	2878	6088	12681;12682	12682		2	9606
VVALSMSPVDDTFISGSLDK	1	0	Oxidation (M)	2096.0347	0.034737111	391	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		20.431	20.431	2	1.6675E-11	12735	DP1061-9	136.57	105.71			NaN	NaN	NaN	0	0	Median	22444000	0	22444000	3053	391	2879	6089	12683;12684	12684	488	2	9606
VVALSMSPVDDTFISGSLDK	1	0	Unmodified	2080.0398	0.039822489	391	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		21.737	21.737	2	9.2297E-05	14381	DP1061-9	117	82.61			NaN	NaN	NaN	0	0	Median	6265000	0	6265000	3054	391	2879	6090	12685	12685		1	9606
VVDSMEDEVQR	0	1	Oxidation (M)	1321.582	0.58199487	542	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	3	0			2			12.739	12.739	2	0.011046	3199	DP1061-8	89.029	55.107			NaN	NaN	NaN	0	0	Median	0	0	0	3055	542	2880	6091;6092	12686;12687	12687	638	2	9606
VVEEAPSIFLDAETR	0	1	Unmodified	1674.8465	0.84646606	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.06	0.229			17	1		27.596	27.596	2;3	2.7283E-37	11261	DP1061-8	196.24	196.24			0.88106	0.91369	7.2529	5	0	Median	448720000	245580000	203140000	3056	86	2881	6093;6094;6095;6096;6097;6098;6099;6100;6101;6102;6103;6104;6105;6106;6107;6108;6109;6110	12688;12689;12690;12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701;12702;12703;12704;12705;12706;12707;12708;12709;12710;12711;12712;12713;12714;12715;12716;12717	12690		30	9606
VVEEAPSIFLDAETRR	0	2	Unmodified	1830.9476	0.94757708	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.1	0.3			9	1		25.642	25.642	2;3	6.6426E-06	9401	DP1061-8	137.81	137.81			0.94026	0.99943	10.047	7	0	Median	355940000	186800000	169140000	3057	86	2882	6111;6112;6113;6114;6115;6116;6117;6118;6119;6120	12718;12719;12720;12721;12722;12723;12724;12725;12726;12727;12728;12729;12730;12731;12732;12733;12734;12735;12736;12737;12738;12739;12740;12741	12720		24	9606
VVEGTPLIDGR	0	1	Unmodified	1154.6295	0.62953741	342	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	2	1	1		1			16.176	16.176	2	0.0012373	5865	DP1061-6	117.53	59.28			NaN	NaN	NaN	0	0	Median	25693000	0	25693000	3058	342	2883	6121;6122	12742;12743;12744	12742		3	9606
VVEIAPAAHLDPQLR	0	1	Unmodified	1627.9046	0.90459006	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.8	1.17	1	1	1	2		17.33	17.33	2;3	1.2149E-06	8658	DP1061-9	126.63	126.63			0.8248	0.78479	7.7622	4	0	Linear	1638099999.9999998	894190000	743920000	3059	116	2884	6123;6124;6125;6126;6127	12745;12746;12747;12748;12749;12750;12751;12752;12753;12754;12755;12756;12757;12758;12759	12756		15	9606
VVHSYEELEENYTR	0	1	Unmodified	1766.8111	0.81114318	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.78	0.916	1	2	4	2		16.598	16.598	2;3	3.0643E-127	7599	DP1061-7	285.32	256.74			1.0486	1.1211	14.98	7	0	Median	2660600000	1340800000	1319800000	3060	116	2885	6128;6129;6130;6131;6132;6133;6134;6135;6136	12760;12761;12762;12763;12764;12765;12766;12767;12768;12769;12770;12771;12772;12773;12774;12775;12776;12777;12778;12779;12780;12781;12782;12783;12784	12767		25	9606
VVLDTMK	1	0	Oxidation (M)	820.43644	0.43644025	322	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	1	0	4	0				1		12.55	12.55	2	0.03867	2804	DP1061-9	74.415	18.293			NaN	NaN	NaN	0	0	Median	10908000	0	10908000	3061	322	2886	6137	12785	12785		1	9606
VVLIVGETGSGK	1	0	Unmodified	1157.6656	0.66558856	497	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1	0	1					16.368	16.368	2	0.0086453	6197	DP1061-6	88.681	45.434			NaN	NaN	NaN	0	0	Median	9220400	0	9220400	3062	497	2887	6138	12786;12787	12786		2	9606
VVLLTGETSTDLK	1	0	Unmodified	1374.7606	0.76061116	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.527	17.527	2	0.0029865	7608	DP1061-6	96.171	72.795			NaN	NaN	NaN	0	0	Median	8789400	0	8789400	3063	66	2888	6139	12788;12789	12788		2	9606
VVNDEEVVR	0	1	Unmodified	1057.5404	0.54038805	68	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					13.404	13.404	2	0.0040905	3142	DP1061-6	114.89	72.025			NaN	NaN	NaN	0	0	Median	17195000	0	17195000	3064	68	2889	6140	12790;12791	12791		2	9606
VVNLAVDK	1	0	Unmodified	856.50182	0.5018177	538	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	1	0	1					14.246	14.246	2	0.050105	4073	DP1061-6	73.248	10.531			NaN	NaN	NaN	0	0	Median	4720300	0	4720300	3065	538	2890	6141	12792	12792		1	9606
VVNPLFEK	1	0	Unmodified	944.53312	0.53311783	242	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		16.848	16.848	2	0.015592	8017	DP1061-9	98.523	98.523			NaN	NaN	NaN	0	0	Median	26673000	0	26673000	3066	242	2891	6142	12793;12794	12793		2	9606
VVQMLGSLGGQINK	1	0	Oxidation (M)	1458.7864	0.78644876	271	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					16.501	16.501	2	0.02775	6291	DP1061-6	73.781	36.59			NaN	NaN	NaN	0	0	Median	10099000	0	10099000	3067	271	2892	6143	12795;12796	12795	347	2	9606
VVSLSEYR	0	1	Unmodified	951.50255	0.50254598	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3.5	0.5			1	1		15.91	15.91	2	0.0049675	6536	DP1061-9	117.17	56.37			NaN	NaN	NaN	0	0	Median	23087000	0	23087000	3068	31	2893	6144;6145	12797;12798;12799	12798		3	9606
VVSNDDGSISYESR	0	1	Unmodified	1526.6849	0.68488004	2	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1.5	0.5	1	1				14.682	14.682	2	9.6125E-06	4492	DP1061-6	177.57	128.51			NaN	NaN	NaN	0	0	Median	7634000	0	7634000	3069	2	2894	6146;6147	12800;12801;12802;12803;12804	12802		5	9606
VVTQNICQYR	0	1	Unmodified	1279.6343	0.63430521	412	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				14.961	14.961	2	0.00086547	5806	DP1061-7	143.01	89.235			NaN	NaN	NaN	0	0	Median	15467000	0	15467000	3070	412	2895	6148	12805;12806	12806		2	9606
VVTVVTTK	1	0	Unmodified	845.52222	0.52221879	396	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				12.899	12.899	2	0.0070132	3080	DP1061-7	113.41	44.625			NaN	NaN	NaN	0	0	Median	17337000	0	17337000	3071	396	2896	6149	12807;12808	12808		2	9606
VVVLNCEPSKER	1	1	Unmodified	1428.7395	0.73949856	340	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	1	0	1					13.472	13.472	3	0.004379	3280	DP1061-6	84.605	41.104			NaN	NaN	NaN	0	0	Median	8222800	0	8222800	3072	340	2897	6150	12809	12809		1	9606
VVVTVEQTEEELER	0	1	Unmodified	1658.8363	0.8362953	42	O15269	SPTLC1	Serine palmitoyltransferase 1	yes	yes	0	0	0	4	0				1		18.265	18.265	2	1.9729E-05	10004	DP1061-9	124.12	85.355			NaN	NaN	NaN	0	0	Median	3386400	0	3386400	3073	42	2898	6151	12810;12811	12811		2	9606
VVWVEESDKR	1	1	Unmodified	1245.6354	0.63535107	32	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	1	3	0			1			14.541	14.541	3	0.001823	5377	DP1061-8	91.584	40.148			NaN	NaN	NaN	0	0	Median	15722000	0	15722000	3074	32	2899	6152	12812;12813	12812		2	9606
VVYASATGASEPR	0	1	Unmodified	1306.6517	0.65172941	2	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	2	0.816	1	1	1			13.882	13.882	2	0.00015865	3660	DP1061-6	139.43	103.53			NaN	NaN	NaN	0	0	Median	9946700	0	9946700	3075	2	2900	6153;6154;6155	12814;12815;12816;12817;12818	12815		5	9606
VWDDGIIDPADTR	0	1	Unmodified	1471.6943	0.69432251	501	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.17	0.373			5	1		25.312	25.312	2	5.840900000000001E-25	10559	DP1061-8	173.24	173.24			0.82716	0.8723	18.381	6	0	Median	515560000	280890000	234670000	3076	501	2901	6156;6157;6158;6159;6160;6161	12819;12820;12821;12822;12823;12824;12825;12826;12827;12828;12829;12830;12831;12832;12833;12834;12835	12822		17	9606
VWLDPNETNEIANANSR	0	1	Unmodified	1941.9181	0.91806787	278	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	5	0					5	20.144	20.144	2	2.5392E-15	10256	DP1061-10	202.18	172.15			NaN	NaN	NaN	0	0	Median	23719000	0	23719000	3077	278	2902	6162;6163;6164;6165;6166	12836;12837;12838;12839;12840;12841;12842;12843;12844;12845	12840		10	9606
VYAEDPYK	1	0	Unmodified	983.46001	0.46001246	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			14.293	14.293	2	0.042386	4932	DP1061-8	71.342	42.193			0.88806	0.94859	NaN	1	0	Median	551520000	280860000	270660000	3078	86	2903	6167	12846	12846		1	9606
VYEGERPLTK	1	1	Unmodified	1190.6295	0.62953741	112	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			12.641	12.641	3	0.0051442	2990	DP1061-8	85.807	60.681			NaN	NaN	NaN	0	0	Median	36254000	0	36254000	3079	112	2904	6168	12847;12848	12847		2	9606
VYNVTQHAVGIVVNK	1	0	Unmodified	1639.9046	0.90459006	186	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					2	24.174	24.174	2;3	6.1048E-06	12480	DP1061-10	130.1	75.839			NaN	NaN	NaN	0	0	Median	54363000	0	54363000	3080	186	2905	6169;6170	12849;12850;12851;12852;12853	12853		5	9606
VYPLSSCCGDK	1	0	Unmodified	1284.5479	0.54785797	5	CON__ENSEMBL:ENSBTAP00000024466			yes	yes	0	0	0	2	0		1				14.959	14.959	2	0.014316	5435	DP1061-7	85.29	70.14		+	NaN	NaN	NaN	0	0	Median	26867000	26867000	0	3081	5	2906	6171	12854	12854		1	
VYSTALSSFLTK	1	0	Unmodified	1315.7024	0.702368	466	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				19.98	19.98	2	0.0018197	11763	DP1061-7	110.38	49.7			NaN	NaN	NaN	0	0	Median	21771000	0	21771000	3082	466	2907	6172	12855;12856	12855		2	9606
WAFSCGTWLPSR	0	1	Unmodified	1466.6765	0.67650438	510	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	4	0				1		21.339	21.339	2	0.0013174	13900	DP1061-9	113.93	81.196			NaN	NaN	NaN	0	0	Median	2191300	0	2191300	3083	510	2908	6173	12857;12858	12857		2	9606
WDQTADQTPGATPK	1	0	Unmodified	1514.7001	0.70013617	64	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				14.573	14.573	2	2.1456E-05	5262	DP1061-7	122.34	88.474			NaN	NaN	NaN	0	0	Median	6919200	0	6919200	3084	64	2909	6174	12859;12860;12861	12860		3	9606
WEAERDDWLHNR	0	2	Unmodified	1625.7335	0.73350198	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	3	1		1		1		16.252	16.252	3	0.0012105	7318	DP1061-7	98.156	56.914			NaN	NaN	NaN	0	0	Median	17500000	0	17500000	3085	289	2910	6175;6176	12862;12863;12864	12863		3	9606
WELLQQVDTSTR	0	1	Unmodified	1474.7416	0.74160705	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					19.655	19.655	2	0.0016149	9962	DP1061-6	164.66	113.87		+	NaN	NaN	NaN	0	0	Median	33470000	33470000	0	3086	80	2911	6177	12865;12866	12866		2	9606
WFEENASQSTVK	1	0	Unmodified	1424.6572	0.65720872	305	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		16.272	16.272	2	0.0040398	7370	DP1061-9	95.483	65.932			NaN	NaN	NaN	0	0	Median	9373500	0	9373500	3087	305	2912	6178	12867;12868;12869	12869		3	9606
WFLTCINQPQFR	0	1	Unmodified	1608.7871	0.78711746	147	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		21.457	21.457	2	0.0013486	14087	DP1061-9	113.71	65.863			NaN	NaN	NaN	0	0	Median	4550700	0	4550700	3088	147	2913	6179	12870;12871	12870		2	9606
WLEASEEER	0	1	Unmodified	1147.5146	0.51456723	331	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				15.473	15.473	2	0.038537	6339	DP1061-7	75.043	32.179			NaN	NaN	NaN	0	0	Median	10898000	0	10898000	3089	331	2914	6180	12872	12872		1	9606
WMLAGRPHPTQK	1	1	Oxidation (M)	1436.7347	0.73468796	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					13.39	13.39	3	0.00067478	3033	DP1061-6	90.434	68.388			0.73174	0.79468	NaN	1	0	Median	102140000	55649000	46493000	3090	309	2915	6181	12873;12874;12875	12873	415	3	9606
WMLAGRPHPTQK	1	1	Unmodified	1420.7398	0.73977334	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1				14.086	14.086	3	0.045543	4611	DP1061-7	56.936	14.841			NaN	NaN	NaN	0	0	Median	7930100	7930100	0	3091	309	2915	6182	12876	12876		1	9606
WQDIQNDPR	0	1	Unmodified	1170.5418	0.54178503	343;426	Q14839;Q8TDI0	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	no	no	0	0	0	1	0	1					14.94	14.94	2	0.017486	4784	DP1061-6	87.308	41.628			NaN	NaN	NaN	0	0	Median	6795800	0	6795800	3092	343;426	2916	6183	12877	12877		1	9606
WQLSVATEQPELEGPR	0	1	Unmodified	1838.9163	0.91627696	508	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	3	1		1		1		19.714	19.714	2	2.2701E-49	11377	DP1061-7	264.3	221.01			13.379	14.508	NaN	1	0	Median	64619000	6996900	57622000	3093	508	2917	6184;6185	12878;12879;12880;12881;12882	12881		5	9606
WSPTHEQQLISGSLDNIVK	1	0	Unmodified	2151.096	0.096032235	481	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	4	0				1		19.605	19.605	3	0.023324	11730	DP1061-9	69.612	43.808			NaN	NaN	NaN	0	0	Median	8238700	0	8238700	3094	481	2918	6186	12883	12883		1	9606
WSYEMFR	0	1	Unmodified	1017.4378	0.43783723	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.591	19.591	2	8.3347E-07	9944	DP1061-6	137.83	97.145			0.84723	0.95637	1.6993	2	0	Median	36774000	19042000	17732000	3095	309	2919	6187;6188	12884;12885;12886	12884		3	9606
WTLLQEQGTK	1	0	Unmodified	1202.6295	0.62953741	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					17.715	17.715	2	0.0003768	7836	DP1061-6	138.98	70.959		+	NaN	NaN	NaN	0	0	Median	8061100	8061100	0	3096	18	2920	6189	12887;12888	12888		2	9606
YAAPEQNNDPQQSK	1	0	Unmodified	1588.7118	0.71176349	422	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					12.554	12.554	2	1.9475E-05	2183	DP1061-6	143.5	98.638			NaN	NaN	NaN	0	0	Median	3913300	0	3913300	3097	422	2921	6190	12889;12890	12889		2	9606
YAASSYLSLTSSDWK	1	0	Unmodified	1677.7886	0.78861683	21	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	23.915	23.915	2	0.016449	12595	DP1061-10	97.953	72.479		+	NaN	NaN	NaN	0	0	Median	0	0	0	3098	21	2922	6191	12891	12891		1	
YAICSALAASALPALVMSK	1	0	Oxidation (M)	1952.0111	0.011105318	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	4	0				2		21.764	21.764	2;3	5.1115E-09	14347	DP1061-9	118.08	95.195			19.406	20.286	NaN	1	0	Median	80986000	3173700	77812000	3099	162	2923	6192;6193	12892;12893;12894;12895;12896;12897;12898	12892	204	7	9606
YAICSALAASALPALVMSK	1	0	Unmodified	1936.0162	0.016190696	162	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		22.708	22.708	2	3.1139E-05	15491	DP1061-9	119.96	83.116			NaN	NaN	NaN	0	0	Median	6810000	0	6810000	3100	162	2923	6194	12899;12900	12900		2	9606
YALTGDEVK	1	0	Unmodified	994.49713	0.49712625	243	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	5	0					1	15.011	15.011	2	0.054552	5198	DP1061-10	71.379	46.457			NaN	NaN	NaN	0	0	Median	8345800	0	8345800	3101	243	2924	6195	12901	12901		1	9606
YAPGDAVEK	1	0	Unmodified	948.45526	0.45526144	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				13.022	13.022	2	0.025647	3196	DP1061-7	78.516	40.871			NaN	NaN	NaN	0	0	Median	31954000	0	31954000	3102	485	2925	6196	12902	12902		1	9606
YAPTEAQLNAVDALIDSMSLAK	1	0	Oxidation (M)	2336.157	0.15697751	120	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	0	3	0			1			22.5	22.5	2	0.010346	14486	DP1061-8	72.11	38.805			NaN	NaN	NaN	0	0	Median	0	0	0	3103	120	2926	6197	12903	12903	167	1	9606
YAQAGFEGFK	1	0	Unmodified	1116.524	0.52400971	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.925	16.925	2	0.0060105	6930	DP1061-6	102.62	69.244			NaN	NaN	NaN	0	0	Median	8097500	0	8097500	3104	66	2927	6198	12904;12905	12905		2	9606
YAVLYQPLFDKR	1	1	Unmodified	1511.8136	0.81364979	221	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	1	3	0			1			18.757	18.757	3	0.03956	9791	DP1061-8	50.145	23.047			NaN	NaN	NaN	0	0	Median	5952400	0	5952400	3105	221	2928	6199	12906	12906		1	9606
YCDPDSYHR	0	1	Unmodified	1211.4666	0.46657118	145	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	3	0			1			12.775	12.775	3	0.0074096	3224	DP1061-8	87.308	86.372			NaN	NaN	NaN	0	0	Median	14198000	0	14198000	3106	145	2929	6200	12907;12908	12908		2	9606
YCYYNETHK	1	0	Unmodified	1276.5183	0.5182724	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				13.022	13.022	2	0.0081451	3328	DP1061-7	105.14	84.436			NaN	NaN	NaN	0	0	Median	3993600	0	3993600	3107	485	2930	6201	12909	12909		1	9606
YDAFGEDSSSAMGVENR	0	1	Oxidation (M)	1849.7425	0.74247127	547	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	1	0	3	0			2			16.481	16.481	2	0.0048508	7235	DP1061-8	88.092	61.968			NaN	NaN	NaN	0	0	Median	0	0	0	3108	547	2931	6202;6203	12910;12911	12911	646	2	9606
YDAFLASESLIK	1	0	Unmodified	1355.6973	0.69728262	256	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	25.13	25.13	2	0.031972	14392	DP1061-10	74.841	36.548			NaN	NaN	NaN	0	0	Median	18347000	0	18347000	3109	256	2932	6204	12912	12912		1	9606
YDLWNLK	1	0	Unmodified	950.48617	0.48616764	537	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		19.801	19.801	2	0.012391	11934	DP1061-9	103.28	71.171			NaN	NaN	NaN	0	0	Median	5207100	0	5207100	3110	537	2933	6205	12913;12914	12913		2	9606
YDSAPATDGSGTALGWTVAWK	1	0	Unmodified	2153.0065	0.006548526	24	CON__Streptavidin			yes	yes	0	0	0	4.17	1.34	1	1	1	1	8	24.773	24.773	2;3	4.6522E-17	13466	DP1061-10	149.36	127.04		+	NaN	NaN	NaN	0	0	Median	175600000	175600000	0	3111	24	2934	6206;6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217	12915;12916;12917;12918;12919;12920;12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931;12932;12933;12934;12935;12936;12937	12918		23	
YEDFSNLGTTHLLR	0	1	Unmodified	1664.8158	0.81583463	138	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		18.389	18.389	3	7.6484E-13	10101	DP1061-9	147.52	133.01			1.5982	1.7087	NaN	1	0	Median	25772000	12318000	13455000	3112	138	2935	6218	12938;12939;12940;12941;12942	12941		5	9606
YEELQITAGR	0	1	Unmodified	1178.5932	0.5931519	80	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3.75	0.829			2	1	1	16.653	16.653	2	0.0018745	7565	DP1061-9	155.58	85.957		+	NaN	NaN	NaN	0	0	Median	82391000	82391000	0	3113	80	2936	6219;6220;6221;6222	12943;12944;12945;12946;12947	12947		5	9606
YEELQQTAGR	0	1	Unmodified	1193.5677	0.56766543	18	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	3	1.41	1	1	1	1	1	13.776	13.776	2	0.00025527	4208	DP1061-7	128.38	92.765		+	NaN	NaN	NaN	0	0	Median	39660000	39660000	0	3114	18	2937	6223;6224;6225;6226;6227	12948;12949;12950;12951;12952;12953;12954;12955	12950		8	9606
YEGNVTEETR	0	1	Unmodified	1196.5309	0.53094558	406	Q8IY37	DHX37	Probable ATP-dependent RNA helicase DHX37	yes	yes	0	0	0	1.5	0.5	1	1				12.895	12.895	2	0.00044326	3096	DP1061-7	121.73	82.19			NaN	NaN	NaN	0	0	Median	9335500	0	9335500	3115	406	2938	6228;6229	12956;12957;12958	12958		3	9606
YEITEQR	0	1	Unmodified	937.45051	0.45051041	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		13.665	13.665	2	9.4838E-05	4119	DP1061-9	138.85	66.827			NaN	NaN	NaN	0	0	Median	40428000	0	40428000	3116	287	2939	6230	12959;12960	12960		2	9606
YELGRPAANTK	1	1	Unmodified	1218.6357	0.63568542	235	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	12.932	12.932	2	0.027178	3615	DP1061-10	103.31	66.641			NaN	NaN	NaN	0	0	Median	2443300	0	2443300	3117	235	2940	6231	12961	12961		1	9606
YENESLQNGR	0	1	Unmodified	1208.5422	0.54217896	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	1.41	1	1	1	1	1	12.765	12.765	2	0.00017955	2981	DP1061-7	176.6	122.64			NaN	NaN	NaN	0	0	Median	47782000	0	47782000	3118	182	2941	6232;6233;6234;6235;6236	12962;12963;12964;12965;12966;12967;12968;12969;12970;12971	12967		10	9606
YFPTQALNFAFK	1	0	Unmodified	1445.7343	0.73433683	85;118	P05141;P12235;Q9H0C2;P12236	SLC25A5;SLC25A4;SLC25A31;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	3.75	1.64	1			1	2	24.362	24.362	2	0.0013459	14356	DP1061-9	103.55	64.771			2.2965	2.4006	NaN	1	0	Median	19806000	2841000	16965000	3119	85;118	2942	6237;6238;6239;6240	12972;12973;12974;12975;12976	12976		5	9606
YGDSEFTVQSTTGHCVHMR	0	1	Oxidation (M)	2226.9423	0.94225048	213	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				2		14.453	14.453	3;4	0.00030179	5089	DP1061-9	103.5	95.158			NaN	NaN	NaN	0	0	Median	61736000	0	61736000	3120	213	2943	6241;6242	12977;12978;12979;12980	12980	274	4	9606
YGEQGLR	0	1	Unmodified	821.40317	0.40316629	60	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	4	0				1		12.839	12.839	2	0.0066274	3147	DP1061-9	92.191	37.426			6.4691	6.9164	NaN	1	0	Median	14599000	2262400	12337000	3121	60	2944	6243	12981;12982	12981		2	9606
YGQFSGLNPGGRPITPPR	0	2	Unmodified	1912.9908	0.9907793	233	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4	0				1		16.995	16.995	3	0.015064	8335	DP1061-9	72.175	41.632			NaN	NaN	NaN	0	0	Median	8523500	0	8523500	3122	233	2945	6244	12983	12983		1	9606
YGVIILDEAHER	0	1	Unmodified	1413.7252	0.72522871	45	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	2	0		1				17.12	17.12	3	0.00070246	8476	DP1061-7	111.52	81.589			NaN	NaN	NaN	0	0	Median	21431000	0	21431000	3123	45	2946	6245	12984;12985	12985		2	9606
YGVNPGPIVGTTR	0	1	Unmodified	1329.7041	0.70409934	175	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	4	0				1		16.525	16.525	2	0.013255	7611	DP1061-9	82.417	54.335			NaN	NaN	NaN	0	0	Median	7999700	0	7999700	3124	175	2947	6246	12986	12986		1	9606
YHTMQAAVDAVAR	0	1	Oxidation (M)	1447.6878	0.68779734	473	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	1	0	3	0			1			13.448	13.448	3	0.037619	4015	DP1061-8	51.939	13.265			NaN	NaN	NaN	0	0	Median	8370900	0	8370900	3125	473	2948	6247	12987;12988	12987		2	9606
YHTSQSGDEMTSLSEYVSR	0	1	Oxidation (M)	2191.9328	0.93279124	101	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		1				16.071	16.071	3	0.0051186	7006	DP1061-7	76.155	59.275			NaN	NaN	NaN	0	0	Median	11102000	0	11102000	3126	101	2949	6248	12989;12990	12989	125	2	9606
YHTVNGHNCEVR	0	1	Unmodified	1484.6579	0.6578942	103	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4	0				2		12.369	12.369	3	0.0051107	2546	DP1061-9	95.417	52.574			NaN	NaN	NaN	0	0	Median	0	0	0	3127	103	2950	6249;6250	12991;12992	12991		2	9606
YIASVQGSTPSPR	0	1	Unmodified	1361.6939	0.69392858	199	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	0	1					14.565	14.565	2	0.011859	4442	DP1061-6	83.862	30.105			NaN	NaN	NaN	0	0	Median	2757000	0	2757000	3128	199	2951	6251	12993;12994;12995	12995		3	9606
YICDNQDTISSK	1	0	Unmodified	1442.6348	0.63475872	13	CON__P02769			yes	yes	0	0	0	3	0			1			14.109	14.109	2	0.002096	4821	DP1061-8	108.43	32.922		+	NaN	NaN	NaN	0	0	Median	12621000	12621000	0	3129	13	2952	6252	12996;12997	12997		2	9606
YIDQEELNK	1	0	Unmodified	1150.5506	0.55061839	101	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	yes	no	0	0	0	2	0		1				14.437	14.437	2	0.0034176	5041	DP1061-7	98.629	68.126			3.1139	3.2625	NaN	1	0	Median	20099000	4917500	15182000	3130	101	2953	6253	12998;12999	12998		2	9606
YIGEVGDIVVGR	0	1	Unmodified	1275.6823	0.68230126	327	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	4	0				1		18.797	18.797	2	0.00022977	10712	DP1061-9	121.83	92.66			NaN	NaN	NaN	0	0	Median	17646000	0	17646000	3131	327	2954	6254	13000;13001	13001		2	9606
YIHLENLLAR	0	1	Unmodified	1240.6928	0.69280637	366	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	3	0			1			18.818	18.818	3	0.0030306	9745	DP1061-8	97.813	55.011			NaN	NaN	NaN	0	0	Median	15571000	0	15571000	3132	366	2955	6255	13002;13003	13003		2	9606
YILAATLDNTLK	1	0	Unmodified	1334.7446	0.74456717	231	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	4	0				1		19.603	19.603	2	0.0014896	11680	DP1061-9	112.71	77.273			NaN	NaN	NaN	0	0	Median	7411300	0	7411300	3133	231	2956	6256	13004;13005	13005		2	9606
YIPIQYVLSR	0	1	Unmodified	1250.7023	0.70230842	11	CON__P02668			yes	yes	0	0	0	3	0.816		1	1	1		20.435	20.435	2	0.00037691	12359	DP1061-7	124.08	88.724		+	NaN	NaN	NaN	0	0	Median	37388000	37388000	0	3134	11	2957	6257;6258;6259	13006;13007;13008;13009;13010	13007		5	
YIQDFQR	0	1	Unmodified	968.47158	0.4715802	129	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				15.016	15.016	2	0.033869	5789	DP1061-7	86.086	39.735			NaN	NaN	NaN	0	0	Median	11478000	0	11478000	3135	129	2958	6260	13011	13011		1	9606
YISFEER	0	1	Unmodified	942.4447	0.44469675	332	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		16.122	16.122	2	0.025534	7083	DP1061-9	79.451	31.794			1.0892	1.1645	NaN	1	0	Median	33988000	15579000	18408000	3136	332	2959	6261	13012	13012		1	9606
YISSQIERPIR	0	2	Unmodified	1360.7463	0.7462985	66	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	1	0	1					14.699	14.699	3	0.040232	4516	DP1061-6	58.592	22.783			NaN	NaN	NaN	0	0	Median	11034000	0	11034000	3137	66	2960	6262	13013	13013		1	9606
YKAEDEVQR	1	1	Unmodified	1136.5462	0.54620171	108	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3	0			1			12.415	12.415	2	7.8415E-06	2673	DP1061-8	129.42	100.26			11.633	12.114	NaN	1	0	Median	268280000	19759000	248520000	3138	108	2961	6263	13014;13015;13016	13015		3	9606
YKEETIEKMQE	2	0	Oxidation (M)	1442.6599	0.65991084	227	P61254	RPL26	60S ribosomal protein L26	yes	yes	0	1	2	5	0					1	12.493	12.493	2	0.0023667	3084	DP1061-10	136.49	58.955			NaN	NaN	NaN	0	0	Median	6462800	0	6462800	3139	227	2962	6264	13017	13017	292	1	9606
YKPLNTTPNATK	2	0	Unmodified	1346.7194	0.71941505	454	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				12.541	12.541	2	0.0012523	2710	DP1061-7	125.23	86.95			NaN	NaN	NaN	0	0	Median	8949300	0	8949300	3140	454	2963	6265	13018;13019	13018		2	9606
YKPYEEALLQAEAPR	1	1	Unmodified	1776.9046	0.90464964	347	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	2	0		1				17.883	17.883	2	0.026212	9537	DP1061-7	95.401	61.859			NaN	NaN	NaN	0	0	Median	0	0	0	3141	347	2964	6266	13020	13020		1	9606
YLDGLTAER	0	1	Unmodified	1036.5189	0.51892433	20	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.33	1.25	1	1		1		16.476	16.476	2	0.0030178	7577	DP1061-7	117.4	45.449		+	NaN	NaN	NaN	0	0	Median	109190000	109190000	0	3142	20	2965	6267;6268;6269	13021;13022;13023;13024;13025;13026	13024		6	9606
YLESEEYQER	0	1	Unmodified	1344.5834	0.58337508	565	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	yes	yes	0	0	0	4	0				1		14.833	14.833	2	0.0042147	5620	DP1061-9	109.44	78.752			NaN	NaN	NaN	0	0	Median	5317600	0	5317600	3143	565	2966	6270	13027;13028	13028		2	9606
YLGINSDGLVVGR	0	1	Unmodified	1361.7303	0.73031409	336	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	4	0				1		19.492	19.492	2	3.5908E-05	11627	DP1061-9	132.88	88.526			NaN	NaN	NaN	0	0	Median	10581000	0	10581000	3144	336	2967	6271	13029;13030;13031	13031		3	9606
YLGYLEQLLR	0	1	Unmodified	1266.6972	0.69722304	8	CON__P02662			yes	yes	0	0	0	3	0.816		1	1	1		22.405	22.405	2	0.0062426	14858	DP1061-7	101.64	62.852		+	NaN	NaN	NaN	0	0	Median	21057000	21057000	0	3145	8	2968	6272;6273;6274	13032;13033;13034;13035;13036;13037;13038;13039;13040;13041	13034		10	
YLIVDEGHR	0	1	Unmodified	1100.5615	0.56145784	512	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				14.671	14.671	2	0.010556	5459	DP1061-7	98.458	72.519			NaN	NaN	NaN	0	0	Median	44498000	0	44498000	3146	512	2969	6275	13042;13043	13042		2	9606
YLMEEDEDAYKK	2	0	Oxidation (M)	1548.6654	0.66539015	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	1	2.5	1.5	1			1		13.796	13.796	2	3.6436E-05	4272	DP1061-9	140.16	119.38			NaN	NaN	NaN	0	0	Median	16894000	0	16894000	3147	185	2970	6276;6277	13044;13045;13046;13047	13046	243	4	9606
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Oxidation (M)	2496.2054	0.20538427	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.5	1	2	1	4	1		17.738	17.738	2;3	1.803E-95	9321	DP1061-8	239.58	239.58			0.78841	0.83309	7.6231	4	0	Median	185690000	104380000	81316000	3148	455	2971	6278;6279;6280;6281;6282;6283;6284;6285	13048;13049;13050;13051;13052;13053;13054;13055;13056;13057;13058;13059;13060;13061;13062;13063;13064;13065;13066;13067;13068;13069;13070;13071;13072;13073;13074;13075	13059	549	28	9606
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Unmodified	2480.2105	0.21046965	455	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.927	18.927	2	2.1233E-96	9865	DP1061-8	244.54	244.54			0.75162	0.80285	NaN	1	0	Median	51560000	28300000	23260000	3149	455	2971	6286	13076;13077;13078;13079;13080;13081;13082;13083	13077		8	9606
YLTVAAIFR	0	1	Unmodified	1052.6019	0.6018661	328	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	3.33	0.471			2	1		20.739	20.739	2	0.0011814	13090	DP1061-9	122.13	61.167			NaN	NaN	NaN	0	0	Median	10187000	0	10187000	3150	328	2972	6287;6288;6289	13084;13085;13086;13087	13086		4	9606
YLTVAAVFR	0	1	Unmodified	1038.5862	0.58621603	265;98;81	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	3.5	0.5			1	1		19.61	19.61	2	0.00021026	11612	DP1061-9	125.25	95.914			4.0519	4.3125	5.3871	2	0	Median	365540000	67140000	298400000	3151	98;265;81	2973	6290;6291	13088;13089;13090;13091	13091		4	9606
YLTVATVFR	0	1	Unmodified	1068.5968	0.59678072	320;471	Q13509;Q9BUF5	TUBB3;TUBB6	Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	0	0	3.5	0.5			1	1		19.306	19.306	2	8.8172E-06	11300	DP1061-9	129.47	87.813			3.5559	3.8018	NaN	1	0	Median	19434000	2305900	17128000	3152	320;471	2974	6292;6293	13092;13093;13094;13095	13095		4	9606
YLVGGLSGVDEGLSSTENLK	1	0	Unmodified	2037.0266	0.026615266	520	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				19.944	19.944	2	3.8057E-07	11788	DP1061-7	124.09	96.128			NaN	NaN	NaN	0	0	Median	6410100	0	6410100	3153	520	2975	6294	13096;13097	13097		2	9606
YLYLTPQDYK	1	0	Unmodified	1302.6496	0.64960415	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	0.471	1	2				19.085	19.085	2	7.3303E-16	8710	DP1061-6	157.68	131.63			0.80776	0.90292	NaN	1	0	Median	557380000	299480000	257900000	3154	309	2976	6295;6296;6297	13098;13099;13100;13101;13102;13103;13104;13105	13101		8	9606
YLYLTPQDYKR	1	1	Unmodified	1458.7507	0.75071518	309	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.12	0.331	7	1				17.473	17.473	2;3	1.7957E-09	6917	DP1061-6	141.2	121.93			0.85503	0.92377	18.521	4	0	Median	196160000	107400000	88757000	3155	309	2977	6298;6299;6300;6301;6302;6303;6304;6305	13106;13107;13108;13109;13110;13111;13112;13113;13114;13115;13116;13117;13118;13119;13120;13121;13122	13110		16	9606
YLYLTPQDYTR	0	1	Unmodified	1431.7034	0.70343063	34	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.137	19.137	2	0.00033493	9498	DP1061-6	118.03	96.661			0.91256	1.0555	NaN	1	0	Median	11848000	5493900	6354200	3156	34	2978	6306	13123;13124;13125;13126	13126		4	9606
YMACCLLYR	0	1	Unmodified	1248.5454	0.54535555	264;394;465	P68363;P68366;A6NHL2;Q71U36;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		18.292	18.292	2	0.0057449	9967	DP1061-9	91.041	70.712			3.684	3.9582	1.6713	2	0	Median	48460000	11043000	37417000	3157	264;394;465	2979	6307;6308	13127;13128;13129;13130	13130		4	9606
YMACCLLYR	0	1	Oxidation (M)	1264.5403	0.54027017	264;394;465	P68363;P68366;A6NHL2;Q71U36;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	4	0				1		17.375	17.375	2	0.0041457	8774	DP1061-9	94.006	94.006			3.4581	3.6972	NaN	1	0	Median	57427000	10809000	46617000	3158	264;394;465	2979	6309	13131;13132;13133;13134	13133	326	4	9606
YMPQNPHIIATK	1	0	Oxidation (M)	1427.7231	0.72312022	363	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	1	0	4	0				1		13.949	13.949	3	0.047889	4406	DP1061-9	45.28	11.739			NaN	NaN	NaN	0	0	Median	9702900	0	9702900	3159	363	2980	6310	13135;13136	13135		2	9606
YNILGTNTIMDK	1	0	Oxidation (M)	1397.6861	0.68606601	281	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	2	0		1				17.563	17.563	2	0.0011084	9118	DP1061-7	113.44	90.091			NaN	NaN	NaN	0	0	Median	30130000	0	30130000	3160	281	2981	6311	13137;13138	13138	355	2	9606
YPASTVQILGAEK	1	0	Unmodified	1375.7347	0.73473076	31	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			17.468	17.468	2	0.027732	8117	DP1061-8	75.479	27.519			NaN	NaN	NaN	0	0	Median	8291900	0	8291900	3161	31	2982	6312	13139	13139		1	9606
YPENFFLLR	0	1	Unmodified	1197.6182	0.61824444	163;233;234	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		21.269	21.269	2	0.0054093	13655	DP1061-9	111.82	54.226			NaN	NaN	NaN	0	0	Median	346530000	0	346530000	3162	163;233;234	2983	6313;6314	13140;13141;13142;13143;13144	13143		5	9606
YPIEHGIITNWDDMEK	1	0	Oxidation (M)	1975.8986	0.89857798	244	P63267;P68133;P68032;P62736	ACTG2;ACTA1;ACTC1;ACTA2	Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle	yes	no	0	1	0	4	0				1		17.705	17.705	3	0.035171	9202	DP1061-9	55.975	31.508			NaN	NaN	NaN	0	0	Median	9344400	0	9344400	3163	244	2984	6315	13145	13145		1	9606
YPTFIDALR	0	1	Unmodified	1094.576	0.57604528	29	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			20.336	20.336	2	0.014377	11690	DP1061-8	90.657	54.777			NaN	NaN	NaN	0	0	Median	13103000	0	13103000	3164	29	2985	6316	13146;13147	13146		2	9606
YQAVTATLEEK	1	0	Unmodified	1251.6347	0.63468237	171	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	3	2	1				1	16.775	16.775	2	0.00020135	7978	DP1061-10	129.85	99.165			NaN	NaN	NaN	0	0	Median	16129000	0	16129000	3165	171	2986	6317;6318	13148;13149;13150;13151;13152;13153;13154;13155	13152		8	9606
YQILPLHSQIPR	0	1	Unmodified	1463.8249	0.82488317	296	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				17.387	17.387	3	0.00020107	8926	DP1061-7	110.93	110.93			6.538	7.2082	NaN	1	0	Median	34242000	3125100	31117000	3166	296	2987	6319	13156;13157	13157		2	9606
YQYGGLNSGRPVTPPR	0	2	Unmodified	1760.8958	0.89581629	234	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	1	4	0				1		15.359	15.359	3	0.027158	6157	DP1061-9	65.043	43.623			NaN	NaN	NaN	0	0	Median	34768000	0	34768000	3167	234	2988	6320	13158	13158		1	9606
YRPGTVALR	0	2	Unmodified	1031.5876	0.58761301	267	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	no	no	0	0	1	5	0					1	23.817	23.817	2	0.022101	12814	DP1061-10	74.173	39.92			12.711	13.002	NaN	1	0	Median	126700000	12142000	114560000	3168	267	2989	6321	13159	13159		1	9606
YRTEAHQDVVGR	0	2	Unmodified	1429.7062	0.7062246	485	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	2	0		1				12.408	12.408	3	0.0013995	2486	DP1061-7	94.402	56.463			NaN	NaN	NaN	0	0	Median	42350000	0	42350000	3169	485	2990	6322	13160;13161	13160		2	9606
YSEVFEAINITNNEK	1	0	Unmodified	1769.8472	0.84719434	266	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	4	0				1		19.538	19.538	2	0.00017349	11645	DP1061-9	132.32	92.307			NaN	NaN	NaN	0	0	Median	0	0	0	3170	266	2991	6323	13162	13162		1	9606
YSGSYNDYLR	0	1	Unmodified	1236.5411	0.54111633	453	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	4	0				1		16.754	16.754	2	0.0026732	7951	DP1061-9	98.582	77.635			0.9549	1.0209	NaN	1	0	Median	7218600	4600400	2618200	3171	453	2992	6324	13163;13164;13165;13166	13163		4	9606
YSGTLNLDR	0	1	Unmodified	1037.5142	0.5141733	194	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					15.529	15.529	2	0.0095469	5258	DP1061-6	101.25	49.465			NaN	NaN	NaN	0	0	Median	7859100	0	7859100	3172	194	2993	6325	13167;13168	13168		2	9606
YSLQSANASSLSSGQLK	1	0	Unmodified	1739.869	0.86899241	489	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				16.956	16.956	2	5.1636E-08	8385	DP1061-7	138.02	93.457			NaN	NaN	NaN	0	0	Median	8003000	0	8003000	3173	489	2994	6326	13169;13170;13171;13172	13171		4	9606
YSLQYYMGLAEELVR	0	1	Oxidation (M)	1849.892	0.89203604	116	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				22.807	22.807	2	6.5545E-13	15211	DP1061-7	151.26	151.26			0.89678	0.99982	NaN	1	0	Median	23328000	12387000	10941000	3174	116	2995	6327	13173;13174;13175;13176;13177	13176	163	5	9606
YSMYNSVSQK	1	0	Oxidation (M)	1221.5336	0.53358811	413	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	1	0	2	0		1				12.76	12.76	2	0.00012313	2952	DP1061-7	137.14	108.44			NaN	NaN	NaN	0	0	Median	12965000	0	12965000	3175	413	2996	6328	13178;13179	13179	514	2	9606
YSNSEVVTGSGR	0	1	Unmodified	1254.584	0.58404378	398	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				13.223	13.223	2	0.0021077	3540	DP1061-7	94.692	45.274			1.2199	1.375	NaN	1	0	Median	8673100	4938400	3734700	3176	398	2997	6329	13180;13181	13180		2	9606
YSQLVVETIR	0	1	Unmodified	1206.6608	0.66083754	434	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	5	0					4	21.916	21.916	2	4.2332E-05	10387	DP1061-10	180.67	138.8			NaN	NaN	NaN	0	0	Median	18728000	0	18728000	3177	434	2998	6330;6331;6332;6333	13182;13183;13184;13185;13186;13187	13182		6	9606
YSQVLANGLDNK	1	0	Unmodified	1320.6674	0.66737948	238	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	17.77	17.77	2	0.035119	7354	DP1061-10	80.916	43.367			NaN	NaN	NaN	0	0	Median	0	0	0	3178	238	2999	6334	13188	13188		1	9606
YSSAGTVEFLVDSK	1	0	Unmodified	1501.73	0.73003931	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		19.13	19.13	2	2.8602E-12	10089	DP1061-8	145.23	119.79			0.97827	1.0449	NaN	1	0	Median	210510000	99651000	110860000	3179	86	3000	6335;6336;6337	13189;13190;13191;13192;13193;13194;13195	13190		7	9606
YSSAGTVEFLVDSKK	2	0	Unmodified	1629.825	0.82500233	86	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			17.546	17.546	3	3.1431E-05	8264	DP1061-8	104.9	80.391			0.77054	0.87954	NaN	1	0	Median	44024000	25780000	18244000	3180	86	3001	6338	13196;13197;13198;13199	13199		4	9606
YSSEVATESPLDFTK	1	0	Unmodified	1672.7832	0.7831971	428	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				18.652	18.652	2	1.1932E-05	10153	DP1061-7	173.04	145.12			NaN	NaN	NaN	0	0	Median	18692000	0	18692000	3181	428	3002	6339	13200;13201	13200		2	9606
YSTPATLEQNYIVCELQQK	1	0	Unmodified	2284.1045	0.10454801	313	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				20.866	20.866	2	0.00023975	12938	DP1061-7	113.25	77.362			NaN	NaN	NaN	0	0	Median	0	0	0	3182	313	3003	6340	13202	13202		1	9606
YSVLNNDDYFADVSPLR	0	1	Unmodified	1986.9323	0.93232095	364	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	3	0			2			21.567	21.567	2	5.2897E-07	13277	DP1061-8	145.17	117.83			NaN	NaN	NaN	0	0	Median	0	0	0	3183	364	3004	6341;6342	13203;13204	13203		2	9606
YTAAVPYR	0	1	Unmodified	939.48142	0.48141661	527	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	1	0	1					14.764	14.764	2	0.045094	4604	DP1061-6	74.415	24.376			NaN	NaN	NaN	0	0	Median	5815200	0	5815200	3184	527	3005	6343	13205	13205		1	9606
YTEGVQSLNWTK	1	0	Unmodified	1424.6936	0.69359423	559	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1.5	0.5	1	1				17.7	17.7	2	0.0013856	7828	DP1061-6	113.44	64.651			NaN	NaN	NaN	0	0	Median	23034000	0	23034000	3185	559	3006	6344;6345	13206;13207;13208	13207		3	9606
YTEMDYAR	0	1	Oxidation (M)	1063.4281	0.42806041	534	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	1	0	5	0					1	13.3	13.3	2	0.022824	3870	DP1061-10	80.229	30.639			NaN	NaN	NaN	0	0	Median	13663000	0	13663000	3186	534	3007	6346	13209	13209	637	1	9606
YTFNEDEGELPEWFVQEEK	1	0	Unmodified	2388.0434	0.043387542	407	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				22.289	22.289	2	7.6464E-13	14699	DP1061-7	165.64	135.73			NaN	NaN	NaN	0	0	Median	2944800	0	2944800	3187	407	3008	6347	13210;13211;13212	13210		3	9606
YTHAANTVVYSSNK	1	0	Unmodified	1553.7474	0.74742071	391	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				2		12.706	12.706	2;3	1.9255E-07	3009	DP1061-9	185.3	149.8			NaN	NaN	NaN	0	0	Median	33303000	0	33303000	3188	391	3009	6348;6349	13213;13214;13215;13216;13217	13217		5	9606
YTPSQQGVAFNSGAK	1	0	Unmodified	1553.7474	0.74742071	321	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3.33	0.471			2	1		15.096	15.096	2	0.00011383	5997	DP1061-8	122.7	89.471			NaN	NaN	NaN	0	0	Median	0	0	0	3189	321	3010	6350;6351;6352	13218;13219;13220	13218		3	9606
YVASAVFGVIGSQK	1	0	Unmodified	1424.7664	0.76636524	538	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	2	0		1				19.503	19.503	2	0.0023331	11161	DP1061-7	96.229	66.486			NaN	NaN	NaN	0	0	Median	6159000	0	6159000	3190	538	3011	6353	13221	13221		1	9606
YVASYLLAALGGNSSPSAK	1	0	Unmodified	1867.968	0.96797818	89	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					4	26.511	26.511	2	3.7121E-07	14856	DP1061-10	125.22	84.602			NaN	NaN	NaN	0	0	Median	18799000	0	18799000	3191	89	3012	6354;6355;6356;6357	13222;13223;13224;13225;13226;13227	13223		6	9606
YVDIGVLASDLQR	0	1	Unmodified	1447.7671	0.76709352	44	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				21.092	21.092	2	0.000602	13256	DP1061-7	115.18	87.094			NaN	NaN	NaN	0	0	Median	3895700	0	3895700	3192	44	3013	6358	13228;13229;13230	13229		3	9606
YVELFLNSTAGASGGAYEHR	0	1	Unmodified	2141.0178	0.017781914	153	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	4	0				1		18.547	18.547	3	9.295599999999999E-21	10298	DP1061-9	148.06	148.06			2.9175	3.1192	NaN	1	0	Median	27458000	7603400	19855000	3193	153	3014	6359	13231;13232;13233	13233		3	9606
YVFTDISYSIPHR	0	1	Unmodified	1596.7936	0.79364262	273	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	4	0				1		19.036	19.036	3	0.018818	10994	DP1061-9	71.548	59.677			NaN	NaN	NaN	0	0	Median	10673000	0	10673000	3194	273	3015	6360	13234;13235	13235		2	9606
YVIYIER	0	1	Unmodified	954.51747	0.51746776	227	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	0	5	0					1	21.77	21.77	2	0.0088918	10793	DP1061-10	105.2	60.227			NaN	NaN	NaN	0	0	Median	18812000	0	18812000	3195	227	3016	6361	13236;13237;13238;13239	13239		4	9606
YVLEEAEQLEPR	0	1	Unmodified	1474.7304	0.73037367	416	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	4	0				1		18.634	18.634	2	0.00069198	10303	DP1061-9	140.16	106.79			NaN	NaN	NaN	0	0	Median	18063000	0	18063000	3196	416	3017	6362	13240;13241	13241		2	9606
YVSFEDR	0	1	Unmodified	914.4134	0.41339662	325	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		15.15	15.15	2	0.0064236	6002	DP1061-9	92.467	74.905			1.0384	1.1102	NaN	1	0	Median	37297000	20888000	16409000	3197	325	3018	6363	13242;13243	13243		2	9606
YYPTEDVPRK	1	1	Unmodified	1266.6245	0.62445203	287	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				1		13.745	13.745	2	0.050961	4220	DP1061-9	89.698	51.971			NaN	NaN	NaN	0	0	Median	6148600	0	6148600	3198	287	3019	6364	13244	13244		1	9606
YYTALYR	0	1	Unmodified	948.47052	0.47051757	289	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				16.239	16.239	2	0.012387	7347	DP1061-7	103.29	41.289			NaN	NaN	NaN	0	0	Median	50930000	0	50930000	3199	289	3020	6365	13245;13246	13246		2	9606
YYVTIIDAPGHR	0	1	Unmodified	1403.7197	0.7197494	263	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	4	0				2		16.977	16.977	2;3	0.00077912	8212	DP1061-9	72.34	72.34			1.9818	2.1189	5.7105	2	0	Median	75744000	25082000	50662000	3200	263	3021	6366;6367	13247;13248;13249;13250;13251;13252;13253;13254;13255;13256	13250		10	9606
YYYAVVDCDSPETASK	1	0	Unmodified	1866.7982	0.79819523	491	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				17.3	17.3	2	1.2708E-07	8737	DP1061-7	161.93	119.83			NaN	NaN	NaN	0	0	Median	10916000	0	10916000	3201	491	3022	6368	13257;13258	13258		2	9606
