Sequence	K Count	R Count	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Ratio H/L	Ratio H/L normalized	Ratio H/L variability [%]	Ratio H/L count	Ratio H/L iso-count	Ratio H/L type	Intensity	Intensity L	Intensity H	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAAAAAGAAGGR	0	1	Acetyl (Protein N-term)	1239.632	0.63199703	439	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	1	0	0	4	0				1		20.23	20.23	2	0.00037518	13647	DP1063-9	130.41	102.2			NaN	NaN	NaN	0	0	Median	6066200	0	6066200	0	439	0	0	0	0		1	9606
AAAAAAAAAVSR	0	1	Unmodified	999.54614	0.54614213	478	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	0	2	0		1				14.469	14.469	2	0.0033247	5553	DP1063-7	128.35	90.536			NaN	NaN	NaN	0	0	Median	31798000	0	31798000	1	478	1	1	1;2	1		2	9606
AAAAAAALQAK	1	0	Unmodified	955.54508	0.5450795	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3.5	0.5			1	1		14.329	14.329	2	7.5897E-06	5896	DP1063-8	148.38	97.75			10.338	10.518	16.745	2	0	Median	207170000	16770000	190400000	2	193	2	2;3	3;4;5;6;7;8	3		6	9606
AAAEQAISVR	0	1	Unmodified	1014.5458	0.54580778	333	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				15.023	15.023	2	0.0050715	6343	DP1063-7	130.75	67.214			NaN	NaN	NaN	0	0	Median	28075000	0	28075000	3	333	3	4	9	9		1	9606
AAAIGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2264.126	0.12595216	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	2.5	0.5		2	2			20.659	20.659	2;3	2.7930000000000004E-130	14042	DP1063-8	320.48	284.83			NaN	NaN	NaN	0	0	Median	237510000	0	237510000	4	124	4	5;6;7;8	10;11;12;13;14;15;16	16		7	9606
AADALEEQQR	0	1	Unmodified	1129.5364	0.53636531	388	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					14.063	14.063	2	0.0032906	3755	DP1063-6	168.26	99.472			NaN	NaN	NaN	0	0	Median	2218400	0	2218400	5	388	5	9	17;18;19;20	18		4	9606
AAECNIVVTQPR	0	1	Unmodified	1356.682	0.68198369	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				16.033	16.033	2	0.00029372	7728	DP1063-7	147.74	86.915			NaN	NaN	NaN	0	0	Median	21774000	0	21774000	6	345	6	10;11	21;22;23	23		3	9606
AAEDLFVNIR	0	1	Unmodified	1146.6033	0.60332266	567	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				20.169	20.169	2	9.3659E-05	13362	DP1063-7	122.52	95.727			0.56283	0.58395	NaN	1	0	Median	17029000	10663000	6366400	7	567	7	12	24;25;26	24		3	9606
AAGPSLSHTSGGTQSK	1	0	Unmodified	1484.7219	0.72193424	178	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	3	0			1			12.721	12.721	3	0.0016782	3843	DP1063-8	82.483	82.483			5.1885	5.2256	NaN	1	0	Median	15667000	3805200	11862000	8	178	8	13	27;28	28		2	9606
AAGTAAALAFLSQESR	0	1	Acetyl (Protein N-term)	1604.8158	0.81583463	70	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	4.95	0.208				1	21	31.756	31.756	2	3.0842999999999997E-43	19736	DP1063-10	231.52	174.37			86.176	62.155	NaN	1	0	Median	236470000	2540100	233930000	9	70	9	14;15;16;17;18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33;34;35	29;30;31;32;33;34;35;36;37;38;39;40;41;42;43;44;45;46;47;48;49;50;51;52;53;54;55;56;57;58;59;60;61;62;63;64	29		36	9606
AAGTLYTYPENWR	0	1	Acetyl (Protein N-term)	1582.7416	0.74160705	175	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	3.5	0.5			1	1		22.582	22.582	2	3.3105E-30	16654	DP1063-9	219.5	196.18			1.167	1.215	14.931	2	0	Median	28521000	12903000	15618000	10	175	10	36;37	65;66;67;68;69	68		5	9606
AAGVEAAAEVAATEIK	1	0	Acetyl (Protein N-term)	1541.7937	0.7937022	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	3.8	0.98		1		3	1	24.171	24.171	2	3.8549E-43	18563	DP1063-7	228.78	197.19			1.2585	1.2951	9.8195	2	0	Median	39735000	18933000	20802000	11	236	11	38;39;40;41;42	70;71;72;73;74;75;76;77;78	73		9	9606
AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPK	2	0	Acetyl (Protein N-term);Oxidation (M)	3406.6198	0.61984352	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	1	1	2	0		1				24.225	24.225	3	1.8914999999999997E-21	18487	DP1063-7	116.13	102.12			0.96185	0.9926	NaN	1	0	Median	24314000	10400000	13913000	12	236	12	43	79;80;81;82;83	79	270	5	9606
AAGVNVEPFWPGLFAK	1	0	Unmodified	1701.8879	0.88787736	96	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	23.731	23.731	2	1.4585E-10	18204	DP1063-10	175.74	175.74			10.513	6.2364	NaN	1	0	Median	54202000	4865000	49337000	13	96	13	44	84;85;86;87	85		4	9606
AAHSEGNTTAGLDMR	0	1	Oxidation (M)	1545.6842	0.68416853	317	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	3	0			2			13.124	13.124	2;3	0.0016186	4329	DP1063-8	128.36	98.595			2.1255	2.2024	NaN	1	0	Median	30858000	8100300	22758000	14	317	14	45;46	88;89;90;91	90	380	4	9606
AALEALLPYTER	0	1	Unmodified	1345.7242	0.72416608	348	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					21.085	21.085	2	0.024669	12750	DP1063-6	88.681	23.334			NaN	NaN	NaN	0	0	Median	7736600	0	7736600	15	348	15	47	92;93	93		2	9606
AALFNTR	0	1	Unmodified	791.42899	0.42898711	390	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				1		16.285	16.285	2	0.018102	8340	DP1063-9	105.2	33.823			NaN	NaN	NaN	0	0	Median	5945100	0	5945100	16	390	16	48	94	94		1	9606
AALGPSSQNVTEYVVR	0	1	Acetyl (Protein N-term)	1731.8792	0.87916317	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	1	0	0	3	0			1			21.471	21.471	2	2.4496E-14	15077	DP1063-8	180.2	130.9			NaN	NaN	NaN	0	0	Median	43607000	0	43607000	17	190	17	49	95;96;97	97		3	9606
AALMESQGQQQEER	0	1	Oxidation (M)	1619.7209	0.72094797	388	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	0	1	0	1					13.559	13.559	2	2.8525E-10	3123	DP1063-6	175.49	119.45			NaN	NaN	NaN	0	0	Median	1980100	0	1980100	18	388	18	50	98;99	99	482	2	9606
AALQELLSK	1	0	Unmodified	971.56515	0.56514624	290	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	19.136	19.136	2	0.015483	12590	DP1063-10	97.431	38.513			NaN	NaN	NaN	0	0	Median	73486000	0	73486000	19	290	19	51	100;101	101		2	9606
AALSALESFLK	1	0	Unmodified	1148.6441	0.64412484	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.814	22.814	2	0.00024822	14841	DP1063-6	107.21	66.854			3.6979	3.7722	NaN	1	0	Median	6922700	1669100	5253600	20	318	20	52	102;103	102		2	9606
AALVLEDGSVLR	0	1	Acetyl (Protein N-term)	1283.7085	0.70851601	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	1	0	0	1	0	1					24.372	24.372	2	0.02446	16662	DP1063-6	117.01	35.489			2.181	2.2856	NaN	1	0	Median	10068000	3329600	6738200	21	179	21	53	104;105;106	106		3	9606
AANATTNPSQLLPLELVDK	1	0	Acetyl (Protein N-term)	2036.079	0.078985188	584	Q9Y4Y9	LSM5	U6 snRNA-associated Sm-like protein LSm5	yes	yes	1	0	0	5	0					1	24.681	24.681	2	0.00043973	19333	DP1063-10	101.45	70.625			NaN	NaN	NaN	0	0	Median	0	0	0	22	584	22	54	107	107		1	9606
AANPVDFLSK	1	0	Unmodified	1060.5553	0.55530983	448	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				19.402	19.402	2	0.025216	12263	DP1063-7	91.584	47.189			NaN	NaN	NaN	0	0	Median	11280000	0	11280000	23	448	23	55	108	108		1	9606
AAPEEPQQRPPEAVAAAPAGTTSSR	0	2	Unmodified	2488.2306	0.23062824	478	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	2	0		1				15.415	15.415	3	2.4724E-06	6784	DP1063-7	114.92	90.911			NaN	NaN	NaN	0	0	Median	25777000	0	25777000	24	478	24	56	109;110;111	111		3	9606
AAPGAEFAPNKR	1	1	Unmodified	1227.636	0.63601977	397	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	3	0			1			14.317	14.317	3	0.00099797	5824	DP1063-8	77.062	77.062			1.8398	1.8499	NaN	1	0	Median	19434000	6654600	12780000	25	397	25	57	112;113	112		2	9606
AAQAGPTQPGPPR	0	1	Unmodified	1246.6418	0.64183343	501	Q9BUL5	PHF23	PHD finger protein 23	yes	yes	0	0	0	3	0			1			13.73	13.73	2	0.0074446	5166	DP1063-8	73.885	46.996			0.54887	0.56872	NaN	1	0	Median	8772000	6091800	2680300	26	501	26	58	114;115	115		2	9606
AAQDRDQIYR	0	2	Unmodified	1234.6054	0.60544792	301	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	1	2.5	1.5	1			1		13.444	13.444	3	0.0017691	4602	DP1063-9	85.862	67.789			5.9762	6.0636	NaN	1	0	Median	18393000	1720100	16673000	27	301	27	59;60	116;117;118;119	119		4	9606
AASADSTTEGTPADGFTVLSTK	1	0	Unmodified	2126.0015	0.0015227276	67	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		19.304	19.304	2	1.4533E-06	12415	DP1063-9	114.27	73.166			NaN	NaN	NaN	0	0	Median	0	0	0	28	67	28	61	120	120		1	9606
AASITSEVFNK	1	0	Unmodified	1165.5979	0.59790293	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					17.922	17.922	2	0.0088977	8525	DP1063-6	111.06	70.179			NaN	NaN	NaN	0	0	Median	18143000	0	18143000	29	585	29	62	121	121		1	9606
AASTASHRPIK	1	1	Acetyl (Protein N-term)	1179.636	0.63601977	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	1	0	1	4	0				1		12.832	12.832	2	1.9812E-08	3860	DP1063-9	204.79	155.37			NaN	NaN	NaN	0	0	Median	29199000	0	29199000	30	205	30	63	122;123	123		2	9606
AASVHTVGEDTEETPHR	0	1	Unmodified	1834.8446	0.84456858	484	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		2				13.607	13.607	3;4	0.0012446	4458	DP1063-7	112.67	83.03			NaN	NaN	NaN	0	0	Median	17271000	0	17271000	31	484	31	64;65	124;125;126	125		3	9606
AATASAGAGGIDGKPR	1	1	Acetyl (Protein N-term)	1440.7321	0.732105	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	4	0				1		15.213	15.213	2	0.0010139	6755	DP1063-9	123.95	90.72			2.4195	2.2881	NaN	1	0	Median	56245000	17023000	39222000	32	337	32	66	127;128	128		2	9606
AATGEEVSAEDLGGADLHCR	0	1	Unmodified	2056.912	0.91199621	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		17.148	17.148	2;3	7.5842E-260	9534	DP1063-8	423.77	423.77			1.1008	1.146	3.6638	4	0	Median	2283800000	1082700000	1201100000	33	524	33	67;68;69;70	129;130;131;132;133;134;135;136;137;138;139;140;141;142;143;144	136		16	9606
AAVEEGIVLGGGCALLR	0	1	Unmodified	1683.8978	0.89779012	126	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.096	21.096	2	0.0011225	14589	DP1063-8	94.402	66.972			1.0157	1.0525	NaN	1	0	Median	31429000	14640000	16789000	34	126	34	71	145;146	145		2	9606
AAVELEEPEDAR	0	1	Unmodified	1327.6256	0.62557424	76	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		2				16.629	16.629	2	0.033907	8485	DP1063-7	85.355	30.373			NaN	NaN	NaN	0	0	Median	0	0	0	35	76	35	72;73	147;148	147		2	9606
AAVGEEKDINTFVGTPVEK	2	0	Unmodified	2003.0211	0.021135958	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				17.875	17.875	2	3.0594E-15	8488	DP1063-6	179.55	129.92			NaN	NaN	NaN	0	0	Median	22560000	0	22560000	36	211	36	74;75	149;150;151	149		3	9606
AAVIGDVIR	0	1	Unmodified	912.53927	0.53926584	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				17.787	17.787	2	0.0075137	10055	DP1063-7	84.498	5.0292			15.355	15.55	NaN	1	0	Median	109930000	6362400	103560000	37	531	37	76	152;153;154	153		3	9606
AAVLFATDIAAR	0	1	Unmodified	1217.6768	0.67682195	360	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				19.959	19.959	2	0.0051003	13058	DP1063-7	114.97	41.304			NaN	NaN	NaN	0	0	Median	15009000	0	15009000	38	360	38	77	155;156	155		2	9606
AAVPSGASTGIYEALELR	0	1	Unmodified	1803.9367	0.93667805	104	P06733;P13929;P09104	ENO1;ENO3;ENO2	Alpha-enolase;Beta-enolase;Gamma-enolase	yes	no	0	0	0	4	0				1		21.47	21.47	2	0.0018361	15359	DP1063-9	88.552	88.552			0.64924	0.67913	NaN	1	0	Median	11466000	6869800	4596200	39	104	39	78	157;158	157		2	9606
AAYFGIYDTAK	1	0	Unmodified	1218.5921	0.59208927	93	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	4	0				1		19.396	19.396	2	1.3998E-05	12505	DP1063-9	143.37	129.26			2.4978	2.5673	NaN	1	0	Median	93313000	26311000	67002000	40	93	40	79	159;160;161;162	159		4	9606
AAYFGVYDTAK	1	0	Unmodified	1204.5764	0.57643921	133;132	P12236;P12235	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	2.5	1.5	1			1		18.631	18.631	2	0.051423	9519	DP1063-6	78.098	42.19			NaN	NaN	NaN	0	0	Median	23942000	0	23942000	41	133;132	41	80;81	163;164	163		2	9606
ACQSIYPLHDVFVR	0	1	Unmodified	1703.8454	0.84536062	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				2		19.588	19.588	2;3	1.3363E-12	12820	DP1063-9	199.19	164.68			7.3422	7.6803	NaN	1	0	Median	129090000	10738000	118350000	42	254	42	82;83	165;166;167;168;169;170	170		6	9606
ACTELGIR	0	1	Unmodified	918.4593	0.45930096	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		15.818	15.818	2	1.2905E-05	7387	DP1063-7	143.02	28.298			0.90401	0.92435	6.279	2	0	Median	276910000	143600000	133310000	43	130	43	84;85	171;172;173;174;175;176;177	172		7	9606
ADATNVNNWHWTER	0	1	Unmodified	1712.7655	0.76553039	80	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				2		17.917	17.917	2;3	0.00074847	10515	DP1063-9	112.15	81.249			0.76882	0.80422	NaN	1	0	Median	34019000	20955000	13064000	44	80	44	86;87	178;179;180;181	178		4	9606
ADEAYLIGR	0	1	Unmodified	1006.5084	0.50835964	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		17.724	17.724	2	3.0832E-10	10007	DP1063-7	157.58	105.79			0.87517	0.8981	0.53537	2	0	Median	175170000	87987000	87180000	45	130	45	88;89	182;183;184;185;186;187	184		6	9606
ADEGISFR	0	1	Unmodified	893.4243	0.42429566	341	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	16.737	16.737	2	0.0020397	9449	DP1063-10	97.798	60.24			1.8016	1.2994	NaN	1	0	Median	25549000	8816100	16733000	46	341	46	90	188;189;190	189		3	9606
ADFAQACQDAGVR	0	1	Unmodified	1407.6201	0.62011171	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.559	16.559	2	5.0449E-10	8657	DP1063-9	175.49	175.49			1.0058	1.0421	27.335	5	0	Median	937550000	468210000	469340000	47	130	47	91;92;93;94;95	191;192;193;194;195;196;197;198;199;200;201;202;203;204;205;206;207;208	208		18	9606
ADGQVAELLLR	0	1	Acetyl (Protein N-term)	1225.6667	0.6666512	566	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	1	0	0	3.5	0.5			1	1		24.159	24.159	2	0.00014504	18456	DP1063-8	151.22	114.02			1.169	1.2113	NaN	1	0	Median	10427000	4018500	6408600	48	566	48	96;97	209;210;211;212	209		4	9606
ADGYEPPVQESV	0	0	Unmodified	1289.5776	0.57756142	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.608	18.608	2	0.0048093	11491	DP1063-9	117.53	78.273			NaN	NaN	NaN	0	0	Median	0	0	0	49	254	49	98	213;214	214		2	9606
ADGYVLEGK	1	0	Unmodified	950.47091	0.4709115	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	15.975	15.975	2	0.0051123	8434	DP1063-10	88.177	55.365			12.02	7.1308	NaN	1	0	Median	77791000	7747900	70044000	50	267	50	99	215;216	216		2	9606
ADGYVLEGKELEFYLR	1	1	Unmodified	1900.9571	0.95707914	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	21.507	21.507	2	1.082E-05	15605	DP1063-10	151.55	112.76			NaN	NaN	NaN	0	0	Median	0	0	0	51	267	51	100	217	217		1	9606
ADHSFSDGVPSDSVEAAK	1	0	Acetyl (Protein N-term)	1859.8174	0.81735077	487	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	1	0	0	3	0			1			17.708	17.708	2	3.0359E-06	10172	DP1063-8	119.87	96.352			NaN	NaN	NaN	0	0	Median	0	0	0	52	487	52	101	218	218		1	9606
ADILEDKDGK	2	0	Unmodified	1102.5506	0.55061839	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	2.5	0.5		1	1			14.096	14.096	2	8.2569E-07	5103	DP1063-7	144.65	116.43			1.1738	1.1765	12.184	2	0	Median	85675000	38274000	47401000	53	236	53	102;103	219;220;221;222;223;224	221		6	9606
ADKDYHFKVDNDENEHQLSLR	2	1	Unmodified	2572.1942	0.19424273	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	3.4	1.36	2	3		7	3	18.061	18.061	2;3;4;5	1.518E-113	8290	DP1063-9	315.44	290.94			181.3	189.69	NaN	1	0	Median	4121999999.9999995	14509000	4107499999.9999995	54	105	54	104;105;106;107;108;109;110;111;112;113;114;115;116;117;118	225;226;227;228;229;230;231;232;233;234;235;236;237;238;239;240;241;242;243;244;245;246;247;248;249;250;251;252	243		28	9606
ADKEAAFDDAVEER	1	1	Acetyl (Protein N-term)	1606.7111	0.71109479	347	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	1	0	1	4	0				2		18.227	18.227	2	0.000266	10929	DP1063-9	130.1	94.92			NaN	NaN	NaN	0	0	Median	0	0	0	55	347	55	119;120	253;254	253		2	9606
ADLDKLNIDSIIQR	1	1	Acetyl (Protein N-term)	1654.889	0.88899957	194	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	4.04	0.204				22	1	25.986	25.986	2;3	7.060500000000001E-68	16785	DP1063-9	300.27	230.17			NaN	NaN	NaN	0	0	Median	345690000	0	345690000	56	194	56	121;122;123;124;125;126;127;128;129;130;131;132;133;134;135;136;137;138;139;140;141;142;143	255;256;257;258;259;260;261;262;263;264;265;266;267;268;269;270;271;272;273;274;275;276;277;278;279	257		25	9606
ADLEMQIESLTEELAYLK	1	0	Oxidation (M)	2111.0344	0.03440276	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	3	0			1			26.743	26.743	2	0.03593	21425	DP1063-8	84.297	51.106		+	NaN	NaN	NaN	0	0	Median	2558700	2558700	0	57	16	57	144	280;281	280	8	2	9606
ADLEMQIESLTEELAYLKK	2	0	Oxidation (M)	2239.1294	0.12936578	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	1	2	0		1				24.608	24.608	3	0.00067347	19023	DP1063-7	119.51	98.198		+	NaN	NaN	NaN	0	0	Median	9657000	9657000	0	58	16	58	145	282;283	282	8	2	9606
ADLINNLGTIAK	1	0	Unmodified	1241.698	0.69795133	113;110	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2	0		2				19.748	19.748	2	0.021246	12794	DP1063-7	105.4	38.829			NaN	NaN	NaN	0	0	Median	0	0	0	59	110;113	59	146;147	284;285	285		2	9606
ADNEKLDNQR	1	1	Acetyl (Protein N-term)	1243.5793	0.57929275	37	O00629	KPNA4	Importin subunit alpha-3	yes	yes	1	0	1	3	0			1			13.872	13.872	2	0.003512	5252	DP1063-8	173.37	123.95			NaN	NaN	NaN	0	0	Median	18669000	0	18669000	60	37	60	148	286	286		1	9606
ADQLYLENIDEFVTDQNK	1	0	Acetyl (Protein N-term)	2196.0223	0.02225817	393	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	1	0	0	3	0			1			25.844	25.844	2	0.00015978	20434	DP1063-8	132.65	81.512			NaN	NaN	NaN	0	0	Median	3433400	0	3433400	61	393	61	149	287	287		1	9606
ADRDESSPYAAMLAAQDVAQR	0	2	Oxidation (M)	2280.0441	0.044073019	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	1	5	0					1	17.626	17.626	3	6.663E-07	10566	DP1063-10	121.21	93.885			4.6282	4.6973	NaN	1	0	Median	49942000	9586800	40355000	62	271	62	150	288;289;290;291	291	327	4	9606
ADRDESSPYAAMLAAQDVAQR	0	2	Unmodified	2264.0492	0.049158397	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	19.669	19.669	3	0.0011544	13259	DP1063-10	102.45	72.868			NaN	NaN	NaN	0	0	Median	11252000	0	11252000	63	271	62	151	292;293	292		2	9606
ADSLVEGTSSR	0	1	Unmodified	1120.536	0.53603095	451	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				14.633	14.633	2	0.0080846	5840	DP1063-7	115.71	42.454			NaN	NaN	NaN	0	0	Median	6443300	0	6443300	64	451	63	152	294	294		1	9606
ADVEEEFLAFR	0	1	Unmodified	1324.6299	0.62993134	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				22.193	22.193	2	1.5248E-05	14071	DP1063-6	162.88	114.32			NaN	NaN	NaN	0	0	Median	15059000	0	15059000	65	211	64	153;154	295;296;297;298	295		4	9606
ADVEEEFLAFRK	1	1	Unmodified	1452.7249	0.72489436	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				20.146	20.146	3	0.046362	13199	DP1063-7	63.944	41.868			NaN	NaN	NaN	0	0	Median	11789000	0	11789000	66	211	65	155	299	299		1	9606
ADVIQATGDAICIFR	0	1	Unmodified	1648.8243	0.82429083	346	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	2	0		1				22.25	22.25	2	2.7206E-05	16065	DP1063-7	148.78	86.481			NaN	NaN	NaN	0	0	Median	0	0	0	67	346	66	156	300	300		1	9606
AEAEAQAEELSFPR	0	1	Unmodified	1546.7264	0.72635092	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.07	0.457	1	25	1	1		23.896	23.896	2;3	2.1748E-69	11381	DP1063-9	304.89	304.89			0.85641	0.88117	11.583	6	0	Median	1577999999.9999998	806160000	771840000	68	130	67	157;158;159;160;161;162;163;164;165;166;167;168;169;170;171;172;173;174;175;176;177;178;179;180;181;182;183;184	301;302;303;304;305;306;307;308;309;310;311;312;313;314;315;316;317;318;319;320;321;322;323;324;325;326;327;328;329;330;331;332;333;334;335;336;337;338;339;340;341;342;343;344;345;346	343		46	9606
AEAESLYQSK	1	0	Unmodified	1124.535	0.53496832	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.67	1.25	1		1	1		15.074	15.074	2	6.9644E-09	6878	DP1063-8	224.36	160.15		+	NaN	NaN	NaN	0	0	Median	79139000	79139000	0	69	88	68	185;186;187	347;348;349;350;351;352	350		6	9606
AEAGAGLSETVTETTVTVTTEPENR	0	1	Acetyl (Protein N-term)	2604.2402	0.24024945	66	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	1	0	0	5	0					1	22.356	22.356	3	1.8305E-08	16649	DP1063-10	132.36	101			NaN	NaN	NaN	0	0	Median	6276300	0	6276300	70	66	69	188	353;354	353		2	9606
AEAGAGSATEFQFR	0	1	Unmodified	1440.6634	0.66335673	219	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	5	0					1	18.102	18.102	2	0.00021424	11145	DP1063-10	150.04	150.04			3.0725	2.2161	NaN	1	0	Median	26531000	6646600	19884000	71	219	70	189	355;356;357;358	356		4	9606
AEAGDNLGALVR	0	1	Unmodified	1184.6149	0.61494998	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		18.117	18.117	2	0.0012186	10823	DP1063-9	109.66	66.222			1.7323	1.8121	NaN	1	0	Median	26612000	10422000	16190000	72	226	71	190	359	359		1	9606
AECRPAASENYMR	0	2	Oxidation (M)	1569.6664	0.66640998	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	1	1	4	0				1		13.216	13.216	3	0.014564	4266	DP1063-9	99.941	87.102			NaN	NaN	NaN	0	0	Median	23918000	0	23918000	73	138	72	191	360;361	361	170	2	9606
AECRPAASENYMR	0	2	Unmodified	1553.6715	0.67149535	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		14.345	14.345	3	0.001351	5769	DP1063-9	114.7	93.155			NaN	NaN	NaN	0	0	Median	5164100	0	5164100	74	138	72	192	362	362		1	9606
AEDKEWMPVTK	2	0	Oxidation (M)	1348.6333	0.63330216	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	1	4	0				2		14.84	14.84	2;3	9.189E-05	6429	DP1063-9	105.13	105.13			4.0563	4.291	3.1169	2	0	Median	71253000	13962000	57291000	75	141	73	193;194	363;364;365;366;367	367	173	5	9606
AEEDAALQAK	1	0	Unmodified	1044.5088	0.50875357	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				14.083	14.083	2	0.0014497	3746	DP1063-6	143.01	80.293			NaN	NaN	NaN	0	0	Median	21691000	0	21691000	76	365	74	195;196	368;369;370;371	369		4	9606
AEEGIAAGGVMDVNTALQEVLK	1	0	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	169	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	5	0					1	25.993	25.993	2	4.7078E-14	20718	DP1063-10	141.97	94.929			NaN	NaN	NaN	0	0	Median	0	0	0	77	169	75	197	372	372	196	1	9606
AEEILEK	1	0	Unmodified	830.43855	0.43854874	297	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	14.741	14.741	2	0.0043002	7050	DP1063-10	97.602	30.609			5.4251	3.2183	NaN	1	0	Median	69741000	10562000	59180000	78	297	76	198	373;374;375	373		3	9606
AEFEDQDDEAR	0	1	Unmodified	1323.5215	0.5215031	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1.5	0.5	1	1				14.893	14.893	2	1.5421E-05	6107	DP1063-7	157.96	136.51			NaN	NaN	NaN	0	0	Median	28922000	0	28922000	79	383	77	199;200	376;377;378	377		3	9606
AEFVEVTK	1	0	Unmodified	921.48075	0.48074791	12	CON__P02769			yes	yes	0	0	0	2.33	0.943	4	3	7	1		23.17	23.17	1;2	3.8202E-11	8198	DP1063-8	234.63	138.84		+	NaN	NaN	NaN	0	0	Median	39103000000	39103000000	0	80	12	78	201;202;203;204;205;206;207;208;209;210;211;212;213;214;215	379;380;381;382;383;384;385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400;401;402;403;404;405;406;407;408;409	394		31	
AEFVEVTKLVTDLTK	2	0	Unmodified	1691.9346	0.93455278	12	CON__P02769			yes	yes	0	0	1	2.29	1.03	2	2	2	1		22.473	22.473	2;3	7.344200000000001E-122	16271	DP1063-8	359.73	289.01		+	NaN	NaN	NaN	0	0	Median	312860000	312860000	0	81	12	79	216;217;218;219;220;221;222	410;411;412;413;414;415;416;417;418;419;420;421;422;423;424	419		15	
AEGPGRGDEPSPS	0	1	Unmodified	1254.5477	0.54765827	536	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	1	3	0			1			13.324	13.324	2	0.0089503	4661	DP1063-8	88.134	68.372			1.6695	1.7299	NaN	1	0	Median	10122000	4219100	5902600	82	536	80	223	425;426;427	426		3	9606
AEKDAEQKIEEQK	3	0	Unmodified	1544.7682	0.76821573	432	Q6PII3	CCDC174	Coiled-coil domain-containing protein 174	yes	yes	0	0	2	3	0			1			13.011	13.011	3	4.7215E-07	4217	DP1063-8	162.72	131.72			NaN	NaN	NaN	0	0	Median	4437100	0	4437100	83	432	81	224	428	428		1	9606
AELDDTPMR	0	1	Oxidation (M)	1062.4652	0.4651742	163	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	2	0		1				14.339	14.339	2	0.0081168	5338	DP1063-7	78.334	36.226			0.31354	0.32352	NaN	1	0	Median	32967000	24297000	8669700	84	163	82	225	429	429	192	1	9606
AELNEFLTR	0	1	Unmodified	1091.5611	0.56112349	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4.5	0.5				1	1	19.243	19.243	2	6.3319E-15	12290	DP1063-9	174.52	127.53			3.2211	3.3694	NaN	1	0	Median	136480000	29614000	106860000	85	164	83	226;227	430;431;432;433;434;435	432		6	9606
AENNSEVGASGYGVPGPTWDR	0	1	Unmodified	2161.9665	0.96647463	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				19.1	19.1	2	8.0924E-11	11884	DP1063-7	135.23	96.275			NaN	NaN	NaN	0	0	Median	0	0	0	86	345	84	228	436	436		1	9606
AEPASVAAESLAGSR	0	1	Acetyl (Protein N-term)	1456.7158	0.71578623	529	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	1	0	0	4	0				1		20.501	20.501	2	1.5215E-09	13941	DP1063-9	168.83	122.01			NaN	NaN	NaN	0	0	Median	31320000	0	31320000	87	529	85	229	437;438	438		2	9606
AEPYCSVLPGFTFIQHLPLSER	0	1	Unmodified	2560.2784	0.27843005	500	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				23.612	23.612	3	0.022007	17786	DP1063-7	68.401	46.786			NaN	NaN	NaN	0	0	Median	9233600	0	9233600	88	500	86	230	439;440	439		2	9606
AEQDEAEKLQR	1	1	Unmodified	1315.6368	0.63680763	392	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	1	4	0				1		13.594	13.594	3	0.0023582	4725	DP1063-9	125.74	89.151			NaN	NaN	NaN	0	0	Median	11159000	0	11159000	89	392	87	231	441;442	442		2	9606
AESDWDTVTVLR	0	1	Acetyl (Protein N-term)	1432.6834	0.68342347	64	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	1	0	0	5	0					1	22.973	22.973	2	4.4837E-05	17416	DP1063-10	152.97	119.6			NaN	NaN	NaN	0	0	Median	4629700	0	4629700	90	64	88	232	443	443		1	9606
AESSDKLYR	1	1	Acetyl (Protein N-term)	1109.5353	0.53530267	119	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	1	2	0		1				15.451	15.451	2	0.019405	6893	DP1063-7	68.224	27.194			3.3654	3.5239	NaN	1	0	Median	14861000	3469600	11392000	91	119	89	233	444	444		0	9606
AETECQNTEYQQLLDIK	1	0	Unmodified	2081.9575	0.95754942	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.33	1.25	1	1		1		20.404	20.404	2	3.7097E-98	13831	DP1063-9	275.35	196.8		+	NaN	NaN	NaN	0	0	Median	23190000	23190000	0	92	16	90	234;235;236	445;446;447;448	448		4	9606
AETLEFNDVYQEVK	1	0	Acetyl (Protein N-term)	1725.8097	0.8097462	346	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	3.67	1.25		1		1	1	23.074	23.074	2	3.6646E-14	17132	DP1063-7	201.46	168.6			NaN	NaN	NaN	0	0	Median	30779000	0	30779000	93	346	91	237;238;239	449;450;451;452;453	450		5	9606
AEVNTIPGFDGVVK	1	0	Unmodified	1444.7562	0.75619449	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0		1				19.839	19.839	2	0.0015518	12871	DP1063-7	122.69	84.123			0.88975	0.91682	NaN	1	0	Median	31986000	14372000	17614000	94	94	92	240	454;455;456	454		3	9606
AEVQVLVLDGR	0	1	Acetyl (Protein N-term)	1239.6823	0.68230126	203	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	5	0					1	23.339	23.339	2	0.0035928	17780	DP1063-10	121.61	85.183			10.03	7.2343	NaN	1	0	Median	92092000	7492000	84600000	95	203	93	241	457;458	457		2	9606
AEVQVLVLDGRGHLLGR	0	2	Acetyl (Protein N-term)	1873.0534	0.05337956	203	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	1	5	0					1	21.876	21.876	3	0.036636	16104	DP1063-10	56.599	20.708			NaN	NaN	NaN	0	0	Median	2979000	0	2979000	96	203	94	242	459	459		1	9606
AEYLASIFGTEK	1	0	Acetyl (Protein N-term)	1369.6765	0.67654718	331	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	0	4	0				1		26.884	26.884	2	0.0018923	21621	DP1063-9	122.69	82.754			NaN	NaN	NaN	0	0	Median	1311500	0	1311500	97	331	95	243	460;461	460		2	9606
AFADAMEVIPSTLAENAGLNPISTVTELR	0	1	Oxidation (M)	3045.5329	0.53286642	233	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	3	0			1			24.141	24.141	3	2.7809E-05	18471	DP1063-8	83.834	64.342			NaN	NaN	NaN	0	0	Median	7462600	0	7462600	98	233	96	244	462	462	267	1	9606
AFAMIIDKLEEDISSSMTNSTAASRPPVTLR	1	2	2 Oxidation (M)	3382.6749	0.67485598	399	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	2	2	4	0				1		22.61	22.61	4	0.00098702	16747	DP1063-9	62.032	34.608			NaN	NaN	NaN	0	0	Median	4243500	0	4243500	99	399	97	245	463	463	491;492	1	9606
AFAVGVQQVLLK	1	0	Unmodified	1271.7602	0.76015765	79	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				20.61	20.61	2	0.0065801	13920	DP1063-7	109.71	80.987			NaN	NaN	NaN	0	0	Median	9525000	0	9525000	100	79	98	246	464;465	464		2	9606
AFENDVDALCNLR	0	1	Unmodified	1535.7038	0.70384134	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.67	0.471			1	2		20.36	20.36	2	9.0482E-32	13642	DP1063-8	219.5	196.12			0.99874	1.0349	NaN	1	0	Median	287010000	132280000	154730000	101	95	99	247;248;249	466;467;468;469;470;471;472;473	468		8	9606
AFGYYGPLR	0	1	Unmodified	1042.5236	0.52361577	325	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	5	0					1	19.178	19.178	2	0.0032428	12617	DP1063-10	91.041	38.638			3.7944	2.7367	NaN	1	0	Median	11299000	2705900	8593200	102	325	100	250	474;475	474		2	9606
AFHNEAQVNPERK	1	1	Unmodified	1538.759	0.75898845	149	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	1	3	0			1			13.032	13.032	3	0.0073581	4164	DP1063-8	58.32	58.32			1.7911	1.801	NaN	1	0	Median	12134000	4482600	7651200	103	149	101	251	476;477	477		2	9606
AFIPAIDSFGFETDLR	0	1	Unmodified	1797.8938	0.8937506	391	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				24.069	24.069	2	0.014261	18453	DP1063-7	91.914	61.087			NaN	NaN	NaN	0	0	Median	4837700	0	4837700	104	391	102	252	478	478		1	9606
AFITNIPFDVK	1	0	Unmodified	1263.6863	0.68632401	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0.816		1	1	1		21.636	21.636	2	4.0605E-07	15267	DP1063-7	157.34	128.17			1.0833	1.1163	5.9582	3	0	Median	86025000	41626000	44399000	105	236	103	253;254;255	479;480;481;482;483;484;485;486	481		8	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	1	0	Unmodified	2751.4596	0.45956554	98	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				2		22.62	22.62	2;3	5.1248E-58	16650	DP1063-9	216.02	216.02			6.0771	6.2462	NaN	1	0	Median	144190000	12696000	131490000	106	98	104	256;257	487;488;489;490;491;492	488		6	9606
AFLIEEQK	1	0	Unmodified	976.52295	0.52294707	223	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	17.705	17.705	2	0.00060342	10620	DP1063-10	134.06	99.164			12.011	7.1252	NaN	1	0	Median	108360000	8215200	100140000	107	223	105	258	493;494;495	494		3	9606
AFMGTPVQK	1	0	Oxidation (M)	993.49535	0.49535211	211	P46013	MKI67	Antigen KI-67	yes	no	0	1	0	1.5	0.5	1	1				14.365	14.365	2	0.0032386	4127	DP1063-6	143.89	102.23			NaN	NaN	NaN	0	0	Median	105770000	0	105770000	108	211	106	259;260	496;497;498;499	497	235	4	9606
AFSSPQEEEEAGFTGR	0	1	Unmodified	1740.7591	0.75910761	378	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	3.33	0.943		1		2		17.771	17.771	2	8.5914E-09	10026	DP1063-7	161.76	128.53			NaN	NaN	NaN	0	0	Median	35423000	0	35423000	109	378	107	261;262;263	500;501;502;503	501		4	9606
AFVAIGDYNGHVGLGVK	1	0	Unmodified	1715.8995	0.89950468	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				2		19.347	19.347	2;3	1.1508E-09	12475	DP1063-9	160.56	104.75			4.4747	4.5992	NaN	1	0	Median	70283000	9149200	61134000	110	141	108	264;265	504;505;506;507;508;509	508		6	9606
AFVDFLSDEIKEER	1	1	Unmodified	1696.8308	0.83081599	343	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	4.5	0.5				2	2	21.633	21.633	2;3	3.7081E-33	15405	DP1063-9	225.63	225.63			22.414	21.197	NaN	1	0	Median	214390000	4196800	210190000	111	343	109	266;267;268;269	510;511;512;513;514;515;516;517;518	516		9	9606
AFVHWYVGEGMEEGEFSEAR	0	1	Oxidation (M)	2345.0059	0.005896599	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	3.67	0.471			1	2		19.823	19.823	2;3	2.7003E-10	12918	DP1063-8	155.66	143.28			3.0527	3.1781	7.2633	2	0	Median	183790000	43884000	139900000	112	310;434;492	110	270;271;272	519;520;521;522;523;524;525;526;527;528;529;530;531	520	364	13	9606
AFVHWYVGEGMEEGEFSEAR	0	1	Unmodified	2329.011	0.010981977	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			20.81	20.81	3	2.6591E-06	14297	DP1063-8	116.87	103.28			4.2061	4.3583	NaN	1	0	Median	36056000	5925800	30130000	113	310;434;492	110	273	532	532		1	9606
AFYGDTLVTGFAR	0	1	Unmodified	1416.7038	0.70376498	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.17	0.373			5	1		24.222	24.222	2;3	1.6379E-42	14978	DP1063-9	231.38	187.06			1.1719	1.2143	33.716	3	0	Median	756050000	342640000	413410000	114	524	111	274;275;276;277;278;279	533;534;535;536;537;538;539;540;541;542;543;544;545	545		13	9606
AFYPEEISSMVLTK	1	0	Oxidation (M)	1629.796	0.79601039	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			20.677	20.677	2	0.0020576	14222	DP1063-8	88.338	88.338			4.7242	4.758	NaN	1	0	Median	98485000	17527000	80957000	115	124	112	280	546;547;548;549	549	134	4	9606
AFYPEEISSMVLTK	1	0	Unmodified	1613.8011	0.80109577	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			22.29	22.29	2	0.0069871	16067	DP1063-8	103.21	67.561			NaN	NaN	NaN	0	0	Median	38049000	0	38049000	116	124	112	281	550;551	551		2	9606
AGAAGGPEEEAEKPVK	2	0	Unmodified	1538.7577	0.75765105	461	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					1	13.636	13.636	3	8.198E-05	5682	DP1063-10	138.21	104.9			NaN	NaN	NaN	0	0	Median	8818700	0	8818700	117	461	113	282	552	552		1	9606
AGAIAPCEVTVPAQNTGLGPEK	1	0	Unmodified	2179.0943	0.094317676	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		18.503	18.503	2	1.713E-81	11279	DP1063-9	263.83	223.76			7.2157	7.4165	NaN	1	0	Median	94212000	10714000	83498000	118	98	114	283	553;554;555;556	553		4	9606
AGEAPTENPAPPTQQSSAE	0	0	Unmodified	1880.8388	0.8388145	144	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	3	0			1			15.714	15.714	2	0.0031401	7685	DP1063-8	108.23	72.458			NaN	NaN	NaN	0	0	Median	0	0	0	119	144	115	284	557	557		1	9606
AGEKVEKPDTK	3	0	Acetyl (Protein N-term)	1242.6456	0.6455814	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	1	0	2	4	0				1		12.842	12.842	3	0.023423	3824	DP1063-9	64.121	35.163			NaN	NaN	NaN	0	0	Median	6516400	0	6516400	120	336	116	285	558;559	559		2	9606
AGELTEDEVER	0	1	Unmodified	1246.5677	0.56772501	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	15.623	15.623	2	1.076E-05	8023	DP1063-10	145.9	115.34			3.2676	2.3568	NaN	1	0	Median	110180000	24173000	86005000	121	273	117	286	560;561;562;563	560		4	9606
AGFAGDDAPR	0	1	Unmodified	975.44101	0.44100836	252;308	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P68133;P68032;P63267;P62736	ACTG1;ACTB;POTEE;POTEF;POTEI;POTEJ;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	4	0				1		14.853	14.853	2	0.0086202	6363	DP1063-9	78.113	58.336			0.8006	0.83746	NaN	1	0	Median	59210000	32277000	26934000	122	252;308	118	287	564;565;566;567	566		4	9606
AGLELLSDQGYR	0	1	Acetyl (Protein N-term)	1362.6779	0.67794416	525	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	1	0	0	4.5	0.5				1	1	23.431	23.431	2	4.3652E-13	17668	DP1063-9	214.83	164.79			NaN	NaN	NaN	0	0	Median	35381000	0	35381000	123	525	119	288;289	568;569;570	570		3	9606
AGLESGAEPGDGDSDTTK	1	0	Unmodified	1705.7279	0.72786706	63	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	3	0			1			14.858	14.858	2	5.1032E-08	6610	DP1063-8	139.74	106.89			NaN	NaN	NaN	0	0	Median	0	0	0	124	63	120	290	571	571		1	9606
AGLQFPVGR	0	1	Unmodified	943.52395	0.52395013	91;122;121	Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q71UI9;P0C0S5;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA;H2AFV;H2AFZ;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	5	0					1	18.562	18.562	2	0.00057912	11708	DP1063-10	120.49	66.934			3.0101	2.1711	NaN	1	0	Median	503340000	124580000	378760000	125	91;121;122	121	291	572;573;574;575	573		4	9606
AGLSPANCQSDR	0	1	Unmodified	1274.5673	0.56734786	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	0		1				13.958	13.958	2	0.00016511	4881	DP1063-7	151.22	112.94			NaN	NaN	NaN	0	0	Median	12169000	0	12169000	126	383	122	292	576;577	576		2	9606
AGLTLFVGR	0	1	Acetyl (Protein N-term)	974.55492	0.5549159	538	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	1	0	0	2	0		1				24.359	24.359	2	0.0061279	18810	DP1063-7	101.33	48.691			NaN	NaN	NaN	0	0	Median	3721200	0	3721200	127	538	123	293	578;579	578		2	9606
AGMMGGGEAPQVTASKAQASLLSR	1	1	Oxidation (M)	2333.1468	0.14676395	1	A0A1B0GUW6			yes	yes	0	1	1	2	0		1				15.911	15.911	3	0.024946	7546	DP1063-7	68.189	28.285			NaN	NaN	NaN	0	0	Median	0	0	0	128	1	124	294	580	580	0	1	9606
AGNLGGGVVTIER	0	1	Unmodified	1241.6728	0.67279921	189	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	5	0					1	17.418	17.418	2	0.00046471	10278	DP1063-10	133.89	84.475			2.8293	2.0406	NaN	1	0	Median	23439000	8158900	15280000	129	189	125	295	581;582;583	583		3	9606
AGPGSLELCGLPSQK	1	0	Unmodified	1512.7606	0.76062794	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1		1		1		18.793	18.793	2	3.0893E-17	11447	DP1063-7	196.02	138.67			NaN	NaN	NaN	0	0	Median	139050000	0	139050000	130	381	126	296;297	584;585;586;587	585		4	9606
AGPNASIISLK	1	0	Unmodified	1069.6132	0.61315906	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				18.002	18.002	2	0.018518	10368	DP1063-7	96.143	54.267			NaN	NaN	NaN	0	0	Median	29391000	0	29391000	131	514	127	298	588;589	589		2	9606
AGPQPLALQLEQLLNPR	0	1	Acetyl (Protein N-term)	1899.0578	0.057796236	543	Q9NY61	AATF	Protein AATF	yes	yes	1	0	0	2	0		1				27.674	27.674	2	5.8296E-07	22531	DP1063-7	153.81	122.98			NaN	NaN	NaN	0	0	Median	2871400	0	2871400	132	543	128	299	590;591;592	590		3	9606
AGPQPLALQLEQLLNPRPSEADPEADPEEATAAR	0	2	Acetyl (Protein N-term)	3635.8067	0.80673309	543	Q9NY61	AATF	Protein AATF	yes	yes	1	0	1	2	0		1				25.757	25.757	3	4.2744E-06	20446	DP1063-7	75.182	56.443			NaN	NaN	NaN	0	0	Median	10941000	0	10941000	133	543	129	300	593;594;595;596	595		4	9606
AGPVAVQVK	1	0	Unmodified	867.5178	0.51780212	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				14.868	14.868	2	0.021138	4739	DP1063-6	94.006	48.054			NaN	NaN	NaN	0	0	Median	107830000	0	107830000	134	365	130	301;302	597;598;599	598		3	9606
AGTATSPAGSSPAVAGGTQR	0	1	Unmodified	1742.8547	0.85473933	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.75	0.829	2	1	1			14.39	14.39	2	6.5468E-08	5418	DP1063-7	153.32	119.43			NaN	NaN	NaN	0	0	Median	14239000	0	14239000	135	365	131	303;304;305;306	600;601;602;603;604;605;606;607	606		8	9606
AGTDSPVSCASVTEER	0	1	Unmodified	1664.7312	0.7311783	428	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		2				15.996	15.996	2	0.00023657	7670	DP1063-7	116.24	85.414			NaN	NaN	NaN	0	0	Median	0	0	0	136	428	132	307;308	608;609	609		2	9606
AGTHILCIK	1	0	Unmodified	1011.5535	0.55353569	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			15.451	15.451	2	0.00088789	6928	DP1063-7	100.02	67.125			0.99385	1.0125	2.2436	2	0	Median	150250000	80800000	69446000	137	130	133	309;310	610;611;612;613;614;615	611		6	9606
AGTVVLDDVELR	0	1	Acetyl (Protein N-term)	1327.6983	0.69834526	168	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	1	0	0	2	0		1				23.129	23.129	2	0.0064708	17199	DP1063-7	94.616	36.758			NaN	NaN	NaN	0	0	Median	0	0	0	138	168	134	311	616	616		1	9606
AGVFPYR	0	1	Acetyl (Protein N-term)	850.43374	0.43373813	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	1	0	0	1	0	1					21.041	21.041	1	0.04377	12551	DP1063-6	47.045	14.575			NaN	NaN	NaN	0	0	Median	4548200	0	4548200	139	431	135	312	617	617		1	9606
AGVNTVTTLVENK	1	0	Unmodified	1344.7249	0.72489436	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		18.045	18.045	2	1.9689999999999998E-44	10621	DP1063-9	242.35	164.81			9.8533	10.128	NaN	1	0	Median	165580000	16377000	149200000	140	280	136	313	618;619	618		2	9606
AGVNTVTTLVENKK	2	0	Unmodified	1472.8199	0.81985737	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				2		16.645	16.645	2;3	3.4963E-11	8789	DP1063-9	189.57	130.87			14.684	15.534	NaN	1	0	Median	117990000	7905800	110090000	141	280	137	314;315	620;621;622	621		3	9606
AHIAQLCEK	1	0	Unmodified	1068.5386	0.53861391	328	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1	0	1					13.71	13.71	2	0.013668	3302	DP1063-6	67.494	67.494			1.0715	1.0931	NaN	1	0	Median	3860600	1817800	2042800	142	328	138	316	623	623		0	9606
AHLMEIQVNGGTVAEK	1	0	Oxidation (M)	1711.8563	0.85631924	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	3	1.41	1			2		15.944	15.944	2;3	9.9422E-25	7846	DP1063-9	218.11	189.16			15.605	16.039	NaN	1	0	Median	69015000	3304500	65711000	143	201	139	317;318;319	624;625;626;627;628;629;630	630	226	7	9606
AHQVVEDGYEFFAK	1	0	Unmodified	1638.7678	0.7678218	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.78	0.629			3	5	1	19.668	19.668	2;3	2.018E-11	11296	DP1063-9	189.24	156.05			NaN	NaN	NaN	0	0	Median	620090000	0	620090000	144	194;264;265	140	320;321;322;323;324;325;326;327;328	631;632;633;634;635;636;637;638;639;640;641;642	637		12	9606
AHQVVEDGYEFFAKR	1	1	Unmodified	1794.8689	0.86893283	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.6	0.49			2	3		18.102	18.102	2;3;4	8.5525E-06	10665	DP1063-8	148.18	117.6			NaN	NaN	NaN	0	0	Median	107670000	0	107670000	145	194;264;265	141	329;330;331;332;333	643;644;645;646;647;648;649;650	643		8	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	0	2	2 Oxidation (M)	3215.4724	0.4724082	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	1	2	0		1				15.535	15.535	5	1.0305E-07	7018	DP1063-7	97.085	75.094			NaN	NaN	NaN	0	0	Median	18320000	0	18320000	146	381	142	334	651;652	652	474;475	2	9606
AHSIQIMK	1	0	Unmodified	926.50077	0.50077184	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	14.245	14.245	2	0.0072924	6417	DP1063-10	113.5	77.314			NaN	NaN	NaN	0	0	Median	10145000	0	10145000	147	335	143	335	653	653		1	9606
AHSIQIMKVEEIAASK	2	0	Oxidation (M)	1769.9346	0.93456956	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	1	1	5	0					1	16.536	16.536	3	0.023734	9148	DP1063-10	89.484	64.7			NaN	NaN	NaN	0	0	Median	17467000	0	17467000	148	335	144	336	654	654	399	1	9606
AIADTGANVVVTGGK	1	0	Unmodified	1371.7358	0.73579339	232	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			16.64	16.64	2	0.0093466	8915	DP1063-8	94.402	40.909			NaN	NaN	NaN	0	0	Median	0	0	0	149	232	145	337	655	655		1	9606
AIAELGIYPAVDPLDSTSR	0	1	Unmodified	1987.0262	0.026221336	103	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			22.365	22.365	2	7.3705E-05	16198	DP1063-8	109.6	109.6			0.62716	0.64985	NaN	1	0	Median	11693000	7416300	4276500	150	103	146	338	656;657;658	657		3	9606
AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFK	1	0	Unmodified	3950.0618	0.061825566	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		23.355	23.355	3;4	6.8068E-14	17511	DP1063-7	84.285	84.285			0.62579	0.64047	4.8255	4	0	Median	963120000	577250000	385880000	151	130	147	339;340;341;342	659;660;661;662;663;664;665;666;667;668;669;670;671;672;673;674;675;676;677	670		19	9606
AIEEQMVAAK	1	0	Oxidation (M)	1104.5485	0.5485099	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				13.819	13.819	2	0.014087	4677	DP1063-7	112.41	13.782			NaN	NaN	NaN	0	0	Median	21395000	0	21395000	152	514	148	343	678;679	678	586	2	9606
AIEMFMNK	1	0	2 Oxidation (M)	1014.4514	0.45143839	374	Q13895	BYSL	Bystin	yes	yes	0	2	0	4	0				1		14.942	14.942	2	0.042379	6518	DP1063-9	90.986	32.005			NaN	NaN	NaN	0	0	Median	0	0	0	153	374	149	344	680	680		1	9606
AIEPPPLDAVIEAEHTLR	0	1	Unmodified	1970.0473	0.047291129	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				21.863	21.863	3	8.5827E-05	15567	DP1063-7	136.35	112.15			NaN	NaN	NaN	0	0	Median	15496000	0	15496000	154	345	150	345	681;682	681		2	9606
AIETTDIISR	0	1	Unmodified	1117.5979	0.59790293	477	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	4	0				1		17.314	17.314	2	0.00031342	9671	DP1063-9	111.06	111.06			1.7482	1.8287	NaN	1	0	Median	21926000	8593600	13332000	155	477	151	346	683;684	684		2	9606
AIGIGAYLVR	0	1	Unmodified	1031.6128	0.61276513	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.22	0.533	15	2	1			23.864	23.864	1;2	1.196E-11	11746	DP1063-6	170.73	126.03			0.97652	0.99481	10.867	7	0	Median	1181400000	582800000	598610000	156	355;38	152	347;348;349;350;351;352;353;354;355;356;357;358;359;360;361;362;363;364	685;686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716;717;718;719;720;721	686		35	9606
AIGPHDVLATLLNNLK	1	0	Unmodified	1687.9621	0.96210494	69	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				24.1	24.1	3	6.2983E-06	18449	DP1063-7	147.39	126.58			NaN	NaN	NaN	0	0	Median	4233900	0	4233900	157	69	153	365	722;723	722		2	9606
AIIIFVPVPQLK	1	0	Unmodified	1336.8482	0.84824438	263	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	23.372	23.372	2	0.00064594	17808	DP1063-10	96.711	96.711			1.832	1.0868	NaN	1	0	Median	6386200	2570100	3816100	158	263	154	366	724;725	724		2	9606
AILVDLEPGTMDSVR	0	1	Oxidation (M)	1630.8236	0.82362212	109;373;366	P07437;Q13509;Q9BVA1;Q13885	TUBB;TUBB3;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.5	0.5			1	1		19.941	19.941	2	0.0017888	13267	DP1063-9	92.866	49.096			3.51	3.6542	10.69	2	0	Median	381990000	87221000	294770000	159	109;366;373	155	367;368	726;727;728;729;730;731;732;733	732	114	8	9606
AILVDLEPGTMDSVR	0	1	Unmodified	1614.8287	0.8287075	109;373;366	P07437;Q13509;Q9BVA1;Q13885	TUBB;TUBB3;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	4	0				1		21.071	21.071	2	0.0014112	14758	DP1063-9	119.45	119.45			3.5964	3.762	NaN	1	0	Median	18299000	3741900	14557000	160	109;366;373	155	369	734;735;736;737;738	735		5	9606
AINIGQLVDVK	1	0	Unmodified	1168.6816	0.68157298	382	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					20.699	20.699	2	0.049535	12234	DP1063-6	78.556	36.68			NaN	NaN	NaN	0	0	Median	3722700	0	3722700	161	382	156	370	739	739		1	9606
AINQIAAALFTIHK	1	0	Unmodified	1509.8667	0.86674799	567	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				21.619	21.619	3	0.0011294	15282	DP1063-7	96.371	83.449			0.57728	0.59484	NaN	1	0	Median	20056000	11990000	8066100	162	567	157	371	740;741	740		2	9606
AIPQLQGYLR	0	1	Unmodified	1157.6557	0.65569258	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		19.755	19.755	2	0.00033292	12901	DP1063-9	96.253	46.835			10.144	10.611	NaN	1	0	Median	217960000	18767000	199190000	163	336	158	372	742;743;744;745	742		4	9606
AIQAAFFYLEPR	0	1	Unmodified	1424.7452	0.74523587	25	CON__Q3SZR3			yes	yes	0	0	0	3.64	0.895	1	1		12		24.191	24.191	2	6.2984E-07	16204	DP1063-9	188.99	140.9		+	NaN	NaN	NaN	0	0	Median	166700000	166700000	0	164	25	159	373;374;375;376;377;378;379;380;381;382;383;384;385;386	746;747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765	750		20	
AIQDAILEVLK	1	0	Unmodified	1211.7125	0.71253876	443	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.656	20.656	2	1.5057E-05	13989	DP1063-8	168.26	27.423			NaN	NaN	NaN	0	0	Median	257940000	257940000	0	165	443	160	387;388;389;390	766;767;768;769;770;771;772	770		7	9606
AISSYFVSTMSSSIK	1	0	Oxidation (M)	1622.7862	0.78617399	67	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	1	0	4	0				1		18.967	18.967	2	0.0075436	12000	DP1063-9	106.49	65.777			NaN	NaN	NaN	0	0	Median	7255200	0	7255200	166	67	161	391	773	773	56	1	9606
AISVHSTPEGCSSACK	1	0	Unmodified	1689.7451	0.74505423	546	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			13.765	13.765	3	0.022706	5109	DP1063-8	90.476	66.061			3.1381	3.1605	NaN	1	0	Median	10141000	2369400	7771800	167	546	162	392	774	774		0	9606
AITGASLADIMAK	1	0	Oxidation (M)	1276.6697	0.66968766	321	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	0	5	0					1	18.286	18.286	2	0.0054031	11399	DP1063-10	115.57	85.764			NaN	NaN	NaN	0	0	Median	121440000	0	121440000	168	321	163	393	775	775	386	1	9606
AITGASLADIMAK	1	0	Unmodified	1260.6748	0.67477304	321	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	20.481	20.481	2	0.00010069	14286	DP1063-10	150.1	107.24			NaN	NaN	NaN	0	0	Median	16512000	0	16512000	169	321	163	394	776;777	776		2	9606
AITIAGIPQSIIECVK	1	0	Unmodified	1711.9542	0.95424237	399	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		22.689	22.689	2	0.0031612	16813	DP1063-9	112.51	20.652			NaN	NaN	NaN	0	0	Median	3693400	0	3693400	170	399	164	395	778;779;780	779		3	9606
AIVAGDQNVEYK	1	0	Unmodified	1305.6565	0.65648044	369	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		15.992	15.992	2	0.00046404	7988	DP1063-9	119.75	105.66			0.875	0.89935	NaN	1	0	Median	21385000	11059000	10325000	171	369	165	396	781;782;783;784;785	785		5	9606
AIVAIENPADVSVISSR	0	1	Unmodified	1739.9418	0.94176342	116	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		20.336	20.336	2	8.4576E-12	13776	DP1063-9	175.48	175.48			1.9663	2.0569	NaN	1	0	Median	28181000	10006000	18175000	172	116	166	397	786;787	787		2	9606
AIVSSGTLGDR	0	1	Unmodified	1074.5669	0.56693715	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				15.941	15.941	2	0.0063915	7542	DP1063-7	126.31	41.745			NaN	NaN	NaN	0	0	Median	39612000	0	39612000	173	338	167	398	788;789	788		2	9606
AKEQEAEPEEQEEDSSSDPR	1	1	Unmodified	2288.9517	0.951672	244	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	1	3	0			2			13.509	13.509	2;3	1.4604E-07	4848	DP1063-8	141.74	118.1			NaN	NaN	NaN	0	0	Median	14182000	0	14182000	174	244	168	399;400	790;791;792	791		3	9606
ALAAAGYDVEK	1	0	Unmodified	1106.5608	0.56078914	142;125	P10412;P16402;Q02539;P22492;P16403	HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.2	no	no	0	0	0	4	0				2		16.241	16.241	2	0.00022634	8254	DP1063-9	107.21	69.478			7.7225	7.9374	NaN	1	0	Median	554670000	59054000	495620000	175	125;142	169	401;402	793;794;795;796;797	794		5	9606
ALAAAGYDVEKNNSR	1	1	Unmodified	1577.7798	0.77978347	142;125	P10412;P16402;Q02539;P22492;P16403	HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.2	no	no	0	0	1	4	0				2		15.064	15.064	2;3	2.7559E-17	6648	DP1063-9	190.37	130.76			8.0339	7.5977	NaN	1	0	Median	154880000	5653000	149230000	176	125;142	170	403;404	798;799;800;801;802;803	803		6	9606
ALAVSDLNR	0	1	Unmodified	957.52434	0.52434406	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.58	1	1		1	1	16.56	16.56	2	2.0135E-19	8362	DP1063-7	192.31	94.708			0.95965	1.0063	15.17	4	0	Linear	936300000	470840000	465470000	177	130	171	405;406;407;408	804;805;806;807;808;809;810	807		7	9606
ALEDLAGFK	1	0	Unmodified	962.5073	0.50729701	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				19.337	19.337	2	0.0097035	12202	DP1063-7	109.86	56.696			NaN	NaN	NaN	0	0	Median	22523000	0	22523000	178	211	172	409	811;812	811		2	9606
ALEESNYELEGK	1	0	Unmodified	1380.6409	0.64088996	16	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.75	1.48	1	1	1		1	16.768	16.768	2	6.8413E-07	9031	DP1063-8	188.04	120.14		+	NaN	NaN	NaN	0	0	Median	255750000	255750000	0	179	16	173	410;411;412;413	813;814;815;816;817;818;819;820	819		8	9606
ALELTGLK	1	0	Unmodified	843.50657	0.50656873	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				18.148	18.148	2	0.0020041	10560	DP1063-7	128.57	44.322			NaN	NaN	NaN	0	0	Median	217290000	0	217290000	180	155	174	414	821;822	821		2	9606
ALEQIDENLIYWPR	0	1	Unmodified	1758.8941	0.89408495	507	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		22.804	22.804	2	0.0034321	16941	DP1063-9	113.22	68.377			NaN	NaN	NaN	0	0	Median	2955200	0	2955200	181	507	175	415	823	823		1	9606
ALIAAQYSGAQVR	0	1	Unmodified	1346.7306	0.73064844	175	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		17.397	17.397	2	0.013821	9794	DP1063-9	104.05	47.79			NaN	NaN	NaN	0	0	Median	0	0	0	182	175	176	416	824	824		1	9606
ALIAGGGAPEIELALR	0	1	Unmodified	1549.8828	0.88279198	233	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			21.578	21.578	2	0.00081852	15235	DP1063-8	108.59	74.709			1.8308	1.897	NaN	1	0	Median	28378000	9813400	18565000	183	233	177	417	825;826;827	826		3	9606
ALIVVQQGMTPSAK	1	0	Oxidation (M)	1457.7912	0.79119978	156	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	1	0	5	0					1	16.881	16.881	2	0.028645	9604	DP1063-10	80.763	26.156			NaN	NaN	NaN	0	0	Median	0	0	0	184	156	178	418	828	828	184	1	9606
ALKAWSVAR	1	1	Unmodified	1000.5818	0.58179936	12	CON__P02769			yes	yes	0	0	1	3	0			1			15.718	15.718	2	0.035137	7645	DP1063-8	153.04	84.121		+	NaN	NaN	NaN	0	0	Median	101570000	101570000	0	185	12	179	419	829	829		1	
ALLAANEEEDR	0	1	Unmodified	1229.5888	0.58879481	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				15.908	15.908	2	0.008547	7528	DP1063-7	112.71	59.986			NaN	NaN	NaN	0	0	Median	31291000	0	31291000	186	418	180	420	830;831	830		2	9606
ALLAANEEEDREIR	0	2	Unmodified	1627.8166	0.81656291	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	3	1.22	1	2	2	2	1	16.224	16.224	2;3	3.8241E-17	8335	DP1063-9	217.02	166.98			NaN	NaN	NaN	0	0	Median	574950000	0	574950000	187	418	181	421;422;423;424;425;426;427;428	832;833;834;835;836;837;838;839;840;841;842;843;844	844		13	9606
ALLANALTSALR	0	1	Unmodified	1212.719	0.71902112	249	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	5	0					1	21.39	21.39	2	1.154E-06	15463	DP1063-10	161.27	161.27			2.0714	1.494	NaN	1	0	Median	20256000	6595300	13660000	188	249	182	429	845;846;847;848	847		4	9606
ALLFIPR	0	1	Unmodified	828.52216	0.52215921	113	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				20.393	20.393	2	0.00078136	13665	DP1063-7	130.84	11.603			1.3444	1.3833	NaN	1	0	Median	39651000	14475000	25176000	189	113	183	430	849;850	850		2	9606
ALLFVPR	0	1	Unmodified	814.50651	0.50650915	110	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				19.642	19.642	2	0.015459	12621	DP1063-7	85.306	0			0.87859	0.9068	NaN	1	0	Median	32444000	16943000	15500000	190	110	184	431	851;852	851		2	9606
ALLLLPVEQGFTFSGICR	0	1	Unmodified	2020.0816	0.081568145	423	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	2	0		1				24.743	24.743	2	2.3725E-15	19221	DP1063-7	172.09	109.2			NaN	NaN	NaN	0	0	Median	7075200	0	7075200	191	423	185	432	853;854	854		2	9606
ALLTTNQLPQPDVFPLFK	1	0	Unmodified	2041.1248	0.12481317	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	2	0		1				23.995	23.995	2	3.656E-06	18282	DP1063-7	147.33	84.236			NaN	NaN	NaN	0	0	Median	14786000	0	14786000	192	543	186	433	855;856	855		2	9606
ALLVQVVNK	1	0	Unmodified	982.61752	0.61751616	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				17.863	17.863	2	0.011782	10177	DP1063-7	105.39	65.288			NaN	NaN	NaN	0	0	Median	31784000	0	31784000	193	338	187	434	857;858	858		2	9606
ALMLQGVDLLADAVAVTMGPK	1	0	2 Oxidation (M)	2144.1221	0.12211233	126	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	2	0	3	0			2			24.725	24.725	2;3	1.5793E-06	19147	DP1063-8	121.79	121.79			0.8822	0.88852	3.0194	2	0	Median	26823000	14837000	11986000	194	126	188	435;436	859;860	859	140;141	2	9606
ALNVVQSVLQINLSNSTNR	0	1	Unmodified	2069.1229	0.12291569	435	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	2	0		1				22.995	22.995	2	1.2815E-34	17008	DP1063-7	228.17	184.54			NaN	NaN	NaN	0	0	Median	7704500	0	7704500	195	435	189	437	861;862	861		2	9606
ALPASETPK	1	0	Unmodified	912.49165	0.49164694	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			13.797	13.797	2	0.023701	5119	DP1063-8	70.525	18.738			20.071	20.214	NaN	1	0	Median	36377000	1818600	34559000	196	75	190	438	863;864	864		2	9606
ALSFLGFSAPTPIQALTLAPAIR	0	1	Unmodified	2354.3362	0.33620293	513	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				26.186	26.186	2	6.6138E-11	20950	DP1063-7	153.94	134.1			NaN	NaN	NaN	0	0	Median	4292900	0	4292900	197	513	191	439	865;866	865		2	9606
ALTSFLPAPTQLSQDQLEAEEK	1	0	Acetyl (Protein N-term)	2457.2275	0.22749992	367	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	0	3	0			2			25.229	25.229	2;3	7.2245E-19	19725	DP1063-8	172.55	143.79			NaN	NaN	NaN	0	0	Median	13247000	0	13247000	198	367	192	440;441	867;868;869	868		3	9606
ALTVAHELLCNKPEEEK	2	0	Unmodified	1979.9986	0.99862638	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				16.77	16.77	3	4.9694E-11	8655	DP1063-7	169.15	131.78			NaN	NaN	NaN	0	0	Median	41223000	0	41223000	199	338	193	442	870;871	870		2	9606
ALTVPELTQQMFDAK	1	0	Oxidation (M)	1706.8549	0.85492225	311;366	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		20.113	20.113	2	0.0041432	13217	DP1063-8	75.695	10.001			3.7319	3.797	3.9678	2	0	Median	206760000	53797000	152970000	200	311;366	194	443;444	872;873	872	370	2	9606
ALTVPELTQQMFDAK	1	0	Unmodified	1690.86	0.86000763	311;366	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		22.484	22.484	2	2.4434E-06	16389	DP1063-8	163.12	163.12			3.2624	3.2858	NaN	1	0	Median	44763000	8838700	35924000	201	311;366	194	445;446	874;875;876	874		3	9606
ALTVPELTQQMFDSK	1	0	Unmodified	1706.8549	0.85492225	373	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	3.5	0.5			1	1		20.113	20.113	2	0.0016088	13258	DP1063-8	117.98	12.326			3.7319	3.797	3.9678	2	0	Median	206760000	53797000	152970000	202	373	195	447;448	877;878;879	877		3	9606
ALTVPELTQQVFDAK	1	0	Unmodified	1658.8879	0.88793694	109	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.33	0.471			2	1		22.256	22.256	2;3	2.5699E-06	16291	DP1063-9	156.6	156.6			3.3765	3.4353	3.7232	2	0	Median	207390000	52880000	154510000	203	109	196	449;450;451	880;881;882;883	883		4	9606
ALVDGPCTQVR	0	1	Unmodified	1214.6078	0.60775611	231	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	4.5	0.5				1	1	16.258	16.258	2	5.4231E-06	8857	DP1063-10	150.08	100.66			8.9303	6.441	NaN	1	0	Median	151070000	10810000	140260000	204	231	197	452;453	884;885;886;887;888	886		5	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	0	1	Unmodified	3135.3979	0.39788908	343	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				8		26.692	26.692	3	5.098999999999999E-44	15737	DP1063-9	205.25	192.83			18.033	18.863	NaN	1	0	Median	155480000	7448100	148040000	205	343	198	454;455;456;457;458;459;460;461	889;890;891;892;893;894;895;896;897;898;899;900;901;902;903;904;905;906;907;908;909;910	889		22	9606
ALVNCQYSSATFSTGER	0	1	Unmodified	1889.8578	0.8577758	525	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	4	0				1		18.083	18.083	2	7.4646E-33	10740	DP1063-9	217.09	155.74			NaN	NaN	NaN	0	0	Median	15421000	0	15421000	206	525	199	462	911;912	912		2	9606
ALVNQLHER	0	1	Unmodified	1078.5883	0.5883413	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	14.605	14.605	2;3	8.3117E-15	6219	DP1063-8	171.73	141.57			1.1199	1.1604	1.8406	3	0	Plateau	568670000	281070000	287590000	207	524	200	463;464;465;466	913;914;915;916;917;918;919;920;921;922;923;924;925	917		13	9606
ALYDTFSAFGNILSCK	1	0	Unmodified	1805.8658	0.86582129	131	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	2.5	0.5		1	1			24.18	24.18	2	0.00034586	18569	DP1063-7	136.7	101.9			NaN	NaN	NaN	0	0	Median	15404000	0	15404000	208	131	201	467;468	926;927;928;929;930	927		5	9606
AMDTPKPAVSDEK	2	0	Oxidation (M)	1403.6602	0.66024519	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	1	0	1					12.961	12.961	3	0.033788	2458	DP1063-6	85.973	57.209			NaN	NaN	NaN	0	0	Median	3175000	0	3175000	209	211	202	469	931	931		1	9606
AMEVDIEERPK	1	1	Oxidation (M)	1331.6391	0.63911582	578	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	1	1	5	0					1	14.53	14.53	2	0.022374	6761	DP1063-10	116.05	82.673			NaN	NaN	NaN	0	0	Median	0	0	0	210	578	203	470	932	932	629	1	9606
AMFLQPDLDSLVDFSTNNQK	1	0	Oxidation (M)	2298.0838	0.083812569	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				23.372	23.372	2	9.3458E-44	17541	DP1063-7	226.23	171.57			NaN	NaN	NaN	0	0	Median	15747000	0	15747000	211	493	204	471	933;934;935;936	934	570	4	9606
AMGEQAVALAR	0	1	Oxidation (M)	1131.5706	0.57064232	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		15.276	15.276	2	3.1992E-06	6649	DP1063-7	150.36	106.59			1.0468	1.0647	1.2901	2	0	Median	459860000	215340000	244520000	212	94	205	472;473;474	937;938;939;940;941;942;943;944;945	938	82	9	9606
AMGEQAVALAR	0	1	Unmodified	1115.5757	0.5757277	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			16.743	16.743	2	0.0093091	8693	DP1063-7	110.41	60.966			NaN	NaN	NaN	0	0	Median	91911000	53588000	38322000	213	94	205	475;476;477	946;947;948;949;950;951	948		6	9606
AMGIMNSFVNDIFER	0	1	2 Oxidation (M)	1774.8018	0.80184082	61;106	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	2	0	4.84	0.712	1			1	30	29.863	29.863	2;3	3.1787E-58	16176	DP1063-10	250.26	225.19			3.5143	2.5347	46.229	3	0	Plateau	755050000	174230000	580820000	214	61;106	206	478;479;480;481;482;483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508;509	952;953;954;955;956;957;958;959;960;961;962;963;964;965;966;967;968;969;970;971;972;973;974;975;976;977;978;979;980;981;982;983;984;985;986;987;988;989;990;991;992;993;994;995;996;997;998;999;1000	954	53;54	49	9606
AMGIMNSFVNDIFER	0	1	Oxidation (M)	1758.8069	0.8069262	61;106	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	1	0	5	0					2	23.303	23.303	2	6.7867E-72	18338	DP1063-10	267.85	267.85			3.4554	2.4922	11.326	2	0	Median	55794000	12557000	43237000	215	61;106	206	510;511	1001;1002;1003;1004;1005;1006;1007;1008;1009	1006	53;54	9	9606
AMHTPKPAVGEEKDINTFLGTPVQK	3	0	Oxidation (M)	2723.3953	0.39525072	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	1	0	1					17.252	17.252	4	0.00062098	7709	DP1063-6	83.064	61.57			NaN	NaN	NaN	0	0	Median	18055000	0	18055000	216	211	207	512	1010;1011	1011	236	2	9606
AMHTPKPSVGEEKDIIIFVGTPVQK	3	0	Oxidation (M)	2736.452	0.45203732	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	2	0		2				18.285	18.285	3;4	0.00062098	10731	DP1063-7	83.064	58.82			NaN	NaN	NaN	0	0	Median	46303000	0	46303000	217	211	208	513;514	1012;1013	1012	237	2	9606
AMLSGPGQFAENETNEVNFR	0	1	Oxidation (M)	2226.0011	0.0011455721	400	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	1	0	5	0					1	19.628	19.628	2	1.192E-51	13141	DP1063-10	242.79	206.27			NaN	NaN	NaN	0	0	Median	12798000	0	12798000	218	400	209	515	1014;1015;1016;1017	1014	493	4	9606
AMLTPKPAGGDEKDIK	3	0	Oxidation (M)	1685.8658	0.86582129	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	1.67	0.471	1	2				13.637	13.637	3;4	0.016925	4549	DP1063-7	104.95	64.23			NaN	NaN	NaN	0	0	Median	36657000	0	36657000	219	211	210	516;517;518	1018;1019;1020	1020	238	3	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Oxidation (M)	2533.118	0.11796624	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.75	0.829		2	1	1		19.799	19.799	2;3	7.142700000000001E-165	12864	DP1063-7	323.91	315.57			0.9923	1.0115	15.686	4	0	Median	613310000	302950000	310350000	220	483	211	519;520;521;522	1021;1022;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033;1034;1035;1036	1027	550	16	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Unmodified	2517.1231	0.12305162	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		2				20.62	20.62	2;3	1.7188000000000002E-122	13966	DP1063-7	288.42	270.46			0.99836	1.0277	1.486	2	0	Median	84831000	42677000	42154000	221	483	211	523;524	1037;1038;1039;1040;1041;1042;1043;1044	1043		8	9606
ANCIDSTASAEAVFASEVK	1	0	Unmodified	1968.9099	0.90987095	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		20.629	20.629	2	7.1966E-07	14173	DP1063-9	151.07	112.77			NaN	NaN	NaN	0	0	Median	9492500	0	9492500	222	160	212	525	1045	1045		1	9606
ANGTTVHVGIHPSK	1	0	Unmodified	1416.7474	0.74736113	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	0	5	0					1	13.399	13.399	3	0.0055111	5393	DP1063-10	94.023	72.723			NaN	NaN	NaN	0	0	Median	7450200	0	7450200	223	255	213	526	1046	1046		1	9606
ANHFFTVTDPR	0	1	Unmodified	1303.6309	0.63093439	523	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		17.144	17.144	3	0.05394	9430	DP1063-9	47.844	25.994			1.407	1.4718	NaN	1	0	Median	9620900	4273200	5347600	224	523	214	527	1047	1047		1	9606
ANLEESFPR	0	1	Acetyl (Protein N-term)	1103.5247	0.52473799	382	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	1	0	0	1	0	1					20.652	20.652	2	0.0091904	12181	DP1063-6	94.309	27.14			NaN	NaN	NaN	0	0	Median	4332100	0	4332100	225	382	215	528	1048;1049	1049		2	9606
ANSNLVLQADR	0	1	Unmodified	1199.6258	0.62584901	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.338	16.338	2	0.010842	6619	DP1063-6	130.94	59.489			NaN	NaN	NaN	0	0	Median	0	0	0	226	71	216	529	1050	1050		1	9606
APAMFNIR	0	1	Oxidation (M)	934.46947	0.46947171	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		16.584	16.584	2	0.0012743	8715	DP1063-9	122.15	92.816			7.4205	7.7621	NaN	1	0	Median	137220000	18763000	118460000	227	254	217	530	1051;1052;1053;1054	1054	311	4	9606
APAMFNIR	0	1	Unmodified	918.47456	0.47455709	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.474	18.474	2	0.020652	11305	DP1063-9	75.311	57.749			4.3053	4.5035	NaN	1	0	Median	24478000	3989800	20488000	228	254	217	531	1055;1056	1055		2	9606
APAMQPAEIQFAQR	0	1	Oxidation (M)	1572.7719	0.77186132	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.25	1.3		2		1	1	17.259	17.259	2;3	3.3473E-11	9328	DP1063-7	187.97	147.38			NaN	NaN	NaN	0	0	Median	169190000	0	169190000	229	381	218	532;533;534;535	1057;1058;1059;1060;1061;1062;1063	1059	476	7	9606
APFDLFENR	0	1	Unmodified	1107.5349	0.53490874	110	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				21.129	21.129	2	0.00097687	14650	DP1063-7	103.56	72.26			0.62467	0.64697	NaN	1	0	Median	8640900	5155300	3485600	230	110	219	536	1064	1064		1	9606
APGAEEDDSELQR	0	1	Unmodified	1415.6165	0.61646612	416	Q53F19	C17orf85	Uncharacterized protein C17orf85	yes	yes	0	0	0	2	0		1				14.839	14.839	2	6.4496E-10	6216	DP1063-7	176.95	151.01			NaN	NaN	NaN	0	0	Median	8627300	0	8627300	231	416	220	537	1065;1066	1066		2	9606
APGEQTVPALNLQNAFR	0	1	Unmodified	1824.9482	0.94824579	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1.67	0.471	1	2				21.125	21.125	2	1.7521999999999999E-28	12719	DP1063-6	212.9	155.1			NaN	NaN	NaN	0	0	Median	21024000	0	21024000	232	585	221	538;539;540	1067;1068;1069;1070	1067		4	9606
APGTPHSHTKPYVR	1	1	Unmodified	1546.8005	0.80045934	342	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					1	12.587	12.587	3	0.00012584	4615	DP1063-10	148.78	148.78			11.107	10.961	NaN	1	0	Median	26793000	2653600	24139000	233	342	222	541	1071;1072	1071		2	9606
APILIATDVASR	0	1	Unmodified	1225.703	0.7030367	148;469	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3.5	0.5			1	1		18.772	18.772	2	2.4102E-07	11608	DP1063-8	167.12	134.12			11.565	11.983	NaN	1	0	Median	171160000	11691000	159470000	234	469;148	223	542;543	1073;1074;1075;1076	1074		4	9606
APIRPDIVNFVHTNLR	0	2	Unmodified	1861.0323	0.032250187	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3.83	0.687			2	3	1	19.293	19.293	2;3;4	7.5791E-05	12388	DP1063-9	151.16	118.55			8.5599	8.6851	13.461	3	0	Median	518040000	46593000	471450000	235	193	224	544;545;546;547;548;549	1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088;1089	1088		13	9606
APIRPDIVNFVHTNLRK	1	2	Unmodified	1989.1272	0.1272132	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	2	4	0				1		18.201	18.201	4	0.044392	10889	DP1063-9	41.323	41.323			10.025	11.688	NaN	1	0	Median	30437000	3115000	27322000	236	193	225	550	1090	1090		1	9606
APQVLVLAPTR	0	1	Unmodified	1163.7026	0.70264277	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				18.641	18.641	2	0.00053288	11212	DP1063-7	148.32	100.47			NaN	NaN	NaN	0	0	Median	70956000	0	70956000	237	531	226	551	1091;1092	1092		2	9606
APSLTNDEVEEFR	0	1	Unmodified	1505.6998	0.69980182	360	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				18.669	18.669	2	2.1997E-11	11316	DP1063-7	196.88	154.67			NaN	NaN	NaN	0	0	Median	24524000	0	24524000	238	360	227	552	1093;1094	1094		2	9606
APSSLSDAVPQR	0	1	Unmodified	1226.6255	0.62551466	447	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	2	0		1				16.111	16.111	2	0.044868	7795	DP1063-7	79.07	43.775			NaN	NaN	NaN	0	0	Median	15253000	0	15253000	239	447	228	553	1095;1096	1095		2	9606
APSTYGGGLSVSSSR	0	1	Unmodified	1424.6896	0.68957148	9	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	2.5	1.5	1			1		16.25	16.25	2	1.2356E-08	8250	DP1063-9	164.9	101.83		+	NaN	NaN	NaN	0	0	Median	20542000	20542000	0	240	9	229	554;555	1097;1098;1099;1100	1099		4	9606
APSYLEISSMR	0	1	Oxidation (M)	1268.6071	0.60708741	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	0	2	0		1				17.802	17.802	2	0.0049017	10097	DP1063-7	75.387	32.304			1.2347	1.2751	NaN	1	0	Median	31187000	14916000	16272000	241	316	230	556	1101;1102;1103;1104	1103	377	4	9606
APTSTEANHIR	0	1	Unmodified	1195.5945	0.59454889	314	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	2	0		1				12.701	12.701	3	0.0020178	3315	DP1063-7	131.09	107			NaN	NaN	NaN	0	0	Median	4385100	0	4385100	242	314	231	557	1105;1106	1105		2	9606
AQALEDLAGFK	1	0	Unmodified	1161.603	0.60298831	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1.5	0.5	1	1				19.695	19.695	2	0.003476	10877	DP1063-6	134.25	65.401			NaN	NaN	NaN	0	0	Median	81521000	0	81521000	243	211	232	558;559	1107;1108;1109;1110	1107		4	9606
AQALEDLAGFKELFQTPGHTEELVAAGK	2	0	Unmodified	2969.5135	0.5134516	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					22.186	22.186	4	0.047787	14106	DP1063-6	36.316	10.831			NaN	NaN	NaN	0	0	Median	6538800	0	6538800	244	211	233	560	1111	1111		1	9606
AQALEELTGFR	0	1	Unmodified	1233.6354	0.63535107	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		20.155	20.155	2	3.3401E-06	13339	DP1063-7	185.6	141.25			NaN	NaN	NaN	0	0	Median	64855000	0	64855000	245	211	234	561;562;563	1112;1113;1114;1115;1116	1114		5	9606
AQAVHPGYGFLSENK	1	0	Unmodified	1616.7947	0.79470526	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			17.121	17.121	2;3	5.6001E-11	9189	DP1063-7	200.93	188.87			0.90273	0.9302	2.0568	2	0	Median	219750000	94751000	125000000	246	94	235	564;565;566	1117;1118;1119;1120;1121;1122;1123;1124;1125	1120		9	9606
AQAVHPGYGFLSENKEFAR	1	1	Unmodified	2120.0439	0.043937085	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	1.07		3	2	1	1	17.684	17.684	2;3;4	3.9193E-18	9961	DP1063-7	189.33	169.73			0.97128	1.006	7.3174	7	0	Median	847080000	423080000	423990000	247	94	236	567;568;569;570;571;572;573	1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144	1137		19	9606
AQAVSEDAGGNEGR	0	1	Unmodified	1359.6015	0.60148476	247	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		1				13.073	13.073	2	0.00066211	3784	DP1063-7	141.71	129.66			2.0828	2.1576	NaN	1	0	Median	9341300	3393100	5948200	248	247	237	574	1145;1146	1146		2	9606
AQCPIVER	0	1	Unmodified	971.48585	0.48585006	218	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	14.37	14.37	2	0.0027973	6456	DP1063-10	116.25	88.076			5.1882	3.742	NaN	1	0	Median	32020000	5392700	26627000	249	218	238	575	1147;1148	1147		2	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term);Oxidation (M)	1459.6362	0.6361557	297	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	1	5	0					1	12.984	12.984	2	0.00073452	4898	DP1063-10	92.611	92.611			4.999	4.9335	NaN	1	0	Median	69726000	11371000	58355000	250	297	239	576	1149;1150;1151;1152	1149	355	4	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term)	1443.6412	0.64124108	297	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	5	0					2	14.614	14.614	2	0.0039897	6765	DP1063-10	126.67	79.068			NaN	NaN	NaN	0	0	Median	9323900	0	9323900	251	297	239	577;578	1153;1154;1155;1156	1153		4	9606
AQDSSLHMPER	0	1	Oxidation (M)	1285.5721	0.57209888	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				12.888	12.888	2	0.0056017	3489	DP1063-7	133.42	107.61			NaN	NaN	NaN	0	0	Median	4885600	0	4885600	252	493	240	579	1157	1157	571	1	9606
AQEGPDAEIIGGER	0	1	Unmodified	1440.6845	0.68448611	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					17.047	17.047	2	0.0041904	7459	DP1063-6	110.08	37.425			NaN	NaN	NaN	0	0	Median	9984400	0	9984400	253	57	241	580	1158;1159	1158		2	9606
AQEIAMQNR	0	1	Unmodified	1059.5131	0.51312744	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		14.227	14.227	2	6.5875E-15	5711	DP1063-8	174.16	139.34			1.0381	1.0808	7.5377	2	0	Median	280950000	136250000	144700000	254	524	242	581;582	1160;1161;1162;1163;1164;1165;1166;1167	1162		8	9606
AQEPESGLSEETQVK	1	0	Unmodified	1630.7686	0.76860967	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.937	15.937	2	2.8529E-05	6004	DP1063-6	146.5	113.13			NaN	NaN	NaN	0	0	Median	3763300	0	3763300	255	318	243	583	1168;1169	1168		2	9606
AQFEGIVTDLIR	0	1	Unmodified	1360.7351	0.73506511	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			22.347	22.347	2	8.8683E-05	16220	DP1063-7	137.98	80.929			1.8028	1.8589	7.2632	2	0	Median	72980000	22949000	50031000	256	198	244	584;585	1170;1171;1172;1173	1171		4	9606
AQHQQALSSLELLNVLFR	0	1	Unmodified	2066.1273	0.12727278	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		2				23.95	23.95	2;3	7.2591E-60	18242	DP1063-7	259.27	218.69			NaN	NaN	NaN	0	0	Median	28631000	0	28631000	257	493	245	586;587	1174;1175;1176;1177;1178	1175		5	9606
AQIFANTVDNAR	0	1	Unmodified	1318.663	0.6629628	100	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		17.118	17.118	2	2.4039E-05	9401	DP1063-9	150.08	119			1.2011	1.2564	NaN	1	0	Median	32601000	14048000	18553000	258	100	246	588	1179;1180;1181;1182	1179		4	9606
AQIHDLVLVGGSTR	0	1	Unmodified	1464.8049	0.80487601	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0.816		1	1	1		17.604	17.604	2	4.8126E-06	10000	DP1063-8	158.34	158.34			3.6153	3.7639	8.8914	2	0	Median	429460000	102020000	327440000	259	124	247	589;590;591	1183;1184;1185;1186;1187;1188;1189	1185		7	9606
AQLGLGHSYSR	0	1	Unmodified	1187.6047	0.60471964	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			14.902	14.902	2	0.010933	6684	DP1063-8	107.83	66.383			NaN	NaN	NaN	0	0	Median	12631000	0	12631000	260	35	248	592	1190	1190		1	9606
AQLGVQAFADALLIIPK	1	0	Unmodified	1767.0295	0.02945622	202	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			25.526	25.526	2	0.0014651	20079	DP1063-8	92.151	92.151			1.9705	1.9846	NaN	1	0	Median	8773200	2671300	6101900	261	202	249	593	1191;1192	1191		2	9606
AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR	1	1	Oxidation (M)	3282.6047	0.60466793	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	1	4	0				1		21.983	21.983	3	5.5024999999999996E-21	15807	DP1063-9	167.72	137.98			NaN	NaN	NaN	0	0	Median	32059000	0	32059000	262	298	250	594	1193;1194;1195;1196	1193	356	4	9606
AQPLEDLAGLKELFQTPVCTDKPTTHEK	3	0	Unmodified	3165.6016	0.60161468	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				21.196	21.196	5	0.02511	14711	DP1063-7	45.511	24.46			NaN	NaN	NaN	0	0	Median	12698000	0	12698000	263	211	251	595	1197;1198	1197		2	9606
AQSLVISPPAPSPR	0	1	Unmodified	1418.7882	0.78816332	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		17.957	17.957	2	0.0018674	10231	DP1063-7	124.39	81.103			NaN	NaN	NaN	0	0	Median	41980000	0	41980000	264	211	252	596;597;598	1199;1200;1201;1202;1203	1201		5	9606
AQVAMSTLPVEDEESSESR	0	1	Acetyl (Protein N-term);Oxidation (M)	2121.9372	0.93720791	316	P78347	GTF2I	General transcription factor II-I	yes	yes	1	1	0	2	0		1				19.555	19.555	2	2.4258E-05	12570	DP1063-7	136.83	100.54			0.80054	0.83085	NaN	1	0	Median	19260000	9676300	9583500	265	316	253	599	1204;1205	1204	378	2	9606
AQVIYTR	0	1	Unmodified	849.47085	0.47085192	290	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	14.59	14.59	2	0.00049179	6805	DP1063-10	134.06	67.257			7.5152	5.4204	NaN	1	0	Median	101390000	14065000	87327000	266	290	254	600	1206;1207;1208;1209;1210;1211	1207		6	9606
AQVSLLIR	0	1	Unmodified	898.56	0.56000128	485	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		18.408	18.408	2	0.03019	11198	DP1063-9	68.787	34.614			1.0186	1.0655	NaN	1	0	Median	25128000	12509000	12618000	267	485	255	601	1212	1212		1	9606
AQYDELAR	0	1	Unmodified	964.46141	0.46140945	100	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		15.669	15.669	2	0.046969	7476	DP1063-9	63.565	7.889			1.4369	1.5031	NaN	1	0	Median	24253000	9224400	15029000	268	100	256	602	1213;1214	1213		2	9606
AQYEDIAQK	1	0	Unmodified	1064.5138	0.51383895	88	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	2	0.816	1	1	1			14.902	14.902	2	0.0036109	4855	DP1063-6	153.04	96.315		+	NaN	NaN	NaN	0	0	Median	247930000	247930000	0	269	88	257	603;604;605	1215;1216;1217;1218;1219;1220	1215		6	9606
AQYEDIAR	0	1	Unmodified	964.46141	0.46140945	14	CON__P07744			yes	yes	0	0	0	4	0				1		15.669	15.669	2	0.0025729	7506	DP1063-9	101.64	0		+	1.4369	1.5031	NaN	1	0	Median	24253000	9224400	15029000	270	14	258	606	1221;1222	1221		2	
AQYEEIAQR	0	1	Unmodified	1106.5356	0.53563702	20	P35908;CON__P35908v2;CON__P35908;Q01546;CON__P19013;P19013	KRT2;KRT76;KRT4	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 4	no	no	0	0	0	2.33	0.943	1		2			15.28	15.28	2	0.00036662	7005	DP1063-8	161.68	96.435		+	NaN	NaN	NaN	0	0	Median	40708000	40708000	0	271	20	259	607;608;609	1223;1224;1225;1226	1225		4	9606
ARFEELCSDLFR	0	2	Unmodified	1541.7297	0.72966216	124;145	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3	0			2			20.012	20.012	2;3	0.0001145	13180	DP1063-8	122.52	122.52			5.5004	5.5927	22.991	2	0	Median	294660000	47219000	247440000	272	145;124	260	610;611	1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237	1235		11	9606
ARFEELNADLFR	0	2	Unmodified	1479.747	0.74702678	128	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	2.5	0.5		2	2			19.73	19.73	2;3	1.6825E-05	12759	DP1063-7	153.54	153.54			4.1061	4.175	25.59	3	0	Median	221450000	28874000	192570000	273	128	261	612;613;614;615	1238;1239;1240;1241;1242;1243;1244	1238		6	9606
ASAALLDKLYALGLVPTR	1	1	Unmodified	1871.088	0.088033731	535	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	0	1	5	0					1	22.753	22.753	3	0.015521	17114	DP1063-10	78.552	54.014			NaN	NaN	NaN	0	0	Median	2027900	0	2027900	274	535	262	616	1245	1245		1	9606
ASALEQFVNSVR	0	1	Acetyl (Protein N-term)	1361.6939	0.69392858	561	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	1	0	0	4	0				1		25.902	25.902	2	0.0016541	20595	DP1063-9	126.71	65.734			NaN	NaN	NaN	0	0	Median	1853400	0	1853400	275	561	263	617	1246	1246		1	9606
ASAQDAGDHVQPPEGR	0	1	Unmodified	1633.7445	0.7444606	471	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4	0				1		13.84	13.84	3	0.002333	5033	DP1063-9	105.14	85.244			NaN	NaN	NaN	0	0	Median	10526000	0	10526000	276	471	264	618	1247;1248	1247		2	9606
ASAVSPANLPAVLLQPR	0	1	Acetyl (Protein N-term)	1744.9836	0.98356866	234	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	2	0		1				24.57	24.57	2	7.5626E-10	19003	DP1063-7	156.01	105.53			NaN	NaN	NaN	0	0	Median	6244000	0	6244000	277	234	265	619	1249;1250	1249		2	9606
ASEAQPPVAR	0	1	Unmodified	1024.5302	0.53015772	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				13.428	13.428	2	0.0014763	4232	DP1063-7	141.39	88.037			NaN	NaN	NaN	0	0	Median	16301000	0	16301000	278	365	266	620	1251;1252	1251		2	9606
ASEMAGPPQMPNDFLSFQDIATEAAHPIR	0	1	2 Oxidation (M)	3172.4594	0.4593839	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	2	0	1	0	1					22.002	22.002	3	0.0078583	13811	DP1063-6	61.499	36.286			NaN	NaN	NaN	0	0	Median	7354100	0	7354100	279	431	267	621	1253;1254	1253	527;528	2	9606
ASESSKPWPDATYGTGSASR	1	1	Unmodified	2053.9341	0.93411186	570	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				16.328	16.328	2	0.01026	8125	DP1063-7	94.532	57.578			NaN	NaN	NaN	0	0	Median	0	0	0	280	570	268	622	1255	1255		1	9606
ASEVFLQR	0	1	Unmodified	948.50288	0.50288033	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				16.801	16.801	2	0.012277	8737	DP1063-7	108.09	53.883			NaN	NaN	NaN	0	0	Median	30662000	0	30662000	281	514	269	623	1256;1257	1257		2	9606
ASGAGSEFQDQTR	0	1	Unmodified	1352.5957	0.5956711	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.83	1.34	1	2	1	1	1	14.589	14.589	2	1.5659E-53	6185	DP1063-8	279.77	239.05			65.474	64.221	NaN	1	0	Median	1132100000	12863000	1119300000	282	418	270	624;625;626;627;628;629	1258;1259;1260;1261;1262;1263;1264;1265;1266;1267;1268;1269	1266		12	9606
ASGGLPQFGDEYDFYR	0	1	Unmodified	1820.8006	0.8005785	333	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				21.475	21.475	2	0.0010478	15059	DP1063-7	127.71	94.523			NaN	NaN	NaN	0	0	Median	18325000	0	18325000	283	333	271	630	1270;1271	1270		2	9606
ASGGSLQGHDAVLR	0	1	Unmodified	1366.6953	0.69532556	456	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		14.634	14.634	2	4.7951E-05	6121	DP1063-9	149.41	104.55			NaN	NaN	NaN	0	0	Median	7148900	0	7148900	284	456	272	631	1272;1273	1273		2	9606
ASGNYATVISHNPETK	1	0	Unmodified	1687.8166	0.81656291	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4.5	0.5				2	2	15.52	15.52	2;3	6.572299999999999E-40	7248	DP1063-9	246.63	197.65			12.817	13.174	NaN	1	0	Median	209540000	16128000	193410000	285	298	273	632;633;634;635	1274;1275;1276;1277;1278;1279;1280;1281;1282	1282		9	9606
ASGNYATVISHNPETKK	2	0	Unmodified	1815.9115	0.91152593	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				2		14.559	14.559	3;4	0.00010769	5971	DP1063-9	114.63	114.63			11.028	11.666	18.178	2	0	Median	67281000	6357300	60923000	286	298	274	636;637	1283;1284;1285	1284		3	9606
ASGPPVSELITK	1	0	Unmodified	1197.6605	0.66050319	142;125	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	0	4	0				1		18.044	18.044	2	0.0028043	10425	DP1063-9	82.171	47.639			6.8386	7.0289	NaN	1	0	Median	329540000	39290000	290250000	287	125;142	275	638	1286;1287	1287		2	9606
ASGVAVSDGVIK	1	0	Acetyl (Protein N-term)	1143.6136	0.61355299	165	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	5	0					1	19.086	19.086	2	0.020657	12543	DP1063-10	118.4	83.601			1.0684	0.63383	NaN	1	0	Median	14430000	6555100	7875000	288	165	276	639	1288;1289	1288		2	9606
ASINMLR	0	1	Oxidation (M)	819.42727	0.42727255	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	0	4	0				1		14.686	14.686	2	0.03487	6165	DP1063-9	62.714	11.748			12.03	12.584	NaN	1	0	Median	69407000	6312100	63095000	289	152	277	640	1290;1291	1291		2	9606
ASIQAASAESSGQK	1	0	Unmodified	1333.6474	0.64737232	421	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2	0		1				13.577	13.577	2	4.0711E-08	4411	DP1063-7	167.12	131.21			NaN	NaN	NaN	0	0	Median	7508200	0	7508200	290	421	278	641	1292;1293	1292		2	9606
ASITPGTILIILTGR	0	1	Unmodified	1524.9239	0.92392852	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		25.431	25.431	2	0.00069809	20008	DP1063-9	140.63	140.63			10.528	11.013	NaN	1	0	Median	94576000	7534600	87042000	291	336	279	642	1294;1295;1296;1297	1296		4	9606
ASMQQQQQLASAR	0	1	Oxidation (M)	1461.6994	0.69942466	581	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		13.483	13.483	2	2.0631E-15	4570	DP1063-9	185.99	185.99			1.6394	1.7149	NaN	1	0	Median	29374000	10331000	19043000	292	581	280	643	1298;1299;1300;1301;1302	1300	632	5	9606
ASMQQQQQLASAR	0	1	Unmodified	1445.7045	0.70451004	581	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	4	0				1		14.603	14.603	2	0.00069389	6078	DP1063-9	137.89	106.02			NaN	NaN	NaN	0	0	Median	5536000	0	5536000	293	581	280	644	1303;1304	1303		2	9606
ASNGDAWVEAHGK	1	0	Unmodified	1340.6109	0.61092723	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				14.642	14.642	3	0.017545	5805	DP1063-7	79.633	60.575			NaN	NaN	NaN	0	0	Median	14291000	0	14291000	294	198	281	645	1305;1306	1305		2	9606
ASPSLERPEK	1	1	Acetyl (Protein N-term)	1154.5932	0.5931519	368	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	1	0	1	4	0				1		15.103	15.103	2	0.01032	6723	DP1063-9	112.11	64.45			NaN	NaN	NaN	0	0	Median	25148000	0	25148000	295	368	282	646	1307;1308	1307		2	9606
ASPSPTDPVVPAVPIGPPPAGFR	0	1	Unmodified	2225.1845	0.18445331	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.12	0.331		7	1			22.066	22.066	2;3	4.1722E-36	14619	DP1063-7	198.48	173.15			0.41918	0.42019	0.75613	2	0	Median	514350000	368110000	146230000	296	130	283	647;648;649;650;651;652;653;654	1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324	1311		16	9606
ASQGSTLVHPFR	0	1	Unmodified	1298.6731	0.67313356	314	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	2	0		1				16.052	16.052	3	0.038595	7773	DP1063-7	69.451	41.589			NaN	NaN	NaN	0	0	Median	21815000	0	21815000	297	314	284	655	1325;1326	1326		2	9606
ASQPDLVDTPTSSKPQPK	2	0	Unmodified	1894.9636	0.96362108	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.707	1	2	1			14.951	14.951	2;3	0.0014775	6209	DP1063-7	107.03	73.478			NaN	NaN	NaN	0	0	Median	68772000	0	68772000	298	211	285	656;657;658;659	1327;1328;1329;1330;1331;1332;1333;1334;1335	1331		9	9606
ASSEGTIPQVQR	0	1	Unmodified	1271.647	0.64697839	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				15.445	15.445	2	0.0096668	6874	DP1063-7	105.2	58.738			NaN	NaN	NaN	0	0	Median	7467200	0	7467200	299	504	286	660	1336	1336		1	9606
ASVSELACIYSALILHDDEVTVTEDKINALIK	2	0	Acetyl (Protein N-term)	3571.8331	0.83313076	96	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	1	0	1	5	0					2	26.831	26.831	3	1.1526E-14	21540	DP1063-10	120.6	104.66			NaN	NaN	NaN	0	0	Median	2625100	0	2625100	300	96	287	661;662	1337;1338;1339;1340	1338		4	9606
ATAAETSASEPEAESK	1	0	Acetyl (Protein N-term)	1619.7162	0.71623974	389	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	1	0	0	2	0		1				15.949	15.949	2	1.7672E-17	7609	DP1063-7	187.78	144.27			NaN	NaN	NaN	0	0	Median	8154500	0	8154500	301	389	288	663	1341;1342	1341		2	9606
ATAGDTHLGGEDFDNR	0	1	Unmodified	1674.7234	0.72339081	124;145	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0.816		2	2	2		15.662	15.662	2;3	5.984400000000001E-122	7595	DP1063-8	306.64	295.71			4.5782	4.7379	3.3253	3	0	Plateau	1134300000	193620000	940650000	302	145;124	289	664;665;666;667;668;669	1343;1344;1345;1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358	1354		16	9606
ATAPQTQHVSPMR	0	1	Oxidation (M)	1438.6987	0.69869638	180	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	1	0	4	0				1		12.722	12.722	3	0.0016407	3740	DP1063-9	70.563	70.563			0.84334	0.88217	NaN	1	0	Median	8765400	4399500	4365900	303	180	290	670	1359;1360	1359	205	2	9606
ATAPVPTVGEGYGYGHESELSQASAAAR	0	1	Unmodified	2775.31	0.31000077	506	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	4	0				1		18.058	18.058	3	0.0017947	10705	DP1063-9	87.792	68.096			NaN	NaN	NaN	0	0	Median	0	0	0	304	506	291	671	1361	1361		1	9606
ATAVMPDGQFK	1	0	Oxidation (M)	1179.5594	0.55940893	341	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	1	0	5	0					1	15.312	15.312	2	0.0017304	7692	DP1063-10	82.749	62.988			1.7829	1.0577	NaN	1	0	Median	16763000	6617300	10146000	305	341	292	672	1362;1363;1364;1365	1363	406	4	9606
ATCGTVGDDNEEAKR	1	1	Unmodified	1621.7002	0.70021252	197	P38432	COIL	Coilin	yes	yes	0	0	1	2.5	0.5		1	1			12.657	12.657	3	9.3969E-05	3824	DP1063-8	138.31	112.32			NaN	NaN	NaN	0	0	Median	8241000	0	8241000	306	197	293	673;674	1366;1367	1367		2	9606
ATDLGGTSQAGTSQR	0	1	Unmodified	1448.6855	0.68554874	438	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	2	0		1				13.708	13.708	2	0.0003908	4607	DP1063-7	136.7	93.401			NaN	NaN	NaN	0	0	Median	2876700	0	2876700	307	438	294	675	1368;1369	1369		2	9606
ATEEKKPETEAAR	2	1	Acetyl (Protein N-term)	1500.742	0.74200098	261	P61964	WDR5	WD repeat-containing protein 5	yes	yes	1	0	2	4	0				1		12.734	12.734	3	0.00019844	3738	DP1063-9	113.24	113.24			7.9123	8.2784	NaN	1	0	Median	12039000	2403400	9636000	308	261	295	676	1370;1371	1370		2	9606
ATEEQLKTVMENFVAFVDK	2	0	Unmodified	2198.0929	0.092920692	12	CON__P02769			yes	yes	0	0	1	3	0			1			24.746	24.746	3	6.9645E-07	19170	DP1063-8	143.52	131.08		+	NaN	NaN	NaN	0	0	Median	6902000	6902000	0	309	12	296	677	1372;1373	1372		2	
ATENDIYNFFSPLNPVR	0	1	Unmodified	1995.969	0.96904081	184;239	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	3.8	0.748			2	2	1	23.955	23.955	2;3	4.4652E-48	18265	DP1063-9	291.5	291.5			1.9634	2.038	24.946	4	0	Linear	155470000	50753000	104710000	310	184;239	297	678;679;680;681;682	1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388	1381		15	9606
ATFDAISK	1	0	Unmodified	851.43888	0.43888309	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		15.995	15.995	2	0.0023941	7952	DP1063-9	119.29	81.645			4.5258	4.6518	NaN	1	0	Median	107570000	18800000	88765000	311	141	298	683	1389;1390	1390		2	9606
ATFSGPAGPILSLNPQEDVEFQK	1	0	Acetyl (Protein N-term)	2486.2329	0.23291965	508	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	1	0	0	4	0				1		24.844	24.844	2	0.011469	19402	DP1063-9	77.324	43.537			NaN	NaN	NaN	0	0	Median	0	0	0	312	508	299	684	1391	1391		1	9606
ATGADVR	0	1	Acetyl (Protein N-term)	730.36097	0.36096712	526	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	1	0	0	5	0					1	15.623	15.623	1	0.0071284	8161	DP1063-10	69.383	11.216			3.3858	2.442	NaN	1	0	Median	11120000	2612900	8506800	313	526	300	685	1392	1392		1	9606
ATIAGGGVIPHIHK	1	0	Unmodified	1369.783	0.78301836	121	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	15.905	15.905	3	0.0023852	8400	DP1063-10	78.964	78.964			2.7007	1.6021	NaN	1	0	Median	43695000	12548000	31146000	314	121	301	686	1393;1394;1395	1395		3	9606
ATLLQQR	0	1	Unmodified	828.48175	0.48175096	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				15.031	15.031	2	0.015158	4962	DP1063-6	106.76	56.641			NaN	NaN	NaN	0	0	Median	153370000	0	153370000	315	211	302	687;688	1396;1397;1398;1399	1396		4	9606
ATLNAFLYR	0	1	Unmodified	1067.5764	0.57637963	536	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			19.829	19.829	2	0.031326	12997	DP1063-8	89.142	48.364			NaN	NaN	NaN	0	0	Median	10645000	0	10645000	316	536	303	689	1400	1400		1	9606
ATLVDHGIR	0	1	Unmodified	980.54033	0.54032847	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				14.48	14.48	2	3.1526E-10	4272	DP1063-6	157.33	87.331			0.96594	0.97895	2.5647	2	0	Median	440570000	221050000	219520000	317	355	304	690;691	1401;1402;1403;1404;1405;1406;1407;1408	1403		8	9606
ATLVDHGIRR	0	2	Unmodified	1136.6414	0.6414395	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					13.505	13.505	2;3	4.6528E-05	3031	DP1063-6	125.31	53.972			1.0196	1.0372	NaN	1	0	Median	21587000	9856100	11731000	318	355	305	692;693	1409;1410;1411;1412;1413;1414	1411		6	9606
ATNFLAHEK	1	0	Acetyl (Protein N-term)	1071.5349	0.53490874	180	P29692	EEF1D	Elongation factor 1-delta	yes	yes	1	0	0	4	0				1		17.913	17.913	2	0.031469	10474	DP1063-9	114.89	114.89			0.89736	0.92233	NaN	1	0	Median	26121000	14220000	11901000	319	180	306	694	1415;1416;1417	1415		3	9606
ATQQQHDFTLTQTADGR	0	1	Unmodified	1916.8977	0.89766678	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	2					15.915	15.915	2;3	6.4433E-86	6034	DP1063-6	293.41	252.33			NaN	NaN	NaN	0	0	Median	35835000	0	35835000	320	318	307	695;696	1418;1419;1420;1421	1420		4	9606
ATTATMATSGSAR	0	1	Acetyl (Protein N-term);Oxidation (M)	1282.5823	0.58232922	199	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	1	0	4	0				1		14.741	14.741	2	9.1959E-07	6213	DP1063-9	157.97	127.9			2.0159	2.1087	NaN	1	0	Median	13267000	4603500	8663900	321	199	308	697	1422;1423	1422	225	2	9606
ATTGTQTLLSSGTR	0	1	Unmodified	1392.7209	0.72087161	447	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	2	0		1				16.305	16.305	2	1.7377E-07	8083	DP1063-7	156.58	96.063			NaN	NaN	NaN	0	0	Median	11584000	0	11584000	322	447	309	698	1424;1425;1426	1425		3	9606
ATVLQTVFEDYVHSSER	0	1	Unmodified	1979.9589	0.95887005	522	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	2	0		1				23.18	23.18	3	0.00035923	17284	DP1063-7	128.64	96.94			NaN	NaN	NaN	0	0	Median	14217000	0	14217000	323	522	310	699	1427;1428	1427		2	9606
ATYDGNHDTFR	0	1	Unmodified	1295.5531	0.553078	166	P33947;P24390	KDELR2;KDELR1	ER lumen protein-retaining receptor 2;ER lumen protein-retaining receptor 1	yes	no	0	0	0	1	0	1					14.338	14.338	3	0.00011878	4149	DP1063-6	109.39	109.39			3.5402	3.7061	NaN	1	0	Median	6961300	1565600	5395700	324	166	311	700	1429;1430	1430		2	9606
AVAFQNPQTHVIENLHAAAYR	0	1	Unmodified	2349.1978	0.19781197	162	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				2		18.255	18.255	3;4	5.3195E-06	10966	DP1063-9	105.5	105.5			1.1678	1.2216	9.5449	2	0	Median	41007000	16750000	24257000	325	162	312	701;702	1431;1432;1433;1434	1431		4	9606
AVAHHTDCTFIR	0	1	Unmodified	1426.6776	0.67756701	266	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	4	0				1		13.814	13.814	3	0.00070337	5035	DP1063-9	89.805	63.596			1.391	1.455	NaN	1	0	Median	9965300	4807700	5157600	326	266	313	703	1435;1436	1435		2	9606
AVCMLSNTTAIAEAWAR	0	1	Oxidation (M)	1879.8921	0.89205282	310;434	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	1	0	3.67	0.745			3	2	1	20.773	20.773	2;3	5.2381E-48	14386	DP1063-9	227.93	217.29			3.1399	3.2845	2.5884	2	0	Median	264880000	52529000	212350000	327	310;434	314	704;705;706;707;708;709	1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448	1446	365	12	9606
AVCMLSNTTAIAEAWAR	0	1	Unmodified	1863.8971	0.89713819	310;434	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	4	0				1		22.273	22.273	2	6.7652E-48	16290	DP1063-9	230.59	188.12			3.8212	3.9972	NaN	1	0	Median	15627000	3091300	12536000	328	310;434	314	710	1449;1450	1450		2	9606
AVCMLSNTTAVAEAWAR	0	1	Oxidation (M)	1865.8764	0.87640275	492	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	4.5	0.5				1	1	19.946	19.946	2	0.0095341	13412	DP1063-9	101.39	61.603			NaN	NaN	NaN	0	0	Median	16197000	0	16197000	329	492	315	711;712	1451;1452	1452	569	2	9606
AVDFAER	0	1	Unmodified	806.39227	0.39226725	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4	0				1		15.426	15.426	2	0.00054462	7098	DP1063-9	133.47	98.364			11.926	12.475	NaN	1	0	Median	231880000	17776000	214110000	330	298	316	713	1453;1454;1455;1456	1454		4	9606
AVDIPHMDIEALK	1	0	Oxidation (M)	1466.7439	0.74391524	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					2	17.82	17.82	2;3	0.00060211	10828	DP1063-10	80.312	57.22			3.2864	1.9496	NaN	1	0	Median	90909000	15472000	75437000	331	295	317	714;715	1457;1458;1459	1458	350	3	9606
AVDIPHMDIEALKK	2	0	Oxidation (M)	1594.8389	0.83887826	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	1	5	0					2	16.594	16.594	2;3	0.0087036	9198	DP1063-10	94.688	65.05			NaN	NaN	NaN	0	0	Median	45242000	0	45242000	332	295	318	716;717	1460;1461;1462	1461	350	3	9606
AVDPEDDFQR	0	1	Unmodified	1190.5204	0.52038089	489	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		16.609	16.609	2	0.0014741	8732	DP1063-9	141.52	141.52			NaN	NaN	NaN	0	0	Median	19452000	0	19452000	333	489	319	718	1463;1464	1463		2	9606
AVDSLVPIGR	0	1	Unmodified	1025.5869	0.58694431	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.61	18.61	2	5.1533E-06	11314	DP1063-8	137.9	88.546			0.64218	0.6654	NaN	1	0	Median	39996000	22235000	17761000	334	170	320	719	1465;1466;1467;1468	1465		4	9606
AVEWESQR	0	1	Unmodified	1003.4723	0.47230849	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					15.671	15.671	2	0.036968	5768	DP1063-6	91.9	59.945			NaN	NaN	NaN	0	0	Median	5600800	0	5600800	335	57	321	720	1469	1469		1	9606
AVFADLDLR	0	1	Acetyl (Protein N-term)	1060.5553	0.55530983	315	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	1	0	0	4	0				1		25.081	25.081	2	0.023138	19653	DP1063-9	80.438	35.991			NaN	NaN	NaN	0	0	Median	3945000	0	3945000	336	315	322	721	1470;1471	1471		2	9606
AVFPSIVGRPR	0	2	Unmodified	1197.6982	0.6982261	252;308	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;P68133;P68032;P63267;P62736	ACTG1;ACTB;POTEE;POTEF;POTEI;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	4	0				2		17.577	17.577	2;3	1.6046E-05	10053	DP1063-9	125.97	125.97			2.0723	2.1026	125.67	2	0	Median	68378000	23883000	44495000	337	252;308	323	722;723	1472;1473;1474;1475;1476	1474		5	9606
AVFVDLEPTVIDEVR	0	1	Unmodified	1700.8985	0.89850163	310;434;492	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.18	0.625	1		25	6	1	30.166	30.166	2;3	3.8800000000000005E-33	16392	DP1063-9	248.98	248.98			3.0486	2.7385	23.398	5	0	Plateau	1164300000	263440000	900840000	338	310;434;492	324	724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;750;751;752;753;754;755;756	1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513;1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540	1532		64	9606
AVGASFPLYEPAK	1	0	Unmodified	1348.7027	0.70270235	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				19.431	19.431	2	0.005639	12404	DP1063-7	108.7	74.775			NaN	NaN	NaN	0	0	Median	69271000	0	69271000	339	211	325	757;758	1541;1542	1542		2	9606
AVIGIGIEEEDRK	1	1	Unmodified	1427.762	0.76200815	76	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	1	2	0		1				17.141	17.141	2	0.034448	9216	DP1063-7	90.827	51.205			NaN	NaN	NaN	0	0	Median	6154700	0	6154700	340	76	326	759	1543	1543		1	9606
AVIGMTAGATGAFVGTPAEVALIR	0	1	Oxidation (M)	2288.2199	0.21985254	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	1	0	4	0				1		21.788	21.788	2	4.1028E-52	15674	DP1063-9	220.46	172.06			NaN	NaN	NaN	0	0	Median	6402500	0	6402500	341	337	327	760	1544;1545;1546;1547	1546	400	4	9606
AVLTFALDSVER	0	1	Unmodified	1319.7085	0.70851601	528	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	5	0					1	21.442	21.442	2	0.00018014	15521	DP1063-10	150.81	81.387			NaN	NaN	NaN	0	0	Median	18722000	0	18722000	342	528	328	761	1548;1549	1548		2	9606
AVLVDLEPGTMDSVR	0	1	Oxidation (M)	1616.808	0.80797206	311;414	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	no	no	0	1	0	4	0.816			1	1	1	19.326	19.326	2	0.0011608	12439	DP1063-9	103.21	83.083			3.9688	4.1124	39.263	3	0	Plateau	438130000	90423000	347700000	343	311;414	329	762;763;764	1550;1551;1552;1553;1554;1555;1556;1557;1558	1557	371	9	9606
AVNYVGAGTVEFIMDSK	1	0	Oxidation (M)	1815.8713	0.8713006	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0.894		2	1	2		20.531	20.531	2;3	7.9807E-05	13833	DP1063-7	119.04	119.04			1.1099	1.1178	19.699	5	0	Median	407470000	196680000	210780000	344	483	330	765;766;767;768;769	1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571	1564	551	13	9606
AVNYVGAGTVEFIMDSK	1	0	Unmodified	1799.8764	0.87638598	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				22.185	22.185	2	1.5263E-11	15956	DP1063-7	169.09	169.09			1.2283	1.2657	NaN	1	0	Median	71623000	33444000	38179000	345	483	330	770	1572;1573	1572		2	9606
AVPGTEVPGHK	1	0	Unmodified	1090.5771	0.57710791	435	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	2	0		1				13.607	13.607	2	0.051361	4480	DP1063-7	78.113	40.605			NaN	NaN	NaN	0	0	Median	3436100	0	3436100	346	435	331	771	1574	1574		1	9606
AVPKEDIYSGGGGGGSR	1	1	Unmodified	1605.7747	0.7746981	357	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	1	4	0				1		14.643	14.643	3	0.0038642	6142	DP1063-9	94.569	45.38			NaN	NaN	NaN	0	0	Median	5917400	0	5917400	347	357	332	772	1575;1576	1576		2	9606
AVQAQGGESQQEAQR	0	1	Unmodified	1585.7445	0.7444606	388	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.711	12.711	2	1.0209E-13	2184	DP1063-6	181.31	122.25			NaN	NaN	NaN	0	0	Median	1796900	0	1796900	348	388	333	773	1577;1578	1578		2	9606
AVSDASAGDYGSAIETLVTAISLIK	1	0	Unmodified	2451.2745	0.27445011	409	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	3	0			1			28.274	28.274	2	3.9509E-08	22962	DP1063-8	137.44	106.9			NaN	NaN	NaN	0	0	Median	2106600	0	2106600	349	409	334	774	1579;1580;1581	1579		3	9606
AVTEQGAELSNEER	0	1	Unmodified	1531.7114	0.71142914	176	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	4	0				3		15.188	15.188	2	2.023E-06	6836	DP1063-9	159.09	110.03			NaN	NaN	NaN	0	0	Median	0	0	0	350	176	335	775;776;777	1582;1583;1584	1582		3	9606
AVTEQGHELSNEER	0	1	Unmodified	1597.7332	0.73322721	185	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	4	0				1		13.683	13.683	3	0.0050791	4868	DP1063-9	69.108	69.108			1.098	1.1486	NaN	1	0	Median	8614500	3563200	5051300	351	185	336	778	1585;1586	1586		2	9606
AVTLDKDAYYR	1	1	Acetyl (Protein N-term)	1355.6721	0.67213051	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	1	1.33	0.471	2	1				18.551	18.551	2	2.8898999999999997E-21	9382	DP1063-6	199.46	137.78			NaN	NaN	NaN	0	0	Median	15190000	0	15190000	352	585	337	779;780;781	1587;1588;1589	1588		3	9606
AVVEVNIPVESEVNLK	1	0	Unmodified	1737.9513	0.95126548	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				20.507	20.507	2	4.9828E-09	13790	DP1063-7	165.35	92.079			NaN	NaN	NaN	0	0	Median	42472000	0	42472000	353	532	338	782	1590;1591	1591		2	9606
AVVGVVAGGGR	0	1	Unmodified	940.54541	0.54541385	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4.5	0.5				1	1	15.254	15.254	2	3.0547E-05	6858	DP1063-9	130.27	63.278			12.495	13.07	NaN	1	0	Median	418750000	28401000	390350000	354	298	339	783;784	1592;1593;1594;1595;1596	1594		5	9606
AVVIVDDR	0	1	Unmodified	885.49198	0.4919813	163;397	P23246;Q15233	SFPQ;NONO	Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein	no	no	0	0	0	2.5	0.5		1	1			15.809	15.809	2	0.0027213	7801	DP1063-8	116.54	51.739			1.9764	2.0479	NaN	1	0	Median	39054000	6570600	32483000	355	163;397	340	785;786	1597;1598;1599;1600	1600		4	9606
AVVLEYFTR	0	1	Unmodified	1096.5917	0.59169534	81	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	5	0					1	20.521	20.521	2	0.0063002	14380	DP1063-10	121.62	75.901			NaN	NaN	NaN	0	0	Median	3159900	0	3159900	356	81	341	787	1601	1601		1	9606
AVVMDLLR	0	1	Oxidation (M)	931.51609	0.51608756	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				18.358	18.358	2	0.011449	8999	DP1063-6	77.058	44.587			0.98651	0.99534	0.58465	2	0	Median	515960000	247360000	268600000	357	355	342	788;789	1602;1603;1604;1605;1606	1605	413	5	9606
AVVMDLLR	0	1	Unmodified	915.52117	0.52117293	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				20.33	20.33	2	1.73E-05	11682	DP1063-6	139.31	69.881			0.99619	1.0195	5.2811	2	0	Median	237650000	117990000	119660000	358	355	342	790;791	1607;1608;1609;1610;1611;1612	1609		6	9606
AVVVNAAQLASYSQSK	1	0	Unmodified	1634.8628	0.86278482	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		18.709	18.709	2	2.6469E-20	11581	DP1063-9	207.34	168.59			NaN	NaN	NaN	0	0	Median	17244000	0	17244000	359	337	343	792	1613;1614	1613		2	9606
AYGGAYDVMSSK	1	0	Oxidation (M)	1263.5442	0.5441528	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		15.253	15.253	2	4.3267E-06	7051	DP1063-8	153.1	140.29			0.9609	0.97766	1.652	2	0	Median	122020000	64738000	57286000	360	95	344	793;794	1615;1616;1617;1618;1619;1620;1621;1622	1618	94	8	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Oxidation (M)	2765.2789	0.27890034	310;434	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	1	0	3.33	0.471			2	1		19.592	19.592	2;3	1.8029999999999999E-22	12603	DP1063-8	184.21	152.14			2.7988	2.8476	11.54	2	0	Median	291320000	62762000	228560000	361	310;434	345	795;796;797	1623;1624;1625;1626;1627;1628;1629;1630;1631	1627	366	9	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Unmodified	2749.284	0.28398571	310;434	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3	0			1			20.353	20.353	3	7.255899999999999E-22	13616	DP1063-8	173.18	143.46			NaN	NaN	NaN	0	0	Median	30309000	0	30309000	362	310;434	345	798	1632	1632		1	9606
AYIAYELNSVQHR	0	1	Unmodified	1562.7841	0.78414057	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				17.732	17.732	2;3	1.1655000000000001E-69	9993	DP1063-7	244.01	244.01			1.0314	1.0381	7.5164	4	0	Median	1032599999.9999999	505980000	526580000	363	355	346	799;800;801;802	1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643;1644;1645;1646;1647;1648	1644		16	9606
AYNMVDIIHSVVDER	0	1	Oxidation (M)	1775.8512	0.85123386	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.67	0.471			1	2		19.464	19.464	2;3	0.0005212	12618	DP1063-9	91.207	59.681			1.1037	1.1491	6.0865	2	0	Median	94880000	42313000	52567000	364	95	347	803;804;805	1649;1650;1651;1652;1653;1654;1655;1656	1652	95	8	9606
AYNMVDIIHSVVDER	0	1	Unmodified	1759.8563	0.85631924	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		22.774	22.774	2;3	8.6541E-06	16731	DP1063-8	153.7	135.96			0.99979	1.0359	0.76718	2	0	Median	47066000	21819000	25246000	365	95	347	806;807;808	1657;1658;1659;1660;1661;1662	1660		6	9606
AYSEALAAFGNGALFVEK	1	0	Unmodified	1856.9309	0.93086439	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				22.786	22.786	2;3	6.8979E-37	16679	DP1063-7	225.09	225.09			1.0033	1.0339	1.3243	2	0	Median	334920000	167990000	166930000	366	130	348	809;810	1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678	1665		16	9606
AYVEANQMLGDLIK	1	0	Unmodified	1563.7967	0.79667909	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				21.876	21.876	2	2.5724E-08	15591	DP1063-7	168.3	130			NaN	NaN	NaN	0	0	Median	73886000	38440000	35446000	367	130	349	811;812	1679;1680;1681;1682;1683	1682		5	9606
AYVEANQMLGDLIK	1	0	Oxidation (M)	1579.7916	0.79159371	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	4	0				1		19.73	19.73	2	0.0038001	13090	DP1063-9	77.062	55.07			0.68193	0.70091	NaN	1	0	Median	16442000	8070900	8371100	368	130	349	813	1684	1684	151	1	9606
AYVWDNNKDLAEWLEK	2	0	Unmodified	1992.9581	0.95814177	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.25	1.09	1	2		1		21.886	21.886	2;3	0.0012166	15693	DP1063-7	87.932	71.861			0.85281	0.87388	35.494	4	0	Median	60846000	32627000	28218000	369	355	350	814;815;816;817	1685;1686;1687;1688;1689;1690	1689		6	9606
CADFGMAADKNK	2	0	Oxidation (M)	1342.5646	0.56457067	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3	0			1			13.202	13.202	3	0.00037338	4452	DP1063-8	87.641	72.439			0.8777	0.8544	NaN	1	0	Median	32763000	17067000	15695000	370	95	351	818	1691;1692	1691	96	2	9606
CAPMSDLTDLK	1	0	Oxidation (M)	1265.5632	0.56317368	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				16.672	16.672	2	0.042034	8553	DP1063-7	79.974	42.162			NaN	NaN	NaN	0	0	Median	0	0	0	371	211	352	819	1693	1693		1	9606
CCAADDKEACFAVEGPK	2	0	Unmodified	1926.791	0.79101814	12	CON__P02769			yes	yes	0	0	1	2	0.816	2	2	2			16.204	16.204	2;3	9.0171E-59	8283	DP1063-8	258.39	210.42		+	NaN	NaN	NaN	0	0	Median	501300000	501300000	0	372	12	353	820;821;822;823;824;825	1694;1695;1696;1697;1698;1699;1700;1701;1702;1703;1704;1705;1706	1706		13	
CCCIYEKPR	1	1	Unmodified	1284.5413	0.5413328	66	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	0	1	5	0					1	13.851	13.851	3	0.0042258	5898	DP1063-10	105.52	89.631			NaN	NaN	NaN	0	0	Median	5696700	0	5696700	373	66	354	826	1707;1708	1708		2	9606
CCLTYCFNKPEDK	2	0	Unmodified	1733.7211	0.72114766	300	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	0	1	5	0					1	16.79	16.79	3	0.0020354	9471	DP1063-10	108.68	91.473			NaN	NaN	NaN	0	0	Median	12358000	0	12358000	374	300	355	827	1709;1710	1710		2	9606
CCTESLVNR	0	1	Unmodified	1137.4907	0.49067744	12	CON__P02769			no	no	0	0	0	3.33	1.7	1			1	1	14.878	14.878	2	0.0021843	4770	DP1063-6	197.6	171.49		+	NaN	NaN	NaN	0	0	Median	216400000	216400000	0	375	12	356	828;829;830	1711;1712;1713;1714;1715;1716	1715		6	
CDSSPDSAEDVR	0	1	Unmodified	1336.5201	0.52012289	15	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	0	3	0			1			13.935	13.935	2	1.0308E-18	5341	DP1063-8	237.51	165.63		+	NaN	NaN	NaN	0	0	Median	10852000	10852000	0	376	15	357	831	1717;1718	1717		2	9606
CDSSPDSAEDVRK	1	1	Unmodified	1464.6151	0.61508591	15	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	1	4	0				1		12.879	12.879	3	0.042235	3924	DP1063-9	65.809	47.477		+	NaN	NaN	NaN	0	0	Median	3014300	3014300	0	377	15	358	832	1719	1719		1	9606
CEGINISGNFYR	0	1	Unmodified	1428.6456	0.64559818	203	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	5	0					1	19.215	19.215	2	6.1583E-55	12629	DP1063-10	254.83	231.48			9.9104	7.1479	NaN	1	0	Median	72976000	7616400	65359000	378	203	359	833	1720;1721;1722;1723;1724	1721		5	9606
CESAFLSK	1	0	Unmodified	940.43242	0.43241751	321	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	15.823	15.823	2	0.002645	8338	DP1063-10	117.4	76.826			7.5086	4.4544	NaN	1	0	Median	28424000	3488100	24936000	379	321	360	834	1725;1726	1725		2	9606
CFGTGAAGNR	0	1	Unmodified	1009.44	0.4399625	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					13.922	13.922	2	0.022358	3573	DP1063-6	93.374	56.979			NaN	NaN	NaN	0	0	Median	5081500	0	5081500	380	318	361	835	1727	1727		1	9606
CFIVGADNVGSK	1	0	Unmodified	1265.6074	0.60742176	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		17.651	17.651	2	5.1474E-05	10113	DP1063-9	145.25	129.37			11.02	11.327	NaN	1	0	Median	76007000	5044800	70962000	381	98	362	836	1728;1729;1730	1728		3	9606
CGSVLVR	0	1	Unmodified	789.41671	0.41670786	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		14.412	14.412	2	0.029074	5841	DP1063-9	99.384	78.902			NaN	NaN	NaN	0	0	Median	2626300	0	2626300	382	141	363	837	1731	1731		1	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	2	0	Oxidation (M)	2930.4154	0.41539382	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2	0		2				19.623	19.623	3;4	1.5628E-14	12671	DP1063-7	118.37	118.37			0.7523	0.77635	16.423	2	0	Median	112020000	61407000	50610000	383	94	364	838;839	1732;1733;1734;1735	1735	83	4	9606
CMQLTDFILK	1	0	Oxidation (M)	1283.6254	0.62538001	231	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	1	0	4.5	0.5				1	1	20.95	20.95	2	0.007056	14966	DP1063-10	131.62	90.076			NaN	NaN	NaN	0	0	Median	23346000	0	23346000	384	231	365	840;841	1736;1737;1738;1739	1737	266	4	9606
CNLLAEK	1	0	Unmodified	846.42694	0.4269382	15	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	0	3	0			1			15.417	15.417	2	0.036861	7303	DP1063-8	95.352	3.726		+	NaN	NaN	NaN	0	0	Median	32821000	32821000	0	385	15	366	842	1740	1740		1	9606
CNNVLYIR	0	1	Unmodified	1050.528	0.52804923	276	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	0	0	5	0					1	17.482	17.482	2	0.0090319	10390	DP1063-10	110.61	62.05			NaN	NaN	NaN	0	0	Median	4334700	0	4334700	386	276	367	843	1741	1741		1	9606
CPEALFQPSFLGMESCGIHETTFNSIMK	1	0	2 Oxidation (M)	3262.4443	0.44432746	252	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	2	0	4	0				1		21.502	21.502	3	0.0011107	15327	DP1063-9	56.468	56.468			0.40866	0.42003	NaN	1	0	Median	12085000	7136200	4949000	387	252	368	844	1742;1743	1743	304;305	2	9606
CPFTGNVSIR	0	1	Unmodified	1149.5601	0.56007764	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	17.394	17.394	2	0.0014741	10210	DP1063-10	163.15	129.15			NaN	NaN	NaN	0	0	Median	75176000	0	75176000	388	275	369	845	1744;1745	1745		2	9606
CSLSLVGR	0	1	Unmodified	890.46439	0.46438634	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		16.972	16.972	2	0.011914	9239	DP1063-9	82.241	53.091			1.1557	1.2089	NaN	1	0	Median	14060000	6226500	7833700	389	377	370	846	1746	1746		1	9606
CTGGEVGATSALAPK	1	0	Unmodified	1417.6871	0.68712864	181	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	15.99	15.99	2	0.0015277	8472	DP1063-10	125.54	98.494			9.5654	5.6745	NaN	1	0	Median	60109000	6091100	54017000	390	181	371	847	1747;1748	1748		2	9606
CTVFHGAQVEDAFR	0	1	Unmodified	1635.7464	0.74637486	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					18	18	3	0.010091	8652	DP1063-6	85.163	53.506			NaN	NaN	NaN	0	0	Median	5765500	0	5765500	391	224	372	848	1749;1750	1750		2	9606
CTYLNILLQTR	0	1	Unmodified	1393.7388	0.73877028	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				22.268	22.268	2	0.039409	16133	DP1063-7	81.017	54.953			NaN	NaN	NaN	0	0	Median	8366000	0	8366000	392	482	373	849	1751	1751		1	9606
CVEVETDVVSNTSGSAR	0	1	Unmodified	1808.8211	0.82105594	390	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				1		16.757	16.757	2	1.0103E-59	8925	DP1063-9	262.11	201.47			NaN	NaN	NaN	0	0	Median	16667000	0	16667000	393	390	374	850	1752;1753;1754	1753		3	9606
CVFALREENK	1	1	Unmodified	1264.6234	0.62340617	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.128	16.128	2;3	2.1758E-17	6316	DP1063-6	191.17	174.63			0.9264	0.97835	4.6441	2	0	Median	72398000	34138000	38259000	394	355	375	851;852	1755;1756;1757;1758;1759;1760	1756		6	9606
CVYTIPAHQNLVTGVK	1	0	Unmodified	1798.94	0.93998929	50	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			17.741	17.741	3	0.016618	10224	DP1063-8	79.81	52.841			NaN	NaN	NaN	0	0	Median	24494000	0	24494000	395	50	376	853	1761	1761		1	9606
DAEAWFNEK	1	0	Unmodified	1108.4825	0.48253882	16	CON__P13645;P13645;Q7Z3Y7;CON__Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8;CON__Q7Z3Z0	KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	yes	no	0	0	0	3	1.41	1	1	1	1	1	19.433	19.433	2	0.00021489	12450	DP1063-8	164.72	111.23		+	NaN	NaN	NaN	0	0	Median	44773000	44773000	0	396	16	377	854;855;856;857;858	1762;1763;1764;1765;1766;1767;1768;1769;1770	1768		9	9606
DAEDVDLNHYR	0	1	Unmodified	1345.5899	0.58985744	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				2		16.368	16.368	2;3	3.7968E-12	8473	DP1063-9	215.38	96.887			NaN	NaN	NaN	0	0	Median	85906000	0	85906000	397	405	378	859;860	1771;1772;1773;1774	1772		4	9606
DAFLGSFLYEYSR	0	1	Unmodified	1566.7355	0.73545904	12	CON__P02769			yes	yes	0	0	0	2	1.41	16		4	3	2	20.522	20.522	2;3	1.1707999999999999E-66	21534	DP1063-8	289.67	260.12		+	NaN	NaN	NaN	0	0	Median	21304000000	21304000000	0	398	12	379	861;862;863;864;865;866;867;868;869;870;871;872;873;874;875;876;877;878;879;880;881;882;883;884;885	1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795;1796;1797;1798;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893	1832		119	
DAGQISGLNVLR	0	1	Unmodified	1241.6728	0.67279921	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				19.826	19.826	2	9.3875E-05	12909	DP1063-7	135.55	104.05			2.3892	2.4684	NaN	1	0	Median	30411000	9698900	20712000	399	198	380	886	1894;1895;1896;1897	1895		4	9606
DAGTIAGLNVLR	0	1	Unmodified	1198.667	0.66698555	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0.816		1	1	1		20.606	20.606	2	3.2863E-05	13942	DP1063-7	148.52	103.77			4.8999	5.0541	19.336	2	0	Median	113560000	19649000	93911000	400	128	381	887;888;889	1898;1899;1900;1901;1902;1903;1904;1905;1906	1899		9	9606
DAGVIAGLNVLR	0	1	Unmodified	1196.6877	0.68772099	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			21.471	21.471	2	0.00011378	15070	DP1063-8	126.24	81.262			4.4922	4.6547	NaN	1	0	Median	282390000	46215000	236180000	401	124	382	890	1907;1908	1908		2	9606
DAHQSLLATR	0	1	Unmodified	1110.5782	0.57817054	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			15.114	15.114	1;2	1.952E-05	6912	DP1063-8	134.23	98.932			0.90473	0.9364	8.3294	3	0	Plateau	147520000	81763000	65761000	402	130	383	891;892;893	1909;1910;1911;1912;1913;1914	1912		5	9606
DAHSIHGTNPQYLVEK	1	0	Unmodified	1807.8853	0.88531118	454	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	4	0				1		15.626	15.626	3	9.6651E-05	7450	DP1063-9	138.28	100.63			NaN	NaN	NaN	0	0	Median	8838300	0	8838300	403	454	384	894	1915;1916	1916		2	9606
DAIPENLPPLTADFAEDK	1	0	Unmodified	1954.9524	0.95238769	12	CON__P02769			yes	yes	0	0	0	2.33	1.25	1	1		1		22.264	22.264	2	4.3E-23	14127	DP1063-6	193.11	148.47		+	NaN	NaN	NaN	0	0	Median	141900000	141900000	0	404	12	385	895;896;897	1917;1918;1919;1920;1921;1922	1918		6	
DAIPENLPPLTADFAEDKDVCK	2	0	Unmodified	2457.1734	0.17335586	12	CON__P02769			yes	yes	0	0	1	2.29	1.03	2	2	2	1		21.012	21.012	2;3	2.1358E-07	14407	DP1063-8	152.34	131.53		+	NaN	NaN	NaN	0	0	Median	992400000	992400000	0	405	12	386	898;899;900;901;902;903;904	1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937	1933		15	
DALSDLALHFLNK	1	0	Unmodified	1455.7722	0.7721789	233	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			4			23.971	23.971	2;3	0.0018631	18216	DP1063-8	129.88	81.437			NaN	NaN	NaN	0	0	Median	13079000	4693300	8386100	406	233	387	905;906;907;908	1938;1939;1940;1941;1942	1938		5	9606
DALSSVQESQVAQQAR	0	1	Unmodified	1715.8438	0.84384029	86	P02656	APOC3	Apolipoprotein C-III	yes	yes	0	0	0	5	0					1	17.472	17.472	2	4.2158999999999995E-40	10348	DP1063-10	251.03	194.98			NaN	NaN	NaN	0	0	Median	19622000	19622000	0	407	86	388	909	1943;1944	1944		2	9606
DAMHEMEEMIETK	1	0	3 Oxidation (M)	1640.6368	0.63680891	314	P78316	NOP14	Nucleolar protein 14	yes	yes	0	3	0	2	0		2				13.994	13.994	2;3	0.016267	4973	DP1063-7	67.207	42.863			NaN	NaN	NaN	0	0	Median	9108300	0	9108300	408	314	389	910;911	1945;1946	1946	373;374;375	2	9606
DANGNSFATR	0	1	Unmodified	1051.4683	0.46828574	281	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	4	0				1		14.273	14.273	2	0.0031935	5718	DP1063-9	99.013	79.919			4.7312	4.949	NaN	1	0	Median	11695000	2181600	9513300	409	281	390	912	1947	1947		0	9606
DAQVVQVVLDGLSNILK	1	0	Unmodified	1810.02	0.020013746	37	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	3	0			1			28.421	28.421	2	0.045753	23173	DP1063-8	78.373	42.728			NaN	NaN	NaN	0	0	Median	1447500	0	1447500	410	37	391	913	1948	1948		1	9606
DAVTYTEHAK	1	0	Unmodified	1133.5353	0.53530267	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	13.594	13.594	2	1.6288E-16	5569	DP1063-10	186.76	151.41			3.2754	1.9431	NaN	1	0	Median	447980000	98103000	349870000	411	285	392	914	1949;1950;1951;1952;1953	1952		5	9606
DAVTYTEHAKR	1	1	Unmodified	1289.6364	0.6364137	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	13.008	13.008	3	6.4071E-06	5016	DP1063-10	126.71	126.71			3.0705	3.0302	NaN	1	0	Median	15452000	4265300	11187000	412	285	393	915	1954;1955;1956;1957	1955		4	9606
DDALSLKELITEAQTK	2	0	Unmodified	1773.936	0.93600934	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0		1				21.838	21.838	3	0.02293	15570	DP1063-7	75.143	36.482			NaN	NaN	NaN	0	0	Median	7847400	0	7847400	413	418	394	916	1958	1958		1	9606
DDCGTFEDTGPLLQFDYK	1	0	Unmodified	2119.9045	0.90445122	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				23.028	23.028	2	0.0095445	17116	DP1063-7	95.631	73.856			NaN	NaN	NaN	0	0	Median	7105800	0	7105800	414	381	395	917	1959	1959		1	9606
DDEVQVVR	0	1	Unmodified	958.47197	0.47197413	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	0	5	0					1	15.379	15.379	2	0.0015004	7732	DP1063-10	126.28	77.522			9.3029	6.7098	NaN	1	0	Median	54592000	5612600	48980000	415	255	396	918	1960;1961	1961		2	9606
DDGLFSGDPNWFPK	1	0	Unmodified	1593.71	0.70997257	196	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	23.566	23.566	2	0.0091873	18000	DP1063-10	97.813	80.9			NaN	NaN	NaN	0	0	Median	5270000	0	5270000	416	196	397	919	1962	1962		1	9606
DDPHACYSTVFDK	1	0	Unmodified	1553.6457	0.64565776	12	CON__P02769			yes	yes	0	0	0	2.5	1.12	2	2	2	2		17.396	17.396	2;3	0.00015844	9774	DP1063-8	148.18	132.29		+	NaN	NaN	NaN	0	0	Median	3059699999.9999995	3059699999.9999995	0	417	12	398	920;921;922;923;924;925;926;927	1963;1964;1965;1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977	1972		15	
DDPHACYSTVFDKLK	2	0	Unmodified	1794.8247	0.82468476	12	CON__P02769			yes	yes	0	0	1	2.33	1.11	2	1	2	1		18.45	18.45	2;3	1.0933E-08	11050	DP1063-8	130.95	130.95		+	NaN	NaN	NaN	0	0	Median	519310000	519310000	0	418	12	399	928;929;930;931;932;933	1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988	1983		11	
DDPSKPVHLTAFLGYK	2	0	Unmodified	1786.9254	0.92538508	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				1		19.215	19.215	3	0.0019264	12219	DP1063-9	105.19	82.336			NaN	NaN	NaN	0	0	Median	41910000	0	41910000	419	201	400	934	1989;1990	1990		2	9606
DDSPDLPK	1	0	Unmodified	885.40798	0.40797689	12	CON__P02769			yes	yes	0	0	0	3	1		1		1		15.309	15.309	2	0.0013245	6687	DP1063-7	135.84	82.288		+	NaN	NaN	NaN	0	0	Median	280160000	280160000	0	420	12	401	935;936	1991;1992	1991		2	
DDVAPESGDTTVK	1	0	Unmodified	1332.6045	0.60450445	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			14.608	14.608	2	0.0032065	6245	DP1063-8	119.34	81.786			NaN	NaN	NaN	0	0	Median	18071000	0	18071000	421	75	402	937	1993;1994	1993		2	9606
DDVAPESGDTTVKKPESK	3	0	Unmodified	1901.9218	0.92181584	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			13.351	13.351	3	9.1105E-06	4597	DP1063-8	142.4	114.31			NaN	NaN	NaN	0	0	Median	11355000	0	11355000	422	75	403	938	1995	1995		1	9606
DECNVVEVVAR	0	1	Unmodified	1288.6082	0.60815004	70	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	5	0					1	18.26	18.26	2	0.0074739	11360	DP1063-10	119.68	61.434			NaN	NaN	NaN	0	0	Median	8208700	0	8208700	423	70	404	939	1996;1997	1996		2	9606
DEDPYCVACFGELFAPK	1	0	Unmodified	2016.8597	0.85974963	370	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		24.342	24.342	2	0.000498	18807	DP1063-9	113.07	98.437			0.78503	0.80687	NaN	1	0	Median	5412500	3859500	1553000	424	370	405	940	1998	1998		1	9606
DEILPTTPISEQK	1	0	Unmodified	1469.7613	0.76133944	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		18.782	18.782	2	0.00011369	11661	DP1063-9	149.33	149.33			2.6067	2.6792	NaN	1	0	Median	33169000	9119800	24049000	425	164	406	941	1999;2000	2000		2	9606
DELHIVEAEAMNYEGSPIK	1	0	Oxidation (M)	2160.0045	0.0044996155	105	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.1	0.3				9	1	25.388	25.388	2;3	5.1548000000000005E-24	14509	DP1063-9	188.9	172.92			NaN	NaN	NaN	0	0	Median	372230000	0	372230000	426	105	407	942;943;944;945;946;947;948;949;950;951	2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012;2013;2014;2015	2005	106	15	9606
DELHIVEAEAMNYEGSPIK	1	0	Unmodified	2144.0096	0.0095849934	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				2		21.68	21.68	2;3	1.6446E-73	15553	DP1063-9	284.51	243.12			NaN	NaN	NaN	0	0	Median	59633000	0	59633000	427	105	407	952;953	2016;2017;2018;2019;2020;2021	2021		6	9606
DEPIHILNVAIK	1	0	Unmodified	1360.7715	0.77145062	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.12	0.331	14	2				24.245	24.245	2;3	3.1368E-06	13249	DP1063-7	173.24	138.01			0.95442	0.97359	20.36	8	0	Median	594300000	180110000	414190000	428	355	408	954;955;956;957;958;959;960;961;962;963;964;965;966;967;968;969	2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049	2048		28	9606
DEPNSTPEKTEQFYR	1	1	Unmodified	1839.8275	0.82752153	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			15.91	15.91	2	0.010953	7946	DP1063-8	103.46	68.767			NaN	NaN	NaN	0	0	Median	0	0	0	429	75	409	970	2050	2050		1	9606
DESSPYAAMLAAQDVAQR	0	1	Oxidation (M)	1937.8789	0.87890517	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	0	5	0					1	18.956	18.956	2	6.9063E-05	12302	DP1063-10	139.86	113.85			NaN	NaN	NaN	0	0	Median	12798000	0	12798000	430	271	410	971	2051;2052	2052	327	2	9606
DETEFYLGK	1	0	Unmodified	1100.5026	0.50260556	150	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	5	0					1	19.141	19.141	2	0.0084813	12527	DP1063-10	113.41	57.907			NaN	NaN	NaN	0	0	Median	38433000	0	38433000	431	150	411	972	2053;2054	2054		2	9606
DETNYGIPQR	0	1	Unmodified	1191.552	0.55201537	305	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		16.667	16.667	2	0.00033786	8783	DP1063-9	103.83	75.659			1.6143	1.6886	NaN	1	0	Median	17897000	6480700	11416000	432	305	412	973	2055;2056;2057;2058;2059	2056		5	9606
DFFNYLPLSSQDPAPVR	0	1	Unmodified	1964.9632	0.96322715	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		23.545	23.545	3	6.5218E-05	17683	DP1063-8	143.88	143.88			0.72203	0.7517	11.613	2	0	Median	52881000	30534000	22347000	433	95	413	974;975	2060;2061;2062;2063;2064;2065	2061		6	9606
DFGLYVVNMFDTHQAAR	0	1	Oxidation (M)	1998.9258	0.92579578	333	Q01780	EXOSC10	Exosome component 10	yes	yes	0	1	0	2	0		1				21.278	21.278	3	0.0081726	14847	DP1063-7	80.609	55.904			NaN	NaN	NaN	0	0	Median	6060500	0	6060500	434	333	414	976	2066	2066	398	1	9606
DFLAGGIAAAISK	1	0	Unmodified	1232.6765	0.6764876	133	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	4	0				1		22.146	22.146	2	0.0021378	16100	DP1063-9	89.403	42.585			2.6698	2.7441	NaN	1	0	Median	11848000	2783000	9064800	435	133	415	977	2067;2068	2067		2	9606
DFLAGGVAAAISK	1	0	Unmodified	1218.6608	0.66083754	93	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	2.5	1.5	1			1		21.043	21.043	2	0.0023202	14659	DP1063-9	88.187	59.978			2.5965	2.6587	1.8326	2	0	Median	65703000	20052000	45651000	436	93	416	978;979	2069;2070;2071;2072	2072		4	9606
DFTATFGPLDSLNTR	0	1	Unmodified	1653.7999	0.79985021	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.957		9	1	1	1	28.449	28.449	2	4.5405E-33	16658	DP1063-7	215.04	215.04			0.8551	0.82075	15.517	5	0	Median	373980000	195960000	178020000	437	130	417	980;981;982;983;984;985;986;987;988;989;990;991	2073;2074;2075;2076;2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088;2089;2090;2091;2092;2093	2077		20	9606
DFTVASPAEFVTR	0	1	Unmodified	1438.7092	0.70924429	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.24	0.811	38	1	1	1	1	29.77	29.77	2	1.1749999999999998E-22	12921	DP1063-6	205.53	151.12			0.89296	0.90772	11.119	20	0	Median	648750000	330840000	317900000	438	355;38	418	992;993;994;995;996;997;998;999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021;1022;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033	2094;2095;2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122;2123;2124;2125;2126;2127;2128;2129;2130;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179	2099		86	9606
DFVNYLVR	0	1	Unmodified	1024.5342	0.53418046	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				21.136	21.136	2	0.034068	14652	DP1063-7	93.262	50.016			NaN	NaN	NaN	0	0	Median	8696100	0	8696100	439	345	419	1034	2180	2180		1	9606
DGGERISMPLDFK	1	1	Unmodified	1463.7079	0.70786408	408	Q16584	MAP3K11	Mitogen-activated protein kinase kinase kinase 11	yes	yes	0	0	1	3	1.22	1	2	2	2	1	23.345	23.345	2;3	3.1122E-09	17384	DP1063-8	181.87	136.85			NaN	NaN	NaN	0	0	Median	513270000	513270000	0	440	408	420	1035;1036;1037;1038;1039;1040;1041;1042	2181;2182;2183;2184;2185;2186;2187;2188;2189;2190;2191;2192;2193	2188		13	9606
DGLDYILGALESGK	1	0	Unmodified	1449.7351	0.73512469	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.12	0.599	1	13	1	1		29.912	29.912	2	1.2176E-32	20047	DP1063-7	224.66	193.37			50.464	51.409	15.168	2	0	Median	438740000	7722200	431020000	441	418	421	1043;1044;1045;1046;1047;1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058	2194;2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220	2197		27	9606
DGNASGTTLLEALDCILPPTRPTDKPLR	1	2	Unmodified	3020.5601	0.56008422	309	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	2	4	0				1		23.265	23.265	4	0.0020312	17480	DP1063-9	50.783	50.783			0.85951	1.0021	NaN	1	0	Median	5718100	3043900	2674100	442	309	422	1059	2221;2222	2221		2	9606
DGQVINETSQHHDDLE	0	0	Unmodified	1835.7922	0.79219865	114	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			15.555	15.555	2	3.1493E-09	7500	DP1063-8	167.18	137.41			NaN	NaN	NaN	0	0	Median	0	0	0	443	114	423	1060	2223;2224	2224		2	9606
DGSSSVPLSFAR	0	1	Unmodified	1221.599	0.59896556	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3.25	0.829		1	1	2		19.03	19.03	2	0.00036186	11725	DP1063-7	145.9	114.03			NaN	NaN	NaN	0	0	Median	285590000	0	285590000	444	418	424	1061;1062;1063;1064	2225;2226;2227;2228;2229;2230	2226		6	9606
DHAVVVGVYRPPPK	1	1	Unmodified	1532.8463	0.8463469	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		15.27	15.27	3	0.00097163	6891	DP1063-9	99.011	85.294			4.4366	4.1957	NaN	1	0	Median	39065000	7468400	31596000	445	160	425	1065	2231;2232;2233;2234	2232		4	9606
DHQYGLPIK	1	0	Unmodified	1069.5556	0.55564418	497	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					16.656	16.656	2	0.013706	6980	DP1063-6	101.25	58.006			NaN	NaN	NaN	0	0	Median	7432200	0	7432200	446	497	426	1066	2235	2235		1	9606
DHTLVQTIAR	0	1	Unmodified	1152.6251	0.62512073	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				16.267	16.267	2	0.0024599	8006	DP1063-7	138.06	108.59			NaN	NaN	NaN	0	0	Median	57745000	0	57745000	447	381	427	1067	2236;2237	2237		2	9606
DIDAFWLQR	0	1	Unmodified	1162.5771	0.57710791	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					22.824	22.824	2	0.008811	14842	DP1063-6	112.17	72.17			NaN	NaN	NaN	0	0	Median	5381700	0	5381700	448	71	428	1068	2238;2239	2238		2	9606
DIDIHEVR	0	1	Unmodified	995.50361	0.50360861	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				15.858	15.858	2	0.0022178	7422	DP1063-7	126.28	74.942			NaN	NaN	NaN	0	0	Median	53269000	0	53269000	449	330	429	1069	2240;2241	2240		2	9606
DIELILLMLK	1	0	Oxidation (M)	1215.7148	0.71484694	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2	0		1				24.859	24.859	2	0.02012	19416	DP1063-7	103.83	42.923			NaN	NaN	NaN	0	0	Median	8623500	0	8623500	450	418	430	1070	2242;2243	2243	510	2	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	1	0	Unmodified	3263.5066	0.5065879	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.5	1.12	1	1	1	1		22.511	22.511	3	4.584299999999999E-21	14430	DP1063-6	167.67	122.6		+	NaN	NaN	NaN	0	0	Median	119420000	119420000	0	451	19	431	1071;1072;1073;1074	2244;2245;2246;2247;2248;2249;2250;2251	2244		8	9606
DIICQIAYAR	0	1	Unmodified	1221.6176	0.61759251	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		19.995	19.995	2	2.525E-07	13327	DP1063-9	148.38	95.9			11.24	11.758	NaN	1	0	Median	94076000	6160600	87916000	452	214	432	1075	2252;2253;2254;2255	2253		4	9606
DIIHDPGR	0	1	Unmodified	921.46683	0.46682918	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4	0				1		14.739	14.739	2	0.031369	6474	DP1063-9	67.981	26.754			8.2884	8.6699	NaN	1	0	Median	105790000	9985900	95809000	453	298	433	1076	2256;2257;2258	2258		3	9606
DIIVIGNDITYR	0	1	Unmodified	1390.7456	0.7456298	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.06	0.242	15	1				27.023	27.023	2	4.8559E-06	12817	DP1063-6	167.93	92.89			0.96935	0.99314	2.0841	2	0	Median	85047000	41034000	44013000	454	355	434	1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088;1089;1090;1091;1092	2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277	2263		19	9606
DIMEETEEK	1	0	Oxidation (M)	1138.47	0.4699848	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					14.172	14.172	2	0.041722	3847	DP1063-6	90.657	71.414			NaN	NaN	NaN	0	0	Median	3695700	0	3695700	455	73	435	1093	2278	2278		1	9606
DINTDFLLVVLR	0	1	Unmodified	1416.7977	0.79766537	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				26.217	26.217	2	0.0054828	20953	DP1063-7	111.61	46.382			NaN	NaN	NaN	0	0	Median	1914200	0	1914200	456	345	436	1094	2279;2280	2279		2	9606
DIPGLTDTTVPR	0	1	Unmodified	1283.6721	0.67213051	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4.5	0.5				1	1	19.404	19.404	2	0.00088119	12467	DP1063-9	101.97	78.451			8.0309	8.4006	NaN	1	0	Median	106380000	10813000	95568000	457	284	437	1095;1096	2281;2282;2283;2284	2283		4	9606
DISEASVFDAYVLPK	1	0	Unmodified	1652.8298	0.82975336	291	P62854	RPS26	40S ribosomal protein S26	yes	yes	0	0	0	5	0					1	23.226	23.226	2	7.6816E-05	17593	DP1063-10	152.67	152.67			7.417	4.4	NaN	1	0	Median	45031000	6716300	38315000	458	291	438	1097	2285;2286;2287;2288;2289	2286		5	9606
DIVEELSALK	1	0	Unmodified	1115.6074	0.60740498	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			22.406	22.406	2	0.0077533	14334	DP1063-6	121.09	62.31			NaN	NaN	NaN	0	0	Median	47004000	0	47004000	459	211	439	1098;1099;1100	2290;2291;2292;2293;2294	2290		5	9606
DKFEEDRIYR	1	2	Unmodified	1369.6626	0.66262845	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					15.299	15.299	2	7.0355E-07	5223	DP1063-6	132.88	132.88			0.95579	1.1276	NaN	1	0	Median	44753000	21787000	22966000	460	355	440	1101	2295;2296;2297;2298	2295		4	9606
DKFNECGHVLYADIK	2	0	Unmodified	1807.8563	0.85631924	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	2	0		1				17.331	17.331	3	0.0028222	9482	DP1063-7	76.156	46.175			0.98969	1.0213	NaN	1	0	Median	56179000	32362000	23817000	461	236	441	1102	2299	2299		1	9606
DKLFVINEVCEMK	2	0	Oxidation (M)	1639.795	0.79496453	459	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	1	1	4	0				1		18.791	18.791	2	0.044464	11710	DP1063-9	81.525	24.609			NaN	NaN	NaN	0	0	Median	0	0	0	462	459	442	1103	2300	2300		1	9606
DKPHVNVGTIGHVDHGK	2	0	Unmodified	1808.9282	0.92817905	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		13.749	13.749	4	6.0773E-05	4953	DP1063-9	111.11	94.221			1.6507	1.7462	NaN	1	0	Median	13810000	5636800	8173300	463	226	443	1104	2301;2302;2303	2302		3	9606
DKQNIFEFFER	1	1	Unmodified	1471.7096	0.70957864	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				22.172	22.172	3	0.0089276	15967	DP1063-7	91.123	58.19			NaN	NaN	NaN	0	0	Median	7105100	0	7105100	464	338	444	1105	2304;2305	2304		2	9606
DKQPNAQPQYLHGSK	2	0	Unmodified	1709.8485	0.84853174	437	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	1	2	0		1				13.364	13.364	3	0.0051593	4192	DP1063-7	65.511	65.511			0.43669	0.45065	NaN	1	0	Median	6908700	4608100	2300500	465	437	445	1106	2306	2306		1	9606
DLAEWLEK	1	0	Unmodified	1002.5022	0.50221163	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.876	21.876	2	0.013384	13682	DP1063-6	80.438	39.211			0.94787	0.96691	NaN	1	0	Median	21052000	10428000	10624000	466	355	446	1107	2307	2307		1	9606
DLAILQCHGELDPMVPVR	0	1	Oxidation (M)	2078.0289	0.028880648	78	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	1	0	5	0					3	20.42	20.42	2;3	0.00015355	14206	DP1063-10	126.07	87.069			NaN	NaN	NaN	0	0	Median	12476000	0	12476000	467	78	447	1108;1109;1110	2308;2309;2310;2311	2308	70	4	9606
DLAIYYSYGDFLLGK	1	0	Unmodified	1736.8661	0.86613887	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				25.084	25.084	2	0.0022692	19611	DP1063-7	119.39	65.043			NaN	NaN	NaN	0	0	Median	4070900	0	4070900	468	212	448	1111	2312;2313	2312		2	9606
DLAQALINR	0	1	Unmodified	1012.5665	0.56654322	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				19.68	19.68	2	0.0049801	12650	DP1063-7	126.67	53.051			NaN	NaN	NaN	0	0	Median	35797000	0	35797000	469	212	449	1112	2314;2315	2314		2	9606
DLDDALSMCFLFSTFPR	0	1	Oxidation (M)	2049.9176	0.91759886	33	O00541	PES1	Pescadillo homolog	yes	yes	0	1	0	3	0			1			25.95	25.95	2	0.0046029	20495	DP1063-8	111.12	82.14			NaN	NaN	NaN	0	0	Median	3242900	0	3242900	470	33	450	1113	2316;2317;2318	2316	23	3	9606
DLDEEIFDDDDFYHQLLR	0	1	Unmodified	2297.0124	0.012421765	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	2	0		3				24.055	24.055	2;3	8.1123E-24	18404	DP1063-7	198.57	177.75			NaN	NaN	NaN	0	0	Median	13000000	0	13000000	471	543	451	1114;1115;1116	2319;2320;2321;2322;2323	2322		5	9606
DLEGLSQRHEEK	1	1	Unmodified	1439.7005	0.70047052	191	P35579	MYH9	Myosin-9	yes	yes	0	0	1	3	0			1			25.75	25.75	3	0.045439	20411	DP1063-8	63.944	18.291			NaN	NaN	NaN	0	0	Median	2256800	0	2256800	472	191	452	1117	2324	2324		1	9606
DLEKPFLLPVEAVYSVPGR	1	1	Unmodified	2128.1568	0.15684158	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		23.014	23.014	3	8.2078E-05	17233	DP1063-9	124.2	114.47			1.3699	1.2956	NaN	1	0	Median	11854000	5116800	6737600	473	226	453	1118	2325;2326;2327;2328	2327		4	9606
DLENLPATNFSNLVHLVAHLLK	1	0	Unmodified	2457.338	0.33799384	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.5	0.5		2	2			26.69	26.69	3;4	8.0587E-09	21289	DP1063-8	151.63	123.42			NaN	NaN	NaN	0	0	Median	74434000	0	74434000	474	418	454	1119;1120;1121;1122	2329;2330;2331;2332;2333;2334;2335;2336;2337	2335		9	9606
DLGEEHFK	1	0	Unmodified	973.45051	0.45051041	12	CON__P02769			yes	yes	0	0	0	3.2	1.33	1		2	1	1	15.325	15.325	2	0.0059197	6770	DP1063-8	116.9	58.308		+	NaN	NaN	NaN	0	0	Median	5228600000	5228600000	0	475	12	455	1123;1124;1125;1126;1127	2338;2339;2340;2341;2342;2343;2344;2345	2342		8	
DLHDANTDLIGR	0	1	Unmodified	1338.6528	0.65279205	243	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	1	0	1					16.928	16.928	2	3.2569E-06	7307	DP1063-6	172.61	138.43			NaN	NaN	NaN	0	0	Median	8928400	0	8928400	476	243	456	1128	2346;2347	2346		2	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	1	0	2 Oxidation (M)	4299.6572	0.65716542	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	2	0	4	0				1		17.029	17.029	3	5.104900000000001E-25	9293	DP1063-9	133.57	129.53			NaN	NaN	NaN	0	0	Median	33754000	0	33754000	477	205	457	1129	2348;2349;2350;2351	2349	230;231	4	9606
DLIDNSFNR	0	1	Unmodified	1092.52	0.51998696	448	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				18.901	18.901	2	0.043636	11642	DP1063-7	83.265	56.663			NaN	NaN	NaN	0	0	Median	17896000	0	17896000	478	448	458	1130	2352	2352		1	9606
DLLHPSPEEEKRK	2	1	Unmodified	1576.8209	0.82092001	207	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	2	5	0					1	14.018	14.018	3	0.00085271	6154	DP1063-10	122.46	105.99			3.3455	3.2664	NaN	1	0	Median	24215000	5712300	18503000	479	207	459	1131	2353;2354;2355	2355		3	9606
DLLPYGFAIHHAGMTR	0	1	Oxidation (M)	1813.8934	0.89337344	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					18.911	18.911	3	0.0071931	9838	DP1063-6	81.327	50.995			NaN	NaN	NaN	0	0	Median	6616500	0	6616500	480	71	460	1132	2356	2356	59	1	9606
DLMGPSMPSTVSISR	0	1	Oxidation (M)	1592.7538	0.753828	597				yes	yes	0	1	0	2	0		1				26.104	26.104	2	0.024323	20782	DP1063-7	90.149	90.149	+		NaN	NaN	NaN	0	0	Median	487950000	487950000	0	481	597	461	1133	2357	2357	646	1	9606
DLMGPSMPSTVSISR	0	1	2 Oxidation (M)	1608.7487	0.74874262	597				yes	yes	0	2	0	4	0				1		33.353	33.353	2	0.055115	27101	DP1063-9	72.2	14.852	+		NaN	NaN	NaN	0	0	Median	0	0	0	482	597	461	1134	2358	2358	646	1	9606
DLNSGTALFSQSHFIESTK	1	0	Unmodified	2081.0065	0.006548526	595				yes	yes	0	0	0	5	0					1	20.808	20.808	3	0.0076581	14906	DP1063-10	69.069	26.813	+		NaN	NaN	NaN	0	0	Median	31047000	31047000	0	483	595	462	1135	2359	2359		1	9606
DLPEHAVLK	1	0	Unmodified	1020.5604	0.56039521	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				15.74	15.74	2	0.016444	7330	DP1063-7	75.738	34.29			3.5972	3.7067	NaN	1	0	Median	94922000	20157000	74765000	484	330	463	1136	2360	2360		1	9606
DLQMVNISLR	0	1	Oxidation (M)	1203.6282	0.6281572	485	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	0	4	0				1		19.193	19.193	2	0.040759	12317	DP1063-9	90.15	39.544			NaN	NaN	NaN	0	0	Median	5282000	0	5282000	485	485	464	1137	2361	2361		1	9606
DLSAAGIGLLAAATQSLSMPASLGR	0	1	Oxidation (M)	2386.2526	0.25260923	209	P43243	MATR3	Matrin-3	yes	yes	0	1	0	2	0		2				26.482	26.482	2;3	6.887799999999999E-21	21283	DP1063-7	176.17	161.4			2.3868	2.4713	0.79548	2	0	Median	15592000	4827700	10765000	486	209	465	1138;1139	2362;2363;2364;2365;2366;2367;2368;2369;2370	2366	234	9	9606
DLSILSYLSQLQPPMPK	1	0	Oxidation (M)	1945.0231	0.023050213	423	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	1	0	2	0		1				25.824	25.824	2	1.092E-06	20532	DP1063-7	130.1	90.438			NaN	NaN	NaN	0	0	Median	0	0	0	487	423	466	1140	2371	2371	523	1	9606
DLSSSEPVHAK	1	0	Unmodified	1168.5724	0.57241646	460	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	3	1		1		1		13.991	13.991	2	0.0090168	4936	DP1063-7	110.87	51.891			NaN	NaN	NaN	0	0	Median	19697000	0	19697000	488	460	467	1141;1142	2372;2373;2374	2372		3	9606
DLTDYLMK	1	0	Oxidation (M)	1013.4739	0.47394797	252;308	P63261;P60709;Q562R1;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTBL2;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	1	0	4	0				1		19.746	19.746	2	0.030074	12999	DP1063-9	63.48	36.342			0.92159	0.94724	NaN	1	0	Median	33909000	17206000	16703000	489	252;308	468	1143	2375	2375	306	1	9606
DLTTAGAVTQCYR	0	1	Unmodified	1454.6824	0.68237762	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	17.682	17.682	2	0.00011369	10589	DP1063-10	149.33	127.25			10.748	7.7521	NaN	1	0	Median	104960000	9212300	95745000	490	335	469	1144	2376;2377;2378;2379;2380;2381	2378		6	9606
DLYANTVLSGGTTMYPGIADR	0	1	Oxidation (M)	2230.0576	0.057597819	252	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	1	0	4	0				1		21.182	21.182	2	2.4121E-15	14927	DP1063-9	169.15	169.15			0.66742	0.69815	NaN	1	0	Median	30493000	14582000	15911000	491	252	470	1145	2382;2383;2384	2383	307	3	9606
DMAEMQRVWKEK	2	1	Oxidation (M)	1565.733	0.73303298	394	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	1	2	3	0.816		1	1	1		18.408	18.408	2	0.0083825	10890	DP1063-7	117.53	52.179			NaN	NaN	NaN	0	0	Median	1474699999.9999998	1474699999.9999998	0	492	394	471	1146;1147;1148	2385;2386;2387;2388;2389;2390	2386	483	6	9606
DMAGLLKPTACTMLVSSLR	1	1	2 Oxidation (M)	2095.0476	0.047567179	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2	0		2				19.644	19.644	2;3	6.363E-06	12635	DP1063-7	144.17	132.74			0.86521	0.90597	12.977	2	0	Median	277090000	148170000	128910000	493	130	472	1149;1150	2391;2392;2393;2394;2395;2396;2397;2398;2399;2400	2400	152;153	10	9606
DMAGLLKPTACTMLVSSLR	1	1	Oxidation (M)	2079.0527	0.052652557	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		2				20.75	20.75	2;3	2.6861E-05	14160	DP1063-7	120.74	100			0.87901	0.92041	30.005	2	0	Median	81647000	37174000	44474000	494	130	472	1151;1152	2401;2402;2403;2404;2405	2404	152;153	5	9606
DMLLANKVPAAAR	1	1	Oxidation (M)	1384.7497	0.74966932	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	1	1	4	0				1		16.246	16.246	2	0.027487	8299	DP1063-9	99.53	62.466			NaN	NaN	NaN	0	0	Median	4573100	0	4573100	495	98	473	1153	2406	2406	100	1	9606
DMNDTLTSALMGACVTASAMPSR	0	1	3 Oxidation (M)	2447.0437	0.043680368	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	3	0	2	0		1				20.465	20.465	2	1.3943E-08	13768	DP1063-7	137.91	117.1			NaN	NaN	NaN	0	0	Median	22142000	0	22142000	496	418	474	1154	2407;2408	2408	511;512;513	2	9606
DMNDTLTSALMGACVTASAMPSR	0	1	2 Oxidation (M)	2431.0488	0.048765746	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	2	0	2	0		2				21.57	21.57	2	6.5978E-06	15231	DP1063-7	123.92	104.17			NaN	NaN	NaN	0	0	Median	9984300	0	9984300	497	418	474	1155;1156	2409;2410	2409	511;512;513	2	9606
DMPIQAFLLYQEPVLGPVR	0	1	Oxidation (M)	2201.1555	0.15546137	10	CON__P02666			yes	yes	0	1	0	4	0				1		24.521	24.521	2	0.0023463	19014	DP1063-9	112.5	78.451		+	NaN	NaN	NaN	0	0	Median	1814300	1814300	0	498	10	475	1157	2411;2412;2413	2411	4	3	
DMYDQVLK	1	0	Oxidation (M)	1026.4692	0.46919694	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					16.998	16.998	2	0.0098651	7385	DP1063-6	78.77	45.032			0.96817	0.98762	NaN	1	0	Median	124650000	61270000	63378000	499	355;38	476	1158	2414;2415;2416;2417	2417	34	4	9606
DMYDQVLK	1	0	Unmodified	1010.4743	0.47428232	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					18.789	18.789	2	0.019594	9683	DP1063-6	76.035	36.388			0.90345	0.9216	NaN	1	0	Median	40652000	22639000	18013000	500	355;38	476	1159	2418;2419	2419		2	9606
DNIQGITK	1	0	Unmodified	887.47125	0.47124585	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	14.818	14.818	2	0.021043	7144	DP1063-10	75.043	35.397			2.9638	1.7582	NaN	1	0	Median	29684000	7612900	22071000	501	285	477	1160	2420	2420		1	9606
DNIQGITKPAIR	1	1	Unmodified	1324.7463	0.7462985	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					3	16.276	16.276	2;3	2.4868E-10	8621	DP1063-10	182.16	142.28			2.9761	2.937	1.7949	2	0	Median	1002399999.9999999	233300000	769090000	502	285	478	1161;1162;1163	2421;2422;2423;2424;2425;2426;2427;2428;2429	2428		8	9606
DNQLSEVANK	1	0	Unmodified	1116.5411	0.54111633	387	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2	0		1				15.383	15.383	2	0.01919	6808	DP1063-7	95.358	71.93			NaN	NaN	NaN	0	0	Median	21403000	0	21403000	503	387	479	1164	2430	2430		1	9606
DNTCVVEFQFMLPTSHPNR	0	1	Oxidation (M)	2307.0412	0.041236248	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	3					20.997	20.997	2;3	2.0792E-62	12508	DP1063-6	253.06	218.16			0.85655	0.88258	2.9387	2	0	Median	125500000	68032000	57467000	504	355	480	1165;1166;1167	2431;2432;2433;2434;2435;2436;2437;2438	2436	414	8	9606
DNTQLLINQLWQLPTER	0	1	Unmodified	2081.0906	0.090552927	392	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		25.116	25.116	2	1.5054E-23	19716	DP1063-9	198.48	129.65			NaN	NaN	NaN	0	0	Median	1688900	0	1688900	505	392	481	1168	2439;2440;2441	2439		3	9606
DPAQPMSPGEATQSGAR	0	1	Oxidation (M)	1714.7581	0.75806175	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				14.239	14.239	2	0.0029823	5211	DP1063-7	118.76	95.879			NaN	NaN	NaN	0	0	Median	10718000	0	10718000	506	493	482	1169	2442;2443	2442	572	2	9606
DPSDYVRAMREMNGK	1	2	2 Oxidation (M)	1799.7931	0.79306705	498	Q9BTD8	RBM42	RNA-binding protein 42	yes	yes	0	2	2	5	0					1	28.55	28.55	2	0.018277	23142	DP1063-10	79.659	44.136			NaN	NaN	NaN	0	0	Median	0	0	0	507	498	483	1170	2444	2444	579;580	1	9606
DPSLPLLELQDIMTSVSGR	0	1	Oxidation (M)	2086.0616	0.061620564	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.25	0.433	3	1				24.746	24.746	2;3	1.0613E-18	16822	DP1063-6	186.29	186.29			0.83014	0.85184	5.3793	3	0	Median	74550000	39094000	35457000	508	355	484	1171;1172;1173;1174	2445;2446;2447;2448;2449;2450;2451;2452;2453;2454;2455;2456;2457	2448	415	13	9606
DPSLPLLELQDIMTSVSGR	0	1	Unmodified	2070.0667	0.066705942	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					27.522	27.522	2	0.00063427	19965	DP1063-6	106.52	69.543			NaN	NaN	NaN	0	0	Median	0	0	0	509	355	484	1175;1176	2458;2459	2459		2	9606
DPTPSFYDLWAQEDPNAVLGR	0	1	Unmodified	2390.1179	0.11788989	376	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		2				24.783	24.783	2	2.4407E-07	19271	DP1063-7	141.85	112.87			NaN	NaN	NaN	0	0	Median	5116500	0	5116500	510	376	485	1177;1178	2460;2461;2462	2461		3	9606
DPVLAPAVGADLLDYCLAR	0	1	Unmodified	2028.035	0.035011883	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					24.168	24.168	2	1.2632E-06	16405	DP1063-6	147.68	116.85			NaN	NaN	NaN	0	0	Median	6152500	0	6152500	511	57	486	1179	2463;2464	2464		2	9606
DQVANSAFVER	0	1	Unmodified	1234.5942	0.59421454	110	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				16.65	16.65	2	0.013816	8498	DP1063-7	103.26	38.544			NaN	NaN	NaN	0	0	Median	15804000	15804000	0	512	110	487	1180	2465;2466	2465		2	9606
DQWFKCDDAIITKASIK	3	0	Unmodified	2038.0194	0.019361819	563	Q9UPT9	USP22	Ubiquitin carboxyl-terminal hydrolase 22	yes	yes	0	0	2	5	0					1	21.544	21.544	2	2.842E-05	15651	DP1063-10	123.67	8.9071			NaN	NaN	NaN	0	0	Median	0	0	0	513	563	488	1181	2467	2467		1	9606
DRPFFPGLVK	1	1	Unmodified	1174.6499	0.64987892	58	O60361;P22392	NME2P1;NME2	Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase B	yes	no	0	0	1	5	0					1	19.388	19.388	2	0.0044007	12897	DP1063-10	92.838	52.78			0.95928	0.9467	NaN	1	0	Median	7082200	3398600	3683600	514	58	489	1182	2468;2469	2468		2	9606
DSAQTSVTQAQR	0	1	Unmodified	1290.6164	0.61640654	388	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					13.506	13.506	2	0.00047009	3047	DP1063-6	142.98	83.829			NaN	NaN	NaN	0	0	Median	2158700	0	2158700	515	388	490	1183	2470;2471	2471		2	9606
DSDENLTDAEGK	1	0	Unmodified	1292.5368	0.53681882	428	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				15.034	15.034	2	0.0054234	6392	DP1063-7	112.13	54.54			NaN	NaN	NaN	0	0	Median	6960200	0	6960200	516	428	491	1184	2472;2473	2473		2	9606
DSEEIDDVTR	0	1	Unmodified	1177.5099	0.50987578	573	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		16.2	16.2	2	0.0014748	8270	DP1063-9	141.48	92.919			NaN	NaN	NaN	0	0	Median	9736200	0	9736200	517	573	492	1185	2474;2475	2475		2	9606
DSQVVQVVLDGLK	1	0	Unmodified	1398.7718	0.77184455	32	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	3	0			1			22.844	22.844	2	0.00010361	16801	DP1063-8	149.94	107.08			NaN	NaN	NaN	0	0	Median	10030000	0	10030000	518	32	493	1186	2476;2477	2477		2	9606
DSVAQGTTNVHSSEHAGR	0	1	Unmodified	1851.846	0.84596556	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				12.761	12.761	3	0.00017553	3346	DP1063-7	131.56	102.83			NaN	NaN	NaN	0	0	Median	6591500	0	6591500	519	211	494	1187	2478;2479	2478		2	9606
DSYVGDEAQSK	1	0	Unmodified	1197.515	0.51496116	252;308	P63261;P60709;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	4	0				1		14.346	14.346	2	1.7246E-05	5733	DP1063-9	140.83	130.12			0.81978	0.84259	NaN	1	0	Median	26284000	14530000	11753000	520	252;308	495	1188	2480;2481;2482;2483	2482		4	9606
DSYVGDEAQSKR	1	1	Unmodified	1353.6161	0.61607219	252;308	P63261;P60709;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	4	0				1		13.574	13.574	2	3.1675E-15	4709	DP1063-9	183.67	183.67			1.0522	0.99505	NaN	1	0	Median	12775000	5815700	6959000	521	252;308	496	1189	2484;2485;2486;2487;2488	2486		5	9606
DTAASGYGTQNIR	0	1	Unmodified	1352.6321	0.6320566	572	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		15.569	15.569	2	0.0075538	7337	DP1063-9	105.4	77.315			NaN	NaN	NaN	0	0	Median	9407800	0	9407800	522	572	497	1190	2489	2489		1	9606
DTGKTPVEPEVAIHR	1	1	Unmodified	1647.858	0.8580338	253	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	1	5	0					1	15.349	15.349	3	0.00041349	7682	DP1063-10	127.71	72.499			NaN	NaN	NaN	0	0	Median	10914000	0	10914000	523	253	498	1191	2490;2491	2490		2	9606
DTGNFVIGQILSDQSR	0	1	Unmodified	1748.8693	0.86932676	120	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	1	0	1					22.794	22.794	2	0.0025743	14872	DP1063-6	116.51	48.992			NaN	NaN	NaN	0	0	Median	2523300	0	2523300	524	120	499	1192	2492;2493	2493		2	9606
DTLTISGTPEVTCVVVDVGHDDPEVK	1	0	Unmodified	2781.3379	0.337855	6	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3	0			1			21.149	21.149	3	8.6571E-07	14694	DP1063-8	115.88	95.38		+	NaN	NaN	NaN	0	0	Median	31875000	31875000	0	525	6	500	1193	2494;2495	2494		2	
DTLYEAVR	0	1	Unmodified	965.48181	0.48181054	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	17.236	17.236	2	0.0074165	10003	DP1063-10	87.754	25.04			10.178	7.3407	NaN	1	0	Median	193440000	16568000	176870000	526	295	501	1194	2496;2497	2497		2	9606
DTSFEQHVLWHTGGK	1	0	Unmodified	1740.822	0.82198264	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					17.848	17.848	3	0.011201	8487	DP1063-6	61.657	61.657			1.3578	1.385	NaN	1	0	Median	13461000	6579500	6881400	527	224	502	1195	2498;2499;2500	2500		3	9606
DTSYLFITGPDVVK	1	0	Unmodified	1553.7977	0.79772495	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		22.208	22.208	2	8.1125E-16	15999	DP1063-8	192.44	192.44			0.92616	0.94231	3.0377	2	0	Median	235450000	121410000	114040000	528	95	503	1196;1197	2501;2502;2503;2504;2505;2506;2507;2508	2503		8	9606
DVDDGLQAAEEVGYPVMIK	1	0	Oxidation (M)	2063.9721	0.97213685	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	1.22	2	1		1		21.579	21.579	2;3	5.6072E-08	13104	DP1063-6	156.6	156.6			0.7629	0.77823	27.61	2	0	Median	251160000	130440000	120720000	529	355	504	1198;1199;1200;1201	2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519	2509	416	11	9606
DVDDGLQAAEEVGYPVMIK	1	0	Unmodified	2047.9772	0.97722223	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.602	22.602	2	1.0294E-12	14607	DP1063-6	179.39	179.39			1.0936	1.1156	NaN	1	0	Median	21371000	9864400	11506000	530	355	504	1202	2520;2521;2522	2521		3	9606
DVDEGLEAAER	0	1	Unmodified	1202.5415	0.54151026	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.012	17.012	2	0.00029831	7404	DP1063-6	103.26	72.685			0.27704	0.28988	NaN	1	0	Median	11395000	8347000	3048200	531	38	505	1203	2523;2524	2524		2	9606
DVESVQTPSK	1	0	Unmodified	1088.535	0.53496832	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.328	14.328	2	0.014803	5336	DP1063-7	101.46	58.336			NaN	NaN	NaN	0	0	Median	21396000	0	21396000	532	211	506	1204	2525	2525		1	9606
DVFRDPALKR	1	2	Unmodified	1215.6724	0.67240528	258	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	15.497	15.497	3	0.0059236	7934	DP1063-10	82.261	43.485			10.748	12.419	NaN	1	0	Median	69434000	5308100	64126000	533	258	507	1205	2526;2527	2526		2	9606
DVLSVAFSSDNR	0	1	Unmodified	1308.631	0.63099397	305	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		20.503	20.503	2	0.00099067	14054	DP1063-9	104.42	93.558			2.0841	2.18	NaN	1	0	Median	13872000	4650700	9221700	534	305	508	1206	2528	2528		1	9606
DVLSYHIPFLVSSIEDFKDHIPR	1	1	Unmodified	2726.4068	0.40680169	567	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	1	2	0		1				23.918	23.918	4	0.0072297	18133	DP1063-7	55.972	32.84			0.4748	0.49716	NaN	1	0	Median	9228500	5646800	3581600	535	567	509	1207	2529	2529		0	9606
DVNAAIATIK	1	0	Unmodified	1014.571	0.5709599	310;434;492	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	4	0.816			1	1	1	18.065	18.065	2	0.00033368	11159	DP1063-10	96.665	56.664			3.2471	3.2704	56.733	3	0	Plateau	503970000	122290000	381680000	536	310;434;492	510	1208;1209;1210	2530;2531;2532;2533;2534;2535;2536;2537;2538;2539	2530		10	9606
DVNVVVVEGGPK	1	0	Unmodified	1210.6558	0.65575216	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	2	0		1				17.726	17.726	2	0.032214	9983	DP1063-7	82.171	41.289			NaN	NaN	NaN	0	0	Median	10672000	0	10672000	537	54	511	1211	2540	2540		1	9606
DVQIGDIVTVGECR	0	1	Unmodified	1559.7614	0.76135622	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	20.858	20.858	2	0.0032088	14798	DP1063-10	114.82	57.325			NaN	NaN	NaN	0	0	Median	6081500	0	6081500	538	275	512	1212	2541;2542	2541		2	9606
DVQIGDIVTVGECRPLSK	1	1	Unmodified	1985.0252	0.025175478	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					2	20.082	20.082	2;3	5.0073E-36	13759	DP1063-10	222.75	196.63			5.424	5.3528	7.4675	2	0	Median	189860000	29379000	160480000	539	275	513	1213;1214	2543;2544;2545;2546;2547;2548;2549	2544		7	9606
DVTEAEQAEEQAR	0	1	Unmodified	1474.6536	0.65357991	348	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					15.807	15.807	2	2.8108E-10	5929	DP1063-6	182.46	120.81			NaN	NaN	NaN	0	0	Median	4476000	0	4476000	540	348	514	1215	2550;2551	2551		2	9606
DWVLNEFK	1	0	Unmodified	1049.5182	0.51819605	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			21.717	21.717	2	0.052206	15440	DP1063-8	84.743	37.749			NaN	NaN	NaN	0	0	Median	11730000	0	11730000	541	148	515	1216	2552	2552		1	9606
DYDDMSPR	0	1	Oxidation (M)	1013.376	0.37602484	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	3	0			1			13.804	13.804	2	0.0036609	5096	DP1063-8	89.752	67.621			3.5442	3.6724	NaN	1	0	Median	8681400	2416200	6265200	542	262	516	1217	2553;2554	2553	321	2	9606
DYHFKVDNDENEHQLSLR	1	1	Unmodified	2258.0352	0.035222893	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		16.991	16.991	4	1.8114E-05	9202	DP1063-9	138.66	114.07			NaN	NaN	NaN	0	0	Median	36600000	0	36600000	543	105	517	1218	2555;2556	2555		2	9606
DYLHLPPEIVPATLR	0	1	Unmodified	1732.9512	0.9512059	219	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					2	21.873	21.873	2;3	0.0014733	16084	DP1063-10	91.076	72.897			2.1802	1.5725	19.753	2	0	Median	24775000	8374200	16401000	544	219	518	1219;1220	2557;2558;2559;2560;2561;2562;2563;2564	2561		8	9606
DYLHYIR	0	1	Unmodified	978.49232	0.49231565	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	17.777	17.777	2	0.025626	10749	DP1063-10	101.21	64.118			NaN	NaN	NaN	0	0	Median	99748000	0	99748000	545	275	519	1221	2565	2565		1	9606
DYQELMNTK	1	0	Oxidation (M)	1156.507	0.50703901	88;26	CON__Q3TTY5;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	0	2	1	1		1			15.401	15.401	2	0.0096319	5369	DP1063-6	120.87	76.519		+	NaN	NaN	NaN	0	0	Median	58890000	58890000	0	546	26;88	520	1222;1223	2566;2567;2568	2566	20	3	9606
DYTEGWVEFR	0	1	Unmodified	1300.5724	0.57241646	558	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		21.585	21.585	2	0.012147	15396	DP1063-9	106.6	52.191			NaN	NaN	NaN	0	0	Median	4306700	0	4306700	547	558	521	1224	2569;2570	2569		2	9606
EAAENHPLLQAIR	0	1	Unmodified	1460.7736	0.77357588	596				yes	yes	0	0	0	1	0	1					16.41	16.41	3	0.0024682	6689	DP1063-6	77.597	48.526	+		0.72325	0.74072	NaN	1	0	Median	65225000	41013000	24212000	548	596	522	1225	2571;2572	2572		2	9606
EAAGTTAAAGTGGATEQPPR	0	1	Unmodified	1812.8602	0.86021864	52	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				14.329	14.329	2	1.9557E-17	5417	DP1063-7	170.56	132.32			NaN	NaN	NaN	0	0	Median	7116800	0	7116800	549	52	523	1226	2573;2574	2574		2	9606
EAAWAISNLTISGR	0	1	Unmodified	1487.7732	0.77324153	37;32	O00629;O00505	KPNA4;KPNA3	Importin subunit alpha-3;Importin subunit alpha-4	no	no	0	0	0	3	0			1			21.138	21.138	2	0.0069871	14702	DP1063-8	103.21	70.214			NaN	NaN	NaN	0	0	Median	13603000	0	13603000	550	37;32	524	1227	2575	2575		1	9606
EAEAKMMVANKPDK	3	0	2 Oxidation (M)	1592.7538	0.753828	60	O60749	SNX2	Sorting nexin-2	yes	yes	0	2	2	3	0			1			26.106	26.106	2	0.029527	32271	DP1063-8	66.92	8.3282			NaN	NaN	NaN	0	0	Median	1992099999.9999998	1992099999.9999998	0	551	60	525	1228	2576;2577	2577	51;52	2	9606
EAEEVMDAGCQESAGPER	0	1	Oxidation (M)	1979.7837	0.78368416	484	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	1	0	2	0		1				14.876	14.876	2	6.5648E-12	6146	DP1063-7	166.38	127.42			NaN	NaN	NaN	0	0	Median	0	0	0	552	484	526	1229	2578	2578	565	1	9606
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	1	0	Unmodified	3310.5268	0.52681154	414	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	0	3	0			1			21.678	21.678	3	5.3333E-29	15344	DP1063-8	158.74	0			2.7656	2.7854	NaN	1	0	Median	68811000	15838000	52973000	553	414	527	1230	2579;2580	2579		2	9606
EAFAGDDVIRDFLK	1	1	Unmodified	1594.7991	0.79912193	504	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	1	2	0		1				22.231	22.231	3	0.0053675	16057	DP1063-7	92.151	64.098			NaN	NaN	NaN	0	0	Median	5242300	0	5242300	554	504	528	1231	2581;2582	2581		2	9606
EAGEDEEGFLSKLK	2	0	Unmodified	1550.7464	0.74641766	473	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	1	3	0			1			14.889	14.889	4	0.0091531	6668	DP1063-8	77.185	25.459			NaN	NaN	NaN	0	0	Median	4173600	4173600	0	555	473	529	1232	2583;2584	2584		2	9606
EAGEQGDIEPR	0	1	Unmodified	1199.5418	0.54184461	362	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			1			14.219	14.219	2	0.00034192	5734	DP1063-8	107.79	81.98			1.359	1.4081	NaN	1	0	Median	11958000	4933900	7024100	556	362	530	1233	2585;2586	2586		2	9606
EAGGNMSIQFLGTVYK	1	0	Oxidation (M)	1729.8345	0.83452116	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.33	1.25		1	1		1	20.32	20.32	2	1.826E-16	13524	DP1063-7	188.15	188.15			1.0809	1.1138	27.148	3	0	Plateau	220560000	109020000	111540000	557	94	531	1234;1235;1236	2587;2588;2589;2590;2591;2592	2589	84	6	9606
EAGGNMSIQFLGTVYK	1	0	Unmodified	1713.8396	0.83960654	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0		1				21.517	21.517	2	2.2406E-05	15160	DP1063-7	142.91	96.113			NaN	NaN	NaN	0	0	Median	19973000	0	19973000	558	94	531	1237	2593;2594	2593		2	9606
EAHEPLAVADAK	1	0	Unmodified	1249.6303	0.63026569	571	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			14.612	14.612	2	3.882E-06	6298	DP1063-8	166.86	106.84			NaN	NaN	NaN	0	0	Median	7254800	0	7254800	559	571	532	1238	2595;2596	2595		2	9606
EAIEGTYIDKK	2	0	Unmodified	1265.6503	0.65033243	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					2	15.093	15.093	2;3	0.0002325	7431	DP1063-10	100.48	49.41			7.5499	7.6943	7.1474	2	0	Median	98443000	13789000	84654000	560	275	533	1239;1240	2597;2598;2599;2600;2601	2599		5	9606
EAMEDGEIDGNK	1	0	Oxidation (M)	1322.5296	0.52962495	155	P19338	NCL	Nucleolin	yes	yes	0	1	0	2.5	0.5		1	1			13.564	13.564	2	0.0007508	4853	DP1063-8	142	98.36			NaN	NaN	NaN	0	0	Median	36429000	0	36429000	561	155	534	1241;1242	2602;2603;2604;2605	2605	183	4	9606
EAMEDGEIDGNKVTLDWAKPK	3	0	Oxidation (M)	2361.1158	0.11584098	155	P19338	NCL	Nucleolin	yes	yes	0	1	2	2	0		1				18.012	18.012	4	0.011789	10387	DP1063-7	67.43	54.532			NaN	NaN	NaN	0	0	Median	52893000	0	52893000	562	155	535	1243	2606;2607;2608	2608	183	3	9606
EAMVQAEEAAAEITR	0	1	Oxidation (M)	1633.7618	0.76175015	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	3	0			1			17.957	17.957	2	0.0018703	10457	DP1063-8	126.34	79.938			NaN	NaN	NaN	0	0	Median	32127000	0	32127000	563	35	536	1244	2609;2610	2609	25	2	9606
EANHNVSAPYGR	0	1	Unmodified	1313.6113	0.61126158	437;474	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				13.481	13.481	3	0.029043	4278	DP1063-7	54.772	32.131			0.55044	0.57106	NaN	1	0	Median	16543000	9262300	7280300	564	437;474	537	1245	2611;2612;2613	2611		3	9606
EANNFLWPFK	1	0	Unmodified	1264.6241	0.6240581	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		23.077	23.077	2	0.017107	17211	DP1063-9	86.833	86.833			10.351	10.639	NaN	1	0	Median	33080000	2611400	30468000	565	152	538	1246	2614;2615	2615		2	9606
EAPAQPAPEK	1	0	Unmodified	1036.5189	0.51892433	404	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	3	0			2			12.701	12.701	2	0.042949	3863	DP1063-8	91.265	48.142			NaN	NaN	NaN	0	0	Median	0	0	0	566	404	539	1247;1248	2616;2617	2617		2	9606
EAPPMEKPEVVK	2	0	Oxidation (M)	1368.6959	0.69590241	288	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	5	0					1	13.7	13.7	3	0.0018333	5691	DP1063-10	72.34	46.222			4.2977	4.38	NaN	1	0	Median	29819000	7125100	22693000	567	288	540	1249	2618;2619;2620	2619	343	3	9606
EAQELSQNSAIK	1	0	Unmodified	1316.6572	0.65720872	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2.5	0.5		1	1			14.894	14.894	2	8.6275E-23	6161	DP1063-7	207.83	207.83			6.2221	6.4114	NaN	1	0	Median	49636000	4594800	45041000	568	531	541	1250;1251	2621;2622;2623;2624;2625	2623		5	9606
EASFEYLQNEGER	0	1	Unmodified	1570.69	0.68996541	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.12	0.331	7	1				26.746	26.746	2	3.2627E-32	10865	DP1063-7	224.75	203.29			1.0894	1.1131	2.5764	2	0	Median	110010000	53448000	56561000	569	355;38	542	1252;1253;1254;1255;1256;1257;1258;1259	2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638	2635		13	9606
EATAGNPGGQTVR	0	1	Unmodified	1256.6109	0.61092723	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					13.175	13.175	2	0.0013788	2692	DP1063-6	108.47	78.803			2.3832	2.4915	NaN	1	0	Median	6093600	1563500	4530100	570	179	543	1260	2639;2640;2641;2642	2641		4	9606
EAVGDLLDAFK	1	0	Unmodified	1176.6027	0.60265396	339	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2.43	1.5	3	1	1	1	1	23.482	23.482	1;2	1.3183E-05	15747	DP1063-6	134.26	101.85			0.90924	1.0074	26.867	6	0	Plateau	254800000	126400000	128400000	571	339	544	1261;1262;1263;1264;1265;1266;1267	2643;2644;2645;2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660	2649		17	9606
EAVSSAFFSLLQTLSTQFK	1	0	Unmodified	2103.0888	0.088821592	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				28.072	28.072	2	1.4731E-28	23006	DP1063-7	206.45	174.79			NaN	NaN	NaN	0	0	Median	2572600	0	2572600	572	493	545	1268	2661;2662	2661		2	9606
EAVVNTQELLDLLVK	1	0	Unmodified	1682.9455	0.94545182	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					24.885	24.885	2	0.0036731	17240	DP1063-6	110.66	73.062			NaN	NaN	NaN	0	0	Median	1121900	0	1121900	573	431	546	1269	2663;2664	2663		2	9606
EAYPGDVFYLHSR	0	1	Unmodified	1552.731	0.73104237	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.977	18.977	3	0.00013842	11841	DP1063-8	142.12	122.01			0.78009	0.80831	NaN	1	0	Median	41529000	22764000	18765000	574	170	547	1270	2665;2666;2667	2665		3	9606
ECCDKPLLEK	2	0	Unmodified	1290.5948	0.59480816	12	CON__P02769			yes	yes	0	0	1	1.75	0.829	2	1	1			14.274	14.274	2;3	0.00040911	5716	DP1063-8	202.2	92.913		+	NaN	NaN	NaN	0	0	Median	111940000	111940000	0	575	12	548	1271;1272;1273;1274	2668;2669;2670;2671;2672;2673;2674	2674		7	
ECCHGDLLECADDR	0	1	Unmodified	1748.6553	0.65525294	12	CON__P02769			yes	yes	0	0	0	2.25	0.829	1	1	2			16.18	16.18	2;3	2.3771E-42	8238	DP1063-8	272.1	256.73		+	NaN	NaN	NaN	0	0	Median	292780000	292780000	0	576	12	549	1275;1276;1277;1278	2675;2676;2677;2678;2679;2680;2681;2682	2679		8	
ECCHGDLLECADDRADLAK	1	1	Unmodified	2246.9355	0.93545055	12	CON__P02769			yes	yes	0	0	1	2.2	0.98	3	3	3	1		16.961	16.961	2;3;4	2.9348E-116	9289	DP1063-8	337.22	317.94		+	NaN	NaN	NaN	0	0	Median	1495399999.9999998	1495399999.9999998	0	577	12	550	1279;1280;1281;1282;1283;1284;1285;1286;1287;1288	2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701;2702;2703	2700		21	
ECCQPVLVYIPPQAELR	0	1	Unmodified	2071.0231	0.023066988	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.22	2	1		1		21.336	21.336	2;3	4.7276E-26	12942	DP1063-6	243.3	243.3			0.60844	0.61661	10.293	2	0	Median	382510000	250850000	131660000	578	355	551	1289;1290;1291;1292	2704;2705;2706;2707;2708;2709;2710;2711;2712;2713	2704		10	9606
ECFVCTACR	0	1	Unmodified	1201.4678	0.46783351	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		15.97	15.97	2	0.00085307	7936	DP1063-9	98.629	77.682			0.79355	0.83008	NaN	1	0	Median	11856000	5604400	6251900	579	377	552	1293	2714;2715	2715		2	9606
ECLPLIIFLR	0	1	Unmodified	1272.7264	0.72641468	281	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		24.692	24.692	2	0.00026663	19179	DP1063-9	113.5	113.5			5.1381	5.3746	NaN	1	0	Median	17094000	3064500	14030000	580	281	553	1294	2716;2717;2718;2719	2719		4	9606
ECPSDECGAGVFMASHFDR	0	1	Oxidation (M)	2186.8456	0.84557291	300	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	1	0	5	0					2	17.792	17.792	2;3	4.5235E-06	10786	DP1063-10	145.82	145.82			8.2593	5.9571	NaN	1	0	Median	65824000	9418200	56406000	581	300	554	1295;1296	2720;2721;2722;2723;2724;2725	2720	358	6	9606
ECPSDECGAGVFMASHFDR	0	1	Unmodified	2170.8507	0.85065829	300	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	0	0	5	0					1	19.17	19.17	3	6.8464E-17	12604	DP1063-10	182.31	174.09			NaN	NaN	NaN	0	0	Median	11738000	0	11738000	582	300	554	1297	2726;2727	2727		2	9606
EDDVGTGAGLLEIK	1	0	Unmodified	1415.7144	0.71438925	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	4	0				1		15.345	15.345	3	0.048709	6951	DP1063-9	61.212	7.207			NaN	NaN	NaN	0	0	Median	149050000	149050000	0	583	225	555	1298	2728	2728		1	9606
EDGLAQQQTQLNLR	0	1	Unmodified	1612.8169	0.81689726	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	3					17.717	17.717	2	0.0013808	8281	DP1063-6	128.51	93.711			NaN	NaN	NaN	0	0	Median	7257900	0	7257900	584	224	556	1299;1300;1301	2729;2730;2731	2729		3	9606
EDGNEEDKENQGDETQGQQPPQR	1	1	Unmodified	2627.0968	0.096773109	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	3.5	0.5			1	1		13.22	13.22	2;3	2.5806999999999996E-40	4494	DP1063-8	201.48	183.26			NaN	NaN	NaN	0	0	Median	10401000	0	10401000	585	306	557	1302;1303	2732;2733;2734	2733		3	9606
EDGNEEDKENQGDETQGQQPPQRR	1	2	Unmodified	2783.1979	0.19788414	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	2	4	0				2		12.775	12.775	3;4	2.8475E-10	3788	DP1063-9	123.55	123.55			6.1392	7.158	NaN	1	0	Median	28523000	4218100	24304000	586	306	558	1304;1305	2735;2736;2737;2738;2739	2736		5	9606
EDITQSAQHALR	0	1	Unmodified	1367.6793	0.67934115	351	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				16.063	16.063	2	0.01889	7758	DP1063-7	93.667	50.864			NaN	NaN	NaN	0	0	Median	8304600	0	8304600	587	351	559	1306	2740;2741	2740		2	9606
EDLTEIRDMLLANK	1	1	Oxidation (M)	1675.8451	0.84508585	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	1	1	4	0				1		20.54	20.54	3	0.021581	14120	DP1063-9	91.313	52.64			NaN	NaN	NaN	0	0	Median	14170000	0	14170000	588	98	560	1307	2742;2743	2743	100	2	9606
EDQLLCTDCYSNEYSSK	1	0	Unmodified	2110.846	0.84595006	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		18.625	18.625	2	0.0038355	11485	DP1063-9	96.734	83.597			NaN	NaN	NaN	0	0	Median	0	0	0	589	377	561	1308	2744	2744		1	9606
EDSQRPGAHLTVK	1	1	Unmodified	1436.7372	0.73719038	118	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		13.222	13.222	3	0.0010414	4279	DP1063-9	88.101	88.101			6.6292	6.2692	NaN	1	0	Median	57769000	7131200	50638000	590	118	562	1309	2745;2746;2747	2746		3	9606
EDSTADDSKDSVAQGTTNVHSSEHAGR	1	1	Unmodified	2800.2132	0.21319985	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.707	1	2	1			13.378	13.378	4;5	1.5399E-15	4167	DP1063-7	149.41	133.35			NaN	NaN	NaN	0	0	Median	28364000	0	28364000	591	211	563	1310;1311;1312;1313	2748;2749;2750;2751;2752;2753;2754;2755;2756	2750		9	9606
EDSVKPGAHLTVK	2	0	Unmodified	1379.7409	0.74087877	235	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		13.712	13.712	3	0.013224	4918	DP1063-9	61.03	61.03			3.1336	3.3149	NaN	1	0	Median	15614000	3542400	12072000	592	235	564	1314	2757;2758	2758		2	9606
EEAISNMVVALK	1	0	Oxidation (M)	1318.6803	0.68025235	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					17.796	17.796	2	5.8968E-05	8378	DP1063-6	135.86	73.277			1.0048	1.0249	NaN	1	0	Median	278990000	136810000	142180000	593	355;38	565	1315	2759;2760;2761	2760	35	3	9606
EEAISNMVVALK	1	0	Unmodified	1302.6853	0.68533773	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					20.198	20.198	2	7.8433E-07	11517	DP1063-6	163.64	138.02			0.94352	0.96248	NaN	1	0	Median	86378000	44966000	41411000	594	355;38	565	1316	2762;2763;2764;2765	2764		4	9606
EEAQALEDLTGFK	1	0	Unmodified	1449.6987	0.69873919	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				20.995	20.995	2	8.1506E-05	14501	DP1063-7	151.15	88.324			NaN	NaN	NaN	0	0	Median	23444000	0	23444000	595	211	566	1317	2766	2766		1	9606
EEAQSLEDLAGFK	1	0	Unmodified	1435.6831	0.68308912	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1.33	0.471	2	1				20.557	20.557	2	0.00018936	13872	DP1063-7	145.28	101.83			NaN	NaN	NaN	0	0	Median	31396000	0	31396000	596	211	567	1318;1319;1320	2767;2768;2769;2770	2770		4	9606
EEASGSSVTAEEAK	1	0	Unmodified	1393.6209	0.6208828	136	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	2	0		1				13.561	13.561	2	0.005661	4417	DP1063-7	77.674	56.974			1.9324	1.9912	NaN	1	0	Median	6428600	2162000	4266600	597	136	568	1321	2771	2771		1	9606
EEEMGEEEEVER	0	1	Oxidation (M)	1509.5777	0.57769735	385	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	1	0	1	0	1					14.247	14.247	2	0.036557	3981	DP1063-6	88.681	61.709			NaN	NaN	NaN	0	0	Median	1642900	0	1642900	598	385	569	1322	2772	2772		1	9606
EEFLIPIYHQVAVQFADLHDTPGR	0	1	Unmodified	2794.4079	0.40786432	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.67	1.25	2		2	2		23.05	23.05	3;4	5.5980999999999996E-21	15115	DP1063-6	171.83	171.83			0.81186	0.83723	8.6269	6	0	Median	179820000	103830000	75982000	599	355	570	1323;1324;1325;1326;1327;1328	2773;2774;2775;2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786;2787	2775		15	9606
EEGIGPENLR	0	1	Unmodified	1112.5462	0.54620171	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.876	16.876	2	1.9134E-07	7151	DP1063-6	145.72	112.46			0.88032	0.89261	NaN	1	0	Median	147230000	74150000	73077000	600	355	571	1329	2788;2789;2790;2791	2791		4	9606
EEGVLTLWR	0	1	Unmodified	1101.5819	0.58185893	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		21.362	21.362	2	0.00098364	15154	DP1063-9	103.83	54.736			2.7878	2.9161	NaN	1	0	Median	6496800	2009900	4486900	601	337	572	1330	2792;2793;2794	2792		3	9606
EEIQETQTPTHSR	0	1	Unmodified	1554.7274	0.72741355	508	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	4	0				1		13.277	13.277	3	0.0014666	4347	DP1063-9	117.93	89.65			NaN	NaN	NaN	0	0	Median	5367300	0	5367300	602	508	573	1331	2795;2796	2796		2	9606
EELEALFLPYDLK	1	0	Unmodified	1578.8181	0.81812604	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				24.142	24.142	2	0.0016385	18485	DP1063-7	131.42	94.747			NaN	NaN	NaN	0	0	Median	4822600	0	4822600	603	514	574	1332	2797;2798	2797		2	9606
EELSNVLAAMR	0	1	Unmodified	1231.6231	0.62307182	580	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	5	0					1	21.084	21.084	2	9.1983E-18	15110	DP1063-10	229.55	132.88			NaN	NaN	NaN	0	0	Median	9946000	0	9946000	604	580	575	1333	2799;2800	2800		2	9606
EELSNVLAAMR	0	1	Oxidation (M)	1247.618	0.61798644	580	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	0	5	0					2	18.232	18.232	2	0.029214	11381	DP1063-10	88.948	32.138			NaN	NaN	NaN	0	0	Median	0	0	0	605	580	575	1334;1335	2801;2802	2802	631	2	9606
EENKSDMNTVLNYIFSHAQVTK	2	0	Oxidation (M)	2583.2275	0.22751669	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.33	0.471	2	1				21.317	21.317	3;4	1.7334E-115	12946	DP1063-6	289.43	194.59			0.95128	0.96794	6.929	3	0	Median	353720000	160090000	193640000	606	355	576	1336;1337;1338	2803;2804;2805;2806;2807;2808;2809;2810;2811;2812	2805	417	10	9606
EENKSDMNTVLNYIFSHAQVTK	2	0	Unmodified	2567.2326	0.23260207	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					22.689	22.689	3	0.00097302	14682	DP1063-6	79.237	79.237			0.62505	0.63599	NaN	1	0	Median	11169000	5527900	5641400	607	355	576	1339	2813;2814;2815	2813		3	9606
EESAASGGAAYTK	1	0	Unmodified	1240.5572	0.55716033	570	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	0	1					13.388	13.388	2	0.0078863	2925	DP1063-6	104.82	61.741			NaN	NaN	NaN	0	0	Median	1575800	0	1575800	608	570	577	1340	2816;2817	2816		2	9606
EETVNDPEEAGHR	0	1	Unmodified	1481.6383	0.63826419	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			13.359	13.359	2	0.02184	4688	DP1063-8	88.596	44.992			NaN	NaN	NaN	0	0	Median	1961100	0	1961100	609	35	578	1341	2818	2818		1	9606
EFFEIMPNYAK	1	0	Oxidation (M)	1403.6431	0.64313856	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.048	20.048	2	0.046642	13263	DP1063-8	85.731	57.988			NaN	NaN	NaN	0	0	Median	27587000	0	27587000	610	95	579	1342	2819	2819		1	9606
EFHLNESGDPSSK	1	0	Unmodified	1445.6423	0.64228694	123	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				1		15.418	15.418	3	0.0084315	7178	DP1063-9	90.731	72.396			NaN	NaN	NaN	0	0	Median	12474000	0	12474000	611	123	580	1343	2820	2820		1	9606
EFLDFFWDIAKPEQETR	1	1	Unmodified	2170.0371	0.037120373	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				24.685	24.685	3	0.02217	19204	DP1063-7	75.376	49.381			NaN	NaN	NaN	0	0	Median	1548900	0	1548900	612	493	581	1344	2821;2822	2822		2	9606
EFNAEVHR	0	1	Unmodified	1000.4726	0.47264284	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		13.867	13.867	2	0.0014208	5083	DP1063-9	134.81	134.81			NaN	NaN	NaN	0	0	Median	21158000	0	21158000	613	214	582	1345	2823;2824	2823		2	9606
EGAFSNFPISEETIK	1	0	Unmodified	1667.8043	0.80426689	531;490	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	2	0		1				20.765	20.765	2	3.2619E-13	14157	DP1063-7	173.04	133.86			NaN	NaN	NaN	0	0	Median	47103000	0	47103000	614	531;490	583	1346	2825;2826	2825		2	9606
EGEEEQAINR	0	1	Unmodified	1173.5262	0.52619455	517	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					13.96	13.96	2	0.0013515	3618	DP1063-6	148.99	69.274			NaN	NaN	NaN	0	0	Median	3231900	0	3231900	615	517	584	1347	2827;2828	2827		2	9606
EGIPALDNFLDKL	1	0	Unmodified	1443.7609	0.76094551	137	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	2	0		1				25.311	25.311	2	0.0096989	19941	DP1063-7	67.726	36.295			0.83474	0.86014	NaN	1	0	Median	3525000	1529700	1995200	616	137	585	1348	2829;2830;2831	2831		3	9606
EGLPLMVFANWR	0	1	Oxidation (M)	1447.7282	0.7282056	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.33	1.25	1	1		1		23.379	23.379	2	6.9438E-05	15526	DP1063-6	128.12	109.16			0.90583	0.9359	4.3113	3	0	Plateau	69410000	37507000	31902000	617	355	586	1349;1350;1351	2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843	2835	418	12	9606
EGLPLMVFANWR	0	1	Unmodified	1431.7333	0.73329097	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1		1		1		24.707	24.707	2	0.0074827	19190	DP1063-7	74.376	74.376			0.97459	1.0137	9.27	2	0	Median	9143300	4636200	4507100	618	355	586	1352;1353	2844;2845;2846;2847;2848;2849	2844		6	9606
EGPEGFAR	0	1	Unmodified	861.39808	0.39808091	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					15.197	15.197	2	0.051839	5111	DP1063-6	84.916	14.003			NaN	NaN	NaN	0	0	Median	12241000	12241000	0	619	130	587	1354	2850	2850		1	9606
EGPMFEAMIMNR	0	1	3 Oxidation (M)	1472.6098	0.6098063	43	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	3	0	2	0		1				17.334	17.334	2	0.053814	9487	DP1063-7	41.117	25.527			NaN	NaN	NaN	0	0	Median	0	0	0	620	43	588	1355	2851	2851		1	9606
EGPVDVPKGIQAQELER	1	1	Unmodified	1863.969	0.96904081	594				yes	yes	0	0	1	1	0	1					17.275	17.275	3	0.0032994	7713	DP1063-6	68.168	35.171	+		0.82813	0.87457	NaN	1	0	Median	27248000	15207000	12041000	621	594	589	1356	2852	2852		1	9606
EGRPSGEAFVELESEDEVK	1	1	Unmodified	2105.9753	0.97530798	184	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	1	3	0			1			18.563	18.563	3	0.005729	11296	DP1063-8	90.729	65.255			NaN	NaN	NaN	0	0	Median	21992000	0	21992000	622	184	590	1357	2853	2853		1	9606
EGSASTEVLR	0	1	Unmodified	1047.5197	0.51965261	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					14.757	14.757	2	0.01629	4603	DP1063-6	98.582	53.214			NaN	NaN	NaN	0	0	Median	6729600	0	6729600	623	71	591	1358	2854;2855	2854		2	9606
EGSIEIDIPVPK	1	0	Unmodified	1295.6973	0.69728262	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1		1		1		20.526	20.526	2	0.00099054	14051	DP1063-9	112.71	112.71			1.0381	1.067	NaN	1	0	Median	92113000	84552000	7561100	624	483	592	1359;1360	2856;2857;2858;2859	2859		4	9606
EGSLSPASVGSDTLSDLGISSLQDGLALHIR	0	1	Unmodified	3094.5782	0.57823671	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.836	23.836	3	3.8665E-13	16011	DP1063-6	107.76	107.76			0.54934	0.57466	NaN	1	0	Median	6465800	3489300	2976500	625	355	593	1361	2860;2861;2862;2863	2861		4	9606
EHALLAYTLGVK	1	0	Unmodified	1313.7343	0.73433683	309	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3	0.926	1		4	2		18.937	18.937	2;3	6.5593E-05	11860	DP1063-9	138.22	138.22			1.3029	1.3392	19.523	3	0	Median	102810000	29726000	73083000	626	309	594	1362;1363;1364;1365;1366;1367;1368	2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874	2870		11	9606
EHALTSGTIK	1	0	Unmodified	1055.5611	0.56112349	400	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	5	0					1	13.455	13.455	2	0.0077984	5423	DP1063-10	120.87	80.765			NaN	NaN	NaN	0	0	Median	5695700	0	5695700	627	400	595	1369	2875;2876	2875		2	9606
EHHFGSSGMTLHER	0	1	Oxidation (M)	1639.7161	0.71613736	570	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	1	0	1.67	0.471	1	2				12.8	12.8	3;4	0.00030258	3418	DP1063-7	105.95	95.466			6.0227	6.247	24.004	3	0	Plateau	25569000	5239200	20329000	628	570	596	1370;1371;1372	2877;2878;2879;2880;2881;2882	2881	628	6	9606
EHVIEALRR	0	2	Unmodified	1121.6305	0.63054046	177	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	1	5	0					1	14.229	14.229	2	0.026688	6401	DP1063-10	98.629	9.4871			NaN	NaN	NaN	0	0	Median	7136400	0	7136400	629	177	597	1373	2883	2883		1	9606
EIAQDFK	1	0	Unmodified	849.42323	0.42323303	313	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	0	5	0					1	15.441	15.441	2	0.0044262	7802	DP1063-10	97.068	10.201			3.2008	1.8988	NaN	1	0	Median	449270000	106490000	342780000	630	313	598	1374	2884;2885;2886	2886		3	9606
EIAQDFKTDLR	1	1	Unmodified	1334.683	0.68302954	313	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	5	0					2	17.047	17.047	2;3	2.3857E-10	9809	DP1063-10	148.91	88.086			3.3931	3.3486	2.6446	2	0	Median	305650000	74618000	231030000	631	313	599	1375;1376	2887;2888;2889;2890;2891;2892	2892		6	9606
EICAVLAAVTEVIR	0	1	Unmodified	1542.844	0.84396364	420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				24.642	24.642	2	0.00079493	19124	DP1063-7	134.2	83.104			NaN	NaN	NaN	0	0	Median	2918900	0	2918900	632	420	600	1377	2893;2894	2894		2	9606
EIELPSGQLMGLFNR	0	1	Oxidation (M)	1718.8662	0.86615564	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				22.395	22.395	2	0.0028131	16224	DP1063-7	121.9	70.807			NaN	NaN	NaN	0	0	Median	16991000	0	16991000	633	514	601	1378	2895;2896	2896	587	2	9606
EIETYHNLLEGGQEDFESSGAGK	1	0	Unmodified	2509.1245	0.12449141	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.2	0.748	1	2	2			19.526	19.526	2;3	5.3087999999999995E-256	12534	DP1063-8	399.2	318.3		+	NaN	NaN	NaN	0	0	Median	171340000	171340000	0	634	19	602	1379;1380;1381;1382;1383	2897;2898;2899;2900;2901;2902;2903;2904;2905;2906	2905		10	9606
EIFITFR	0	1	Unmodified	924.5069	0.50690308	473	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	4	0				1		20.615	20.615	2	0.042762	14224	DP1063-9	92.467	40.779			NaN	NaN	NaN	0	0	Median	4081900	0	4081900	635	473	603	1384	2907	2907		1	9606
EIFLSQPILLELEAPLK	1	0	Unmodified	1952.1234	0.12341618	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3	0.632		1	3	1		25.442	25.442	2	4.2297E-23	19944	DP1063-9	196.02	133.39			NaN	NaN	NaN	0	0	Median	72628000	0	72628000	636	194;264;265	604	1385;1386;1387;1388;1389	2908;2909;2910;2911;2912;2913;2914	2913		7	9606
EIGVQNVK	1	0	Unmodified	885.49198	0.4919813	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		14.777	14.777	2	0.0035729	6299	DP1063-9	92.467	53.675			19.384	19.923	NaN	1	0	Median	24842000	1126900	23715000	637	138	605	1390	2915;2916	2916		2	9606
EIGYPVMIK	1	0	Oxidation (M)	1064.5576	0.55761802	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2	0		1				18.103	18.103	2	0.0071336	10482	DP1063-7	79.451	61.127			0.9531	0.9821	NaN	1	0	Median	133520000	70023000	63498000	638	94	606	1391	2917;2918;2919	2917	85	3	9606
EIIDLVLDR	0	1	Unmodified	1084.6128	0.61282471	310;434;492	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	4	0.816			1	1	1	21.943	21.943	2	4.729799999999999E-19	15824	DP1063-9	184.38	184.38			3.3121	3.4319	60.516	3	0	Plateau	489870000	115790000	374080000	639	310;434;492	607	1392;1393;1394	2920;2921;2922;2923;2924;2925;2926;2927;2928;2929	2926		10	9606
EIIHVLMDCCLQEK	1	0	Oxidation (M)	1802.8365	0.83651177	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2.8	0.748		2	2	1		18.272	18.272	2;3	3.3542E-18	10652	DP1063-7	222.25	181.09			NaN	NaN	NaN	0	0	Median	367220000	0	367220000	640	418	608	1395;1396;1397;1398;1399	2930;2931;2932;2933;2934;2935;2936;2937;2938;2939	2930	514	10	9606
EIIHVLMDCCLQEK	1	0	Unmodified	1786.8416	0.84159715	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.67	0.943		2		1		19.643	19.643	2;3	4.5466E-18	12587	DP1063-7	215.08	180.38			NaN	NaN	NaN	0	0	Median	136150000	0	136150000	641	418	608	1400;1401;1402	2940;2941;2942;2943;2944	2940		5	9606
EIISNLAK	1	0	Unmodified	886.51238	0.51238239	69	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				16.578	16.578	2	0.048525	8395	DP1063-7	86.472	19.673			NaN	NaN	NaN	0	0	Median	15082000	0	15082000	642	69	609	1403	2945	2945		1	9606
EIKDILIQYDR	1	1	Unmodified	1404.7613	0.76127986	269	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					2	19.288	19.288	2;3	5.6487E-05	12780	DP1063-10	111.94	72.018			5.6621	5.5878	4.5673	2	0	Median	75825000	13565000	62260000	643	269	610	1404;1405	2946;2947;2948;2949;2950;2951	2949		6	9606
EILGTAQSVGCNVDGR	0	1	Unmodified	1674.7995	0.79953264	181	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.546	17.546	2	4.863499999999999E-72	10401	DP1063-10	267.93	267.93			11.605	8.3705	NaN	1	0	Median	209480000	18501000	190980000	644	181	611	1406	2952;2953;2954	2953		3	9606
EILQNTTSLK	1	0	Unmodified	1145.6292	0.62920306	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					16.563	16.563	2	0.036985	6850	DP1063-6	84.213	35.418			NaN	NaN	NaN	0	0	Median	5646700	0	5646700	645	73	612	1407	2955	2955		1	9606
EILSEVER	0	1	Unmodified	973.50803	0.50802529	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			16.921	16.921	2	0.03421	9293	DP1063-8	93.195	16.421			NaN	NaN	NaN	0	0	Median	23567000	0	23567000	646	225	613	1408	2956	2956		1	9606
EIQVQHPAAK	1	0	Unmodified	1119.6037	0.60365701	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			13.093	13.093	2	0.00010019	4349	DP1063-8	122.18	67.4			1.9487	1.9627	NaN	1	0	Median	8132400	3294900	4837500	647	225	614	1409	2957;2958;2959	2959		3	9606
EITALAPSTMK	1	0	Oxidation (M)	1176.606	0.60602477	252;308	P63261;P60709;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	1	0	4	0				1		16.119	16.119	2	0.0024388	8081	DP1063-9	79.489	39.422			0.85945	0.88337	NaN	1	0	Median	51279000	28521000	22758000	648	252;308	615	1410	2960;2961;2962	2960	308	3	9606
EIVHLQAGQCGNQIGAK	1	0	Unmodified	1821.9156	0.91556545	311	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3.5	0.5			2	2		16.037	16.037	2;3	2.5018999999999997E-148	8062	DP1063-8	255.72	0			3.8314	3.938	4.1025	3	0	Median	374830000	73966000	300870000	649	311	616	1411;1412;1413;1414	2963;2964;2965;2966;2967;2968;2969;2970;2971;2972;2973;2974	2966		12	9606
EKAMTDTFTLQAHDQFSPFSSSSGR	1	1	Oxidation (M)	2790.2555	0.25552236	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	0		2				18.841	18.841	3;4	0.00035336	11579	DP1063-7	100.14	77.076			NaN	NaN	NaN	0	0	Median	24963000	24963000	0	650	483	617	1415;1416	2975;2976;2977;2978	2977	550	4	9606
EKPYFPIPEEYTFIQNVPLEDR	1	1	Unmodified	2723.3483	0.34828376	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	3	0			1			22.771	22.771	3	2.6141E-05	16697	DP1063-8	123.55	73.893			NaN	NaN	NaN	0	0	Median	6489500	0	6489500	651	330	618	1417	2979	2979		1	9606
EKVLATVTKPVGGDK	3	0	Unmodified	1540.8825	0.88245763	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	2	4	0				1		14.618	14.618	3	0.026828	6111	DP1063-9	89.506	59.023			NaN	NaN	NaN	0	0	Median	6983400	0	6983400	652	336	619	1418	2980	2980		1	9606
EKYEITEQR	1	1	Unmodified	1194.5881	0.58806652	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				1		14.123	14.123	3	0.035523	5386	DP1063-9	67.704	46.867			NaN	NaN	NaN	0	0	Median	9522000	0	9522000	653	336	620	1419	2981	2981		1	9606
ELAAQLNEEAK	1	0	Unmodified	1214.6143	0.61428128	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					16.083	16.083	2	0.00024357	6284	DP1063-6	109.83	109.83			2.9523	3.0116	NaN	1	0	Median	18337000	5689700	12647000	654	585	621	1420	2982;2983	2983		2	9606
ELAEDGYSGVEVR	0	1	Unmodified	1422.6627	0.66268803	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4.33	0.471				2	1	17.601	17.601	2	3.394E-06	9856	DP1063-9	157.38	142.23			2.7492	2.388	50.831	2	0	Median	179060000	39177000	139880000	655	164	622	1421;1422;1423	2984;2985;2986;2987;2988	2987		5	9606
ELALALQEALEPAVR	0	1	Unmodified	1621.9039	0.90392136	422	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		22.678	22.678	2	1.1763E-16	16787	DP1063-9	185.25	133.81			NaN	NaN	NaN	0	0	Median	12814000	0	12814000	656	422	623	1424	2989;2990	2990		2	9606
ELALQSFDTVQK	1	0	Unmodified	1377.714	0.71399532	522	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	2	0		1				19.532	19.532	2	0.011807	12496	DP1063-7	102.06	63.04			NaN	NaN	NaN	0	0	Median	9273000	0	9273000	657	522	624	1425	2991;2992	2991		2	9606
ELAMQTFGVLK	1	0	Oxidation (M)	1251.6533	0.65330932	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	1	0	2	0		1				19.081	19.081	2	0.017089	11829	DP1063-7	106.88	69.322			NaN	NaN	NaN	0	0	Median	29228000	0	29228000	658	537	625	1426	2993;2994	2994	613	2	9606
ELAPYDENWFYTR	0	1	Unmodified	1702.7627	0.76273643	200	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	21.937	21.937	2	1.6555E-17	16117	DP1063-10	215.87	157.5			NaN	NaN	NaN	0	0	Median	23544000	0	23544000	659	200	626	1427	2995;2996	2996		2	9606
ELAQQVQQVAAEYCR	0	1	Unmodified	1791.8574	0.85738187	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.133	20.133	2	1.7673E-89	13369	DP1063-8	307.55	202.73			NaN	NaN	NaN	0	0	Median	99038000	0	99038000	660	148	627	1428	2997;2998	2998		2	9606
ELASLSFSGDYSGTR	0	1	Unmodified	1588.7369	0.73691561	593				yes	yes	0	0	0	2	0		1				19.4	19.4	2	0.0016212	12295	DP1063-7	128.03	107.72	+		0.94369	0.95635	NaN	1	0	Median	104940000	57258000	47683000	661	593	628	1429	2999;3000;3001;3002	3002		4	9606
ELAYQTFEVLR	0	1	Unmodified	1367.7085	0.70851601	360	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				21.182	21.182	2	1.5248E-05	14703	DP1063-7	162.88	72.168			NaN	NaN	NaN	0	0	Median	12072000	0	12072000	662	360	629	1430	3003;3004	3003		2	9606
ELEFYLR	0	1	Unmodified	968.49673	0.49673232	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	20.303	20.303	2	0.0034493	14061	DP1063-10	101.21	40.424			10.928	7.882	NaN	1	0	Median	75236000	6214700	69021000	663	267	630	1431	3005;3006;3007;3008	3006		4	9606
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	1	0	Unmodified	3054.4869	0.48691928	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			2			22.522	22.522	3	6.2761000000000004E-55	16386	DP1063-8	210.84	182.22			NaN	NaN	NaN	0	0	Median	96574000	15868000	80706000	664	124	631	1432;1433	3009;3010;3011;3012	3009		4	9606
ELEVLLMCNK	1	0	Oxidation (M)	1263.6203	0.62029463	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	0	5	0					1	18.964	18.964	2	3.1397E-05	12308	DP1063-10	126.52	99.829			13.013	7.7198	NaN	1	0	Median	38665000	2719400	35945000	665	296	632	1434	3013;3014	3014	352	2	9606
ELEVLLMCNK	1	0	Unmodified	1247.6254	0.62538001	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					1	20.502	20.502	2	0.0021018	14377	DP1063-10	163.9	110.12			NaN	NaN	NaN	0	0	Median	6925200	0	6925200	666	296	632	1435	3015;3016	3016		2	9606
ELFQTPCTDNPTTDEK	1	0	Unmodified	1894.8255	0.82547262	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					18.165	18.165	2	4.4721E-17	8769	DP1063-6	186.16	154.17			NaN	NaN	NaN	0	0	Median	17668000	0	17668000	667	211	633	1436	3017;3018	3018		2	9606
ELFQTPDHTEESTTDDKTTK	2	0	Unmodified	2322.0499	0.049929483	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					15.558	15.558	3	0.0073247	5584	DP1063-6	84.919	61.486			NaN	NaN	NaN	0	0	Median	5483200	0	5483200	668	211	634	1437	3019;3020;3021	3020		3	9606
ELFQTPGHTEEAVAAGK	1	0	Unmodified	1783.8741	0.87407779	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	2	2				16.999	16.999	2;3	1.0108E-49	8943	DP1063-7	257.2	201.48			NaN	NaN	NaN	0	0	Median	171140000	0	171140000	669	211	635	1438;1439;1440;1441	3022;3023;3024;3025;3026;3027;3028	3028		7	9606
ELFQTPGHTEELVAAGK	1	0	Unmodified	1825.921	0.92102798	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				18.271	18.271	2	7.3994E-33	9031	DP1063-6	217.2	168.25			NaN	NaN	NaN	0	0	Median	28117000	0	28117000	670	211	636	1442;1443	3029;3030;3031;3032	3029		4	9606
ELFQTPGHTEESMTDDKITEVSCK	2	0	Oxidation (M)	2797.2422	0.24224006	211	P46013	MKI67	Antigen KI-67	yes	no	0	1	1	1.33	0.471	2	1				17.159	17.159	3;4	1.3653E-05	9213	DP1063-7	116.92	90.71			NaN	NaN	NaN	0	0	Median	41224000	0	41224000	671	211	637	1444;1445;1446	3033;3034;3035;3036;3037;3038;3039;3040	3040	239	8	9606
ELFQTPGPSEESMTDEK	1	0	Oxidation (M)	1939.8357	0.83570295	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1.5	0.5	1	1				17.871	17.871	2	0.00089373	10123	DP1063-7	131.96	83.518			NaN	NaN	NaN	0	0	Median	28445000	0	28445000	672	211	638	1447;1448	3041;3042;3043	3043	240	3	9606
ELFQTPGTDKPTTDEK	2	0	Unmodified	1805.8683	0.86832371	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					16.353	16.353	3	0.0041452	6611	DP1063-6	94.007	51.619			NaN	NaN	NaN	0	0	Median	11497000	0	11497000	673	211	639	1449	3044;3045;3046	3045		3	9606
ELFQTPVCTDKPTTHEK	2	0	Unmodified	2029.9779	0.97789093	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					15.953	15.953	3	0.028171	6114	DP1063-6	72.207	46.842			NaN	NaN	NaN	0	0	Median	8703300	0	8703300	674	211	640	1450	3047;3048	3047		2	9606
ELFYEDR	0	1	Unmodified	970.43961	0.43961137	370	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		17.891	17.891	2	0.018765	10450	DP1063-9	82.305	57.307			0.73754	0.77149	NaN	1	0	Median	27079000	16162000	10917000	675	370	641	1451	3049;3050;3051;3052	3050		4	9606
ELGITALHIK	1	0	Unmodified	1093.6495	0.64954457	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	18.393	18.393	2	0.0003348	11531	DP1063-10	106.6	24.173			5.4887	3.2561	NaN	1	0	Median	22167000	4233400	17933000	676	271	642	1452	3053;3054	3053		2	9606
ELIEELIAK	1	0	Unmodified	1056.6067	0.6066767	314	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	2	0		1				20.894	20.894	2	0.0018164	14344	DP1063-7	150.05	78.711			NaN	NaN	NaN	0	0	Median	6889700	0	6889700	677	314	643	1453	3055;3056	3056		2	9606
ELIEIISGAAALD	0	0	Unmodified	1313.7078	0.70784731	192	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		24.775	24.775	2	0.0011502	19327	DP1063-9	134.77	96.473			NaN	NaN	NaN	0	0	Median	0	0	0	678	192	644	1454	3057;3058	3057		2	9606
ELIPNIPFQMLLR	0	1	Oxidation (M)	1598.8854	0.88543452	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.3	0.781	1	6	2	1		26.094	26.094	2;3	0.00033431	18267	DP1063-7	90.697	90.697			0.75435	0.77985	6.7997	8	0	Median	694460000	388200000	306270000	679	130	645	1455;1456;1457;1458;1459;1460;1461;1462;1463;1464	3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077;3078;3079	3069	154	21	9606
ELIPNIPFQMLLR	0	1	Unmodified	1582.8905	0.8905199	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			25.027	25.027	2	1.6556E-06	19542	DP1063-7	163.16	163.16			0.83955	0.8612	3.5272	2	0	Median	101100000	52973000	48126000	680	130	645	1465;1466	3080;3081;3082;3083	3080		4	9606
ELISNASDALDK	1	0	Unmodified	1274.6354	0.63541065	113	P08238;P14625	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	yes	no	0	0	0	2	0		1				17.653	17.653	2	0.021512	9888	DP1063-7	70.808	70.808			1.3252	1.3655	NaN	1	0	Median	30646000	12555000	18090000	681	113	646	1467	3084	3084		1	9606
ELISNASDALDKIR	1	1	Unmodified	1543.8206	0.82058566	113	P08238;P14625	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	yes	no	0	0	1	2	0		1				18.904	18.904	3	0.016739	11636	DP1063-7	86.944	50.66			1.3346	1.3975	NaN	1	0	Median	42749000	18370000	24378000	682	113	647	1468	3085	3085		0	9606
ELITEAQTK	1	0	Unmodified	1031.5499	0.5498901	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0.816	1	1	1			15.183	15.183	2	3.6465E-15	6526	DP1063-7	178.3	70.402			65.489	67.481	NaN	1	0	Median	950180000	20653000	929520000	683	418	648	1469;1470;1471	3086;3087;3088;3089;3090;3091;3092	3088		7	9606
ELITEAQTKASGAGSEFQDQTR	1	1	Unmodified	2366.135	0.13499652	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0		1				17.503	17.503	3	1.4628E-12	9713	DP1063-7	159.14	125.44			NaN	NaN	NaN	0	0	Median	25506000	0	25506000	684	418	649	1472	3093;3094	3093		2	9606
ELKEQLGEEIDSK	2	0	Unmodified	1516.7621	0.76206772	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				16.537	16.537	2	7.8175E-23	8416	DP1063-7	234.3	134.73			NaN	NaN	NaN	0	0	Median	24612000	0	24612000	685	531	650	1473	3095	3095		1	9606
ELLADQNLK	1	0	Unmodified	1042.5659	0.56587452	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				16.794	16.794	2	0.0062049	8704	DP1063-7	172.15	74.544			NaN	NaN	NaN	0	0	Median	122880000	0	122880000	686	381	651	1474	3096;3097	3097		2	9606
ELLDLAMQNAWFR	0	1	Oxidation (M)	1621.7923	0.79226242	442	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	1	0	2	0		1				23.122	23.122	2	0.014942	17190	DP1063-7	96.342	59.23			NaN	NaN	NaN	0	0	Median	0	0	0	687	442	652	1475	3098	3098	534	1	9606
ELLIQIFSTPR	0	1	Unmodified	1315.75	0.7499869	459	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		23.332	23.332	2	3.1835E-06	17574	DP1063-9	151.83	151.83			11.593	12.127	NaN	1	0	Median	17997000	1545800	16451000	688	459	653	1476	3099;3100	3099		2	9606
ELLLSAIDSVNATSK	1	0	Unmodified	1559.8407	0.8406524	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				21.418	21.418	2	3.0668E-13	14981	DP1063-7	173.76	103.2			NaN	NaN	NaN	0	0	Median	21436000	0	21436000	689	212	654	1477	3101;3102	3102		2	9606
ELLNFYAWQHR	0	1	Unmodified	1475.731	0.73098279	574	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		20.558	20.558	3	0.021378	14126	DP1063-9	78.655	42.371			NaN	NaN	NaN	0	0	Median	6930800	0	6930800	690	574	655	1478	3103	3103		1	9606
ELLPLIYHHLLR	0	1	Unmodified	1515.8926	0.89256881	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.5	1.5		1			1	20.451	20.451	3	0.0022231	13808	DP1063-7	114.89	87.564			NaN	NaN	NaN	0	0	Median	27863000	0	27863000	691	365	656	1479;1480	3104;3105	3105		2	9606
ELLTLDEKDPR	1	1	Unmodified	1327.6983	0.69834526	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	17.035	17.035	2	0.00064473	9777	DP1063-10	154.84	122.63			NaN	NaN	NaN	0	0	Median	96042000	0	96042000	692	217	657	1481	3106	3106		1	9606
ELMTHHVHTYGLIMGGSNR	0	1	2 Oxidation (M)	2184.0204	0.020441226	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	2	0	2.5	0.5		1	1			14.969	14.969	4	0.0013535	6286	DP1063-7	98.508	75.074			NaN	NaN	NaN	0	0	Median	64689000	0	64689000	693	537	658	1482;1483	3107;3108;3109	3107	614;615	3	9606
ELNITAAK	1	0	Unmodified	858.48108	0.48108226	263	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	15.576	15.576	2	0.029589	8011	DP1063-10	69.198	6.4806			1.677	0.99483	NaN	1	0	Median	14222000	6694000	7528200	694	263	659	1484	3110	3110		1	9606
ELNSTYSEQDPLLK	1	0	Unmodified	1635.7992	0.79918151	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					18.765	18.765	2	0.00087493	9638	DP1063-6	133.42	91.336			NaN	NaN	NaN	0	0	Median	8082300	0	8082300	695	73	660	1485	3111	3111		1	9606
ELPRPVLEGQQSER	0	2	Unmodified	1636.8533	0.85328277	504	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	1	2	0		2				16.246	16.246	2;3	0.005709	8048	DP1063-7	116.01	68.582			NaN	NaN	NaN	0	0	Median	15066000	0	15066000	696	504	661	1486;1487	3112;3113;3114	3114		3	9606
ELSPLFLR	0	1	Unmodified	973.55967	0.55966693	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					20.804	20.804	2	0.023478	12311	DP1063-6	99.375	58.148			NaN	NaN	NaN	0	0	Median	7497200	0	7497200	697	73	662	1488	3115	3115		1	9606
ELTTEIDNNIEQISSYK	1	0	Unmodified	1995.9637	0.96368066	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.33	1.25	1	1		1		21.323	21.323	2	4.0291E-15	13017	DP1063-6	188.96	127.73		+	NaN	NaN	NaN	0	0	Median	25515000	25515000	0	698	16	663	1489;1490;1491	3116;3117;3118;3119;3120;3121	3116		6	9606
ELVSDANQHVK	1	0	Unmodified	1238.6255	0.62551466	182	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	3	0			1			13.692	13.692	3	0.0076333	5091	DP1063-8	66.92	66.92			5.059	5.0952	NaN	1	0	Median	14709000	3079400	11630000	699	182	664	1492	3122	3122		1	9606
EMAQYASNITSVLCQFPSQQIANILDSHAATLNR	0	1	Oxidation (M)	3806.8356	0.83560715	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	2	2				24.546	24.546	3;4	5.0778E-44	16871	DP1063-6	190.45	190.45			0.83903	0.87091	14.589	3	0	Median	55264000	27841000	27423000	700	355	665	1493;1494;1495;1496	3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139	3125	419	17	9606
EMGFTNMTEIQHK	1	0	2 Oxidation (M)	1596.6912	0.69122774	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	2	0	2	0		1				14.661	14.661	3	0.011208	5896	DP1063-7	87.719	75.801			NaN	NaN	NaN	0	0	Median	18806000	0	18806000	701	537	666	1497	3140	3140	616;617	1	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	0	1	2 Oxidation (M)	2851.2753	0.27527152	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	0	3	1		1		1		17.019	17.019	3	1.6373E-15	8991	DP1063-7	153.1	130.84			NaN	NaN	NaN	0	0	Median	99311000	0	99311000	702	381	667	1498;1499	3141;3142;3143;3144;3145	3142	474;475	5	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	0	1	Oxidation (M)	2835.2804	0.2803569	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2	0		1				17.914	17.914	3	4.5216E-05	10270	DP1063-7	87.511	63.235			NaN	NaN	NaN	0	0	Median	21063000	0	21063000	703	381	667	1500	3146;3147;3148	3146	474;475	3	9606
EMQQMVKLEAEMDR	1	1	2 Oxidation (M)	1768.7794	0.77939082	396	Q15147	PLCB4	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4	yes	yes	0	2	1	1	0	1					16.722	16.722	2	0.0081604	7080	DP1063-6	55.776	34.744			0.87887	0.92815	NaN	1	0	Median	13136000	7874000	5261900	704	396	668	1501	3149	3149	484;485	1	9606
ENDPSVMR	0	1	Unmodified	946.41783	0.41783007	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.171	14.171	2	0.0022177	3881	DP1063-6	120.62	87.071			0.89005	0.91852	NaN	1	0	Median	35114000	18937000	16178000	705	355	669	1502	3150;3151;3152;3153	3153		4	9606
ENGMDVFR	0	1	Oxidation (M)	982.41783	0.41783007	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			15.585	15.585	2	0.034579	7498	DP1063-8	58.782	12.411			0.91161	0.93379	10.682	2	0	Median	119220000	59883000	59337000	706	130	670	1503;1504	3154;3155	3155		1	9606
ENNVDAVHPGYGFLSER	0	1	Unmodified	1902.886	0.88603946	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.67	0.943		2		1		18.592	18.592	2;3	1.9981E-127	11162	DP1063-7	317.77	291.06			0.89214	0.88305	25.251	3	0	Plateau	756860000	414240000	342620000	707	130	671	1505;1506;1507	3156;3157;3158;3159;3160;3161;3162;3163;3164;3165;3166	3163		11	9606
ENTDSVVMQPK	1	0	Oxidation (M)	1262.5813	0.58126659	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				14.192	14.192	2	0.050049	5190	DP1063-7	83.883	44.735			NaN	NaN	NaN	0	0	Median	4895900	0	4895900	708	338	672	1508	3167	3167	402	1	9606
ENVLQYCR	0	1	Unmodified	1080.5022	0.50222841	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					16.674	16.674	2	0.024861	6994	DP1063-6	98.299	61.108			NaN	NaN	NaN	0	0	Median	7895500	0	7895500	709	211	673	1509	3168	3168		1	9606
EPFFHGHDNYDQLVR	0	1	Unmodified	1872.8543	0.8543454	312	P68400	CSNK2A1	Casein kinase II subunit alpha	yes	yes	0	0	0	4	0				1		17.885	17.885	3	0.011213	10497	DP1063-9	82.651	50.875			NaN	NaN	NaN	0	0	Median	14521000	0	14521000	710	312	674	1510	3169	3169		1	9606
EPLYVGVDDDKANATVDGLEQGYVVCPSEK	2	0	Unmodified	3266.5289	0.52890325	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	2	0		1				20.636	20.636	3	0.0032452	14013	DP1063-7	62.052	40.796			NaN	NaN	NaN	0	0	Median	10024000	0	10024000	711	537	675	1511	3170	3170		1	9606
EPPGLIFNK	1	0	Unmodified	1013.5546	0.55458155	72	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		18.5	18.5	2	0.044296	11315	DP1063-9	124.59	75.153			NaN	NaN	NaN	0	0	Median	0	0	0	712	72	676	1512	3171	3171		1	9606
EPPGLIFNKVEVSEDEPASK	2	0	Unmodified	2184.095	0.095029182	72	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	1	4	0				1		18.998	18.998	2	0.0035242	12023	DP1063-9	122.63	94.196			NaN	NaN	NaN	0	0	Median	6344800	0	6344800	713	72	677	1513	3172	3172		1	9606
EPPPEFEFIADPPSISAFDLDVVK	1	0	Unmodified	2658.3105	0.31050127	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				25.486	25.486	2	0.020592	20063	DP1063-7	73.593	48.359			NaN	NaN	NaN	0	0	Median	3143900	3143900	0	714	406	678	1514	3173	3173		1	9606
EPQVYVLAPPQEELSK	1	0	Unmodified	1825.9462	0.9461801	6	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3.5	1.12		1	1	1	1	20	20	2	1.1721E-15	13136	DP1063-8	184.98	142.74		+	NaN	NaN	NaN	0	0	Median	114810000	114810000	0	715	6	679	1515;1516;1517;1518	3174;3175;3176;3177;3178;3179;3180;3181	3179		8	
EQDQRPLHPVANPHAEISTK	1	1	Unmodified	2266.1454	0.14544204	540	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	1	3	0			1			14.272	14.272	4	0.0061732	5822	DP1063-8	79.332	55.649			NaN	NaN	NaN	0	0	Median	9113900	0	9113900	716	540	680	1519	3182;3183	3183		2	9606
EQGFLSFWR	0	1	Unmodified	1168.5665	0.56654322	132	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	0	0	0	4	0				1		22.885	22.885	2	0.020973	17070	DP1063-9	72.485	44.378			1.3507	1.4129	NaN	1	0	Median	7037300	2645200	4392100	717	132	681	1520	3184	3184		1	9606
EQGTGNSYTDTSGPK	1	0	Unmodified	1540.6641	0.66414459	552	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	2	0		3				13.914	13.914	2	0.00027754	4851	DP1063-7	132.5	69.427			NaN	NaN	NaN	0	0	Median	0	0	0	718	552	682	1521;1522;1523	3185;3186;3187	3186		3	9606
EQGVLSFWR	0	1	Unmodified	1120.5665	0.56654322	93;133	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	3.33	1.7	1			1	1	21.567	21.567	2	2.6271E-19	15372	DP1063-9	190.52	190.52			2.2594	1.9625	45.685	2	0	Median	114280000	27460000	86819000	719	93;133	683	1524;1525;1526	3188;3189;3190;3191;3192;3193;3194;3195	3195		8	9606
EQIVPKPEEEVAQK	2	0	Unmodified	1622.8516	0.85155143	154	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					2	15.497	15.497	2;3	1.2063E-06	7899	DP1063-10	160.52	82.883			5.8101	5.9213	NaN	1	0	Median	32215000	5016100	27198000	720	154	684	1527;1528	3196;3197;3198;3199	3199		4	9606
EQLAIAEFAR	0	1	Unmodified	1146.6033	0.60332266	149	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			19.81	19.81	2	0.040901	12926	DP1063-8	94.309	31.727			NaN	NaN	NaN	0	0	Median	0	0	0	721	149	685	1529	3200	3200		1	9606
EQLDNQLDAYMSK	1	0	Oxidation (M)	1569.6981	0.69808726	581	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		17.525	17.525	2	0.0037336	9978	DP1063-9	76.332	56.017			1.7616	1.8106	NaN	1	0	Median	16172000	7225500	8946700	722	581	686	1530	3201;3202;3203;3204	3203	633	4	9606
EQLHLVMQGDVIR	0	1	Oxidation (M)	1552.8032	0.80316145	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		2				17.32	17.32	2;3	0.003005	9451	DP1063-7	96.866	64.368			NaN	NaN	NaN	0	0	Median	59257000	0	59257000	723	493	687	1531;1532	3205;3206;3207;3208	3206	573	4	9606
EQLQDMGLEDLFSPEK	1	0	Oxidation (M)	1893.8666	0.86660915	21	CON__P41361			yes	yes	0	1	0	3	0			1			22.053	22.053	2	0.00022649	15835	DP1063-8	115.34	75.762		+	NaN	NaN	NaN	0	0	Median	0	0	0	724	21	688	1533	3209	3209	19	1	9606
EQNVLHMLHQILTPFLLR	0	1	Oxidation (M)	2217.2092	0.20922827	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				23.37	23.37	3	5.9458E-07	17464	DP1063-7	149.99	124.1			NaN	NaN	NaN	0	0	Median	18397000	0	18397000	725	532	689	1534	3210;3211	3210	603	2	9606
EQPQLTSTCHIAISNSENLLGK	1	0	Unmodified	2439.2064	0.20638732	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		2				19.094	19.094	2;3	4.3766E-11	11926	DP1063-7	132.25	105.61			NaN	NaN	NaN	0	0	Median	53360000	0	53360000	726	211	690	1535;1536	3212;3213;3214	3214		3	9606
EQQHVMEELFQSSFR	0	1	Oxidation (M)	1909.8629	0.86286118	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					18.517	18.517	3	0.00080662	9320	DP1063-6	112.02	84.37			NaN	NaN	NaN	0	0	Median	16250000	0	16250000	727	318	691	1537	3215	3215	382	1	9606
EQQIVIQSSGGLSKDDIENMVK	2	0	Oxidation (M)	2433.2057	0.20571862	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	2	0		1				18.088	18.088	2	0.0013839	10474	DP1063-7	98.694	70.641			NaN	NaN	NaN	0	0	Median	0	0	0	728	198	692	1538	3216	3216	222	1	9606
EQSQLTATQTR	0	1	Unmodified	1261.6262	0.62624295	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1.5	0.5	1	1				13.754	13.754	2	1.5296E-05	3368	DP1063-6	161.51	94.48			NaN	NaN	NaN	0	0	Median	13621000	0	13621000	729	431	693	1539;1540	3217;3218;3219	3218		3	9606
EQTFSGGTSQDTK	1	0	Unmodified	1384.6107	0.61065246	570	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				13.68	13.68	2	0.0038685	4542	DP1063-7	113.67	81.35			NaN	NaN	NaN	0	0	Median	3687300	0	3687300	730	570	694	1541	3220;3221	3221		2	9606
EREEFLIPIYHQVAVQFADLHDTPGR	0	2	Unmodified	3079.5516	0.55156844	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	1.22	2	1		1		22.169	22.169	4;5	1.1309E-16	14007	DP1063-6	162.91	125.31			1.2556	1.2758	28.364	4	0	Linear	158630000	76186000	82440000	731	355	695	1542;1543;1544;1545	3222;3223;3224;3225;3226;3227;3228;3229;3230;3231;3232	3224		11	9606
ERHPGSFDVVHVK	1	1	Unmodified	1505.7739	0.77391024	281	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	1	4	0				1		14.577	14.577	3	0.00095046	6076	DP1063-9	89.46	58.462			4.5199	4.2745	NaN	1	0	Median	13533000	3024500	10508000	732	281	696	1546	3233	3233		1	9606
ERLEQQVPVNQVFGQDEMIDVIGVTK	1	1	Oxidation (M)	2986.507	0.50698602	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	1	2.5	1.5	1			1		20.905	20.905	3	5.6226E-11	14508	DP1063-9	122.67	105.14			12.118	11.46	NaN	1	0	Median	70035000	3823200	66212000	733	201	697	1547;1548	3234;3235;3236;3237	3235	227	4	9606
ERPGLGSENMDR	0	2	Oxidation (M)	1375.615	0.61502633	442	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	1	1	2	0		1				13.134	13.134	3	0.03443	3864	DP1063-7	88.101	69.291			NaN	NaN	NaN	0	0	Median	7742800	0	7742800	734	442	698	1549	3238;3239	3238		2	9606
ESADGLQGETQLLVSR	0	1	Unmodified	1701.8533	0.85334235	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				19.583	19.583	2	0.00073709	12525	DP1063-7	131.69	83.178			NaN	NaN	NaN	0	0	Median	37211000	0	37211000	735	211	699	1550;1551	3240;3241;3242	3241		3	9606
ESECITKPVSFLPQNKEEIER	2	1	Unmodified	2532.253	0.25300316	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	2	1	0	1					17.991	17.991	3	0.033739	8624	DP1063-6	68.952	35.285			NaN	NaN	NaN	0	0	Median	0	0	0	736	73	700	1552	3243	3243		1	9606
ESFDGSVR	0	1	Unmodified	895.40356	0.40356022	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				14.933	14.933	2	0.012277	6229	DP1063-7	108.09	42.284			NaN	NaN	NaN	0	0	Median	24232000	0	24232000	737	155	701	1553	3244;3245	3245		2	9606
ESIEEPSAK	1	0	Unmodified	988.47131	0.47130543	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					14.051	14.051	2	0.028045	3734	DP1063-6	90.709	30.231			NaN	NaN	NaN	0	0	Median	3612000	0	3612000	738	71	702	1554	3246	3246		1	9606
ESLCQAALGLILK	1	0	Unmodified	1414.7854	0.78538612	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		24.187	24.187	2	0.00058447	18502	DP1063-7	128.03	101.25			1.0388	1.0677	4.2231	3	0	Median	225030000	108130000	116910000	739	483	703	1555;1556;1557	3247;3248;3249;3250;3251;3252;3253;3254;3255	3247		9	9606
ESRYEEEEEQSR	0	2	Unmodified	1569.6543	0.65430819	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	0	1					13.377	13.377	2	0.0020112	2935	DP1063-6	150.09	93.178			NaN	NaN	NaN	0	0	Median	2243300	0	2243300	740	585	704	1558	3256;3257	3257		2	9606
ESTGAQVQVAGDMLPNSTER	0	1	Oxidation (M)	2104.9695	0.96951109	399;398	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	1	0	4	0				1		16.956	16.956	2	1.6687E-10	9196	DP1063-9	160.63	131.41			2.1506	2.2496	NaN	1	0	Median	24727000	10109000	14619000	741	398;399	705	1559	3258;3259;3260	3258	490	3	9606
ESTLHLVLR	0	1	Unmodified	1066.6135	0.61349341	300	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3.67	1.25		1		1	1	17.4	17.4	2	5.5217E-11	10226	DP1063-10	166.68	112.9			2.0463	2.1405	44.584	3	0	Median	149990000	40765000	109220000	742	300	706	1560;1561;1562	3261;3262;3263;3264;3265;3266;3267;3268	3262		8	9606
ESYDDVSSFR	0	1	Unmodified	1203.5044	0.50439647	489	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		17.55	17.55	2	0.018111	10020	DP1063-9	96.034	75.334			NaN	NaN	NaN	0	0	Median	27292000	0	27292000	743	489	707	1563	3269;3270	3270		2	9606
ESYSIYVYK	1	0	Unmodified	1150.5546	0.55464113	106	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	5	0					1	18.469	18.469	2	0.0010163	11625	DP1063-10	105.14	70.883			3.0923	1.8345	NaN	1	0	Median	67971000	16363000	51608000	744	106	708	1564	3271;3272;3273;3274	3271		4	9606
ESYSVYVYK	1	0	Unmodified	1136.539	0.53899107	61	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	0	5	0					1	17.736	17.736	2	0.0040841	10684	DP1063-10	89.752	73.212			3.5161	2.0859	NaN	1	0	Median	132280000	28107000	104180000	745	61	709	1565	3275;3276;3277;3278	3278		4	9606
ETANAIVSQQTPQR	0	1	Unmodified	1541.7798	0.77978347	204	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		15.49	15.49	2	0.0018654	7255	DP1063-9	119.39	73.414			NaN	NaN	NaN	0	0	Median	0	0	0	746	204	710	1566	3279	3279		1	9606
ETDFYLQSVER	0	1	Unmodified	1385.6463	0.64630969	558	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		19.225	19.225	2	0.0073196	12321	DP1063-9	120.68	71.886			NaN	NaN	NaN	0	0	Median	11680000	0	11680000	747	558	711	1567	3280	3280		1	9606
ETESQLLPDVGAIVTCK	1	0	Unmodified	1858.9346	0.93462914	575	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	5	0					1	21.652	21.652	2	0.0064116	15802	DP1063-10	101.45	63.264			NaN	NaN	NaN	0	0	Median	6092100	0	6092100	748	575	712	1568	3281;3282	3282		2	9606
ETGGFSQEELLK	1	0	Unmodified	1336.6511	0.65106071	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				18.508	18.508	2	3.267E-06	11041	DP1063-7	172.56	125.57			NaN	NaN	NaN	0	0	Median	133930000	0	133930000	749	381	713	1569	3283;3284	3284		2	9606
ETGVDLTKDNMALQR	1	1	Oxidation (M)	1705.8305	0.83049842	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	2	0		1				16.173	16.173	2	0.0052061	7915	DP1063-7	103.46	61.922			NaN	NaN	NaN	0	0	Median	0	0	0	750	198	714	1570	3285	3285	223	1	9606
ETSMVHELNR	0	1	Oxidation (M)	1230.5663	0.56628523	260	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	1	0	1	0	2					13.09	13.09	2;3	8.7691E-05	2539	DP1063-6	94.409	29.569			2.8115	2.9272	18.406	2	0	Median	13549000	3993100	9556200	751	260	715	1571;1572	3286;3287;3288;3289;3290;3291	3286	320	6	9606
ETSPQVKGEEMPAGKDQEASR	2	1	Oxidation (M)	2289.0543	0.054303355	512	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	1	2	3	0			1			12.88	12.88	4	0.01107	4055	DP1063-8	68.639	36.089			NaN	NaN	NaN	0	0	Median	5152300	0	5152300	752	512	716	1573	3292;3293	3292	585	2	9606
ETYGDMADCCEK	1	0	Oxidation (M)	1493.5109	0.51088012	12	CON__P02769			yes	yes	0	1	0	3.25	1.48	1		1	1	1	13.902	13.902	2	0.00024468	5061	DP1063-8	151.22	139.5		+	NaN	NaN	NaN	0	0	Median	897640000	897640000	0	753	12	717	1574;1575;1576;1577	3294;3295;3296;3297;3298;3299	3297	5	6	
ETYGDMADCCEK	1	0	Unmodified	1477.516	0.51596549	12	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1		15.714	15.714	2	1.8156E-06	7606	DP1063-8	180.09	170.76		+	NaN	NaN	NaN	0	0	Median	204910000	204910000	0	754	12	717	1578;1579;1580;1581	3300;3301;3302;3303;3304;3305;3306	3305		7	
ETYGDMADCCEKQEPER	1	1	Oxidation (M)	2132.8085	0.8085187	12	CON__P02769			yes	yes	0	1	1	2.25	0.829	1	1	2			14.089	14.089	2;3	3.1560999999999996E-22	5522	DP1063-8	188.48	177.04		+	NaN	NaN	NaN	0	0	Median	107660000	107660000	0	755	12	718	1582;1583;1584;1585	3307;3308;3309;3310;3311;3312;3313;3314;3315	3315	5	9	
ETYGDMADCCEKQEPERNECFLSHK	2	1	Oxidation (M)	3148.2631	0.26306863	12	CON__P02769			yes	yes	0	1	2	3	0			2			15.506	15.506	3;4	4.954E-05	7395	DP1063-8	101.62	93.957		+	NaN	NaN	NaN	0	0	Median	31247000	31247000	0	756	12	719	1586;1587	3316;3317;3318	3318	5	3	
EVAAFAQFGSDLDAATQQLLSR	0	1	Unmodified	2337.1601	0.16008906	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			25.621	25.621	2;3	5.846099999999999E-156	20194	DP1063-8	320.57	288.1			0.88969	0.92187	16.949	2	0	Median	38821000	20134000	18687000	757	170	720	1588;1589	3319;3320;3321;3322;3323	3322		5	9606
EVADSYAQNAK	1	0	Unmodified	1194.5517	0.55168102	518	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		14.078	14.078	2	0.0037204	5318	DP1063-9	133.58	83.992			NaN	NaN	NaN	0	0	Median	19621000	0	19621000	758	518	721	1590	3324;3325	3325		2	9606
EVALNTIIFMGR	0	1	Oxidation (M)	1378.7279	0.72787125	21	CON__P41361			yes	yes	0	1	0	3	0			1			21.337	21.337	2	0.032871	14902	DP1063-8	90.827	53.636		+	NaN	NaN	NaN	0	0	Median	14163000	14163000	0	759	21	722	1591	3326	3326		1	9606
EVATEEFNSDISLSDNTTPVK	1	0	Unmodified	2295.0754	0.075415952	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0		1				19.698	19.698	2	1.2905E-10	12713	DP1063-7	132.65	93.641			NaN	NaN	NaN	0	0	Median	0	0	0	760	426	723	1592	3327	3327		1	9606
EVATNSELVQSGK	1	0	Unmodified	1360.6834	0.68342347	9	CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;Q04695	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	yes	no	0	0	0	2.5	1.5	1			1		15.099	15.099	2	0.0012175	6667	DP1063-9	134.3	68.006		+	NaN	NaN	NaN	0	0	Median	10974000	10974000	0	761	9	724	1593;1594	3328;3329;3330;3331	3331		4	9606
EVCGFAPYER	0	1	Unmodified	1226.539	0.53900784	580	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	5	0					1	17.74	17.74	2	0.00033877	10715	DP1063-10	105.4	61.002			13.402	9.6662	NaN	1	0	Median	87473000	6105600	81367000	762	580	725	1595	3332;3333;3334	3334		3	9606
EVDDLGPEVGDIK	1	0	Unmodified	1384.6722	0.67219008	48	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	2	0		1				18.691	18.691	2	0.010176	11355	DP1063-7	100.88	56.569			NaN	NaN	NaN	0	0	Median	14440000	0	14440000	763	48	726	1596	3335	3335		1	9606
EVDEQMLNVQNK	1	0	Oxidation (M)	1461.677	0.67695789	311;109;373	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	4	0.816			1	1	1	15.418	15.418	2	1.453E-15	7213	DP1063-8	189.18	144.54			3.7568	3.8223	1.493	2	0	Median	422080000	83082000	339000000	764	109;311;373	727	1597;1598;1599	3336;3337;3338;3339;3340;3341;3342;3343;3344	3338	115	9	9606
EVDEQMLNVQNK	1	0	Unmodified	1445.682	0.68204326	311;109;373	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.5	0.5			1	1		17.184	17.184	2	6.5837E-10	9621	DP1063-8	170.5	111.91			3.5831	3.6456	12.027	2	0	Median	122590000	28426000	94161000	765	109;311;373	727	1600;1601	3345;3346;3347;3348;3349;3350;3351	3347		7	9606
EVEETDEMDQVELVDFDPNQER	0	1	Oxidation (M)	2681.1287	0.12865009	183	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	1	0	4	0				1		20.831	20.831	2	0.016031	14448	DP1063-9	84.842	60.117			NaN	NaN	NaN	0	0	Median	0	0	0	766	183	728	1602	3352	3352	206	1	9606
EVFEDAAEIR	0	1	Unmodified	1177.5615	0.56151742	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				18.149	18.149	2	0.002887	10561	DP1063-7	176.44	122.89			NaN	NaN	NaN	0	0	Median	78651000	0	78651000	767	155	729	1603	3353;3354	3354		2	9606
EVFFMNTQSIVQLVQR	0	1	Oxidation (M)	1953.9982	0.99823245	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.07	0.249	28	2				27.311	27.311	2;3	3.9684E-87	14510	DP1063-6	281.17	281.17			1.0454	1.0529	33.98	5	0	Median	851250000	420890000	430360000	768	355	730	1604;1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631;1632;1633	3355;3356;3357;3358;3359;3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371;3372;3373;3374;3375;3376;3377;3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393;3394;3395;3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406	3358	420	52	9606
EVFFMNTQSIVQLVQR	0	1	Unmodified	1938.0033	0.003317824	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				24.013	24.013	2	6.0014E-122	16231	DP1063-6	302.09	302.09			0.96515	1.0054	14.49	2	0	Median	22072000	11115000	10957000	769	355	730	1634;1635	3407;3408;3409;3410	3407		4	9606
EVFSMAGVVVR	0	1	Oxidation (M)	1208.6223	0.62234354	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	2	0		1				17.911	17.911	2	0.0093989	10211	DP1063-7	67.897	40.594			1.0442	1.0782	NaN	1	0	Median	31600000	13070000	18529000	770	236	731	1636	3411	3411	271	1	9606
EVIINSR	0	1	Unmodified	829.46577	0.46576654	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		14.589	14.589	1;2	0.00017991	6206	DP1063-8	106.42	24.11			1.2092	1.2529	NaN	1	0	Median	42719000	31696000	11023000	771	94	732	1637;1638	3412;3413	3412		1	9606
EVLCPESQSPNGVR	0	1	Unmodified	1570.741	0.74095513	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				16.005	16.005	2	4.0569E-13	7620	DP1063-7	199.68	135.64			NaN	NaN	NaN	0	0	Median	63501000	0	63501000	772	381	733	1639	3414;3415	3414		2	9606
EVLDQVCYR	0	1	Unmodified	1180.5547	0.55465791	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				17.313	17.313	2	0.0010798	9432	DP1063-7	107.66	65.556			0.80815	0.8324	NaN	1	0	Median	36979000	19295000	17684000	773	406	734	1640	3416;3417	3416		2	9606
EVMLVGIGDK	1	0	Oxidation (M)	1075.5583	0.5583463	192	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	1	0	4	0				1		17.912	17.912	2	0.021773	10496	DP1063-9	63.076	17.395			2.077	2.1348	NaN	1	0	Median	16891000	4675200	12216000	774	192	735	1641	3418;3419	3418	214	2	9606
EVPAVPETLK	1	0	Unmodified	1081.6019	0.60192568	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		17.366	17.366	2	0.0030279	9700	DP1063-9	88.177	45.781			7.6702	7.8836	NaN	1	0	Median	100970000	11426000	89539000	775	152	736	1642	3420;3421	3421		2	9606
EVPAVPETLKK	2	0	Unmodified	1209.6969	0.69688869	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				2		15.687	15.687	2;3	0.010167	7504	DP1063-9	56.551	26.411			7.0832	7.493	NaN	1	0	Median	58662000	5958700	52703000	776	152	737	1643;1644	3422;3423;3424	3423		3	9606
EVQAEQPSSSSPR	0	1	Unmodified	1400.6532	0.65318598	573	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				2		13.281	13.281	2	0.0038733	4380	DP1063-9	113.63	13.942			NaN	NaN	NaN	0	0	Median	2010800	0	2010800	777	573	738	1645;1646	3425;3426	3425		2	9606
EVQLGVADK	1	0	Unmodified	957.51311	0.51311067	573	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		15.751	15.751	2	0.04255	7613	DP1063-9	83.783	23.193			NaN	NaN	NaN	0	0	Median	17332000	0	17332000	778	573	739	1647	3427	3427		1	9606
EVQTNDLKEVVNK	2	0	Unmodified	1514.794	0.79403655	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		15.794	15.794	2	1.1384E-40	7648	DP1063-9	262.07	203.82			NaN	NaN	NaN	0	0	Median	22312000	0	22312000	779	254	740	1648	3428;3429	3428		2	9606
EVSFQSTGESEWK	1	0	Unmodified	1512.6733	0.67325272	343	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		18.181	18.181	2	2.4609E-15	10822	DP1063-9	188.99	169.38			20.226	20.789	NaN	1	0	Median	183560000	9325100	174230000	780	343	741	1649	3430;3431	3430		2	9606
EVTFSFIPR	0	1	Unmodified	1094.576	0.57604528	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					21.268	21.268	2	0.020912	12911	DP1063-6	94.114	47.033			NaN	NaN	NaN	0	0	Median	2155400	0	2155400	781	57	742	1650	3432;3433	3432		2	9606
EVVEQGLLK	1	0	Unmodified	1013.5757	0.57571092	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				17.19	17.19	2	0.0092642	9267	DP1063-7	110.81	54.686			NaN	NaN	NaN	0	0	Median	27844000	0	27844000	782	493	743	1651	3434;3435	3434		2	9606
EVYQQQQYGSGGR	0	1	Unmodified	1498.6801	0.68006943	486	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	4	0				1		14.587	14.587	2	0.0025182	6053	DP1063-9	125.23	69.873			NaN	NaN	NaN	0	0	Median	6392900	0	6392900	783	486	744	1652	3436;3437	3436		2	9606
EYEAEGIAK	1	0	Unmodified	1008.4764	0.47639081	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		14.938	14.938	2	1.3893E-10	6699	DP1063-8	163.67	111.03			1.1483	1.1683	3.5239	2	0	Median	955580000	445020000	510560000	784	524	745	1653;1654	3438;3439;3440;3441;3442;3443;3444;3445	3441		8	9606
EYEAEGIAKDGAK	2	0	Unmodified	1379.6569	0.65687437	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			14.15	14.15	2	7.5428E-32	5667	DP1063-8	225.93	225.93			0.92178	0.89731	NaN	1	0	Median	15990000	7943100	8046600	785	524	746	1655	3446;3447;3448;3449	3446		4	9606
EYEATLEECCAK	1	0	Unmodified	1501.6065	0.60649506	12	CON__P02769			yes	yes	0	0	0	2.6	1.02	1	1	2	1		16.328	16.328	2	1.0097E-26	8334	DP1063-8	257.27	217.42		+	NaN	NaN	NaN	0	0	Median	862260000	862260000	0	786	12	747	1656;1657;1658;1659;1660	3450;3451;3452;3453;3454;3455;3456;3457;3458	3453		9	
EYEATLEECCAKDDPHACYSTVFDK	2	0	Unmodified	3037.2416	0.24158813	12	CON__P02769			yes	yes	0	0	1	2.2	0.748	1	2	2			18.24	18.24	3;4	1.4777E-30	9005	DP1063-6	187.59	182.83		+	NaN	NaN	NaN	0	0	Median	443110000	443110000	0	787	12	748	1661;1662;1663;1664;1665	3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471	3459		13	
EYNEDEDPAAR	0	1	Unmodified	1307.5266	0.52658848	356	Q13123	IK	Protein Red	yes	yes	0	0	0	2	0		1				14.447	14.447	2	0.0065672	5596	DP1063-7	125.57	99.995			NaN	NaN	NaN	0	0	Median	7762400	0	7762400	788	356	749	1666	3472;3473	3473		2	9606
EYQTIEDK	1	0	Unmodified	1024.4713	0.47130543	25	CON__Q3SZR3			yes	yes	0	0	0	4	0				1		14.322	14.322	2	0.0025534	5670	DP1063-9	125.25	86.034		+	NaN	NaN	NaN	0	0	Median	34549000	34549000	0	789	25	750	1667	3474;3475	3475		2	
EYRDLTTAGAVTQCYR	0	2	Unmodified	1902.8894	0.88941028	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	1	5	0					2	17.111	17.111	2;3	0.0011362	9870	DP1063-10	112.57	89.59			NaN	NaN	NaN	0	0	Median	21244000	0	21244000	790	335	751	1668;1669	3476;3477;3478	3476		3	9606
EYTINIHK	1	0	Unmodified	1016.5291	0.52909508	294	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	15.498	15.498	2	0.0025655	7924	DP1063-10	143.11	73.909			NaN	NaN	NaN	0	0	Median	24474000	0	24474000	791	294	752	1670	3479;3480	3480		2	9606
FAAATGATPIAGR	0	1	Unmodified	1202.6408	0.6407708	116	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		16.279	16.279	2	4.4187E-06	8324	DP1063-9	153.97	129.94			1.4981	1.5671	NaN	1	0	Median	24513000	8790800	15723000	792	116	753	1671	3481;3482;3483;3484	3481		4	9606
FAAGHDAEGSHSHVHFDEK	1	0	Unmodified	2076.9038	0.90381479	511	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					1	13.508	13.508	4	0.00023655	5485	DP1063-10	120.9	115.19			NaN	NaN	NaN	0	0	Median	29288000	0	29288000	793	511	754	1672	3485;3486	3485		2	9606
FAAHLIAGAPSEGSGALKPELSR	1	1	Unmodified	2278.207	0.20697967	460	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	1	2	0		1				17.905	17.905	3	1.2364E-07	10203	DP1063-7	129.51	98.017			NaN	NaN	NaN	0	0	Median	31641000	0	31641000	794	460	755	1673	3487;3488;3489;3490	3487		4	9606
FADFTVYR	0	1	Unmodified	1017.492	0.4919813	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	2	0		1				19.317	19.317	2	0.029618	12204	DP1063-7	95.352	59.734			NaN	NaN	NaN	0	0	Median	20151000	0	20151000	795	543	756	1674	3491	3491		1	9606
FAEAFEAIPR	0	1	Unmodified	1149.5819	0.58185893	232	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			19.585	19.585	2	0.0003348	12637	DP1063-8	98.582	73.763			1.735	1.7978	NaN	1	0	Median	14663000	4210800	10452000	796	232	757	1675	3492	3492		1	9606
FAEALGSTEAK	1	0	Unmodified	1122.5557	0.55570376	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				15.963	15.963	2	0.0086015	7584	DP1063-7	112.36	58.2			NaN	NaN	NaN	0	0	Median	9810300	9810300	0	797	316	758	1676	3493;3494	3494		2	9606
FAEDEEKSENSSEDGDITDK	2	0	Unmodified	2243.919	0.91897489	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2.5	0.5		2	2			15.016	15.016	2;3	9.9891E-71	6792	DP1063-8	268.18	235.62			NaN	NaN	NaN	0	0	Median	214530000	0	214530000	798	418	759	1677;1678;1679;1680	3495;3496;3497;3498;3499;3500;3501;3502	3499		8	9606
FAIYETVR	0	1	Unmodified	997.52328	0.52328142	551	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	4	0				1		18.445	18.445	2	0.022095	11227	DP1063-9	100.45	61.429			NaN	NaN	NaN	0	0	Median	14164000	0	14164000	799	551	760	1681	3503;3504	3503		2	9606
FANPFPAAVR	0	1	Unmodified	1088.5767	0.57671398	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	19.353	19.353	2	4.7302E-05	12262	DP1063-8	127.12	127.12			0.87316	0.91798	25.071	3	0	Plateau	365620000	194460000	171160000	800	95	761	1682;1683;1684	3505;3506;3507;3508;3509;3510;3511;3512;3513;3514	3509		10	9606
FAPEMDDYVGTFLEGCQDDPER	0	1	Oxidation (M)	2606.0577	0.057733753	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				22.048	22.048	2	1.9815E-05	15854	DP1063-7	134.02	117.45			NaN	NaN	NaN	0	0	Median	11295000	0	11295000	801	493	762	1685	3515;3516;3517	3516	574	3	9606
FAQALGLTEAVK	1	0	Unmodified	1246.6921	0.69213767	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				18.936	18.936	2	0.00061735	11632	DP1063-7	117.7	59.265			1.1163	1.1502	NaN	1	0	Median	34392000	15965000	18427000	802	316	763	1686	3518;3519	3518		2	9606
FAQHGTFEYEYSQR	0	1	Unmodified	1761.7747	0.7746981	163	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				16.74	16.74	2	0.0015637	8646	DP1063-7	123.95	89.264			NaN	NaN	NaN	0	0	Median	0	0	0	803	163	764	1687	3520	3520		1	9606
FASFIDK	1	0	Unmodified	826.4225	0.42250475	20;17;26;13;14	P35908;CON__P35908v2;CON__P35908;CON__O95678;O95678;Q01546;CON__Q6NXH9;CON__Q7Z794;CON__Q01546;CON__Q5XKE5;CON__Q9R0H5;CON__P19013;Q86Y46;CON__Q7RTS7;Q7Z794;Q5XKE5;Q7RTS7;CON__Q32MB2;P19013;CON__P12035;CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;P12035;Q14CN4;Q3SY84;CON__Q3TTY5;CON__P13647;P13647;CON__P05787;P05787;CON__Q9DCV7;CON__Q3KNV1;CON__P08729;CON__Q9H552;CON__Q9NSB2;CON__Q6ISB0;P08729;Q9NSB2;CON__P07744	KRT2;KRT75;KRT76;KRT73;KRT77;KRT79;KRT74;KRT4;KRT3;KRT72;KRT71;KRT5;KRT8;KRT7;KRT84	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4	no	no	0	0	0	2	1	1		1			17.903	17.903	2	0.00067004	10361	DP1063-8	128.86	62.964		+	NaN	NaN	NaN	0	0	Median	83775000	83775000	0	804	20;26;17;13;14	765	1688;1689	3521;3522;3523	3522		3	9606
FATEAAITILR	0	1	Unmodified	1204.6816	0.68157298	149	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			20.261	20.261	2	0.0026236	13537	DP1063-8	136.57	83.4			NaN	NaN	NaN	0	0	Median	8237600	0	8237600	805	149	766	1690	3524	3524		1	9606
FCFTPHTEEGCLSER	0	1	Unmodified	1868.7822	0.78216801	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					17.714	17.714	3	0.0018989	8301	DP1063-6	83.877	71.085			1.5826	1.6581	NaN	1	0	Median	10275000	3986200	6289100	806	224	767	1691	3525;3526	3526		2	9606
FCIWTESAFR	0	1	Unmodified	1315.6019	0.60194245	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3.5	0.5			1	1		21.676	21.676	2	1.13E-16	15525	DP1063-9	190.26	134.73			9.9708	10.43	NaN	1	0	Median	80285000	8212500	72073000	807	193	768	1692;1693	3527;3528;3529;3530;3531;3532	3530		6	9606
FCLFHSFFVTK	1	0	Unmodified	1431.7009	0.70092821	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.795	21.795	2	0.027193	15496	DP1063-7	89.171	45.874			NaN	NaN	NaN	0	0	Median	11702000	0	11702000	808	493	769	1694	3533;3534	3533		2	9606
FCNTEDEETMYLR	0	1	Oxidation (M)	1722.6865	0.68653629	518	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	1	0	4	0				1		17.807	17.807	2	0.020584	10334	DP1063-9	95.483	71.807			NaN	NaN	NaN	0	0	Median	9176400	0	9176400	809	518	770	1695	3535;3536	3535	591	2	9606
FDAGELITQR	0	1	Unmodified	1148.5826	0.58258722	188	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		19.247	19.247	2	0.0064279	12336	DP1063-9	79.974	79.974			1.0426	1.0906	NaN	1	0	Median	20156000	11140000	9016900	810	188	771	1696	3537	3537		1	9606
FDCHHCNESLFGK	1	0	Unmodified	1649.6715	0.67149535	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		15.756	15.756	3	0.00064975	7652	DP1063-9	96.067	93.229			0.77456	0.79611	NaN	1	0	Median	18464000	10711000	7752900	811	377	772	1697	3538;3539;3540;3541	3541		4	9606
FDDVTSEDTR	0	1	Unmodified	1183.4993	0.4993111	519	Q9H6R0	DHX33	Putative ATP-dependent RNA helicase DHX33	yes	yes	0	0	0	2	0		1				15.214	15.214	2	0.0071198	6617	DP1063-7	124.23	62.231			NaN	NaN	NaN	0	0	Median	9211200	0	9211200	812	519	773	1698	3542;3543	3543		2	9606
FDGALNVDLTEFQTNLVPYPR	0	1	Unmodified	2408.2012	0.20122559	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.75	0.829			2	1	1	24.229	24.229	2;3	1.5701E-98	18495	DP1063-8	296.49	256.68			1.6088	1.6749	16.037	2	0	Median	124570000	15099000	109470000	813	310;434;492	774	1699;1700;1701;1702	3544;3545;3546;3547;3548;3549;3550;3551;3552;3553	3546		10	9606
FDLMYAK	1	0	Unmodified	886.42588	0.42587556	310;434;492	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			19.023	19.023	2	0.014131	11913	DP1063-8	86.512	49.418			2.3863	2.4034	NaN	1	0	Median	23367000	8044900	15322000	814	310;434;492	775	1703	3554;3555	3555		2	9606
FDLMYAK	1	0	Oxidation (M)	902.42079	0.42079019	310;434;492	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	1	0	4	0				1		17.694	17.694	2	0.020057	10198	DP1063-9	70.912	30.809			2.875	2.955	NaN	1	0	Median	22559000	6542100	16017000	815	310;434;492	775	1704	3556;3557	3556	367	2	9606
FDTGNLCMVTGGANLGR	0	1	Oxidation (M)	1797.8138	0.81380249	281	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	4	0				1		19.236	19.236	2	1.6378E-05	12291	DP1063-9	152	152			4.9313	5.1584	NaN	1	0	Median	57437000	8404900	49033000	816	281	776	1705	3558;3559	3559	336	2	9606
FDTGNLCMVTGGANLGR	0	1	Unmodified	1781.8189	0.81888787	281	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		20.326	20.326	2	0.004668	13827	DP1063-9	106.55	61.191			NaN	NaN	NaN	0	0	Median	18138000	0	18138000	817	281	776	1706	3560	3560		1	9606
FDVQLKDLEK	2	0	Unmodified	1233.6605	0.66050319	268	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	5	0					1	18.459	18.459	3	0.02763	11703	DP1063-10	72.434	8.0601			NaN	NaN	NaN	0	0	Median	21914000	0	21914000	818	268	777	1707	3561;3562	3562		2	9606
FEAHPNDLYVEGLPENIPFR	0	1	Unmodified	2356.1488	0.14879609	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				21.406	21.406	3	2.1397E-05	15035	DP1063-7	97.384	79.959			0.98466	1.0196	NaN	1	0	Median	26220000	14976000	11244000	819	316	778	1708	3563;3564;3565;3566	3565		4	9606
FEEEGNPYYSSAR	0	1	Unmodified	1547.6529	0.65285163	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.707			1	2	1	16.865	16.865	2	2.9826E-32	9172	DP1063-8	225.01	225.01			1.0341	1.0715	NaN	1	0	Median	230030000	101610000	128430000	820	524	779	1709;1710;1711;1712	3567;3568;3569;3570;3571;3572	3568		6	9606
FEELCSDLFR	0	1	Unmodified	1314.5914	0.59143734	124;145	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			20.988	20.988	2	9.0038E-08	14463	DP1063-8	150.36	108.25			4.603	4.7695	NaN	1	0	Median	30590000	8220900	22369000	821	145;124	780	1713	3573	3573		1	9606
FEELNADLFR	0	1	Unmodified	1252.6088	0.60880197	128	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	2.5	0.5		1	1			21.066	21.066	2	3.6275E-13	14529	DP1063-8	194.9	90.839			NaN	NaN	NaN	0	0	Median	10511000	0	10511000	822	128	781	1714;1715	3574;3575;3576	3576		3	9606
FELTGIPPAPR	0	1	Unmodified	1196.6554	0.65535823	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.365	19.365	2	0.011552	12264	DP1063-8	71.379	71.379			3.6698	3.8025	NaN	1	0	Median	248450000	67390000	181060000	823	128	782	1716	3577;3578;3579	3577		3	9606
FENAFLSHVVSQHQALLGTIR	0	1	Unmodified	2366.2495	0.24951318	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.018	21.018	3	9.6448E-05	14508	DP1063-8	122.64	95.674			NaN	NaN	NaN	0	0	Median	49492000	49492000	0	824	170	783	1717	3580;3581	3580		2	9606
FEPPQSDSDGQR	0	1	Unmodified	1361.5848	0.58477206	43	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				14.741	14.741	2	0.0072953	5957	DP1063-7	108.67	75.775			NaN	NaN	NaN	0	0	Median	7782300	0	7782300	825	43	784	1718	3582;3583	3582		2	9606
FEPYANPTKR	1	1	Unmodified	1221.6142	0.6142217	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	2	0		1				14.854	14.854	3	0.00030212	6186	DP1063-7	91.584	62.497			0.80534	0.84328	NaN	1	0	Median	31417000	15812000	15605000	826	236	785	1719	3584;3585	3585		2	9606
FESPEVAER	0	1	Unmodified	1062.4982	0.49818889	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	5	0					1	15.798	15.798	2	0.027193	8319	DP1063-10	68.016	39.098			0.72429	0.5224	NaN	1	0	Median	9541700	6190000	3351700	827	236	786	1720	3586	3586		1	9606
FFEVILIDPFHK	1	0	Unmodified	1503.8126	0.81258715	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					2	23.597	23.597	2;3	0.00016511	18072	DP1063-10	151.22	151.22			10.716	6.3574	NaN	1	0	Median	34909000	1545800	33364000	828	257	787	1721;1722	3587;3588;3589;3590	3590		4	9606
FFFDPVR	0	1	Unmodified	926.46504	0.46503826	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				20.989	20.989	2	0.039293	14453	DP1063-7	94.163	67.043			NaN	NaN	NaN	0	0	Median	14739000	0	14739000	829	532	788	1723	3591	3591		1	9606
FFGTAVTCLLSPHSQVLTAATQSLK	1	0	Unmodified	2676.3945	0.39452244	420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				22.734	22.734	3	0.054816	16707	DP1063-7	50.873	28.218			NaN	NaN	NaN	0	0	Median	8958500	0	8958500	830	420	789	1724	3592	3592		1	9606
FFVMTSLR	0	1	Oxidation (M)	1015.5161	0.51608756	241	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	1	0	4	0				1		18.751	18.751	2	0.0067567	11620	DP1063-9	83.753	37.737			2.209	2.3107	NaN	1	0	Median	16168000	5403400	10765000	831	241	790	1725	3593;3594	3593	298	2	9606
FGAYIVDGLR	0	1	Unmodified	1109.5869	0.58694431	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.55	0.988	8	1	1	1		23.938	23.938	2	9.4804E-06	13615	DP1063-9	136.8	107.65			1.0155	1.041	11.454	10	0	Median	209030000	94302000	114720000	832	355;38	791	1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736	3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620	3618		26	9606
FGDPVVQSDMK	1	0	Unmodified	1221.57	0.56997362	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.201	17.201	2	0.0083599	9661	DP1063-8	113.93	69.577			NaN	NaN	NaN	0	0	Median	21775000	0	21775000	833	124	792	1737	3621;3622	3621		2	9606
FGEYNSNMSPEEK	1	0	Oxidation (M)	1546.6246	0.62458797	314	P78316	NOP14	Nucleolar protein 14	yes	yes	0	1	0	2	0		1				15.317	15.317	2	0.012961	6737	DP1063-7	103.34	72.518			NaN	NaN	NaN	0	0	Median	9926800	0	9926800	834	314	793	1738	3623;3624	3624	376	2	9606
FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK	1	0	Unmodified	4091.0653	0.065347814	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.5	0.5		1	1			23.093	23.093	3	2.755E-13	17174	DP1063-8	92.976	77.314		+	NaN	NaN	NaN	0	0	Median	48885000	48885000	0	835	20	794	1739;1740	3625;3626;3627;3628	3628		4	9606
FGMFEFLSNHMR	0	1	2 Oxidation (M)	1546.6697	0.66970444	241	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	2	0	4	0				1		19.173	19.173	3	0.010212	12247	DP1063-9	56.551	45.096			2.0428	2.1369	NaN	1	0	Median	19586000	6864100	12722000	836	241	795	1741	3629;3630	3630	299;300	2	9606
FGNQEDAHEFLR	0	1	Unmodified	1461.6637	0.66369108	549	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	2	0		1				17.093	17.093	3	0.026645	9151	DP1063-7	75.479	47.512			NaN	NaN	NaN	0	0	Median	15555000	0	15555000	837	549	796	1742	3631	3631		1	9606
FGQGGAGPVGGQGPR	0	1	Unmodified	1340.6585	0.65854613	163	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				15.279	15.279	2	0.017938	6721	DP1063-7	63.32	63.32			2.4137	2.5046	NaN	1	0	Median	17882000	4322400	13560000	838	163	797	1743	3632;3633	3633		2	9606
FGVEQDVDMVFASFIR	0	1	Oxidation (M)	1874.8873	0.88728501	140	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	0	3	0			1			25.657	25.657	2	0.00083719	20211	DP1063-8	101.38	82.305			0.76876	0.79656	NaN	1	0	Median	8382100	4552900	3829200	839	140	798	1744	3634;3635	3635	172	2	9606
FGYVDFESAEDLEK	1	0	Unmodified	1647.7304	0.73043325	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				21.41	21.41	2	1.0387E-10	15004	DP1063-7	180.66	163.75			NaN	NaN	NaN	0	0	Median	54165000	0	54165000	840	155	799	1745	3636;3637	3637		2	9606
FHFIDIYLDELSK	1	0	Unmodified	1638.8294	0.82935943	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	0.471		2	1			23.096	23.096	2;3	1.8732E-07	17151	DP1063-7	165.63	137.77			NaN	NaN	NaN	0	0	Median	93653000	0	93653000	841	381	800	1746;1747;1748	3638;3639;3640;3641;3642;3643	3638		6	9606
FIEIAAR	0	1	Unmodified	818.46504	0.46503826	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				17.269	17.269	2	0.011683	9417	DP1063-7	88.734	32.224			3.9128	3.9673	NaN	1	0	Median	101660000	19804000	81851000	842	330	801	1749	3644;3645;3646	3645		3	9606
FIGPSPEVVR	0	1	Unmodified	1099.6026	0.60259438	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.71	1.28	1	3	1	1	1	21.147	21.147	2	0.00015707	10090	DP1063-8	119.21	119.21			0.77758	0.77661	17.473	7	0	Median	1127200000	621040000	506150000	843	130	802	1750;1751;1752;1753;1754;1755;1756	3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661	3656		15	9606
FIGPSPEVVRK	1	1	Unmodified	1227.6976	0.69755739	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				15.993	15.993	3	5.473E-05	7591	DP1063-7	103.34	69.466			0.77417	0.81064	NaN	1	0	Median	95494000	53473000	42021000	844	130	803	1757	3662;3663;3664	3663		3	9606
FIHDQTSPNPK	1	0	Unmodified	1282.6306	0.63060004	241	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		13.301	13.301	3	0.0013719	4340	DP1063-9	82.261	82.261			1.6547	1.7007	NaN	1	0	Median	16731000	6038900	10692000	845	241	804	1758	3665;3666;3667	3667		3	9606
FIIGSVSEDNSEDEISNLVK	1	0	Unmodified	2194.0641	0.064122984	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.43	1.5	3	1	1	1	1	22.088	22.088	2;3	2.378E-204	13979	DP1063-6	350.9	313.96			0.96546	0.98984	21.188	4	0	Median	388450000	190190000	198260000	846	355	805	1759;1760;1761;1762;1763;1764;1765	3668;3669;3670;3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687	3674		20	9606
FIKPIFTDESYLELYR	1	1	Unmodified	2033.051	0.050979523	333	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	1	2	0		1				21.885	21.885	3	0.020481	15688	DP1063-7	76.391	47.5			NaN	NaN	NaN	0	0	Median	10481000	0	10481000	847	333	806	1766	3688	3688		1	9606
FILSLASCK	1	0	Unmodified	1037.558	0.55795237	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				19.81	19.81	2	0.0061521	12867	DP1063-7	122.18	75.513			NaN	NaN	NaN	0	0	Median	21064000	0	21064000	848	514	807	1767	3689;3690	3689		2	9606
FINMFAVLDELK	1	0	Oxidation (M)	1454.7479	0.74793799	437;474	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	1	0	2	0		1				22.752	22.752	2	0.053349	16718	DP1063-7	81.017	46.248			NaN	NaN	NaN	0	0	Median	3184200	3184200	0	849	437;474	808	1768	3691	3691		1	9606
FINNEYYPADLQVAPTQDLR	0	1	Unmodified	2366.1543	0.1542754	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					21.192	21.192	2	1.3151E-43	12797	DP1063-6	222.81	171.09			NaN	NaN	NaN	0	0	Median	12456000	0	12456000	850	73	809	1769	3692;3693	3693		2	9606
FINYVKNCFR	1	1	Unmodified	1359.6758	0.6757761	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		17.629	17.629	3	0.024943	10117	DP1063-9	74.376	35.626			NaN	NaN	NaN	0	0	Median	15919000	0	15919000	851	105	810	1770	3694	3694		1	9606
FITDNTVEER	0	1	Unmodified	1222.583	0.58298115	56	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	2	0		1				16.557	16.557	2	0.026038	8407	DP1063-7	91.069	41.353			NaN	NaN	NaN	0	0	Median	13766000	0	13766000	852	56	811	1771	3695	3695		1	9606
FKDLGEEHFK	2	0	Unmodified	1248.6139	0.61388734	12	CON__P02769			yes	yes	0	0	1	2.74	0.735	2	4	15	2		17.272	17.272	2;3	0.00052912	14466	DP1063-8	141.91	85.279		+	NaN	NaN	NaN	0	0	Median	77294000000	77294000000	0	853	12	812	1772;1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794	3696;3697;3698;3699;3700;3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742	3728		47	
FKDLGEEHFKGLVLIAFSQYLQQCPFDEHVK	3	0	Unmodified	3721.8603	0.86028899	12	CON__P02769			yes	yes	0	0	2	3	0			1			23.217	23.217	5	6.4518E-08	17388	DP1063-8	89.024	75.224		+	NaN	NaN	NaN	0	0	Median	28795000	28795000	0	854	12	813	1795	3743	3743		1	
FKEANNFLWPFK	2	0	Unmodified	1539.7874	0.78743503	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				2		21.521	21.521	2;3	0.0080509	15269	DP1063-9	90.697	54.405			NaN	NaN	NaN	0	0	Median	34930000	0	34930000	855	152	814	1796;1797	3744;3745;3746;3747	3744		4	9606
FKGQILMPNIGYGSNK	2	0	Oxidation (M)	1781.9134	0.91344018	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	1	5	0					1	17.577	17.577	2	2.9635E-05	10462	DP1063-10	148.89	96.1			NaN	NaN	NaN	0	0	Median	7912200	0	7912200	856	296	815	1798	3748;3749	3748	353	2	9606
FLASDLDQK	1	0	Unmodified	1035.5237	0.52367535	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					17.196	17.196	2	0.025648	7679	DP1063-6	91.853	59.499			NaN	NaN	NaN	0	0	Median	8466200	0	8466200	857	73	816	1799	3750	3750		1	9606
FLAVGLVDNTVR	0	1	Unmodified	1302.7296	0.7295858	402	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					20.585	20.585	2	0.0082674	11971	DP1063-6	107.24	83.393			NaN	NaN	NaN	0	0	Median	7401900	0	7401900	858	402	817	1800	3751;3752	3751		2	9606
FLDQSLGEQVVK	1	0	Unmodified	1361.7191	0.7190807	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					19.018	19.018	2	0.011492	9983	DP1063-6	102.52	46.092			NaN	NaN	NaN	0	0	Median	13141000	0	13141000	859	73	818	1801	3753;3754	3753		2	9606
FLEQQNQVLQTK	1	0	Unmodified	1474.778	0.77799256	88;20	P35908;CON__P35908v2;CON__P35908;CON__Q6NXH9;CON__Q7Z794;CON__Q9R0H5;Q7Z794;P04264;CON__P04264	KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	no	no	0	0	0	3.25	1.48	1		1	1	1	17.258	17.258	2	2.857E-10	9676	DP1063-8	253.71	166.83		+	NaN	NaN	NaN	0	0	Median	693790000	693790000	0	860	20;88	819	1802;1803;1804;1805	3755;3756;3757;3758;3759;3760;3761;3762;3763	3760		9	9606
FLESLPEEEQQR	0	1	Unmodified	1503.7205	0.72053726	146	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				18.275	18.275	2	0.01336	10767	DP1063-7	99.788	62.239			NaN	NaN	NaN	0	0	Median	18857000	0	18857000	861	146	820	1806	3764	3764		1	9606
FLHKHDLDLICR	1	1	Unmodified	1565.8137	0.81366656	194;264	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	1	3.33	0.471			2	1		16.423	16.423	2;3	0.00040399	8580	DP1063-8	138.24	117.65			NaN	NaN	NaN	0	0	Median	708760000	0	708760000	862	194;264	821	1807;1808;1809	3765;3766;3767;3768	3766		4	9606
FLILPDMLK	1	0	Oxidation (M)	1104.6253	0.62530365	279	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	1	0	5	0					1	21.347	21.347	2	0.014647	15411	DP1063-10	70.919	47.876			3.9764	2.3589	NaN	1	0	Median	13913000	3257400	10656000	863	279	822	1810	3769;3770;3771;3772	3770	332	4	9606
FLLLFTFLK	1	0	Unmodified	1140.6947	0.69470385	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2	0		1				26.158	26.158	2	0.05358	20924	DP1063-7	79.906	62.676			NaN	NaN	NaN	0	0	Median	2785900	0	2785900	864	537	823	1811	3773	3773		1	9606
FLNRHDLDLICR	0	2	Unmodified	1570.8038	0.80383016	265	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	1	4	0				1		18.078	18.078	3	0.0035252	10766	DP1063-9	105.03	69.995			NaN	NaN	NaN	0	0	Median	10999000	0	10999000	865	265	824	1812	3774	3774		1	9606
FLPVFDIVIHR	0	1	Unmodified	1354.7761	0.77614207	557	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	2	0		1				22.708	22.708	3	0.020635	16684	DP1063-7	79.07	43.574			NaN	NaN	NaN	0	0	Median	7296200	0	7296200	866	557	825	1813	3775;3776	3776		2	9606
FLQGDSFLNEDLNQLIK	1	0	Unmodified	1993.0157	0.015656649	460	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				23.729	23.729	2	7.7557E-06	17995	DP1063-7	145.14	100.06			NaN	NaN	NaN	0	0	Median	17346000	0	17346000	867	460	826	1814	3777;3778	3777		2	9606
FLSDVYPDGFK	1	0	Unmodified	1286.6183	0.61830402	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		20.322	20.322	2	1.3118E-11	13556	DP1063-8	182.39	145.83			0.95355	0.97255	6.8549	3	0	Plateau	188900000	92457000	96443000	868	94	827	1815;1816;1817	3779;3780;3781;3782;3783;3784;3785;3786;3787;3788	3785		10	9606
FLSPPALQGYVAWLR	0	1	Unmodified	1716.9352	0.9351619	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				24.363	24.363	2	8.3493E-09	18760	DP1063-7	166.66	132.77			NaN	NaN	NaN	0	0	Median	7893800	0	7893800	869	493	828	1818	3789;3790	3790		2	9606
FLTFAER	0	1	Unmodified	882.45995	0.45995289	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					18.799	18.799	2	0.018102	9637	DP1063-6	105.2	63.548			NaN	NaN	NaN	0	0	Median	15307000	0	15307000	870	73	829	1819	3791;3792	3791		2	9606
FLVEAPHDWDLEEVMNSIR	0	1	Oxidation (M)	2315.0892	0.089232298	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	1	0	2	0		1				21.945	21.945	3	0.039403	15744	DP1063-7	60.938	36.087			NaN	NaN	NaN	0	0	Median	14807000	0	14807000	871	383	830	1820	3793	3793		1	9606
FLVHNVK	1	0	Unmodified	855.49667	0.49667274	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					1	14.244	14.244	2	0.0014688	6391	DP1063-10	109.7	72.675			11.854	7.0322	NaN	1	0	Median	34048000	2995200	31053000	872	296	831	1821	3794;3795	3795		2	9606
FLVQNIHTLAELK	1	0	Unmodified	1524.8664	0.86641364	459	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		19.767	19.767	3	0.00066695	13100	DP1063-9	132.14	72.041			NaN	NaN	NaN	0	0	Median	23743000	0	23743000	873	459	832	1822	3796;3797	3796		2	9606
FLYECPWR	0	1	Unmodified	1169.5328	0.53280025	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				20.199	20.199	2	3.2366E-06	13267	DP1063-7	151.17	151.17			0.96215	0.98363	9.0737	2	0	Median	327810000	173210000	154590000	874	130	833	1823;1824	3798;3799;3800;3801;3802;3803;3804;3805;3806;3807	3806		10	9606
FLYIWPNAR	0	1	Unmodified	1178.6237	0.62366417	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.29	0.7			6		1	28.036	28.036	2	1.3405E-10	15340	DP1063-8	163.84	163.84			1.1441	0.98904	9.9425	2	0	Median	483270000	232080000	251190000	875	524	834	1825;1826;1827;1828;1829;1830;1831	3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818;3819;3820	3812		13	9606
FMLETMLALK	1	0	Oxidation (M)	1211.6294	0.62940275	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2	0		1				20.788	20.788	2	0.052564	14163	DP1063-7	85.161	44.437			NaN	NaN	NaN	0	0	Median	17560000	0	17560000	876	418	835	1832	3821	3821	515;516	1	9606
FMSAYEQR	0	1	Oxidation (M)	1046.4491	0.4491302	404	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	0	3	0			1			14.592	14.592	2	0.001354	6223	DP1063-8	98.523	69.147			0.76084	0.78835	NaN	1	0	Median	53498000	30863000	22636000	877	404	836	1833	3822;3823	3823	496	2	9606
FNADEFEDMVAEK	1	0	Oxidation (M)	1559.645	0.64498906	177	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	5	0					1	19.195	19.195	2	0.0033452	12494	DP1063-10	127.17	103.5			NaN	NaN	NaN	0	0	Median	22020000	0	22020000	878	177	837	1834	3824;3825	3824	201	2	9606
FNADEFEDMVAEK	1	0	Unmodified	1543.6501	0.65007443	177	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	5	0					1	21.159	21.159	2	0.026593	15245	DP1063-10	84.479	48.769			NaN	NaN	NaN	0	0	Median	5401900	0	5401900	879	177	837	1835	3826	3826		1	9606
FNADEFEDMVAEKR	1	1	Oxidation (M)	1715.7461	0.74610008	177	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	5	0					1	18.335	18.335	3	0.0016383	11334	DP1063-10	121.76	92.748			NaN	NaN	NaN	0	0	Median	18709000	0	18709000	880	177	838	1836	3827;3828	3827	201	2	9606
FNASQLITQR	0	1	Unmodified	1176.6251	0.62512073	485	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		18.633	18.633	2	3.2325E-06	11512	DP1063-9	138.4	113.62			1.0635	1.1125	NaN	1	0	Median	17917000	8728200	9189000	881	485	839	1837	3829;3830	3830		2	9606
FNLTGLNEQVPHYR	0	1	Unmodified	1686.8478	0.84780346	307	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	5	0					1	19.048	19.048	3	0.0071986	12444	DP1063-10	90.759	55.456			NaN	NaN	NaN	0	0	Median	4356800	0	4356800	882	307	840	1838	3831	3831		1	9606
FNPFVTSDR	0	1	Unmodified	1081.5193	0.51925868	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	0	5	0					1	18.84	18.84	2	0.00098925	12106	DP1063-10	104.06	81.926			9.6784	6.9806	NaN	1	0	Median	73618000	7002000	66616000	883	255	841	1839	3832;3833;3834;3835	3833		4	9606
FNPIETFLLGSCASDR	0	1	Unmodified	1825.8669	0.86688392	534	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	3.5	0.5			1	1		24.614	24.614	2	0.0010745	19001	DP1063-8	127.37	71.597			NaN	NaN	NaN	0	0	Median	6877300	0	6877300	884	534	842	1840;1841	3836;3837;3838	3836		3	9606
FPGDSVVTGR	0	1	Unmodified	1033.5193	0.51925868	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.228	17.228	2	2.0567E-09	9651	DP1063-8	166.3	124.01			0.88692	0.92336	14.495	2	0	Median	201700000	111570000	90124000	885	95	843	1842;1843	3839;3840;3841;3842;3843;3844;3845;3846	3840		8	9606
FPGQLNADLR	0	1	Unmodified	1129.588	0.58800695	311;109;373;366;414	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q13509;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	0	3.5	0.5			1	1		18.225	18.225	2	8.1141E-09	10912	DP1063-9	159.28	106.34			3.279	3.4137	2.4198	2	0	Median	519560000	107050000	412510000	886	109;311;366;373;414	844	1844;1845	3847;3848;3849;3850;3851;3852;3853;3854;3855	3855		9	9606
FPGQLNADLRK	1	1	Unmodified	1257.683	0.68296996	311;109;373;366;414	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q13509;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	1	3.33	0.471			2	1		16.486	16.486	2;3	1.0373E-05	8672	DP1063-8	123.51	83.498			4.2738	4.2972	20.8	2	0	Median	299460000	52542000	246920000	887	109;311;366;373;414	845	1846;1847;1848	3856;3857;3858;3859	3857		3	9606
FPGYDSESKEFNAEVHR	1	1	Unmodified	2010.9072	0.90716883	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	4	0				1		17.37	17.37	3	0.0080505	9744	DP1063-9	85.988	37.461			NaN	NaN	NaN	0	0	Median	9985100	0	9985100	888	214	846	1849	3860	3860		1	9606
FPSLLTHNENMVAK	1	0	Oxidation (M)	1615.8028	0.8028271	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					2	17.448	17.448	2;3	0.00042399	10102	DP1063-10	94.547	94.547			8.8207	5.2327	7.0239	2	0	Median	134760000	12673000	122090000	889	295	847	1850;1851	3861;3862;3863;3864;3865;3866;3867	3862	351	7	9606
FPSLLTHNENMVAK	1	0	Unmodified	1599.8079	0.80791248	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					2	18.378	18.378	2;3	0.0013305	11567	DP1063-10	129	84.387			NaN	NaN	NaN	0	0	Median	21260000	0	21260000	890	295	847	1852;1853	3868;3869;3870;3871	3870		4	9606
FQAQSLGTTYIYDIPEMFR	0	1	Oxidation (M)	2295.0882	0.088169665	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.17	0.373	5	1				24.064	24.064	2;3	7.6568E-13	14919	DP1063-6	178.68	178.68			0.89752	0.90231	1.3718	3	0	Median	493080000	259740000	233340000	891	355	848	1854;1855;1856;1857;1858;1859	3872;3873;3874;3875;3876;3877;3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888;3889	3875	421	18	9606
FQAQSLGTTYIYDIPEMFR	0	1	Unmodified	2279.0933	0.093255043	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				24.456	24.456	2	1.7692E-05	18870	DP1063-7	148.48	148.48			0.78897	0.81807	NaN	1	0	Median	15548000	9419400	6128900	892	355	848	1860;1861;1862	3890;3891;3892;3893;3894;3895	3893		6	9606
FQDTAEALAAFTALMEGK	1	0	Unmodified	1912.9241	0.92406445	571	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			25.882	25.882	2	0.0014226	20469	DP1063-8	119.31	83.717			NaN	NaN	NaN	0	0	Median	6152900	0	6152900	893	571	849	1863	3896	3896		1	9606
FQEAGELYNR	0	1	Unmodified	1225.5728	0.57275081	382	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					16.73	16.73	2	0.0067994	7077	DP1063-6	125.82	67.587			NaN	NaN	NaN	0	0	Median	4136500	0	4136500	894	382	850	1864	3897;3898	3897		2	9606
FQMTFQFSIWDK	1	0	Oxidation (M)	1592.7334	0.73335055	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2	0		1				22.396	22.396	2	0.0044178	16203	DP1063-7	129.89	97.635			NaN	NaN	NaN	0	0	Median	10774000	0	10774000	895	418	851	1865	3899;3900	3899	517	2	9606
FQTMEEK	1	0	Unmodified	911.40587	0.4058684	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		14.318	14.318	2	0.0023338	5659	DP1063-9	122.13	36.822			NaN	NaN	NaN	0	0	Median	12179000	0	12179000	896	201	852	1866	3901;3902	3901		2	9606
FREDHPDLIQNAK	1	1	Unmodified	1581.79	0.78995423	146	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	2	0		1				15.168	15.168	3	0.0047679	6577	DP1063-7	96.059	60.402			NaN	NaN	NaN	0	0	Median	34838000	0	34838000	897	146	853	1867	3903;3904	3904		2	9606
FSPNSSNPIIVSCGWDK	1	0	Unmodified	1906.8883	0.88834765	305	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		20.141	20.141	2	0.013837	13492	DP1063-9	92.265	55.418			NaN	NaN	NaN	0	0	Median	10107000	0	10107000	898	305	854	1868	3905;3906;3907	3905		3	9606
FSQLAEAYEVLSDEVK	1	0	Unmodified	1826.8938	0.89381018	473	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	4	0				1		23.365	23.365	2	0.0052706	17634	DP1063-9	96.371	41.671			NaN	NaN	NaN	0	0	Median	0	0	0	899	473	855	1869	3908	3908		1	9606
FSSCGGGGGSFGAGGGFGSR	0	1	Unmodified	1764.7274	0.72743033	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.75	1.48	1	1	1		1	17.695	17.695	2	5.9938E-36	8270	DP1063-6	212.03	200.39		+	NaN	NaN	NaN	0	0	Median	144030000	144030000	0	900	88	856	1870;1871;1872;1873	3909;3910;3911;3912;3913;3914;3915;3916	3913		8	9606
FSSSSGYGGGSSR	0	1	Unmodified	1234.5214	0.52144352	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	1.58	1	1		1	1	13.883	13.883	2	1.0861E-13	3514	DP1063-6	210.08	181.9		+	NaN	NaN	NaN	0	0	Median	73265000	73265000	0	901	19	857	1874;1875;1876;1877	3917;3918;3919;3920;3921;3922;3923;3924	3920		8	9606
FSSSTEQSSASR	0	1	Unmodified	1272.5582	0.55822296	39	Q92997;O14641	DVL3;DVL2	Segment polarity protein dishevelled homolog DVL-3;Segment polarity protein dishevelled homolog DVL-2	yes	no	0	0	0	2.5	0.5		1	1			12.939	12.939	2	0.00029334	4128	DP1063-8	147.75	78.156			NaN	NaN	NaN	0	0	Median	2276700	0	2276700	902	39	858	1878;1879	3925;3926;3927	3926		3	9606
FSSVTVSTIDEEEEEIEAR	0	1	Unmodified	2168.9961	0.996103	518	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		21.029	21.029	2	8.0373E-16	14760	DP1063-9	170.95	142.52			NaN	NaN	NaN	0	0	Median	22248000	0	22248000	903	518	859	1880	3928;3929	3929		2	9606
FSVCVLGDQQHCDEAK	1	0	Unmodified	1891.8193	0.8192818	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					2	17.529	17.529	2;3	2.3058E-143	10419	DP1063-10	329.46	307.13			10.49	6.223	11.8	2	0	Median	152310000	15455000	136850000	904	295	860	1881;1882	3930;3931;3932;3933;3934;3935	3934		6	9606
FSWFVDDVEVNTATTKPR	1	1	Unmodified	2111.0324	0.032369346	6	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	4	0				1		20.928	20.928	3	0.022308	14620	DP1063-9	78.021	48.048		+	NaN	NaN	NaN	0	0	Median	4779700	4779700	0	905	6	861	1883	3936	3936		1	
FTLAGHTK	1	0	Unmodified	873.47085	0.47085192	261	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	4	0				1		14.071	14.071	2	0.035754	5372	DP1063-9	92.47	61.967			NaN	NaN	NaN	0	0	Median	7394000	0	7394000	906	261	862	1884	3937	3937		1	9606
FTPGTFTNQIQAAFR	0	1	Unmodified	1697.8526	0.85255449	116	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	4	0				1		21.928	21.928	2	3.1639E-10	15912	DP1063-9	175.49	150.79			1.6802	1.7575	NaN	1	0	Median	18482000	5659500	12823000	907	116	863	1885	3938	3938		1	9606
FTPGTFTNQIQAAFREPR	0	2	Unmodified	2080.049	0.049022463	116	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	1	4	0				1		21.031	21.031	3	0.0019559	14689	DP1063-9	103.79	71.908			NaN	NaN	NaN	0	0	Median	9904700	0	9904700	908	116	864	1886	3939	3939		1	9606
FTQTSGETTDADKEPAGEDK	2	0	Unmodified	2125.9288	0.92875171	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.25	0.433	3	1				13.825	13.825	2;3	4.7233E-12	4732	DP1063-7	161.95	130.63			NaN	NaN	NaN	0	0	Median	27777000	0	27777000	909	211	865	1887;1888;1889;1890	3940;3941;3942;3943;3944;3945	3945		6	9606
FTQTSGETTDADKEPAGEDKGIK	3	0	Unmodified	2424.1292	0.12924244	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1	0	1					14.156	14.156	4	0.0011455	3860	DP1063-6	91.64	66.686			NaN	NaN	NaN	0	0	Median	4922100	0	4922100	910	211	866	1891	3946;3947	3947		2	9606
FTWSHLSEHLAFER	0	1	Unmodified	1758.8478	0.84780346	558	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		19.47	19.47	3	0.0075948	12715	DP1063-9	89.992	64.539			NaN	NaN	NaN	0	0	Median	11924000	0	11924000	911	558	867	1892	3948	3948		1	9606
FVDGLMIHSGDPVNYYVDTAVR	0	1	Oxidation (M)	2483.1791	0.17910994	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				2		20.807	20.807	2;3	2.6521999999999997E-26	14413	DP1063-9	194.01	155.01			2.3963	2.5066	NaN	1	0	Median	88258000	24625000	63633000	912	164	868	1893;1894	3949;3950;3951;3952	3951	193	4	9606
FVIATSTK	1	0	Unmodified	865.49092	0.49091866	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.09	16.09	2	0.0025231	8053	DP1063-9	113.89	63.864			11.549	11.87	NaN	1	0	Median	168950000	13835000	155120000	913	336	869	1895	3953;3954	3953		2	9606
FVINYDYPNSSEDYIHR	0	1	Unmodified	2130.9647	0.96468371	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.508	19.508	3	2.0533E-06	12624	DP1063-8	149.22	113.51			NaN	NaN	NaN	0	0	Median	62911000	0	62911000	914	148	870	1896	3955	3955		1	9606
FVLNLIK	1	0	Unmodified	845.53747	0.53747492	459	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		20.652	20.652	2	0.015158	14195	DP1063-9	106.76	70.205			NaN	NaN	NaN	0	0	Median	23493000	0	23493000	915	459	871	1897	3956	3956		1	9606
FVMEVEVDGQK	1	0	Oxidation (M)	1295.6068	0.60675306	351	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	1	0	2	0		1				16.477	16.477	2	0.027094	8293	DP1063-7	96.331	67.413			NaN	NaN	NaN	0	0	Median	22400000	0	22400000	916	351	872	1898	3957;3958	3958	410	2	9606
FVNLISER	0	1	Unmodified	976.53418	0.53418046	583	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				18.587	18.587	2	0.0035656	11214	DP1063-7	122.74	85.184			NaN	NaN	NaN	0	0	Median	20797000	0	20797000	917	583	873	1899	3959;3960	3959		2	9606
FVNVVPTFGK	1	0	Unmodified	1106.6124	0.61243078	292	P62861	FAU	40S ribosomal protein S30	yes	yes	0	0	0	5	0					1	19.864	19.864	2	0.00016665	13509	DP1063-10	118.71	100.8			4.1328	2.4517	NaN	1	0	Median	21454000	4507500	16946000	918	292	874	1900	3961;3962;3963;3964	3961		4	9606
FVPFAAVAAANCINIPLMR	0	1	Oxidation (M)	2090.0805	0.080522288	523	Q9H9B4;Q9BWM7	SFXN1;SFXN3	Sideroflexin-1;Sideroflexin-3	yes	no	0	1	0	4	0				1		23.193	23.193	3	0.010537	17428	DP1063-9	53.395	53.395			1.3235	1.3845	NaN	1	0	Median	6686200	2543100	4143100	919	523	875	1901	3965;3966	3966	592	2	9606
FVVMVTPEDLK	1	0	Oxidation (M)	1292.6686	0.66862503	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1.57	1.05	5	1		1		24.825	24.825	2	0.00010202	10746	DP1063-6	118.71	71.525			0.94826	0.97091	2.4742	3	0	Plateau	446730000	223300000	223420000	920	355;38	876	1902;1903;1904;1905;1906;1907;1908	3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982	3969	36	16	9606
FVVMVTPEDLK	1	0	Unmodified	1276.6737	0.67371041	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.5	0.5	1	1				20.764	20.764	2	1.3685E-06	12307	DP1063-6	153.24	108.49			0.84274	0.86402	6.9196	2	0	Median	119370000	63519000	55847000	921	355;38	876	1909;1910	3983;3984;3985;3986;3987;3988;3989;3990;3991	3986		9	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	0	1	Unmodified	3101.4003	0.40027234	109	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		20.699	20.699	3	9.2569E-18	14179	DP1063-8	149.64	32.048			2.6734	2.7701	NaN	1	0	Median	108480000	19819000	88666000	922	109	877	1911;1912	3992;3993;3994	3993		3	9606
FWEVISDEHGIDPTGTYHGDSDLQLER	0	1	Unmodified	3115.4159	0.4159224	311	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3	0			2			20.693	20.693	3;4	3.8299E-15	14061	DP1063-8	149.07	126.41			NaN	NaN	NaN	0	0	Median	234270000	82144000	152130000	923	311	878	1913;1914	3995;3996;3997	3996		3	9606
FWYFVSQLK	1	0	Unmodified	1216.6281	0.62808085	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	22.458	22.458	2	0.0010391	16752	DP1063-10	106.04	106.04			10.754	6.3797	NaN	1	0	Median	29474000	3007600	26466000	924	335	879	1915	3998;3999;4000	3999		3	9606
FYEEVHDLERK	1	1	Unmodified	1463.7045	0.70449327	487;245	Q99733;P55209	NAP1L4;NAP1L1	Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1	no	no	0	0	1	3	0			1			15.816	15.816	3	0.033665	7869	DP1063-8	68.355	32.678			NaN	NaN	NaN	0	0	Median	13153000	0	13153000	925	487;245	880	1916	4001	4001		1	9606
FYNLVLLPR	0	1	Unmodified	1133.6597	0.65971533	374	Q13895	BYSL	Bystin	yes	yes	0	0	0	4	0				1		21.899	21.899	2	0.030472	15866	DP1063-9	89.55	50.587			NaN	NaN	NaN	0	0	Median	4413000	0	4413000	926	374	881	1917	4002	4002		1	9606
FYVPPTQEDGVDPVEAFAQNVLSK	1	0	Unmodified	2649.2962	0.29624819	346	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	2	0		1				24.62	24.62	2	0.030424	19169	DP1063-7	67.902	36.814			NaN	NaN	NaN	0	0	Median	4642300	0	4642300	927	346	882	1918	4003	4003		1	9606
GAAASALGEDSGGGSPMK	1	0	Oxidation (M)	1577.6991	0.69914989	591				yes	yes	0	1	0	3	0			1			13.62	13.62	2	0.0078705	4953	DP1063-8	104.07	68.162	+		NaN	NaN	NaN	0	0	Median	3840600	3840600	0	928	591	883	1919	4004	4004	644	1	9606
GACLLPK	1	0	Unmodified	757.41565	0.41564523	12	CON__P02769			yes	yes	0	0	0	1	0	1					15.895	15.895	2	0.05201	6037	DP1063-6	85.306	43.804		+	NaN	NaN	NaN	0	0	Median	0	0	0	929	12	884	1920	4005	4005		1	
GADQKPTSADCAVR	1	1	Unmodified	1474.6834	0.68344025	447	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	1	2	0		1				12.845	12.845	3	0.0026207	3506	DP1063-7	102.52	80.864			NaN	NaN	NaN	0	0	Median	5908900	0	5908900	930	447	885	1921	4006;4007	4006		2	9606
GADSELSTVPSVTK	1	0	Unmodified	1389.6987	0.69873919	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				17.117	17.117	2	0.018209	9134	DP1063-7	89.356	32.441			NaN	NaN	NaN	0	0	Median	21204000	0	21204000	931	212	886	1922	4008	4008		1	9606
GAEAANVTGPDGVPVEGSR	0	1	Unmodified	1781.8544	0.85440498	144	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	3.5	0.5			1	1		16.665	16.665	2	7.073900000000001E-34	8917	DP1063-8	222.75	173.29			NaN	NaN	NaN	0	0	Median	31384000	0	31384000	932	144	887	1923;1924	4009;4010;4011;4012	4009		4	9606
GAEAANVTGPGGVPVQGSK	1	0	Unmodified	1694.8588	0.85876208	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.869	15.869	2	8.1578E-19	7655	DP1063-9	192.4	146.64			7.6713	7.8848	NaN	1	0	Median	77482000	9687400	67795000	933	306	888	1925	4013;4014;4015	4013		3	9606
GAETELVR	0	1	Unmodified	873.4556	0.45559579	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				14.967	14.967	2	0.05327	6308	DP1063-7	84.244	31.561			NaN	NaN	NaN	0	0	Median	24841000	0	24841000	934	212	889	1926	4016	4016		1	9606
GAFGKPQGTVAR	1	1	Unmodified	1187.6411	0.64110515	177	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	1	5	0					1	13.699	13.699	3	0.0020723	5692	DP1063-10	110.93	74.614			NaN	NaN	NaN	0	0	Median	63831000	0	63831000	935	177	890	1927	4017;4018	4018		2	9606
GAGQQQSQEMMEVDR	0	1	2 Oxidation (M)	1724.7094	0.709397	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	2	0	4	0				1		13.373	13.373	2	4.9446E-08	4411	DP1063-9	158.08	128.31			NaN	NaN	NaN	0	0	Median	21824000	0	21824000	936	405	891	1928	4019;4020	4020	500;501	2	9606
GAGQQQSQEMMEVDR	0	1	Oxidation (M)	1708.7145	0.71448238	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				2		14.541	14.541	2	0.0016286	5991	DP1063-9	128.28	87.119			NaN	NaN	NaN	0	0	Median	5037400	0	5037400	937	405	891	1929;1930	4021;4022;4023	4021	500;501	3	9606
GAIDDLQQGELEAFIQNLNLAK	1	0	Unmodified	2399.2333	0.233254	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				25.835	25.835	2	3.4879E-19	20529	DP1063-7	183.96	116.44			NaN	NaN	NaN	0	0	Median	4061000	0	4061000	938	338	892	1931	4024;4025;4026;4027	4025		4	9606
GALQGSAWQVSSEDVR	0	1	Unmodified	1688.8118	0.81181188	583	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				18.605	18.605	2	6.3491E-06	11217	DP1063-7	151.98	106.32			NaN	NaN	NaN	0	0	Median	11936000	0	11936000	939	583	893	1932	4028;4029	4028		2	9606
GALQNIIPASTGAAK	1	0	Unmodified	1410.7831	0.78307794	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.671	18.671	2	0.040994	11438	DP1063-9	55.98	55.98			0.52155	0.53607	NaN	1	0	Median	31265000	19742000	11523000	940	89	894	1933	4030;4031	4030		2	9606
GALQYLVPILTQTLTK	1	0	Unmodified	1758.0291	0.029121869	386	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		2				25.536	25.536	2;3	0.0040241	20194	DP1063-7	69.045	69.045			1.5166	1.5627	NaN	1	0	Median	6163800	1388900	4774900	941	386	895	1934;1935	4032;4033;4034;4035	4033		4	9606
GANAVGYTNYPDNVVFK	1	0	Unmodified	1827.8792	0.87916317	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			19.502	19.502	2	1.0738E-61	12402	DP1063-7	253.97	218.31			0.87813	0.89458	5.678	2	0	Median	870480000	436140000	434340000	942	130	896	1936;1937;1938	4036;4037;4038;4039;4040;4041;4042;4043;4044;4045	4039		10	9606
GAPAAATAPAPTAHK	1	0	Unmodified	1330.6993	0.69934831	465	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	4	0				1		12.988	12.988	2	0.00017131	4016	DP1063-9	139.31	101.59			NaN	NaN	NaN	0	0	Median	3797800	0	3797800	943	465	897	1939	4046;4047	4046		2	9606
GASQAGMTGYGMPR	0	1	2 Oxidation (M)	1414.5969	0.59693343	196	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	2	0	5	0					1	13.676	13.676	2	0.016268	5663	DP1063-10	97.813	78.551			NaN	NaN	NaN	0	0	Median	13546000	0	13546000	944	196	898	1940	4048;4049	4048	218;219	2	9606
GATQQILDEAER	0	1	Unmodified	1329.6525	0.6524577	317	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			17.664	17.664	2	0.00043385	10115	DP1063-8	143.96	80.776			NaN	NaN	NaN	0	0	Median	31468000	0	31468000	945	317	899	1941	4050;4051	4051		2	9606
GATYGKPVHHGVNQLK	2	0	Unmodified	1704.906	0.90598704	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	1	5	0					2	12.742	12.742	3;4	0.00021011	4724	DP1063-10	101.32	80.514			11.456	11.676	9.7967	2	0	Median	61052000	6144300	54908000	946	257	900	1942;1943	4052;4053;4054;4055;4056;4057	4053		6	9606
GAVDALAAALAHISGASSFEPR	0	1	Unmodified	2110.0807	0.080716522	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		2				24.532	24.532	2;3	2.9388999999999998E-52	18994	DP1063-7	242.01	200.96			NaN	NaN	NaN	0	0	Median	34981000	0	34981000	947	490	901	1944;1945	4058;4059;4060;4061	4060		4	9606
GAVDGGLSIPHSTK	1	0	Unmodified	1337.6939	0.69392858	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				2		16.046	16.046	2;3	0.0007837	8014	DP1063-9	134.3	89.879			10.656	10.952	NaN	1	0	Median	110030000	8237600	101790000	948	214	902	1946;1947	4062;4063;4064;4065	4065		4	9606
GAVEALAAALAHISGATSVDQR	0	1	Unmodified	2107.1022	0.10218025	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2.4	0.8		4		1		24.005	24.005	2;3;4	2.3591E-149	18332	DP1063-7	344.18	306			16.124	16.411	NaN	1	0	Median	114830000	4776700	110050000	949	531	903	1948;1949;1950;1951;1952	4066;4067;4068;4069;4070;4071;4072;4073;4074	4069		9	9606
GAVECCPNCR	0	1	Unmodified	1221.4689	0.46889614	183	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				1		13.156	13.156	2	0.032801	4214	DP1063-9	86.833	63.79			NaN	NaN	NaN	0	0	Median	4016300	0	4016300	950	183	904	1953	4075	4075		1	9606
GAVEIIFK	1	0	Unmodified	875.51165	0.5116541	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.262	19.262	2	0.0027296	12194	DP1063-8	108.09	8.7125			0.91119	0.92708	17.385	2	0	Median	330450000	167060000	163400000	951	95	905	1954;1955	4076;4077;4078;4079;4080	4079		5	9606
GAWSNVLR	0	1	Unmodified	901.477	0.47699993	93;133;132	P05141;P12236;P12235	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	2.5	1.5	1			1		18.357	18.357	2	0.003018	11050	DP1063-9	114.59	65.825			2.471	2.5736	0.17095	2	0	Median	152320000	44924000	107390000	952	93;133;132	906	1956;1957	4081;4082;4083;4084;4085;4086	4086		6	9606
GCAVVEFK	1	0	Unmodified	908.44259	0.44258826	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2	0		1				16.462	16.462	2	0.015088	8269	DP1063-7	79.116	54.484			1.1127	1.1465	NaN	1	0	Median	71229000	34809000	36420000	953	236	907	1958	4087;4088	4087		2	9606
GCEVVVSGK	1	0	Unmodified	933.45897	0.45896661	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		13.809	13.809	2	0.022511	5020	DP1063-9	71.379	29.727			3.1953	3.2843	NaN	1	0	Median	18357000	5129300	13228000	954	164	908	1959	4089;4090	4089		2	9606
GCGTVLLSGPR	0	1	Unmodified	1115.5757	0.5757277	342	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	16.972	16.972	2	0.0066302	9681	DP1063-10	125.16	94.994			NaN	NaN	NaN	0	0	Median	115160000	0	115160000	955	342	909	1960	4091;4092	4092		2	9606
GCIVDANLSVLNLVIVK	1	0	Unmodified	1826.0336	0.03355532	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		24.264	24.264	2	0.00035899	18698	DP1063-9	135.6	112.48			NaN	NaN	NaN	0	0	Median	4585800	0	4585800	956	284	910	1961	4093;4094	4094		2	9606
GCMEEKPQEVQTSR	1	1	Oxidation (M)	1693.74	0.73996885	472	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	1	1	2	0		1				12.93	12.93	3	0.033822	3590	DP1063-7	83.729	64.63			NaN	NaN	NaN	0	0	Median	4858700	0	4858700	957	472	911	1962	4095	4095		1	9606
GCTATLGNFAK	1	0	Unmodified	1138.5441	0.54409322	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.877	16.877	2	0.014216	9083	DP1063-9	102.62	74.609			NaN	NaN	NaN	0	0	Median	17783000	17783000	0	958	141	912	1963	4096;4097	4096		2	9606
GDEELDSLIK	1	0	Unmodified	1117.5503	0.55028404	121	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	19.405	19.405	2	0.00034072	12918	DP1063-10	108.74	51.462			2.3164	1.3742	NaN	1	0	Median	16286000	4220300	12066000	959	121	913	1964	4098;4099;4100	4098		3	9606
GDFCIQVGR	0	1	Unmodified	1050.4917	0.49166372	58	O60361;P22392;P15531	NME2P1;NME2;NME1	Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A	yes	no	0	0	0	5	0					1	18.117	18.117	2	0.014608	11173	DP1063-10	77.058	48.884			0.88948	0.64154	NaN	1	0	Median	13634000	7178800	6455200	960	58	914	1965	4101;4102	4101		2	9606
GDGPICLVLAPTR	0	1	Unmodified	1367.7231	0.72312022	148;469	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			20.741	20.741	2	0.0038733	14069	DP1063-8	113.63	53.61			NaN	NaN	NaN	0	0	Median	40680000	0	40680000	961	469;148	915	1966	4103;4104	4103		2	9606
GDHAWSFLK	1	0	Acetyl (Protein N-term)	1101.5243	0.52434406	132	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	1	0	0	4	0				1		20.685	20.685	2	0.013664	14256	DP1063-9	84.615	40.168			1.7885	1.8383	NaN	1	0	Median	7259000	3032300	4226800	962	132	916	1967	4105	4105		0	9606
GDSVIVVLR	0	1	Unmodified	956.56548	0.56548059	278	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	18.719	18.719	2	0.0071442	12013	DP1063-10	85.064	42.195			5.3094	3.8295	NaN	1	0	Median	21778000	3396400	18381000	963	278	917	1968	4106;4107	4107		2	9606
GDTPGHATPGHGGATSSAR	0	1	Unmodified	1732.7877	0.7877224	69	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				12.597	12.597	3	0.039324	3181	DP1063-7	67.644	49.727			NaN	NaN	NaN	0	0	Median	4114500	0	4114500	964	69	918	1969	4108	4108		1	9606
GDTSEDASIHR	0	1	Acetyl (Protein N-term)	1228.532	0.53200821	467	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	1	0	0	2	0		1				14.397	14.397	2	0.016216	5495	DP1063-7	81.95	49.596			NaN	NaN	NaN	0	0	Median	5536300	0	5536300	965	467	919	1970	4109	4109		1	9606
GEAVLRPGLDAEPELSPEEQR	0	2	Unmodified	2291.1394	0.13935361	495	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	1	5	0					1	18.288	18.288	3	0.0019413	11376	DP1063-10	95.957	65.805			NaN	NaN	NaN	0	0	Median	10395000	0	10395000	966	495	920	1971	4110	4110		1	9606
GEKDIPGLTDTTVPR	1	1	Unmodified	1597.8312	0.83115034	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	1	4	0				1		17.32	17.32	3	0.0080225	9655	DP1063-9	85.469	61.115			NaN	NaN	NaN	0	0	Median	8431700	0	8431700	967	284	921	1972	4111;4112	4112		2	9606
GENSWFSTQVDTVATK	1	0	Unmodified	1768.8268	0.82679325	112	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				20.156	20.156	2	0.015345	13341	DP1063-7	91.093	57.776			NaN	NaN	NaN	0	0	Median	16583000	0	16583000	968	112	922	1973	4113	4113		1	9606
GEVAYIDGQVLVPPGYGQDVR	0	1	Unmodified	2231.1222	0.12224699	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					21.182	21.182	2	0.0093676	12789	DP1063-6	91.657	64.651			NaN	NaN	NaN	0	0	Median	3318100	0	3318100	969	179	923	1974	4114	4114		1	9606
GFAFVQYVNER	0	1	Unmodified	1328.6513	0.65133548	111	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.556	20.556	2	1.0384999999999999E-22	14077	DP1063-9	199.7	199.7			3.2277	3.3763	NaN	1	0	Median	68146000	15633000	52512000	970	111	924	1975	4115;4116;4117;4118	4116		4	9606
GFAFVTFDDHDSVDK	1	0	Unmodified	1698.7526	0.75256567	118	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		20.208	20.208	3	3.936E-16	13619	DP1063-9	184.98	174.7			11.423	11.74	NaN	1	0	Median	19446000	1401500	18045000	971	118	925	1976	4119;4120	4119		2	9606
GFAFVTFDDHDSVDKIVIQK	2	0	Unmodified	2280.1426	0.14264808	118	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		20.766	20.766	4	0.0010259	14357	DP1063-9	73.735	18.97			5.4436	5.7585	NaN	1	0	Median	19264000	4368400	14896000	972	118	926	1977	4121;4122	4122		2	9606
GFDALQYQEHLDYEIIQSLNPEFNK	1	0	Unmodified	3010.4349	0.43486693	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				25.002	25.002	3	3.3176E-06	19564	DP1063-7	113.65	87.173			NaN	NaN	NaN	0	0	Median	8697000	0	8697000	973	514	927	1978	4123	4123		1	9606
GFEVVYMTEPIDEYCVQQLK	1	0	Oxidation (M)	2463.1338	0.13379923	113	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		1				21.639	21.639	2	5.6403E-07	15331	DP1063-7	142.57	15.2			NaN	NaN	NaN	0	0	Median	8993100	0	8993100	974	113	928	1979	4124;4125	4124	125	2	9606
GFGFVDFNSEEDAK	1	0	Unmodified	1560.6733	0.67325272	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	3.5	1.12		1	1	1	1	21.131	21.131	2	1.299E-15	14637	DP1063-7	188.99	166.3			13.826	14.085	38.282	2	0	Median	283830000	15785000	268040000	975	155	929	1980;1981;1982;1983	4126;4127;4128;4129;4130;4131;4132	4127		7	9606
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	2	2 Oxidation (M)	2858.3116	0.31159745	161	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	2	1	4	0				1		20.635	20.635	4	0.039188	14181	DP1063-9	41.166	23.665			NaN	NaN	NaN	0	0	Median	8762500	0	8762500	976	161	930	1984	4133	4133		1	9606
GFGFVTYATVEEVDAAMNAR	0	1	Oxidation (M)	2162.9943	0.99426928	118	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	0	4	0				1		22.602	22.602	2	8.5899E-11	16708	DP1063-9	164.53	164.53			6.788	7.1005	NaN	1	0	Median	22629000	3259200	19370000	977	118	931	1985	4134;4135;4136	4135	131	3	9606
GFGFVTYATVEEVDAAMNARPHK	1	1	Oxidation (M)	2525.2009	0.20090801	118	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	4	0				2		20.497	20.497	3;4	3.0184E-10	13968	DP1063-9	113.49	101.19			5.4268	5.1321	15.847	2	0	Median	65633000	10617000	55016000	978	118	932	1986;1987	4137;4138;4139;4140;4141	4141	131	5	9606
GFGFVYFQNHDAADK	1	0	Unmodified	1714.774	0.77396981	357	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	4	0				1		19.72	19.72	3	0.0018485	12957	DP1063-9	108.97	86.365			NaN	NaN	NaN	0	0	Median	4390600	0	4390600	979	357	933	1988	4142	4142		1	9606
GFSGGMKDMYDQVLK	2	0	2 Oxidation (M)	1706.7644	0.76439269	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	2	1	1.33	0.471	2	1				16.519	16.519	2;3	0.00029838	6752	DP1063-6	106.26	106.26			0.98949	1.0068	0.005384	2	0	Median	305620000	146270000	159350000	980	355;38	934	1989;1990;1991	4143;4144;4145;4146;4147;4148;4149;4150;4151;4152	4147	34;37	10	9606
GFSGGMKDMYDQVLK	2	0	Oxidation (M)	1690.7695	0.76947806	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	1	1	0	2					17.678	17.678	2;3	0.0035198	8370	DP1063-6	106.16	62.739			1.0015	1.019	NaN	1	0	Median	24678000	11520000	13159000	981	355;38	934	1992;1993	4153;4154	4154	34;37	2	9606
GFSLEELR	0	1	Unmodified	949.4869	0.48689592	174	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					1	19.787	19.787	2	0.0022584	13402	DP1063-10	104.21	67.508			8.8376	6.3742	NaN	1	0	Median	98682000	8599000	90083000	982	174	935	1994	4155;4156;4157;4158	4156		4	9606
GFSSGSAVVSGGSR	0	1	Unmodified	1253.6	0.60002819	20;26	P35908;CON__P35908v2;CON__P35908;CON__Q3TTY5	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	2.75	1.48	1	1	1		1	15.422	15.422	2	8.3031E-11	7282	DP1063-8	181.87	132.45		+	NaN	NaN	NaN	0	0	Median	146180000	146180000	0	983	20;26	936	1995;1996;1997;1998	4159;4160;4161;4162;4163;4164;4165;4166	4166		8	9606
GFVDDIIQPSSTR	0	1	Unmodified	1433.7151	0.71505795	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	20.16	20.16	2	3.1077E-24	13352	DP1063-8	212.21	112.52			1.0376	0.90123	23.706	2	0	Median	83400000	40566000	42833000	984	95	937	1999;2000;2001	4167;4168;4169;4170;4171;4172	4169		6	9606
GGAEQFMEETER	0	1	Oxidation (M)	1398.5722	0.57215846	488	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	3	0			1			15.529	15.529	2	6.3622E-06	7433	DP1063-8	159.09	111.13			NaN	NaN	NaN	0	0	Median	13869000	0	13869000	985	488	938	2002	4173;4174	4173	568	2	9606
GGAYYPVTVK	1	0	Unmodified	1053.5495	0.54949617	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.765	16.765	2	0.0020049	9060	DP1063-8	90.709	58.773			1.0752	1.0829	NaN	1	0	Median	357640000	174780000	182860000	986	524	939	2003	4175;4176;4177;4178	4175		4	9606
GGDDLGTEIANTLYR	0	1	Unmodified	1593.7635	0.76346471	390	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				1		21.86	21.86	2	7.5111E-17	15773	DP1063-9	190.53	146.21			NaN	NaN	NaN	0	0	Median	13139000	0	13139000	987	390	940	2004	4179	4179		1	9606
GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR	0	1	Unmodified	2398.0111	0.011133407	20	P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0.816	1	1	1			20.901	20.901	2	5.7131E-28	12471	DP1063-6	181.86	147.86		+	NaN	NaN	NaN	0	0	Median	26867000	26867000	0	988	20	941	2005;2006;2007	4180;4181;4182;4183;4184	4181		5	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	0	1	Unmodified	2382.9446	0.94456998	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.57	1.18	2	1	2	2		14.971	14.971	2;3	0	6704	DP1063-8	511.31	361.7		+	NaN	NaN	NaN	0	0	Median	98723000	98723000	0	989	88	942	2008;2009;2010;2011;2012;2013;2014	4185;4186;4187;4188;4189;4190;4191;4192;4193;4194;4195;4196	4192		12	9606
GGGGNFGPGPGSNFR	0	1	Unmodified	1376.6222	0.62216062	161	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.824	16.824	2	0.0012933	8996	DP1063-9	110.39	80.914			1.8489	1.934	NaN	1	0	Median	29624000	8357500	21267000	990	161	943	2015	4197;4198	4197		2	9606
GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR	0	1	Unmodified	2704.1538	0.15383448	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	1	1		1			20.832	20.832	2	1.5426E-81	14225	DP1063-8	242.59	211.48		+	NaN	NaN	NaN	0	0	Median	26934000	26934000	0	991	19	944	2016;2017	4199;4200;4201;4202	4201		4	9606
GGGHVAQIYAIR	0	1	Unmodified	1240.6677	0.66765425	269	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					2	15.974	15.974	2;3	0.00055417	8471	DP1063-10	91.549	91.549			5.3957	3.8917	6.5182	2	0	Median	87789000	14777000	73013000	992	269	945	2018;2019	4203;4204;4205;4206;4207	4204		5	9606
GGGPAGAGGEAPAALR	0	1	Unmodified	1307.6582	0.65821178	422	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		15.629	15.629	2	3.2403E-10	7428	DP1063-9	169.99	120.46			NaN	NaN	NaN	0	0	Median	12196000	0	12196000	993	422	946	2020	4208;4209	4209		2	9606
GGGQIIPTAR	0	1	Unmodified	968.54033	0.54032847	137;391	Q15029;P13639	EFTUD2;EEF2	116 kDa U5 small nuclear ribonucleoprotein component;Elongation factor 2	no	no	0	0	0	2	0		1				15.754	15.754	2	0.039736	7314	DP1063-7	61.962	23.802			1.9523	2.0264	NaN	1	0	Median	22557000	6941600	15615000	994	391;137	947	2021	4210	4210		1	9606
GGKPEPPAMPQPVPTA	1	0	Oxidation (M)	1588.7919	0.79192806	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	1	4	0				1		15.678	15.678	2	0.0022957	7436	DP1063-9	75.739	75.739			1.746	1.7946	NaN	1	0	Median	30958000	11847000	19111000	995	164	948	2022	4211;4212;4213;4214	4214	194	4	9606
GGNRFEPYANPTKR	1	2	Unmodified	1605.8012	0.80118762	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	2	2	0		1				14.517	14.517	4	0.029302	5721	DP1063-7	44.44	28.2			0.79605	0.83124	NaN	1	0	Median	22959000	10585000	12374000	996	236	949	2023	4215	4215		1	9606
GGPNIITLADIVKDPVSR	1	1	Unmodified	1864.0418	0.04181182	312	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	1	4	0				2		21.808	21.808	2;3	0.00014461	15716	DP1063-9	131.61	106.17			NaN	NaN	NaN	0	0	Median	10838000	0	10838000	997	312	950	2024;2025	4216;4217;4218	4217		3	9606
GGSGGGGSISGGGYGSGGGSGGR	0	1	Unmodified	1740.7412	0.74116614	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0.816	1	1	1			14.006	14.006	2	4.1372E-63	5400	DP1063-8	233.84	206.41		+	NaN	NaN	NaN	0	0	Median	22842000	22842000	0	998	20	951	2026;2027;2028	4219;4220;4221;4222;4223;4224	4223		6	9606
GGSGGGYGSGGGSRGGSGGGYGSGGGSGSGGGYSSGGGSRGGSGGGGVSSGGGSR	0	3	Unmodified	4231.7505	0.75046164	26	CON__Q3TTY5			yes	yes	0	0	2	1	0	1					42.878	42.878	3	0.046275	31064	DP1063-6	24.2	15.437		+	NaN	NaN	NaN	0	0	Median	0	0	0	999	26	952	2029	4225	4225		1	
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	1	0	Unmodified	3222.2743	0.27429656	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	1	1		1			15.194	15.194	3	1.1352E-43	6972	DP1063-8	180.17	177.98		+	NaN	NaN	NaN	0	0	Median	97156000	97156000	0	1000	19	953	2030;2031	4226;4227;4228;4229;4230;4231	4230		6	9606
GGSGGSYGGGGSGGGYGGGSGSR	0	1	Unmodified	1790.7204	0.72043069	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.5	1.12	1	1	1	1		13.684	13.684	2	1.9763E-144	4968	DP1063-8	330.35	181.01		+	NaN	NaN	NaN	0	0	Median	74826000	74826000	0	1001	19	954	2032;2033;2034;2035	4232;4233;4234;4235;4236;4237;4238;4239;4240;4241	4238		10	9606
GGSGSGPTIEEVD	0	0	Unmodified	1203.5255	0.52552585	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.404	17.404	2	0.024997	9861	DP1063-8	85.862	57.165			NaN	NaN	NaN	0	0	Median	0	0	0	1002	124	955	2036	4242	4242		1	9606
GGSWVVIDSSINPR	0	1	Unmodified	1485.7576	0.75759147	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.207	20.207	2	3.8095E-32	11480	DP1063-6	218.15	218.15			0.90917	0.81475	7.7906	3	0	Plateau	172300000	91080000	81221000	1003	355	956	2037;2038;2039;2040	4243;4244;4245;4246;4247;4248;4249;4250;4251;4252;4253;4254;4255;4256	4246		14	9606
GGVVNAAKEEHETDEK	2	0	Unmodified	1711.8013	0.80130678	43	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	1	2	0		1				12.927	12.927	3	0.0059432	3614	DP1063-7	90.229	59.231			NaN	NaN	NaN	0	0	Median	3567700	0	3567700	1004	43	957	2041	4257	4257		1	9606
GGVVNAAKEEHETDEKR	2	1	Unmodified	1867.9024	0.90241781	43	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	2	2	0		1				12.699	12.699	4	0.0022748	3342	DP1063-7	98.943	78.505			NaN	NaN	NaN	0	0	Median	7256000	0	7256000	1005	43	958	2042	4258	4258		1	9606
GHAGSVDSIAVDGSGTK	1	0	Unmodified	1556.7431	0.74306362	510	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	3	0			1			14.745	14.745	2	1.1822E-72	6492	DP1063-8	283.47	249.73			NaN	NaN	NaN	0	0	Median	9712700	0	9712700	1006	510	959	2043	4259;4260	4260		2	9606
GHALLILRPEELGFLR	0	2	Unmodified	1833.0625	0.062487683	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	2	0		1				21.135	21.135	3	1.121E-07	14587	DP1063-7	155.39	104.38			NaN	NaN	NaN	0	0	Median	58881000	0	58881000	1007	537	960	2044	4261;4262	4262		2	9606
GHENVEAAQAEYIEK	1	0	Unmodified	1686.7849	0.78492843	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4.33	0.745			1	2	3	15.591	15.591	2;3	2.4605000000000003E-71	7399	DP1063-9	262.48	244.74			0.86512	0.80222	31.121	4	0	Median	691070000	336910000	354160000	1008	95	961	2045;2046;2047;2048;2049;2050	4263;4264;4265;4266;4267;4268;4269;4270;4271;4272;4273;4274;4275	4273		13	9606
GHFGPINSVAFHPDGK	1	0	Unmodified	1678.8216	0.82158871	363	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				1		17.225	17.225	3	0.03135	9583	DP1063-9	73.593	39.752			NaN	NaN	NaN	0	0	Median	6438200	0	6438200	1009	363	962	2051	4276	4276		1	9606
GHLDAELDAYMAQTDPETND	0	0	Oxidation (M)	2220.9117	0.91172144	581	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				2		19.119	19.119	2	8.9606E-13	12174	DP1063-9	149.57	130.75			NaN	NaN	NaN	0	0	Median	0	0	0	1010	581	963	2052;2053	4277;4278;4279	4279	634	3	9606
GHLENNPALEK	1	0	Unmodified	1220.6149	0.61494998	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4.33	0.471				2	1	13.647	13.647	2;3	3.1713E-05	4767	DP1063-9	142.98	80.874			8.064	8.2884	1.8413	2	0	Median	230670000	24387000	206280000	1011	98	964	2054;2055;2056	4280;4281;4282;4283;4284;4285;4286;4287;4288;4289;4290	4286		11	9606
GHNTNVGAIVFHPK	1	0	Unmodified	1489.779	0.77899561	50	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			15.502	15.502	3	4.99E-06	7347	DP1063-8	154.1	154.1			NaN	NaN	NaN	0	0	Median	77734000	0	77734000	1012	50	965	2057	4291;4292	4291		2	9606
GHQLLEEVTQGDMSAADTFLSDLPR	0	1	Oxidation (M)	2745.2916	0.29157351	448	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	2	0		1				23.097	23.097	3	2.3714E-08	17181	DP1063-7	132.39	110.26			NaN	NaN	NaN	0	0	Median	23847000	0	23847000	1013	448	966	2058	4293;4294;4295	4295	537	3	9606
GHYTEGAELVDSVLDVVR	0	1	Unmodified	1957.9745	0.97452012	311;109;373;366	P07437;P68371;Q13509;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB3;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	4	0.707			1	2	1	22.729	22.729	2;3	9.897800000000001E-62	16624	DP1063-8	247.02	247.02			4.2201	4.8906	45.848	4	0	Linear	496830000	105500000	391330000	1014	109;311;366;373	967	2059;2060;2061;2062	4296;4297;4298;4299;4300;4301;4302;4303;4304;4305;4306;4307	4299		12	9606
GHYTEGAELVDSVLDVVRK	1	1	Unmodified	2086.0695	0.069483134	311;109;373;366	P07437;P68371;Q13509;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB3;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	1	3.25	0.433			3	1		21.593	21.593	2;3;4	1.4696E-109	15230	DP1063-8	294.94	294.94			9.8614	9.9155	NaN	1	0	Median	248910000	16731000	232180000	1015	109;311;366;373	968	2063;2064;2065;2066	4308;4309;4310;4311;4312;4313;4314	4308		7	9606
GIAYIEFK	1	0	Unmodified	939.50657	0.50656873	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				19.425	19.425	2	0.011861	12333	DP1063-7	82.305	60.534			14.892	15.346	NaN	1	0	Median	164890000	12765000	152120000	1016	155	969	2067	4315;4316;4317;4318	4316		4	9606
GIAYIEFKTEADAEK	2	0	Unmodified	1683.8356	0.83556702	155	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				18.413	18.413	2	0.048039	10936	DP1063-7	89.548	57.133			NaN	NaN	NaN	0	0	Median	0	0	0	1017	155	970	2068	4319	4319		1	9606
GIDPFSLDALSK	1	0	Unmodified	1261.6554	0.65541781	202	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			22.1	22.1	2	0.014554	15942	DP1063-8	98.04	9.3597			NaN	NaN	NaN	0	0	Median	7190100	0	7190100	1018	202	971	2069	4320	4320		1	9606
GIDQCIPLFVEAALER	0	1	Unmodified	1829.9346	0.93456956	79	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				25.055	25.055	2	0.0022442	19570	DP1063-7	118.76	88.034			NaN	NaN	NaN	0	0	Median	7948200	0	7948200	1019	79	972	2070	4321;4322	4321		2	9606
GIDYDFPSLILQK	1	0	Unmodified	1507.7922	0.79224564	508	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	4	0				1		22.95	22.95	2	0.051633	17142	DP1063-9	77.379	37.754			NaN	NaN	NaN	0	0	Median	4986400	0	4986400	1020	508	973	2071	4323	4323		1	9606
GIECDIR	0	1	Unmodified	861.40145	0.40145173	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	4	0				1		15.348	15.348	2	0.027786	7044	DP1063-9	100.07	25.235			NaN	NaN	NaN	0	0	Median	34067000	0	34067000	1021	211	974	2072	4324	4324		1	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	3 Oxidation (M)	2225.0279	0.027894369	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	3	0	2	0		1				19.61	19.61	2	6.995E-11	12586	DP1063-7	136.57	136.57			1.0762	1.109	NaN	1	0	Median	48832000	22663000	26170000	1022	236	975	2073	4325;4326;4327;4328	4328	272;273;274	4	9606
GILAADESTGSIAK	1	0	Unmodified	1331.6933	0.69325988	87	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		17.224	17.224	2	0.029912	9639	DP1063-9	59.84	45.146			0.77686	0.79848	NaN	1	0	Median	13631000	7598600	6032200	1023	87	976	2074	4329	4329		1	9606
GILQELFLNK	1	0	Unmodified	1173.6758	0.67575932	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				23.52	23.52	2	0.0068001	17642	DP1063-7	125.81	89.257			NaN	NaN	NaN	0	0	Median	23168000	0	23168000	1024	482	977	2075	4330;4331	4330		2	9606
GINILISTPGR	0	1	Unmodified	1139.6663	0.66625727	522	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	2	0		1				19.628	19.628	2	0.049535	12623	DP1063-7	78.556	50.348			NaN	NaN	NaN	0	0	Median	6409400	0	6409400	1025	522	978	2076	4332	4332		1	9606
GINSSNVENQLQATQAAR	0	1	Unmodified	1899.9399	0.93986594	237	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			17.435	17.435	2	1.0341E-33	9904	DP1063-8	226.42	171.65			NaN	NaN	NaN	0	0	Median	39927000	0	39927000	1026	237	979	2077	4333	4333		1	9606
GIPAPEEERTR	0	2	Unmodified	1253.6364	0.6364137	80	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	1	4	0				1		14.063	14.063	3	0.032256	5342	DP1063-9	52.725	10.33			0.93244	0.94608	NaN	1	0	Median	8222100	3465500	4756600	1027	80	980	2078	4334	4334		1	9606
GIPHLVTHDAR	0	1	Unmodified	1214.652	0.65200419	281	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	4	0				2		14.444	14.444	2;3	0.00011103	5825	DP1063-9	110.39	110.39			4.8983	5.1238	NaN	1	0	Median	97489000	13590000	83900000	1028	281	981	2079;2080	4335;4336;4337;4338;4339	4337		5	9606
GIRDDIEEEDDQEAYFR	0	2	Unmodified	2098.908	0.90795669	442	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	1	2	0		1				19.061	19.061	2	0.022848	11863	DP1063-7	116.35	66.125			NaN	NaN	NaN	0	0	Median	10624000	0	10624000	1029	442	982	2081	4340	4340		1	9606
GISDLAQHYLMR	0	1	Oxidation (M)	1418.6976	0.69763375	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			19.455	19.455	3	0.015281	12482	DP1063-8	74.962	14.472			NaN	NaN	NaN	0	0	Median	11960000	0	11960000	1030	225	983	2082	4341	4341	261	1	9606
GISHVIVDEIHER	0	1	Unmodified	1502.7841	0.78414057	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				16.914	16.914	3	0.00084272	8912	DP1063-7	92.039	66.717			4.9561	5.0942	NaN	1	0	Median	42291000	7735600	34555000	1031	345	984	2083	4342;4343	4343		2	9606
GISVNAEQVR	0	1	Unmodified	1071.5673	0.5672715	517	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					15.75	15.75	2	0.014203	5842	DP1063-6	102.62	40.039			NaN	NaN	NaN	0	0	Median	6231800	0	6231800	1032	517	985	2084	4344;4345	4344		2	9606
GITINAAHVEYSTAAR	0	1	Unmodified	1672.8533	0.85328277	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		17.098	17.098	3	0.00061378	9400	DP1063-9	102.15	102.15			1.4151	1.4802	NaN	1	0	Median	37147000	21545000	15602000	1033	226	986	2085	4346	4346		1	9606
GITNLCVIGGDGSLTGANLFR	0	1	Unmodified	2134.0841	0.08408734	334	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	2	0		1				22.921	22.921	2	0.00065063	16972	DP1063-7	112.72	71.843			NaN	NaN	NaN	0	0	Median	7364900	0	7364900	1034	334	987	2086	4347	4347		1	9606
GIYTGLSAGLLR	0	1	Unmodified	1219.6925	0.69247202	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		20.796	20.796	2	0.00010253	14422	DP1063-9	131.5	80.8			2.9285	3.0633	NaN	1	0	Median	18342000	4492500	13849000	1035	337	988	2087	4348;4349	4349		2	9606
GKENTDSVVMQPK	2	0	Oxidation (M)	1447.6977	0.69769333	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	1	2	0		1				13.076	13.076	2	0.0038868	3767	DP1063-7	132.03	90.919			NaN	NaN	NaN	0	0	Median	4651100	0	4651100	1036	338	989	2088	4350;4351	4350	402	2	9606
GKPLPEYHVR	1	1	Unmodified	1194.6509	0.65094155	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					13.921	13.921	3	0.013744	3532	DP1063-6	83.499	51.084			NaN	NaN	NaN	0	0	Median	5230900	0	5230900	1037	318	990	2089	4352;4353	4352		2	9606
GKQSLETICLLLAYK	2	0	Unmodified	1735.9542	0.95424237	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3	0			1			21.349	21.349	3	0.00050164	14950	DP1063-8	125.33	103.49			NaN	NaN	NaN	0	0	Median	9096100	0	9096100	1038	194;264;265	991	2090	4354;4355	4355		2	9606
GKSEVPEDLAGFIELFQTPSHTK	2	0	Unmodified	2529.2751	0.27511881	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				23.029	23.029	3;4	7.1118999999999995E-22	15101	DP1063-6	175.42	156.71			NaN	NaN	NaN	0	0	Median	31228000	0	31228000	1039	211	992	2091;2092	4356;4357;4358;4359	4357		4	9606
GLAFELVYSPAIK	1	0	Unmodified	1406.781	0.78095267	315	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	4	0				1		22.221	22.221	2	0.042486	16261	DP1063-9	79.201	34.338			NaN	NaN	NaN	0	0	Median	4462000	0	4462000	1040	315	993	2093	4360	4360		1	9606
GLAPDLPEDLYHLIK	1	0	Unmodified	1692.9087	0.90867238	274	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					2	22.619	22.619	2;3	7.9989E-16	16919	DP1063-10	177.16	148.35			6.195	3.6751	8.4316	2	0	Median	55696000	7227100	48469000	1041	274	994	2094;2095	4361;4362;4363;4364;4365;4366	4362		6	9606
GLAPDLPEDLYHLIKK	2	0	Unmodified	1821.0036	0.0036354	274	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	21.446	21.446	3	0.0084641	15570	DP1063-10	85.287	47.63			NaN	NaN	NaN	0	0	Median	6859200	0	6859200	1042	274	995	2096	4367	4367		1	9606
GLAPVQAYLHIPDIIK	1	0	Unmodified	1747.0032	0.0032414695	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.25	1.3		4		2	2	23.164	23.164	2;3	3.9796E-16	16039	DP1063-7	184.34	184.34			0.78568	0.80857	33.51	8	0	Median	696430000	384210000	312220000	1043	130	996	2097;2098;2099;2100;2101;2102;2103;2104	4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391	4379		24	9606
GLCAIAQAESLR	0	1	Unmodified	1287.6605	0.66051996	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	5	0					1	18.854	18.854	2	0.0040776	12281	DP1063-10	123.96	53.038			NaN	NaN	NaN	0	0	Median	7050900	0	7050900	1044	164	997	2105	4392;4393	4393		2	9606
GLCGAIHSSIAK	1	0	Unmodified	1212.6285	0.62849155	192	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				2		15.474	15.474	2	0.0044968	7274	DP1063-9	120.27	90.197			NaN	NaN	NaN	0	0	Median	15904000	0	15904000	1045	192	998	2106;2107	4394;4395;4396	4394		3	9606
GLDIPEVDLVIQSSPPKDVESYIHR	1	1	Unmodified	2805.4549	0.45487409	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		2				22.037	22.037	3;4	3.4142E-05	15809	DP1063-7	107.47	67.098			NaN	NaN	NaN	0	0	Median	24781000	0	24781000	1046	531	999	2108;2109	4397;4398;4399	4397		3	9606
GLDSFLNR	0	1	Unmodified	920.47158	0.4715802	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				19.378	19.378	2	0.015989	12256	DP1063-7	105.2	21.586			NaN	NaN	NaN	0	0	Median	20228000	0	20228000	1047	482	1000	2110	4400;4401	4400		2	9606
GLDVDSLVIEHIQVNK	1	0	Unmodified	1777.9574	0.95741349	154	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					2	20.96	20.96	2;3	5.1123E-63	14928	DP1063-10	284.12	230.99			5.3605	3.18	NaN	1	0	Median	22904000	1977900	20926000	1048	154	1001	2111;2112	4402;4403;4404;4405	4404		4	9606
GLFIIDDKGILR	1	1	Unmodified	1358.7922	0.79218606	341;358	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	1	5	0					2	21.036	21.036	2;3	8.1325E-05	15041	DP1063-10	123.51	112.28			1.7882	1.7647	11.462	2	0	Median	33040000	11646000	21394000	1049	341;358	1002	2113;2114	4406;4407;4408;4409	4409		4	9606
GLGDCLVK	1	0	Unmodified	860.44259	0.44258826	93;133	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		17.047	17.047	2	0.033096	9337	DP1063-9	66.799	38.377			2.493	2.5624	NaN	1	0	Median	107220000	30291000	76933000	1050	93;133	1003	2115	4410	4410		1	9606
GLHSQNFTQALLER	0	1	Unmodified	1612.8322	0.8321534	583	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				18.572	18.572	2	0.016422	11106	DP1063-7	90.861	56.168			NaN	NaN	NaN	0	0	Median	9352700	0	9352700	1051	583	1004	2116	4411	4411		1	9606
GLLEESSFATLFPK	1	0	Unmodified	1537.8028	0.80281033	368	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		23.48	23.48	2	0.0021049	17675	DP1063-9	122.69	69.567			NaN	NaN	NaN	0	0	Median	6749700	0	6749700	1052	368	1005	2117	4412	4412		1	9606
GLLLFVDEADAFLR	0	1	Unmodified	1577.8453	0.84534384	536	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			26.22	26.22	2	0.0014257	20848	DP1063-8	127.42	78.784			1.8054	1.8707	NaN	1	0	Median	6309300	2004000	4305300	1053	536	1006	2118	4413;4414	4413		2	9606
GLLTIYMANLATETLFRMGVAR	0	2	2 Oxidation (M)	2472.2869	0.28688625	440	Q86UB9	TMEM135	Transmembrane protein 135	yes	yes	0	2	1	1	0	1					23.343	23.343	3	0.01837	15440	DP1063-6	46.209	46.209			0.90233	0.91799	NaN	1	0	Median	13582000	6394100	7187400	1054	440	1007	2119	4415	4415	532;533	1	9606
GLPWSCSADEVQR	0	1	Unmodified	1503.6776	0.67762659	184	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	4	0				1		18.715	18.715	2	0.019209	11622	DP1063-9	63.694	49.275			1.9192	2.0076	NaN	1	0	Median	18270000	5087400	13183000	1055	184	1008	2120	4416;4417	4416		2	9606
GLQEAQYR	0	1	Unmodified	963.47739	0.47739386	360	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				14.545	14.545	2	0.047686	5693	DP1063-7	86.866	10.02			NaN	NaN	NaN	0	0	Median	13196000	0	13196000	1056	360	1009	2121	4418	4418		1	9606
GLQTVHINENFAK	1	0	Unmodified	1469.7627	0.76267685	367	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3	0			1			17.026	17.026	3	0.049089	9434	DP1063-8	66.023	34.301			NaN	NaN	NaN	0	0	Median	23508000	0	23508000	1057	367	1010	2122	4419	4419		1	9606
GLSEDTTEETLK	1	0	Unmodified	1321.6249	0.62490554	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				16.23	16.23	2	0.052573	8074	DP1063-7	77.379	50.686			NaN	NaN	NaN	0	0	Median	28257000	0	28257000	1058	155	1011	2123	4420	4420		1	9606
GLSEDTTEETLKESFDGSVR	1	1	Unmodified	2199.0179	0.017901073	155	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0.894		2	1	2		19.351	19.351	2;3	1.9351E-83	12474	DP1063-8	278.36	244.26			12.322	12.903	NaN	1	0	Median	368400000	18741000	349660000	1059	155	1012	2124;2125;2126;2127;2128	4421;4422;4423;4424;4425;4426;4427;4428	4425		8	9606
GLSQSALPYR	0	1	Unmodified	1090.5771	0.57710791	274	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	17.029	17.029	2	3.4978E-05	9810	DP1063-10	130.27	62.291			6.212	4.4805	NaN	1	0	Median	103830000	13990000	89839000	1060	274	1013	2129	4429;4430	4430		2	9606
GLSQSALPYRR	0	2	Unmodified	1246.6782	0.67821894	274	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	15.569	15.569	3	0.013307	7936	DP1063-10	81.95	44.254			NaN	NaN	NaN	0	0	Median	39848000	0	39848000	1061	274	1014	2130	4431;4432	4431		2	9606
GLSSLLYGSIPK	1	0	Unmodified	1233.6969	0.69688869	241	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				3		21.467	21.467	2	0.014583	15243	DP1063-9	121.5	38.238			NaN	NaN	NaN	0	0	Median	5784600	5784600	0	1062	241	1015	2131;2132;2133	4433;4434;4435;4436	4435		4	9606
GLTSVINQK	1	0	Unmodified	958.54475	0.54474515	107	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		16.324	16.324	2	0.012259	8382	DP1063-9	104.37	53.02			NaN	NaN	NaN	0	0	Median	12730000	12730000	0	1063	107	1016	2134	4437;4438	4437		2	9606
GLVLIAFSQYLQQCPFDEHVK	1	0	Unmodified	2491.257	0.25696633	12	CON__P02769			yes	yes	0	0	0	2.79	0.925	4	21	21	14	1	30.789	30.789	2;3;4	1.3654E-71	16207	DP1063-6	290.64	259.6		+	NaN	NaN	NaN	0	0	Median	18466000000	18466000000	0	1064	12	1017	2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195	4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542;4543;4544;4545;4546;4547;4548;4549;4550;4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567;4568;4569;4570;4571;4572;4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602	4444		164	
GLVLLRPPASLQYR	0	2	Unmodified	1581.9355	0.93549626	484	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	1	2	0		1				19.723	19.723	3	0.00084321	12741	DP1063-7	121.02	82.576			NaN	NaN	NaN	0	0	Median	10927000	0	10927000	1065	484	1018	2196	4603	4603		1	9606
GLVPEDDTKEK	2	0	Unmodified	1229.6139	0.61394692	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				14.319	14.319	3	0.0069212	5389	DP1063-7	67.214	67.214			0.58774	0.60653	NaN	1	0	Median	22085000	12926000	9159100	1066	406	1019	2197	4604;4605	4605		2	9606
GLYAAFDCTATMK	1	0	Oxidation (M)	1463.6425	0.64248664	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		18.699	18.699	2	5.4954E-10	11312	DP1063-7	169.76	160.65			1.0492	1.0812	13.258	3	0	Median	481420000	227630000	253790000	1067	130	1020	2198;2199;2200	4606;4607;4608;4609;4610;4611	4607	155	6	9606
GLYAAFDCTATMK	1	0	Unmodified	1447.6476	0.64757201	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				19.663	19.663	2	6.0408E-07	12651	DP1063-7	166.66	166.66			1.1242	1.1584	NaN	1	0	Median	78842000	35340000	43502000	1068	130	1020	2201	4612;4613;4614;4615	4612		4	9606
GMGTVEGGDQSNPK	1	0	Unmodified	1375.6038	0.60379294	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				13.811	13.811	2	0.0032024	3423	DP1063-6	114.86	103.23			NaN	NaN	NaN	0	0	Median	10468000	0	10468000	1069	365	1021	2202;2203	4616;4617;4618	4617		3	9606
GNAGQSNYGFANSAMER	0	1	Oxidation (M)	1788.7486	0.7485597	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	1	0	1					16.095	16.095	2	0.00024323	6298	DP1063-6	134.61	118.08			1.2099	1.2685	NaN	1	0	Median	9725700	3781600	5944100	1070	224	1022	2204	4619;4620	4619	260	2	9606
GNEKEDAAGTSGLGELNSR	1	1	Unmodified	1903.8872	0.88716167	424	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3	0			1			15.716	15.716	2	4.5017E-72	7713	DP1063-8	277.41	243.54			NaN	NaN	NaN	0	0	Median	17666000	0	17666000	1071	424	1023	2205	4621;4622	4621		2	9606
GNFGGSFAGSFGGAGGHAPGVAR	0	1	Unmodified	2033.9456	0.94562002	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3.25	1.3		2		1	1	18.345	18.345	2;3	3.8828E-28	10828	DP1063-7	189.8	169.7			1.0341	1.049	26.692	4	0	Median	285220000	117740000	167480000	1072	236	1024	2206;2207;2208;2209	4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633;4634	4629		12	9606
GNIPTLNR	0	1	Unmodified	883.48756	0.48756462	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				16.006	16.006	2	0.0021257	6090	DP1063-6	98.418	37.619			0.97465	0.97962	11.911	2	0	Median	868930000	447360000	421570000	1073	355	1025	2210;2211	4635;4636;4637;4638	4637		4	9606
GNLANVIR	0	1	Unmodified	855.49265	0.49265	93;133;132	P05141;Q9H0C2;P12236;P12235	SLC25A5;SLC25A31;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	2.5	1.5	1			1		16.512	16.512	2	0.0019389	8569	DP1063-9	97.071	52.35			3.0764	3.218	NaN	1	0	Median	233770000	46337000	187430000	1074	93;133;132	1026	2212;2213	4639;4640;4641;4642	4642		4	9606
GNLDDFFHR	0	1	Unmodified	1119.5098	0.50975662	11	CON__P02672			yes	yes	0	0	0	5	0					1	19.121	19.121	2	0.0075533	12529	DP1063-10	116.9	82.096		+	NaN	NaN	NaN	0	0	Median	8563700	8563700	0	1075	11	1027	2214	4643;4644	4643		2	
GNMGVCFDVPTTESER	0	1	Oxidation (M)	1813.7611	0.76109822	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	1	0	2	0		1				18.263	18.263	2	0.041776	10776	DP1063-7	81.647	52.584			NaN	NaN	NaN	0	0	Median	16867000	0	16867000	1076	490	1028	2215	4645	4645		1	9606
GNSRPGTPSAEGGSTSSTLR	0	2	Unmodified	1917.914	0.91404512	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3.33	0.471			2	1		13.732	13.732	2;3	1.9157E-10	5065	DP1063-8	157.74	126.39			NaN	NaN	NaN	0	0	Median	71647000	0	71647000	1077	190	1029	2216;2217;2218	4646;4647;4648;4649;4650;4651;4652	4650		7	9606
GNTAEGCVHETQEK	1	0	Unmodified	1558.6682	0.66818411	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		2				12.631	12.631	2;3	2.2594E-32	3246	DP1063-7	248.19	194.42			NaN	NaN	NaN	0	0	Median	20991000	0	20991000	1078	493	1030	2219;2220	4653;4654;4655;4656;4657	4655		5	9606
GNVGFVFTK	1	0	Unmodified	967.51272	0.51271674	98	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				1		18.696	18.696	2	0.00078245	11527	DP1063-9	101.54	80.014			9.9588	10.236	NaN	1	0	Median	88470000	8644300	79826000	1079	98	1031	2221	4658;4659;4660	4658		3	9606
GNVGFVFTKEDLTEIR	1	1	Unmodified	1823.9418	0.94176342	98	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	1	4	0				2		20.315	20.315	2;3	2.6462E-16	13798	DP1063-9	191.53	140.25			NaN	NaN	NaN	0	0	Median	33542000	0	33542000	1080	98	1032	2222;2223	4661;4662	4662		2	9606
GNVGFVFTKEDLTEIRDMLLANK	2	1	Oxidation (M)	2625.3472	0.3472379	98	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	1	2	4	0				1		22.596	22.596	3	0.020479	16760	DP1063-9	86.575	54.494			NaN	NaN	NaN	0	0	Median	16941000	0	16941000	1081	98	1033	2224	4663	4663	100	1	9606
GPASVPSVGK	1	0	Unmodified	897.49198	0.4919813	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				14.721	14.721	2	0.01678	4469	DP1063-6	97.635	29.412			NaN	NaN	NaN	0	0	Median	84642000	0	84642000	1082	365	1034	2225;2226	4664;4665	4664		2	9606
GPAVGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2262.1103	0.11030209	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	2.67	0.471		1	2			20.313	20.313	2;3	4.257E-44	13580	DP1063-8	220.21	167.63			4.155	4.2328	49.2	2	0	Median	142260000	19992000	122270000	1083	128	1035	2227;2228;2229	4666;4667;4668;4669;4670	4669		5	9606
GPCIIYNEDNGIIK	1	0	Unmodified	1604.7868	0.78684269	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3.5	0.5			1	1		19.109	19.109	2	5.0736E-06	12123	DP1063-9	157.78	157.78			6.901	7.093	NaN	1	0	Median	78913000	6110300	72802000	1084	193	1036	2230;2231	4671;4672;4673;4674	4672		4	9606
GPGLGSTQGQTIALPAQGLIEFR	0	1	Unmodified	2310.2332	0.23319442	327	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	4	0				1		22.547	22.547	2	5.7117E-63	16612	DP1063-9	229.92	199.9			NaN	NaN	NaN	0	0	Median	2722300	0	2722300	1085	327	1037	2232	4675;4676	4675		2	9606
GPGRPVSSPHELR	0	2	Unmodified	1387.732	0.73204542	427	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	1	2	0		1				13.097	13.097	3	0.021708	3800	DP1063-7	75.669	36.49			NaN	NaN	NaN	0	0	Median	5004900	0	5004900	1086	427	1038	2233	4677	4677		1	9606
GPQPPTVSPIR	0	1	Unmodified	1147.635	0.63495714	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.461	16.461	2	0.013338	8260	DP1063-7	104.01	52.678			NaN	NaN	NaN	0	0	Median	21920000	0	21920000	1087	212	1039	2234	4678;4679	4679		2	9606
GPSSVEDIK	1	0	Unmodified	930.46583	0.46582612	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.611	14.611	2	0.00023249	6047	DP1063-9	130.22	78.885			78.403	61.222	55.824	2	0	Median	4195999999.9999995	53705000	4142299999.9999995	1088	105	1040	2235;2236;2237;2238;2239	4680;4681;4682;4683;4684;4685;4686;4687;4688;4689	4687		10	9606
GPSSVEDIKAK	2	0	Unmodified	1129.5979	0.59790293	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		13.614	13.614	2	0.0012241	4750	DP1063-9	154.01	88.546			NaN	NaN	NaN	0	0	Median	135680000	0	135680000	1089	105	1041	2240	4690;4691	4691		2	9606
GPTVSNIR	0	1	Unmodified	842.46102	0.46101552	521	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		14.135	14.135	2	0.0090042	5424	DP1063-9	110.63	62.785			NaN	NaN	NaN	0	0	Median	23219000	0	23219000	1090	521	1042	2241	4692;4693	4693		2	9606
GPVKPTGGPGGGGTQTQQQMNQLK	2	0	Oxidation (M)	2381.1758	0.17575589	172	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	1	1	3	0			1			13.856	13.856	3	5.2786E-05	5219	DP1063-8	86.987	68.971			0.9799	0.95389	NaN	1	0	Median	5098500	2647400	2451100	1091	172	1043	2242	4694;4695	4694	198	2	9606
GPVTIPYPLFQSHVEDLYVEGLPEGIPFR	0	1	Unmodified	3268.6809	0.68085128	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				24.587	24.587	3	1.1283E-10	19057	DP1063-7	107.87	107.87			0.44268	0.45887	NaN	1	0	Median	11946000	7914600	4031300	1092	316	1044	2243	4696;4697;4698	4696		3	9606
GPYESGSGHSSGLGHQESR	0	1	Unmodified	1927.8409	0.84088018	27	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1	0	1					12.909	12.909	3	0.015497	2405	DP1063-6	79.837	45.658		+	NaN	NaN	NaN	0	0	Median	1097700	1097700	0	1093	27	1045	2244	4699;4700	4699		2	9606
GPYESGSGHSSGLGHR	0	1	Unmodified	1583.7077	0.70768116	27	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1.5	0.5	1	1				12.752	12.752	3	3.7521E-14	2222	DP1063-6	177.38	131.72		+	NaN	NaN	NaN	0	0	Median	19607000	19607000	0	1094	27	1046	2245;2246	4701;4702;4703;4704	4702		4	9606
GQDPGAPQLQSESKPPK	2	0	Unmodified	1762.885	0.88497683	424	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3	0			1			14.444	14.444	3	0.002749	6045	DP1063-8	97.904	66.23			NaN	NaN	NaN	0	0	Median	9461100	0	9461100	1095	424	1047	2247	4705;4706	4706		2	9606
GQIGAPMPGK	1	0	Oxidation (M)	970.4906	0.49060109	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	0			1			13.933	13.933	2	0.0042612	5450	DP1063-8	79.713	51.83			0.79521	0.80091	NaN	1	0	Median	27419000	15014000	12405000	1096	130	1048	2248	4707;4708;4709	4709	156	3	9606
GQILMPNIGYGSNK	1	0	Oxidation (M)	1506.7501	0.75006325	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	0	5	0					1	17.916	17.916	2	0.00085968	10894	DP1063-10	128.67	96.068			8.4596	5.0185	NaN	1	0	Median	24566000	2701100	21865000	1097	296	1049	2249	4710;4711	4711	353	2	9606
GQILMPNIGYGSNKK	2	0	Oxidation (M)	1634.845	0.84502627	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	1	5	0					1	16.463	16.463	3	0.0053664	9066	DP1063-10	99.927	59.45			NaN	NaN	NaN	0	0	Median	15108000	0	15108000	1098	296	1050	2250	4712;4713	4713	353	2	9606
GQNLLQTQDHAK	1	0	Unmodified	1351.6844	0.68442653	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		14.141	14.141	2	1.3184E-18	5107	DP1063-7	235.66	186.13			NaN	NaN	NaN	0	0	Median	85194000	0	85194000	1099	211	1051	2251;2252;2253	4714;4715;4716;4717;4718;4719;4720	4717		7	9606
GQSEDPGSLLSLFR	0	1	Unmodified	1504.7522	0.75217174	112	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				23.426	23.426	2	7.774E-16	17613	DP1063-7	192.68	147.82			1.8425	1.9109	NaN	1	0	Median	14752000	6469600	8282200	1100	112	1052	2254	4721;4722	4722		2	9606
GQSPAGDGSPEPPTPR	0	1	Unmodified	1548.7168	0.71684887	520	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	2	0		1				14.787	14.787	2	8.0976E-06	6023	DP1063-7	148.68	105.4			NaN	NaN	NaN	0	0	Median	0	0	0	1101	520	1053	2255	4723	4723		1	9606
GQVGGDVNVEMDAAPGVDLSR	0	1	Oxidation (M)	2100.9746	0.97459647	9	CON__P02533;P02533;CON__Q6IFX2	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	1	0	2.5	1.5	1			1		18.441	18.441	2	1.3637E-11	11238	DP1063-9	160.63	125.88		+	NaN	NaN	NaN	0	0	Median	11021000	11021000	0	1102	9	1054	2256;2257	4724;4725;4726;4727	4725	2	4	9606
GQVLPAHTLLNTVDVELIYEGVK	1	0	Unmodified	2507.3635	0.36353989	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				22.934	22.934	2;3	3.6412E-37	16942	DP1063-7	210.34	210.34			0.90917	0.93213	15.538	4	0	Median	104770000	50529000	54238000	1103	355	1055	2258;2259;2260;2261	4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742	4740		15	9606
GRAPQVLVLAPTR	0	2	Unmodified	1376.8252	0.82521752	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				17.13	17.13	3	0.0015627	9153	DP1063-7	80.312	60.205			14.25	14.373	NaN	1	0	Median	35466000	4654000	30812000	1104	531	1056	2262	4743;4744	4743		2	9606
GRDDCGTFEDTGPLLQFDYK	1	1	Unmodified	2333.027	0.027025972	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		2				21.035	21.035	2;3	3.8336E-17	14457	DP1063-7	182.15	151.83			NaN	NaN	NaN	0	0	Median	117040000	0	117040000	1105	381	1057	2263;2264	4745;4746;4747;4748	4746		4	9606
GRDVESVQTPSK	1	1	Unmodified	1301.6575	0.65754307	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.25	0.829	1	1	2			13.207	13.207	2;3	0.0019166	2724	DP1063-6	113.07	75.924			NaN	NaN	NaN	0	0	Median	48859000	0	48859000	1106	211	1058	2265;2266;2267;2268	4749;4750;4751;4752;4753;4754	4749		6	9606
GRPISHSTTEDLKR	1	2	Unmodified	1595.838	0.83796706	516	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	2	3	0.816		1	1	1		12.592	12.592	4	0.0010727	3224	DP1063-7	113.25	87.275			NaN	NaN	NaN	0	0	Median	49698000	0	49698000	1107	516	1059	2269;2270;2271	4755;4756;4757;4758	4755		4	9606
GSAYLEAGGTK	1	0	Unmodified	1052.5138	0.51383895	422	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		14.819	14.819	2	0.033791	6337	DP1063-9	83.869	52.795			NaN	NaN	NaN	0	0	Median	7141300	0	7141300	1108	422	1060	2272	4759	4759		1	9606
GSENKTDLDNSIGIK	2	0	Unmodified	1589.7897	0.78967946	516	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2	0		2				16.051	16.051	2	2.8467E-07	7745	DP1063-7	157.5	90.929			NaN	NaN	NaN	0	0	Median	7247200	0	7247200	1109	516	1061	2273;2274	4760;4761	4760		2	9606
GSIIISPCVVCR	0	1	Unmodified	1359.7003	0.70027629	473	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	4	0				1		19.04	19.04	2	0.022966	11992	DP1063-9	90.15	27.848			NaN	NaN	NaN	0	0	Median	5938700	0	5938700	1110	473	1062	2275	4762	4762		1	9606
GSLGGGFSSGGFSGGSFSR	0	1	Unmodified	1706.7649	0.76486169	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.33	1.7	1			1	1	19.485	19.485	2	7.1127E-16	10624	DP1063-6	172.58	151.27		+	NaN	NaN	NaN	0	0	Median	63263000	63263000	0	1111	16	1063	2276;2277;2278	4763;4764;4765;4766;4767;4768	4765		6	9606
GSLGQGTAPVLPGK	1	0	Unmodified	1280.7089	0.70885036	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				16.953	16.953	2	0.0012269	8894	DP1063-7	130.01	87.288			NaN	NaN	NaN	0	0	Median	109050000	0	109050000	1112	365	1064	2279;2280	4769;4770;4771	4770		3	9606
GSLGSQGAKDEPEEELQK	2	0	Unmodified	1900.9014	0.90141475	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	1.5	0.5	2	2				15.171	15.171	2;3	2.1459E-16	5158	DP1063-6	181.71	106.76			NaN	NaN	NaN	0	0	Median	45189000	0	45189000	1113	365	1065	2281;2282;2283;2284	4772;4773;4774;4775;4776;4777	4774		6	9606
GSPTGGAQLLKR	1	1	Unmodified	1183.6673	0.6673199	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1		1		1		14.639	14.639	3	0.0064792	5792	DP1063-7	94.767	42.489			NaN	NaN	NaN	0	0	Median	22132000	0	22132000	1114	381	1066	2285;2286	4778;4779;4780	4778		3	9606
GSSDAVSPDTFTAEVSSDAVPDVR	0	1	Unmodified	2408.0979	0.097942308	428	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				20.829	20.829	2	1.0715E-05	14251	DP1063-7	116.3	93.805			NaN	NaN	NaN	0	0	Median	8521500	0	8521500	1115	428	1067	2287	4781	4781		1	9606
GSSGGGCFGGSSGGYGGLGGFGGGSFR	0	1	Unmodified	2341.9771	0.97705609	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.67	1.25	1		1	1		20.436	20.436	2	1.3719E-26	13724	DP1063-8	171.85	146.3		+	NaN	NaN	NaN	0	0	Median	61585000	61585000	0	1116	16	1068	2288;2289;2290	4782;4783;4784;4785;4786	4783		5	9606
GSSSGGGYSSGSSSYGSGGR	0	1	Unmodified	1739.6983	0.69829827	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0.816	1	1	1			13.782	13.782	2	2.0996E-60	5085	DP1063-8	252.52	233.85		+	NaN	NaN	NaN	0	0	Median	29446000	29446000	0	1117	20	1069	2291;2292;2293	4787;4788;4789;4790;4791;4792	4791		6	9606
GSSWHETCFICHR	0	1	Unmodified	1675.6984	0.69837881	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		16.07	16.07	3	0.00070952	8097	DP1063-9	102.97	74.687			0.81046	0.84777	NaN	1	0	Median	35450000	22089000	13361000	1118	377	1070	2294	4793;4794;4795;4796	4794		4	9606
GSVLEPEGTVEIK	1	0	Unmodified	1356.7137	0.71366097	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		18.14	18.14	2	0.00019736	8815	DP1063-6	157.97	107.94			0.85803	0.88302	3.2268	4	0	Median	989600000	537830000	451770000	1119	355	1071	2295;2296;2297;2298	4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808	4799		12	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	0	1	Unmodified	3311.3008	0.30084566	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.4	1.02	1	2	1	1		15.342	15.342	3	4.7428E-43	7135	DP1063-8	172.88	137.61		+	NaN	NaN	NaN	0	0	Median	69250000	69250000	0	1120	88	1072	2299;2300;2301;2302;2303	4809;4810;4811;4812;4813;4814;4815;4816	4814		8	9606
GSYSCEVTHEGSTVTK	1	0	Unmodified	1740.7625	0.76247843	23	CON__Q1RMN8			yes	yes	0	0	0	5	0					2	14.571	14.571	2;3	1.6231E-25	6812	DP1063-10	240.59	169.69		+	NaN	NaN	NaN	0	0	Median	39332000	39332000	0	1121	23	1073	2304;2305	4817;4818;4819;4820	4819		4	
GTAYVVYEDIFDAK	1	0	Unmodified	1589.7613	0.76133944	576	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	22.384	22.384	2	0.0031373	16646	DP1063-10	115.33	81.24			NaN	NaN	NaN	0	0	Median	8994500	0	8994500	1122	576	1074	2306	4821;4822	4822		2	9606
GTDIMYTGTLDCWR	0	1	Oxidation (M)	1703.7283	0.72834153	93	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	0	4	0				1		19.942	19.942	2	4.3335E-10	13271	DP1063-9	170.89	151.93			2.5121	2.6277	NaN	1	0	Median	22045000	8990100	13055000	1123	93	1075	2307	4823;4824;4825	4824	81	3	9606
GTEASSGTEAATGLEGEEK	1	0	Unmodified	1822.8068	0.80684567	448	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	3	1		1		1		15.729	15.729	2	3.7243E-73	7272	DP1063-7	279.56	240.98			NaN	NaN	NaN	0	0	Median	13171000	0	13171000	1124	448	1076	2308;2309	4826;4827;4828;4829	4828		4	9606
GTGEAEEEYVGPR	0	1	Unmodified	1392.6157	0.61573784	374	Q13895	BYSL	Bystin	yes	yes	0	0	0	3.5	0.5			1	1		15.892	15.892	2	0.01389	7827	DP1063-9	95.483	68.594			NaN	NaN	NaN	0	0	Median	15242000	0	15242000	1125	374	1077	2310;2311	4830;4831;4832	4832		3	9606
GTGGVDTAAVGGVFDVSNADR	0	1	Unmodified	1963.9235	0.92354718	135	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		20.056	20.056	2	0.016488	13475	DP1063-9	83.968	41.938			NaN	NaN	NaN	0	0	Median	8813500	8813500	0	1126	135	1078	2312	4833;4834;4835	4835		3	9606
GTGIVSAPVPK	1	0	Unmodified	1024.5917	0.59169534	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.154	16.154	2	0.0089083	8141	DP1063-9	74.165	74.165			3.672	3.7741	NaN	1	0	Median	148670000	33405000	115260000	1127	141	1079	2313	4836;4837;4838	4836		3	9606
GTHFVQLCCQR	0	1	Unmodified	1404.6391	0.63907301	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		15.587	15.587	2;3	4.3378E-06	7471	DP1063-8	147.3	147.3			1.1708	1.2132	6.6322	4	0	Median	949240000	430350000	518900000	1128	524	1080	2314;2315;2316;2317	4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850;4851;4852	4840		14	9606
GTIEILSDVQLIK	1	0	Unmodified	1427.8235	0.82354577	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		22.362	22.362	2	1.3291E-22	16390	DP1063-9	204.56	163.48			14.543	14.947	NaN	1	0	Median	42636000	2018700	40617000	1129	98	1081	2318	4853;4854;4855	4854		3	9606
GTLDPVEK	1	0	Unmodified	857.44945	0.44944778	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			14.933	14.933	2	0.033637	6653	DP1063-8	66.429	23.955			4.149	4.1787	NaN	1	0	Median	137780000	25650000	112130000	1130	128	1082	2319	4856;4857	4857		2	9606
GTLVQTKGTGASGSFK	2	0	Unmodified	1537.81	0.81002097	142;125	P10412;P16402;Q02539;P16401;P16403	HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1B;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.5;Histone H1.2	no	no	0	0	1	4	0				1		14.704	14.704	3	0.00039617	6208	DP1063-9	107.61	88.509			1.7341	1.8344	NaN	1	0	Median	10674000	2966700	7707700	1131	125;142	1083	2320	4858;4859	4858		2	9606
GTMTTGHNVADLVVILK	1	0	Oxidation (M)	1783.9502	0.95021962	350	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	1	0	4	0				1		19.758	19.758	3	0.015975	13065	DP1063-9	74.428	33.627			NaN	NaN	NaN	0	0	Median	10913000	0	10913000	1132	350	1084	2321	4860;4861	4861	409	2	9606
GTPLDTEVPMER	0	1	Oxidation (M)	1359.634	0.63403044	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		16.928	16.928	2	5.808E-05	8788	DP1063-7	136.52	136.52			0.79608	0.78578	20.153	3	0	Median	661970000	356790000	305180000	1133	130	1085	2322;2323;2324	4862;4863;4864;4865;4866;4867;4868;4869	4864	157	8	9606
GTPLDTEVPMER	0	1	Unmodified	1343.6391	0.63911582	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				18.121	18.121	2	3.8164E-10	10483	DP1063-7	175.93	175.93			0.78962	0.79469	NaN	1	0	Median	163770000	92144000	71628000	1134	130	1085	2325	4870;4871;4872;4873	4870		4	9606
GTPSGNLYKPLADEK	2	0	Unmodified	1588.8097	0.80968662	7	CON__ENSEMBL:ENSBTAP00000031360			yes	no	0	0	1	3	0			2			16.099	16.099	2;3	0.00089933	8199	DP1063-8	116.58	75.334		+	NaN	NaN	NaN	0	0	Median	80990000	80990000	0	1135	7	1086	2326;2327	4874;4875;4876	4876		3	
GTVVTGTLER	0	1	Unmodified	1031.5611	0.56112349	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		15.679	15.679	2	5.2384E-05	7539	DP1063-9	125.82	89.436			2.2422	2.3455	NaN	1	0	Median	25451000	6973300	18477000	1136	226	1087	2328	4877;4878	4877		2	9606
GTYQGLTATVLK	1	0	Unmodified	1250.6871	0.68705229	241	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		18.659	18.659	2	0.040451	11561	DP1063-9	73.951	73.951			1.9203	1.9737	NaN	1	0	Median	21078000	6557500	14521000	1137	241	1088	2329	4879;4880	4880		2	9606
GVAMNPVEHPFGGGNHQHIGK	1	0	Oxidation (M)	2198.044	0.04395386	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	0	4	0				1		14.681	14.681	4	0.0024809	6236	DP1063-9	87.429	56.34			NaN	NaN	NaN	0	0	Median	13065000	0	13065000	1138	298	1089	2330	4881;4882	4882	357	2	9606
GVAMNPVEHPFGGGNHQHIGKPSTIR	1	1	Oxidation (M)	2752.3616	0.3615996	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	1	4	0				2		15.02	15.02	4;5	5.9371E-05	6559	DP1063-9	93.551	67.134			9.227	8.726	NaN	1	0	Median	179060000	12970000	166090000	1139	298	1090	2331;2332	4883;4884;4885	4884	357	3	9606
GVAMNPVEHPFGGGNHQHIGKPSTIR	1	1	Unmodified	2736.3667	0.36668498	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		15.663	15.663	6	0.02182	7433	DP1063-9	49.106	35.071			NaN	NaN	NaN	0	0	Median	13763000	0	13763000	1140	298	1090	2333	4886;4887	4886		2	9606
GVAPLWMR	0	1	Oxidation (M)	944.49021	0.49020716	326	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	1	0	1					18.198	18.198	2	0.02072	8970	DP1063-6	67.035	34.68			2.9287	3.0709	NaN	1	0	Median	8224500	2424400	5800100	1141	326	1091	2334	4888	4888	390	1	9606
GVDLDQLLDMSYEQLMQLYSAR	0	1	2 Oxidation (M)	2619.2197	0.21965412	288	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	2	0	5	0					1	27.29	27.29	3	0.030256	21978	DP1063-10	66.383	37.99			NaN	NaN	NaN	0	0	Median	0	0	0	1142	288	1092	2335	4889	4889	344;345	1	9606
GVEEEEEDGEMRE	0	1	Oxidation (M)	1552.5835	0.58351101	276	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	1	5	0					1	14.408	14.408	2	0.00071608	6560	DP1063-10	140.78	140.78			3.5247	2.5422	NaN	1	0	Median	15002000	3337400	11665000	1143	276	1093	2336	4890;4891;4892;4893	4890	330	4	9606
GVEICIATPGR	0	1	Unmodified	1171.6019	0.60194245	148;469	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	2.5	0.5		1	1			18.146	18.146	2	0.0026236	10727	DP1063-8	136.57	90.141			NaN	NaN	NaN	0	0	Median	65958000	0	65958000	1144	469;148	1094	2337;2338	4894;4895;4896	4895		3	9606
GVFEAIVDQSPFVPEETMEEQK	1	0	Oxidation (M)	2524.1679	0.16793613	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3	1		1		1		23.056	23.056	2	8.6468E-45	17104	DP1063-7	228.11	173.16			NaN	NaN	NaN	0	0	Median	57193000	0	57193000	1145	381	1095	2339;2340	4897;4898;4899	4898	477	3	9606
GVFEAIVDQSPFVPEETMEEQK	1	0	Unmodified	2508.173	0.17302151	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				23.611	23.611	2	2.2431E-26	17813	DP1063-7	192.54	155.91			NaN	NaN	NaN	0	0	Median	7998600	0	7998600	1146	381	1095	2341	4900;4901	4901		2	9606
GVFVQSVLPYFVATK	1	0	Unmodified	1653.913	0.91302948	417	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	4	0				1		23.495	23.495	2	0.002166	17824	DP1063-9	99.522	79.139			1.447	1.4872	NaN	1	0	Median	6377100	2485000	3892100	1147	417	1096	2342	4902;4903;4904	4903		3	9606
GVGIISEGNETVEDIAAR	0	1	Unmodified	1828.9167	0.91667089	92	P05023;P13637;P50993	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	yes	no	0	0	0	2	0		1				20.236	20.236	2	1.3995E-15	13386	DP1063-7	177.42	127.31			NaN	NaN	NaN	0	0	Median	18462000	0	18462000	1148	92	1097	2343	4905;4906	4905		2	9606
GVGVALDDPYENYRR	0	2	Unmodified	1722.8325	0.83254733	446	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	1	2	0		1				17.947	17.947	3	0.0081463	10289	DP1063-7	85.554	53.879			NaN	NaN	NaN	0	0	Median	8114800	0	8114800	1149	446	1098	2344	4907	4907		1	9606
GVMLAVDAVIAELKK	2	0	Oxidation (M)	1571.8957	0.89566485	126	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	1	3	0			1			22.289	22.289	3	0.0055801	16085	DP1063-8	99.069	74.654			NaN	NaN	NaN	0	0	Median	5121100	5121100	0	1150	126	1099	2345	4908	4908	142	1	9606
GVPGPFLVCGPLSTLPNWMAEFK	1	0	Oxidation (M)	2532.2545	0.25452349	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				25.144	25.144	2	0.032809	19805	DP1063-7	75.998	47.716			NaN	NaN	NaN	0	0	Median	3248000	0	3248000	1151	532	1100	2346	4909	4909		1	9606
GVQSAAVQAFLK	1	0	Unmodified	1217.6768	0.67682195	427	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	2	0		1				19.658	19.658	2	0.021674	12699	DP1063-7	91.265	57.344			NaN	NaN	NaN	0	0	Median	10951000	0	10951000	1152	427	1101	2347	4910;4911	4911		2	9606
GVSFTFGAEVVAK	1	0	Unmodified	1310.6871	0.68705229	194;264	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.08	0.276			11	1		26.835	26.835	2	0.0034768	13819	DP1063-8	117.02	117.02			NaN	NaN	NaN	0	0	Median	212670000	0	212670000	1153	194;264	1102	2348;2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359	4912;4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928	4912		17	9606
GVTFLFPIQAK	1	0	Unmodified	1219.6965	0.69649476	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				22.173	22.173	2	3.0182E-05	15926	DP1063-7	130.56	130.56			14.608	15.053	NaN	1	0	Median	55913000	4466300	51447000	1154	531	1103	2360	4929;4930	4930		2	9606
GVTHNIALLR	0	1	Unmodified	1092.6404	0.64037687	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			16.404	16.404	2	9.2206E-09	8542	DP1063-8	157.99	157.99			1.1223	1.141	9.551	2	0	Median	474340000	212240000	262100000	1155	94	1104	2361;2362	4931;4932;4933;4934;4935;4936	4935		6	9606
GVTNDQVDPSVDVLK	1	0	Unmodified	1584.7995	0.79951586	568	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		18.46	18.46	2	4.6154E-05	11231	DP1063-9	140.91	107.68			NaN	NaN	NaN	0	0	Median	16995000	0	16995000	1156	568	1105	2363	4937;4938;4939	4938		3	9606
GVTYLFPIQVK	1	0	Unmodified	1263.7227	0.72270951	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				21.703	21.703	2	0.022226	15441	DP1063-7	93.162	72.261			NaN	NaN	NaN	0	0	Median	16815000	0	16815000	1157	490	1106	2364	4940;4941	4940		2	9606
GVVDSEDLPLNISR	0	1	Unmodified	1512.7784	0.77838649	113;110	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	2	0		1				20.063	20.063	2	6.5218E-09	13150	DP1063-7	169.82	0			NaN	NaN	NaN	0	0	Median	84489000	84489000	0	1158	110;113	1107	2365	4942;4943;4944	4943		3	9606
GVVMHTFGGYANSK	1	0	Oxidation (M)	1482.6925	0.69254837	433	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		15.404	15.404	3	0.008988	7126	DP1063-9	79.886	47.447			NaN	NaN	NaN	0	0	Median	12923000	0	12923000	1159	433	1108	2366	4945;4946	4945	529	2	9606
GVVPLAGTNGETTTQGLDGLSER	0	1	Unmodified	2271.1343	0.13426824	87	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		19.763	19.763	2	0.03897	13040	DP1063-9	77.562	42.444			NaN	NaN	NaN	0	0	Median	0	0	0	1160	87	1109	2367	4947	4947		1	9606
GVVQELQQAISK	1	0	Unmodified	1298.7194	0.71941505	180	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		21.178	21.178	2	0.00099113	14910	DP1063-9	104.43	104.43			0.72635	0.74656	NaN	1	0	Median	11393000	6788300	4604800	1161	180	1110	2368	4948;4949	4948		2	9606
GVVQLFNAVQK	1	0	Unmodified	1201.6819	0.68190733	577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	4	0				1		20.087	20.087	2	0.00052851	13472	DP1063-9	148.38	85.8			NaN	NaN	NaN	0	0	Median	20873000	0	20873000	1162	577	1111	2369	4950;4951	4951		2	9606
GYAFIEFASFEDAK	1	0	Unmodified	1593.7351	0.73512469	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			23.049	23.049	2	8.3002E-12	17078	DP1063-8	195.51	169.1			3.544	3.6519	NaN	1	0	Median	70264000	8924500	61340000	1163	155	1112	2370;2371	4952;4953;4954;4955	4955		4	9606
GYAFIEFASFEDAKEALNSCNKR	2	1	Unmodified	2666.2435	0.24350111	155	P19338	NCL	Nucleolin	yes	yes	0	0	2	2	0		2				21.491	21.491	3;4	8.3858E-10	15115	DP1063-7	142.43	118.89			NaN	NaN	NaN	0	0	Median	43714000	0	43714000	1164	155	1113	2372;2373	4956;4957;4958	4956		3	9606
GYAYTFITEDQAR	0	1	Unmodified	1533.71	0.70997257	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				19.687	19.687	2	0.0011388	12723	DP1063-7	134.84	79.295			NaN	NaN	NaN	0	0	Median	25337000	0	25337000	1165	436	1114	2374	4959;4960	4960		2	9606
GYFEYIEENKYSR	1	1	Unmodified	1696.7733	0.77330111	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				18.859	18.859	3	0.01585	11617	DP1063-7	66.023	56.787			4.9578	5.1914	NaN	1	0	Median	48393000	7098000	41295000	1166	330	1115	2375	4961	4961		0	9606
GYGFVHFETQEAAER	0	1	Unmodified	1739.7903	0.79034816	131	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	2	0		1				18.257	18.257	2	0.0095879	10754	DP1063-7	95.618	72.382			NaN	NaN	NaN	0	0	Median	13323000	0	13323000	1167	131	1116	2376	4962	4962		1	9606
GYSFTTTAER	0	1	Unmodified	1131.5197	0.51965261	252	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	4	0				1		16.527	16.527	2	3.0604E-08	8623	DP1063-9	153.08	125.95			0.91652	0.95871	NaN	1	0	Median	108880000	56687000	52192000	1168	252	1117	2377	4963;4964;4965;4966	4965		4	9606
GYVKDVDDGLQAAEEVGYPVMIK	2	0	Oxidation (M)	2511.2203	0.22030605	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	3					20.836	20.836	2;3	1.7051E-88	12821	DP1063-6	263.07	263.07			0.87279	0.88807	3.3241	3	0	Median	192430000	96583000	95850000	1169	355	1118	2378;2379;2380	4967;4968;4969;4970;4971;4972;4973;4974;4975;4976;4977	4976	416	11	9606
HALIIYDDLSK	1	0	Unmodified	1286.6871	0.68705229	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			3			18.271	18.271	2	1.2211E-05	10852	DP1063-8	144.77	117.47			0.66807	0.67285	NaN	1	0	Median	28105000	13693000	14412000	1170	170	1119	2381;2382;2383	4978;4979;4980;4981	4979		4	9606
HAPINSAQHLDNVDQTGPK	1	0	Unmodified	2040.9977	0.99771517	49	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	3	0			1			14.462	14.462	3	0.0001083	6066	DP1063-8	128.59	104.58			NaN	NaN	NaN	0	0	Median	8370100	0	8370100	1171	49	1120	2384	4982;4983	4983		2	9606
HATAEEVEEEERDR	0	2	Unmodified	1698.7445	0.74452018	459	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	1	4	0				1		13.849	13.849	3	0.030865	5108	DP1063-9	71.085	33.534			NaN	NaN	NaN	0	0	Median	19201000	0	19201000	1172	459	1121	2385	4984	4984		1	9606
HDLDLICR	0	1	Unmodified	1040.5073	0.50731378	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0.816			1	1	1	16.677	16.677	2	0.0050906	8892	DP1063-8	152.47	101.77			NaN	NaN	NaN	0	0	Median	1116700000	0	1116700000	1173	194;264;265	1122	2386;2387;2388	4985;4986;4987;4988	4986		4	9606
HDVVQTAVPDGPLQEVPLR	0	1	Unmodified	2069.0906	0.090552927	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					19.53	19.53	2	3.4853E-12	10640	DP1063-6	156.5	124.52			NaN	NaN	NaN	0	0	Median	0	0	0	1174	73	1123	2389	4989	4989		1	9606
HEGVFICR	0	1	Unmodified	1016.4862	0.48618441	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		15.152	15.152	2	0.048525	6797	DP1063-9	86.472	67.941			NaN	NaN	NaN	0	0	Median	18404000	0	18404000	1175	160	1124	2390	4990	4990		1	9606
HELQANCYEEVKDR	1	1	Unmodified	1789.8053	0.8053463	165	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	5	0					1	14.518	14.518	3	0.0017436	6750	DP1063-10	79.804	52.596			1.2016	1.1858	NaN	1	0	Median	8866500	3825100	5041300	1176	165	1125	2391	4991;4992;4993;4994	4993		4	9606
HFNAPSHIR	0	1	Unmodified	1077.5468	0.54681083	255	P61254	RPL26	60S ribosomal protein L26	yes	yes	0	0	0	5	0					1	13.244	13.244	2	0.0020661	5239	DP1063-10	143.12	63.214			NaN	NaN	NaN	0	0	Median	4699500	0	4699500	1177	255	1126	2392	4995;4996	4996		2	9606
HGDEIITSTTSNYETQTFSSK	1	0	Unmodified	2345.0659	0.065913898	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					17.788	17.788	2	3.1025E-06	8374	DP1063-6	111.81	85.373			NaN	NaN	NaN	0	0	Median	0	0	0	1178	431	1127	2393	4997	4997		1	9606
HGDVITIIDR	0	1	Unmodified	1137.6142	0.6142217	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		17.237	17.237	2	0.0013877	7694	DP1063-6	146.79	95.593			NaN	NaN	NaN	0	0	Median	120840000	0	120840000	1179	211	1128	2394;2395;2396	4998;4999;5000;5001;5002;5003	4998		6	9606
HGEEVTPEDVLSAAMYPDVFAHFK	1	0	Oxidation (M)	2704.2479	0.24791778	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.75	0.829		2	1	1		22.368	22.368	2;4	7.4497E-28	16281	DP1063-7	192.4	182.56			0.86783	0.89311	19.517	4	0	Median	181910000	100980000	80931000	1180	130	1129	2397;2398;2399;2400	5004;5005;5006;5007;5008;5009;5010;5011;5012;5013;5014;5015	5013	158	12	9606
HGEEVTPEDVLSAAMYPDVFAHFK	1	0	Unmodified	2688.253	0.25300316	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			23.397	23.397	3;4	2.0995E-15	17560	DP1063-7	160.47	160.47			0.73857	0.76104	0.18627	2	0	Median	98087000	60766000	37321000	1181	130	1129	2401;2402;2403	5016;5017;5018;5019;5020;5021;5022;5023	5018		8	9606
HGEVCPAGWKPGSDTIKPDVQK	3	0	Unmodified	2405.1798	0.17977864	341	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	2	5	0					1	15.812	15.812	4	0.0097637	8317	DP1063-10	55.209	55.209			0.84863	0.92359	NaN	1	0	Median	11329000	5428700	5900500	1182	341	1130	2404	5024	5024		1	9606
HGGGGGGFGGGGFGSR	0	1	Unmodified	1319.5755	0.57554478	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	2					14.948	14.948	2;3	0.0053437	4823	DP1063-6	124.39	110.25		+	NaN	NaN	NaN	0	0	Median	28340000	28340000	0	1183	20	1131	2405;2406	5025;5026;5027;5028	5027		4	9606
HGLLVPNNTTDQELQHIR	0	1	Unmodified	2084.0763	0.076299846	248	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	5	0					1	17.335	17.335	3	0.00028151	10241	DP1063-10	125.98	97.764			NaN	NaN	NaN	0	0	Median	8857900	0	8857900	1184	248	1132	2407	5029;5030	5030		2	9606
HGNALWLNER	0	1	Unmodified	1208.6051	0.60505399	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		16.765	16.765	2;3	1.3171E-11	8676	DP1063-7	169.44	134.14			1.0815	1.1029	11.722	4	0	Median	263900000	124560000	139340000	1185	94	1133	2408;2409;2410;2411	5031;5032;5033;5034;5035;5036;5037	5032		6	9606
HGSGSGHSSSYGQHGSGSGWSSSSGR	0	1	Unmodified	2476.0137	0.013652602	27	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1	0	1					12.633	12.633	4	0.017865	2086	DP1063-6	75.524	55.81		+	NaN	NaN	NaN	0	0	Median	2050100	2050100	0	1186	27	1134	2412	5038	5038		1	9606
HGSLGFLPR	0	1	Unmodified	982.53485	0.53484916	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		17.03	17.03	2	3.1861E-10	9317	DP1063-9	157.21	125.92			11.76	12.301	NaN	1	0	Median	163030000	13334000	149700000	1187	201	1135	2413	5039;5040;5041;5042	5041		4	9606
HGVQELEIELQSQLSK	1	0	Unmodified	1836.9581	0.95814177	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.25	0.829	1	1	2			20.717	20.717	2;3	5.6582E-42	14127	DP1063-8	233.47	194.44		+	NaN	NaN	NaN	0	0	Median	73445000	73445000	0	1188	19	1136	2414;2415;2416;2417	5043;5044;5045;5046;5047	5046		5	9606
HGVVPLATYMR	0	1	Oxidation (M)	1258.6492	0.64922699	215	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	1	0	5	0					1	16.08	16.08	2	0.0057437	8622	DP1063-10	73.985	55.76			7.9412	5.7276	NaN	1	0	Median	47988000	8509900	39478000	1189	215	1137	2418	5048;5049	5048	255	2	9606
HGVVPLATYMR	0	1	Unmodified	1242.6543	0.65431237	215	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					1	17.684	17.684	2	0.0001143	10655	DP1063-10	120.87	96.637			5.8498	4.2192	NaN	1	0	Median	12126000	1538100	10588000	1190	215	1137	2419	5050;5051	5051		2	9606
HGYIGEFEIIDDHR	0	1	Unmodified	1699.7954	0.79543354	268	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					2	18.593	18.593	2;3	3.8635E-18	11857	DP1063-10	217.22	171.4			4.2392	3.0575	NaN	1	0	Median	63374000	9605800	53768000	1191	268	1138	2420;2421	5052;5053;5054;5055	5054		4	9606
HHLQPENPGPGGAAPSLEQNR	0	1	Unmodified	2205.0675	0.067526074	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	0.471		2	1			15.046	15.046	2;3	1.4739E-35	6349	DP1063-7	204.17	175.81			NaN	NaN	NaN	0	0	Median	130910000	0	130910000	1192	381	1139	2422;2423;2424	5056;5057;5058;5059;5060;5061;5062;5063;5064	5062		9	9606
HHYEQQQEDLAR	0	1	Unmodified	1552.7019	0.7018675	385	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	0	1.5	0.5	1	1				12.979	12.979	3	0.00028406	2439	DP1063-6	108.72	108.72			5.8857	6.1712	NaN	1	0	Median	12938000	1217500	11720000	1193	385	1140	2425;2426	5065;5066;5067;5068;5069	5065		5	9606
HIANYISGIQTIGHR	0	1	Unmodified	1678.8903	0.89033698	402	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					17.528	17.528	3	0.0026423	8034	DP1063-6	103.6	74.648			NaN	NaN	NaN	0	0	Median	9715500	0	9715500	1194	402	1141	2427	5070	5070		1	9606
HIEIQVLGDK	1	0	Unmodified	1150.6346	0.63462279	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		17.174	17.174	2	4.3291E-09	9568	DP1063-8	163.66	113.63			1.0301	1.0131	4.1602	3	0	Plateau	504090000	248570000	255520000	1195	94	1142	2428;2429;2430	5071;5072;5073;5074;5075;5076;5077;5078;5079;5080;5081	5077		11	9606
HIEVQILGDQYGNILHLYER	0	1	Unmodified	2409.2441	0.24409346	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				21.656	21.656	4	0.00023083	15353	DP1063-7	116.85	98.78			NaN	NaN	NaN	0	0	Median	21507000	0	21507000	1196	130	1143	2431	5082;5083	5082		2	9606
HIMGQNVADYMR	0	1	2 Oxidation (M)	1465.6442	0.64421797	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	0	4	0				1		14.454	14.454	3	0.0012591	5835	DP1063-9	75.739	60.77			14.487	15.154	NaN	1	0	Median	38806000	2589900	36216000	1197	214	1144	2432	5084;5085	5085	248;249	2	9606
HKSETDTSLIR	1	1	Unmodified	1285.6626	0.66262845	202	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	1	3	0			1			13.217	13.217	3	0.00014173	4454	DP1063-8	105.25	76.969			2.1709	2.1828	NaN	1	0	Median	18571000	5553800	13017000	1198	202	1145	2433	5086;5087;5088	5087		3	9606
HLCGDTNYAWPTAEIAVMGAK	1	0	Oxidation (M)	2320.0616	0.061637339	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.522	19.522	3	1.2481E-06	12526	DP1063-8	107.18	92.339			0.99108	0.99818	NaN	1	0	Median	60254000	28289000	31964000	1199	95	1146	2434	5089;5090;5091;5092	5089	97	4	9606
HLDDINFDVR	0	1	Unmodified	1242.5993	0.59929991	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					18.106	18.106	2	0.0071938	8750	DP1063-6	123.86	99.774			NaN	NaN	NaN	0	0	Median	14578000	0	14578000	1200	73	1147	2435	5093;5094	5093		2	9606
HLEINPDHPIVETLR	0	1	Unmodified	1781.9424	0.94243213	113	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				17.768	17.768	3	0.0022498	10065	DP1063-7	127.03	100.82			NaN	NaN	NaN	0	0	Median	18242000	18242000	0	1201	113	1148	2436	5095	5095		1	9606
HLEMNPHFGSHR	0	1	Oxidation (M)	1476.6681	0.66806496	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	2	0		1				12.737	12.737	3	0.011197	3402	DP1063-7	78.692	53.757			NaN	NaN	NaN	0	0	Median	5338500	0	5338500	1202	345	1149	2437	5096;5097	5096	408	2	9606
HLEPALAFQLELNR	0	1	Unmodified	1649.8889	0.88893999	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.5	0.5	2	2				20.613	20.613	2;3	9.5837E-11	12066	DP1063-6	199.03	199.03			0.9532	0.97714	9.654	4	0	Median	263370000	134020000	129350000	1203	355;38	1150	2438;2439;2440;2441	5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113	5105		16	9606
HLEVQILADQYGNAISLFGR	0	1	Unmodified	2243.1699	0.16986588	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				23.214	23.214	2;3	2.7380999999999997E-32	15306	DP1063-6	200.73	200.73			1.1485	1.2003	4.8902	2	0	Median	26134000	15666000	10468000	1204	355	1151	2442;2443;2444	5114;5115;5116;5117;5118;5119;5120	5118		7	9606
HLFLLLK	1	0	Unmodified	882.56911	0.5691094	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					19.593	19.593	2	0.031627	10748	DP1063-6	98.03	14.006			NaN	NaN	NaN	0	0	Median	7576700	0	7576700	1205	73	1152	2445	5121;5122	5121		2	9606
HLLIGVSSDR	0	1	Unmodified	1095.6037	0.60365701	192	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		16.168	16.168	2	0.0042465	8225	DP1063-9	85.161	68.385			2.3113	2.4177	NaN	1	0	Median	40855000	13537000	27319000	1206	192	1153	2446	5123;5124	5124		2	9606
HLLTLKDDAVKK	3	0	Unmodified	1379.8136	0.81364979	530	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	2	3	0			1			14.303	14.303	3	0.0083087	5862	DP1063-8	112.94	86.579			NaN	NaN	NaN	0	0	Median	9724900	0	9724900	1207	530	1154	2447	5125	5125		1	9606
HLQLAIR	0	1	Unmodified	849.51847	0.51847082	91;122;121	Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q71UI9;P0C0S5;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA;H2AFV;H2AFZ;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	5	0					1	15.686	15.686	2	0.0019548	8109	DP1063-10	107.55	26.553			3.3757	2.4348	NaN	1	0	Median	856230000	189510000	666720000	1208	91;121;122	1155	2448	5126;5127;5128;5129	5128		4	9606
HLQLAIRNDEELNK	1	1	Unmodified	1691.8955	0.89548193	91;122	Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	1	5	0					1	16.035	16.035	3	0.00094926	8536	DP1063-10	99.844	99.844			2.9586	2.9199	NaN	1	0	Median	59822000	16493000	43329000	1209	91;122	1156	2449	5130;5131;5132;5133	5130		4	9606
HLTDAYFK	1	0	Unmodified	993.49198	0.4919813	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.086	16.086	2	0.0022288	8028	DP1063-9	110.31	83.172			10.333	10.621	NaN	1	0	Median	151320000	12032000	139290000	1210	336	1157	2450	5134;5135	5134		2	9606
HLTGEFEK	1	0	Unmodified	959.47125	0.47124585	286	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	13.871	13.871	2	0.012524	5962	DP1063-10	107.9	54.341			NaN	NaN	NaN	0	0	Median	2504200	0	2504200	1211	286	1158	2451	5136	5136		1	9606
HLVDEPQNLIK	1	0	Unmodified	1304.7089	0.70885036	12	CON__P02769			yes	yes	0	0	0	2.14	1	34	54	13	19		22.395	22.395	2;3	1.5429E-29	16820	DP1063-6	216.12	150.66		+	NaN	NaN	NaN	0	0	Median	68963000000	68963000000	0	1212	12	1159	2452;2453;2454;2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528;2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540;2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571	5137;5138;5139;5140;5141;5142;5143;5144;5145;5146;5147;5148;5149;5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166;5167;5168;5169;5170;5171;5172;5173;5174;5175;5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198;5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223;5224;5225;5226;5227;5228;5229;5230;5231;5232;5233;5234;5235;5236;5237;5238;5239;5240;5241;5242;5243;5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265;5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281;5282;5283;5284;5285;5286;5287;5288;5289;5290;5291;5292;5293;5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307;5308;5309;5310;5311;5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335;5336;5337;5338	5154		202	
HLVDEPQNLIKQNCDQFEK	2	0	Unmodified	2354.1325	0.1324941	12	CON__P02769			yes	yes	0	0	1	3	0			1			17.731	17.731	3	9.5522E-11	10185	DP1063-8	158.45	122.34		+	NaN	NaN	NaN	0	0	Median	60489000	60489000	0	1213	12	1160	2572	5339;5340	5339		2	
HLVQTHYYNYR	0	1	Unmodified	1492.7211	0.72114638	74	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	4	0				1		14.851	14.851	3	6.377E-05	6377	DP1063-9	120.06	96.593			1.1975	1.2526	NaN	1	0	Median	15297000	6456000	8841200	1214	74	1161	2573	5341;5342	5341		2	9606
HMEMYADR	0	1	Unmodified	1051.4215	0.42153524	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.229	14.229	2	0.0002433	3950	DP1063-6	137.18	120.22			0.97698	1.0148	NaN	1	0	Median	20783000	10635000	10148000	1215	355	1162	2574	5343;5344;5345	5345		3	9606
HMEMYADRESR	0	2	Oxidation (M)	1439.5922	0.5921824	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					12.733	12.733	3	0.039076	2126	DP1063-6	40.496	39.057			1.0819	1.1007	NaN	1	0	Median	11550000	5342300	6207800	1216	355	1163	2575	5346	5346		1	9606
HMFHVAWVDPEDPYK	1	0	Oxidation (M)	1885.8458	0.84575455	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				18.598	18.598	2;3	2.9786E-10	9457	DP1063-6	171.62	156.18			0.82625	0.84285	13.875	3	0	Median	227010000	122170000	104840000	1217	355	1164	2576;2577;2578	5347;5348;5349;5350;5351;5352;5353;5354;5355;5356	5355	422	10	9606
HMFHVAWVDPEDPYK	1	0	Unmodified	1869.8508	0.85083993	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					19.368	19.368	2;3	0.0007414	10392	DP1063-6	119.88	97.024			0.83165	0.84836	NaN	1	0	Median	38480000	17931000	20549000	1218	355	1164	2579;2580	5357;5358;5359;5360;5361	5357		5	9606
HMFHVAWVDPEDPYKGYR	1	1	Oxidation (M)	2262.0317	0.03165784	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.25	0.433	3	1				18.274	18.274	2;3;4	3.0005E-19	8948	DP1063-6	194.77	194.77			0.82976	0.87629	11.623	3	0	Median	284950000	154570000	130380000	1219	355	1165	2581;2582;2583;2584	5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373	5363	422	12	9606
HMLPSGFR	0	1	Oxidation (M)	959.46472	0.46472069	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	0	5	0					1	14.618	14.618	2	0.0075036	6866	DP1063-10	82.305	61.606			8.9964	6.4887	NaN	1	0	Median	42684000	3520700	39163000	1220	296	1166	2585	5374;5375	5374	354	2	9606
HMYHSLYLK	1	0	Oxidation (M)	1206.5856	0.5855641	324	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	1	0	5	0					1	14.334	14.334	3	0.0035126	6468	DP1063-10	72.879	72.879			14.211	8.4305	NaN	1	0	Median	48436000	3321900	45114000	1221	324	1167	2586	5376;5377	5376	388	2	9606
HNFCFMEMNTR	0	1	2 Oxidation (M)	1517.585	0.58498853	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2.33	0.471		2	1			15.479	15.479	2;3	0.00075053	6924	DP1063-7	85.29	85.29			1.137	1.1711	4.287	3	0	Median	179350000	79460000	99887000	1222	483	1168	2587;2588;2589	5378;5379;5380;5381;5382;5383;5384	5381	552;553	7	9606
HNFCFMEMNTR	0	1	Oxidation (M)	1501.5901	0.59007391	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		2				16.985	16.985	2;3	0.00016778	8922	DP1063-7	101.38	101.38			1.0576	1.0893	NaN	1	0	Median	49944000	28310000	21634000	1223	483	1168	2590;2591	5385;5386;5387;5388	5386	552;553	4	9606
HNQVESIFLSAIDMYGHQFCIENLQK	1	0	Oxidation (M)	3136.4746	0.47464003	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.67	0.471	1	2				23.897	23.897	3;4	1.7961E-16	18179	DP1063-7	160.25	160.25			0.70955	0.72381	35.719	3	0	Median	31336000	16596000	14740000	1224	355	1169	2592;2593;2594	5389;5390;5391;5392;5393;5394;5395;5396;5397;5398;5399;5400	5395	423	12	9606
HPAKPDPSGECNPDLR	1	1	Unmodified	1788.8213	0.82133071	407	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	3	0			1			13.447	13.447	3	0.0072673	4755	DP1063-8	87.447	64.592			NaN	NaN	NaN	0	0	Median	5402500	0	5402500	1225	407	1170	2595	5401	5401		1	9606
HPENYDLATLK	1	0	Unmodified	1299.6459	0.64591575	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				16.371	16.371	2	3.3355E-05	8155	DP1063-7	128.03	80.166			0.89185	0.91899	NaN	1	0	Median	24755000	12089000	12667000	1226	316	1171	2596	5402;5403	5403		2	9606
HPEYAVSVLLR	0	1	Unmodified	1282.7034	0.70337105	12	CON__P02769			yes	yes	0	0	0	2.75	0.968	1	2	3	2		19.541	19.541	2;3	1.021E-26	11259	DP1063-8	228.64	195.41		+	NaN	NaN	NaN	0	0	Median	3074499999.9999995	3074499999.9999995	0	1227	12	1172	2597;2598;2599;2600;2601;2602;2603;2604	5404;5405;5406;5407;5408;5409;5410;5411;5412;5413;5414;5415;5416;5417;5418;5419	5412		16	
HPFSFPLENQAR	0	1	Unmodified	1441.7102	0.71024735	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				18.336	18.336	3	0.0010377	10817	DP1063-7	132.56	109.54			NaN	NaN	NaN	0	0	Median	23440000	0	23440000	1228	493	1173	2605	5420;5421	5421		2	9606
HPGSFDVVHVK	1	0	Unmodified	1220.6302	0.63020611	281	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	4	0				2		15.108	15.108	2;3	0.00011104	6698	DP1063-9	115.57	96.997			4.6613	4.791	NaN	1	0	Median	55222000	10570000	44651000	1229	281	1174	2606;2607	5422;5423;5424;5425	5422		4	9606
HPQPGAVELAAK	1	0	Unmodified	1216.6564	0.65642086	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					14.495	14.495	2	2.4225E-05	4265	DP1063-6	150.04	150.04			2.0232	2.0639	NaN	1	0	Median	9126500	3484500	5642000	1230	179	1175	2608	5426;5427;5428;5429	5427		4	9606
HPVLCQSLLPILVQHITGPVRPR	0	2	Unmodified	2629.5003	0.50026534	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				21.16	21.16	4	1.6839E-15	14676	DP1063-7	157.73	143.2			NaN	NaN	NaN	0	0	Median	16172000	0	16172000	1231	493	1176	2609	5430;5431	5430		2	9606
HPYFYAPELLYYANK	1	0	Unmodified	1887.9196	0.91957142	12	CON__P02769			yes	yes	0	0	0	2	0.883	36	55	19	7	1	29.759	29.759	2;3	1.574E-62	12992	DP1063-6	317.75	244.09		+	NaN	NaN	NaN	0	0	Median	1789199999.9999998	1789199999.9999998	0	1232	12	1177	2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638;2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727	5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447;5448;5449;5450;5451;5452;5453;5454;5455;5456;5457;5458;5459;5460;5461;5462;5463;5464;5465;5466;5467;5468;5469;5470;5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481;5482;5483;5484;5485;5486;5487;5488;5489;5490;5491;5492;5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505;5506;5507;5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520;5521;5522;5523;5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534;5535;5536;5537;5538;5539;5540;5541;5542;5543;5544;5545;5546;5547;5548;5549;5550;5551;5552;5553;5554;5555;5556;5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585;5586;5587;5588;5589;5590;5591;5592;5593;5594;5595;5596;5597;5598;5599	5436		168	
HQEGEIFDTEK	1	0	Unmodified	1331.5994	0.59935949	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		15.372	15.372	2	1.515E-05	7060	DP1063-9	165.63	135.07			NaN	NaN	NaN	0	0	Median	26879000	0	26879000	1233	336	1178	2728	5600;5601	5601		2	9606
HQEGEIFDTEKEK	2	0	Unmodified	1588.7369	0.73691561	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				1		14.323	14.323	3	9.6554E-05	5780	DP1063-9	141	105.97			NaN	NaN	NaN	0	0	Median	29926000	0	29926000	1234	336	1179	2729	5602;5603	5603		2	9606
HQEGEIFDTEKEKYEITEQR	2	1	Unmodified	2508.1769	0.17686133	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	2	4	0				4		16.765	16.765	2;3;4;5	3.4755E-28	8933	DP1063-9	190.82	149.73			12.193	12.757	33.397	2	0	Median	253880000	25723000	228150000	1235	336	1180	2730;2731;2732;2733	5604;5605;5606;5607;5608;5609;5610;5611;5612;5613	5613		10	9606
HQHMHDRDDLYAEQMER	0	2	2 Oxidation (M)	2241.928	0.9279974	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	2	1	1	0	1					12.938	12.938	4	0.041581	2452	DP1063-6	55.851	40.086			NaN	NaN	NaN	0	0	Median	2850000	0	2850000	1236	585	1181	2734	5614	5614		1	9606
HQSFVLVGETGSGK	1	0	Unmodified	1444.731	0.73104237	48	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	2	0		1				16.512	16.512	2	0.00061528	8364	DP1063-7	135.94	79.506			NaN	NaN	NaN	0	0	Median	13325000	0	13325000	1237	48	1182	2735	5615	5615		1	9606
HQVEQLSSSLK	1	0	Unmodified	1254.6568	0.65681479	388	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					14.672	14.672	2	0.035083	4510	DP1063-6	82.831	37.67			NaN	NaN	NaN	0	0	Median	2045800	0	2045800	1238	388	1183	2736	5616	5616		1	9606
HQVIQTVHPVEK	1	0	Unmodified	1413.7728	0.7728476	515	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				13.476	13.476	3	0.013891	4295	DP1063-7	109.16	74.152			NaN	NaN	NaN	0	0	Median	0	0	0	1239	515	1184	2737	5617	5617		1	9606
HSEAATAQREEWK	1	1	Unmodified	1541.7223	0.7222686	375	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	1	4	0				1		13.059	13.059	3	0.0052645	4122	DP1063-9	66.989	50.456			1.7435	1.6488	NaN	1	0	Median	6217600	2371200	3846400	1240	375	1185	2738	5618;5619	5618		2	9606
HSEAFEALQQK	1	0	Unmodified	1286.6255	0.62551466	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			15.491	15.491	2	1.3363E-10	7385	DP1063-8	172.88	133.7			0.72107	0.72624	NaN	1	0	Median	33668000	18870000	14799000	1241	344	1186	2739	5620	5620		1	9606
HSGNITFDEIVNIAR	0	1	Unmodified	1684.8533	0.85328277	181	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					2	20.769	20.769	2;3	6.3556E-122	14656	DP1063-10	309.35	274.85			12.048	8.6894	3.2894	2	0	Median	97100000	7259000	89841000	1242	181	1187	2740;2741	5621;5622;5623;5624;5625	5625		5	9606
HSGPNSADSANDGFVR	0	1	Unmodified	1629.7132	0.71316047	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				2		14.359	14.359	2;3	7.299E-25	5739	DP1063-9	217.12	174.88			3.8471	4.0243	NaN	1	0	Median	49897000	8220600	41676000	1243	239	1188	2742;2743	5626;5627;5628;5629;5630	5630		5	9606
HSSLITPLQAVAQR	0	1	Unmodified	1519.8471	0.84707518	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	2					18.394	18.394	2	0.0021091	9173	DP1063-6	115.7	71.382			NaN	NaN	NaN	0	0	Median	0	0	0	1244	318	1189	2744;2745	5631;5632	5632		2	9606
HTFSGVASVESSSGEAFHVGK	1	0	Unmodified	2118.997	0.99704647	15	CON__P12763			yes	yes	0	0	0	3	0			1			17.398	17.398	3	8.5035E-27	9813	DP1063-8	197.41	158.29		+	NaN	NaN	NaN	0	0	Median	132000000	132000000	0	1245	15	1190	2746	5633;5634	5634		2	9606
HTGPITCLQFNPK	1	0	Unmodified	1511.7555	0.75548298	433	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				2		17.285	17.285	2;3	3.0444E-08	9652	DP1063-9	169.58	107.98			NaN	NaN	NaN	0	0	Median	19539000	0	19539000	1246	433	1191	2747;2748	5635;5636;5637;5638	5636		4	9606
HTGPNSPDTANDGFVR	0	1	Unmodified	1683.7601	0.76011066	184	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3.33	0.471			2	1		14.932	14.932	2;3	2.0776E-103	6729	DP1063-8	289.37	266.84			1.5296	1.6	13.214	3	0	Median	129160000	45817000	83346000	1247	184	1192	2749;2750;2751	5639;5640;5641;5642;5643;5644;5645;5646;5647	5640		9	9606
HTPLVEFEEEESDKR	1	1	Unmodified	1843.8588	0.85882166	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.2	1.17		2	1	1	1	16.925	16.925	2;3	1.4653999999999998E-72	8880	DP1063-7	269.95	269.95			0.9167	0.9213	5.723	4	0	Median	280010000	148040000	131970000	1248	483	1193	2752;2753;2754;2755;2756	5648;5649;5650;5651;5652;5653;5654;5655;5656;5657;5658;5659;5660	5654		13	9606
HTPLVEFEEEESDKRESE	1	1	Unmodified	2188.976	0.97603626	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	3.25	1.3		2		1	1	17.171	17.171	2;3	4.0242999999999995E-36	9385	DP1063-9	213.69	213.69			0.94704	0.96271	6.662	4	0	Median	943720000	470430000	473290000	1249	483	1194	2757;2758;2759;2760	5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674;5675	5675		15	9606
HVEVQVFGDHHGNAVYLFER	0	1	Unmodified	2352.14	0.13996274	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.86	0.833		3	2	2		18.766	18.766	2;3;4	1.8325E-96	11428	DP1063-7	268.17	248.67			1.169	1.1638	6.9714	7	0	Median	1496199999.9999998	692730000	803490000	1250	483	1195	2761;2762;2763;2764;2765;2766;2767	5676;5677;5678;5679;5680;5681;5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694;5695;5696;5697;5698;5699;5700;5701;5702;5703;5704	5679		29	9606
HVQLLGR	0	1	Unmodified	821.48717	0.48717069	437;474	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				14.737	14.737	2	0.0036707	5923	DP1063-7	100.27	35.71			0.71535	0.74268	NaN	1	0	Median	21794000	10879000	10914000	1251	437;474	1196	2768	5705;5706	5705		2	9606
HVYKAMTLMEYLIK	2	0	2 Oxidation (M)	1770.9048	0.90484933	587	Q9Y6I3	EPN1	Epsin-1	yes	yes	0	2	1	3	0			1			20.586	20.586	2	0.012195	13934	DP1063-8	50.108	14.455			0.89067	0.86703	NaN	1	0	Median	196090000	92818000	103270000	1252	587	1197	2769	5707	5707	639;640	1	9606
HWGGNVLGPK	1	0	Unmodified	1063.5563	0.55631289	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		15.796	15.796	2	9.4804E-06	7642	DP1063-9	136.8	136.8			10.799	11.1	NaN	1	0	Median	144840000	10992000	133850000	1253	280	1198	2770	5708;5709;5710;5711	5709		4	9606
HWHEACFHCSQCR	0	1	Unmodified	1813.6984	0.69839558	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		13.593	13.593	4	0.0015596	4696	DP1063-9	73.082	72.138			0.96296	1.0073	NaN	1	0	Median	20677000	10022000	10656000	1254	377	1199	2771	5712;5713;5714;5715	5712		4	9606
HWHHNCFSCAR	0	1	Unmodified	1510.6095	0.60950422	370	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		13.066	13.066	3	0.0069745	4134	DP1063-9	68.355	55.434			0.82403	0.86197	NaN	1	0	Median	5450100	3322400	2127800	1255	370	1200	2772	5716;5717	5717		2	9606
HWPFQVINDGDKPK	2	0	Unmodified	1679.842	0.8419898	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			17.978	17.978	3	0.00070378	10358	DP1063-8	120.84	120.84			3.7958	3.695	NaN	1	0	Median	201330000	60006000	141330000	1256	124	1201	2773	5718;5719;5720;5721;5722	5719		5	9606
HYAHTDCPGHADYVK	1	0	Unmodified	1769.758	0.75800217	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		12.893	12.893	4	0.046838	3933	DP1063-9	33.751	28.87			2.0418	2.0986	NaN	1	0	Median	6511300	2206900	4304400	1257	226	1202	2774	5723	5723		1	9606
HYFIEVNSR	0	1	Unmodified	1163.5724	0.57235688	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.534	16.534	2	2.1938E-06	8360	DP1063-7	143.89	83.127			1.0154	1.0015	4.823	3	0	Median	701800000	347300000	354500000	1258	130	1203	2775;2776;2777	5724;5725;5726;5727;5728;5729;5730;5731;5732;5733	5724		10	9606
HYNGEAYEDDEHHPR	0	1	Unmodified	1867.751	0.75100254	183	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				1		12.788	12.788	4	0.00051131	3812	DP1063-9	94.673	88.551			2.9271	3.0618	NaN	1	0	Median	11757000	3181500	8575500	1259	183	1204	2778	5734;5735	5734		2	9606
IAAGEKIPLSQEEITLQGHAFEAR	1	1	Unmodified	2607.3657	0.36566515	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0.894		2	1	2		19.02	19.02	3;4	5.9709E-74	11784	DP1063-7	245.63	228.4			0.99484	1.0479	11.264	4	0	Linear	689400000	327350000	362050000	1260	483	1205	2779;2780;2781;2782;2783	5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754	5737		19	9606
IACLDFSLQK	1	0	Unmodified	1193.6114	0.6114445	149	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			19.862	19.862	2	0.041891	12992	DP1063-8	92.838	54.545			NaN	NaN	NaN	0	0	Median	0	0	0	1261	149	1206	2784	5755	5755		1	9606
IADGYEQAAR	0	1	Unmodified	1092.52	0.51998696	222	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			14.673	14.673	2	0.00083776	6364	DP1063-8	93.598	31.133			2.2532	2.3347	NaN	1	0	Median	30243000	10156000	20088000	1262	222	1207	2785	5756;5757	5757		2	9606
IAEEFEVELER	0	1	Unmodified	1362.6667	0.66671078	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.866		3		1		19.894	19.894	2	2.0918E-31	12934	DP1063-7	214.05	169.03			0.96238	0.95414	NaN	1	0	Median	442250000	220680000	221570000	1263	130	1208	2786;2787;2788;2789	5758;5759;5760;5761;5762;5763;5764;5765;5766	5758		9	9606
IAFAITAIK	1	0	Unmodified	946.58515	0.5851534	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	20.059	20.059	2	0.00086584	13825	DP1063-10	99.139	64.314			3.483	2.0662	NaN	1	0	Median	52241000	10391000	41851000	1264	273	1209	2790	5767;5768;5769;5770	5770		4	9606
IAGFDER	0	1	Unmodified	806.39227	0.39226725	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.3	16.3	2	0.018765	6464	DP1063-6	82.305	37.774			0.13431	0.1372	NaN	1	0	Median	80480000	71636000	8844200	1265	318	1210	2791	5771;5772	5771		2	9606
IAGYVTHLMK	1	0	Oxidation (M)	1147.606	0.6059652	115	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	5	0					1	15.281	15.281	2	0.0023006	7632	DP1063-10	86.67	60.565			6.0832	3.6088	NaN	1	0	Median	15580000	2590000	12990000	1266	115	1211	2792	5773;5774	5773	128	2	9606
IALTDNALIAR	0	1	Unmodified	1169.6768	0.67682195	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		19.179	19.179	2	1.8126E-10	12230	DP1063-9	169.12	116.34			11.051	11.56	NaN	1	0	Median	341070000	23743000	317330000	1267	152	1212	2793	5775;5776;5777;5778	5777		4	9606
IANPVEGSTDR	0	1	Unmodified	1157.5677	0.56766543	399	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		15.13	15.13	2	0.014216	6757	DP1063-9	102.62	37.864			NaN	NaN	NaN	0	0	Median	6056600	6056600	0	1268	399	1213	2794	5779;5780;5781	5781		3	9606
IAPYVAHNFSK	1	0	Unmodified	1245.6506	0.6506072	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				15.725	15.725	2;3	1.755E-10	7233	DP1063-7	143.03	143.03			0.90005	0.92743	0.8789	2	0	Median	1057099999.9999999	549040000	508060000	1269	130	1214	2795;2796	5782;5783;5784;5785;5786;5787;5788;5789;5790	5788		9	9606
IAQPGDHVSVTGIFLPILR	0	1	Unmodified	2032.1469	0.14694559	186	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				22.648	22.648	3	0.0067907	16652	DP1063-7	64.327	64.327			1.3792	1.4299	NaN	1	0	Median	13024000	5614400	7409800	1270	186	1215	2797	5791	5791		1	9606
IASLEVENQSLR	0	1	Unmodified	1357.7201	0.72014333	180	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		17.687	17.687	2	9.1808E-05	10201	DP1063-9	136.52	63.636			0.96706	1.0116	NaN	1	0	Median	22335000	11684000	10652000	1271	180	1216	2798	5792;5793;5794;5795	5793		4	9606
IASSIVAQTAGIPTLPWSGSGLR	0	1	Unmodified	2281.243	0.24303082	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.83	0.687		2	3	1		22.84	22.84	2;3	5.7597E-60	16817	DP1063-7	233.47	191.63			0.86278	0.88893	5.7525	5	0	Median	141980000	74990000	66994000	1272	355	1217	2799;2800;2801;2802;2803;2804	5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807;5808;5809;5810;5811;5812;5813	5802		18	9606
IATGHGQQGVTQVVLK	1	0	Unmodified	1634.9104	0.91040372	234	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	2	0		1				15.711	15.711	3	0.0081318	7268	DP1063-7	88.561	47.62			NaN	NaN	NaN	0	0	Median	14313000	0	14313000	1273	234	1218	2805	5814;5815	5814		2	9606
IAVHCTVR	0	1	Unmodified	954.50692	0.50691985	297	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	13.138	13.138	2	0.0018255	5127	DP1063-10	96.253	35.465			6.3416	4.5739	NaN	1	0	Median	13899000	1911600	11987000	1274	297	1219	2806	5816;5817;5818	5816		3	9606
IAVHPDYQGMGYGSR	0	1	Oxidation (M)	1665.7569	0.75693954	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				15.543	15.543	3	0.0026299	6994	DP1063-7	94.532	66.422			NaN	NaN	NaN	0	0	Median	57775000	0	57775000	1275	514	1220	2807	5819;5820	5819	588	2	9606
IAWDDEETRDGFR	0	2	Unmodified	1608.7168	0.71684887	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.75	0.829		2	1	1		18.008	18.008	2;3	0.0037701	10356	DP1063-7	119.27	95.898			1.0632	1.0724	7.5363	4	0	Median	520980000	255540000	265440000	1276	94	1221	2808;2809;2810;2811	5821;5822;5823;5824;5825	5823		4	9606
ICCDLDVLASK	1	0	Unmodified	1292.6105	0.61045823	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.914	18.914	2	1.5293E-05	11732	DP1063-8	142.36	121.52			1.0092	1.0164	NaN	1	0	Median	289720000	138200000	151520000	1277	95	1222	2812	5826;5827	5827		2	9606
ICGDIHGQYTDLLR	0	1	Unmodified	1659.8039	0.80388973	265	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	4	0				1		18.511	18.511	3	0.0092434	11369	DP1063-9	86.803	66.218			NaN	NaN	NaN	0	0	Median	17129000	0	17129000	1278	265	1223	2813	5828	5828		1	9606
ICGDIHGQYYDLLR	0	1	Unmodified	1721.8195	0.8195398	194;264	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.69	0.722			6	5	2	25.049	25.049	2;3	9.2676E-13	12139	DP1063-8	199.4	165.99			NaN	NaN	NaN	0	0	Median	1463699999.9999998	0	1463699999.9999998	1279	194;264	1224	2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826	5829;5830;5831;5832;5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847	5834		19	9606
IDCFSEVPTSVFGEK	1	0	Unmodified	1713.792	0.79198764	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			21.124	21.124	2	0.0061281	14638	DP1063-8	103.44	79.716			NaN	NaN	NaN	0	0	Median	22843000	0	22843000	1280	35	1225	2827	5848;5849	5848		2	9606
IDDFPNELEK	1	0	Unmodified	1218.5768	0.57683314	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				18.542	18.542	2	0.0077533	11050	DP1063-7	121.09	76.645			NaN	NaN	NaN	0	0	Median	15346000	0	15346000	1281	532	1226	2828	5850	5850		1	9606
IDDVVNTR	0	1	Unmodified	930.47706	0.47705951	233	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			3			14.944	14.944	2	0.040226	6744	DP1063-8	90.37	39.034			NaN	NaN	NaN	0	0	Median	9021100	9021100	0	1282	233	1227	2829;2830;2831	5851;5852;5853	5851		3	9606
IDGVSLLVQR	0	1	Unmodified	1098.6397	0.63970816	429	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	4	0				1		19.746	19.746	2	0.008842	13022	DP1063-9	115.7	66.602			NaN	NaN	NaN	0	0	Median	10631000	0	10631000	1283	429	1228	2832	5854;5855	5855		2	9606
IDIIPNPQER	0	1	Unmodified	1193.6404	0.64043645	113	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2	0		1				18.535	18.535	2	0.0054076	11055	DP1063-7	82.287	49.967			0.73514	0.76117	NaN	1	0	Median	26430000	14253000	12177000	1284	113	1229	2833	5856;5857	5856		2	9606
IDKPILK	2	0	Unmodified	825.53239	0.53238955	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		13.98	13.98	2	0.0053422	5223	DP1063-9	120.65	30.972			12.439	13.159	NaN	1	0	Median	47066000	3829600	43237000	1285	298	1230	2834	5858;5859	5859		2	9606
IDLRPVLGEGVPILASFLR	0	2	Unmodified	2064.2095	0.20954585	441	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	2	0		1				25.85	25.85	3	0.00065219	20558	DP1063-7	89.507	89.507			1.4466	1.459	NaN	1	0	Median	6440700	2317300	4123400	1286	441	1231	2835	5860;5861	5860		2	9606
IDLTLLNR	0	1	Unmodified	956.56548	0.56548059	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					20.282	20.282	2	0.0080388	11632	DP1063-6	111.65	26.289			NaN	NaN	NaN	0	0	Median	7552100	0	7552100	1287	431	1232	2836	5862;5863	5863		2	9606
IDTGWLDR	0	1	Unmodified	974.48214	0.48214489	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.17	0.373	5	1				22.438	22.438	2	3.1298E-10	10223	DP1063-6	166.68	85.382			1.0357	1.0324	32.384	3	0	Median	673250000	327160000	346090000	1288	355	1233	2837;2838;2839;2840;2841;2842	5864;5865;5866;5867;5868;5869;5870;5871;5872;5873;5874	5864		10	9606
IEALGGFVSHMDCWR	0	1	Oxidation (M)	1792.8025	0.80250953	227	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	1	0	2	0		1				15.088	15.088	2	0.0024853	6441	DP1063-7	83.862	58.388			1.1773	1.2215	NaN	1	0	Median	16985000	8034000	8950600	1289	227	1234	2843	5875;5876;5877;5878;5879	5879	263	5	9606
IEDFLER	0	1	Unmodified	920.46035	0.46034682	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	18.559	18.559	2	0.00011532	11730	DP1063-10	138.24	78.633			17.03	12.283	NaN	1	0	Median	248760000	13409000	235350000	1290	217	1235	2844	5880;5881;5882;5883	5881		4	9606
IEDLSQQAQLAAAEK	1	0	Unmodified	1613.8261	0.82606496	29	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	4	0				2		17.802	17.802	2	0.0053759	10335	DP1063-9	105.65	65.779			NaN	NaN	NaN	0	0	Median	6358300	0	6358300	1291	29	1236	2845;2846	5884;5885	5884		2	9606
IEDVTPIPSDSTR	0	1	Unmodified	1428.7096	0.70963822	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	17.303	17.303	2	1.4337E-06	10086	DP1063-10	163.9	138.77			3.8799	2.7984	NaN	1	0	Median	93588000	17256000	76332000	1292	271	1237	2847	5886;5887;5888;5889;5890	5889		5	9606
IEDVTPIPSDSTRR	0	2	Unmodified	1584.8107	0.81074925	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					2	16.173	16.173	2;3	0.0017802	8758	DP1063-10	132.25	96.539			NaN	NaN	NaN	0	0	Median	68034000	0	68034000	1293	271	1238	2848;2849	5891;5892;5893	5892		3	9606
IEEELGSK	1	0	Unmodified	903.45493	0.45492709	104	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		14.256	14.256	2	0.0021313	5601	DP1063-9	113.41	72.839			0.66106	0.67946	NaN	1	0	Median	18601000	12898000	5703200	1294	104	1239	2850	5894;5895;5896;5897	5895		4	9606
IEEVPELPLVVEDK	1	0	Unmodified	1607.8658	0.86580451	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		21.646	21.646	2	0.001795	15445	DP1063-9	105.36	105.36			5.2025	5.3473	NaN	1	0	Median	21794000	2550100	19244000	1295	193	1240	2851	5898;5899;5900	5899		3	9606
IEEVPELPLVVEDKVEGYK	2	0	Unmodified	2184.1566	0.15656681	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		21.448	21.448	2	0.0058358	15282	DP1063-9	98.253	64.07			NaN	NaN	NaN	0	0	Median	4453300	0	4453300	1296	193	1241	2852;2853	5901;5902	5902		2	9606
IEEVPELPLVVEDKVEGYKK	3	0	Unmodified	2312.2515	0.25152982	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	2	4	0				1		20.253	20.253	4	0.0079412	13765	DP1063-9	81.357	63.004			NaN	NaN	NaN	0	0	Median	25840000	0	25840000	1297	193	1242	2854	5903;5904	5904		2	9606
IEEYNHVLIEETDQLWK	1	0	Unmodified	2158.0582	0.058249746	378	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				21.396	21.396	3	0.00073812	15010	DP1063-7	121.03	74.667			NaN	NaN	NaN	0	0	Median	13129000	0	13129000	1298	378	1243	2855	5905;5906	5906		2	9606
IEGDMIVCAAYAHELPK	1	0	Oxidation (M)	1931.9121	0.91211956	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	4	0				1		18.888	18.888	2	7.2771E-06	11845	DP1063-9	148.96	105.35			NaN	NaN	NaN	0	0	Median	8546700	0	8546700	1299	214	1244	2856	5907;5908	5907	250	2	9606
IEGDMIVCAAYAHELPK	1	0	Unmodified	1915.9172	0.91720493	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		19.632	19.632	3	0.00031911	12856	DP1063-9	130.02	102.08			NaN	NaN	NaN	0	0	Median	17590000	0	17590000	1300	214	1244	2857	5909;5910;5911	5909		3	9606
IEIESFYEGEDFSETLTR	0	1	Unmodified	2163.9848	0.98481003	127	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	2	0		1				22.64	22.64	2	5.391E-10	16595	DP1063-7	162.48	140.92			NaN	NaN	NaN	0	0	Median	12328000	0	12328000	1301	127	1245	2858	5912;5913;5914	5912		3	9606
IEIHEQEAILHNFSSTNPTQVNGSVIDEPVR	0	1	Unmodified	3472.7223	0.72227518	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				19.988	19.988	3	1.4591E-17	13080	DP1063-7	132.51	111.92			NaN	NaN	NaN	0	0	Median	33641000	0	33641000	1302	211	1246	2859	5915	5915		1	9606
IEISELNR	0	1	Unmodified	972.52401	0.52400971	88;20	P35908;CON__P35908v2;CON__P35908;P04264;CON__P04264	KRT2;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1	no	no	0	0	0	4	0				1		17.297	17.297	2	0.0031141	9647	DP1063-9	143.85	29.132		+	NaN	NaN	NaN	0	0	Median	29754000	29754000	0	1303	20;88	1247	2860	5916;5917	5917		2	9606
IENLSNLHQLQMLELGSNR	0	1	Oxidation (M)	2224.127	0.12701479	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		19.842	19.842	3	0.038455	13097	DP1063-9	61.276	29.393			NaN	NaN	NaN	0	0	Median	63082000	0	63082000	1304	405	1248	2861	5918	5918		1	9606
IENLSNLHQLQMLELGSNR	0	1	Unmodified	2208.1321	0.13210017	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		20.599	20.599	3	3.719E-24	14148	DP1063-9	195.48	134.99			NaN	NaN	NaN	0	0	Median	16516000	0	16516000	1305	405	1248	2862	5919;5920	5919		2	9606
IEQLQNHENEDIYK	1	0	Unmodified	1771.8377	0.83769228	37	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	3	0			1			15.761	15.761	2	1.8077E-11	7785	DP1063-8	190.35	125.07			NaN	NaN	NaN	0	0	Median	13972000	0	13972000	1306	37	1249	2863	5921;5922	5922		2	9606
IETIEVMEDR	0	1	Oxidation (M)	1249.586	0.58601761	235	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	4	0				1		16.547	16.547	2	0.014585	8659	DP1063-9	111.06	48.861			NaN	NaN	NaN	0	0	Median	9537000	0	9537000	1307	235	1250	2864	5923	5923	268	1	9606
IETNENNLESAK	1	0	Unmodified	1360.647	0.64703797	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			14.651	14.651	2	3.209E-15	6319	DP1063-8	185.6	185.6			0.7051	0.71015	NaN	1	0	Median	35070000	21373000	13697000	1308	344	1251	2865	5924;5925	5924		2	9606
IEVIEIMTDR	0	1	Oxidation (M)	1233.6275	0.6274885	118	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		18.528	18.528	2	0.00021522	11332	DP1063-9	109.66	65.856			9.6777	10.123	NaN	1	0	Median	76592000	6828700	69763000	1309	118	1252	2866	5926;5927	5926	132	2	9606
IEVIEIMTDR	0	1	Unmodified	1217.6326	0.63257388	118	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		20.932	20.932	2	0.0023409	14568	DP1063-9	138.4	74.91			NaN	NaN	NaN	0	0	Median	11733000	0	11733000	1310	118	1252	2867	5928;5929	5928		2	9606
IFCCHGGLSPDLQSMEQIR	0	1	Oxidation (M)	2263.0184	0.018392316	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	0	3.8	0.748			2	2	1	17.963	17.963	2;3	1.9954E-16	10397	DP1063-8	170.48	149.25			NaN	NaN	NaN	0	0	Median	1048499999.9999999	0	1048499999.9999999	1311	194;264;265	1253	2868;2869;2870;2871;2872	5930;5931;5932;5933;5934;5935;5936;5937;5938;5939;5940;5941	5931	217	12	9606
IFCCHGGLSPDLQSMEQIR	0	1	Unmodified	2247.0235	0.023477694	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			2	2		19.685	19.685	2;3	2.2546E-28	12760	DP1063-8	202.13	168.92			NaN	NaN	NaN	0	0	Median	215050000	0	215050000	1312	194;264;265	1253	2873;2874;2875;2876	5942;5943;5944;5945;5946;5947;5948	5944		7	9606
IFCCHGGLSPDLQSMEQIRR	0	2	Unmodified	2403.1246	0.12458872	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3	0			1			18.566	18.566	4	0.0035767	11373	DP1063-8	83.966	46.854			NaN	NaN	NaN	0	0	Median	46145000	0	46145000	1313	194;264;265	1254	2877	5949;5950	5949		2	9606
IFCCHGGLSPDLQSMEQIRR	0	2	Oxidation (M)	2419.1195	0.11950334	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	1	4	0				2		17.007	17.007	3;4	0.034588	9231	DP1063-9	75.877	48.545			NaN	NaN	NaN	0	0	Median	150580000	0	150580000	1314	194;264;265	1254	2878;2879	5951;5952	5951	217	2	9606
IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR	1	1	Oxidation (M)	3970.7666	0.76658412	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					20.254	20.254	4	4.8533E-07	11570	DP1063-6	65.298	59.066			0.47093	0.49734	NaN	1	0	Median	20873000	12175000	8698400	1315	355	1255	2880	5953;5954;5955	5954	424	3	9606
IFGYPVGIVGNNGVLFSESAK	1	0	Unmodified	2167.1314	0.13135511	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		23.214	23.214	2;3	1.0362E-96	17229	DP1063-8	284.91	284.91			1.0256	1.0542	7.7035	3	0	Median	707730000	335270000	372460000	1316	524	1256	2881;2882;2883;2884	5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968	5958		13	9606
IFGYPVGIVGNNGVLFSESAKK	2	0	Unmodified	2295.2263	0.22631813	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			21.639	21.639	3	1.997E-07	15389	DP1063-8	111.82	93.602			1.2166	1.1843	NaN	1	0	Median	40020000	17006000	23014000	1317	524	1257	2885	5969;5970	5969		2	9606
IFTSIGEDYDER	0	1	Unmodified	1443.6518	0.65178899	188	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		18.739	18.739	2	0.0067818	11638	DP1063-9	109.42	52.503			NaN	NaN	NaN	0	0	Median	7388700	7388700	0	1318	188	1258	2886	5971	5971		1	9606
IFVGGIKEDTEEYNLR	1	1	Unmodified	1881.9472	0.94724273	235	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		18.684	18.684	3	0.00046074	11579	DP1063-9	125.36	92.54			NaN	NaN	NaN	0	0	Median	10085000	0	10085000	1319	235	1259	2887	5972;5973	5972		2	9606
IFVGGLSPDTPEEK	1	0	Unmodified	1487.7508	0.75077476	375	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		18.762	18.762	2	0.0022535	11700	DP1063-9	97.734	65.891			1.3779	1.4162	NaN	1	0	Median	12593000	5958800	6634200	1320	375	1260	2888	5974;5975;5976	5975		3	9606
IGEEEIQKPEEK	2	0	Unmodified	1427.7144	0.71438925	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				14.491	14.491	2	2.0724E-05	5583	DP1063-7	178.46	124.97			NaN	NaN	NaN	0	0	Median	6414300	6414300	0	1321	406	1261	2889	5977;5978	5978		2	9606
IGGIGTVPVGR	0	1	Unmodified	1024.6029	0.60292873	309	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.5	1.5	1			1		17.335	17.335	2	3.2945E-05	9648	DP1063-9	128.36	91.966			1.1107	1.1573	12.143	2	0	Median	90475000	41452000	49023000	1322	309	1262	2890;2891	5979;5980;5981;5982;5983;5984	5984		6	9606
IGGVQQDTILAEGLHFR	0	1	Unmodified	1852.9795	0.97954591	485	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		20.498	20.498	3	6.3503E-37	13991	DP1063-9	224.67	197.17			0.8534	0.89269	NaN	1	0	Median	35014000	18636000	16378000	1323	485	1263	2892	5985;5986;5987;5988	5985		4	9606
IGHVGMQIEHIIENIVAVTK	1	0	Oxidation (M)	2216.1987	0.19872317	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	1	0	3	0			1			23.82	23.82	4	0.00013283	18036	DP1063-8	117.65	101.64			NaN	NaN	NaN	0	0	Median	12583000	0	12583000	1324	75	1264	2893	5989;5990	5990	69	2	9606
IGLAEEIR	0	1	Unmodified	899.50763	0.50763136	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.25	0.433	3	1				20.033	20.033	2	0.0022584	9824	DP1063-7	101.64	19.859			0.7322	0.76494	15.48	4	0	Median	1484099999.9999998	740210000	743870000	1325	355	1265	2894;2895;2896;2897	5991;5992;5993;5994;5995;5996;5997;5998;5999;6000	5999		10	9606
IGPLGLSPK	1	0	Unmodified	880.5382	0.53820321	181	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.939	17.939	2	0.021818	10873	DP1063-10	71.877	15.756			9.2954	5.5144	NaN	1	0	Median	124570000	11469000	113100000	1326	181	1266	2898	6001;6002	6001		2	9606
IGPYQPNVPVGIDYVIPK	1	0	Unmodified	1968.072	0.072049316	209	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				22.032	22.032	2	0.0011878	15808	DP1063-7	92.039	92.039			1.9555	2.015	NaN	1	0	Median	15071000	6033200	9037300	1327	209	1267	2899	6003	6003		1	9606
IGQTKPVVVYR	1	1	Unmodified	1258.7398	0.73975656	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				14.93	14.93	3	0.005252	6180	DP1063-7	102.06	73.105			NaN	NaN	NaN	0	0	Median	57551000	0	57551000	1328	532	1268	2900	6004;6005	6005		2	9606
IGSFGPQEDLLFLR	0	1	Unmodified	1590.8406	0.84059282	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.21	0.663	26	1	1	1		32.16	32.16	2;3	7.0941E-33	15128	DP1063-6	225.93	188.38			0.94181	0.97382	12.208	14	0	Median	1312100000	668900000	643240000	1329	355	1269	2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929	6006;6007;6008;6009;6010;6011;6012;6013;6014;6015;6016;6017;6018;6019;6020;6021;6022;6023;6024;6025;6026;6027;6028;6029;6030;6031;6032;6033;6034;6035;6036;6037;6038;6039;6040;6041;6042;6043;6044;6045;6046;6047;6048;6049;6050;6051;6052;6053;6054;6055;6056;6057;6058;6059;6060;6061;6062;6063;6064;6065;6066;6067;6068;6069;6070	6007		64	9606
IHAFVQDTTLSEPR	0	1	Unmodified	1612.8209	0.82092001	451	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				17.265	17.265	3	0.040031	9380	DP1063-7	69.92	46.039			NaN	NaN	NaN	0	0	Median	26177000	0	26177000	1330	451	1270	2930	6071	6071		1	9606
IHEGCEEPATHNALAK	1	0	Unmodified	1775.8261	0.82608174	328	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					13.454	13.454	3	0.0018088	2994	DP1063-6	80.507	80.507			1.063	1.0843	NaN	1	0	Median	4572600	2385200	2187400	1331	328	1271	2931	6072;6073;6074	6073		3	9606
IHFPLATYAPVISAEK	1	0	Unmodified	1755.956	0.95595693	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		20.705	20.705	2;3	0.00066361	13969	DP1063-9	100.68	100.68			2.6508	2.7245	NaN	1	0	Median	164210000	16070000	148140000	1332	310;434;492	1272	2932;2933	6075;6076;6077;6078;6079;6080	6078		6	9606
IHNANPELTDGQIQAMLR	0	1	Oxidation (M)	2036.0109	0.010922397	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.71	1.48	2	2		2	1	17.349	17.349	2;3	1.1457E-05	9815	DP1063-9	145.79	128.17			0.86586	0.84797	17.289	5	0	Median	430680000	227510000	203170000	1333	355	1273	2934;2935;2936;2937;2938;2939;2940	6081;6082;6083;6084;6085;6086;6087;6088;6089;6090;6091;6092;6093;6094;6095;6096;6097;6098	6095	425	18	9606
IHNANPELTDGQIQAMLR	0	1	Unmodified	2020.016	0.016007775	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					19.292	19.292	2;3	9.897800000000001E-62	10271	DP1063-6	247.02	227.08			0.90505	0.92486	3.5644	2	0	Median	176210000	94585000	81627000	1334	355	1273	2941;2942	6099;6100;6101;6102;6103;6104;6105;6106	6099		8	9606
IHPMAYQLQLQAASNFK	1	0	Oxidation (M)	1974.9986	0.9985668	307	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	1	0	5	0					1	18.694	18.694	3	0.00082039	11989	DP1063-10	110.22	74.505			NaN	NaN	NaN	0	0	Median	13617000	0	13617000	1335	307	1274	2943	6107	6107	361	1	9606
IHQEGDALPGHSKPSR	1	1	Unmodified	1727.8703	0.87032982	411	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	1	3	0			1			12.634	12.634	4	0.0010018	3802	DP1063-8	104.94	70.507			NaN	NaN	NaN	0	0	Median	18895000	0	18895000	1336	411	1275	2944	6108	6108		1	9606
IHVWNGESGIK	1	0	Unmodified	1238.6408	0.6407708	433	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		16.326	16.326	2	0.03363	8451	DP1063-9	83.998	49.612			NaN	NaN	NaN	0	0	Median	13197000	0	13197000	1337	433	1276	2945	6109	6109		1	9606
IIAHAQLLEQHR	0	1	Unmodified	1427.7997	0.79973106	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					15.148	15.148	3	5.3122E-05	5059	DP1063-6	128.08	106.32			3.8484	4.021	NaN	1	0	Median	12828000	3360400	9467300	1338	179	1277	2946	6110;6111	6110		2	9606
IIAPPER	0	1	Unmodified	794.46504	0.46503826	252;308	P63261;P60709;Q562R1;P68133;P68032;P63267;P62736	ACTG1;ACTB;ACTBL2;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	4	0				1		14.88	14.88	2	0.0037058	6443	DP1063-9	118.69	31.105			NaN	NaN	NaN	0	0	Median	23402000	0	23402000	1339	252;308	1278	2947	6112;6113	6113		2	9606
IIDVVYNASNNELVR	0	1	Unmodified	1717.8999	0.89989861	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					20	24.872	24.872	2;3	1.8861999999999998E-44	13448	DP1063-10	231.17	231.17			11.007	7.939	8.1492	2	0	Median	299640000	26681000	272960000	1340	267	1279	2948;2949;2950;2951;2952;2953;2954;2955;2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967	6114;6115;6116;6117;6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133;6134;6135;6136;6137;6138;6139	6115		26	9606
IIEDQQESLNK	1	0	Unmodified	1315.662	0.66195975	99	P05455	SSB	Lupus La protein	yes	yes	0	0	0	4	0				1		15.013	15.013	2	0.00019491	6599	DP1063-9	153.05	92.609			NaN	NaN	NaN	0	0	Median	7600000	0	7600000	1341	99	1280	2968	6140;6141	6141		2	9606
IIEEAPAPGIK	1	0	Unmodified	1136.6441	0.64412484	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.471	16.471	2	5.6008E-06	8585	DP1063-9	149.94	149.94			0.87001	0.89648	6.6824	3	0	Median	918600000	470420000	448180000	1342	483	1281	2969;2970;2971	6142;6143;6144;6145;6146;6147;6148;6149;6150;6151;6152	6151		11	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Oxidation (M)	2670.3033	0.30332417	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				19.605	19.605	2;3	1.7431E-10	10908	DP1063-6	110.4	95.276			0.83734	0.85417	8.2015	3	0	Plateau	362270000	188570000	173700000	1343	355	1282	2972;2973;2974	6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166	6157	426	14	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Unmodified	2654.3084	0.30840955	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				21.295	21.295	2;3	1.1342E-15	12993	DP1063-6	166.52	166.52			0.84299	0.85993	7.0086	3	0	Median	197810000	102310000	95502000	1344	355	1282	2975;2976;2977	6167;6168;6169;6170;6171;6172;6173	6171		7	9606
IIEFVPTK	1	0	Unmodified	945.55352	0.55351892	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1		1		1		18.469	18.469	2	0.0018255	11017	DP1063-7	116.9	47.471			0.82163	0.84557	4.5329	2	0	Median	140730000	71842000	68888000	1345	355	1283	2978;2979	6174;6175;6176;6177;6178;6179;6180;6181	6177		8	9606
IIEFVPTKTPYDPR	1	1	Unmodified	1674.8981	0.8981077	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.896	18.896	3	0.004959	9814	DP1063-6	68.034	68.034			0.77618	0.8197	NaN	1	0	Median	10829000	5794300	5034300	1346	355	1284	2980	6182	6182		1	9606
IIEVGDTPKDR	1	1	Unmodified	1241.6616	0.66156582	260	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	1	1	0	1					14.802	14.802	3	0.029473	4663	DP1063-6	70.728	34.408			NaN	NaN	NaN	0	0	Median	3460200	0	3460200	1347	260	1285	2981	6183	6183		1	9606
IIGATDSSGELMFLMK	1	0	2 Oxidation (M)	1743.8423	0.84230866	359	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	yes	no	0	2	0	5	0					1	20.416	20.416	2	0.00011307	14242	DP1063-10	119.74	85.877			NaN	NaN	NaN	0	0	Median	0	0	0	1348	359	1286	2982	6184	6184	459;460	1	9606
IIGLDQVAGMSETALPGAFK	1	0	Oxidation (M)	2033.0503	0.050327596	191	P35579	MYH9	Myosin-9	yes	yes	0	1	0	1	0	1					21.884	21.884	2	0.0012735	13669	DP1063-6	88.78	88.78			1.721	1.7556	NaN	1	0	Median	4307900	1771200	2536700	1349	191	1287	2983	6185	6185	211	0	9606
IIKPLQYQSTVASGTVAR	1	1	Unmodified	1931.084	0.084010986	371	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	1	2	0		1				17.393	17.393	3	0.0063227	9534	DP1063-7	89.468	62.261			NaN	NaN	NaN	0	0	Median	40931000	0	40931000	1350	371	1288	2984	6186;6187	6187		2	9606
IILDLISESPIK	1	0	Unmodified	1339.7963	0.79626839	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.33	0.471			2	1		22.552	22.552	2	0.0041013	16591	DP1063-9	123.75	77.287			NaN	NaN	NaN	0	0	Median	15387000	0	15387000	1351	262	1289	2985;2986;2987	6188;6189;6190;6191;6192	6191		5	9606
IINDNATYCR	0	1	Unmodified	1238.5714	0.5713706	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			14.993	14.993	2	0.01566	6803	DP1063-8	99.802	58.373			NaN	NaN	NaN	0	0	Median	35922000	0	35922000	1352	35	1290	2988	6193	6193		1	9606
IINEPTAAAIAYGLDK	1	0	Unmodified	1658.8879	0.88793694	128;127	P11142;P54652;P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	no	no	0	0	0	3	0			1			20.623	20.623	2	0.0010332	13994	DP1063-8	119.39	72.59			2.634	2.6529	NaN	1	0	Median	45351000	14478000	30873000	1353	128;127	1291	2989	6194;6195	6194		2	9606
IINEPTAAAIAYGLDKK	2	0	Unmodified	1786.9829	0.98289996	128	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	2.5	0.5		2	2			19.232	19.232	2;3	5.4859E-05	12037	DP1063-7	109.66	89.482			3.2394	3.2468	8.5525	2	0	Median	230720000	51264000	179460000	1354	128	1292	2990;2991;2992;2993	6196;6197;6198;6199;6200;6201	6196		6	9606
IINEPTAAAIAYGLDKR	1	1	Unmodified	1814.989	0.98904797	127	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	2	0		1				19.488	19.488	3	0.00065012	12421	DP1063-7	97.579	63.882			NaN	NaN	NaN	0	0	Median	0	0	0	1355	127	1293	2994	6202	6202		1	9606
IINEPTAAAIAYGLDR	0	1	Unmodified	1686.8941	0.89408495	124;145	P17066;P0DMV9;P0DMV8	HSPA6;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0.378		1	12	1		20.879	20.879	2;3	4.0493000000000004E-24	14322	DP1063-8	206.32	113.7			3.8574	4.0005	13.269	4	0	Median	801350000	156080000	645270000	1356	145;124	1294	2995;2996;2997;2998;2999;3000;3001;3002;3003;3004;3005;3006;3007;3008	6203;6204;6205;6206;6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218;6219;6220;6221;6222;6223	6207		21	9606
IIPGFMCQGGDFTR	0	1	Oxidation (M)	1613.733	0.73303298	299	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	1	0	5	0					1	19.355	19.355	2	0.033768	12781	DP1063-10	52.391	38.305			0.61053	0.44035	NaN	1	0	Median	25397000	16816000	8581300	1357	299	1295	3009	6224	6224		1	9606
IIPPQPMEGLGFLDALNSAPVPGIK	1	0	Oxidation (M)	2589.3876	0.38764615	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2	0		1				24.05	24.05	2	0.0053779	18455	DP1063-7	82.578	60.764			NaN	NaN	NaN	0	0	Median	4531900	0	4531900	1358	482	1296	3010	6225;6226;6227;6228	6228	548	4	9606
IIQLLDDYPK	1	0	Unmodified	1216.6703	0.67033959	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4.25	0.433				3	1	20.389	20.389	2	3.2274E-05	13856	DP1063-9	130.96	77.47			10.483	10.774	NaN	1	0	Median	155930000	12936000	142990000	1359	98	1297	3011;3012;3013;3014	6229;6230;6231;6232;6233;6234;6235;6236	6233		8	9606
IIQQAGQVWFPDSAFK	1	0	Unmodified	1833.9414	0.94136949	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.4	0.879	12	1	1	1		24.867	24.867	2;3	8.9753E-45	15443	DP1063-7	230.81	230.81			1.0963	1.1183	28.023	7	0	Median	281980000	136120000	145860000	1360	355	1298	3015;3016;3017;3018;3019;3020;3021;3022;3023;3024;3025;3026;3027;3028;3029	6237;6238;6239;6240;6241;6242;6243;6244;6245;6246;6247;6248;6249;6250;6251;6252;6253;6254;6255;6256;6257;6258;6259;6260;6261;6262;6263;6264;6265;6266;6267;6268;6269;6270;6271	6262		35	9606
IIQQAGQVWFPDSAYK	1	0	Unmodified	1849.9363	0.93628412	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.001	21.001	2	2.6886E-05	12207	DP1063-6	140.78	96.355			0.89479	0.91277	NaN	1	0	Median	15985000	7355300	8629900	1361	38	1299	3030;3031	6272;6273;6274	6274		3	9606
IIQVGNR	0	1	Unmodified	798.47119	0.47118627	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				14.461	14.461	2	0.045571	5556	DP1063-7	91.093	5.787			NaN	NaN	NaN	0	0	Median	17867000	0	17867000	1362	316	1300	3032	6275	6275		1	9606
IISNASCTTNCLAPLAK	1	0	Unmodified	1832.9125	0.91245391	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		17.996	17.996	2	8.0093E-05	10594	DP1063-9	147.96	123.69			0.63722	0.65495	NaN	1	0	Median	19100000	12954000	6146100	1363	89	1301	3033	6276;6277;6278;6279	6276		4	9606
IITHPNFNGNTLDNDIMLIK	1	0	Oxidation (M)	2298.1678	0.16781697	8	CON__P00761			yes	yes	0	1	0	2.95	1.21	6	10	13	10	5	29.128	29.128	2;3	5.811E-51	13613	DP1063-7	237.59	211.68		+	NaN	NaN	NaN	0	0	Median	7597099999.999999	7597099999.999999	0	1364	8	1302	3034;3035;3036;3037;3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077	6280;6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311;6312;6313;6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338;6339;6340;6341;6342;6343;6344;6345;6346;6347;6348;6349	6299	1	70	
IITHPNFNGNTLDNDIMLIK	1	0	Unmodified	2282.1729	0.17290235	8	CON__P00761			yes	yes	0	0	0	3	1.41	2	2	2	2	2	20.914	20.914	2;3	3.2135E-60	12477	DP1063-6	230.67	193.73		+	NaN	NaN	NaN	0	0	Median	3006499999.9999995	3006499999.9999995	0	1365	8	1302	3078;3079;3080;3081;3082;3083;3084;3085;3086;3087	6350;6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372;6373;6374	6358		25	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	1	1	Unmodified	3308.7187	0.71871013	8	CON__P00761			yes	yes	0	0	1	3	0			1			21.8	21.8	3	1.254E-28	15523	DP1063-8	183.12	163.13		+	NaN	NaN	NaN	0	0	Median	85927000	85927000	0	1366	8	1303	3088	6375;6376	6375		2	
IITITGTQDQIQNAQYLLQNSVK	1	0	Unmodified	2588.381	0.38098087	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			22.715	22.715	2;3	4.2852E-63	16632	DP1063-8	233.47	197.36			NaN	NaN	NaN	0	0	Median	38780000	0	38780000	1367	262	1304	3089;3090	6377;6378;6379;6380	6379		4	9606
IITLAGPTNAIFK	1	0	Unmodified	1357.7969	0.79693709	399	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		21.164	21.164	2	0.0015215	14829	DP1063-9	105.86	82.946			1.6442	1.69	NaN	1	0	Median	17517000	6238900	11278000	1368	399	1305	3091	6381;6382	6381		2	9606
IITLTGPTNAIFK	1	0	Unmodified	1387.8075	0.80750177	398	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		21.118	21.118	2	0.003097	14807	DP1063-9	120.27	60.253			NaN	NaN	NaN	0	0	Median	5504700	0	5504700	1369	398	1306	3092	6383	6383		1	9606
IIVDELKQEVISTSSK	2	0	Unmodified	1787.988	0.98804492	305	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	1	4	0				1		19.335	19.335	2	0.0036445	12483	DP1063-9	136.33	101.32			NaN	NaN	NaN	0	0	Median	5583700	0	5583700	1370	305	1307	3093	6384	6384		1	9606
IKEWYEK	2	0	Unmodified	994.51238	0.51238239	16	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1	0	1					15.481	15.481	2	0.0033866	5485	DP1063-6	137.18	74.032		+	NaN	NaN	NaN	0	0	Median	11420000	11420000	0	1371	16	1308	3094	6385;6386	6385		2	9606
IKFEMEQNLR	1	1	Oxidation (M)	1322.6653	0.66527099	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2	1	1		1			15.64	15.64	3	0.012833	7599	DP1063-8	112.71	58.645		+	NaN	NaN	NaN	0	0	Median	96653000	96653000	0	1372	19	1309	3095;3096	6387;6388	6388	11	2	9606
IKYPENFFLLR	1	1	Unmodified	1438.7973	0.79727144	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.8	0.748			2	2	1	20.881	20.881	2;3	6.3021E-07	14291	DP1063-8	192.44	159.96			NaN	NaN	NaN	0	0	Median	684550000	0	684550000	1373	194;264;265	1310	3097;3098;3099;3100;3101	6389;6390;6391;6392;6393;6394;6395;6396;6397;6398	6392		10	9606
ILDPEGLALGAVIASSK	1	0	Unmodified	1652.9349	0.93488713	448	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	3	1		1		1		23.279	23.279	2	0.00053058	17395	DP1063-7	133.04	103.35			NaN	NaN	NaN	0	0	Median	21786000	0	21786000	1374	448	1311	3102;3103	6399;6400;6401;6402	6400		4	9606
ILDSVGIEADDDR	0	1	Unmodified	1416.6733	0.67325272	97	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	18.214	18.214	2	0.0011794	11336	DP1063-10	134.57	84.458			NaN	NaN	NaN	0	0	Median	5519800	0	5519800	1375	97	1312	3104	6403;6404	6403		2	9606
ILDSVGIEADDDRLNK	1	1	Unmodified	1771.8952	0.89520716	97	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	1	5	0					2	17.852	17.852	2;3	9.8438E-50	10821	DP1063-10	269.04	226.24			13.306	13.131	NaN	1	0	Median	116610000	6398100	110210000	1376	97	1313	3105;3106	6405;6406;6407;6408;6409;6410	6410		6	9606
ILDVGFEEELK	1	0	Unmodified	1290.6707	0.67073352	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2	0		1				20.741	20.741	2	0.01483	14123	DP1063-7	101.65	53.363			NaN	NaN	NaN	0	0	Median	4353400	0	4353400	1377	537	1314	3107	6411	6411		1	9606
ILDVGFEEELKQIIK	2	0	Unmodified	1772.9924	0.99240201	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	2	0		1				22.919	22.919	3	0.00080586	16946	DP1063-7	119.62	78.389			NaN	NaN	NaN	0	0	Median	6021200	0	6021200	1378	537	1315	3108	6412;6413	6413		2	9606
ILGADTSVDLEETGR	0	1	Unmodified	1574.7788	0.77878042	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	4	0				1		18.834	18.834	2	6.0101E-05	11784	DP1063-9	140.63	88.679			NaN	NaN	NaN	0	0	Median	6468200	0	6468200	1379	170	1316	3109	6414;6415	6414		2	9606
ILGLLDAYLK	1	0	Unmodified	1117.6747	0.67469669	175	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3.5	0.5			1	1		23.341	23.341	2	0.0036366	17643	DP1063-9	86.67	53.858			1.0613	1.0798	38.692	2	0	Median	18580000	8047100	10533000	1380	175	1317	3110;3111	6416;6417;6418;6419	6419		4	9606
ILGPGLNK	1	0	Unmodified	810.49634	0.49633839	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	15.897	15.897	2	0.0020144	8363	DP1063-10	122.15	54.121			9.75	5.784	NaN	1	0	Median	133130000	13013000	120110000	1381	295	1318	3112	6420;6421;6422	6421		3	9606
ILHTLLASGEDALDFTQESEPSYISDVGPPGR	0	1	Unmodified	3413.6627	0.66269462	450	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	2	0		1				22.586	22.586	3	1.9499E-07	16527	DP1063-7	84.561	62.001			NaN	NaN	NaN	0	0	Median	6590000	0	6590000	1382	450	1319	3113	6423;6424	6423		2	9606
ILITTVPPNLR	0	1	Unmodified	1235.7602	0.76015765	350	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		19.442	19.442	2	0.00075934	12579	DP1063-9	145.16	87.978			NaN	NaN	NaN	0	0	Median	20753000	0	20753000	1383	350	1320	3114	6425;6426;6427	6425		3	9606
ILMEHIHK	1	0	Oxidation (M)	1035.5535	0.55353569	324	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	1	0	5	0					1	12.879	12.879	2	0.031155	4882	DP1063-10	101.28	51.158			NaN	NaN	NaN	0	0	Median	13292000	0	13292000	1384	324	1321	3115	6428	6428	389	1	9606
ILMVGLDAAGK	1	0	Oxidation (M)	1102.6056	0.60563084	151	P18085;P84085;P84077;P61204	ARF4;ARF5;ARF1;ARF3	ADP-ribosylation factor 4;ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3	yes	no	0	1	0	5	0					1	18.139	18.139	2	0.02774	11259	DP1063-10	72.607	33.831			1.3682	0.81169	NaN	1	0	Median	9445400	3396800	6048600	1385	151	1322	3116	6429	6429	179	0	9606
ILNVPQELYEK	1	0	Unmodified	1344.7289	0.7289171	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.32	0.798	16	1	1	1		26.235	26.235	2	7.1083E-17	10585	DP1063-6	197.27	170.22			0.90168	0.9198	10.291	8	0	Median	1037899999.9999999	521980000	515900000	1386	355	1323	3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135	6430;6431;6432;6433;6434;6435;6436;6437;6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453;6454;6455;6456;6457;6458;6459;6460;6461;6462;6463;6464;6465;6466;6467;6468;6469	6432		40	9606
ILPTLEAVAALGNK	1	0	Unmodified	1408.829	0.8289655	350	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		21.931	21.931	2	0.0010296	15829	DP1063-9	134.84	89.686			4.8999	5.0362	NaN	1	0	Median	19911000	2751300	17159000	1387	350	1324	3136	6470;6471	6471		2	9606
ILQDDVACDIIK	1	0	Unmodified	1401.7174	0.71736614	368	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		19.515	19.515	2	0.013511	12741	DP1063-9	99.568	46.843			NaN	NaN	NaN	0	0	Median	8100900	0	8100900	1388	368	1325	3137	6472;6473	6472		2	9606
ILQNEPLPER	0	1	Unmodified	1207.6561	0.65608651	82	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3.5	0.5			1	1		16.465	16.465	2	0.012147	8717	DP1063-8	106.6	46.163			NaN	NaN	NaN	0	0	Median	20163000	0	20163000	1389	82	1326	3138;3139	6474;6475	6474		2	9606
ILSGVVTK	1	0	Unmodified	815.51165	0.5116541	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	15.644	15.644	2	0.0022059	8074	DP1063-10	101.28	16.925			5.6697	3.3635	NaN	1	0	Median	147950000	23636000	124320000	1390	275	1327	3140	6476;6477;6478	6476		3	9606
ILSHNPETQQVDIEILSSLPALR	0	1	Unmodified	2572.3861	0.38606625	197	P38432	COIL	Coilin	yes	yes	0	0	0	3	0			1			22.683	22.683	3	0.016719	16658	DP1063-8	68.705	45.051			NaN	NaN	NaN	0	0	Median	4720400	0	4720400	1391	197	1328	3141	6479	6479		1	9606
ILSISADIETIGEILKK	2	0	Unmodified	1842.0714	0.071380614	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	3	0			2			24.23	24.23	3	9.049E-06	18642	DP1063-8	110.97	92.14			NaN	NaN	NaN	0	0	Median	7239500	0	7239500	1392	262	1329	3142;3143	6480;6481	6481		2	9606
ILTFDQLALDSPK	1	0	Unmodified	1459.7922	0.79224564	342	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					2	21.807	21.807	2	2.2513E-32	15894	DP1063-10	225.67	151.3			12.376	7.3421	NaN	1	0	Median	172600000	14437000	158160000	1393	342	1330	3144;3145	6482;6483;6484;6485;6486	6482		5	9606
ILTGSSLVTHQGEVPLQGGK	1	0	Unmodified	2020.0953	0.095303954	589				yes	yes	0	0	0	1	0	1					18.947	18.947	2	0.0068121	9833	DP1063-6	73.082	73.082	+		1.0859	1.1077	NaN	1	0	Median	26703000	13149000	13555000	1394	589	1331	3146	6487	6487		1	9606
ILVGHALHNDLK	1	0	Unmodified	1328.7565	0.75646926	512	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			15.215	15.215	2	0.00013455	7070	DP1063-8	152.04	91.643			NaN	NaN	NaN	0	0	Median	20208000	0	20208000	1395	512	1332	3147	6488;6489	6488		2	9606
ILVVIEPLLIDEDYYAR	0	1	Unmodified	2033.1085	0.1084944	69	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				25.029	25.029	2	8.2503E-06	19591	DP1063-7	144.47	102.44			NaN	NaN	NaN	0	0	Median	4873000	0	4873000	1396	69	1333	3148	6490;6491	6491		2	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Oxidation (M)	2170.1052	0.10521671	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		20.269	20.269	2;3	2.7257E-97	13505	DP1063-8	275.42	275.42			0.95358	0.98807	9.5365	3	0	Plateau	303220000	145710000	157510000	1397	95	1334	3149;3150;3151	6492;6493;6494;6495;6496;6497;6498;6499;6500;6501	6494	98	10	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Unmodified	2154.1103	0.11030209	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.072	21.072	2	3.0332999999999998E-22	14614	DP1063-8	184.87	155.54			1.0801	1.1244	6.8264	2	0	Median	121080000	42736000	78348000	1398	95	1334	3152;3153	6502;6503;6504;6505;6506;6507;6508	6506		7	9606
IMIMTDQDQDGSHIK	1	0	2 Oxidation (M)	1762.7866	0.78658469	129	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	yes	no	0	2	0	1	0	1					15.114	15.114	3	0.0074822	5068	DP1063-6	91.076	51.515			NaN	NaN	NaN	0	0	Median	4516600	0	4516600	1399	129	1335	3154	6509	6509	149;150	1	9606
IMLPWDPTGK	1	0	Oxidation (M)	1172.59	0.58998078	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		21.276	21.276	2	0.0019155	14924	DP1063-9	88.177	35.24			1.8345	1.8856	NaN	1	0	Median	19789000	8358400	11431000	1400	164	1336	3155	6510;6511	6510	195	2	9606
IMNTFSVVPSPK	1	0	Oxidation (M)	1334.6904	0.69042311	311;109;366	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		18.244	18.244	2	6.5623E-05	10929	DP1063-8	130.94	84.812			3.2876	3.3449	2.6292	2	0	Median	336970000	83205000	253770000	1401	109;311;366	1337	3156;3157	6512;6513;6514;6515;6516;6517;6518;6519	6515	116	8	9606
IMNTFSVVPSPK	1	0	Unmodified	1318.6955	0.69550848	311;109;366	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	4	0				1		19.252	19.252	2	0.021795	12345	DP1063-9	99.343	38.515			NaN	NaN	NaN	0	0	Median	0	0	0	1402	109;311;366	1337	3158	6520	6520		1	9606
IMSSLEDEGFSNLLFVDR	0	1	Oxidation (M)	2086.9881	0.98812127	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	1	0	1	0	1					23.375	23.375	2	0.0015302	15517	DP1063-6	122.66	82.646			NaN	NaN	NaN	0	0	Median	2853000	0	2853000	1403	426	1338	3159	6521	6521	525	1	9606
IMSSPLSK	1	0	Oxidation (M)	877.4579	0.45790397	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	1	0	5	0					1	14.181	14.181	2	0.0075369	6299	DP1063-10	82.241	45.212			9.4397	5.5999	NaN	1	0	Median	34955000	4190200	30765000	1404	255	1339	3160	6522;6523	6522	314	2	9606
INALTAASEAACLIVSVDETIKNPR	1	1	Unmodified	2655.3902	0.39016535	488	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	3	0			1			25.448	25.448	3	6.5853E-12	19951	DP1063-8	141.45	141.45			1.8415	1.8516	NaN	1	0	Median	13647000	5082800	8564600	1405	488	1340	3161	6524;6525;6526;6527;6528	6525		5	9606
INEELESQYQQSMDSK	1	0	Oxidation (M)	1943.8419	0.84185096	31	O00193	SMAP	Small acidic protein	yes	yes	0	1	0	4	0				1		16.646	16.646	2	2.2754E-13	8756	DP1063-9	171.36	135.36			NaN	NaN	NaN	0	0	Median	8682500	0	8682500	1406	31	1341	3162	6529;6530	6529	22	2	9606
INEILSNALK	1	0	Unmodified	1113.6394	0.63937381	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2	0		1				18.9	18.9	2	5.1816E-08	11606	DP1063-7	152.11	102.58			1.0397	1.0713	NaN	1	0	Median	72843000	35536000	37307000	1407	236	1342	3163	6531;6532	6531		2	9606
INFDKYHPGYFGK	2	0	Unmodified	1584.7725	0.77251325	213	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	1	5	0					1	17.521	17.521	3	0.00047942	10434	DP1063-10	117.79	117.79			6.1873	6.3057	NaN	1	0	Median	25584000	5671100	19913000	1408	213	1343	3164	6533;6534	6534		2	9606
INFYCPGSALGR	0	1	Unmodified	1353.65	0.64995528	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					19.659	19.659	2	0.026272	10829	DP1063-6	87.298	21.833			NaN	NaN	NaN	0	0	Median	6036700	0	6036700	1409	585	1344	3165	6535;6536	6536		2	9606
INGCAIQCR	0	1	Unmodified	1090.5012	0.50118255	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			14.311	14.311	2	0.00025367	5384	DP1063-7	129.4	129.4			1.1624	1.1906	23.93	2	0	Median	127360000	62874000	64484000	1410	130	1345	3166;3167	6537;6538;6539;6540;6541;6542;6543	6541		7	9606
INGWAVECR	0	1	Unmodified	1103.5182	0.51821282	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0		1				17.388	17.388	2	0.00041585	9572	DP1063-7	123.72	92.491			1.3942	1.4133	NaN	1	0	Median	103320000	36510000	66812000	1411	94	1346	3168	6544;6545;6546	6545		3	9606
INISEGNCPER	0	1	Unmodified	1287.5877	0.58774895	399;398	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	4	0				1		15.271	15.271	2	8.8399E-06	6941	DP1063-9	147.4	111.97			2.0031	2.0953	NaN	1	0	Median	24091000	8829200	15262000	1412	398;399	1347	3169	6547;6548;6549;6550	6548		4	9606
INPYMSSPCHIEMILTEK	1	0	Oxidation (M)	2178.0159	0.0159327	154	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	0	5	0					1	19.783	19.783	3	0.031052	13437	DP1063-10	64.327	39.417			NaN	NaN	NaN	0	0	Median	5270100	0	5270100	1413	154	1348	3170	6551	6551	181	1	9606
INQVFHGSCITEGNELTK	1	0	Unmodified	2045.984	0.98403894	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.397	17.397	3	0.0031677	7893	DP1063-6	99.273	64.236			NaN	NaN	NaN	0	0	Median	20081000	0	20081000	1414	318	1349	3171	6552;6553	6553		2	9606
INTQWLLTSGTTEANAWK	1	0	Unmodified	2033.0218	0.02180466	28	CON__Streptavidin			yes	yes	0	0	0	4.31	1.14		2	1	1	9	24.213	24.213	2;3	1.001E-154	16157	DP1063-10	416.67	343.96		+	NaN	NaN	NaN	0	0	Median	5562700000	5562700000	0	1415	28	1350	3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184	6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564;6565;6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579;6580;6581;6582;6583;6584;6585;6586;6587;6588;6589;6590;6591;6592;6593;6594;6595;6596;6597;6598;6599;6600;6601;6602;6603;6604;6605;6606;6607;6608;6609;6610;6611;6612	6555		59	
INVYYNEATGGK	1	0	Unmodified	1327.6408	0.64083038	311	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	3.5	0.5			1	1		16.888	16.888	2	2.4157E-22	9225	DP1063-8	198.61	151.04			3.5342	3.5958	10.625	2	0	Median	379890000	81076000	298810000	1416	311	1351	3185;3186	6613;6614;6615;6616;6617;6618	6614		6	9606
IPCDSPQSDPVDTPTSTK	1	0	Unmodified	1943.8782	0.87823647	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				15.945	15.945	2	6.8051E-28	7504	DP1063-7	203.11	178.1			NaN	NaN	NaN	0	0	Median	50851000	0	50851000	1417	211	1352	3187;3188	6619;6620;6621;6622;6623	6622		5	9606
IPDEFDNDPILVQQLR	0	1	Unmodified	1910.9738	0.97379183	415	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				1		21.834	21.834	2	1.4514E-08	15724	DP1063-9	155.86	116.64			NaN	NaN	NaN	0	0	Median	5286100	0	5286100	1418	415	1353	3189	6624;6625	6624		2	9606
IPDWFLNR	0	1	Unmodified	1059.5502	0.55016488	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	21.473	21.473	2	1.0025E-09	15524	DP1063-10	162.31	108.75			2.96	2.1349	NaN	1	0	Median	137270000	33921000	103350000	1419	273	1354	3190	6626;6627;6628;6629	6629		4	9606
IPGYDPEPVEK	1	0	Unmodified	1242.6132	0.61321864	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				16.837	16.837	2	0.0024475	8705	DP1063-7	137.05	105.74			NaN	NaN	NaN	0	0	Median	213420000	0	213420000	1420	418	1355	3191	6630;6631	6631		2	9606
IPILLIQQPGK	1	0	Unmodified	1218.77	0.76999406	484	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				20.637	20.637	2	0.0067965	13954	DP1063-7	124.08	108.44			NaN	NaN	NaN	0	0	Median	11592000	0	11592000	1421	484	1356	3192	6632;6633	6632		2	9606
IPLLSDLTHQISK	1	0	Unmodified	1463.8348	0.83477916	358	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					1	20.647	20.647	3	0.001556	14592	DP1063-10	82.202	55.053			0.71319	0.42309	NaN	1	0	Median	15874000	7819500	8054400	1422	358	1357	3193	6634	6634		1	9606
IPLSQEEITLQGHAFEAR	0	1	Unmodified	2038.0484	0.048353761	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.25	0.829		1	1	2		19.279	19.279	2;3	2.6079E-40	12444	DP1063-9	236.4	163.7			1.0328	1.0323	1.5098	3	0	Plateau	1187600000	580370000	607270000	1423	483	1358	3194;3195;3196;3197	6635;6636;6637;6638;6639;6640;6641;6642;6643;6644;6645;6646;6647;6648	6648		14	9606
IPVQAVWAGWGHASENPK	1	0	Unmodified	1945.9799	0.97988027	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.8	1.17	3	1		1		19.816	19.816	2;3	9.3654E-37	11020	DP1063-6	220.34	199.02			0.81106	0.82735	5.9027	3	0	Median	488990000	269400000	219590000	1424	355;38	1359	3198;3199;3200;3201;3202	6649;6650;6651;6652;6653;6654;6655;6656;6657;6658;6659;6660;6661;6662;6663;6664	6649		16	9606
IPWFQYPIIYDIR	0	1	Unmodified	1722.9134	0.91336383	485	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		24.883	24.883	2	5.0449E-10	19431	DP1063-9	175.49	145.49			0.86944	0.90947	NaN	1	0	Median	8926600	4471800	4454800	1425	485	1360	3203	6665;6666;6667;6668	6665		4	9606
IQDIVGILR	0	1	Unmodified	1025.6233	0.62332982	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				20.27	20.27	2	0.006609	13466	DP1063-7	120.46	51.074			NaN	NaN	NaN	0	0	Median	34314000	0	34314000	1426	212	1361	3204	6669;6670	6670		2	9606
IQDKEGIPPDQQR	1	1	Unmodified	1522.774	0.77396981	300	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	5	0					1	13.605	13.605	3	0.028807	5550	DP1063-10	52.101	27.38			1.6157	1.5945	NaN	1	0	Median	6846900	2914500	3932300	1427	300	1362	3205	6671	6671		1	9606
IQDWYDKK	2	0	Unmodified	1094.5397	0.53965977	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			15.385	15.385	2	0.0041607	7287	DP1063-8	125.81	56.382		+	NaN	NaN	NaN	0	0	Median	15091000	15091000	0	1428	19	1363	3206	6672;6673	6673		2	9606
IQEGVESLAGYADIFLR	0	1	Unmodified	1879.968	0.96797818	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	24.609	24.609	2;3	0.00036236	19129	DP1063-9	136.3	136.3			1.0856	1.1302	2.1157	2	0	Median	58335000	28504000	29831000	1429	95	1364	3207;3208;3209	6674;6675;6676;6677;6678;6679;6680;6681;6682;6683;6684	6680		11	9606
IQEMFPLLNMNK	1	0	Oxidation (M)	1492.7418	0.74180675	553	Q9UI17	DMGDH	Dimethylglycine dehydrogenase, mitochondrial	yes	yes	0	1	0	3	0			1			15.625	15.625	3	0.010639	7582	DP1063-8	79.201	19.362			NaN	NaN	NaN	0	0	Median	17507000	17507000	0	1430	553	1365	3210	6685;6686	6686	623	2	9606
IQEQESSGEEDSDLSPEER	0	1	Unmodified	2162.9087	0.90874455	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	0	4	0				1		15.834	15.834	2	9.0519E-87	7741	DP1063-9	295.37	255.5			NaN	NaN	NaN	0	0	Median	12773000	0	12773000	1431	205	1366	3211	6687;6688;6689	6689		3	9606
IQEQESSGEEDSDLSPEEREK	1	1	Unmodified	2420.0463	0.046300668	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	1	4	0				1		14.957	14.957	3	3.8684E-08	6529	DP1063-9	149.53	128.13			NaN	NaN	NaN	0	0	Median	10368000	0	10368000	1432	205	1367	3212	6690;6691;6692	6690		3	9606
IQEVADELQK	1	0	Unmodified	1171.6085	0.60846762	151	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	5	0					1	16.265	16.265	2	0.011129	8858	DP1063-10	108.57	49.325			NaN	NaN	NaN	0	0	Median	6243800	0	6243800	1433	151	1368	3213	6693;6694	6694		2	9606
IQHQDWTGGK	1	0	Unmodified	1168.5625	0.56252048	6	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3	0			1			13.782	13.782	2	0.0013591	5156	DP1063-8	161.79	111.09		+	NaN	NaN	NaN	0	0	Median	17553000	17553000	0	1434	6	1369	3214	6695;6696	6695		2	
IQLPVVSK	1	0	Unmodified	882.55385	0.55385327	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0			1			17.952	17.952	2	0.033831	10412	DP1063-8	93.374	34.393			NaN	NaN	NaN	0	0	Median	23416000	0	23416000	1435	211	1370	3215	6697;6698	6697		2	9606
IQTQPGYANTLR	0	1	Unmodified	1360.7099	0.709913	326	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		16.235	16.235	2	2.1224E-06	8264	DP1063-9	155.06	95.99			2.3823	2.477	17.895	2	0	Median	104990000	29488000	75504000	1436	326	1371	3216;3217	6699;6700;6701;6702;6703;6704;6705;6706	6706		8	9606
IQVRLGEHNIDVLEGNEQFINAAK	1	1	Unmodified	2706.4089	0.40892695	8	CON__P00761			yes	yes	0	0	1	2.92	1.32	2	3	3	2	2	20.199	20.199	2;3;4	3.9177E-62	13428	DP1063-8	154.52	125.94		+	NaN	NaN	NaN	0	0	Median	522560000	522560000	0	1437	8	1372	3218;3219;3220;3221;3222;3223;3224;3225;3226;3227;3228;3229	6707;6708;6709;6710;6711;6712;6713;6714;6715;6716;6717;6718;6719;6720;6721;6722;6723;6724;6725;6726;6727;6728;6729;6730;6731;6732	6723		26	
IRDEMVATEQER	0	2	Oxidation (M)	1491.6988	0.69875596	143	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	1	1	1	0	1					13.402	13.402	3	0.043603	2944	DP1063-6	62.528	23.349			NaN	NaN	NaN	0	0	Median	0	0	0	1438	143	1373	3230	6733	6733		1	9606
IREEYPDR	0	2	Unmodified	1076.5251	0.52507234	311;109;373;414	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	1	3.33	0.471			2	1		13.405	13.405	2;3	0.00044924	4698	DP1063-8	130.56	130.56			3.4256	3.4811	3.1227	3	0	Plateau	291620000	66330000	225290000	1439	109;311;373;414	1374	3231;3232;3233	6734;6735;6736;6737;6738;6739;6740;6741;6742;6743	6739		10	9606
IRFMLETMLALK	1	1	2 Oxidation (M)	1496.8095	0.80949238	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	2	1	2	0		1				19.702	19.702	3	0.010483	12812	DP1063-7	81.709	44.565			NaN	NaN	NaN	0	0	Median	23635000	0	23635000	1440	418	1375	3234	6744	6744	515;516	1	9606
IRLENEIQTYR	0	2	Unmodified	1433.7627	0.76267685	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1.75	0.829	2	1	1			17.145	17.145	2;3	2.8384E-05	7627	DP1063-6	187.42	109.32		+	NaN	NaN	NaN	0	0	Median	126280000	126280000	0	1441	16	1376	3235;3236;3237;3238	6745;6746;6747;6748;6749;6750;6751;6752;6753	6749		9	9606
IRQNEINNPK	1	1	Unmodified	1224.6575	0.65748349	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				12.688	12.688	3	0.00014886	3286	DP1063-7	96.342	54.653			0.62609	0.65558	NaN	1	0	Median	8874200	5206700	3667600	1442	406	1377	3239	6754;6755	6755		2	9606
ISDIQSQLEK	1	0	Unmodified	1159.6085	0.60846762	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2	0		1				16.762	16.762	2	0.0075133	8675	DP1063-7	122.28	80.852			NaN	NaN	NaN	0	0	Median	36453000	0	36453000	1443	537	1378	3240	6756;6757	6756		2	9606
ISEDVEER	0	1	Unmodified	975.4509	0.45090434	244	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	3	0			1			14.073	14.073	2	0.016572	5537	DP1063-8	104.75	74.561			NaN	NaN	NaN	0	0	Median	27081000	0	27081000	1444	244	1379	3241	6758;6759	6758		2	9606
ISEQFTAMFR	0	1	Oxidation (M)	1244.586	0.58595803	311;109;373;366	P07437;P68371;P04350;Q13509;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	4	0.816			1	1	1	18.576	18.576	2	1.5351E-07	11285	DP1063-8	143.37	123.59			2.4944	2.5846	45.897	3	0	Median	450320000	131990000	318320000	1445	109;311;366;373	1380	3242;3243;3244	6760;6761;6762;6763	6762	117	3	9606
ISEQFTAMFR	0	1	Unmodified	1228.591	0.59104341	311;109;373;366	P07437;P68371;P04350;Q13509;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.5	0.5			1	1		20.567	20.567	2	1.13E-16	13887	DP1063-8	190.26	112.98			4.2702	4.4457	15.493	2	0	Median	82313000	19482000	62832000	1446	109;311;366;373	1380	3245;3246	6764;6765;6766;6767;6768;6769;6770	6765		7	9606
ISEVLQK	1	0	Unmodified	815.47527	0.4752686	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			14.636	14.636	2	0.024915	6345	DP1063-8	76.847	16.488			0.75425	0.75965	NaN	1	0	Median	32386000	17647000	14739000	1447	344	1381	3247	6771	6771		1	9606
ISGLIYEETR	0	1	Unmodified	1179.6136	0.61355299	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					8	24.208	24.208	2	6.8695E-32	11186	DP1063-10	219.54	166.82			3.369	2.4299	NaN	1	0	Median	793970000	176580000	617400000	1448	285	1382	3248;3249;3250;3251;3252;3253;3254;3255	6772;6773;6774;6775;6776;6777;6778;6779;6780;6781;6782;6783;6784;6785;6786;6787;6788	6774		17	9606
ISGLIYEETRGVLK	1	1	Unmodified	1576.8825	0.88245763	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.175	19.175	3	0.031252	12667	DP1063-10	70.889	31.074			NaN	NaN	NaN	0	0	Median	3896000	0	3896000	1449	285	1383	3256	6789	6789		1	9606
ISGSILNELIGLVR	0	1	Unmodified	1482.877	0.87697832	441	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				25.663	25.663	2	1.3993E-15	20349	DP1063-7	188.28	188.28			2.7054	2.7983	NaN	1	0	Median	5254500	1841100	3413300	1450	441	1384	3257	6790;6791	6791		2	9606
ISISTSGGSFR	0	1	Unmodified	1110.5669	0.56693715	17	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	1	0	1					17.328	17.328	2	0.035314	7865	DP1063-6	82.645	17.421		+	NaN	NaN	NaN	0	0	Median	7891400	7891400	0	1451	17	1385	3258	6792	6792		1	9606
ISLGLPVGAVINCADNTGAK	1	0	Unmodified	1969.0303	0.030260856	287	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					2	21.732	21.732	3	0.0026189	15868	DP1063-10	94.45	50.495			NaN	NaN	NaN	0	0	Median	0	0	0	1452	287	1386	3259;3260	6793;6794	6793		2	9606
ISLIQIFR	0	1	Unmodified	988.60695	0.60695147	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					22.613	22.613	2	0.0018998	14583	DP1063-6	129.68	33.89			NaN	NaN	NaN	0	0	Median	4896700	0	4896700	1453	431	1387	3261	6795;6796	6795		2	9606
ISLLLDPGSFVESDMFVEHR	0	1	Oxidation (M)	2306.1253	0.12528345	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.75	0.829			2	1	1	22.999	22.999	2;3	4.5436E-16	16966	DP1063-8	181.71	155.99			0.9778	0.94754	7.2782	4	0	Median	455660000	233530000	222130000	1454	95	1388	3262;3263;3264;3265	6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807;6808	6802	99	12	9606
ISLLLDPGSFVESDMFVEHR	0	1	Unmodified	2290.1304	0.13036883	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			24.021	24.021	2;3	1.6219E-41	18290	DP1063-8	223.93	199.02			1.0879	1.1272	3.8788	2	0	Median	110530000	52574000	57954000	1455	95	1388	3266;3267	6809;6810;6811;6812;6813;6814	6814		6	9606
ISSLLEEQFQQGK	1	0	Unmodified	1505.7726	0.77257283	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	4.5	0.5				1	1	19.247	19.247	2	3.0308000000000003E-55	12726	DP1063-10	247.51	207.89			11.381	6.7518	NaN	1	0	Median	154420000	12891000	141530000	1456	267	1389	3268;3269	6815;6816;6817;6818;6819;6820	6818		6	9606
ISTINILLSTLK	1	0	Unmodified	1314.8123	0.8122528	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					23.735	23.735	2	0.014857	15952	DP1063-6	97.597	51.14			NaN	NaN	NaN	0	0	Median	4003600	0	4003600	1457	57	1390	3270	6821;6822	6822		2	9606
ISTLTIEEGNLDIQRPK	1	1	Unmodified	1926.0422	0.042205751	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				2		18.743	18.743	2;3	2.8257E-14	11678	DP1063-9	175.88	115.8			NaN	NaN	NaN	0	0	Median	29417000	0	29417000	1458	352	1391	3271;3272	6823;6824;6825;6826	6825		4	9606
ISVLYSFLR	0	1	Unmodified	1096.6281	0.62808085	360	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				22.435	22.435	2	0.0027155	16304	DP1063-7	147.29	99.631			NaN	NaN	NaN	0	0	Median	8425200	0	8425200	1459	360	1392	3273	6827;6828	6827		2	9606
ISVMGGEQAANVLATITK	1	0	Oxidation (M)	1817.9557	0.95569893	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.16	0.488			17	1	1	25.634	25.634	2	7.326199999999999E-40	14891	DP1063-9	229.48	161.6			1.2708	1.2799	13.817	4	0	Median	1140200000	563540000	576640000	1460	524	1393	3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284;3285;3286;3287;3288;3289;3290;3291;3292	6829;6830;6831;6832;6833;6834;6835;6836;6837;6838;6839;6840;6841;6842;6843;6844;6845;6846;6847;6848;6849;6850;6851;6852;6853;6854;6855;6856;6857	6856	593	29	9606
ISVMGGEQAANVLATITK	1	0	Unmodified	1801.9608	0.96078431	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			22.348	22.348	2	6.8041E-27	16186	DP1063-8	210.14	210.14			1.2283	1.2371	NaN	1	0	Median	251670000	111180000	140490000	1461	524	1393	3293	6858;6859;6860;6861	6859		4	9606
ISVYYNEATGGK	1	0	Unmodified	1300.6299	0.62993134	109	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		16.87	16.87	2	2.7234E-15	9197	DP1063-8	187.5	137.79			3.8149	3.8814	2.1646	2	0	Median	411780000	85990000	325790000	1462	109	1394	3294;3295	6862;6863;6864;6865	6862		4	9606
ITADGAHFELR	0	1	Unmodified	1228.62	0.62003536	446	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				17.014	17.014	3	0.051254	9072	DP1063-7	64.224	4.2931			NaN	NaN	NaN	0	0	Median	22933000	0	22933000	1463	446	1395	3296	6866	6866		1	9606
ITAQSIEELCAVNLYGPDAQVDR	0	1	Unmodified	2561.2432	0.24316676	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.154	22.154	2	0.01686	14024	DP1063-6	82.813	55.478			NaN	NaN	NaN	0	0	Median	0	0	0	1464	318	1396	3297	6867	6867		1	9606
ITDIIGKEEGIGPENLR	1	1	Unmodified	1852.9894	0.9894419	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.07	0.258	13	1				23.584	23.584	2;3	2.332E-90	9631	DP1063-6	281.68	281.68			0.87812	0.92736	17.153	7	0	Median	775590000	399060000	376530000	1465	355	1397	3298;3299;3300;3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311	6868;6869;6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880;6881;6882;6883;6884;6885;6886;6887;6888;6889;6890;6891;6892;6893	6874		26	9606
ITDQEASENHVAATGSHLCVLR	0	1	Unmodified	2407.155	0.15502045	484	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				16.479	16.479	4	0.0037587	8304	DP1063-7	83.063	42.714			NaN	NaN	NaN	0	0	Median	27751000	0	27751000	1466	484	1398	3312	6894;6895	6894		2	9606
ITFLIAQEK	1	0	Unmodified	1061.6121	0.61209643	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.582	19.582	2	0.022874	10714	DP1063-6	93.178	6.7056			NaN	NaN	NaN	0	0	Median	4707300	4707300	0	1467	38	1399	3313	6896	6896		1	9606
ITGEAFVQFASQELAEK	1	0	Unmodified	1866.9363	0.9363437	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3.5	0.5			1	1		23.156	23.156	2	4.5815E-61	17339	DP1063-9	243.3	219.07			4.1442	4.2595	NaN	1	0	Median	68813000	10188000	58625000	1468	239	1400	3314;3315	6897;6898;6899;6900;6901	6898		5	9606
ITISSLQDLTLYNPER	0	1	Unmodified	1861.9785	0.97854286	546	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			22.559	22.559	2	0.00015103	16453	DP1063-8	124.48	78.824			NaN	NaN	NaN	0	0	Median	0	0	0	1469	546	1401	3316	6902	6902		1	9606
ITITNDQNR	0	1	Unmodified	1073.5465	0.54653606	127	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	2.5	0.5		1	1			14.295	14.295	2	0.00019687	5334	DP1063-7	210.26	143.46			NaN	NaN	NaN	0	0	Median	27819000	0	27819000	1470	127	1402	3317;3318	6903;6904;6905	6903		3	9606
ITLIIGGSYGAGNYGMCGR	0	1	Oxidation (M)	1974.9292	0.9291666	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		20.35	20.35	2	7.5587E-05	13865	DP1063-9	132.79	119.55			0.96144	1.001	15.505	2	0	Median	297860000	137220000	160640000	1471	524	1403	3319;3320	6906;6907;6908;6909;6910;6911;6912;6913;6914	6914	594	9	9606
ITLIIGGSYGAGNYGMCGR	0	1	Unmodified	1958.9343	0.93425198	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.101	21.101	2	1.1463E-16	14594	DP1063-8	183.06	142.34			NaN	NaN	NaN	0	0	Median	46535000	46535000	0	1472	524	1403	3321	6915;6916	6915		2	9606
ITPSYVAFTPEGER	0	1	Unmodified	1565.7726	0.77257283	127	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	2	0		1				19.191	19.191	2	0.010075	12022	DP1063-7	69.864	28.747			3.1245	3.2345	NaN	1	0	Median	26727000	8442100	18285000	1473	127	1404	3322	6917;6918	6917		2	9606
ITSEAEDLVANFFPK	1	0	Unmodified	1679.8407	0.8406524	256	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		24.09	24.09	2	0.001137	18435	DP1063-9	127.83	67.923			NaN	NaN	NaN	0	0	Median	3814400	0	3814400	1474	256	1405	3323	6919;6920;6921	6920		3	9606
ITSENPDEGFKPSSGTVQELNFR	1	1	Unmodified	2551.2191	0.2190605	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1.13	0.427	27	2	1			25.614	25.614	2;3;4	1.5032000000000002E-270	9663	DP1063-6	380.2	380.2			0.82097	0.86331	22.917	16	0	Median	2418800000	1311000000	1107800000	1475	355;38	1406	3324;3325;3326;3327;3328;3329;3330;3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353	6922;6923;6924;6925;6926;6927;6928;6929;6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958;6959;6960;6961;6962;6963;6964;6965;6966;6967;6968;6969;6970;6971;6972;6973;6974;6975;6976;6977;6978;6979;6980;6981	6929		60	9606
ITVTSEVPFSK	1	0	Unmodified	1206.6496	0.64960415	189	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	5	0					1	18.475	18.475	2	3.6308E-05	11706	DP1063-10	125.68	87.389			3.823	2.2679	NaN	1	0	Median	19102000	4219600	14882000	1476	189	1407	3354	6982;6983	6982		2	9606
IVAERPGTNSTGPAPMAPPR	0	2	Oxidation (M)	2034.0317	0.031657839	361	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	1	2	0		1				14.824	14.824	3	6.924E-06	6087	DP1063-7	100.39	75.725			1.7568	1.7719	NaN	1	0	Median	15616000	7289700	8325900	1477	361	1408	3355	6984	6984	461	1	9606
IVALNAHTFLR	0	1	Unmodified	1253.7244	0.72444085	160;3	P22087;A6NHQ2	FBL;FBLL1	rRNA 2'-O-methyltransferase fibrillarin;rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	no	no	0	0	0	4	0				2		18.555	18.555	2;3	9.7502E-06	11395	DP1063-9	146.69	111.26			6.753	7.0639	5.2979	2	0	Median	144620000	20114000	124510000	1478	160;3	1409	3356;3357	6985;6986;6987;6988	6985		4	9606
IVALSSSLSNAK	1	0	Unmodified	1188.6714	0.67140222	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.272	17.272	2	0.0043196	7736	DP1063-6	121.83	74.763			NaN	NaN	NaN	0	0	Median	14372000	0	14372000	1479	71	1410	3358	6989;6990	6990		2	9606
IVATKPLYVALAQR	1	1	Unmodified	1541.9293	0.92934824	131	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	2.5	0.5		1	1			18.396	18.396	3	0.00068738	11052	DP1063-8	117.92	117.92			2.9818	2.9982	NaN	1	0	Median	43941000	6070700	37870000	1480	131	1411	3359;3360	6991;6992;6993	6992		3	9606
IVDDDVSWTAISTTK	1	0	Unmodified	1649.8148	0.81483158	494	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	5	0					1	19.927	19.927	2	0.0018209	13668	DP1063-10	122.42	88.462			NaN	NaN	NaN	0	0	Median	4419200	0	4419200	1481	494	1412	3361	6994	6994		1	9606
IVEPYIAWGYPNLK	1	0	Unmodified	1661.8817	0.88172935	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		22.247	22.247	2	5.4586E-05	16281	DP1063-9	148.56	42.157			NaN	NaN	NaN	0	0	Median	137350000	0	137350000	1482	152	1413	3362	6995;6996	6996		2	9606
IVGDLAQFMVQNGLSR	0	1	Oxidation (M)	1762.9036	0.90360378	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.67	0.943		2		1		20.591	20.591	2;3	2.1659E-24	13906	DP1063-7	207.34	179.14			0.88363	0.89481	12.432	2	0	Median	374050000	200340000	173710000	1483	130	1414	3363;3364;3365	6997;6998;6999;7000;7001;7002;7003;7004;7005;7006	7000	159	10	9606
IVGDLAQFMVQNGLSR	0	1	Unmodified	1746.9087	0.90868916	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		22.815	22.815	2;3	1.7610000000000001E-103	16781	DP1063-7	291.22	291.22			1.0119	1.0314	14.124	4	0	Median	210000000	100670000	109320000	1484	130	1414	3366;3367;3368;3369	7007;7008;7009;7010;7011;7012;7013;7014;7015;7016;7017	7010		11	9606
IVLLDSSLEYK	1	0	Unmodified	1278.7071	0.70711903	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			20.447	20.447	2	0.0002575	13753	DP1063-8	99.013	72.499			2.1415	2.1568	NaN	1	0	Median	22065000	7795000	14270000	1485	225	1415	3370	7018;7019;7020	7018		3	9606
IVLQIDNAR	0	1	Unmodified	1040.5978	0.59784335	100	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	4	0				1		17.639	17.639	2	0.00078482	10114	DP1063-9	95.909	52.995			1.2828	1.3419	NaN	1	0	Median	40039000	17260000	22779000	1486	100	1416	3371	7021;7022;7023;7024	7022		4	9606
IVQAEGEAEAAK	1	0	Unmodified	1214.6143	0.61428128	485	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		14.016	14.016	2	2.3645E-15	5275	DP1063-9	188.91	151.44			0.99439	1.0221	NaN	1	0	Median	22914000	12237000	10676000	1487	485	1417	3372	7025;7026;7027;7028	7028		4	9606
IVQMTEAEVR	0	1	Oxidation (M)	1190.5965	0.59652272	265	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	1	0	4	0				1		14.27	14.27	2	0.021057	5569	DP1063-9	102.61	58.839			NaN	NaN	NaN	0	0	Median	23833000	0	23833000	1488	265	1418	3373	7029;7030	7029	323	2	9606
IVSGCPLPEACELYYVNR	0	1	Unmodified	2139.0129	0.012896232	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				20.755	20.755	2	7.2611E-23	14083	DP1063-7	188.48	152.72			NaN	NaN	NaN	0	0	Median	47912000	0	47912000	1489	514	1419	3374	7031;7032	7032		2	9606
IVYLYTK	1	0	Unmodified	898.51641	0.51640513	223	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	17.381	17.381	2	0.0014038	10178	DP1063-10	118.69	64.161			13.027	7.7279	NaN	1	0	Median	126380000	8406300	117980000	1490	223	1420	3375	7033;7034	7033		2	9606
IWHHTFYNELR	0	1	Unmodified	1514.7419	0.74188183	252;308	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P68133;P68032	ACTG1;ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTA1;ACTC1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	no	no	0	0	0	4	0				2		16.816	16.816	2;3	8.3744E-06	9025	DP1063-9	140.78	140.78			1.0754	1.1249	12.908	2	0	Median	77006000	40711000	36295000	1491	252;308	1421	3376;3377	7035;7036;7037;7038;7039	7037		5	9606
IWSHVHSHLR	0	1	Unmodified	1270.6683	0.66832295	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					13.431	13.431	3	0.0056016	2961	DP1063-6	105.2	61.913			NaN	NaN	NaN	0	0	Median	4638500	0	4638500	1492	73	1422	3378	7040;7041	7040		2	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Oxidation (M)	2640.3006	0.30062206	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.67	0.943		2		1		20.445	20.445	2;3	1.3782E-10	13711	DP1063-7	129.43	129.43			0.72014	0.71634	2.2248	3	0	Plateau	412630000	236810000	175820000	1493	483	1423	3379;3380;3381	7042;7043;7044;7045;7046;7047;7048;7049;7050;7051;7052;7053;7054;7055	7051	554	14	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Unmodified	2624.3057	0.30570743	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				21.571	21.571	3	3.6216E-10	15100	DP1063-7	130.09	130.09			0.68617	0.69839	NaN	1	0	Median	79496000	46629000	32867000	1494	483	1423	3382	7056;7057;7058;7059;7060	7056		5	9606
IYGFYDECK	1	0	Unmodified	1193.5063	0.50631073	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		18.716	18.716	2	0.0030904	11462	DP1063-8	134.81	114.81			NaN	NaN	NaN	0	0	Median	344200000	0	344200000	1495	194;264;265	1424	3383;3384	7061;7062;7063;7064	7062		4	9606
IYGFYDECKR	1	1	Unmodified	1349.6074	0.60742176	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			1	1		17.132	17.132	3	0.0024478	9566	DP1063-8	126.31	100.2			NaN	NaN	NaN	0	0	Median	186930000	0	186930000	1496	194;264;265	1425	3385;3386	7065;7066;7067;7068	7066		4	9606
IYGLGSLALYEK	1	0	Unmodified	1325.7231	0.72310344	192	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		21.458	21.458	2	0.00011486	15181	DP1063-9	125.74	63.154			1.5841	1.6282	NaN	1	0	Median	20713000	7735700	12977000	1497	192	1426	3387	7069;7070;7071;7072	7069		4	9606
IYNDDKNTYIR	1	1	Unmodified	1413.6888	0.6888432	69	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				15.14	15.14	3	0.0033607	6484	DP1063-7	110.39	74.723			NaN	NaN	NaN	0	0	Median	14004000	0	14004000	1498	69	1427	3388	7073;7074	7074		2	9606
IYPTFLHLHGK	1	0	Unmodified	1324.7292	0.72919187	346	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	2	0		1				17.541	17.541	3	0.03513	9751	DP1063-7	70.977	49.346			NaN	NaN	NaN	0	0	Median	21041000	0	21041000	1499	346	1428	3389	7075	7075		1	9606
IYVSANSGAR	0	1	Unmodified	1036.5302	0.53015772	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			14.352	14.352	2	3.1987E-12	5402	DP1063-7	180.03	144.67			0.98998	0.981	3.3681	3	0	Plateau	1111000000	544880000	566070000	1500	355	1429	3390;3391;3392	7076;7077;7078;7079;7080;7081	7078		6	9606
KADTEEEFLAFR	1	1	Unmodified	1454.7042	0.70415892	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				19.044	19.044	2	0.027644	11810	DP1063-7	123.96	86.892			NaN	NaN	NaN	0	0	Median	0	0	0	1501	211	1430	3393	7082	7082		1	9606
KADTEEEFLAFRK	2	1	Unmodified	1582.7991	0.79912193	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				17.301	17.301	3	0.0037627	9415	DP1063-7	126.1	79.035			NaN	NaN	NaN	0	0	Median	58319000	0	58319000	1502	211	1431	3394	7083	7083		1	9606
KADVEEEFLALRK	2	1	Unmodified	1546.8355	0.83550744	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	2	2	0		1				18.234	18.234	3	0.021746	10675	DP1063-7	95.428	63.153			NaN	NaN	NaN	0	0	Median	49993000	0	49993000	1503	211	1432	3395	7084	7084		1	9606
KADVEGELLACR	1	1	Unmodified	1359.6816	0.68164933	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					17.013	17.013	2	0.0057326	7399	DP1063-6	128.88	94.494			NaN	NaN	NaN	0	0	Median	20859000	0	20859000	1504	211	1433	3396	7085;7086	7086		2	9606
KAEAGAGSATEFQFR	1	1	Unmodified	1568.7583	0.75831975	219	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	1	5	0					3	16.521	16.521	2;3	0.0027795	9137	DP1063-10	99.238	61			NaN	NaN	NaN	0	0	Median	13320000	0	13320000	1505	219	1434	3397;3398;3399	7087;7088;7089;7090	7087		4	9606
KAEEATEAQEVVEATPEGACTEPR	1	1	Unmodified	2601.1864	0.18643974	72	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	1	4	0				1		17.094	17.094	3	6.870899999999999E-22	9396	DP1063-9	171.75	140.69			NaN	NaN	NaN	0	0	Median	37549000	0	37549000	1506	72	1435	3400	7091;7092;7093	7091		3	9606
KAEVNTIPGFDGVVK	2	0	Unmodified	1572.8512	0.8511575	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2	0		1				18.217	18.217	2	0.0012854	10658	DP1063-7	129.76	129.76			0.95449	0.98501	NaN	1	0	Median	32525000	15446000	17079000	1507	94	1436	3401	7094	7094		1	9606
KAEVNTIPGFDGVVKDAEEAVR	2	1	Unmodified	2343.207	0.20703925	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	2.5	0.5		1	1			20.703	20.703	4	4.279E-07	14047	DP1063-7	118.44	103.2			0.98585	0.99669	38.28	2	0	Median	52278000	28834000	23444000	1508	94	1437	3402;3403	7095;7096;7097;7098;7099;7100	7096		5	9606
KAGNFYVPAEPK	2	0	Unmodified	1319.6874	0.68738664	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				2		15.969	15.969	2;3	0.036309	7931	DP1063-9	67.252	36.254			NaN	NaN	NaN	0	0	Median	57147000	0	57147000	1509	152	1438	3404;3405	7101;7102;7103;7104	7104		4	9606
KAGPGSLELCGLPSQK	2	0	Unmodified	1640.8556	0.85559095	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				17.291	17.291	3	0.0048153	9452	DP1063-7	92.8	47.543			NaN	NaN	NaN	0	0	Median	15175000	0	15175000	1510	381	1439	3406	7105	7105		1	9606
KAGTATSPAGSSPAVAGGTQR	1	1	Unmodified	1870.9497	0.94970235	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	1	0	1					13.403	13.403	3	0.01959	2954	DP1063-6	71.428	45.606			NaN	NaN	NaN	0	0	Median	2944600	0	2944600	1511	365	1440	3407	7106	7106		1	9606
KALAAAGYDVEK	2	0	Unmodified	1234.6558	0.65575216	142;125	P10412;P16402;Q02539;P22492;P16403	HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.2	no	no	0	0	1	4	0				2		14.808	14.808	2;3	0.00010075	6300	DP1063-9	126.12	83.928			8.1201	8.5899	10.647	2	0	Median	83404000	11925000	71479000	1512	125;142	1441	3408;3409	7107;7108;7109;7110;7111	7109		5	9606
KALAAAGYDVEKNNSR	2	1	Unmodified	1705.8747	0.87474649	142;125	P10412;P16402;Q02539;P22492;P16403	HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.2	no	no	0	0	2	4	0				1		14.02	14.02	3	0.0070221	5282	DP1063-9	107.73	82.087			NaN	NaN	NaN	0	0	Median	9518300	0	9518300	1513	125;142	1442	3410	7112;7113	7112		2	9606
KALVDILSEVSK	2	0	Unmodified	1300.7602	0.76021723	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				20.184	20.184	2	0.0036192	13344	DP1063-7	134.18	93.459			NaN	NaN	NaN	0	0	Median	8326900	0	8326900	1514	493	1443	3411	7114;7115	7114		2	9606
KASGPPVSELITK	2	0	Unmodified	1325.7555	0.7554662	142;125	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	1	4	0				1		16.329	16.329	3	0.00025926	8267	DP1063-9	100.11	80.916			7.2229	7.6408	NaN	1	0	Median	229930000	30238000	199690000	1515	125;142	1444	3412	7116;7117	7117		2	9606
KAVDALLTHCK	2	0	Unmodified	1254.6754	0.67544174	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			14.541	14.541	3	4.6447E-06	6179	DP1063-8	134.38	134.38			15.707	15.29	NaN	1	0	Median	67608000	5125700	62483000	1516	75	1445	3413	7118;7119	7119		2	9606
KAYGGAYDVMSSK	2	0	Oxidation (M)	1391.6391	0.63911582	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3.33	0.471			2	1		13.957	13.957	2;3	0.00021286	5380	DP1063-8	101.45	101.45			1.0818	1.0531	11.613	3	0	Median	216700000	106260000	110440000	1517	95	1446	3414;3415;3416	7120;7121;7122;7123;7124;7125;7126;7127;7128;7129	7121	94	10	9606
KAYVEANQMLGDLIK	2	0	Oxidation (M)	1707.8866	0.88655673	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		2				18.193	18.193	2;3	2.6432E-05	10575	DP1063-7	153.81	111.01			0.95678	0.98736	7.0723	2	0	Median	131850000	66138000	65710000	1518	130	1447	3417;3418	7130;7131;7132;7133;7134;7135	7134	151	6	9606
KAYVEANQMLGDLIK	2	0	Unmodified	1691.8916	0.89164211	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				20.087	20.087	3	0.0016684	13253	DP1063-7	70.47	39.255			0.83601	0.86274	NaN	1	0	Median	19095000	9448600	9646500	1519	130	1447	3419	7136	7136		1	9606
KDCEVVMMIGLPGAGK	2	0	2 Oxidation (M)	1735.8307	0.83069811	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	2	1	2	0		1				17.516	17.516	2	0.011746	9718	DP1063-7	77.204	40.52			NaN	NaN	NaN	0	0	Median	0	0	0	1520	330	1448	3420	7137	7137	394;395	1	9606
KDDALSLKELITEAQTK	3	0	Unmodified	1902.031	0.030972362	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	2	2	0		1				20.069	20.069	3	0.0086977	13234	DP1063-7	103.88	64.35			NaN	NaN	NaN	0	0	Median	14126000	0	14126000	1521	418	1449	3421	7138	7138		1	9606
KDDEVQVVR	1	1	Unmodified	1086.5669	0.56693715	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	1	5	0					1	13.569	13.569	2	0.0047153	5559	DP1063-10	146.79	64.035			NaN	NaN	NaN	0	0	Median	23355000	0	23355000	1522	255	1450	3422	7139;7140	7140		2	9606
KDDPTLLSSGR	1	1	Unmodified	1187.6146	0.61461563	159	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	5	0					1	14.916	14.916	2	2.8555E-05	7224	DP1063-10	128.03	62.788			0.60477	0.59684	NaN	1	0	Median	15580000	10600000	4979500	1523	159	1451	3423	7141;7142;7143;7144	7142		4	9606
KDGSSSVPLSFAR	1	1	Unmodified	1349.6939	0.69392858	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0		2				17.301	17.301	2;3	0.02647	9474	DP1063-7	94.692	56.389			NaN	NaN	NaN	0	0	Median	28561000	0	28561000	1524	418	1452	3424;3425	7145;7146;7147	7145		3	9606
KDMNDTLTSALMGACVTASAMPSR	1	1	2 Oxidation (M)	2559.1437	0.14372876	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	2	1	2	0		3				19.694	19.694	2;3	5.7719E-08	12593	DP1063-7	119.68	85.165			NaN	NaN	NaN	0	0	Median	39208000	0	39208000	1525	418	1453	3426;3427;3428	7148;7149;7150;7151	7151	511;512;513	4	9606
KEAQELSQNSAIK	2	0	Unmodified	1444.7522	0.75217174	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		2				13.752	13.752	2;3	0.040894	4682	DP1063-7	92.856	44.06			NaN	NaN	NaN	0	0	Median	8404200	0	8404200	1526	531	1454	3429;3430	7152;7153	7153		2	9606
KEPFFHGHDNYDQLVR	1	1	Unmodified	2000.9493	0.94930842	312	P68400	CSNK2A1	Casein kinase II subunit alpha	yes	yes	0	0	1	4	0				1		16.671	16.671	4	0.020919	8817	DP1063-9	65.374	32.068			NaN	NaN	NaN	0	0	Median	14608000	0	14608000	1527	312	1455	3431	7154	7154		1	9606
KEQELTQAIK	2	0	Unmodified	1186.6558	0.65575216	516	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2	0		1				14.268	14.268	2	0.015153	5305	DP1063-7	117.52	63.769			NaN	NaN	NaN	0	0	Median	10689000	0	10689000	1528	516	1456	3432	7155;7156	7156		2	9606
KESYSIYVYK	2	0	Unmodified	1278.6496	0.64960415	106	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	5	0					1	16.732	16.732	2	1.2693E-05	9354	DP1063-10	135.43	135.43			3.0023	3.0597	NaN	1	0	Median	58143000	15646000	42498000	1529	106	1457	3433	7157;7158;7159;7160	7158		4	9606
KESYSVYVYK	2	0	Unmodified	1264.634	0.63395408	61	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	1	5	0					1	16.075	16.075	2	4.4644E-09	8596	DP1063-10	162.64	162.64			3.1797	3.2405	NaN	1	0	Median	122370000	35487000	86882000	1530	61	1458	3434	7161;7162	7161		2	9606
KEVKEELSAVER	2	1	Unmodified	1415.762	0.76200815	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				14.387	14.387	3	0.028111	5506	DP1063-7	94.402	56.165			NaN	NaN	NaN	0	0	Median	20204000	0	20204000	1531	211	1459	3435	7163	7163		1	9606
KFDAIYK	2	0	Unmodified	883.48035	0.48035398	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0		1				15.169	15.169	2	0.017116	6507	DP1063-7	81.191	35.175			137.62	142.02	NaN	1	0	Median	516010000	3392600	512620000	1532	418	1460	3436	7164;7165	7165		2	9606
KFEEEGNPYYSSAR	1	1	Unmodified	1675.7478	0.74781464	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	4.33	0.471				2	1	15.756	15.756	2;3	2.5469E-32	7606	DP1063-9	255.24	227.91			1.1588	1.0959	15.6	2	0	Median	100290000	46458000	53831000	1533	524	1461	3437;3438;3439	7166;7167;7168;7169;7170;7171	7169		6	9606
KFGDPVVQSDMK	2	0	Oxidation (M)	1365.6599	0.65985126	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			2			14.865	14.865	2;3	0.00032806	6652	DP1063-8	85.522	59.51			4.1353	4.0255	32.419	2	0	Median	104320000	20916000	83400000	1534	124	1462	3440;3441	7172;7173	7172	135	2	9606
KFGYVDFESAEDLEK	2	0	Unmodified	1775.8254	0.82539626	155	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.5		2	2			19.773	19.773	2;3	4.2150000000000004E-24	12857	DP1063-7	209.22	209.22			11.634	12.006	NaN	1	0	Median	188090000	9447000	178640000	1535	155	1463	3442;3443;3444;3445	7174;7175;7176;7177;7178;7179;7180;7181	7175		8	9606
KFSKEEPVSSGPEEAVGK	3	0	Unmodified	1903.9527	0.95272204	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	2	3	0			1			14.459	14.459	3	0.0021365	6067	DP1063-8	119.76	87.04			NaN	NaN	NaN	0	0	Median	7562100	0	7562100	1536	35	1464	3446	7182;7183	7182		2	9606
KGAIDDLQQGELEAFIQNLNLAK	2	0	Unmodified	2527.3282	0.32821702	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				24.159	24.159	3	0.047823	18578	DP1063-7	56.461	33.877			NaN	NaN	NaN	0	0	Median	6093400	0	6093400	1537	338	1465	3447	7184	7184		1	9606
KGDIVDIK	2	0	Unmodified	886.51238	0.51238239	215	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	1	5	0					1	14.521	14.521	2	0.0015368	6789	DP1063-10	96.034	31.826			8.2927	8.4513	NaN	1	0	Median	27580000	2914900	24665000	1538	215	1466	3448	7185;7186	7186		2	9606
KGEKDIPGLTDTTVPR	2	1	Unmodified	1725.9261	0.92611336	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	2	4	0				1		16.229	16.229	3	0.0076058	8292	DP1063-9	106.6	71.248			NaN	NaN	NaN	0	0	Median	16273000	0	16273000	1539	284	1467	3449	7187;7188	7188		2	9606
KGHAVGDIPGVR	1	1	Unmodified	1204.6677	0.66765425	272	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	1	5	0					1	14.143	14.143	3	0.0010997	6267	DP1063-10	76.326	53.987			5.0521	4.9858	NaN	1	0	Median	44878000	7436200	37442000	1540	272	1468	3450	7189;7190;7191	7190		3	9606
KGLTPSQIGVILR	1	1	Unmodified	1380.8453	0.84528426	274	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	18.724	18.724	3	0.00038399	12029	DP1063-10	89.663	60.364			6.9289	6.838	NaN	1	0	Median	30694000	4554300	26140000	1541	274	1469	3451	7192;7193	7192		2	9606
KGNMDEAHIDQVR	1	1	Oxidation (M)	1527.71	0.70998935	411	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	1	3	0			1			13.016	13.016	3	0.0093502	4250	DP1063-8	96.464	68.103			NaN	NaN	NaN	0	0	Median	6031500	0	6031500	1542	411	1470	3452	7194	7194	506	1	9606
KGQVIQF	1	0	Unmodified	818.46504	0.46503826	322	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	1	5	0					1	17.591	17.591	2	0.0077776	10525	DP1063-10	91.093	75.461			6.0269	3.5753	NaN	1	0	Median	27405000	3437000	23968000	1543	322	1471	3453	7195;7196	7195		2	9606
KGTDIMYTGTLDCWR	1	1	Oxidation (M)	1831.8233	0.82330455	93	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	1	4	0				2		18.496	18.496	2;3	0.00050201	11345	DP1063-9	88.311	88.311			1.8051	1.7071	14.323	2	0	Median	29858000	12930000	16928000	1544	93	1472	3454;3455	7197;7198;7199	7197	81	3	9606
KGTHFVQLCCQR	1	1	Unmodified	1532.734	0.73403603	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		14.441	14.441	2;3	7.097699999999999E-32	6036	DP1063-8	222.18	222.18			1.1537	1.1601	6.031	3	0	Median	409540000	188080000	221460000	1545	524	1473	3456;3457;3458	7200;7201;7202;7203;7204;7205;7206;7207;7208;7209;7210	7202		11	9606
KHHLQPENPGPGGAAPSLEQNR	1	1	Unmodified	2333.1625	0.16248909	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.33	0.471		2	1			14.395	14.395	3;4	8.3955E-06	5459	DP1063-7	129.2	99.052			NaN	NaN	NaN	0	0	Median	69052000	0	69052000	1546	381	1474	3459;3460;3461	7211;7212;7213;7214;7215	7212		5	9606
KHIMGQNVADYMR	1	1	2 Oxidation (M)	1593.7392	0.73918099	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	1	4	0				1		13.422	13.422	3	0.0093816	4489	DP1063-9	53.754	37.616			11.947	11.299	NaN	1	0	Median	20424000	1713100	18711000	1547	214	1475	3462	7216	7216	248;249	1	9606
KIAFAITAIK	2	0	Unmodified	1074.6801	0.68011642	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					1	18.26	18.26	2	0.0020011	11420	DP1063-10	89.886	29.408			3.2152	3.2767	NaN	1	0	Median	31093000	6927500	24165000	1548	273	1476	3463	7217;7218;7219;7220	7219		4	9606
KIAPYVAHNFSK	2	0	Unmodified	1373.7456	0.74557022	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				14.778	14.778	2;3	0.00043066	5971	DP1063-7	84.718	84.718			0.87567	0.90366	0.98663	2	0	Median	167660000	89470000	78186000	1549	130	1477	3464;3465	7221;7222;7223;7224;7225;7226;7227;7228	7222		8	9606
KIEEIKDFLLTAR	2	1	Unmodified	1574.9032	0.90319307	304	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	2	5	0					2	19.538	19.538	2;3	2.988E-06	13167	DP1063-10	159.58	159.58			2.3748	2.3187	NaN	1	0	Median	47232000	11342000	35890000	1550	304	1478	3466;3467	7229;7230;7231;7232;7233;7234	7232		6	9606
KIEQVDKEDEITEK	3	0	Unmodified	1702.8625	0.86251005	571	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	2	3	0			2			14.082	14.082	2;3	2.3978E-06	5549	DP1063-8	161.87	127.37			5.9482	6.2127	NaN	1	0	Median	41043000	5240000	35803000	1551	571	1479	3468;3469	7235;7236	7236		2	9606
KIHNANPELTDGQIQAMLR	1	1	Oxidation (M)	2164.1059	0.10588542	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					16.528	16.528	3;4	3.9011E-06	6776	DP1063-6	145.82	145.82			0.77145	0.81471	4.1964	2	0	Median	107050000	59498000	47557000	1552	355	1480	3470;3471	7237;7238;7239;7240;7241;7242;7243	7237	425	7	9606
KIHNANPELTDGQIQAMLR	1	1	Unmodified	2148.111	0.11097079	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					18.223	18.223	3;4	0.00096732	8976	DP1063-6	72.21	57.858			0.80556	0.85073	1.7024	2	0	Median	27768000	13463000	14305000	1553	355	1480	3472;3473	7244;7245	7244		2	9606
KIPGYDPEPVEK	2	0	Unmodified	1370.7082	0.70818166	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2.67	1.11	1	2	1	2		15.708	15.708	2;3	0.0001221	7213	DP1063-7	117.03	97.93			53.379	55.086	NaN	1	0	Median	551880000	4583700	547300000	1554	418	1481	3474;3475;3476;3477;3478;3479	7246;7247;7248;7249;7250;7251;7252;7253;7254;7255;7256	7249		11	9606
KIVDQIRPDR	1	2	Unmodified	1238.7095	0.70951906	148;469	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	2	3	0			1			14.119	14.119	3	0.024464	5583	DP1063-8	66.435	40.998			9.69	10.581	NaN	1	0	Median	79359000	7877200	71481000	1555	469;148	1482	3480	7257	7257		1	9606
KKDGSSSVPLSFAR	2	1	Unmodified	1477.7889	0.7888916	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	2	2	0		1				15.583	15.583	2	3.9959E-09	7088	DP1063-7	176.32	136.45			NaN	NaN	NaN	0	0	Median	10691000	0	10691000	1556	418	1483	3481	7258	7258		1	9606
KKEENSTEEQALEDQNAK	3	0	Unmodified	2089.9764	0.97637061	530	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	2	3	0			1			13.511	13.511	3	0.00022913	4852	DP1063-8	137.52	114.72			NaN	NaN	NaN	0	0	Median	8926100	0	8926100	1557	530	1484	3482	7259	7259		1	9606
KKEEPSQNDISPK	3	0	Unmodified	1498.7627	0.76273643	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	2	2	0		1				12.596	12.596	3	0.05246	3183	DP1063-7	80.96	47.764			NaN	NaN	NaN	0	0	Median	14973000	0	14973000	1558	531	1485	3483	7260	7260		1	9606
KKPNPVEEEPSR	2	1	Unmodified	1408.731	0.73104237	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1	0	1					12.574	12.574	3	0.014261	2001	DP1063-6	105.95	57.383			NaN	NaN	NaN	0	0	Median	7004800	0	7004800	1559	211	1486	3484	7261;7262	7261		2	9606
KLAAAEGLEPK	2	0	Unmodified	1125.6394	0.63937381	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	1	4	0				1		14.818	14.818	2	0.029181	6322	DP1063-9	99.283	45.125			NaN	NaN	NaN	0	0	Median	41377000	0	41377000	1560	205	1487	3485	7263	7263		1	9606
KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	1	1	Oxidation (M)	3533.7072	0.70715916	310;434;492	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	1	3	0			2			23.256	23.256	3;4	1.6507E-14	17316	DP1063-8	104.24	104.24			3.4509	3.4698	NaN	1	0	Median	114560000	8256300	106310000	1561	310;434;492	1488	3486;3487	7264;7265;7266;7267;7268	7265	368	5	9606
KLASASLLDTDKR	2	1	Unmodified	1416.7936	0.79364262	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	2	2	0		1				15.142	15.142	3	0.023006	6498	DP1063-7	94.728	62.739			NaN	NaN	NaN	0	0	Median	21713000	0	21713000	1562	543	1489	3488	7269	7269		1	9606
KLAVNMVPFPR	1	1	Unmodified	1270.722	0.72199801	311;109;373;366;414	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q13509;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	1	3	0			1			18.758	18.758	3	0.005115	11542	DP1063-8	91.658	61.046			NaN	NaN	NaN	0	0	Median	0	0	0	1563	109;311;366;373;414	1490	3489	7270	7270		1	9606
KLDAEDVIGSR	1	1	Unmodified	1201.6303	0.63026569	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	2					16.602	16.602	2;3	0.0016557	6922	DP1063-6	142.83	100.72			NaN	NaN	NaN	0	0	Median	20725000	0	20725000	1564	211	1491	3490;3491	7271;7272;7273;7274	7273		4	9606
KLDELYGTWR	1	1	Unmodified	1279.6561	0.65608651	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				1		18.301	18.301	2	0.0025914	11043	DP1063-9	143.03	143.03			NaN	NaN	NaN	0	0	Median	84881000	0	84881000	1565	193	1492	3492	7275;7276	7275		2	9606
KLDPGSEETQTLVR	1	1	Unmodified	1571.8155	0.81550028	175	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	3	0			1			15.978	15.978	2	0.0035949	8067	DP1063-8	80.871	54.212			0.95713	0.96238	NaN	1	0	Median	24006000	11927000	12079000	1566	175	1493	3493	7277	7277		1	9606
KLDVTIEPSEEPLFPADELYGIVGANLK	2	0	Unmodified	3056.5958	0.59578425	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			24.328	24.328	3	1.1872E-10	18625	DP1063-8	106.44	106.44			0.77469	0.75413	NaN	1	0	Median	99669000	55558000	44112000	1567	524	1494	3494	7278;7279;7280;7281;7282;7283;7284	7282		7	9606
KLDVTIEPSEEPLFPADELYGIVGANLKR	2	1	Unmodified	3212.6969	0.69689528	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	2	3	0			2			23.25	23.25	3;4	1.0165E-10	17294	DP1063-8	106.44	95.444			0.72038	0.74445	10.568	2	0	Median	80700000	42183000	38516000	1568	524	1495	3495;3496	7285;7286;7287;7288;7289;7290	7285		6	9606
KLETEETVPETDVETK	2	0	Unmodified	1846.9048	0.9047688	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				15.74	15.74	2	2.3662E-13	7335	DP1063-7	173.25	126.52			NaN	NaN	NaN	0	0	Median	6547900	0	6547900	1569	338	1496	3497	7291;7292;7293	7292		3	9606
KLEYGGQTWHEHCFLCSGCEQPLGSR	1	1	Unmodified	3135.3749	0.37494276	370	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	1	4	0				1		17.895	17.895	4	0.00014383	10500	DP1063-9	86.617	68.37			NaN	NaN	NaN	0	0	Median	10149000	10149000	0	1570	370	1497	3498	7294;7295	7295		2	9606
KLFIGGLSFETTDESLR	1	1	Unmodified	1911.9942	0.99419293	118	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		21.04	21.04	3	0.0006466	14737	DP1063-9	120.59	89.475			NaN	NaN	NaN	0	0	Median	26583000	0	26583000	1571	118	1498	3499	7296	7296		1	9606
KLFNLSKEDDVR	2	1	Unmodified	1462.778	0.77799256	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	2	4	0				1		15.983	15.983	3	0.0044561	7956	DP1063-9	130.44	106.62			NaN	NaN	NaN	0	0	Median	19511000	0	19511000	1572	284	1499	3500	7297;7298	7298		2	9606
KLGVQTVAVYSEADR	1	1	Unmodified	1634.8628	0.86278482	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.67	0.943		2		1		17.054	17.054	2;3	3.7573E-10	9084	DP1063-7	198.48	164.61			1.0844	1.1355	14.954	3	0	Plateau	248680000	115160000	133520000	1573	483	1500	3501;3502;3503	7299;7300;7301;7302;7303;7304;7305;7306;7307;7308	7306		10	9606
KLHYNEGLNIK	2	0	Unmodified	1327.7248	0.72483478	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	1	4	0				1		14.992	14.992	3	1.3339E-05	6555	DP1063-9	155.26	93.304			NaN	NaN	NaN	0	0	Median	108610000	0	108610000	1574	205	1501	3504	7309;7310	7309		2	9606
KLIYGTVTEDNEEEDDDTLEELGGLFR	1	1	Unmodified	3099.4408	0.44079975	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	1	2	0		1				23.431	23.431	3	0.0024804	17641	DP1063-7	69.427	44.271			NaN	NaN	NaN	0	0	Median	6630100	0	6630100	1575	383	1502	3505	7311	7311		1	9606
KLLMMAGIDDCYTSAR	1	1	2 Oxidation (M)	1875.8529	0.85289012	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	1	4	0				1		16.875	16.875	3	0.00016634	9044	DP1063-9	135.23	116.78			NaN	NaN	NaN	0	0	Median	30986000	0	30986000	1576	141	1503	3506	7312;7313	7312	174;175	2	9606
KLPAIALDLLR	1	1	Unmodified	1221.7809	0.78089309	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				21.213	21.213	2	0.021411	14750	DP1063-7	106.18	77.26			NaN	NaN	NaN	0	0	Median	17974000	0	17974000	1577	493	1504	3507	7314;7315	7315		2	9606
KLSELERPHK	2	1	Unmodified	1235.6986	0.69862003	378	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	2	2	0		1				12.691	12.691	3	0.024416	3256	DP1063-7	99.788	51.047			NaN	NaN	NaN	0	0	Median	8898300	0	8898300	1578	378	1505	3508	7316	7316		1	9606
KLSVACFYGGTPYGGQFER	1	1	Unmodified	2136.0099	0.0098597649	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				19.65	19.65	3	0.04357	12695	DP1063-7	64.83	37.13			NaN	NaN	NaN	0	0	Median	16718000	0	16718000	1579	531	1506	3509	7317	7317		1	9606
KLTQTSGETTHTDKVPGGEDK	3	0	Unmodified	2228.0921	0.092069069	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	3	0			1			12.891	12.891	4	0.028634	4084	DP1063-8	64.723	48.125			NaN	NaN	NaN	0	0	Median	5246100	0	5246100	1580	211	1507	3510	7318;7319	7319		2	9606
KLYDIDVAK	2	0	Unmodified	1063.5914	0.59136099	283	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	16.387	16.387	2	0.032118	8966	DP1063-10	95.523	66.362			NaN	NaN	NaN	0	0	Median	50156000	0	50156000	1581	283	1508	3511	7320	7320		1	9606
KNESPFWK	2	0	Unmodified	1034.5185	0.5185304	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.142	16.142	2	0.051198	7866	DP1063-7	95.815	41.61			NaN	NaN	NaN	0	0	Median	23790000	0	23790000	1582	211	1509	3512	7321	7321		1	9606
KNFYFLEMNTR	1	1	Oxidation (M)	1477.7024	0.70238478	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2.5	0.5		1	1			18.039	18.039	2;3	0.0017292	10563	DP1063-8	71.268	36.495			0.91239	0.93619	7.2904	2	0	Median	87093000	46731000	40362000	1583	94	1510	3513;3514	7322;7323	7323	86	1	9606
KNIVQHTTDSSLEEK	2	0	Unmodified	1727.869	0.86899241	516	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2	0		1				13.728	13.728	3	0.00084652	4601	DP1063-7	119.17	78.927			NaN	NaN	NaN	0	0	Median	8357600	0	8357600	1584	516	1511	3515	7324;7325	7325		2	9606
KNLLVTMLIDQLCGR	1	1	Oxidation (M)	1788.959	0.95901017	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					22.71	22.71	2;3	0.00022187	14653	DP1063-6	115.26	90.465			1.3549	1.4308	16.967	2	0	Median	23998000	9567100	14430000	1585	355	1512	3516;3517	7326;7327;7328;7329;7330	7326	427	5	9606
KNVMEDPFPR	1	1	Oxidation (M)	1247.5969	0.59685707	444	Q86YF9	DZIP1	Zinc finger protein DZIP1	yes	yes	0	1	1	1	0	1					19.785	19.785	2	0.02439	10933	DP1063-6	57.047	57.047			0.84388	0.89119	NaN	1	0	Median	27688000	14069000	13619000	1586	444	1513	3518	7331	7331	535	0	9606
KPALVSTVEGGQDPK	2	0	Unmodified	1524.8148	0.814772	382	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	1	0	1					15.268	15.268	2	0.019857	5275	DP1063-6	94.402	50.632			NaN	NaN	NaN	0	0	Median	2695800	0	2695800	1587	382	1514	3519	7332	7332		1	9606
KPAPPQHFSPR	1	1	Unmodified	1260.6727	0.67273963	549	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	1	1.5	0.5	1	1				12.984	12.984	3	0.0026581	2474	DP1063-6	121.29	96.219			NaN	NaN	NaN	0	0	Median	10857000	0	10857000	1588	549	1515	3520;3521	7333;7334;7335;7336	7333		4	9606
KPEMFETAIK	2	0	Oxidation (M)	1208.6111	0.61111015	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	1	2	0		1				15.08	15.08	2	0.031033	6501	DP1063-7	45.161	45.161			0.78371	0.80877	NaN	1	0	Median	16816000	9500200	7315700	1589	316	1516	3522	7337	7337	379	0	9606
KPHIYYGSLEEKER	2	1	Unmodified	1747.8893	0.88933392	50	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	2	3	0			2			14.517	14.517	3;4	3.6489E-10	6131	DP1063-8	173.06	141.64			NaN	NaN	NaN	0	0	Median	36175000	0	36175000	1590	50	1517	3523;3524	7338;7339;7340;7341	7338		4	9606
KPIPLENPK	2	0	Unmodified	1034.6124	0.61243078	460	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	1	2	0		1				13.901	13.901	2	0.027515	4793	DP1063-7	97.635	49.786			NaN	NaN	NaN	0	0	Median	6795100	0	6795100	1591	460	1518	3525	7342	7342		1	9606
KPITTGGVTYR	1	1	Unmodified	1191.6612	0.66117189	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	4	0				2		14.182	14.182	2;3	3.0775E-05	5479	DP1063-9	125.97	89.587			0.75631	0.71525	NaN	1	0	Median	24089000	7169700	16919000	1592	377	1519	3526;3527	7343;7344;7345;7346;7347;7348	7345		6	9606
KPKPQINQWK	3	0	Unmodified	1265.7244	0.72444085	538	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	2	2	0		1				13.308	13.308	3	0.040533	4073	DP1063-7	91.087	50.093			NaN	NaN	NaN	0	0	Median	4835500	0	4835500	1593	538	1520	3528	7349	7349		1	9606
KPLFHGDSEIDQLFR	1	1	Unmodified	1800.9159	0.91588303	102	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	4	0				1		19.543	19.543	3	0.047625	12722	DP1063-9	35.711	15.532			0.89102	0.84264	NaN	1	0	Median	6839500	3365600	3473800	1594	102	1521	3529	7350	7350		0	9606
KPLPDHVSIVEPK	2	0	Unmodified	1457.8242	0.82421447	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		15.569	15.569	3	0.00029502	7295	DP1063-9	92.906	78.876			2.0998	2.2213	NaN	1	0	Median	21498000	8024600	13474000	1595	164	1522	3530	7351;7352	7351		2	9606
KPLPDHVSIVEPKDEILPTTPISEQK	3	0	Unmodified	2909.575	0.57498923	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	4	0				1		18.266	18.266	4	0.0025697	10919	DP1063-9	58.294	58.294			1.9366	2.0573	NaN	1	0	Median	25828000	10207000	15621000	1596	164	1523	3531	7353	7353		1	9606
KPNPVEEEPSR	1	1	Unmodified	1280.6361	0.63607935	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					12.976	12.976	3	0.0070515	2440	DP1063-6	95.618	57.623			NaN	NaN	NaN	0	0	Median	2017000	0	2017000	1597	211	1524	3532	7354;7355	7355		2	9606
KPVGEVHSQFSTGHANSPCTIIIGK	2	0	Unmodified	2663.349	0.34896923	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.816	1	1	1			16.369	16.369	3	2.2569E-08	8483	DP1063-8	120.44	95.422			NaN	NaN	NaN	0	0	Median	40293000	0	40293000	1598	211	1525	3533;3534;3535	7356;7357;7358;7359;7360;7361	7361		6	9606
KPVIVFVPSR	1	1	Unmodified	1140.7019	0.70191449	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	1	0	1					17.301	17.301	2	0.016947	7845	DP1063-6	68.626	52.482			NaN	NaN	NaN	0	0	Median	9827000	1212800	8614200	1599	71	1526	3536	7362	7362		1	9606
KQEIFYTAIVNR	1	1	Unmodified	1480.8038	0.80381338	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		2				18.159	18.159	2;3	0.00096554	10569	DP1063-7	141.1	112.37			NaN	NaN	NaN	0	0	Median	52698000	0	52698000	1600	532	1527	3537;3538	7363;7364;7365	7363		3	9606
KQGTIFLAGPPLVK	2	0	Unmodified	1467.8813	0.88133542	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			18.891	18.891	2;3	0.00048841	11665	DP1063-8	92.935	88.213			0.883	0.85956	3.171	2	0	Median	251540000	128720000	122820000	1601	524	1528	3539;3540	7366;7367;7368;7369;7370;7371;7372;7373;7374	7368		9	9606
KQMVIDVLHPGK	2	0	Oxidation (M)	1379.7595	0.75950572	289	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	5	0					1	15.57	15.57	3	0.0015899	7935	DP1063-10	70.089	30.359			7.4143	7.5562	NaN	1	0	Median	39607000	4139500	35468000	1602	289	1529	3541	7375;7376	7376	346	2	9606
KQTALVELLK	2	0	Unmodified	1141.7071	0.70705945	12	CON__P02769			yes	yes	0	0	1	1.92	1.27	7	3	1	1	1	22.657	22.657	2	2.3985E-08	10382	DP1063-8	219.72	99.259		+	NaN	NaN	NaN	0	0	Median	13123000000	13123000000	0	1603	12	1530	3542;3543;3544;3545;3546;3547;3548;3549;3550;3551;3552;3553;3554	7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389;7390;7391;7392;7393;7394;7395;7396;7397;7398;7399;7400;7401	7395		25	
KQVNYEVDR	1	1	Unmodified	1149.5778	0.57783619	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					13.452	13.452	2	0.00067383	2953	DP1063-6	116.37	85.068			0.87426	0.92328	NaN	1	0	Median	27071000	14650000	12420000	1604	355	1531	3555	7402;7403;7404;7405;7406	7402		5	9606
KQVNYEVDRR	1	2	Unmodified	1305.6789	0.67894722	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1.33	0.471	2	1				12.789	12.789	2;3	0.012753	2246	DP1063-6	88.948	59.99			0.90634	1.0693	12.52	3	0	Median	174940000	90046000	84889000	1605	355	1532	3556;3557;3558	7407;7408;7409;7410	7408		3	9606
KQVVNIPSFIVR	1	1	Unmodified	1398.8347	0.83471958	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					2	19.386	19.386	2;3	0.00067938	12868	DP1063-10	134.98	95.798			NaN	NaN	NaN	0	0	Median	89210000	0	89210000	1606	217	1533	3559;3560	7411;7412;7413	7411		3	9606
KREELSNVLAAMR	1	2	Oxidation (M)	1531.8141	0.81406049	580	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	2	5	0					1	15.475	15.475	3	0.00044406	7882	DP1063-10	95.273	75.695			12.707	14.683	NaN	1	0	Median	75243000	5402500	69840000	1607	580	1534	3561	7414;7415	7415	631	2	9606
KRPEDTAASALQEGQTQR	1	2	Unmodified	1984.9926	0.9926298	549	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	2	2	0		1				14.819	14.819	3	0.00098142	6067	DP1063-7	95.666	58.114			NaN	NaN	NaN	0	0	Median	0	0	0	1608	549	1535	3562	7416	7416		1	9606
KSAEPSANTTLVSETEEEGSVPAFGAAAK	2	0	Unmodified	2877.388	0.38797632	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	1	0	1					18.853	18.853	3	4.954E-12	9760	DP1063-6	129.22	105.7			NaN	NaN	NaN	0	0	Median	8646500	0	8646500	1609	365	1536	3563	7417;7418;7419	7418		3	9606
KSDVEAIFSK	2	0	Unmodified	1122.5921	0.59208927	111	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		16.897	16.897	2	0.020138	9133	DP1063-9	108.31	55.376			NaN	NaN	NaN	0	0	Median	17204000	0	17204000	1610	111	1537	3564	7420	7420		1	9606
KSEDGTPAEDGTPAATGGSQPPSMGR	1	1	Oxidation (M)	2516.1085	0.10852377	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	1	2.5	0.5		1	1			14.038	14.038	3	0.00012624	4974	DP1063-7	95.444	71.349			NaN	NaN	NaN	0	0	Median	17476000	0	17476000	1611	493	1538	3565;3566	7421;7422;7423	7422	575	3	9606
KSEIEYYAMLAK	2	0	Oxidation (M)	1460.7221	0.72211717	293	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	1	1	5	0					1	18.12	18.12	2	0.0018992	11137	DP1063-10	138.42	112.38			NaN	NaN	NaN	0	0	Median	21705000	0	21705000	1612	293	1539	3567	7424;7425	7425	349	2	9606
KSELEFETLK	2	0	Unmodified	1222.6445	0.64451877	419	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	1	2	0.816	1	1	1			19.359	19.359	2	0.00028377	12281	DP1063-8	110.12	84.546			0.72188	0.73451	77	3	0	Plateau	287020000	173050000	113970000	1613	419	1540	3568;3569;3570	7426;7427;7428;7429;7430;7431	7430		6	9606
KSFNDDAMLIEK	2	0	Oxidation (M)	1425.681	0.68098063	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	0		2				16.3	16.3	2;3	9.8515E-05	8068	DP1063-7	117.07	89.923			0.79072	0.816	40.585	2	0	Median	201710000	102520000	99185000	1614	483	1541	3571;3572	7432;7433;7434;7435;7436	7432	555	5	9606
KSGLQTDYATEK	2	0	Unmodified	1339.662	0.66195975	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				13.938	13.938	2	0.033689	4885	DP1063-7	118.61	58.588			NaN	NaN	NaN	0	0	Median	0	0	0	1615	211	1542	3573	7437	7437		1	9606
KSGVSDHWALDDHHALHLTR	1	1	Unmodified	2294.1305	0.13046068	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			2	2		16.044	16.044	2;4;5	3.7661E-07	8084	DP1063-8	136.81	136.81			1.0767	1.0826	8.3975	3	0	Median	499570000	228770000	270800000	1616	524	1543	3574;3575;3576;3577	7438;7439;7440;7441;7442;7443;7444;7445;7446	7438		9	9606
KSSGEIVYCGQVFEK	2	0	Unmodified	1729.8345	0.83452116	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	1	5	0					1	17.178	17.178	2	0.0042896	9978	DP1063-10	118.51	74.516			NaN	NaN	NaN	0	0	Median	4013800	0	4013800	1617	335	1544	3578	7447	7447		1	9606
KTASVLSKDDVAPESGDTTVK	3	0	Unmodified	2147.0958	0.095757464	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			14.993	14.993	3	0.025421	6809	DP1063-8	84.159	41.811			NaN	NaN	NaN	0	0	Median	18921000	0	18921000	1618	75	1545	3579	7448	7448		1	9606
KTEELEEESFPER	1	1	Unmodified	1621.7471	0.74714594	570	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				16.28	16.28	2	0.015907	8050	DP1063-7	103.08	73.157			NaN	NaN	NaN	0	0	Median	7367600	0	7367600	1619	570	1546	3580	7449	7449		1	9606
KTPANEKVEIQK	3	0	Unmodified	1383.7722	0.7721789	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			12.641	12.641	3	0.0077611	3818	DP1063-8	116.03	88.059			NaN	NaN	NaN	0	0	Median	46680000	0	46680000	1620	75	1547	3581	7450	7450		1	9606
KTQTPAAQPVPR	1	1	Unmodified	1292.7201	0.72008375	430	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	1	3	0			1			12.946	12.946	3	0.0049284	4123	DP1063-8	99.732	68.86			NaN	NaN	NaN	0	0	Median	5801000	0	5801000	1621	430	1548	3582	7451;7452	7452		2	9606
KTTHFVEGGDAGNREDQINR	1	2	Unmodified	2243.0679	0.067920004	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	4	0				2		13.699	13.699	3;4	0.0069313	4854	DP1063-9	103.5	72.527			10.367	12.087	NaN	1	0	Median	79265000	6535300	72730000	1622	152	1549	3583;3584	7453;7454;7455;7456	7456		4	9606
KTVTAMDVVYALK	2	0	Oxidation (M)	1453.7851	0.78505177	285	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	18.444	18.444	2;3	0.00087728	11645	DP1063-10	76.311	55.928			2.8793	2.9344	10.181	2	0	Median	47188000	10584000	36603000	1623	285	1550	3585;3586	7457;7458;7459;7460	7457	340	4	9606
KTVTAMDVVYALK	2	0	Unmodified	1437.7901	0.79013715	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	20.04	20.04	3	0.0053216	13746	DP1063-10	61.167	42.436			3.4921	3.5589	NaN	1	0	Median	10151000	2195900	7955100	1624	285	1550	3587	7461;7462	7461		2	9606
KTVTAMDVVYALKR	2	1	Oxidation (M)	1609.8862	0.8861628	285	P62805	HIST1H4A	Histone H4	yes	yes	0	1	2	5	0					1	17.669	17.669	3	0.0014234	10474	DP1063-10	80.387	80.387			3.5135	3.4304	NaN	1	0	Median	29062000	6199500	22863000	1625	285	1551	3588	7463;7464;7465	7463	340	3	9606
KTVTAMDVVYALKR	2	1	Unmodified	1593.8912	0.89124818	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	2	5	0					1	18.99	18.99	3	0.0011715	12366	DP1063-10	134.06	134.06			3.487	3.4045	NaN	1	0	Median	13329000	3414400	9914300	1626	285	1551	3589	7466;7467;7468	7466		3	9606
KVAPAPAVVK	2	0	Unmodified	978.6226	0.62260154	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		13.15	13.15	2	0.00028936	4191	DP1063-9	104.06	46.498			8.651	9.1515	NaN	1	0	Median	21842000	2419000	19423000	1627	280	1552	3590	7469;7470	7469		2	9606
KVDPMAIVVFHQADIGEYVR	1	1	Oxidation (M)	2302.178	0.17798773	564	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	1	1	5	0					1	19.794	19.794	3	0.00053578	13438	DP1063-10	117.37	102.82			NaN	NaN	NaN	0	0	Median	7545900	0	7545900	1628	564	1553	3591	7471	7471	624	1	9606
KVDVEEEFFALR	1	1	Unmodified	1480.7562	0.75619449	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.33	1.25	1	1		1		20.781	20.781	3	0.00076953	12282	DP1063-6	133.88	95.512			NaN	NaN	NaN	0	0	Median	61792000	0	61792000	1629	211	1554	3592;3593;3594	7472;7473;7474;7475;7476	7472		5	9606
KVEEAEPEEFVVEK	2	0	Unmodified	1660.8196	0.8195826	359	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	1	5	0					1	16.952	16.952	2	0.00050027	9756	DP1063-10	139.19	103.65			NaN	NaN	NaN	0	0	Median	5601600	0	5601600	1630	359	1555	3595	7477	7477		1	9606
KVEWTSDTVDNEHMGR	1	1	Oxidation (M)	1918.8479	0.84793939	66	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	1	5	0					1	14.774	14.774	3	0.016597	7091	DP1063-10	85.563	62.707			NaN	NaN	NaN	0	0	Median	10023000	0	10023000	1631	66	1556	3596	7478	7478	55	1	9606
KVGLIAAR	1	1	Unmodified	826.53887	0.53887191	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		14.097	14.097	2	0.0057288	5415	DP1063-9	88.643	41.876			12.413	11.739	NaN	1	0	Median	142500000	11569000	130930000	1632	298	1557	3597	7479;7480;7481	7481		3	9606
KVLQLLR	1	1	Unmodified	868.58582	0.5858221	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		16.322	16.322	2	0.018301	8433	DP1063-9	79.939	19.645			11.06	10.46	NaN	1	0	Median	153840000	14496000	139350000	1633	152	1558	3598	7482;7483;7484	7484		3	9606
KVNNADDFPNLFR	1	1	Unmodified	1548.7685	0.76849051	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.75	0.829	4	2	2			19.353	19.353	2;3	5.0928E-69	10384	DP1063-6	292.06	292.06			0.83056	0.8734	6.1494	4	0	Median	902970000	502110000	400860000	1634	355	1559	3599;3600;3601;3602;3603;3604;3605;3606	7485;7486;7487;7488;7489;7490;7491;7492;7493;7494;7495;7496;7497;7498;7499;7500;7501;7502;7503;7504	7489		20	9606
KVPQVSTPTLVEVSR	1	1	Unmodified	1638.9305	0.93047046	12	CON__P02769			no	no	0	0	1	2.69	0.97	14	46	46	26	3	24.221	24.221	2;3	6.9689E-92	16164	DP1063-8	274.38	235.98		+	NaN	NaN	NaN	0	0	Median	66347000000	66347000000	0	1635	12	1560	3607;3608;3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629;3630;3631;3632;3633;3634;3635;3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667;3668;3669;3670;3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741	7505;7506;7507;7508;7509;7510;7511;7512;7513;7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526;7527;7528;7529;7530;7531;7532;7533;7534;7535;7536;7537;7538;7539;7540;7541;7542;7543;7544;7545;7546;7547;7548;7549;7550;7551;7552;7553;7554;7555;7556;7557;7558;7559;7560;7561;7562;7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577;7578;7579;7580;7581;7582;7583;7584;7585;7586;7587;7588;7589;7590;7591;7592;7593;7594;7595;7596;7597;7598;7599;7600;7601;7602;7603;7604;7605;7606;7607;7608;7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639;7640;7641;7642;7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655;7656;7657;7658;7659;7660;7661;7662;7663;7664;7665;7666;7667;7668;7669;7670;7671;7672;7673;7674;7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695;7696;7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715;7716;7717;7718;7719;7720;7721;7722;7723;7724;7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761;7762;7763;7764;7765;7766;7767;7768;7769;7770;7771;7772;7773;7774;7775;7776;7777;7778;7779;7780;7781	7693		277	
KVTFGLNR	1	1	Unmodified	933.5396	0.53960019	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				15.514	15.514	2	0.014374	6943	DP1063-7	111.65	65.696			NaN	NaN	NaN	0	0	Median	108480000	0	108480000	1636	381	1561	3742	7782	7782		1	9606
KVVGCSCVVVK	2	0	Unmodified	1233.6573	0.65734884	169	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	1	5	0					2	14.015	14.015	2;3	0.0026238	6145	DP1063-10	68.44	68.44			3.6963	3.7671	NaN	1	0	Median	17125000	2878300	14246000	1637	169	1562	3743;3744	7783;7784;7785	7784		3	9606
KVVNPLFEK	2	0	Unmodified	1072.6281	0.62808085	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		16.337	16.337	2	0.00047415	8337	DP1063-9	120.99	78.592			12.98	13.731	NaN	1	0	Median	90608000	8319900	82288000	1638	280	1563	3745	7786	7786		1	9606
KVWLDPNETNEIANANSR	1	1	Unmodified	2070.013	0.013030887	324	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	1	5	0					2	18.116	18.116	2;3	0.00022355	11183	DP1063-10	126.8	95.684			NaN	NaN	NaN	0	0	Median	23779000	0	23779000	1639	324	1564	3746;3747	7787;7788;7789;7790	7787		4	9606
KYELGRPAANTK	2	1	Unmodified	1346.7306	0.73064844	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	2	5	0					1	13.172	13.172	3	0.0047373	5153	DP1063-10	78.548	56.22			8.0915	7.9001	NaN	1	0	Median	22691000	2310000	20381000	1640	267	1565	3748	7791	7791		1	9606
KYVIYIER	1	1	Unmodified	1082.6124	0.61243078	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	1	5	0					1	16.634	16.634	2	0.0028736	9260	DP1063-10	107.29	86.596			9.78	9.6517	NaN	1	0	Median	19718000	1714200	18004000	1641	255	1566	3749	7792;7793	7792		2	9606
LAAAEGLEPK	1	0	Unmodified	997.54441	0.5444108	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	0	4	0				1		15.947	15.947	2	0.034351	7807	DP1063-9	85.862	34.669			NaN	NaN	NaN	0	0	Median	17985000	0	17985000	1642	205	1567	3750	7794;7795	7794		2	9606
LAAAILGGVDQIHIKPGAK	2	0	Unmodified	1871.0993	0.09926712	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		18.556	18.556	4	0.029862	11431	DP1063-9	61.127	48.842			NaN	NaN	NaN	0	0	Median	20907000	0	20907000	1643	160	1568	3751	7796;7797	7796		2	9606
LAADDFR	0	1	Unmodified	806.39227	0.39226725	16;100;9	CON__P13645;P13645;CON__P02535-1;CON__A2A4G1;CON__P08779;Q7Z3Y7;CON__Q7Z3Y7;P08779;CON__Q148H6;CON__P08730-1;CON__Q3ZAW8;CON__ENSEMBL:ENSP00000377550;P13646;CON__P19012;P19012;CON__Q9Z2K1;CON__O76014;CON__Q9UE12;CON__Q2M2I5;CON__O76013;CON__A2AB72;CON__REFSEQ:XP_986630;CON__O76015;CON__Q15323;CON__Q14525;CON__A2A5Y0;Q92764;O76013;O76014;Q14532;Q15323;Q2M2I5;O76015;CON__Q14532;CON__Q497I4;CON__Q92764;Q14525;CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;Q04695;CON__Q6IFX2;P05783	KRT10;KRT28;KRT16;KRT13;KRT15;KRT35;KRT36;KRT37;KRT32;KRT31;KRT24;KRT38;KRT33B;KRT14;KRT17;KRT18	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 15;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha6;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha1;Keratin, type I cytoskeletal 24;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha3-II;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 18	no	no	0	0	0	2	0.816	1	1	1			16.268	16.268	2	0.0006718	8380	DP1063-8	143.37	63.428		+	0.13431	0.1372	NaN	1	0	Median	209650000	200810000	8844200	1644	16;9;100	1569	3752;3753;3754	7798;7799;7800;7801;7802	7802		5	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK	3	0	Unmodified	4245.5433	0.5432839	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	3	1.41	1			2		17.012	17.012	3;4	1.2182999999999999E-28	9175	DP1063-9	143.39	143.39			NaN	NaN	NaN	0	0	Median	156050000	0	156050000	1645	105	1570	3755;3756;3757	7803;7804;7805;7806;7807;7808;7809	7807		7	9606
LAANISGDK	1	0	Unmodified	887.47125	0.47124585	564	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	5	0					1	14.115	14.115	2	0.012578	6245	DP1063-10	78.516	39.71			3.3029	1.9594	NaN	1	0	Median	7034000	1695800	5338200	1646	564	1571	3758	7810	7810		1	9606
LAAVQLLQFLAPK	1	0	Unmodified	1410.8599	0.8598717	541	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				24.879	24.879	2	0.00021824	19380	DP1063-7	143.7	69.817			NaN	NaN	NaN	0	0	Median	2807300	0	2807300	1647	541	1572	3759	7811;7812	7811		2	9606
LACDVDQVTR	0	1	Unmodified	1175.5605	0.56047157	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.586	15.586	2	0.014492	5640	DP1063-6	102.06	44.472			NaN	NaN	NaN	0	0	Median	10190000	0	10190000	1648	318	1573	3760	7813;7814	7814		2	9606
LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	0	1	Oxidation (M)	3405.6122	0.61219615	310;434;492	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	3	0			1			24.325	24.325	3	1.8732E-05	18650	DP1063-8	59.219	49.161			1.4849	1.5386	NaN	1	0	Median	83140000	36525000	46615000	1649	310;434;492	1574	3761	7815;7816	7815	368	2	9606
LALVTGGEIASTFDHPELVK	1	0	Unmodified	2096.1154	0.11537069	317	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			21.279	21.279	3	0.0012993	14878	DP1063-8	82.765	82.765			2.4151	2.4324	NaN	1	0	Median	21575000	6360500	15214000	1650	317	1575	3762	7817	7817		1	9606
LAMQEFMILPVGAANFR	0	1	2 Oxidation (M)	1938.9696	0.96957485	104	P06733	ENO1	Alpha-enolase	yes	yes	0	2	0	4	0				1		22.01	22.01	2	0.016793	15950	DP1063-9	83.769	22.346			NaN	NaN	NaN	0	0	Median	0	0	0	1651	104	1576	3763	7818	7818	103;104	1	9606
LAPDYDALDVANK	1	0	Unmodified	1403.6933	0.69325988	283	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	18.811	18.811	2	0.00035712	12054	DP1063-10	139.15	139.15			13.038	7.7348	NaN	1	0	Median	225170000	19467000	205710000	1652	283	1577	3764	7819;7820	7820		2	9606
LAPITSDPTEATAVGAVEASFK	1	0	Unmodified	2174.1107	0.11067925	140	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			1			22.218	22.218	2	0.0036641	16030	DP1063-8	93.738	63.734			NaN	NaN	NaN	0	0	Median	0	0	0	1653	140	1578	3765	7821	7821		1	9606
LAQALQEDDFGVAWVEAFAKPVPQVDEAETR	1	1	Unmodified	3428.6888	0.68884979	530	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			24.233	24.233	3	0.0012502	18579	DP1063-8	63.713	20.263			NaN	NaN	NaN	0	0	Median	12149000	0	12149000	1654	530	1579	3766	7822	7822		1	9606
LAQEEESEAKR	1	1	Unmodified	1288.6259	0.62590859	33	O00541	PES1	Pescadillo homolog	yes	yes	0	0	1	3	0			1			12.577	12.577	3	0.002654	3699	DP1063-8	121.36	19.696			NaN	NaN	NaN	0	0	Median	11352000	0	11352000	1655	33	1580	3767	7823;7824	7823		2	9606
LAQFEPSQR	0	1	Unmodified	1074.5458	0.54580778	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				15.724	15.724	2	0.031563	7286	DP1063-7	89.029	38.989			NaN	NaN	NaN	0	0	Median	14606000	0	14606000	1656	345	1581	3768	7825	7825		1	9606
LAQHITYVHQHSR	0	1	Unmodified	1588.8223	0.82225741	186	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				12.814	12.814	3	0.0016615	3466	DP1063-7	80.746	42.347			1.553	1.6066	NaN	1	0	Median	5664700	2207200	3457500	1657	186	1582	3769	7826;7827;7828	7827		3	9606
LAQQELQK	1	0	Unmodified	956.5291	0.52909508	562	Q9UPP1	PHF8	Histone lysine demethylase PHF8	yes	yes	0	0	0	4	0				1		14.225	14.225	2	0.0035422	5572	DP1063-9	110.63	21.99			0.7738	0.79533	NaN	1	0	Median	8913200	4389800	4523400	1658	562	1583	3770	7829	7829		1	9606
LAQQMENRPSVQAALK	1	1	Oxidation (M)	1798.936	0.93596654	581	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	1	4	0				1		15.131	15.131	3	0.0016184	6751	DP1063-9	69.92	41.951			1.4545	1.3755	NaN	1	0	Median	24164000	9279300	14885000	1659	581	1584	3771	7830;7831;7832	7831	635	3	9606
LASASLLDTDKR	1	1	Unmodified	1288.6987	0.69867961	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	2	0		1				16.111	16.111	3	0.038824	7859	DP1063-7	66.326	39.812			NaN	NaN	NaN	0	0	Median	10645000	0	10645000	1660	543	1585	3772	7833	7833		1	9606
LASTNSSVLGADLPSSMK	1	0	Oxidation (M)	1792.8877	0.88767894	365	Q13428	TCOF1	Treacle protein	yes	yes	0	1	0	1.5	0.5	1	1				18.007	18.007	2	1.7638E-06	8633	DP1063-6	152.88	97.07			NaN	NaN	NaN	0	0	Median	34668000	0	34668000	1661	365	1586	3773;3774	7834;7835;7836;7837	7835	463	4	9606
LASVLVSDWMAVIR	0	1	Oxidation (M)	1574.849	0.84904901	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2	0		1				23.195	23.195	2	0.0031567	17342	DP1063-7	122.51	64.674			NaN	NaN	NaN	0	0	Median	8967200	0	8967200	1662	482	1587	3775	7838;7839	7839	549	2	9606
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	1	0	Unmodified	2773.4246	0.4246366	97	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	17.991	17.991	3	2.7321E-15	11081	DP1063-10	125.34	91.967			NaN	NaN	NaN	0	0	Median	41069000	0	41069000	1663	97	1588	3776	7840;7841;7842	7841		3	9606
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK	3	0	Unmodified	3273.6841	0.68409876	97	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	2	5	0					1	16.564	16.564	4	1.7382E-06	9201	DP1063-10	76.35	60.209			NaN	NaN	NaN	0	0	Median	10373000	0	10373000	1664	97	1589	3777	7843;7844;7845	7844		3	9606
LASYLDK	1	0	Unmodified	808.43307	0.43306943	16;19;9	CON__P35527;P35527;CON__Q99456;Q99456;CON__P13645;P13645;CON__A2A4G1;CON__P08779;P08779;CON__P08730-1;CON__P19012;P19012;CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;Q04695	KRT9;KRT12;KRT10;KRT16;KRT15;KRT14;KRT17	Keratin, type I cytoskeletal 9;Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	no	no	0	0	0	3	0			1			15.666	15.666	2	0.0052867	7624	DP1063-8	114.72	57.619		+	NaN	NaN	NaN	0	0	Median	95316000	95316000	0	1665	19;16;9	1590	3778	7846	7846		1	9606
LASYLDKVQALEEANNDLENK	2	0	Unmodified	2376.1809	0.18088408	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	2	1	1		1			20.471	20.471	3	8.0827E-06	13772	DP1063-8	110.38	76.713		+	NaN	NaN	NaN	0	0	Median	4530900	4530900	0	1666	19	1591	3779;3780	7847;7848	7848		2	9606
LATQLTGPVMPVR	0	1	Oxidation (M)	1397.7701	0.77007041	174	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	1	0	4.5	0.5				1	1	17.593	17.593	2	0.00030011	10478	DP1063-10	133.42	85.137			7.8254	5.6441	NaN	1	0	Median	80328000	5367400	74960000	1667	174	1592	3781;3782	7849;7850;7851;7852	7850	200	4	9606
LATQLTGPVMPVR	0	1	Unmodified	1381.7752	0.77515579	174	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4	0				1		18.934	18.934	2	0.0089708	11910	DP1063-9	102.95	41.19			NaN	NaN	NaN	0	0	Median	8621300	0	8621300	1668	174	1592	3783	7853	7853		1	9606
LATQSNEITIPVTFESR	0	1	Unmodified	1904.9844	0.98435652	90	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	20.754	20.754	2	0.00037997	14624	DP1063-10	107.99	107.99			0.92048	0.6639	NaN	1	0	Median	12756000	4853300	7902300	1669	90	1593	3784	7854;7855	7854		2	9606
LATTILQHWK	1	0	Unmodified	1209.687	0.68699271	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.138	18.138	3	0.01632	8863	DP1063-6	63.216	63.216			3.5853	3.6574	NaN	1	0	Median	12313000	5220500	7092300	1670	318	1594	3785	7856;7857	7856		2	9606
LAVEEFVHATSEGEAPGGCEGR	0	1	Unmodified	2301.0332	0.033173982	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.78	1.31	2	2	2	2	1	19.044	19.044	2;3	1.1472000000000001E-98	11768	DP1063-7	290.37	247.34			NaN	NaN	NaN	0	0	Median	660120000	0	660120000	1671	418	1595	3786;3787;3788;3789;3790;3791;3792;3793;3794	7858;7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869;7870;7871;7872;7873	7863		16	9606
LAVNMVPFPR	0	1	Oxidation (M)	1158.6219	0.62194961	311;109;373;366;414	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q13509;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	1	0	3.5	0.5			1	1		18.979	18.979	2	2.9074E-05	11758	DP1063-8	127.46	127.46			3.1514	3.2809	4.513	2	0	Median	254090000	62990000	191100000	1672	109;311;366;373;414	1596	3795;3796	7874;7875;7876;7877;7878;7879;7880;7881	7877	118	8	9606
LAVNMVPFPR	0	1	Unmodified	1142.627	0.62703499	311;109;373;366;414	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q13509;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	0	3.5	0.5			1	1		20.445	20.445	2	0.00016604	13943	DP1063-9	118.74	83.125			2.8895	3.0225	NaN	1	0	Median	56011000	2068200	53943000	1673	109;311;366;373;414	1596	3797;3798	7882;7883;7884;7885	7885		4	9606
LAVSAQSEPAR	0	1	Unmodified	1127.5935	0.59348625	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					14.61	14.61	2	0.00091486	4406	DP1063-6	142.98	41.522			NaN	NaN	NaN	0	0	Median	12289000	0	12289000	1674	73	1597	3799	7886;7887	7886		2	9606
LAWEQQEPGER	0	1	Unmodified	1341.6313	0.63132832	376	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				17.062	17.062	2	0.0092298	9101	DP1063-7	110.53	41.799			NaN	NaN	NaN	0	0	Median	9623300	0	9623300	1675	376	1598	3800	7888;7889	7888		2	9606
LAYIAHPK	1	0	Unmodified	911.52289	0.52288749	220	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	5	0					1	14.02	14.02	2	0.0030241	6067	DP1063-10	114.54	87.402			11.85	7.0295	NaN	1	0	Median	36499000	3526900	32972000	1676	220	1599	3801	7890;7891	7890		2	9606
LCLISTFLEDGIR	0	1	Unmodified	1535.8018	0.80176447	45	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	1	0	1					24.094	24.094	2	1.3375E-17	16323	DP1063-6	218.47	132.6			NaN	NaN	NaN	0	0	Median	4095800	0	4095800	1677	45	1600	3802	7892;7893	7893		2	9606
LCLTLHNNEGSYLAHTQGK	1	0	Unmodified	2155.048	0.048036185	404	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	3	0			2			17.139	17.139	3;4	5.9733E-05	9602	DP1063-8	106.31	84.18			0.67494	0.67977	7.0909	2	0	Median	108950000	65108000	43841000	1678	404	1601	3803;3804	7894;7895	7895		2	9606
LCNLEEGSPGSGTYTR	0	1	Unmodified	1739.7785	0.77846285	575	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	5	0					1	16.581	16.581	2	2.9893E-14	9200	DP1063-10	182.41	102.17			NaN	NaN	NaN	0	0	Median	12564000	0	12564000	1679	575	1602	3805	7896;7897	7897		2	9606
LCQPSSQEPAKR	1	1	Unmodified	1399.6878	0.68779734	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	1	1	0	1					12.771	12.771	3	0.0025605	2235	DP1063-6	109.16	73.492			NaN	NaN	NaN	0	0	Median	2208500	0	2208500	1680	57	1603	3806	7898;7899	7899		2	9606
LCVLHEK	1	0	Unmodified	897.47422	0.47422274	12	CON__P02769			yes	yes	0	0	0	2	1	1		1			14.01	14.01	2	0.00068462	3671	DP1063-6	128.48	67.512		+	NaN	NaN	NaN	0	0	Median	1093200000	1093200000	0	1681	12	1604	3807;3808	7900;7901;7902;7903	7900		4	
LCYVALDFEQEMATAASSSSLEK	1	0	Oxidation (M)	2565.1615	0.16147054	252	P63261;P60709;Q6S8J3	ACTG1;ACTB;POTEE	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E	yes	no	0	1	0	4	0				1		21.367	21.367	2	7.4359E-12	15139	DP1063-9	149.6	137.29			1.0603	1.0898	NaN	1	0	Median	11191000	5971000	5219500	1682	252	1605	3809	7904;7905	7904	309	2	9606
LDGEASINNR	0	1	Unmodified	1087.5258	0.52580062	80	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		14.465	14.465	2	0.00033413	5869	DP1063-9	97.431	26.051			0.8557	0.8951	NaN	1	0	Median	12656000	6607200	6048300	1683	80	1606	3810	7906;7907	7907		2	9606
LDGLVETPTGYIESLPR	0	1	Unmodified	1858.9676	0.96764382	245	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3.5	0.5			1	1		21.885	21.885	2	3.7156E-05	15650	DP1063-8	151.16	151.16			3.5555	3.6841	NaN	1	0	Median	28511000	3917000	24594000	1684	245	1607	3811;3812	7908;7909;7910;7911	7909		4	9606
LDHKFDLMYAK	2	0	Oxidation (M)	1395.6857	0.68567208	310;434;492	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	1	3.5	0.5			1	1		16.154	16.154	3	0.00039886	8175	DP1063-9	86.463	86.463			3.2568	3.3049	16.055	2	0	Median	336790000	83601000	253190000	1685	310;434;492	1608	3813;3814	7912;7913;7914;7915;7916;7917;7918	7917	367	7	9606
LDHKFDLMYAK	2	0	Unmodified	1379.6908	0.69075746	310;434;492	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	3.5	0.5			1	1		17.153	17.153	3	1.1376E-05	9598	DP1063-8	134.3	98.781			2.358	2.3928	6.6188	2	0	Median	59011000	10150000	48861000	1686	310;434;492	1608	3815;3816	7919;7920;7921	7919		3	9606
LDHYAIIK	1	0	Unmodified	971.54402	0.54401687	283	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	15.806	15.806	2	0.0018665	8283	DP1063-10	130.04	39.054			NaN	NaN	NaN	0	0	Median	25202000	0	25202000	1687	283	1609	3817	7922;7923	7922		2	9606
LDKAQIHDLVLVGGSTR	1	1	Unmodified	1821.0108	0.010846043	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			2			17.956	17.956	2;3	8.597E-33	10476	DP1063-8	227.91	190.3			NaN	NaN	NaN	0	0	Median	153510000	0	153510000	1688	124	1610	3818;3819	7924;7925;7926;7927	7926		4	9606
LDKSQIHDIVLVGGSTR	1	1	Unmodified	1837.0058	0.005760665	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	2.67	0.471		1	2			17.651	17.651	2;3	1.9423E-08	10080	DP1063-8	153.23	100.99			NaN	NaN	NaN	0	0	Median	20397000	0	20397000	1689	128	1611	3820;3821;3822	7928;7929;7930	7930		3	9606
LDLAGTLPGSK	1	0	Unmodified	1070.5972	0.59717465	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				18.661	18.661	2	0.025132	11350	DP1063-7	90.827	50.825			NaN	NaN	NaN	0	0	Median	51751000	0	51751000	1690	211	1612	3823;3824	7931;7932	7932		2	9606
LDLLGNLPGSK	1	0	Unmodified	1125.6394	0.63937381	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0.816	1	1	1			20.7	20.7	2	1.5125E-05	12193	DP1063-6	166.34	90.304			NaN	NaN	NaN	0	0	Median	65140000	0	65140000	1691	211	1613	3825;3826;3827	7933;7934;7935;7936;7937	7934		5	9606
LDLPGNLPGSK	1	0	Unmodified	1109.6081	0.60807369	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				18.756	18.756	2	0.017382	9634	DP1063-6	97.597	48.5			NaN	NaN	NaN	0	0	Median	35520000	0	35520000	1692	211	1614	3828;3829	7938;7939;7940	7938		3	9606
LDLTENLTGSK	1	0	Unmodified	1189.619	0.6190323	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1.5	0.5	1	1				18.595	18.595	2	1.513E-05	9414	DP1063-6	166.19	79.517			NaN	NaN	NaN	0	0	Median	151920000	0	151920000	1693	211	1615	3830;3831	7941;7942;7943;7944	7942		4	9606
LDLTENLTGSKR	1	1	Unmodified	1345.7201	0.72014333	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	1.5	0.5	1	1				17.183	17.183	3	0.0056762	9238	DP1063-7	96.756	66.733			NaN	NaN	NaN	0	0	Median	16982000	0	16982000	1694	211	1616	3832;3833	7945;7946;7947	7946		3	9606
LDNASAFQGAVISPHYDSLLVK	1	0	Unmodified	2344.2063	0.20631097	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.471	1	2				20.786	20.786	2;3	1.7858E-53	14076	DP1063-7	258.92	258.92			0.83613	0.85293	4.8347	3	0	Median	1041299999.9999999	550410000	490930000	1695	130	1617	3834;3835;3836	7948;7949;7950;7951;7952;7953;7954;7955;7956;7957;7958;7959;7960	7958		13	9606
LDPAASVTGSK	1	0	Unmodified	1044.5451	0.54513908	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1	0	1					15.62	15.62	2	0.035083	5666	DP1063-6	82.831	31.638			NaN	NaN	NaN	0	0	Median	13882000	0	13882000	1696	211	1618	3837	7961	7961		1	9606
LDQPGNLPGSNRR	0	2	Unmodified	1422.7328	0.7327737	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				14.601	14.601	3	0.0082208	4415	DP1063-6	88.155	36.314			NaN	NaN	NaN	0	0	Median	43074000	0	43074000	1697	211	1619	3838;3839	7962;7963;7964;7965	7963		4	9606
LDSELKNMQDMVEDYR	1	1	2 Oxidation (M)	2016.8769	0.87685626	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	1	0	1					16.563	16.563	2	0.00075732	6839	DP1063-6	136.93	104.31		+	NaN	NaN	NaN	0	0	Median	9533100	9533100	0	1698	88	1620	3840	7966;7967	7966	73;74	2	9606
LDSSPSVSSTLAAK	1	0	Unmodified	1361.7038	0.70382456	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				16.573	16.573	2	0.0019675	6847	DP1063-6	123.67	63.569			NaN	NaN	NaN	0	0	Median	24199000	0	24199000	1699	365	1621	3841;3842	7968;7969;7970	7969		3	9606
LDSVLLLSSMNLPGGELR	0	1	Oxidation (M)	1929.0241	0.024112846	372	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	1	0	4	0				1		22.295	22.295	2	0.00029363	16298	DP1063-9	136.33	105.89			NaN	NaN	NaN	0	0	Median	9988100	0	9988100	1700	372	1622	3843	7971;7972	7971	470	2	9606
LDVTLGPVPEIGGSEAPAPQNK	1	0	Unmodified	2188.1376	0.1375627	489	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		20.762	20.762	2	1.6164E-12	14364	DP1063-9	165.86	122.27			NaN	NaN	NaN	0	0	Median	7609000	0	7609000	1701	489	1623	3844	7973;7974	7973		2	9606
LDYILGLK	1	0	Unmodified	933.55352	0.55351892	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	20.56	20.56	2	0.0034888	14399	DP1063-10	111.04	42.551			15.828	9.39	NaN	1	0	Median	47078000	2840600	44238000	1702	217	1624	3845	7975;7976	7976		2	9606
LEAQEQAFLAR	0	1	Unmodified	1274.6619	0.66190017	424	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	4	0				1		17.97	17.97	2	0.00039366	10588	DP1063-9	150.27	69.812			NaN	NaN	NaN	0	0	Median	8366000	0	8366000	1703	424	1625	3846	7977;7978	7978		2	9606
LECVEPNCR	0	1	Unmodified	1175.5063	0.50632751	322	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	0	5	0					1	14.663	14.663	2	2.7127E-06	6868	DP1063-10	141.52	117.43			8.4767	6.1139	NaN	1	0	Median	72088000	8208800	63879000	1704	322	1626	3847	7979;7980;7981;7982	7980		4	9606
LEDCVLLATDVAAR	0	1	Unmodified	1544.7868	0.78684269	513	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				20.25	20.25	2	0.027393	13459	DP1063-7	83.397	50.791			NaN	NaN	NaN	0	0	Median	0	0	0	1705	513	1627	3848	7983	7983		1	9606
LEGGSGGDSEVQR	0	1	Unmodified	1289.5848	0.58477206	266	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	4	0				2		13.343	13.343	2	0.0023307	4426	DP1063-9	126.67	87.649			NaN	NaN	NaN	0	0	Median	4205000	0	4205000	1706	266	1628	3849;3850	7984;7985;7986	7985		3	9606
LEGLGSSEADQDGLASTVR	0	1	Unmodified	1903.9123	0.91231379	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.608	18.608	2	0.00026658	11376	DP1063-8	127.71	96.983			NaN	NaN	NaN	0	0	Median	17479000	17479000	0	1707	344	1629	3851	7987	7987		1	9606
LEGLTDEINFLR	0	1	Unmodified	1418.7405	0.74054442	13	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	4	0				1		22.364	22.364	2	4.3685E-06	16430	DP1063-9	157.66	88.388		+	NaN	NaN	NaN	0	0	Median	5770600	5770600	0	1708	13	1630	3852	7988;7989	7988		2	9606
LELQGPR	0	1	Unmodified	811.4552	0.45520186	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				15.675	15.675	2	0.006496	7162	DP1063-7	111.69	32.234			NaN	NaN	NaN	0	0	Median	14662000	14662000	0	1709	155	1631	3853	7990;7991	7991		2	9606
LENEIQTYR	0	1	Unmodified	1164.5775	0.57750184	16	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	0	1					16.192	16.192	2	0.00021574	6427	DP1063-6	209.84	127.53		+	NaN	NaN	NaN	0	0	Median	41930000	41930000	0	1710	16	1632	3854	7992;7993	7992		2	9606
LEPHKPQQIPIDSTVSFGASTR	1	1	Unmodified	2407.2496	0.24957276	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				2		17.532	17.532	3;4	6.1018E-05	9960	DP1063-9	118.05	79.706			NaN	NaN	NaN	0	0	Median	24350000	0	24350000	1711	352	1633	3855;3856	7994;7995;7996	7995		3	9606
LEQQVPVNQVFGQDEMIDVIGVTK	1	0	Oxidation (M)	2701.3633	0.36328189	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	3	1.41	1			2		21.838	21.838	2;3	3.5718E-06	15713	DP1063-9	112.42	78.443			NaN	NaN	NaN	0	0	Median	57647000	0	57647000	1712	201	1634	3857;3858;3859	7997;7998;7999;8000;8001;8002	8000	227	6	9606
LEQQVPVNQVFGQDEMIDVIGVTK	1	0	Unmodified	2685.3684	0.36836727	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		23.025	23.025	2	0.028408	17249	DP1063-9	69.069	45.113			NaN	NaN	NaN	0	0	Median	3716500	0	3716500	1713	201	1634	3860	8003;8004	8003		2	9606
LESEGSPETLTNLR	0	1	Unmodified	1544.7682	0.76821574	547	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	0	1					18.009	18.009	2	1.7377E-07	8609	DP1063-6	156.58	93.506			NaN	NaN	NaN	0	0	Median	8664100	0	8664100	1714	547	1635	3861	8005;8006	8006		2	9606
LFCVGFTK	1	0	Unmodified	970.49462	0.49462383	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		19.324	19.324	2	0.0044208	12464	DP1063-9	120.62	86.618			NaN	NaN	NaN	0	0	Median	45306000	0	45306000	1715	254	1636	3862	8007;8008	8008		2	9606
LFEGNALLR	0	1	Unmodified	1031.5764	0.57637963	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	19.354	19.354	2	0.00027504	12796	DP1063-10	128.57	63.763			17.676	12.749	NaN	1	0	Median	270120000	19817000	250300000	1716	217	1637	3863	8009;8010;8011;8012	8009		4	9606
LFEYGGFPPESNYLFLGDYVDR	0	1	Unmodified	2597.2115	0.21145592	194;264	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.5	0.5			2	2		25.076	25.076	2;3	4.7648E-08	19458	DP1063-8	148.57	148.57			NaN	NaN	NaN	0	0	Median	85099000	0	85099000	1717	194;264	1638	3864;3865;3866;3867	8013;8014;8015;8016;8017;8018	8014		6	9606
LFHEVVQAFR	0	1	Unmodified	1244.6666	0.66659162	579	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				18.517	18.517	3	0.0063063	11063	DP1063-7	102.06	74.732			NaN	NaN	NaN	0	0	Median	10254000	0	10254000	1718	579	1639	3868	8019;8020	8019		2	9606
LFIGGLNVQTSESGLR	0	1	Unmodified	1689.905	0.90498399	357	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	4	0				1		21.029	21.029	2	1.2128E-13	14712	DP1063-9	174.24	116.36			NaN	NaN	NaN	0	0	Median	12440000	0	12440000	1719	357	1640	3869	8021;8022	8021		2	9606
LFIGGLSFETTDESLR	0	1	Unmodified	1783.8992	0.89922991	118	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		22.803	22.803	2	1.0828E-20	16919	DP1063-9	211.63	160.36			NaN	NaN	NaN	0	0	Median	32714000	0	32714000	1720	118	1641	3870	8023;8024	8023		2	9606
LFISHFLLK	1	0	Unmodified	1116.6696	0.66955173	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.56	1.17	1	5	1	1	1	23.583	23.583	2	0.00066728	13981	DP1063-7	118.74	118.74			49.826	51.342	NaN	1	0	Median	537160000	4706400	532450000	1721	418	1642	3871;3872;3873;3874;3875;3876;3877;3878;3879	8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040	8029		16	9606
LFLQGPK	1	0	Unmodified	801.47487	0.47487467	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.632		1	3	1		17.477	17.477	2	0.0034217	9850	DP1063-9	101.33	66.436			0.99522	1.0242	7.1319	2	0	Median	528250000	266860000	261390000	1722	130	1643	3880;3881;3882;3883;3884	8041;8042;8043;8044;8045;8046;8047;8048;8049;8050	8048		10	9606
LFNLSKEDDVR	1	1	Unmodified	1334.683	0.68302954	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	1	4	0				1		17.21	17.21	3	0.00012497	9499	DP1063-9	101.35	101.35			9.3417	8.8344	NaN	1	0	Median	38971000	3880300	35091000	1723	284	1644	3885	8051	8051		1	9606
LFQECCPHSTDR	0	1	Unmodified	1548.6449	0.64494625	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			14.639	14.639	2;3	5.9921E-07	6274	DP1063-8	160.72	160.72			3.7491	3.8847	NaN	1	0	Median	44692000	6915500	37776000	1724	262	1645	3886;3887	8052;8053;8054;8055	8052		4	9606
LFSMENWGGATFDVAMR	0	1	2 Oxidation (M)	1962.8604	0.86041834	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	0	2	0		2				21.297	21.297	2;3	1.0398E-18	14812	DP1063-7	193	141.56			0.97763	0.99607	2.1321	2	0	Median	239920000	117180000	122750000	1725	130	1646	3888;3889	8056;8057;8058;8059;8060;8061	8058	160;161	6	9606
LFSMENWGGATFDVAMR	0	1	Oxidation (M)	1946.8655	0.86550371	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				22.253	22.253	2	0.00066269	16083	DP1063-7	122.52	108.56			1.0996	1.1364	NaN	1	0	Median	29852000	13344000	16508000	1726	130	1646	3890	8062;8063	8062	160;161	2	9606
LFTFHADICTLPDTEK	1	0	Unmodified	1906.9135	0.91349976	12	CON__P02769			yes	yes	0	0	0	2.92	0.595	1	4	29	1	1	25.562	25.562	2;3	8.0097E-32	13307	DP1063-8	239.03	159.01		+	NaN	NaN	NaN	0	0	Median	2225400000	2225400000	0	1727	12	1647	3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926	8064;8065;8066;8067;8068;8069;8070;8071;8072;8073;8074;8075;8076;8077;8078;8079;8080;8081;8082;8083;8084;8085;8086;8087;8088;8089;8090;8091;8092;8093;8094;8095;8096;8097;8098;8099;8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113;8114;8115;8116;8117;8118;8119;8120;8121;8122;8123	8076		60	
LFVGGIKEDTEEHHLR	1	1	Unmodified	1878.9588	0.95881047	161	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				2		15.88	15.88	3;4	0.0049081	7991	DP1063-9	82.578	0			NaN	NaN	NaN	0	0	Median	32048000	0	32048000	1728	161	1648	3927;3928	8124;8125	8125		2	9606
LFVTNDAATILR	0	1	Unmodified	1332.7402	0.74015049	232	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			20.471	20.471	2	0.0082674	13792	DP1063-8	107.24	65.704			NaN	NaN	NaN	0	0	Median	9786000	0	9786000	1729	232	1649	3929	8126;8127	8126		2	9606
LFYLSGMVHGEYQNQEIHNLGR	0	1	Oxidation (M)	2620.2493	0.24925519	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	1	0	2	0		1				18.658	18.658	4	0.049753	11364	DP1063-7	44.788	23.306			NaN	NaN	NaN	0	0	Median	16601000	0	16601000	1730	383	1650	3930	8128	8128		1	9606
LGAGEGGEASVSPEK	1	0	Unmodified	1386.6627	0.66268803	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				14.784	14.784	2	3.2353E-08	5982	DP1063-7	156.14	123.72			NaN	NaN	NaN	0	0	Median	21697000	0	21697000	1731	365	1651	3931;3932	8129;8130;8131	8130		3	9606
LGASLAFNNIYR	0	1	Unmodified	1337.7092	0.70918471	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.203	20.203	2	0.0073618	11522	DP1063-6	108.57	73.392			NaN	NaN	NaN	0	0	Median	14231000	0	14231000	1732	318	1652	3933	8132	8132		1	9606
LGEHNIDVLEGNEQFINAAK	1	0	Unmodified	2210.0968	0.096760517	8	CON__P00761			yes	yes	0	0	0	3.06	1.31	10	17	17	15	13	29.905	29.905	2;3	6.0716E-169	12759	DP1063-8	355.95	321.19		+	NaN	NaN	NaN	0	0	Median	920920000	920920000	0	1733	8	1653	3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005	8133;8134;8135;8136;8137;8138;8139;8140;8141;8142;8143;8144;8145;8146;8147;8148;8149;8150;8151;8152;8153;8154;8155;8156;8157;8158;8159;8160;8161;8162;8163;8164;8165;8166;8167;8168;8169;8170;8171;8172;8173;8174;8175;8176;8177;8178;8179;8180;8181;8182;8183;8184;8185;8186;8187;8188;8189;8190;8191;8192;8193;8194;8195;8196;8197;8198;8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215;8216;8217;8218;8219;8220;8221;8222;8223;8224;8225;8226;8227;8228;8229;8230;8231;8232;8233;8234;8235;8236;8237;8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249;8250;8251;8252;8253;8254;8255;8256;8257;8258;8259	8204		127	
LGEWVGLCK	1	0	Unmodified	1060.5376	0.53755128	169	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	19.331	19.331	2	0.011901	12802	DP1063-10	105.14	73.714			NaN	NaN	NaN	0	0	Median	6294600	0	6294600	1734	169	1654	4006	8260	8260		1	9606
LGEYGFQNALIVR	0	1	Unmodified	1478.7882	0.78816332	12	CON__P02769			yes	yes	0	0	0	3	0.552	2	2	50	4	1	23.903	23.903	2;3	2.1031999999999998E-44	20616	DP1063-8	256.24	185.69		+	NaN	NaN	NaN	0	0	Median	8446599999.999999	8446599999.999999	0	1735	12	1655	4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062;4063;4064;4065	8261;8262;8263;8264;8265;8266;8267;8268;8269;8270;8271;8272;8273;8274;8275;8276;8277;8278;8279;8280;8281;8282;8283;8284;8285;8286;8287;8288;8289;8290;8291;8292;8293;8294;8295;8296;8297;8298;8299;8300;8301;8302;8303;8304;8305;8306;8307;8308;8309;8310;8311;8312;8313;8314;8315;8316;8317;8318;8319;8320;8321;8322;8323;8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337;8338;8339;8340;8341;8342;8343;8344;8345;8346;8347;8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358;8359;8360;8361;8362;8363;8364;8365;8366;8367;8368;8369;8370;8371;8372;8373;8374;8375;8376;8377;8378;8379;8380;8381;8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392;8393;8394;8395;8396;8397;8398;8399	8357		139	
LGGIGQFLAK	1	0	Unmodified	1002.5862	0.58621603	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				19.955	19.955	2	0.0095541	13059	DP1063-7	112.17	70.944			NaN	NaN	NaN	0	0	Median	9436200	0	9436200	1736	345	1656	4066	8400;8401	8400		2	9606
LGGIPVGVIAVETR	0	1	Unmodified	1379.8136	0.81364979	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.816	20.816	2	0.0026053	12341	DP1063-6	93.442	93.442			0.78783	0.82546	NaN	1	0	Median	7612300	4390900	3221500	1737	38	1657	4067	8402	8402		1	9606
LGGIPVGVVAVETR	0	1	Unmodified	1365.798	0.79799972	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.56	1.12	14	1		3		23.789	23.789	2	0.00021956	11270	DP1063-6	149.94	103.12			0.98657	1.027	5.1087	8	0	Median	743220000	392160000	351070000	1738	355	1658	4068;4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082;4083;4084;4085	8403;8404;8405;8406;8407;8408;8409;8410;8411;8412;8413;8414;8415;8416;8417;8418;8419;8420;8421;8422;8423;8424;8425;8426;8427;8428;8429;8430;8431;8432	8405		30	9606
LGIYTVLFER	0	1	Unmodified	1209.6758	0.67575932	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		22.848	22.848	2	3.0862E-07	16987	DP1063-9	140.35	140.35			3.2436	3.3929	NaN	1	0	Median	7699800	1654300	6045500	1739	337	1659	4086	8433;8434	8433		2	9606
LGLKDQQER	1	1	Unmodified	1085.5829	0.58292157	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0		2				13.334	13.334	2;3	0.032852	4115	DP1063-7	146.69	59.512			NaN	NaN	NaN	0	0	Median	51383000	0	51383000	1740	418	1660	4087;4088	8435;8436	8436		2	9606
LGPHTVLTFIFLEQMNK	1	0	Oxidation (M)	2003.055	0.055019043	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	1	0	4	0				1		22.59	22.59	3	0.022284	16696	DP1063-9	69.431	37.835			NaN	NaN	NaN	0	0	Median	5499000	0	5499000	1741	337	1661	4089	8437;8438;8439	8437	401	3	9606
LGQAELVVIDEAAAIPLPLVK	1	0	Unmodified	2158.2613	0.26130665	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				25.084	25.084	2	0.00038549	19655	DP1063-7	106.82	81.885			NaN	NaN	NaN	0	0	Median	0	0	0	1742	514	1662	4090	8440	8440		1	9606
LGSTVFVANLDYK	1	0	Unmodified	1425.7504	0.75038083	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2	0		1				20.244	20.244	2	0.0019504	13468	DP1063-7	90.653	68.625			1.0922	1.1254	NaN	1	0	Median	42669000	17757000	24912000	1743	236	1663	4091	8441;8442;8443	8443		3	9606
LGTEPTSETQDELQR	0	1	Unmodified	1702.801	0.80097243	47	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				16.187	16.187	2	0.00048849	7934	DP1063-7	125.28	73.848			NaN	NaN	NaN	0	0	Median	0	0	0	1744	47	1664	4092	8444	8444		1	9606
LGTPELSTAER	0	1	Unmodified	1172.6037	0.60371659	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3.33	1.37	1	1		3	1	16.464	16.464	2	0.00012336	8242	DP1063-7	120.45	66.484			0.94951	0.9582	12.709	2	0	Median	595000000	326260000	268730000	1745	355	1665	4093;4094;4095;4096;4097;4098	8445;8446;8447;8448;8449;8450;8451;8452;8453;8454;8455;8456	8452		12	9606
LGTPELSTAERK	1	1	Unmodified	1300.6987	0.69867961	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					15.099	15.099	2;3	0.00093293	4986	DP1063-6	66.538	66.538			0.9902	1.0457	3.2526	2	0	Median	62562000	29812000	32751000	1746	355	1666	4099;4100	8457;8458;8459;8460;8461	8457		5	9606
LGTPQQIAIAR	0	1	Unmodified	1166.6772	0.6771563	437;474	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				17.187	17.187	2	0.0028026	9313	DP1063-7	82.426	67.488			0.47476	0.49227	NaN	1	0	Median	13385000	9959500	3425300	1747	437;474	1667	4101	8462	8462		1	9606
LGVCFDVPTASVTEIQEK	1	0	Unmodified	1991.9874	0.98739299	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				21.197	21.197	2	0.00034275	14724	DP1063-7	132.97	79.755			NaN	NaN	NaN	0	0	Median	19094000	0	19094000	1748	531	1668	4102	8463	8463		1	9606
LGVQTVAVYSEADR	0	1	Unmodified	1506.7678	0.7678218	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				18.467	18.467	2	3.0587E-23	10990	DP1063-7	208.17	208.17			1.0786	1.0866	NaN	1	0	Median	154180000	70771000	83411000	1749	483	1669	4103	8464;8465;8466;8467	8467		4	9606
LGVQVVITDPEKLDQIR	1	1	Unmodified	1922.0837	0.083676635	149	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	1	3	0			1			20.133	20.133	3	0.024509	13375	DP1063-8	74.141	42.908			NaN	NaN	NaN	0	0	Median	21979000	0	21979000	1750	149	1670	4104	8468	8468		1	9606
LGVTNTIISHYDGR	0	1	Unmodified	1544.7947	0.79470526	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				18.182	18.182	3	7.8787E-08	10596	DP1063-7	156	112.71			NaN	NaN	NaN	0	0	Median	30389000	0	30389000	1751	212	1671	4105	8469;8470	8470		2	9606
LHDLYWQAMK	1	0	Oxidation (M)	1319.6332	0.63324258	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				16.974	16.974	3	0.052222	8993	DP1063-7	51.528	23.666			NaN	NaN	NaN	0	0	Median	17394000	0	17394000	1752	493	1672	4106	8471	8471		1	9606
LHDSVVMVTQESDSSFLVK	1	0	Oxidation (M)	2136.0409	0.040885122	511	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	1	0	5	0					1	18.782	18.782	3	0.00066232	12078	DP1063-10	109.04	73.997			NaN	NaN	NaN	0	0	Median	10304000	0	10304000	1753	511	1673	4107	8472;8473;8474;8475	8473	584	4	9606
LHFFMPGFAPLTSR	0	1	Oxidation (M)	1635.8232	0.82316861	311;109;373;414	P07437;A6NNZ2;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	1	0	3.36	0.643			8	2	1	26.073	26.073	2;3	0.00018413	14263	DP1063-9	134.08	134.08			3.123	3.2513	2.3863	4	0	Median	632830000	146220000	486610000	1754	109;311;373;414	1674	4108;4109;4110;4111;4112;4113;4114;4115;4116;4117;4118	8476;8477;8478;8479;8480;8481;8482;8483;8484;8485;8486;8487;8488;8489;8490;8491;8492;8493;8494;8495	8491	119	20	9606
LHFFMPGFAPLTSR	0	1	Unmodified	1619.8283	0.82825399	311;109;373;414	P07437;A6NNZ2;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	0	3.5	0.5			2	2		22.076	22.076	2;3	0.0004405	15855	DP1063-8	175.65	88.317			3.4779	3.6208	15.838	4	0	Median	181630000	33312000	148310000	1755	109;311;373;414	1674	4119;4120;4121;4122	8496;8497;8498;8499;8500;8501;8502;8503;8504;8505;8506;8507;8508	8500		13	9606
LHNELQSGSLR	0	1	Unmodified	1252.6524	0.65239812	420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				14.676	14.676	2	0.0171	5900	DP1063-7	98.044	39.448			NaN	NaN	NaN	0	0	Median	3764800	0	3764800	1756	420	1675	4123	8509	8509		1	9606
LHVTALDYLAPYAK	1	0	Unmodified	1573.8504	0.85042922	564	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	5	0					2	20.685	20.685	2;3	0.0023005	14618	DP1063-10	107.39	62.272			NaN	NaN	NaN	0	0	Median	10911000	0	10911000	1757	564	1676	4124;4125	8510;8511;8512	8511		3	9606
LHYCVSCAIHSK	1	0	Unmodified	1473.6857	0.68568885	291	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	5	0					1	14.842	14.842	3	9.9504E-07	7143	DP1063-10	155.47	142.24			7.4352	4.4108	NaN	1	0	Median	24668000	3264400	21403000	1758	291	1677	4126	8513;8514	8514		2	9606
LHYNEGLNIK	1	0	Unmodified	1199.6299	0.62987176	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	0	4	0				2		16.079	16.079	2;3	0.0014021	8058	DP1063-9	166.07	100.61			NaN	NaN	NaN	0	0	Median	77131000	0	77131000	1759	205	1678	4127;4128	8515;8516;8517	8516		3	9606
LIAHAGSLTNLAK	1	0	Unmodified	1307.7561	0.75613491	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			2			16.45	16.45	2;3	1.2832E-07	8660	DP1063-8	162.93	118.31			NaN	NaN	NaN	0	0	Median	89540000	0	89540000	1760	35	1679	4129;4130	8518;8519;8520;8521	8518		4	9606
LIAPVAEEEATVPNNK	1	0	Unmodified	1693.8887	0.88866522	107	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		17.825	17.825	2	1.7492E-06	10377	DP1063-9	160.72	160.72			0.45893	0.4717	NaN	1	0	Median	17700000	10805000	6895200	1761	107	1680	4131	8522;8523;8524;8525	8524		4	9606
LIASVAGSVER	0	1	Unmodified	1100.619	0.61897272	372	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	4	0				1		16.742	16.742	2	0.0072725	8903	DP1063-9	120.99	57.172			NaN	NaN	NaN	0	0	Median	25554000	0	25554000	1762	372	1681	4132	8526;8527	8527		2	9606
LIDFLECGK	1	0	Unmodified	1093.5478	0.54778161	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			2			20.546	20.546	2	0.016374	13883	DP1063-8	145.34	58.869			NaN	NaN	NaN	0	0	Median	0	0	0	1763	148	1682	4133;4134	8528;8529	8528		2	9606
LIDLHSPSEIVK	1	0	Unmodified	1349.7555	0.7554662	253	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					1	18.012	18.012	3	0.00038533	11113	DP1063-10	115	94.88			3.3547	1.9901	NaN	1	0	Median	50680000	10860000	39821000	1764	253	1683	4135	8530;8531;8532	8532		3	9606
LIDWGLAEFYHPGQEYNVR	0	1	Unmodified	2306.112	0.11201665	312	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	4	0				1		22.283	22.283	3	1.5707999999999998E-19	16289	DP1063-9	195.89	195.89			7.17	7.5001	NaN	1	0	Median	15854000	1827200	14026000	1765	312	1684	4136	8533;8534	8534		2	9606
LIEAEDNMNCQMSNITVTYR	0	1	2 Oxidation (M)	2433.061	0.061044991	279	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	2	0	5	0					1	17.88	17.88	2	1.0215E-13	10904	DP1063-10	153.39	133.81			NaN	NaN	NaN	0	0	Median	0	0	0	1766	279	1685	4137	8535	8535	333;334	1	9606
LIEEEEEKQK	2	0	Unmodified	1273.6402	0.64016167	497	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	1	1.5	0.5	1	1				13.149	13.149	2;3	0.0029025	2665	DP1063-6	119.62	66.405			NaN	NaN	NaN	0	0	Median	11443000	0	11443000	1767	497	1686	4138;4139	8536;8537;8538;8539	8538		4	9606
LIEVDDER	0	1	Unmodified	987.48729	0.48728985	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		15.906	15.906	2	0.00039745	7776	DP1063-9	135.84	91.15			10.865	11.365	NaN	1	0	Median	157390000	13325000	144060000	1768	284	1687	4140	8540;8541;8542;8543	8540		4	9606
LIGEYGLR	0	1	Unmodified	919.51272	0.51271674	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	17.955	17.955	2	0.0017201	11003	DP1063-10	124.37	68.348			17.32	12.492	NaN	1	0	Median	326530000	15693000	310840000	1769	217	1688	4141	8544;8545;8546;8547	8544		4	9606
LIGPLSHSILTEAIK	1	0	Unmodified	1590.9345	0.9344932	484	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0		1				20.508	20.508	3	4.7686E-05	13800	DP1063-7	139.77	76.59			NaN	NaN	NaN	0	0	Median	0	0	0	1770	484	1689	4142	8548	8548		1	9606
LIGQIVSSITASLR	0	1	Unmodified	1456.8613	0.86132826	434	Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1A;TUBA3E	Tubulin alpha-1A chain;Tubulin alpha-3E chain	yes	no	0	0	0	3	0			1			23.821	23.821	2	4.9321E-10	18022	DP1063-8	174.4	174.4			3.7102	3.8444	NaN	1	0	Median	16930000	3637800	13292000	1771	434	1690	4143	8549;8550;8551;8552	8549		4	9606
LIGTFTEKDIELILLMLK	2	0	Oxidation (M)	2105.2058	0.20576561	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	1	2	0		2				25.292	25.292	2;3	0.0010338	19789	DP1063-7	131.35	101.81			NaN	NaN	NaN	0	0	Median	16497000	0	16497000	1772	418	1691	4144;4145	8553;8554;8555;8556	8554	510	4	9606
LILIESR	0	1	Unmodified	842.52255	0.52255314	274	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	18.088	18.088	2	0.00099294	11133	DP1063-10	128.48	41.618			10.061	7.2564	NaN	1	0	Median	254530000	22824000	231710000	1773	274	1692	4146	8557;8558	8557		2	9606
LILISTNGSFIR	0	1	Unmodified	1332.7765	0.776536	433	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		21.163	21.163	2	3.9105E-06	14871	DP1063-9	166.33	72.023			NaN	NaN	NaN	0	0	Median	15619000	0	15619000	1774	433	1693	4147	8559;8560	8559		2	9606
LILPLKEILQNTTSLK	2	0	Unmodified	1823.1132	0.11318585	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	1	1	0	2					22.758	22.758	3	0.014018	14785	DP1063-6	95.067	76.929			NaN	NaN	NaN	0	0	Median	0	0	0	1775	73	1694	4148;4149	8561;8562	8562		2	9606
LILPVGPAGGNQMLEQYDK	1	0	Oxidation (M)	2058.0456	0.045576569	159	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	0	5	0					1	20.361	20.361	2	0.0060186	14136	DP1063-10	106.29	59.496			NaN	NaN	NaN	0	0	Median	5144700	5144700	0	1776	159	1695	4150	8563;8564	8563	186	2	9606
LILPVGPAGGNQMLEQYDKLQDGSIK	2	0	Oxidation (M)	2799.4477	0.44768022	159	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	5	0					1	20.502	20.502	3	3.5341E-11	14375	DP1063-10	130.17	107.81			0.59236	0.60369	NaN	1	0	Median	33466000	22119000	11346000	1777	159	1696	4151	8565;8566;8567;8568;8569	8569	186	5	9606
LILSETSIFDVLPNFFYHSNQVVR	0	1	Unmodified	2837.4752	0.4752156	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				25.797	25.797	3	4.7039E-11	18201	DP1063-6	138.28	138.28			0.91731	0.95269	26.143	2	0	Median	9691700	5037300	4654400	1778	355	1697	4152;4153	8570;8571;8572;8573;8574;8575	8570		6	9606
LINELNER	0	1	Unmodified	999.53491	0.53490874	573	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		16.077	16.077	2	0.0010003	8093	DP1063-9	139.31	55.07			NaN	NaN	NaN	0	0	Median	22128000	0	22128000	1779	573	1698	4154	8576;8577;8578	8578		3	9606
LIPAFEMVMR	0	1	Unmodified	1205.6301	0.63007146	171	Q8TAP4;P25800	LMO3;LMO1	LIM domain only protein 3;Rhombotin-1	yes	no	0	0	0	5	0					1	20.117	20.117	2	0.0078458	13806	DP1063-10	78.77	78.77			7.401	5.338	NaN	1	0	Median	82732000	11157000	71574000	1780	171	1699	4155	8579;8580	8580		2	9606
LIPDGCGVK	1	0	Unmodified	957.49535	0.49535211	177	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	5	0					1	15.51	15.51	2	0.018509	7852	DP1063-10	74.255	43.751			4.9228	2.9204	NaN	1	0	Median	26388000	4355300	22033000	1781	177	1700	4156	8581;8582	8581		2	9606
LIPDSIGKDIEK	2	0	Unmodified	1326.7395	0.73948179	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		17.32	17.32	3	0.018359	9681	DP1063-9	77.74	49.509			NaN	NaN	NaN	0	0	Median	58611000	0	58611000	1782	254	1701	4157	8583;8584	8584		2	9606
LISQIQPEVDRER	0	2	Unmodified	1581.8475	0.84746911	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		2				16.311	16.311	2;3	0.00072583	8046	DP1063-7	128.85	94.415			NaN	NaN	NaN	0	0	Median	83376000	0	83376000	1783	532	1702	4158;4159	8585;8586;8587;8588	8587		4	9606
LISQIVSSITASLR	0	1	Unmodified	1486.8719	0.87189295	310;492	P68363;P68366;Q9H853;Q9BQE3	TUBA1B;TUBA4A;TUBA4B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain	no	no	0	0	0	3	0.655	1		11	2		25.285	25.285	2;3	3.2090000000000004E-56	18562	DP1063-8	254.19	254.19			2.6296	2.7506	12.908	3	0	Median	447260000	114610000	332650000	1784	310;492	1703	4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173	8589;8590;8591;8592;8593;8594;8595;8596;8597;8598;8599;8600;8601;8602;8603;8604;8605;8606;8607;8608;8609;8610;8611;8612	8594		24	9606
LISWYDNEFGYSNR	0	1	Unmodified	1762.7951	0.79509919	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		21.574	21.574	2	5.0057E-23	15407	DP1063-9	205.13	184.82			0.66468	0.69528	NaN	1	0	Median	25651000	16106000	9544300	1785	89	1704	4174	8613;8614;8615;8616	8616		4	9606
LITALGSSEVQPQFTR	0	1	Unmodified	1745.9312	0.93119874	557	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	2	0		1				19.642	19.642	2	3.1292E-09	12658	DP1063-7	167.2	123			NaN	NaN	NaN	0	0	Median	10383000	0	10383000	1786	557	1705	4175	8617;8618	8617		2	9606
LITEDVQGK	1	0	Unmodified	1001.5393	0.53932542	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4.5	0.5				1	1	15.284	15.284	2	0.00046527	6893	DP1063-9	122.74	64.138			8.0533	8.2774	NaN	1	0	Median	109230000	12814000	96417000	1787	254	1706	4176;4177	8619;8620;8621;8622	8621		4	9606
LITGLGVGR	0	1	Unmodified	884.54435	0.54435122	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				17.702	17.702	2	0.0091712	9939	DP1063-7	111.01	32.392			NaN	NaN	NaN	0	0	Median	54093000	0	54093000	1788	493	1707	4178	8623;8624	8623		2	9606
LITQTFSHHNQLAQK	1	0	Unmodified	1764.9271	0.92711641	565	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		15.038	15.038	3	0.00084565	6634	DP1063-9	104.17	104.17			2.4282	2.4958	NaN	1	0	Median	19182000	5842000	13340000	1789	565	1708	4179	8625;8626	8626		2	9606
LITYGSDR	0	1	Unmodified	923.47125	0.47124585	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0		1				15.349	15.349	2	2.087E-07	6733	DP1063-7	153.73	101.09			1.0805	1.081	NaN	1	0	Median	239760000	120740000	119010000	1790	94	1709	4180	8627;8628;8629;8630	8629		4	9606
LITYGSDRTEALK	1	1	Unmodified	1465.7777	0.77765821	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2	0		1				16.009	16.009	3	0.0054509	7700	DP1063-7	66.326	44.251			0.96773	1.0133	NaN	1	0	Median	17337000	6996800	10340000	1791	94	1710	4181	8631	8631		1	9606
LITYGSDRTEALKR	1	2	Unmodified	1621.8788	0.87876924	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	2	0		2				15.139	15.139	3;4	0.0067961	6481	DP1063-7	60.301	60.301			1.058	1.1047	14.61	2	0	Median	111610000	58795000	52814000	1792	94	1711	4182;4183	8632;8633;8634;8635	8632		4	9606
LKECCDKPLLEK	3	0	Unmodified	1531.7738	0.77383516	12	CON__P02769			yes	yes	0	0	2	2.22	1.03	3	2	3	1		14.083	14.083	2;3;4	9.4616E-08	5508	DP1063-8	205.46	125.98		+	NaN	NaN	NaN	0	0	Median	1110000000	1110000000	0	1793	12	1712	4184;4185;4186;4187;4188;4189;4190;4191;4192	8636;8637;8638;8639;8640;8641;8642;8643;8644;8645;8646;8647;8648;8649;8650;8651;8652;8653	8649		18	
LKEIVTNFLAGFEA	1	0	Unmodified	1550.8344	0.83444481	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			23.785	23.785	2	0.037264	18020	DP1063-8	70.54	57.106			1.0961	1.1039	NaN	1	0	Median	13780000	6823800	6955900	1794	170	1713	4193	8654	8654		1	9606
LKEREEFLIPIYHQVAVQFADLHDTPGR	1	2	Unmodified	3320.7306	0.73059544	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1.5	0.5	1	1				21.407	21.407	5	6.8529E-10	13080	DP1063-6	96.44	96.44			0.80356	0.89188	18.792	2	0	Median	83911000	43797000	40114000	1795	355	1714	4194;4195	8655;8656;8657;8658;8659	8656		5	9606
LKEVFSMAGVVVR	1	1	Oxidation (M)	1449.8014	0.80137054	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	1	2	0		1				17.465	17.465	3	0.0011667	9627	DP1063-7	76.588	57.092			1.328	1.3905	NaN	1	0	Median	52264000	19798000	32467000	1796	236	1715	4196	8660;8661;8662;8663	8660	271	4	9606
LKGDDLQAIKK	3	0	Unmodified	1227.7187	0.71868677	111	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	2	4	0				1		13.901	13.901	3	0.0067327	5139	DP1063-9	77.062	38.28			3.051	3.2411	NaN	1	0	Median	35018000	9863300	25155000	1797	111	1716	4197	8664	8664		1	9606
LKHGDVITIIDR	1	1	Unmodified	1378.7932	0.79324869	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	1.5	1			1		16.561	16.561	3	0.02899	6849	DP1063-6	71.268	40.12			NaN	NaN	NaN	0	0	Median	26163000	0	26163000	1798	211	1717	4198;4199	8665;8666	8665		2	9606
LKHLVDEPQNLIK	2	0	Unmodified	1545.8879	0.88787736	12	CON__P02769			yes	yes	0	0	1	2.29	1.03	2	2	2	1		16.471	16.471	2;3	1.786E-24	8591	DP1063-8	238.07	160.33		+	NaN	NaN	NaN	0	0	Median	974480000	974480000	0	1799	12	1718	4200;4201;4202;4203;4204;4205;4206	8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678;8679;8680	8675		14	
LKLAVEEFVHATSEGEAPGGCEGR	1	1	Unmodified	2542.2122	0.21220098	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0		2				19.256	19.256	2;4	1.7084E-20	12121	DP1063-7	172.56	136.9			NaN	NaN	NaN	0	0	Median	45557000	0	45557000	1800	418	1719	4207;4208	8681;8682;8683	8681		3	9606
LKLEPHEGLLLR	1	1	Unmodified	1416.8453	0.84528426	112	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	2	0		1				17.489	17.489	3	0.024034	9687	DP1063-7	56.205	56.205			1.3763	1.4412	NaN	1	0	Median	36156000	14345000	21811000	1801	112	1720	4209	8684;8685	8684		2	9606
LKPDPNTLCDEFK	2	0	Unmodified	1575.7603	0.76029359	12	CON__P02769			yes	yes	0	0	1	2.57	1.18	2	1	2	2		17.875	17.875	2;3	4.1459E-11	10204	DP1063-8	184.98	154.67		+	NaN	NaN	NaN	0	0	Median	1742299999.9999998	1742299999.9999998	0	1802	12	1721	4210;4211;4212;4213;4214;4215;4216	8686;8687;8688;8689;8690;8691;8692;8693;8694;8695;8696;8697;8698;8699	8693		14	
LKPDPNTLCDEFKADEK	3	0	Unmodified	2018.9619	0.96190652	12	CON__P02769			yes	yes	0	0	2	2.88	0.471		3	13	1		25.956	25.956	2;3;4	2.5805999999999997E-21	9686	DP1063-7	188.09	136.48		+	NaN	NaN	NaN	0	0	Median	850830000	850830000	0	1803	12	1722	4217;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232;4233	8700;8701;8702;8703;8704;8705;8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725;8726;8727;8728	8704		29	
LKVPPAINQFTQALDR	1	1	Unmodified	1810.0101	0.010117761	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		21.046	21.046	2	0.00024504	14690	DP1063-9	141.34	107.16			NaN	NaN	NaN	0	0	Median	34032000	0	34032000	1804	280	1723	4234	8729;8730	8729		2	9606
LKYENEVALR	1	1	Unmodified	1233.6717	0.67173657	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2	1	2		2			16.056	16.056	2;3	0.00057493	6207	DP1063-6	140.49	107.96		+	NaN	NaN	NaN	0	0	Median	66218000	66218000	0	1805	16	1724	4235;4236;4237;4238	8731;8732;8733;8734;8735	8731		5	9606
LLACIASR	0	1	Unmodified	902.50077	0.50077184	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	16.701	16.701	2	2.0741E-09	9484	DP1063-10	155.51	63.604			11.614	8.3767	NaN	1	0	Median	64235000	6700400	57534000	1806	267	1725	4239	8736;8737	8737		2	9606
LLACIASRPGQCGR	0	2	Unmodified	1557.7868	0.78679988	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	15.828	15.828	3	0.019066	8297	DP1063-10	55.776	24.548			11.348	11.517	NaN	1	0	Median	45064000	5852900	39212000	1807	267	1726	4240	8738;8739;8740	8739		3	9606
LLADQAEAR	0	1	Unmodified	985.51926	0.51925868	324	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	4.5	0.5				1	1	14.727	14.727	2	0.0002519	6944	DP1063-10	129.47	49.997			12.045	8.6878	NaN	1	0	Median	166750000	11024000	155720000	1808	324	1727	4241;4242	8741;8742;8743;8744;8745;8746	8742		6	9606
LLALNSLYSPK	1	0	Unmodified	1217.702	0.70197407	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.425	20.425	2	0.027803	11854	DP1063-6	88.681	32.134			NaN	NaN	NaN	0	0	Median	10348000	0	10348000	1809	318	1728	4243	8747;8748	8748		2	9606
LLCGLLAER	0	1	Unmodified	1043.5798	0.57975045	139	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	5	0					1	19.796	19.796	2	0.00066728	13409	DP1063-10	118.74	51.75			0.58522	0.42209	NaN	1	0	Median	32459000	18438000	14021000	1810	139	1729	4244	8749;8750;8751;8752	8749		4	9606
LLDAVDTYIPVPAR	0	1	Unmodified	1541.8453	0.84534384	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		21.44	21.44	2	0.00033782	15244	DP1063-9	147.74	101.14			1.6338	1.709	NaN	1	0	Median	8795400	3137000	5658300	1811	226	1730	4245	8753	8753		1	9606
LLDFGSLSNLQVTQPTVGMNFK	1	0	Oxidation (M)	2424.2359	0.23589654	115	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	5	0					1	22.999	22.999	2	2.5105E-18	17399	DP1063-10	179.65	148.74			NaN	NaN	NaN	0	0	Median	7604600	0	7604600	1812	115	1731	4246	8754;8755	8755	129	2	9606
LLEAISSLDGK	1	0	Unmodified	1144.634	0.63395409	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				19.508	19.508	2	0.027803	12459	DP1063-7	88.681	40.398			NaN	NaN	NaN	0	0	Median	9993000	0	9993000	1813	504	1732	4247	8756	8756		1	9606
LLEEALLR	0	1	Unmodified	955.57023	0.57023162	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.472	19.472	2	0.0016746	10570	DP1063-6	132.09	24.664			NaN	NaN	NaN	0	0	Median	10398000	0	10398000	1814	318	1733	4248	8757;8758	8757		2	9606
LLEGEECR	0	1	Unmodified	1004.4597	0.45969489	20;17;26;14	P35908;CON__P35908v2;CON__P35908;CON__O95678;O95678;Q01546;CON__Q6NXH9;CON__Q01546;Q86Y46;CON__Q7RTS7;Q7RTS7;CON__Q32MB2;CON__Q7RTT2;CON__Q8N1N4-2;Q8N1N4;P12036;CON__Q3TTY5;CON__P13647;P13647;CON__P07744	KRT2;KRT75;KRT76;KRT73;KRT74;KRT78;NEFH;KRT5	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 78;Neurofilament heavy polypeptide;Keratin, type II cytoskeletal 5	no	no	0	0	0	2	1	1		1			14.661	14.661	2	0.0017733	4538	DP1063-6	131.04	88.037		+	NaN	NaN	NaN	0	0	Median	22158000	22158000	0	1815	20;26;17;14	1734	4249;4250	8759;8760;8761;8762	8759		4	9606
LLEGEESR	0	1	Unmodified	931.46108	0.4610751	13;114	CON__P05787;P05787;CON__Q9DCV7;CON__Q3KNV1;CON__P08729;CON__Q9H552;CON__Q9NSB2;CON__Q6ISB0;P08729;Q9NSB2;P41219;P17661;P08670	KRT8;KRT7;KRT84;PRPH;DES;VIM	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Peripherin;Desmin;Vimentin	no	no	0	0	0	3	0			1			14.257	14.257	2	0.046714	5844	DP1063-8	87.323	45.214		+	NaN	NaN	NaN	0	0	Median	8366600	0	8366600	1816	13;114	1735	4251	8763	8763		1	9606
LLEQQELR	0	1	Unmodified	1027.5662	0.56620887	497	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					16.205	16.205	2	0.0087801	6429	DP1063-6	110.81	35.595			NaN	NaN	NaN	0	0	Median	20493000	0	20493000	1817	497	1736	4252	8764;8765	8765		2	9606
LLEQYKEESK	2	0	Unmodified	1265.6503	0.65033243	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				14.579	14.579	2	0.013996	5746	DP1063-7	143.7	63.718			NaN	NaN	NaN	0	0	Median	9306000	0	9306000	1818	330	1737	4253	8766;8767	8767		2	9606
LLESLDQLELR	0	1	Unmodified	1327.7347	0.73473076	83	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	21.436	21.436	2	5.1781E-06	15544	DP1063-10	150.27	35.754			3.4211	2.4675	NaN	1	0	Median	12991000	2173000	10818000	1819	83	1738	4254	8768;8769	8768		2	9606
LLETESFQMNR	0	1	Oxidation (M)	1382.65	0.65001485	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				17.209	17.209	2	9.1703E-11	7597	DP1063-6	171.99	146.43			1.0502	1.0549	5.7359	2	0	Median	793330000	400410000	392920000	1820	355	1739	4255;4256;4257	8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780	8774	428	11	9606
LLETESFQMNR	0	1	Unmodified	1366.6551	0.65510023	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.605	18.605	2	9.4801E-23	9383	DP1063-6	200.86	165.71			0.94306	0.95555	NaN	1	0	Median	155940000	80595000	75344000	1821	355	1739	4258	8781;8782	8782		2	9606
LLETYLILVK	1	0	Unmodified	1203.7479	0.74786163	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					22.506	22.506	2	0.031422	14488	DP1063-6	87.696	28.914			NaN	NaN	NaN	0	0	Median	4354000	0	4354000	1822	73	1740	4259	8783;8784	8783		2	9606
LLEVQGSRPGK	1	1	Unmodified	1182.6721	0.67207093	264	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4	0				1		14.324	14.324	3	0.0033258	5721	DP1063-9	110.54	61.19			NaN	NaN	NaN	0	0	Median	5709600	0	5709600	1823	264	1741	4260	8785;8786	8786		2	9606
LLGAALPLLTK	1	0	Unmodified	1108.722	0.72198123	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.704	21.704	2	0.009778	15406	DP1063-7	109.66	87.704			NaN	NaN	NaN	0	0	Median	16881000	0	16881000	1824	493	1742	4261	8787;8788	8787		2	9606
LLGGHNEDLPSNR	0	1	Unmodified	1420.7059	0.70589025	494	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	2	0		2				15.176	15.176	2;3	0.001714	6548	DP1063-7	113.07	70.973			NaN	NaN	NaN	0	0	Median	38468000	0	38468000	1825	494	1743	4262;4263	8789;8790;8791	8790		3	9606
LLGLGSASGSVGR	0	1	Unmodified	1172.6513	0.65133548	499	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	4	0				1		18.335	18.335	2	0.015184	11119	DP1063-9	94.363	38.859			NaN	NaN	NaN	0	0	Median	9769100	0	9769100	1826	499	1744	4264	8792	8792		1	9606
LLGQFTLIGIPPAPR	0	1	Unmodified	1591.945	0.94499831	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			22.963	22.963	2	8.5934E-16	16994	DP1063-7	184.24	184.24			1.6688	1.7308	9.8186	2	0	Median	35120000	12267000	22853000	1827	198	1745	4265;4266	8793;8794;8795;8796	8794		3	9606
LLHYLGHVMVNGPTTPIPVK	1	0	Oxidation (M)	2201.2031	0.20308026	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		3				18.193	18.193	2;3;4	1.7547E-30	10628	DP1063-7	200.76	200.76			0.75574	0.77874	5.8191	3	0	Median	383210000	213830000	169380000	1828	130	1746	4267;4268;4269	8797;8798;8799;8800;8801;8802;8803;8804;8805;8806;8807;8808	8806	162	12	9606
LLHYLGHVMVNGPTTPIPVK	1	0	Unmodified	2185.2082	0.20816564	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				18.797	18.797	3	6.74E-08	11473	DP1063-7	150.28	150.28			0.7669	0.79024	NaN	1	0	Median	40209000	22560000	17649000	1829	130	1746	4270	8809;8810	8810		2	9606
LLILALER	0	1	Unmodified	939.6117	0.6117025	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					21.252	21.252	2	0.011078	12825	DP1063-6	83.265	50.424			4.9112	5.1511	NaN	1	0	Median	8455600	1194100	7261400	1830	431	1747	4271	8811;8812	8811		2	9606
LLLEAMDELEVAFNNTNVR	0	1	Oxidation (M)	2206.094	0.093983325	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				23.091	23.091	2	4.122E-23	15136	DP1063-6	185.66	138.78			0.97139	1.0152	NaN	1	0	Median	20256000	8921700	11334000	1831	355	1748	4272;4273;4274	8813;8814;8815;8816;8817;8818;8819	8818	429	7	9606
LLLEDLVK	1	0	Unmodified	941.57973	0.57973367	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1.2	1	1	3	1	1	21.53	21.53	2	6.4944E-07	15187	DP1063-8	175.75	90.394			1.1025	1.1346	1.7672	2	0	Median	338790000	270230000	68553000	1832	355	1749	4275;4276;4277;4278;4279;4280;4281	8820;8821;8822;8823;8824;8825;8826;8827;8828;8829;8830;8831;8832;8833;8834	8829		15	9606
LLLEDLVKK	2	0	Unmodified	1069.6747	0.67469669	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.5	19.5	2	0.00072664	10572	DP1063-6	98.458	98.458			1.0413	1.0596	NaN	1	0	Median	30300000	12202000	18097000	1833	355	1750	4282	8835;8836;8837	8835		3	9606
LLLEEIYR	0	1	Unmodified	1047.5964	0.59644637	568	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		20.712	20.712	2	0.0010887	14274	DP1063-9	138.37	75.65			NaN	NaN	NaN	0	0	Median	15575000	0	15575000	1834	568	1751	4283	8838;8839	8838		2	9606
LLLGAGAVAYGVR	0	1	Unmodified	1258.7398	0.73975656	485	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		20.067	20.067	2	0.00047123	13435	DP1063-9	133.57	100.31			1.2007	1.256	NaN	1	0	Median	19086000	8485600	10601000	1835	485	1752	4284	8840;8841;8842;8843	8840		4	9606
LLLPGELAK	1	0	Unmodified	952.59572	0.59571809	61;106	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;A0A2R8Y619;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					2	19.358	19.358	1;2	0.00089269	12763	DP1063-10	114.28	40.306			3.0046	1.7824	0.23405	2	0	Median	849500000	220550000	628950000	1836	61;106	1753	4285;4286	8844;8845;8846;8847;8848;8849;8850;8851;8852;8853	8844		9	9606
LLLPGELAKHAVSEGTK	2	0	Unmodified	1761.9989	0.99888437	61;106	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;A0A2R8Y619;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	1	5	0					1	18.032	18.032	3	0.038726	11062	DP1063-10	66.809	25.718			NaN	NaN	NaN	0	0	Median	6615600	0	6615600	1837	61;106	1754	4287	8854	8854		1	9606
LLLPVAEYFSGVQLPPHLSPFVTEKEGDYVPPEK	2	0	Unmodified	3794.9811	0.98111563	33	O00541	PES1	Pescadillo homolog	yes	yes	0	0	1	3	0			1			23.682	23.682	4	0.047954	17899	DP1063-8	33.293	15.191			NaN	NaN	NaN	0	0	Median	5409900	0	5409900	1838	33	1755	4288	8855	8855		1	9606
LLLQVQHASK	1	0	Unmodified	1135.6713	0.67134264	93;133;132	P05141;P12236;P12235	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	3.25	1.3	1			3		15.502	15.502	2;3	3.1329E-07	7187	DP1063-9	140.14	140.14			2.4409	2.4993	9.2395	2	0	Median	70697000	19793000	50903000	1839	93;133;132	1756	4289;4290;4291;4292	8856;8857;8858;8859;8860;8861;8862;8863	8859		8	9606
LLMMAGIDDCYTSAR	0	1	2 Oxidation (M)	1747.7579	0.7579271	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	0	4	0				2		17.844	17.844	2	0.0001622	10352	DP1063-9	132.17	109.25			NaN	NaN	NaN	0	0	Median	8570900	8570900	0	1840	141	1757	4293;4294	8864;8865;8866	8866	174;175	3	9606
LLNCQEFAVDLEHHSYR	0	1	Unmodified	2129.9953	0.99527233	333	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				19.088	19.088	4	0.00087365	11856	DP1063-7	112.34	79.421			NaN	NaN	NaN	0	0	Median	20142000	0	20142000	1841	333	1758	4295	8867	8867		1	9606
LLNVWQVR	0	1	Unmodified	1026.5974	0.59744942	395	Q15061	WDR43	WD repeat-containing protein 43	yes	yes	0	0	0	2	0		1				20.204	20.204	2	0.002221	13384	DP1063-7	126.24	59.892			NaN	NaN	NaN	0	0	Median	6924400	0	6924400	1842	395	1759	4296	8868;8869	8869		2	9606
LLQAETASNSAR	0	1	Unmodified	1259.647	0.64697839	388	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					14.605	14.605	2	0.0038487	4440	DP1063-6	125.97	62.153			NaN	NaN	NaN	0	0	Median	3843200	0	3843200	1843	388	1760	4297	8870;8871	8871		2	9606
LLQDFFNGR	0	1	Unmodified	1108.5665	0.56654322	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.5	0.5			1	1		20.797	20.797	2	2.3491E-25	14204	DP1063-8	204.65	171.65			5.9144	6.1575	43.025	2	0	Median	152020000	28031000	123990000	1844	124	1761	4298;4299	8872;8873;8874;8875;8876	8873		5	9606
LLQDLQLGDEEDAR	0	1	Unmodified	1613.7897	0.78967946	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	0		1				19.557	19.557	2	2.2949E-11	12492	DP1063-7	187.78	136.51			NaN	NaN	NaN	0	0	Median	17606000	0	17606000	1845	383	1762	4300	8877;8878	8877		2	9606
LLQIIER	0	1	Unmodified	883.5491	0.54910224	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.404	18.404	2	0.0026671	9188	DP1063-6	121.29	6.7528			NaN	NaN	NaN	0	0	Median	6754800	0	6754800	1846	318	1763	4301	8879	8879		1	9606
LLQVVEEPQALAAFLR	0	1	Unmodified	1796.0196	0.019619815	491	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	3.5	0.5			1	1		24.152	24.152	2	4.0058E-20	18444	DP1063-8	203.61	150.89			NaN	NaN	NaN	0	0	Median	14540000	0	14540000	1847	491	1764	4302;4303	8880;8881;8882;8883	8880		4	9606
LLSFMAPIDHTTMNDDAR	0	1	2 Oxidation (M)	2078.9401	0.94012522	543	Q9NY61	AATF	Protein AATF	yes	yes	0	2	0	2	0		1				18.425	18.425	3	0.024112	10951	DP1063-7	74.141	45.561			NaN	NaN	NaN	0	0	Median	0	0	0	1848	543	1765	4304	8884	8884	619;620	1	9606
LLSISGKR	1	1	Unmodified	872.54435	0.54435122	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		14.474	14.474	2	0.011627	5867	DP1063-9	115.46	72.545			NaN	NaN	NaN	0	0	Median	16772000	0	16772000	1849	105	1766	4305	8885;8886	8885		2	9606
LLSITVR	0	1	Unmodified	800.51199	0.51198846	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.06	18.06	2	0.027786	8738	DP1063-6	100.07	17.804			NaN	NaN	NaN	0	0	Median	7207000	0	7207000	1850	318	1767	4306	8887;8888	8887		2	9606
LLSSFDFFLTDAR	0	1	Unmodified	1530.7718	0.77184455	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			24.351	24.351	2	8.9288E-19	18702	DP1063-8	228.64	182.64			NaN	NaN	NaN	0	0	Median	61474000	0	61474000	1851	75	1768	4307	8889;8890	8890		2	9606
LLSTCGLVQSVELQEKPDLAESPK	2	0	Unmodified	2640.368	0.36803292	574	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	1	4	0				1		20.494	20.494	3	1.7686E-08	14004	DP1063-9	138.46	103.64			NaN	NaN	NaN	0	0	Median	9352600	0	9352600	1852	574	1769	4308	8891;8892;8893	8891		3	9606
LLTSFLPAQLLR	0	1	Unmodified	1370.8286	0.82857157	112	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2.5	0.5		1	1			23.616	23.616	2	5.7896E-07	17862	DP1063-7	164.96	116.67			1.6245	1.6832	10.232	2	0	Median	31634000	11818000	19815000	1853	112	1770	4309;4310	8894;8895;8896;8897;8898;8899;8900	8896		7	9606
LLVTDMSDAEQYR	0	1	Oxidation (M)	1555.7188	0.7188227	42	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	1	0	4	0				1		17.436	17.436	2	0.015079	9923	DP1063-9	100.88	66.5			NaN	NaN	NaN	0	0	Median	9556700	0	9556700	1854	42	1771	4311	8901;8902	8902	41	2	9606
LLYAFAEATVPK	1	0	Unmodified	1321.7282	0.72818882	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.676	20.676	2	0.00066014	14264	DP1063-9	94.297	70.774			0.95582	0.9725	1.6695	2	0	Median	259160000	131530000	127630000	1855	95	1772	4312;4313	8903;8904;8905;8906;8907;8908;8909;8910	8910		8	9606
LMELHGEGSSSGK	1	0	Oxidation (M)	1346.6136	0.61362935	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				2		12.931	12.931	2;3	0.0002477	3944	DP1063-9	101.39	81.183			8.1692	8.3965	NaN	1	0	Median	63559000	6754900	56804000	1856	254	1773	4314;4315	8911;8912;8913	8912	312	3	9606
LMELHGEGSSSGK	1	0	Unmodified	1330.6187	0.61871473	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		14.302	14.302	3	0.0065873	5647	DP1063-9	94.402	70.648			NaN	NaN	NaN	0	0	Median	11055000	0	11055000	1857	254	1773	4316	8914;8915	8915		2	9606
LMQQLQDLEECR	0	1	Oxidation (M)	1577.7178	0.71777684	464	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	1	0	3	0			1			21.535	21.535	2	0.014256	15139	DP1063-8	63.426	44.47			0.96588	1.0008	NaN	1	0	Median	49683000	27168000	22515000	1858	464	1774	4317	8916	8916	544	1	9606
LMQQLQDLEECR	0	1	Unmodified	1561.7229	0.72286222	464	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	0	0	3	0			1			21.699	21.699	2	0.0021845	15445	DP1063-8	85.676	53.356			0.91985	0.95312	NaN	1	0	Median	25188000	14603000	10586000	1859	464	1774	4318	8917;8918	8918		2	9606
LMTQAQLEEATR	0	1	Oxidation (M)	1405.6871	0.68712864	320	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	1	0	4	0				1		16.09	16.09	2	0.041225	8083	DP1063-9	85.963	51.161			NaN	NaN	NaN	0	0	Median	6945200	0	6945200	1860	320	1775	4319	8919	8919		1	9606
LNDLEDALQQAKEDLAR	1	1	Unmodified	1940.9803	0.98033378	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3	0			1			22.067	22.067	3	1.8405E-23	15869	DP1063-8	195.23	124.2		+	NaN	NaN	NaN	0	0	Median	9223800	9223800	0	1861	88	1776	4320	8920	8920		1	9606
LNEAQPSTIATSMR	0	1	Oxidation (M)	1533.7457	0.74570615	248	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	1	0	5	0					1	15.469	15.469	2	0.010354	7870	DP1063-10	103.21	57.212			NaN	NaN	NaN	0	0	Median	5124400	0	5124400	1862	248	1777	4321	8921	8921	303	1	9606
LNIDSIIQR	0	1	Unmodified	1070.6084	0.60840804	194	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3.5	0.5			1	1		19.991	19.991	2	0.0068882	13312	DP1063-9	119.41	64.857			NaN	NaN	NaN	0	0	Median	31274000	0	31274000	1863	194	1778	4322;4323	8922;8923;8924;8925	8924		4	9606
LNIPVSQVNPR	0	1	Unmodified	1235.6986	0.69862003	92	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	yes	no	0	0	0	2	0		1				17.667	17.667	2	0.027803	9930	DP1063-7	88.681	40.257			NaN	NaN	NaN	0	0	Median	7745800	0	7745800	1864	92	1779	4324	8926	8926		1	9606
LNISYTR	0	1	Unmodified	865.46577	0.46576654	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.287	16.287	2	0.0013626	8361	DP1063-9	124.37	83.071			1.0186	1.0605	26.674	2	0	Median	70158000	34208000	35949000	1865	483	1780	4325;4326	8927;8928;8929;8930;8931;8932;8933;8934	8931		8	9606
LNNLVLFDK	1	0	Unmodified	1074.6073	0.6073454	290	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	20.02	20.02	2	0.001053	13698	DP1063-10	106.6	52.442			7.6474	4.5367	NaN	1	0	Median	11950000	1448200	10501000	1866	290	1781	4327	8935	8935		1	9606
LNQYFQK	1	0	Unmodified	939.48142	0.48141661	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				15.832	15.832	2	0.033399	7453	DP1063-7	69.432	9.7914			3.3124	3.4132	NaN	1	0	Median	9639300	2645500	6993800	1867	345	1782	4328	8936	8936		1	9606
LNSMVERQEK	1	1	Oxidation (M)	1248.6132	0.61323542	319	P82094	TMF1	TATA element modulatory factor	yes	yes	0	1	1	3	0			1			29.477	29.477	3	0.022566	26065	DP1063-8	97.965	38.035			NaN	NaN	NaN	0	0	Median	22710000	22710000	0	1868	319	1783	4329	8937;8938	8938	385	2	9606
LNTLLQR	0	1	Unmodified	856.51305	0.51305109	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				16.533	16.533	2	0.005359	8329	DP1063-7	114.54	41.501			NaN	NaN	NaN	0	0	Median	45205000	0	45205000	1869	330	1784	4330	8939;8940	8940		2	9606
LPAAGVGDMVMATVK	1	0	2 Oxidation (M)	1490.7473	0.74728606	287	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					1	17.033	17.033	2	0.00047467	9729	DP1063-10	113.61	113.61			3.7323	2.2141	NaN	1	0	Median	93237000	21024000	72213000	1870	287	1785	4331	8941;8942;8943;8944;8945	8942	341;342	5	9606
LPAAGVGDMVMATVK	1	0	Oxidation (M)	1474.7524	0.75237144	287	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	1	0	5	0					1	18.719	18.719	2	0.015178	11990	DP1063-10	95.094	59.134			NaN	NaN	NaN	0	0	Median	11673000	0	11673000	1871	287	1785	4332	8946;8947	8946	341;342	2	9606
LPAIALDLLR	0	1	Unmodified	1093.6859	0.68593008	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				22.998	22.998	2	0.01678	17084	DP1063-7	97.635	6.5665			NaN	NaN	NaN	0	0	Median	8490400	0	8490400	1872	493	1786	4333	8948;8949	8949		2	9606
LPCIYLVDSGGAYLPR	0	1	Unmodified	1792.9182	0.91819121	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.12	0.439			22	1	1	26.329	26.329	2;3	2.0973000000000002E-33	16044	DP1063-8	206.49	206.49			0.94757	0.98651	18.089	4	0	Median	841660000	425660000	416000000	1873	524	1787	4334;4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357	8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974;8975;8976;8977;8978;8979;8980;8981;8982;8983;8984	8956		35	9606
LPDMLNAEIVLGNVQNAK	1	0	Oxidation (M)	1954.0194	0.019361819	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					21.405	21.405	2	0.012318	13121	DP1063-6	96.756	69.092			NaN	NaN	NaN	0	0	Median	2617200	0	2617200	1874	71	1788	4358	8985;8986	8985	60	2	9606
LPEDPLLSGLLDSPALK	1	0	Unmodified	1776.9873	0.98731663	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					24.402	24.402	2	1.452E-18	16672	DP1063-6	195.72	177.12			1.187	1.2109	NaN	1	0	Median	5386900	2049000	3338000	1875	224	1789	4359	8987;8988;8989;8990	8987		4	9606
LPEIEEYYDGNTSSNSR	0	1	Unmodified	1972.865	0.86502925	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				19.195	19.195	2	9.5463E-10	12029	DP1063-7	162.22	140.92			NaN	NaN	NaN	0	0	Median	9500500	0	9500500	1876	490	1790	4360	8991	8991		1	9606
LPELLLK	1	0	Unmodified	824.53714	0.53714057	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.25	1	1		1		19.826	19.826	2	0.0013654	10972	DP1063-6	123.99	4.7676			0.85268	0.86982	10.081	3	0	Median	489870000	263540000	226330000	1877	355	1791	4361;4362;4363	8992;8993;8994;8995;8996;8997;8998;8999;9000;9001;9002	8993		11	9606
LPEPTTR	0	1	Unmodified	812.43922	0.43921744	392	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		14.125	14.125	2	0.0014387	5414	DP1063-9	124.37	20.263			NaN	NaN	NaN	0	0	Median	17445000	0	17445000	1878	392	1792	4364	9003;9004	9004		2	9606
LPEVQQATK	1	0	Unmodified	1012.5553	0.55530983	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				14.821	14.821	2	0.0035668	6036	DP1063-7	132.76	86.786			NaN	NaN	NaN	0	0	Median	99946000	0	99946000	1879	365	1793	4365;4366	9005;9006;9007;9008	9007		4	9606
LPFTPLSYIQGLSHR	0	1	Unmodified	1727.9359	0.93589019	559	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	0	0	0	5	0					1	22.643	22.643	3	1.3798E-05	16996	DP1063-10	145.49	120.04			NaN	NaN	NaN	0	0	Median	2842100	0	2842100	1880	559	1794	4367	9009;9010	9009		2	9606
LPGGNEIGMVAWK	1	0	Oxidation (M)	1386.6966	0.69657112	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.25	0.433	3	1				22.259	22.259	2	2.0901E-06	10297	DP1063-6	157.68	126.18			0.941	0.96019	6.5649	3	0	Plateau	695830000	357370000	338460000	1881	355	1795	4368;4369;4370;4371	9011;9012;9013;9014;9015;9016;9017;9018;9019;9020	9012	430	9	9606
LPGGNEIGMVAWK	1	0	Unmodified	1370.7017	0.70165649	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				20.446	20.446	2	5.5501E-16	11818	DP1063-6	196.11	196.11			0.83745	0.85859	11.448	2	0	Median	168230000	88659000	79573000	1882	355	1795	4372;4373	9021;9022;9023;9024;9025;9026;9027	9023		7	9606
LPIGNTIQPSQAATFMNDAIEK	1	0	Oxidation (M)	2374.1839	0.18386096	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	1	0	2	0		1				19.836	19.836	2	2.5075E-18	12900	DP1063-7	179.66	118.18			NaN	NaN	NaN	0	0	Median	9670300	0	9670300	1883	54	1796	4374	9028;9029	9028	46	2	9606
LPLISGFYK	1	0	Unmodified	1036.5957	0.59571809	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.082	21.082	2	0.014975	12658	DP1063-6	98.523	58.42			NaN	NaN	NaN	0	0	Median	3786600	0	3786600	1884	318	1797	4375	9030;9031	9030		2	9606
LPLQDVYK	1	0	Unmodified	974.54368	0.54368251	309	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	0				1		17.953	17.953	2	0.0022059	10495	DP1063-9	98.997	38.703			1.1789	1.2117	NaN	1	0	Median	70539000	32217000	38322000	1885	309	1798	4376	9032;9033;9034;9035	9032		4	9606
LPPQSCLLLPPTPVR	0	1	Unmodified	1686.9491	0.94909741	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					20.623	20.623	2	0.0032952	12051	DP1063-6	112.44	89.202			NaN	NaN	NaN	0	0	Median	4606500	0	4606500	1886	73	1799	4377	9036;9037	9037		2	9606
LPRPPPPEMPESLK	1	1	Oxidation (M)	1602.844	0.84396364	326	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	1	4	0				1		16.076	16.076	3	0.011246	7939	DP1063-9	51.771	32.572			0.22475	0.21255	NaN	1	0	Median	59477000	50365000	9112200	1887	326	1800	4378	9038	9038	391	1	9606
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	0	2	Oxidation (M)	3141.4269	0.4268978	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	1	2	0		1				18.114	18.114	3	9.6455E-05	10526	DP1063-7	71.67	55.4			NaN	NaN	NaN	0	0	Median	23798000	0	23798000	1888	330	1801	4379	9039;9040	9040	396	2	9606
LQAEISQAAR	0	1	Unmodified	1085.5829	0.58292157	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	2	0		1				15.129	15.129	2	0.012104	6476	DP1063-7	106.68	47.438			NaN	NaN	NaN	0	0	Median	24513000	0	24513000	1889	54	1802	4380	9041;9042	9041		2	9606
LQELAELEAK	1	0	Unmodified	1142.6183	0.61830402	518	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		18.214	18.214	2	0.0099994	10953	DP1063-9	110.76	27.492			NaN	NaN	NaN	0	0	Median	11598000	0	11598000	1890	518	1803	4381	9043;9044	9044		2	9606
LQETLSAADR	0	1	Unmodified	1102.5619	0.56185177	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.449	15.449	2	1.038E-05	5453	DP1063-6	136.57	56.401			3.5837	3.7393	NaN	1	0	Median	14326000	3070700	11255000	1891	318	1804	4382	9045;9046	9046		2	9606
LQETSSQSYVEEQK	1	0	Unmodified	1654.7686	0.76860967	453	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2	0		1				15.244	15.244	2	1.3363E-12	6618	DP1063-7	199.19	143.72			NaN	NaN	NaN	0	0	Median	11791000	0	11791000	1892	453	1805	4383	9047	9047		1	9606
LQGEIAHVK	1	0	Unmodified	993.56073	0.56072956	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					13.669	13.669	2	0.051621	3243	DP1063-6	80.438	24.316		+	NaN	NaN	NaN	0	0	Median	6814100	6814100	0	1893	20	1806	4384	9048	9048		1	9606
LQGSDLFWR	0	1	Unmodified	1120.5665	0.56654322	435	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	2	0		1				20.654	20.654	2	0.0050139	13957	DP1063-7	126.52	44.738			NaN	NaN	NaN	0	0	Median	8190300	0	8190300	1894	435	1807	4385	9049;9050	9049		2	9606
LQIEESSKPVR	1	1	Unmodified	1284.7038	0.70376498	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		14.5	14.5	2	1.5518E-05	5951	DP1063-9	193.1	93.314			NaN	NaN	NaN	0	0	Median	7695000	0	7695000	1895	138	1808	4386	9051	9051		1	9606
LQLPVWEYKDR	1	1	Unmodified	1445.7667	0.76669959	48	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	2	0		1				19.369	19.369	3	0.035883	12268	DP1063-7	66.663	31.168			NaN	NaN	NaN	0	0	Median	11105000	0	11105000	1896	48	1809	4387	9052	9052		1	9606
LQLSLADFR	0	1	Unmodified	1061.5869	0.58694431	33	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			21.279	21.279	2	0.0027155	14851	DP1063-8	170.24	75.578			NaN	NaN	NaN	0	0	Median	10834000	0	10834000	1897	33	1810	4388	9053;9054	9053		2	9606
LQMEQQQQLQQR	0	1	Oxidation (M)	1572.7678	0.76783858	533	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	0	5	0					1	14.023	14.023	2	0.00043471	6147	DP1063-10	147.75	61.41			NaN	NaN	NaN	0	0	Median	3952900	0	3952900	1898	533	1811	4389	9055;9056	9056	610	2	9606
LQNLDALTNLTVLSMQSNR	0	1	Oxidation (M)	2146.1052	0.10521671	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		22.167	22.167	2	1.859E-10	16149	DP1063-9	164.7	108.13			NaN	NaN	NaN	0	0	Median	17932000	0	17932000	1899	405	1812	4390	9057;9058	9058	502	2	9606
LQNLDALTNLTVLSMQSNR	0	1	Unmodified	2130.1103	0.11030209	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		23.104	23.104	2	1.2422E-23	17343	DP1063-9	193.51	96.642			NaN	NaN	NaN	0	0	Median	2015000	0	2015000	1900	405	1812	4391	9059	9059		1	9606
LQNSYQPTNK	1	0	Unmodified	1191.5884	0.58840088	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				13.733	13.733	2	0.0095993	4600	DP1063-7	111.95	68.312			NaN	NaN	NaN	0	0	Median	15912000	0	15912000	1901	436	1813	4392	9060;9061	9061		2	9606
LQSIGTENTEENRR	0	2	Unmodified	1645.802	0.80197548	87	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	4	0				1		13.965	13.965	3	0.00077243	5214	DP1063-9	80.69	80.69			0.7264	0.73703	NaN	1	0	Median	20033000	11784000	8248700	1902	87	1814	4393	9062;9063;9064;9065;9066	9064		5	9606
LQVEHPCTEMVADVNLPAAQLQIAMGIPLYR	0	1	2 Oxidation (M)	3508.7517	0.75166651	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					22.104	22.104	3	1.4979E-24	13926	DP1063-6	158.74	158.74			0.66475	0.68065	NaN	1	0	Median	66388000	41698000	24690000	1903	355	1815	4394	9067;9068;9069	9067	431;432	3	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Oxidation (M)	2595.3037	0.30365852	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.75	0.829		2	1	1		20.951	20.951	2;3	2.5923E-17	14336	DP1063-7	182.21	182.21			0.96639	0.98282	6.7724	4	0	Median	359830000	182970000	176860000	1904	94	1816	4395;4396;4397;4398	9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091	9072	87	22	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Unmodified	2579.3087	0.3087439	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			23.112	23.112	3	7.7772E-54	17180	DP1063-7	229.98	229.98			1.0162	1.0458	3.608	2	0	Median	101600000	45578000	56026000	1905	94	1816	4399;4400	9092;9093;9094;9095;9096;9097;9098;9099	9094		8	9606
LQVEHPVTEMITGTDLVEWQLR	0	1	Oxidation (M)	2609.3159	0.31593777	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.5	0.764		4	1	1		21.239	21.239	2;3	4.4943E-42	14810	DP1063-7	217.73	217.73			1.0907	1.0833	15.535	4	0	Linear	633310000	304040000	329270000	1906	483	1817	4401;4402;4403;4404;4405;4406	9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115	9107	556	16	9606
LQVEHPVTEMITGTDLVEWQLR	0	1	Unmodified	2593.321	0.32102315	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		2				22.6	22.6	2;3	1.5882E-08	16503	DP1063-7	151.01	151.01			1.1345	1.1655	NaN	1	0	Median	43672000	17874000	25799000	1907	483	1817	4407;4408	9116;9117;9118;9119;9120;9121	9118		6	9606
LQVEHTVTEEITDVDLVHAQIHVAEGR	0	1	Unmodified	3037.5469	0.546877	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.25	0.433		3	1			20.062	20.062	3;4;5	7.1208E-114	13203	DP1063-7	273.84	273.84			1.2284	1.2118	15.985	4	0	Linear	798530000	358640000	439890000	1908	130	1818	4409;4410;4411;4412	9122;9123;9124;9125;9126;9127;9128;9129;9130;9131;9132;9133;9134;9135	9130		13	9606
LQWDLGLGHLPR	0	1	Unmodified	1403.7674	0.76736829	420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				20.964	20.964	3	0.043029	14463	DP1063-7	67.214	44.886			NaN	NaN	NaN	0	0	Median	8273600	0	8273600	1909	420	1819	4413	9136	9136		1	9606
LREAGLVAQHPPAR	0	2	Unmodified	1513.8477	0.84774388	495	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	1	5	0					1	14.229	14.229	3	0.037028	6422	DP1063-10	67.964	38.988			NaN	NaN	NaN	0	0	Median	2786400	0	2786400	1910	495	1820	4414	9137	9137		1	9606
LRECLPLIIFLR	0	2	Unmodified	1541.9116	0.91158969	281	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	1	4	0				1		22.921	22.921	3	4.2846E-05	17099	DP1063-9	134.56	134.56			5.2011	5.2772	NaN	1	0	Median	18108000	2595500	15512000	1911	281	1821	4415	9138;9139	9139		2	9606
LREDLER	0	2	Unmodified	929.49304	0.49304393	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					1	13.567	13.567	2	8.644E-05	5558	DP1063-10	144.38	36.946			3.3898	3.4405	NaN	1	0	Median	51846000	11150000	40695000	1912	273	1822	4416	9140;9141	9140		2	9606
LRELGPDGEEAEGPGAGDGPPR	0	2	Unmodified	2175.0192	0.019238477	153	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	1	4	0				1		16.169	16.169	3	0.050815	8230	DP1063-9	57.768	28.566			NaN	NaN	NaN	0	0	Median	9224200	0	9224200	1913	153	1823	4417	9142	9142		1	9606
LRETEILFHSSLLR	0	2	Unmodified	1712.9574	0.95735391	520	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	2	0		1				19.166	19.166	3	0.046704	11992	DP1063-7	64.842	41.851			NaN	NaN	NaN	0	0	Median	8024000	0	8024000	1914	520	1824	4418	9143	9143		1	9606
LRPNLEFMLAQLNYEHETGR	0	2	Oxidation (M)	2446.2063	0.20632774	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	1	1	0	1					19.5	19.5	3	0.050375	10559	DP1063-6	78.418	51.45			NaN	NaN	NaN	0	0	Median	7118200	0	7118200	1915	73	1825	4419	9144	9144		1	9606
LSCQPMLSLDDFQLQPPVTFR	0	1	Oxidation (M)	2507.2189	0.21886626	70	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	1	0	5	0					1	23.545	23.545	2	0.00015255	17989	DP1063-10	125.39	97.621			NaN	NaN	NaN	0	0	Median	4514400	0	4514400	1916	70	1826	4420	9145;9146;9147;9148	9145	57	4	9606
LSDGGLLLSYDGSSYTTYMK	1	0	Oxidation (M)	2186.0089	0.0089162914	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.123	21.123	2	2.6383E-15	12709	DP1063-6	173.44	154.61			1.0068	1.0271	NaN	1	0	Median	43201000	18943000	24258000	1917	355	1827	4421	9149;9150;9151;9152	9152	433	4	9606
LSDGGLLLSYDGSSYTTYMK	1	0	Unmodified	2170.014	0.014001669	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					22.135	22.135	2	6.0976E-16	14023	DP1063-6	160.46	104.1			NaN	NaN	NaN	0	0	Median	5307300	0	5307300	1918	355	1827	4422;4423	9153;9154	9154		2	9606
LSDGGLLLSYDGSSYTTYMKEEVDR	1	1	Oxidation (M)	2814.2906	0.29057046	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					20.356	20.356	2;3	1.8148E-16	11770	DP1063-6	165.9	143.26			0.98938	1.0448	NaN	1	0	Median	98959000	54159000	44800000	1919	355	1828	4424;4425	9155;9156;9157;9158	9156	433	4	9606
LSDGGLLLSYDGSSYTTYMKEEVDRYR	1	2	Oxidation (M)	3133.455	0.45501003	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	2	1	0	2					20.017	20.017	3;4	3.2089E-06	11297	DP1063-6	81.379	70.928			0.84022	0.99125	1.0833	2	0	Median	45518000	24158000	21360000	1920	355	1829	4426;4427	9159;9160	9160	433	2	9606
LSEPNMASISGQLEELYMAHSR	0	1	2 Oxidation (M)	2494.1468	0.14682353	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	2	0	2.4	1.02	1	2	1	1		20.865	20.865	2;3	2.4939E-07	14207	DP1063-7	131.86	131.86			52.211	51.86	NaN	1	0	Median	504270000	11089000	493180000	1921	418	1830	4428;4429;4430;4431;4432	9161;9162;9163;9164;9165;9166;9167;9168;9169	9164	518;519	9	9606
LSEPNMASISGQLEELYMAHSR	0	1	Oxidation (M)	2478.1519	0.15190891	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2.2	0.4		4	1			21.937	21.937	2;3	3.9714999999999994E-19	14814	DP1063-7	179.78	158.08			NaN	NaN	NaN	0	0	Median	175260000	0	175260000	1922	418	1830	4433;4434;4435;4436;4437	9170;9171;9172;9173;9174;9175;9176;9177;9178	9171	518;519	9	9606
LSKEEIER	1	1	Unmodified	1002.5346	0.53457439	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3	0			2			13.297	13.297	2;3	3.3416E-09	4537	DP1063-8	163.15	104.34			4.6311	4.6565	NaN	1	0	Median	187780000	33743000	154040000	1923	124	1831	4438;4439	9179;9180;9181;9182;9183;9184	9179		6	9606
LSLDDLLQR	0	1	Unmodified	1071.5924	0.59242362	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					22.129	22.129	2	0.0024121	13987	DP1063-6	145.34	29.091			NaN	NaN	NaN	0	0	Median	5360600	0	5360600	1924	179	1832	4440	9185;9186	9185		2	9606
LSLEGIVVQR	0	1	Unmodified	1112.6554	0.65535823	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		20.081	20.081	2	0.0094187	13478	DP1063-9	112.84	39.177			NaN	NaN	NaN	0	0	Median	8985200	0	8985200	1925	138	1833	4441	9187	9187		1	9606
LSLQEYTNSMK	1	0	Oxidation (M)	1328.6282	0.62821678	592				yes	yes	0	1	0	3	0			1			25.132	25.132	2	0.027972	19631	DP1063-8	59.153	35.799	+		1.0611	1.0687	NaN	1	0	Median	2525200	1204900	1320300	1926	592	1834	4442	9188	9188	645	1	9606
LSNIFVIGK	1	0	Unmodified	989.59097	0.59096706	281	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		20.094	20.094	2	2.0868E-06	13470	DP1063-9	144.38	107.98			4.9828	5.1215	NaN	1	0	Median	55799000	9142300	46657000	1927	281	1835	4443	9189;9190	9190		2	9606
LSNVNLQEK	1	0	Unmodified	1043.5611	0.56112349	579	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				15.027	15.027	2	0.014948	6362	DP1063-7	98.582	24.327			NaN	NaN	NaN	0	0	Median	7896700	0	7896700	1928	579	1836	4444	9191	9191		1	9606
LSPVLDGVSELR	0	1	Unmodified	1283.7085	0.70851601	410	Q16650	TBR1	T-box brain protein 1	yes	yes	0	0	0	1	0	1					24.372	24.372	2	0.0045478	16806	DP1063-6	78.264	11.994			2.181	2.2856	NaN	1	0	Median	10068000	3329600	6738200	1929	410	1837	4445	9192	9192		1	9606
LSQILTDFPK	1	0	Unmodified	1160.6441	0.64412484	509	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	2	0		1				19.896	19.896	2	0.016816	13049	DP1063-7	97.565	52.23			NaN	NaN	NaN	0	0	Median	7569600	0	7569600	1930	509	1838	4446	9193	9193		1	9606
LSQKFPKAEFVEVTK	3	0	Unmodified	1749.9665	0.96652161	12	CON__P02769			yes	yes	0	0	2	3	0			1			16.862	16.862	4	0.0024342	9252	DP1063-8	98.582	65.435		+	NaN	NaN	NaN	0	0	Median	49808000	49808000	0	1931	12	1839	4447	9194;9195	9195		2	
LSQYQEPLHLPGVR	0	1	Unmodified	1635.8733	0.87328993	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.8	0.748		2	2	1		18.614	18.614	2;3	1.6796E-15	11262	DP1063-7	179.67	179.67			0.82852	0.84965	4.8272	5	0	Median	655910000	347220000	308680000	1932	94	1840	4448;4449;4450;4451;4452	9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206;9207;9208	9202		13	9606
LSSEMNTSTVNSAR	0	1	Oxidation (M)	1511.6886	0.68858521	157	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	3	0			1			13.567	13.567	2	0.00084864	4917	DP1063-8	129	129			0.98868	1.0244	NaN	1	0	Median	10311000	4922600	5388100	1933	157	1841	4453	9209;9210	9210	185	2	9606
LSSPATLNSR	0	1	Unmodified	1044.5564	0.55637247	8	CON__P00761			yes	yes	0	0	0	3.5	1.61	1	1	1		3	19.313	19.313	2	0.002791	7959	DP1063-10	137.14	85.942		+	0.36295	0.37399	NaN	1	0	Median	2819900000	2819600000	346300	1934	8	1842	4454;4455;4456;4457;4458;4459	9211;9212;9213;9214;9215;9216;9217;9218;9219;9220	9213		10	
LSSQEAASSFGDDR	0	1	Unmodified	1468.643	0.64301522	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.334	16.334	2	9.8244E-57	8470	DP1063-8	256.31	205.86			1.0592	1.0594	14.547	3	0	Plateau	433820000	208690000	225130000	1935	94	1843	4460;4461;4462	9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232	9226		12	9606
LSSQEAASSFGDDRLLIEK	1	1	Unmodified	2065.0328	0.032763277	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.33	0.471		2	1			19.058	19.058	2;3	5.2563E-36	11845	DP1063-7	214.58	200.34			0.95903	1.0042	17.219	3	0	Plateau	202620000	101910000	100720000	1936	94	1844	4463;4464;4465	9233;9234;9235;9236;9237;9238;9239;9240;9241;9242	9239		10	9606
LSTQSNSNNIEPAR	0	1	Unmodified	1529.7434	0.74339797	380	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	1	0	1					14.518	14.518	2	0.0023633	4333	DP1063-6	111.86	77.101			NaN	NaN	NaN	0	0	Median	0	0	0	1937	380	1845	4466	9243	9243		1	9606
LSVACFYGGTPYGGQFER	0	1	Unmodified	2007.9149	0.91489675	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				21.136	21.136	2	2.2989999999999998E-40	14617	DP1063-7	237.32	190.26			NaN	NaN	NaN	0	0	Median	41057000	0	41057000	1938	531	1846	4467	9244;9245	9244		2	9606
LSVDYGKK	2	0	Unmodified	908.49673	0.49673232	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	4	0				1		13.866	13.866	2	0.046494	5191	DP1063-9	62.464	62.464			2.45	2.5917	NaN	1	0	Median	21783000	6202200	15581000	1939	310;434;492	1847	4468	9246	9246		1	9606
LSYNTASNKTR	1	1	Unmodified	1253.6364	0.6364137	223	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	1	5	0					1	13.02	13.02	3	0.028742	5062	DP1063-10	71.221	42.318			NaN	NaN	NaN	0	0	Median	1557900	0	1557900	1940	223	1848	4469	9247;9248	9248		2	9606
LTAQFVAR	0	1	Unmodified	904.51305	0.51305109	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				16.415	16.415	2	1.6584E-05	8217	DP1063-7	139.92	82.453			0.57366	0.58428	NaN	1	0	Median	75990000	50328000	25662000	1941	406	1849	4470	9249;9250;9251;9252	9251		4	9606
LTDQVMQNPR	0	1	Oxidation (M)	1216.587	0.58702067	487	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	1	0	3	0			1			13.825	13.825	2	5.9975E-06	5181	DP1063-8	136.8	108.59			11.083	11.484	NaN	1	0	Median	10217000	1238600	8977900	1942	487	1850	4471	9253;9254	9253	566	2	9606
LTEGCSFR	0	1	Unmodified	968.43857	0.43856552	207	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	yes	no	0	0	0	5	0					1	15.042	15.042	2	0.00036141	7359	DP1063-10	136.16	92.386			4.2833	3.0894	NaN	1	0	Median	68539000	12825000	55714000	1943	207	1851	4472	9255;9256;9257;9258	9256		4	9606
LTEQKGEQQIQK	2	0	Unmodified	1428.7573	0.75725712	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	0	1					12.794	12.794	3	0.054224	2283	DP1063-6	61.11	30.905			NaN	NaN	NaN	0	0	Median	6792800	0	6792800	1944	585	1852	4473	9259	9259		1	9606
LTEVKDELEPLLELVEQGIIPPGK	2	0	Unmodified	2658.4731	0.47314992	530	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			25.645	25.645	3	0.029943	20224	DP1063-8	59.789	41.791			NaN	NaN	NaN	0	0	Median	3662400	0	3662400	1945	530	1853	4474	9260;9261	9261		2	9606
LTFLVAQK	1	0	Unmodified	918.55385	0.55385327	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.746	18.746	2	3.0046E-15	9587	DP1063-6	174.64	97.267			0.92905	0.95251	11.09	2	0	Median	535980000	275050000	260930000	1946	355	1854	4475;4476	9262;9263;9264;9265;9266;9267	9264		6	9606
LTIIVSDPSHCNVLR	0	1	Unmodified	1722.9087	0.90868916	315	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	4	0				2		18.668	18.668	3	4.126E-05	11534	DP1063-9	141.73	99.902			NaN	NaN	NaN	0	0	Median	0	0	0	1947	315	1855	4477;4478	9268;9269	9268		2	9606
LTLIDPETLLPR	0	1	Unmodified	1379.8024	0.8024164	441	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				23.457	23.457	2	0.021953	17622	DP1063-7	97.597	43.531			NaN	NaN	NaN	0	0	Median	0	0	0	1948	441	1856	4479	9270	9270		1	9606
LTLTFNR	0	1	Unmodified	863.4865	0.48650199	192	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		18.384	18.384	2	0.01246	11157	DP1063-9	88.029	36.456			1.9579	2.0481	NaN	1	0	Median	18117000	6347100	11770000	1949	192	1857	4480	9271;9272	9272		2	9606
LTMLDIASNR	0	1	Oxidation (M)	1148.586	0.58595803	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		17.037	17.037	2	0.010813	9359	DP1063-9	123.35	98.432			NaN	NaN	NaN	0	0	Median	32914000	0	32914000	1950	405	1858	4481	9273;9274	9274	503	2	9606
LTMLDIASNR	0	1	Unmodified	1132.591	0.59104341	405	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		19.763	19.763	2	0.036985	13087	DP1063-9	84.213	12.521			NaN	NaN	NaN	0	0	Median	10201000	0	10201000	1951	405	1858	4482	9275	9275		1	9606
LTPEEEEILNK	1	0	Unmodified	1313.6715	0.6714618	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	17.978	17.978	2	2.9E-05	10949	DP1063-10	131.5	131.5			10.133	6.0112	NaN	1	0	Median	130350000	10998000	119360000	1952	267	1859	4483	9276;9277;9278	9276		3	9606
LTPEEEEILNKK	2	0	Unmodified	1441.7664	0.76642482	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	16.658	16.658	3	0.023389	9262	DP1063-10	74.962	36.002			NaN	NaN	NaN	0	0	Median	18374000	0	18374000	1953	267	1860	4484	9279	9279		1	9606
LTPEEEEILNKKR	2	1	Unmodified	1597.8675	0.86753585	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	2	5	0					1	15.612	15.612	3	0.0085129	8059	DP1063-10	85.522	57.942			NaN	NaN	NaN	0	0	Median	0	0	0	1954	267	1861	4485	9280	9280		1	9606
LTQDQDVDVK	1	0	Unmodified	1159.5721	0.57208211	182	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	3	0			1			14.367	14.367	2	4.0504E-05	5922	DP1063-8	128.86	93.239			3.3348	3.3587	NaN	1	0	Median	21458000	4932000	16526000	1955	182	1862	4486	9281;9282	9281		2	9606
LTQILSYLR	0	1	Unmodified	1105.6495	0.64954457	356	Q13123	IK	Protein Red	yes	yes	0	0	0	2	0		2				20.834	20.834	2	4.1203E-12	14244	DP1063-7	184.38	103.08			NaN	NaN	NaN	0	0	Median	0	0	0	1956	356	1863	4487;4488	9283;9284	9284		2	9606
LTQTSGETTHTDKEPVGEGK	2	0	Unmodified	2114.0128	0.012756116	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	2	2				12.908	12.908	3;4	0.00014318	3522	DP1063-7	122.13	99.501			NaN	NaN	NaN	0	0	Median	44716000	0	44716000	1957	211	1864	4489;4490;4491;4492	9285;9286;9287;9288;9289;9290;9291;9292;9293	9290		9	9606
LTQTSGETTHTDKVPGGEDK	2	0	Unmodified	2099.9971	0.99710605	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.83	0.687	2	3	1			13.247	13.247	2;3;4	2.6527E-08	4456	DP1063-8	153.04	117.72			NaN	NaN	NaN	0	0	Median	126890000	0	126890000	1958	211	1865	4493;4494;4495;4496;4497;4498	9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304	9303		11	9606
LTQTSGETTHTHTEPTGDGK	1	0	Unmodified	2096.9611	0.9610549	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	2	2	2			12.583	12.583	3;4	8.2148E-08	3212	DP1063-7	149.12	125.94			NaN	NaN	NaN	0	0	Median	98078000	0	98078000	1959	211	1866	4499;4500;4501;4502;4503;4504	9305;9306;9307;9308;9309;9310;9311;9312;9313;9314;9315;9316	9311		12	9606
LTQTSGQSTHTHKEPASGDEGIK	2	0	Unmodified	2408.1568	0.15679459	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				12.614	12.614	4	0.00035955	2081	DP1063-6	94.632	79.704			NaN	NaN	NaN	0	0	Median	24523000	0	24523000	1960	211	1867	4505;4506	9317;9318;9319;9320	9318		4	9606
LTSDDVKEQIYK	2	0	Unmodified	1437.7351	0.73512469	274	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	16.371	16.371	2	2.3077E-06	8957	DP1063-10	195.83	155.33			NaN	NaN	NaN	0	0	Median	46890000	0	46890000	1961	274	1868	4507	9321;9322	9322		2	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Oxidation (M)	2723.3259	0.32585053	311;109;373	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.5	0.5			1	1		21.574	21.574	3	1.2595E-06	15092	DP1063-8	94.542	81.412			3.3972	3.5368	5.3094	2	0	Median	347350000	73933000	273410000	1962	109;311;373	1869	4508;4509	9323;9324;9325;9326;9327;9328	9324	120	6	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Unmodified	2707.3309	0.33093591	311;109;373	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3	0			2			23.533	23.533	2;3	5.4229E-12	17677	DP1063-8	144.43	144.43			3.902	4.0431	NaN	1	0	Median	108140000	18990000	89153000	1963	109;311;373	1869	4510;4511	9329;9330;9331;9332;9333;9334;9335	9330		7	9606
LTVNDFVR	0	1	Unmodified	962.51853	0.5185304	555	Q9UJS0;O75746	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	yes	no	0	0	0	3	0			1			19.215	19.215	2	0.0475	12164	DP1063-8	86.953	26.66			NaN	NaN	NaN	0	0	Median	8656900	0	8656900	1964	555	1870	4512	9336	9336		1	9606
LTWHSCPEDEAQ	0	0	Unmodified	1471.6038	0.60379294	359	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	16.81	16.81	2	3.9973E-06	9489	DP1063-10	164.68	145.08			NaN	NaN	NaN	0	0	Median	0	0	0	1965	359	1871	4513	9337;9338;9339	9339		3	9606
LVAFCPFASSQVALENANAVSEGVVHEDLR	0	1	Unmodified	3228.5874	0.5873616	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			23.235	23.235	3	1.2357E-14	17385	DP1063-8	113.64	76.428			7.3719	7.6386	NaN	1	0	Median	55599000	7622700	47977000	1966	35	1872	4514	9340;9341;9342	9342		3	9606
LVAIVDVIDQNR	0	1	Unmodified	1353.7616	0.76161421	231	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	4.86	0.35				1	6	21.169	21.169	2	2.7697E-32	15171	DP1063-10	225.87	171.33			10.444	9.0717	17.313	2	0	Median	211730000	18884000	192840000	1967	231	1873	4515;4516;4517;4518;4519;4520;4521	9343;9344;9345;9346;9347;9348;9349;9350;9351;9352;9353;9354	9344		12	9606
LVCLAAFILQK	1	0	Unmodified	1274.7421	0.74206475	522	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	2	0		2				23.165	23.165	2	0.026032	17220	DP1063-7	93.429	51.449			NaN	NaN	NaN	0	0	Median	0	0	0	1968	522	1874	4522;4523	9355;9356	9355		2	9606
LVDQNLNK	1	0	Unmodified	942.51345	0.51344502	56	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	2	0		1				13.987	13.987	2	0.05327	4938	DP1063-7	84.244	48.799			NaN	NaN	NaN	0	0	Median	7565300	0	7565300	1969	56	1875	4524	9357	9357		1	9606
LVEALCAEHQINLIK	1	0	Unmodified	1749.9447	0.94474031	169	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					2	18.976	18.976	2;3	3.7432E-13	12349	DP1063-10	171.26	122.28			4.0512	2.4033	NaN	1	0	Median	38693000	5842700	32851000	1970	169	1876	4525;4526	9358;9359;9360;9361	9360		4	9606
LVEQYTK	1	0	Unmodified	879.47018	0.47018322	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				14.31	14.31	2	0.00043722	5350	DP1063-7	134.66	79.159			0.84631	0.87206	NaN	1	0	Median	32913000	17612000	15301000	1971	406	1877	4527	9362;9363;9364;9365	9363		4	9606
LVEVDSGR	0	1	Unmodified	873.4556	0.45559579	157	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	3	0			1			14.388	14.388	2	0.0013199	5951	DP1063-8	127.84	56.931			1.1295	1.1703	NaN	1	0	Median	20206000	10170000	10036000	1972	157	1878	4528	9366;9367	9366		2	9606
LVGSVNLFSDENVPR	0	1	Unmodified	1644.8471	0.84713476	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				20.609	20.609	2	9.89E-17	13934	DP1063-7	187.58	149.58			NaN	NaN	NaN	0	0	Median	25069000	0	25069000	1973	493	1879	4529	9368;9369	9369		2	9606
LVILANNCPALR	0	1	Unmodified	1352.7598	0.75984008	293	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	19.104	19.104	2	5.9557E-10	12505	DP1063-10	171.73	143.34			11.455	8.2619	NaN	1	0	Median	129600000	9623200	119980000	1974	293	1880	4530	9370;9371;9372;9373;9374	9371		5	9606
LVINGNPITIFQER	0	1	Unmodified	1612.8937	0.89369102	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		22.18	22.18	2	0.0015408	16235	DP1063-9	110.08	81.271			0.76476	0.79996	NaN	1	0	Median	8026500	4346300	3680200	1975	89	1881	4531	9375;9376	9376		2	9606
LVLADLLEPVK	1	0	Unmodified	1208.738	0.73802523	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	3	1		1		1		23.173	23.173	2	0.0084067	17264	DP1063-7	113.62	66.731			NaN	NaN	NaN	0	0	Median	7655300	0	7655300	1976	504	1882	4532;4533	9377;9378;9379	9377		3	9606
LVLGLSFSAALNAPIEK	1	0	Unmodified	1741.9978	0.99782174	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		23.17	23.17	2	0.00052383	17445	DP1063-9	105.19	79.278			1.0682	1.0868	10.107	2	0	Median	32701000	16031000	16670000	1977	524	1883	4534;4535	9380;9381	9381		1	9606
LVLSTLSGRPVK	1	1	Unmodified	1268.7816	0.78162138	568	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	1	4	0				1		16.84	16.84	2	0.0035213	9056	DP1063-9	145.9	73.674			NaN	NaN	NaN	0	0	Median	10155000	0	10155000	1978	568	1884	4536	9382	9382		1	9606
LVMAGETTNSR	0	1	Oxidation (M)	1193.571	0.57103625	173	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	1	0	1	0	1					13.306	13.306	2	0.02108	2862	DP1063-6	61.65	39.904			0.59559	0.61219	NaN	1	0	Median	1094600	519400	575200	1979	173	1885	4537	9383	9383	199	1	9606
LVNELTEFAK	1	0	Unmodified	1162.6234	0.6233894	12	CON__P02769			yes	yes	0	0	0	3.78	0.739	1	1	4	24	2	22.015	22.015	1;2	0.00060174	22377	DP1063-8	195.32	144.13		+	NaN	NaN	NaN	0	0	Median	54463000000	54463000000	0	1980	12	1886	4538;4539;4540;4541;4542;4543;4544;4545;4546;4547;4548;4549;4550;4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567;4568;4569	9384;9385;9386;9387;9388;9389;9390;9391;9392;9393;9394;9395;9396;9397;9398;9399;9400;9401;9402;9403;9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451;9452;9453;9454;9455;9456;9457;9458;9459;9460;9461;9462;9463;9464;9465;9466;9467;9468;9469;9470;9471;9472;9473;9474;9475;9476;9477;9478;9479;9480;9481;9482;9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493;9494;9495;9496;9497;9498;9499;9500;9501;9502;9503;9504;9505;9506;9507;9508;9509;9510;9511;9512;9513;9514;9515;9516;9517;9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528;9529;9530;9531;9532;9533;9534;9535;9536;9537;9538;9539;9540;9541;9542;9543;9544;9545;9546;9547;9548;9549;9550;9551;9552;9553;9554;9555;9556;9557;9558;9559;9560;9561;9562;9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574;9575;9576;9577;9578;9579;9580;9581;9582;9583	9508		200	
LVNHFVEEFK	1	0	Unmodified	1260.6503	0.65027285	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			2			17.733	17.733	2;3	2.2954E-07	10218	DP1063-8	139.43	139.43			5.0766	5.113	3.6438	2	0	Median	298040000	54520000	243520000	1981	124	1887	4570;4571	9584;9585;9586;9587	9587		4	9606
LVNHFVEEFKR	1	1	Unmodified	1416.7514	0.75138388	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			16.69	16.69	2	5.2186E-23	8994	DP1063-8	205.18	151.68			5.3625	5.3919	NaN	1	0	Median	94562000	14401000	80161000	1982	124	1888	4572	9588;9589	9588		2	9606
LVPELDTIVPLESTK	1	0	Unmodified	1652.9237	0.92365374	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.976	21.976	2;3	2.6556E-06	15771	DP1063-8	156.2	139.8			0.82727	0.8417	16.607	2	0	Median	72354000	37723000	34630000	1983	95	1889	4573;4574	9590;9591;9592;9593;9594;9595;9596;9597	9593		8	9606
LVPTGLDFGQEGFTR	0	1	Unmodified	1635.8257	0.82567103	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				21.16	21.16	2	2.7929E-13	14666	DP1063-7	174.77	133.77			NaN	NaN	NaN	0	0	Median	43319000	0	43319000	1984	212	1890	4575	9598;9599	9599		2	9606
LVPVGYGIRK	1	1	Unmodified	1100.6706	0.67061436	180	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	1	1	0	1					19.689	19.689	2	0.038145	10882	DP1063-6	50.966	11.944			1.0022	1.0583	NaN	1	0	Median	25405000	11971000	13434000	1985	180	1891	4576	9600	9600		0	9606
LVPVHYDETEAER	0	1	Unmodified	1556.7471	0.74708636	456	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		15.833	15.833	3	0.041185	7721	DP1063-9	68.809	49.231			NaN	NaN	NaN	0	0	Median	20056000	0	20056000	1986	456	1892	4577	9601	9601		1	9606
LVPVHYDETEAEREK	1	1	Unmodified	1813.8846	0.88464248	456	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	1	4	0				2		15.099	15.099	3;4	0.0033453	6735	DP1063-9	88.78	63.19			NaN	NaN	NaN	0	0	Median	23599000	0	23599000	1987	456	1893	4578;4579	9602;9603;9604;9605;9606	9605		5	9606
LVQAFQFTDK	1	0	Unmodified	1195.6237	0.62372375	341	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	19.157	19.157	2	5.0722E-05	12603	DP1063-10	126.24	126.24			1.8899	1.1211	NaN	1	0	Median	28275000	10282000	17993000	1988	341	1894	4580	9607;9608	9607		2	9606
LVQAFQYTDK	1	0	Unmodified	1211.6186	0.61863837	358	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					1	17.595	17.595	2	0.0001769	10494	DP1063-10	118.18	86.417			2.6203	1.5544	NaN	1	0	Median	13881000	3090300	10791000	1989	358	1895	4581	9609;9610	9609		2	9606
LVQDVANNTNEEAGDGTTTATVLAR	0	1	Unmodified	2559.2413	0.2412525	126	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			2			18.028	18.028	3	0.012372	10585	DP1063-8	79.586	49.251			NaN	NaN	NaN	0	0	Median	19258000	0	19258000	1990	126	1896	4582;4583	9611;9612	9612		2	9606
LVQSPNSYFMDVK	1	0	Oxidation (M)	1542.7388	0.73882986	207	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	yes	no	0	1	0	5	0					1	18.798	18.798	2	0.00049138	12042	DP1063-10	122.51	122.51			3.7203	2.207	NaN	1	0	Median	49521000	9569000	39952000	1991	207	1897	4584	9613;9614;9615;9616	9614	233	4	9606
LVQSPNSYFMDVK	1	0	Unmodified	1526.7439	0.74391524	207	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	yes	no	0	0	0	5	0					1	19.71	19.71	2	0.00056471	13332	DP1063-10	129	67.222			2.4749	1.4682	NaN	1	0	Median	10619000	2578500	8040900	1992	207	1897	4585	9617;9618	9618		2	9606
LVRPPVQVYGIEGR	0	2	Unmodified	1581.8991	0.89911075	221	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	1	5	0					1	18.049	18.049	3	0.0010902	11121	DP1063-10	94.728	94.728			1.5243	1.5471	NaN	1	0	Median	10051000	3709100	6342400	1993	221	1898	4586	9619;9620;9621;9622	9620		4	9606
LVSDIIDPVALEIPLSK	1	0	Unmodified	1821.0499	0.049916891	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1.5	0.5	1	1				23.943	23.943	2	0.00034456	16173	DP1063-6	135.81	110.96			NaN	NaN	NaN	0	0	Median	8466700	0	8466700	1994	426	1899	4587;4588	9623;9624;9625;9626	9623		4	9606
LVSSDPEINTK	1	0	Unmodified	1201.619	0.6190323	565	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				2		15.239	15.239	2	0.022135	6912	DP1063-9	103.7	59.351			NaN	NaN	NaN	0	0	Median	0	0	0	1995	565	1900	4589;4590	9627;9628	9627		2	9606
LVTDLTK	1	0	Unmodified	788.46437	0.46436956	12	CON__P02769			no	no	0	0	0	2.95	0.208		1	21			32.983	32.983	1;2	0.00051136	25635	DP1063-8	132.96	42.021		+	NaN	NaN	NaN	0	0	Median	6412400	6412400	0	1996	12	1901	4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612	9629;9630;9631;9632;9633;9634;9635;9636;9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653	9630		25	
LVTEMGTYATQSALSSSRPTK	1	1	Oxidation (M)	2243.1104	0.11036167	242	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	1	2	0		2				16.37	16.37	3	0.00025647	8188	DP1063-7	101.49	75.669			NaN	NaN	NaN	0	0	Median	0	0	0	1997	242	1902	4613;4614	9654;9655	9655	301	2	9606
LVVDSHVQYR	0	1	Unmodified	1214.6408	0.6407708	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					15.536	15.536	2	0.028227	5611	DP1063-6	89.698	42.616			NaN	NaN	NaN	0	0	Median	3059200	0	3059200	1998	431	1903	4615	9656	9656		1	9606
LVVGGLLSPEEDQSLLLSQFR	0	1	Unmodified	2299.2424	0.24236212	503	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	3	0			1			24.74	24.74	2	8.2899E-27	19165	DP1063-8	198.81	152.53			NaN	NaN	NaN	0	0	Median	12180000	0	12180000	1999	503	1904	4616	9657;9658	9657		2	9606
LVVSTQTALA	0	0	Unmodified	1001.5757	0.57571092	12	CON__P02769			yes	yes	0	0	0	2.64	0.557	1	7	17			22.005	22.005	2	0.0069978	11763	DP1063-7	124.83	88.388		+	NaN	NaN	NaN	0	0	Median	0	0	0	2000	12	1905	4617;4618;4619;4620;4621;4622;4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633;4634;4635;4636;4637;4638;4639;4640;4641	9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669;9670;9671;9672;9673;9674;9675;9676;9677;9678;9679;9680;9681;9682;9683;9684;9685	9661		27	
LVVWAADR	0	1	Unmodified	928.51305	0.51305109	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		18.3	18.3	2	0.0010667	10761	DP1063-7	130.04	88.737			1.0746	1.062	4.0286	3	0	Plateau	677870000	331030000	346840000	2001	483	1906	4642;4643;4644	9686;9687;9688;9689;9690;9691;9692;9693;9694;9695	9686		10	9606
LVYVFSQDFTVFGGSLSGAHAQK	1	0	Unmodified	2457.2329	0.23286007	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			22.518	22.518	2;3	2.3897E-88	16413	DP1063-8	266.85	244.46			1.0963	1.1041	1.3318	2	0	Median	499880000	250390000	249490000	2002	95	1907	4645;4646	9696;9697;9698;9699;9700;9701;9702;9703;9704;9705	9702		10	9606
LWGIPDQAR	0	1	Unmodified	1054.556	0.55597854	451	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	2	0		1				19.859	19.859	2	0.036163	12927	DP1063-7	86.833	46.565			NaN	NaN	NaN	0	0	Median	8316600	0	8316600	2003	451	1908	4647	9706	9706		1	9606
LWIANYSLPR	0	1	Unmodified	1231.6713	0.67134264	50	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			21.093	21.093	2	0.010538	14658	DP1063-8	109.71	43.022			NaN	NaN	NaN	0	0	Median	11978000	0	11978000	2004	50	1909	4648	9707;9708	9708		2	9606
LWTLVSEQTR	0	1	Unmodified	1231.6561	0.65608651	213	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	5	0					1	19.706	19.706	2	1.8666E-09	13287	DP1063-10	166.52	125.52			7.8654	5.673	NaN	1	0	Median	38097000	4606700	33490000	2005	213	1910	4649	9709;9710	9710		2	9606
LYALGLVPTR	0	1	Unmodified	1101.6546	0.65462995	535	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	0	0	5	0					1	20.45	20.45	2	0.032043	14280	DP1063-10	87.308	66.683			NaN	NaN	NaN	0	0	Median	4642200	0	4642200	2006	535	1911	4650	9711;9712	9711		2	9606
LYDLNHNEIGELIR	0	1	Unmodified	1697.8737	0.87368386	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					20.198	20.198	3	0.0099583	11528	DP1063-6	85.42	47.399			NaN	NaN	NaN	0	0	Median	6631300	0	6631300	2007	71	1912	4651	9713	9713		1	9606
LYDVVAVFPK	1	0	Unmodified	1149.6434	0.64339656	315	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	4	0				1		20.991	20.991	2	0.04011	14657	DP1063-9	115.49	58.213			NaN	NaN	NaN	0	0	Median	0	0	0	2008	315	1913	4652	9714	9714		1	9606
LYQHEINLFK	1	0	Unmodified	1303.6925	0.69247202	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				18.14	18.14	2	0.022	10512	DP1063-7	93.598	51.31			NaN	NaN	NaN	0	0	Median	7215500	0	7215500	2009	338	1914	4653	9715	9715		1	9606
LYTLVTYVPVTTFK	1	0	Unmodified	1643.9174	0.91744615	294	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	22.421	22.421	2	1.952E-15	16725	DP1063-10	184.36	184.36			5.2803	3.1325	NaN	1	0	Median	47420000	7815500	39605000	2010	294	1915	4654	9716;9717	9717		2	9606
LYTSAPNTSQGK	1	0	Unmodified	1265.6252	0.62518031	421	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2.5	0.5		1	1			14.215	14.215	2	0.0050172	5721	DP1063-8	115.7	67.784			NaN	NaN	NaN	0	0	Median	13097000	0	13097000	2011	421	1916	4655;4656	9718;9719;9720	9720		3	9606
LYVGGLSQDISEADLQNQFSR	0	1	Unmodified	2339.1394	0.13935361	435	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	2	0		1				21.985	21.985	2	1.3635E-18	15742	DP1063-7	183.41	140.45			NaN	NaN	NaN	0	0	Median	8182000	0	8182000	2012	435	1917	4657	9721;9722	9722		2	9606
MAALEVYVR	0	1	Oxidation (M)	1066.5481	0.54811597	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				17.793	17.793	2	0.00015583	8347	DP1063-6	129.68	75.525			1.0476	1.055	8.1937	2	0	Median	606190000	307240000	298950000	2013	355	1918	4658;4659	9723;9724;9725;9726;9727;9728	9724	434	6	9606
MAALEVYVR	0	1	Unmodified	1050.5532	0.55320134	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.07	19.07	2	0.0003458	10000	DP1063-6	125.81	61.607			1.0182	1.0441	NaN	1	0	Median	59295000	29736000	29560000	2014	355	1918	4660	9729;9730;9731	9730		3	9606
MADALDNYVIR	0	1	Oxidation (M)	1295.618	0.61798644	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		18.998	18.998	2	1.124E-10	11715	DP1063-7	169.41	132.21			0.88142	0.89756	15.843	2	0	Median	364040000	179530000	184510000	2015	94	1919	4661;4662;4663	9732;9733;9734;9735;9736;9737;9738	9732	88	7	9606
MADALDNYVIR	0	1	Unmodified	1279.6231	0.62307182	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0		1				19.798	19.798	2	4.5987E-07	12862	DP1063-7	155.84	109.03			1.0115	1.0401	NaN	1	0	Median	41109000	20274000	20835000	2016	94	1919	4664	9739;9740	9739		2	9606
MADEAVCVGPAPTSK	1	0	Oxidation (M)	1547.696	0.69597877	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.33	0.943		1	3	1	1	15.604	15.604	2	8.603499999999999E-87	7099	DP1063-7	281.17	247.08			0.88232	0.90916	15.484	3	0	Median	226480000	109810000	116670000	2017	94	1920	4665;4666;4667;4668;4669;4670	9741;9742;9743;9744;9745;9746;9747;9748;9749;9750;9751;9752;9753;9754;9755	9743	89	15	9606
MADEAVCVGPAPTSK	1	0	Unmodified	1531.7011	0.70106415	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0		1				16.361	16.361	2	0.00071965	8157	DP1063-7	132.79	84.896			NaN	NaN	NaN	0	0	Median	15349000	0	15349000	2018	94	1920	4671	9756;9757	9757		2	9606
MADHYVPVPGGPNNNNYANVELILDIAK	1	0	Oxidation (M)	3053.4917	0.4916703	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					22.591	22.591	3	4.6712E-10	14582	DP1063-6	96.338	96.338			0.7511	0.7662	NaN	1	0	Median	16928000	7298000	9630500	2019	355	1921	4672	9758;9759;9760;9761;9762;9763	9758	435	6	9606
MADPESNQEAVNSSAAR	0	1	Oxidation (M)	1791.7694	0.76935472	380	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	1	0	1	0	1					14.145	14.145	2	1.5703E-08	3862	DP1063-6	151.78	124.35			NaN	NaN	NaN	0	0	Median	0	0	0	2020	380	1922	4673	9764	9764	473	1	9606
MAEDEAETIGNLIEECGGLEK	1	0	Oxidation (M)	2323.0196	0.019557332	37	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	1	0	3	0			1			22.773	22.773	2	0.021953	16721	DP1063-8	83.633	56.628			NaN	NaN	NaN	0	0	Median	0	0	0	2021	37	1923	4674	9765	9765	33	1	9606
MALIGLGVSHPVLK	1	0	Oxidation (M)	1449.8378	0.83775605	162	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	4	0				1		18.375	18.375	3	0.010019	11143	DP1063-9	50.843	32.507			1.1345	1.1661	NaN	1	0	Median	9287800	3636700	5651100	2022	162	1924	4675	9766;9767	9766	190	2	9606
MAPVITEETTLQLEDIIK	1	0	Oxidation (M)	2059.0759	0.075873645	34	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	1	0	2	0		1				22.967	22.967	2	0.0018448	17033	DP1063-7	120.84	79.596			NaN	NaN	NaN	0	0	Median	6770600	0	6770600	2023	34	1925	4676	9768;9769	9769	24	2	9606
MAQHLQAAVAFVEQGHVR	0	1	Oxidation (M)	2007.0109	0.010862818	535	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	1	0	5	0					1	17.89	17.89	4	0.00051321	10893	DP1063-10	110.32	65.739			NaN	NaN	NaN	0	0	Median	14595000	0	14595000	2024	535	1926	4677	9770;9771	9771	611	2	9606
MATEVAADALGEEWK	1	0	Oxidation (M)	1635.745	0.74503745	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	0	4	0				1		19.515	19.515	2	2.6188E-24	12840	DP1063-9	217.35	134.52			NaN	NaN	NaN	0	0	Median	95552000	0	95552000	2025	284	1927	4678	9772;9773	9773	338	2	9606
MATEVAADALGEEWKGYVVR	1	1	Oxidation (M)	2210.0678	0.067768574	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	4	0				2		20.522	20.522	2;3	5.587299999999999E-60	14084	DP1063-9	252.14	177.49			NaN	NaN	NaN	0	0	Median	45620000	0	45620000	2026	284	1928	4679;4680	9774;9775;9776	9774	338	3	9606
MATGLGEPVYGLSEDEGESR	0	1	Acetyl (Protein N-term);Oxidation (M)	2153.9423	0.94229329	481	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	1	1	0	1	0	2					15.175	15.175	2	0.0005972	5117	DP1063-6	94.688	60.302			NaN	NaN	NaN	0	0	Median	10728000	0	10728000	2027	481	1929	4681;4682	9777;9778;9779;9780	9780	547	4	9606
MAVTFIGNSTAIQELFK	1	0	Oxidation (M)	1884.9655	0.96553533	109	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	3.75	0.829			2	1	1	23.385	23.385	2;3	3.0301E-72	17461	DP1063-8	279.86	229.71			3.0617	3.0836	NaN	1	0	Median	197330000	4205200	193130000	2028	109	1930	4683;4684;4685;4686	9781;9782;9783;9784;9785;9786;9787;9788	9785	121	8	9606
MAVTFIGNSTAIQELFK	1	0	Unmodified	1868.9706	0.97062071	109	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			1			24.076	24.076	2	2.5776E-18	18361	DP1063-8	193.81	146.86			3.6575	3.6837	NaN	1	0	Median	41829000	9398600	32430000	2029	109	1930	4687	9789;9790	9789		2	9606
MAVTFIGNSTAIQELFKR	1	1	Oxidation (M)	2041.0666	0.066646362	109	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	1	3	0			1			21.961	21.961	3	2.7642E-06	15761	DP1063-8	147.07	105.37			NaN	NaN	NaN	0	0	Median	11594000	0	11594000	2030	109	1931	4688	9791	9791	121	1	9606
MAYVVDLDDEYADTDIPTTLIR	0	1	Oxidation (M)	2544.1942	0.19415088	356	Q13123	IK	Protein Red	yes	yes	0	1	0	2	0		1				22.909	22.909	2	1.0752999999999999E-60	16918	DP1063-7	249.39	225.79			NaN	NaN	NaN	0	0	Median	10093000	0	10093000	2031	356	1932	4689	9792;9793;9794	9794	458	3	9606
MCLFAGFQR	0	1	Oxidation (M)	1144.5158	0.51576998	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	2	0		1				19.595	19.595	2	0.018377	12551	DP1063-7	66.682	47.588			3.8201	3.9653	NaN	1	0	Median	20360000	3911300	16449000	2032	330	1933	4690	9795;9796	9795	397	2	9606
MDDREDLVYQAK	1	1	Acetyl (Protein N-term);Oxidation (M)	1539.6875	0.68752257	270	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	1	1	4	0				1		17.128	17.128	2	0.0024966	9424	DP1063-9	79.974	79.974			1.1476	1.0853	NaN	1	0	Median	22508000	10171000	12337000	2033	270	1934	4691	9797;9798;9799;9800	9799	325	4	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	1.19	0.722	50	1	1	1	1	26.155	26.155	2;3	1.3572E-91	10850	DP1063-6	280.23	280.23			0.68677	0.67667	17.821	11	0	Median	1222400000	681430000	540920000	2034	355	1935	4692;4693;4694;4695;4696;4697;4698;4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709;4710;4711;4712;4713;4714;4715;4716;4717;4718;4719;4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745	9801;9802;9803;9804;9805;9806;9807;9808;9809;9810;9811;9812;9813;9814;9815;9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826;9827;9828;9829;9830;9831;9832;9833;9834;9835;9836;9837;9838;9839;9840;9841;9842;9843;9844;9845;9846;9847;9848;9849;9850;9851;9852;9853;9854;9855;9856;9857;9858;9859;9860;9861;9862;9863;9864;9865;9866;9867;9868;9869;9870;9871;9872;9873;9874;9875;9876;9877;9878;9879;9880;9881;9882;9883;9884;9885;9886;9887;9888	9806	436	88	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term)	2103.0055	0.0055026685	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	1.5	0.5	1	1				20.858	20.858	2	1.2681E-73	12336	DP1063-6	258.39	211.16			0.78925	0.80941	NaN	1	0	Median	64274000	36796000	27478000	2035	355	1935	4746;4747	9889;9890;9891;9892;9893	9892		5	9606
MDFQHRPGGK	1	1	Acetyl (Protein N-term);Oxidation (M)	1229.5611	0.56114027	404	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	1	1	1	3	0			1			13.615	13.615	3	0.00069298	4926	DP1063-8	81.972	68.964			0.73069	0.7347	NaN	1	0	Median	81284000	45436000	35848000	2036	404	1936	4748	9894;9895;9896;9897	9896	497	4	9606
MDKNELVQK	2	0	Acetyl (Protein N-term);Oxidation (M)	1161.57	0.56997362	302	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	1	1	1	4	0				1		14.226	14.226	2	0.0066345	5562	DP1063-9	82.749	39.667			0.83749	0.88594	NaN	1	0	Median	8149300	4458400	3690900	2037	302	1937	4749	9898;9899	9899	359	2	9606
MDNYADLSDTELTTLLR	0	1	Acetyl (Protein N-term);Oxidation (M)	2027.9358	0.93575135	230	P50402	EMD	Emerin	yes	yes	1	1	0	4	0				1		25.088	25.088	2	3.3141E-06	19685	DP1063-9	119.87	79.29			NaN	NaN	NaN	0	0	Median	0	0	0	2038	230	1938	4750	9900	9900	265	1	9606
MDPNTIIEALR	0	1	Acetyl (Protein N-term);Oxidation (M)	1329.6599	0.65985126	79	O95373	IPO7	Importin-7	yes	yes	1	1	0	2	0		1				23.294	23.294	2	0.014385	17416	DP1063-7	74.533	26.25			NaN	NaN	NaN	0	0	Median	0	0	0	2039	79	1939	4751	9901	9901	71	1	9606
MDTDLETMDLDQGGEALAPR	0	1	2 Oxidation (M)	2208.9515	0.95147777	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	2	0	1	0	1					19.122	19.122	2	1.6877E-10	10100	DP1063-6	130.2	101.92			NaN	NaN	NaN	0	0	Median	0	0	0	2040	71	1940	4752	9902	9902	61;62	1	9606
MDVFLMIR	0	1	Acetyl (Protein N-term);2 Oxidation (M)	1097.5249	0.52493768	401	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	1	2	0	5	0					1	23.055	23.055	2	0.015144	17415	DP1063-10	79.116	56.376			NaN	NaN	NaN	0	0	Median	12862000	0	12862000	2041	401	1941	4753	9903	9903	494;495	1	9606
MEADPELSK	1	0	Oxidation (M)	1034.459	0.45902619	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					13.874	13.874	2	0.008179	3516	DP1063-6	78.264	48.188			1.5236	1.5542	NaN	1	0	Median	4743000	1304300	3438600	2042	71	1942	4754	9904	9904	63	1	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);3 Oxidation (M)	2996.237	0.2370368	105	P06748	NPM1	Nucleophosmin	yes	yes	1	3	1	4.2	0.4				8	2	25.425	25.425	3	1.5806E-06	16705	DP1063-10	116.27	102.83			NaN	NaN	NaN	0	0	Median	178050000	0	178050000	2043	105	1943	4755;4756;4757;4758;4759;4760;4761;4762;4763;4764	9905;9906;9907;9908;9909;9910;9911;9912;9913;9914;9915;9916;9917	9906	107;108;109;110	13	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);4 Oxidation (M)	3012.232	0.23195142	105	P06748	NPM1	Nucleophosmin	yes	yes	1	4	1	4	0				1		21.993	21.993	3	3.7929E-07	15720	DP1063-9	95.122	92.373			NaN	NaN	NaN	0	0	Median	529360000	6503100	522860000	2044	105	1943	4765	9918;9919;9920;9921	9918	107;108;109;110	4	9606
MEDSMDMDMSPLRPQNYLFGCELK	1	1	Acetyl (Protein N-term);Oxidation (M)	2964.2472	0.24720756	105	P06748	NPM1	Nucleophosmin	yes	yes	1	1	1	4	0				3		23.844	23.844	2;3	0.00087341	18258	DP1063-9	89.358	76.918			NaN	NaN	NaN	0	0	Median	6119000	0	6119000	2045	105	1943	4766;4767;4768	9922;9923;9924;9925	9923	107;108;109;110	4	9606
MEGDAVEAIVEESETFIK	1	0	Acetyl (Protein N-term);Oxidation (M)	2053.9402	0.94016802	228	P49711	CTCF	Transcriptional repressor CTCF	yes	yes	1	1	0	2	0		1				27.501	27.501	2	2.1895E-07	22368	DP1063-7	152.99	109.49			NaN	NaN	NaN	0	0	Median	2571900	0	2571900	2046	228	1944	4769	9926;9927	9926	264	2	9606
MEGQSVEELLAK	1	0	Acetyl (Protein N-term)	1374.6701	0.67008159	392	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	1	0	0	4	0				1		23.09	23.09	2	0.014513	17307	DP1063-9	82.029	32.492			NaN	NaN	NaN	0	0	Median	1529800	0	1529800	2047	392	1945	4770	9928;9929	9928		2	9606
MEKPPAPPSLPAGPPGVK	2	0	Oxidation (M)	1784.9495	0.94949134	404	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	1	3	0			1			17.062	17.062	3	0.00051389	9468	DP1063-8	84.829	84.829			0.94318	0.91814	NaN	1	0	Median	94200000	45736000	48464000	2048	404	1946	4771	9930;9931	9931	498	2	9606
MELITILEK	1	0	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	386	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	1	0	2	0		1				25.116	25.116	2	0.0083313	19727	DP1063-7	66.621	66.621			2.0398	2.1019	NaN	1	0	Median	5103500	1609100	3494400	2049	386	1947	4772	9932;9933	9933	481	2	9606
MEQQQLEEQK	1	0	Oxidation (M)	1305.5871	0.58708025	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				13.241	13.241	2	2.8057E-06	3956	DP1063-7	214.05	168.37			NaN	NaN	NaN	0	0	Median	21574000	0	21574000	2050	532	1948	4773	9934;9935	9935	604	2	9606
MEQQQLEEQK	1	0	Unmodified	1289.5922	0.59216562	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				14.099	14.099	2	0.0018435	5114	DP1063-7	159.28	120.13			NaN	NaN	NaN	0	0	Median	3054200	0	3054200	2051	532	1948	4774	9936	9936		1	9606
METMASPGKDNYR	1	1	Acetyl (Protein N-term);2 Oxidation (M)	1572.6548	0.65484224	59	O60684	KPNA6	Importin subunit alpha-7	yes	yes	1	2	1	3	0			1			14.165	14.165	2	0.0010022	5683	DP1063-8	106.29	78.809			NaN	NaN	NaN	0	0	Median	2122400	0	2122400	2052	59	1949	4775	9937;9938	9937	49;50	2	9606
MEVKPPPGRPQPDSGR	1	2	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	235	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	4	0				1		14.229	14.229	3	0.00049941	5536	DP1063-9	90.725	90.725			2.3584	2.7497	NaN	1	0	Median	13349000	4907000	8442400	2053	235	1950	4776	9939;9940	9939	269	2	9606
MGAGMGFGLER	0	1	2 Oxidation (M)	1156.5005	0.50051385	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0.816		1	1	1		16.699	16.699	2	0.0019428	8621	DP1063-7	77.533	54.105			1.2368	1.2641	12.818	3	0	Plateau	123370000	58259000	65108000	2054	236	1951	4777;4778;4779	9941;9942;9943;9944;9945;9946;9947;9948;9949;9950;9951	9944	275;276	11	9606
MGANSLER	0	1	Unmodified	876.41235	0.41235077	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	no	0	0	0	2.5	0.5		1	1			14.376	14.376	2	0.0061593	5441	DP1063-7	89.296	50.504			1.5208	1.5748	50.964	2	0	Median	43677000	19464000	24213000	2055	236	1952	4780;4781	9952;9953;9954;9955	9952		4	9606
MGGMEGPFGGGMENMGR	0	1	4 Oxidation (M)	1777.6528	0.6528101	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	4	0	2	0		1				15.721	15.721	2	0.00031092	7148	DP1063-7	92.19	92.19			1.0182	1.0564	NaN	1	0	Median	16696000	8571700	8124500	2056	236	1953	4782	9956;9957;9958	9957	277;278;279;280	3	9606
MGGMVSFR	0	1	2 Oxidation (M)	915.39426	0.39425786	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					14.848	14.848	2	0.018473	4640	DP1063-6	62.464	34.042			1.0286	1.0296	NaN	1	0	Median	420310000	198020000	222290000	2057	355	1954	4783	9959;9960;9961;9962	9959	437;438	4	9606
MGGMVSFR	0	1	Oxidation (M)	899.39934	0.39934324	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					16.683	16.683	2	0.029648	7110	DP1063-6	66.073	18.157			1.0769	1.0996	NaN	1	0	Median	82869000	41256000	41613000	2058	355	1954	4784	9963	9963	437;438	0	9606
MGIYYIPVLGPAPR	0	1	Oxidation (M)	1561.8327	0.83267067	497	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	1	0	1	0	1					21.973	21.973	2	0.012146	13861	DP1063-6	100.25	67.386			NaN	NaN	NaN	0	0	Median	5783200	0	5783200	2059	497	1955	4785	9964	9964	577	1	9606
MGLAMGGGGGASFDR	0	1	2 Oxidation (M)	1414.5969	0.59693343	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0.816		1	1	1		15.848	15.848	2	0.00044344	7436	DP1063-7	120.57	105.03			1.2486	1.2693	13.412	3	0	Median	125020000	48853000	76170000	2060	236	1956	4786;4787;4788	9965;9966;9967;9968;9969;9970;9971;9972;9973;9974	9965	281;282	10	9606
MGPAMGPALGAGIER	0	1	2 Oxidation (M)	1458.6959	0.69591919	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	1		1		1		16.864	16.864	2	0.0014898	8792	DP1063-7	80.17	65.026			1.1436	1.1767	20.564	2	0	Median	128480000	60651000	67833000	2061	236	1957	4789;4790	9975;9976;9977;9978	9975	283;284	4	9606
MGPLGLDHMASSIER	0	1	2 Oxidation (M)	1644.76	0.75997601	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	2	0		1				16.445	16.445	2	0.00050182	8256	DP1063-7	114.76	100.32			1.3346	1.3636	NaN	1	0	Median	61876000	30371000	31505000	2062	236	1958	4791	9979;9980;9981;9982	9981	285;286	4	9606
MGQMAMGGAMGINNR	0	1	4 Oxidation (M)	1601.6419	0.64185148	397	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	4	0	3	0			3			13.094	13.094	2	0.00011568	4303	DP1063-8	112.85	94.949			NaN	NaN	NaN	0	0	Median	5048300	1673200	3375100	2063	397	1959	4792;4793;4794	9983;9984;9985	9984	486;487;488;489	3	9606
MGVPYCIIK	1	0	Oxidation (M)	1095.5457	0.54567312	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	1	0	4	0				1		18.174	18.174	2	0.005874	10834	DP1063-9	81.784	64.553			10.287	10.574	NaN	1	0	Median	38623000	3896000	34727000	2064	280	1960	4795	9986;9987	9986	335	2	9606
MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR	1	1	Oxidation (M)	3519.782	0.78203867	159	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	5	0					1	21.953	21.953	4	3.8437E-08	16150	DP1063-10	84.073	65.803			NaN	NaN	NaN	0	0	Median	6932200	6932200	0	2065	159	1961	4796	9988;9989	9988	187	2	9606
MHLYLGAAK	1	0	Oxidation (M)	1018.527	0.52698659	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1.5	0.5	1	1				14.749	14.749	2	6.7466E-06	4555	DP1063-6	138.85	88.241			1.1144	1.1425	16.33	2	0	Median	349550000	167620000	181930000	2066	355;38	1962	4797;4798	9990;9991;9992;9993;9994;9995;9996;9997	9993	38	8	9606
MHLYLGAAK	1	0	Unmodified	1002.5321	0.53207197	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					16.434	16.434	2	0.00036963	6677	DP1063-6	124.89	124.89			1.0505	1.0716	NaN	1	0	Median	137690000	76297000	61390000	2067	355;38	1962	4799	9998;9999;10000;10001	10001		4	9606
MIAGQVLDINLAAEPK	1	0	Oxidation (M)	1697.9022	0.9022068	111	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		20.511	20.511	2	1.7216E-10	14016	DP1063-9	169.09	125.29			3.5117	3.6094	NaN	1	0	Median	58997000	10974000	48023000	2068	111	1963	4800	10002;10003;10004;10005	10002	124	4	9606
MIAGQVLDINLAAEPK	1	0	Unmodified	1681.9073	0.90729217	111	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		21.267	21.267	2	0.0019352	15036	DP1063-9	120.87	89.441			NaN	NaN	NaN	0	0	Median	6085500	0	6085500	2069	111	1963	4801	10006;10007	10006		2	9606
MIDLSGNPVLR	0	1	Oxidation (M)	1229.6438	0.64380726	40	O14735	CDIPT	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	yes	yes	0	1	0	5	0					1	18.944	18.944	2	0.00063265	12296	DP1063-10	91.087	40.961			2.3004	1.6592	NaN	1	0	Median	5788100	1681200	4107000	2070	40	1964	4802	10008;10009	10008	40	2	9606
MIDMLAANSGR	0	1	2 Oxidation (M)	1209.5482	0.54819232	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	2	0	2	0		1				15.162	15.162	2	0.053196	6427	DP1063-7	86.882	44.594			NaN	NaN	NaN	0	0	Median	19003000	0	19003000	2071	436	1965	4803	10010	10010		1	9606
MIIEEAKR	1	1	Oxidation (M)	1004.5325	0.5324659	222	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	3	0			1			13.122	13.122	2	0.0055134	4361	DP1063-8	77.058	27.699			2.7047	2.7196	NaN	1	0	Median	17631000	5370000	12261000	2072	222	1966	4804	10011	10011	259	0	9606
MKEIAEAYLGK	2	0	Oxidation (M)	1267.6482	0.64822394	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			15.987	15.987	3	5.7612E-05	8059	DP1063-8	101.71	79.025			3.7721	3.6719	NaN	1	0	Median	39723000	7932600	31790000	2073	128	1967	4805	10012;10013	10013	143	2	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	1	1	Oxidation (M)	3275.6173	0.61726475	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			22.647	22.647	3	4.0754E-09	16480	DP1063-8	117.21	59.386			NaN	NaN	NaN	0	0	Median	95553000	0	95553000	2074	124	1968	4806	10014;10015;10016;10017;10018;10019	10015	136	6	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	1	1	Unmodified	3259.6224	0.62235013	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			23.001	23.001	3	0.0012724	16998	DP1063-8	67.235	47.994			NaN	NaN	NaN	0	0	Median	20849000	0	20849000	2075	124	1968	4807	10020;10021	10020		2	9606
MKETAENYLGHTAK	2	0	Oxidation (M)	1607.7614	0.76135622	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	2.5	0.5		1	1			13.872	13.872	3	0.00025468	5253	DP1063-8	130.66	115.22			1.7779	1.782	12.966	2	0	Median	52488000	17945000	34543000	2076	198	1969	4808;4809	10022;10023;10024	10023	224	3	9606
MKETPLSNCER	1	1	Oxidation (M)	1379.6173	0.61733452	340	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	1	1	3	0			2			13.15	13.15	2;3	0.0066287	4391	DP1063-8	136.52	85.322			NaN	NaN	NaN	0	0	Median	18954000	0	18954000	2077	340	1970	4810;4811	10025;10026;10027;10028	10027	405	4	9606
MKFNPFVTSDR	1	1	Oxidation (M)	1356.6496	0.64962092	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	1	1	5	0					1	17.101	17.101	3	0.00020174	9885	DP1063-10	91.123	72.313			7.6342	7.5342	NaN	1	0	Median	43162000	4787200	38375000	2078	255	1971	4812	10029;10030	10030	315	2	9606
MKGTLIDNQFK	2	0	Oxidation (M)	1309.67	0.67002202	518	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	1	1	4	0				1		15.798	15.798	2	0.054434	7687	DP1063-9	80.916	20.006			NaN	NaN	NaN	0	0	Median	0	0	0	2079	518	1972	4813	10031	10031		1	9606
MKHYEVEILDAK	2	0	Oxidation (M)	1490.7439	0.74391524	545	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	1	1	1	0	1					16.138	16.138	3	0.020927	6379	DP1063-6	48.277	18.218			1.6688	1.698	NaN	1	0	Median	9883900	3414800	6469100	2080	545	1973	4814	10032	10032	622	1	9606
MKLDYILGLK	2	0	Oxidation (M)	1208.6839	0.68388117	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	1	1	5	0					1	19.053	19.053	2	0.00013811	12431	DP1063-10	99.973	75.454			29.401	29.964	NaN	1	0	Median	60488000	2011900	58477000	2081	217	1974	4815	10033;10034	10034	257	2	9606
MKLNISFPATGCQK	2	0	Oxidation (M)	1609.7956	0.79563323	284	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	4	0				2		17.38	17.38	2	0.00054625	9800	DP1063-9	142.1	80.317			NaN	NaN	NaN	0	0	Median	0	0	0	2082	284	1975	4816;4817	10035;10036	10036	339	2	9606
MKPILLQGHER	1	1	Oxidation (M)	1336.7285	0.72853995	363	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	1	1	4	0				1		13.8	13.8	3	0.021771	4998	DP1063-9	99.752	75.056			NaN	NaN	NaN	0	0	Median	6594800	0	6594800	2083	363	1976	4818	10037	10037	462	1	9606
MKTPVQYSQQQNSPQK	2	0	Oxidation (M)	1906.9207	0.92071041	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2.5	0.5		1	1			13.579	13.579	3	0.0039395	4873	DP1063-8	114.29	64.137			NaN	NaN	NaN	0	0	Median	15329000	0	15329000	2084	211	1977	4819;4820	10038;10039;10040;10041	10041	241	4	9606
MKVELCSFSGYK	2	0	Oxidation (M)	1463.6789	0.67887214	321	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	1	5	0					2	17.061	17.061	2;3	2.8553E-05	9827	DP1063-10	142.1	119.41			5.0402	5.1366	5.6006	2	0	Median	49010000	9904900	39105000	2085	321	1978	4821;4822	10042;10043;10044;10045;10046	10044	387	5	9606
MLDMGFEPQIR	0	1	2 Oxidation (M)	1367.6214	0.62135726	148;469;36	Q92841;O15523;P17844;O00571	DDX17;DDX3Y;DDX5;DDX3X	Probable ATP-dependent RNA helicase DDX17;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;ATP-dependent RNA helicase DDX3X	no	no	0	2	0	3	0			1			18.273	18.273	2	0.023619	10931	DP1063-8	104.01	63.955			NaN	NaN	NaN	0	0	Median	29568000	0	29568000	2086	469;148;36	1979	4823	10047	10047	31;32	1	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	1	0	4	0				1		20.907	20.907	2	0.00038165	14515	DP1063-9	95.573	59.289			2.1267	2.1859	NaN	1	0	Median	23184000	8208500	14975000	2087	239	1980	4824	10048;10049;10050;10051	10049	294	4	9606
MLGTEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1380.6595	0.65951691	184	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	1	0	4	0				1		20.663	20.663	2	0.045811	14232	DP1063-9	56.043	10.046			NaN	NaN	NaN	0	0	Median	0	0	0	2088	184	1981	4825	10052	10052		1	9606
MLPTIIADNAGYDSADLVAQLR	0	1	Oxidation (M)	2362.1839	0.18386096	317	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	3	0			2			22.936	22.936	2;3	2.4103E-26	16956	DP1063-8	194.55	137.28			NaN	NaN	NaN	0	0	Median	6800200	0	6800200	2089	317	1982	4826;4827	10053;10054;10055	10054	381	3	9606
MLSALLTGVNR	0	1	Oxidation (M)	1189.6489	0.64889264	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				19.124	19.124	2	0.00064131	11879	DP1063-7	149.72	85.456			NaN	NaN	NaN	0	0	Median	22652000	0	22652000	2090	338	1983	4828	10056;10057	10056	403	2	9606
MLTMSVTLSPLR	0	1	2 Oxidation (M)	1379.7153	0.71525765	354	Q13023	AKAP6	A-kinase anchor protein 6	yes	yes	0	2	0	1	0	1					19.032	19.032	2	0.02338	10155	DP1063-6	100.02	28.325			NaN	NaN	NaN	0	0	Median	21443000	0	21443000	2091	354	1984	4829	10058	10058	411;412	1	9606
MLWENGINGILADEMGLGK	1	0	2 Oxidation (M)	2091.9969	0.99691182	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	2	0	2	0		1				22.694	22.694	2	0.0064791	16623	DP1063-7	107.14	76.59			NaN	NaN	NaN	0	0	Median	7420100	0	7420100	2092	532	1985	4830	10059	10059	605;606	1	9606
MMTLHQQCIR	0	1	2 Oxidation (M)	1348.605	0.60499569	378	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	2	0	2	0		1				13.364	13.364	3	0.0099334	4136	DP1063-7	94.692	65.393			NaN	NaN	NaN	0	0	Median	11211000	0	11211000	2093	378	1986	4831	10060	10060	471;472	1	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	2 Oxidation (M)	2881.2146	0.21458552	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.33	0.471	2	1				21.159	21.159	2;3	1.4385E-16	12766	DP1063-6	166.38	166.38			0.58605	0.59553	8.3805	2	0	Median	327210000	195030000	132180000	2094	355	1987	4832;4833;4834	10061;10062;10063;10064;10065;10066;10067;10068;10069;10070	10065	439;440	10	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	Oxidation (M)	2865.2197	0.2196709	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.563	21.563	3	3.1058E-21	13214	DP1063-6	171.39	171.39			0.69873	0.71636	NaN	1	0	Median	59882000	31700000	28183000	2095	355	1987	4835	10071;10072;10073;10074	10071	439;440	4	9606
MNDTVTIR	0	1	Acetyl (Protein N-term);Oxidation (M)	1006.4753	0.47534495	289	P62847	RPS24	40S ribosomal protein S24	yes	yes	1	1	0	5	0					1	16.895	16.895	2	0.00058329	9598	DP1063-10	97.798	66.509			8.2567	5.9552	NaN	1	0	Median	65975000	7678400	58297000	2096	289	1988	4836	10075;10076;10077;10078	10076	347	4	9606
MNVLADALK	1	0	Oxidation (M)	989.52157	0.52156686	268	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	1	0	5	0					1	18.218	18.218	2	0.00050854	11385	DP1063-10	96.668	38.064			4.1923	2.487	NaN	1	0	Median	39997000	7501000	32496000	2097	268	1989	4837	10079;10080;10081;10082	10081	324	4	9606
MPAISMSMLEQFLK	1	0	Oxidation (M)	1640.7976	0.79760707	590				yes	yes	0	1	0	2	0		1				23.514	23.514	2	0.012146	17666	DP1063-7	100.25	55.946	+		NaN	NaN	NaN	0	0	Median	250440000	0	250440000	2098	590	1990	4838	10083;10084	10084	643	2	9606
MPCESSPPESADTPTSTR	0	1	Oxidation (M)	1964.8092	0.80917063	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1.5	0.5	1	1				14.592	14.592	2	2.0956000000000002E-33	5685	DP1063-7	225.33	189.01			NaN	NaN	NaN	0	0	Median	14495000	0	14495000	2099	211	1991	4839;4840	10085;10086;10087;10088;10089	10089	242	5	9606
MPCQSLQPEPINTPTHTK	1	0	Oxidation (M)	2093.9874	0.98740976	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1.5	0.5	2	2				15.609	15.609	2;3	6.2245E-34	7129	DP1063-7	228.17	190.17			NaN	NaN	NaN	0	0	Median	72607000	0	72607000	2100	211	1992	4841;4842;4843;4844	10090;10091;10092;10093;10094;10095;10096;10097	10097	243	8	9606
MPCQSLQPEPINTPTHTK	1	0	Unmodified	2077.9925	0.99249514	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.317	16.317	3	0.042845	8121	DP1063-7	67.153	51.639			NaN	NaN	NaN	0	0	Median	12367000	0	12367000	2101	211	1992	4845	10098	10098		1	9606
MPCTEDYLSLILNR	0	1	Oxidation (M)	1739.8222	0.82224192	12	CON__P02769			yes	yes	0	1	0	2.61	1.36	19	14	2	24	2	28.804	28.804	2;3	9.3475E-103	17257	DP1063-7	294.15	231.69		+	NaN	NaN	NaN	0	0	Median	7652899999.999999	7652899999.999999	0	2102	12	1993	4846;4847;4848;4849;4850;4851;4852;4853;4854;4855;4856;4857;4858;4859;4860;4861;4862;4863;4864;4865;4866;4867;4868;4869;4870;4871;4872;4873;4874;4875;4876;4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900;4901;4902;4903;4904;4905;4906	10099;10100;10101;10102;10103;10104;10105;10106;10107;10108;10109;10110;10111;10112;10113;10114;10115;10116;10117;10118;10119;10120;10121;10122;10123;10124;10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135;10136;10137;10138;10139;10140;10141;10142;10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155;10156;10157;10158;10159;10160;10161;10162;10163;10164;10165;10166;10167;10168;10169;10170;10171;10172;10173;10174;10175;10176;10177;10178;10179;10180;10181;10182;10183;10184;10185;10186;10187;10188;10189;10190;10191;10192;10193;10194;10195;10196;10197;10198;10199;10200;10201;10202;10203;10204;10205;10206;10207;10208;10209;10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221;10222;10223	10137	6	125	
MPCTEDYLSLILNR	0	1	Unmodified	1723.8273	0.82732729	12	CON__P02769			yes	yes	0	0	0	2.45	0.63	1	22	15	2		28.303	28.303	2;3	1.748E-153	17936	DP1063-8	373.4	325.55		+	NaN	NaN	NaN	0	0	Median	1960799999.9999998	1960799999.9999998	0	2103	12	1993	4907;4908;4909;4910;4911;4912;4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936;4937;4938;4939;4940;4941;4942;4943;4944;4945;4946	10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239;10240;10241;10242;10243;10244;10245;10246;10247;10248;10249;10250;10251;10252;10253;10254;10255;10256;10257;10258;10259;10260;10261;10262;10263;10264;10265;10266;10267;10268;10269;10270;10271;10272;10273;10274	10252		51	
MPVIKPDIANWELSVK	2	0	Oxidation (M)	1854.9914	0.99135615	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2.33	0.471		2	1			20.125	20.125	2;3	4.3733E-11	13232	DP1063-7	172.09	172.09			0.81743	0.79573	10.34	3	0	Median	220540000	111210000	109330000	2104	94	1994	4947;4948;4949	10275;10276;10277;10278;10279;10280;10281	10275	90	7	9606
MPVIKPDIANWELSVK	2	0	Unmodified	1838.9964	0.99644153	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2	0		1				20.967	20.967	3	1.1402E-06	14419	DP1063-7	157.07	157.07			0.97837	1.0096	NaN	1	0	Median	38148000	18165000	19983000	2105	94	1994	4950	10282;10283;10284;10285	10283		4	9606
MQASIEKGGSLPK	2	0	Oxidation (M)	1360.7021	0.70205043	105	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	4	0				1		14.011	14.011	2	0.009722	5244	DP1063-9	113.61	64.628			NaN	NaN	NaN	0	0	Median	8924300	0	8924300	2106	105	1995	4951	10286;10287	10286	111	2	9606
MQGSLEAHVNGFR	0	1	Oxidation (M)	1460.683	0.68304632	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	1	0	1					16.118	16.118	3	0.00086353	6319	DP1063-6	116.03	85.462			NaN	NaN	NaN	0	0	Median	7642100	0	7642100	2107	585	1996	4952	10288;10289	10289	636	2	9606
MQLDNPSK	1	0	Unmodified	931.44332	0.44331654	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.716	14.716	2	3.0953E-06	4566	DP1063-6	151.29	90.998			0.8725	0.89003	NaN	1	0	Median	92349000	47669000	44680000	2108	355	1997	4953	10290;10291;10292;10293	10293		4	9606
MQQENMKPQEQLTLEPYER	1	1	2 Oxidation (M)	2423.1097	0.10970974	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	2	1	4	0				1		17.092	17.092	3	0.043053	9373	DP1063-9	59.733	34.58			NaN	NaN	NaN	0	0	Median	0	0	0	2109	160	1998	4954	10294	10294		1	9606
MREIVHLQAGQCGNQIGAK	1	1	Unmodified	2109.0572	0.057161084	311	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	1	3	0			1			15.901	15.901	4	1.3662E-05	7997	DP1063-8	108.77	0			3.285	3.3031	NaN	1	0	Median	30839000	8621300	22218000	2110	311	1999	4955	10295;10296	10296		2	9606
MRPLTEEETR	0	2	Oxidation (M)	1276.6082	0.60815004	564	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	1	1	5	0					1	13.157	13.157	3	0.013067	5193	DP1063-10	111.86	62.857			NaN	NaN	NaN	0	0	Median	8560500	0	8560500	2111	564	2000	4956	10297;10298	10298	625	2	9606
MSAAMRERFDR	0	3	Acetyl (Protein N-term);2 Oxidation (M)	1442.6395	0.63946694	329	Q00765	REEP5	Receptor expression-enhancing protein 5	yes	yes	1	2	2	1	0	2					25.523	25.523	2	0.022536	8304	DP1063-6	64.654	14.546			NaN	NaN	NaN	0	0	Median	0	0	0	2112	329	2001	4957;4958	10299;10300	10299	392;393	2	9606
MSATFIGNSTAIQELFK	1	0	Oxidation (M)	1872.9291	0.92914983	311;373	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	4	0.816			1	1	1	22.868	22.868	2	4.1052E-91	16822	DP1063-8	281.32	20.821			3.5972	3.6599	10.098	2	0	Median	247560000	47854000	199710000	2113	311;373	2002	4959;4960;4961	10301;10302;10303;10304;10305;10306;10307;10308;10309;10310;10311	10305	372	11	9606
MSATFIGNSTAIQELFKR	1	1	Oxidation (M)	2029.0303	0.030260856	311;373	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	1	4	0				1		21.449	21.449	3	0.019119	15268	DP1063-9	82.877	6.9067			NaN	NaN	NaN	0	0	Median	8010600	0	8010600	2114	311;373	2003	4962	10312;10313	10312	372	2	9606
MSFGEIEEDAYQEDLGFSLGHLGK	1	0	Oxidation (M)	2687.2061	0.20611255	462	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	1	0	3	0			1			22.655	22.655	3	0.02446	16606	DP1063-8	57.152	38.108			NaN	NaN	NaN	0	0	Median	5621700	0	5621700	2115	462	2004	4963	10314	10314	543	1	9606
MSFSSNLNHYGMTHVASVSDVLLDNSFTPPCQR	0	1	2 Oxidation (M)	3742.6814	0.6814147	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	2					20.656	20.656	3;4	1.3727E-22	12046	DP1063-6	125.42	116.58			0.84144	0.85047	2.6916	2	0	Median	491910000	262290000	229620000	2116	355	2005	4964;4965	10315;10316;10317;10318;10319;10320;10321;10322;10323	10315	441;442	9	9606
MSGECAPNVSVSVSTSHTTISGGGSR	0	1	Oxidation (M)	2580.1544	0.1544281	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	2	1	1		1			16.407	16.407	3	2.5366999999999996E-65	8553	DP1063-8	241.44	211.35		+	NaN	NaN	NaN	0	0	Median	114840000	114840000	0	2117	88	2006	4966;4967	10324;10325;10326;10327;10328;10329	10328	75	6	9606
MSGECAPNVSVSVSTSHTTISGGGSR	0	1	Unmodified	2564.1595	0.15951348	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	0			1			16.745	16.745	3	0.011149	9071	DP1063-8	64.27	37.918		+	NaN	NaN	NaN	0	0	Median	19244000	19244000	0	2118	88	2006	4968	10330	10330		1	9606
MSGGWELELNGTEAK	1	0	Oxidation (M)	1636.7403	0.74028642	343	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	1	0	5	0					1	19.489	19.489	2	1.0143E-20	13021	DP1063-10	213.84	178.35			NaN	NaN	NaN	0	0	Median	15375000	0	15375000	2119	343	2007	4969	10331;10332	10332	407	2	9606
MSMKEVDEQMLNVQNK	2	0	3 Oxidation (M)	1970.8747	0.87474777	311;109;373	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	3	1	3.5	0.5			2	2		14.507	14.507	2;3	2.4896E-17	6106	DP1063-8	194.12	172.37			4.1827	4.0717	8.1362	2	0	Median	155920000	27232000	128690000	2120	109;311;373	2008	4970;4971;4972;4973	10333;10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344	10338	115;122;123	12	9606
MSQVAPSLSALIGEAVGAR	0	1	Oxidation (M)	1871.9775	0.977497	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	3	0			1			23.716	23.716	2	2.5567E-06	17893	DP1063-8	144.8	116			NaN	NaN	NaN	0	0	Median	23851000	0	23851000	2121	35	2009	4974	10345;10346	10346	26	2	9606
MSTSPEAFLALR	0	1	Oxidation (M)	1337.6649	0.66493664	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.46	20.46	2	0.0064565	11876	DP1063-6	121.5	69.247			NaN	NaN	NaN	0	0	Median	7837700	0	7837700	2122	318	2010	4975	10347	10347	383	1	9606
MSVDAVEIETLR	0	1	Oxidation (M)	1377.681	0.68098063	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	0	2	0		1				18.884	18.884	2	0.032505	11582	DP1063-7	84.198	8.028			NaN	NaN	NaN	0	0	Median	0	0	0	2123	316	2011	4976	10348	10348		1	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Oxidation (M)	2242.2031	0.20313984	105	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.06	0.776	1	1		24	7	31.834	31.834	2;3	7.166E-53	24926	DP1063-9	244	201.44			76.751	80.284	NaN	1	0	Median	1587899999.9999998	23042000	1564799999.9999998	2124	105	2012	4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001;5002;5003;5004;5005;5006;5007;5008;5009	10349;10350;10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413;10414;10415;10416;10417	10381	112	69	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Unmodified	2226.2082	0.20822522	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		23.812	23.812	3	4.4798E-06	18174	DP1063-9	138.82	121.46			NaN	NaN	NaN	0	0	Median	13541000	0	13541000	2125	105	2012	5010	10418;10419	10419		2	9606
MTDQEAIQDLWQWR	0	1	Oxidation (M)	1834.8308	0.83083277	105	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	3.83	0.687		1	1	9	1	29.607	29.607	2	5.8742E-139	17035	DP1063-9	326.85	326.85			91.559	95.774	NaN	1	0	Median	1559599999.9999998	17844000	1541799999.9999998	2126	105	2013	5011;5012;5013;5014;5015;5016;5017;5018;5019;5020;5021;5022	10420;10421;10422;10423;10424;10425;10426;10427;10428;10429;10430;10431;10432;10433;10434;10435;10436;10437;10438;10439;10440;10441;10442;10443;10444;10445;10446;10447;10448;10449;10450	10424	113	31	9606
MTDQEAIQDLWQWR	0	1	Unmodified	1818.8359	0.83591814	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				5		24.08	24.08	2;3	9.816799999999999E-96	18031	DP1063-9	318.83	241.08			NaN	NaN	NaN	0	0	Median	121080000	0	121080000	2127	105	2013	5023;5024;5025;5026;5027	10451;10452;10453;10454;10455;10456;10457	10451		7	9606
MTEWETAAPAVAETPDIK	1	0	Acetyl (Protein N-term);Oxidation (M)	2016.935	0.93502307	218	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	1	0	5	0					1	21.62	21.62	2	0.00025503	15779	DP1063-10	120.14	87.977			NaN	NaN	NaN	0	0	Median	4875800	0	4875800	2128	218	2014	5028	10458;10459	10459	258	2	9606
MTLDDFR	0	1	Unmodified	896.4062	0.40620276	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0			1			18.975	18.975	2	0.032931	11838	DP1063-8	97.473	60.916		+	NaN	NaN	NaN	0	0	Median	0	0	0	2129	19	2015	5029	10460	10460		1	9606
MTVPISITNPDLLR	0	1	Oxidation (M)	1584.8545	0.85452832	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.692	20.692	2	3.0244E-06	12178	DP1063-6	158.41	141.83			0.77511	0.81269	NaN	1	0	Median	8160600	4274600	3886100	2130	38	2016	5030	10461;10462	10461	39	2	9606
MVAAVACAQVPK	1	0	Oxidation (M)	1259.6366	0.6366134	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		15.745	15.745	2	2.3402E-07	7688	DP1063-8	166.3	96.24			1.0055	1.023	2.17	2	0	Median	664060000	333400000	330660000	2131	524	2017	5031;5032	10463;10464;10465;10466	10464	595	4	9606
MVAAVACAQVPK	1	0	Unmodified	1243.6417	0.64169877	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.662	16.662	2	5.7873E-05	8934	DP1063-8	144.12	113.05			1.0331	1.0405	NaN	1	0	Median	281460000	147960000	133490000	2132	524	2017	5033;5034	10467;10468;10469;10470	10468		4	9606
MVEMQKDPMEPPR	1	1	3 Oxidation (M)	1634.7102	0.71024862	367	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	3	1	3	0			1			12.915	12.915	3	0.0032266	4103	DP1063-8	99.011	68.675			NaN	NaN	NaN	0	0	Median	5590700	0	5590700	2133	367	2018	5035	10471;10472	10472	467;468;469	2	9606
MVNHFIAEFK	1	0	Oxidation (M)	1250.6118	0.61177885	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			17.371	17.371	2	0.01271	9836	DP1063-8	117.01	61.95			NaN	NaN	NaN	0	0	Median	97933000	0	97933000	2134	128	2019	5036	10473;10474;10475	10475	144	3	9606
MVPAGMGAGLER	0	1	2 Oxidation (M)	1219.5689	0.56892776	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	1		1		1		14.646	14.646	2	0.003093	5789	DP1063-7	72.243	43.285			0.96499	0.99827	13.164	2	0	Median	66174000	33205000	32969000	2135	236	2020	5037;5038	10476;10477;10478;10479;10480	10477	287;288	5	9606
MVQEAEKYKAEDEK	3	0	Oxidation (M)	1712.7927	0.79271593	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	2	3	0			1			12.72	12.72	3	0.00037884	3872	DP1063-8	122.1	86.205			NaN	NaN	NaN	0	0	Median	0	0	0	2136	128	2021	5039	10481	10481	145	1	9606
MVQEAEKYKAEDEVQR	2	1	Oxidation (M)	1967.9259	0.92585536	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	2	3	0			2			13.991	13.991	2;3	1.9735000000000002E-24	5384	DP1063-8	203.27	203.27			4.6893	4.846	NaN	1	0	Median	91090000	15640000	75450000	2137	124	2022	5040;5041	10482;10483;10484;10485;10486;10487;10488;10489	10483	137	8	9606
MVQEAEKYKAEDEVQR	2	1	Unmodified	1951.9309	0.93094074	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			14.573	14.573	3	0.01068	6271	DP1063-8	65.511	65.511			4.3103	4.4544	NaN	1	0	Median	21353000	3439800	17914000	2138	124	2022	5042	10490	10490		1	9606
MVVPAALK	1	0	Oxidation (M)	843.48881	0.48881017	203	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	1	0	5	0					1	15.736	15.736	2	0.013872	8215	DP1063-10	74.439	47.642			10.154	6.0237	NaN	1	0	Median	117830000	12765000	105070000	2139	203	2023	5043	10491	10491	229	1	9606
MWVQLLIPR	0	1	Oxidation (M)	1170.6583	0.65833512	256	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	1	0	4	0				1		21.983	21.983	2	0.029289	15927	DP1063-9	94.662	62.902			NaN	NaN	NaN	0	0	Median	2818400	0	2818400	2140	256	2024	5044	10492	10492	318	1	9606
NAADPISGDFKEISSVK	2	0	Unmodified	1776.8894	0.8893935	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				18.891	18.891	3	0.0032801	11643	DP1063-7	95.767	63.237			NaN	NaN	NaN	0	0	Median	26516000	0	26516000	2141	211	2025	5045	10493;10494	10494		2	9606
NAAPPPSNTEAPPGETR	0	1	Unmodified	1704.8067	0.80672651	513	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				14.187	14.187	2	0.0026945	5208	DP1063-7	100.73	58.485			NaN	NaN	NaN	0	0	Median	0	0	0	2142	513	2026	5046	10495	10495		1	9606
NACDHLSGFNVCNR	0	1	Unmodified	1662.6991	0.69910709	576	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	16.645	16.645	3	0.0085859	9289	DP1063-10	88.075	65.921			NaN	NaN	NaN	0	0	Median	5336400	0	5336400	2143	576	2027	5047	10496;10497	10496		2	9606
NAEPDEQDFEK	1	0	Unmodified	1320.547	0.54698957	378	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				15.605	15.605	2	0.00020006	7100	DP1063-7	152.97	129.6			NaN	NaN	NaN	0	0	Median	11645000	0	11645000	2144	378	2028	5048	10498;10499	10498		2	9606
NAHSATTWSGQYVGGAEAR	0	1	Unmodified	1961.898	0.89800113	28	CON__Streptavidin			yes	yes	0	0	0	4.82	0.719	1	1		2	45	24.634	24.634	2;3;4	6.9483E-263	9651	DP1063-10	376.6	318.72		+	NaN	NaN	NaN	0	0	Median	29307000000	29307000000	0	2145	28	2029	5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063;5064;5065;5066;5067;5068;5069;5070;5071;5072;5073;5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096;5097	10500;10501;10502;10503;10504;10505;10506;10507;10508;10509;10510;10511;10512;10513;10514;10515;10516;10517;10518;10519;10520;10521;10522;10523;10524;10525;10526;10527;10528;10529;10530;10531;10532;10533;10534;10535;10536;10537;10538;10539;10540;10541;10542;10543;10544;10545;10546;10547;10548;10549;10550;10551;10552;10553;10554;10555;10556;10557;10558;10559;10560;10561;10562;10563;10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576;10577;10578;10579;10580;10581;10582;10583;10584;10585;10586;10587;10588;10589;10590;10591;10592;10593;10594;10595;10596;10597;10598;10599;10600;10601;10602;10603;10604;10605	10564		106	
NALESYAFNMK	1	0	Oxidation (M)	1302.5914	0.59143734	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			18.341	18.341	2	2.2945E-05	10953	DP1063-8	125.71	125.71			4.7588	4.7929	NaN	1	0	Median	352790000	63476000	289320000	2146	124	2030	5098	10606;10607	10607	138	2	9606
NALESYAFNMK	1	0	Unmodified	1286.5965	0.59652272	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			19.777	19.777	2	0.00059105	12861	DP1063-8	147.51	94.722			NaN	NaN	NaN	0	0	Median	61480000	0	61480000	2147	124	2030	5099	10608;10609	10609		2	9606
NALLQLTDSQIADVAR	0	1	Unmodified	1726.9214	0.92136233	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					21.639	21.639	2	3.4483E-17	13374	DP1063-6	189.3	139.37			NaN	NaN	NaN	0	0	Median	3709800	0	3709800	2148	71	2031	5100	10610;10611	10610		2	9606
NAPVTFIVDGAVVK	1	0	Unmodified	1428.7977	0.79766537	518	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		20.41	20.41	2	0.017966	13903	DP1063-9	89.561	50.256			NaN	NaN	NaN	0	0	Median	21979000	0	21979000	2149	518	2032	5101	10612;10613	10612		2	9606
NAVITVPAYFNDSQR	0	1	Unmodified	1693.8424	0.84238373	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				20.286	20.286	2	0.0025888	13458	DP1063-7	94.82	94.82			2.294	2.3678	NaN	1	0	Median	32375000	11910000	20465000	2150	198	2033	5102	10614;10615;10616	10614		3	9606
NAVSVHSNLNSEAVMK	1	0	Oxidation (M)	1714.8308	0.83083277	421	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	1	0	2	0		1				14.76	14.76	3	0.019425	5975	DP1063-7	71.98	45.832			NaN	NaN	NaN	0	0	Median	9190600	0	9190600	2151	421	2034	5103	10617	10617	522	1	9606
NAVWALSNLCR	0	1	Unmodified	1302.6503	0.65028963	238;59	P52294;O15131;O60684	KPNA1;KPNA5;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-6;Importin subunit alpha-7	no	no	0	0	0	3	0			2			20.636	20.636	2	0.0063915	14047	DP1063-8	126.31	81.291			NaN	NaN	NaN	0	0	Median	5937800	0	5937800	2152	238;59	2035	5104;5105	10618;10619	10618		2	9606
NCISTVVHQGLIR	0	1	Unmodified	1495.7929	0.79293112	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.831	17.831	2	0.03232	8431	DP1063-6	83	35.156			NaN	NaN	NaN	0	0	Median	0	0	0	2153	318	2036	5106	10620	10620		1	9606
NCIVLIDSTPYR	0	1	Unmodified	1449.7286	0.72859953	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.631	19.631	2	5.7262E-09	13172	DP1063-10	202.2	169.88			NaN	NaN	NaN	0	0	Median	35672000	0	35672000	2154	267	2037	5107	10621;10622	10621		2	9606
NCLTNFHGMDLTR	0	1	Oxidation (M)	1593.7028	0.70279548	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		16.81	16.81	3	0.003709	8942	DP1063-9	63.091	50.251			8.4323	8.8205	NaN	1	0	Median	89077000	8988000	80089000	2155	254	2038	5108	10623;10624	10623	313	2	9606
NCLTNFHGMDLTR	0	1	Unmodified	1577.7079	0.70788086	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.5	18.5	3	0.0039601	11317	DP1063-9	102.73	76.002			NaN	NaN	NaN	0	0	Median	10178000	0	10178000	2156	254	2038	5109	10625;10626	10625		2	9606
NDADEKHPEHAEQNIR	1	1	Unmodified	1901.8616	0.86161562	424	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3	0			2			12.577	12.577	3;4	2.9949E-07	3681	DP1063-8	155.09	118.8			NaN	NaN	NaN	0	0	Median	24321000	0	24321000	2157	424	2039	5110;5111	10627;10628;10629	10628		3	9606
NDEELNKLLGK	2	0	Unmodified	1271.6721	0.67213051	122	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	yes	no	0	0	1	5	0					2	18.164	18.164	2;3	3.8206E-15	11263	DP1063-10	185.33	113.88			3.4147	3.48	6.1467	2	0	Median	167790000	40972000	126820000	2158	122	2040	5112;5113	10630;10631;10632;10633	10631		4	9606
NDEELNKLLGR	1	1	Unmodified	1299.6783	0.67827852	91	Q93077;Q7L7L0;P04908	HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	yes	no	0	0	1	5	0					2	18.56	18.56	2;3	0.00072077	11814	DP1063-10	88.134	45.923			3.0038	2.9644	15.138	2	0	Median	51490000	13206000	38284000	2159	91	2041	5114;5115	10634;10635;10636	10635		2	9606
NDLAVVDVR	0	1	Unmodified	999.53491	0.53490874	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				17.952	17.952	2	0.042498	10490	DP1063-7	63.216	9.6618			1.3509	1.382	NaN	1	0	Median	57189000	24567000	32622000	2160	155	2042	5116	10637	10637		1	9606
NDLSPASSGNAVYDFFIGR	0	1	Unmodified	2028.9541	0.95411902	384	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	2	1	1		1			23.896	23.896	2	1.4653E-40	18097	DP1063-8	229.9	203.24			NaN	NaN	NaN	0	0	Median	38315000	0	38315000	2161	384	2043	5117;5118	10638;10639;10640;10641	10640		4	9606
NDTKEDVFVHQTAIK	2	0	Unmodified	1743.8792	0.87916317	306;144	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	1	4	0				3		15.595	15.595	2;3;4	5.3601E-30	7402	DP1063-9	229.9	173.85			8.4803	8.9709	NaN	1	0	Median	127550000	11354000	116200000	2162	144;306	2044	5119;5120;5121	10642;10643;10644;10645;10646;10647	10645		6	9606
NDTKEDVFVHQTAIKK	3	0	Unmodified	1871.9741	0.97412619	306;144	P16989;P67809	YBX3;YBX1	Y-box-binding protein 3;Nuclease-sensitive element-binding protein 1	no	no	0	0	2	3.67	0.471			1	2		14.503	14.503	3;4	0.0021241	5946	DP1063-9	67.646	47.553			12.904	13.707	NaN	1	0	Median	61067000	5644800	55422000	2163	144;306	2045	5122;5123;5124	10648;10649;10650;10651;10652	10650		5	9606
NECFLSHK	1	0	Unmodified	1033.4651	0.46511462	12	CON__P02769			yes	yes	0	0	0	2.33	1.25	1	1		1		14.269	14.269	2	0.0021072	4000	DP1063-6	127.46	60.427		+	NaN	NaN	NaN	0	0	Median	103220000	103220000	0	2164	12	2046	5125;5126;5127	10653;10654;10655;10656	10654		4	
NECFLSHKDDSPDLPK	2	0	Unmodified	1900.8625	0.86252683	12	CON__P02769			yes	yes	0	0	1	2.64	1.07	2	3	3	3		16.235	16.235	2;3;4	1.18E-30	7977	DP1063-7	236.4	192.5		+	NaN	NaN	NaN	0	0	Median	3903199999.9999995	3903199999.9999995	0	2165	12	2047	5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138	10657;10658;10659;10660;10661;10662;10663;10664;10665;10666;10667;10668;10669;10670;10671;10672;10673;10674;10675;10676;10677;10678	10665		22	
NEDEDSPNKLYTLVTYVPVTTFK	2	0	Unmodified	2672.3221	0.32212858	294	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	1	5	0					1	22.651	22.651	3	8.2046E-07	16993	DP1063-10	98.973	98.973			3.8256	3.8988	NaN	1	0	Median	13749000	3629700	10120000	2166	294	2048	5139	10679;10680	10679		2	9606
NEEPSEEEIDAPKPK	2	0	Unmodified	1710.7948	0.79482442	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		2				14.895	14.895	2;3	1.0728E-15	6147	DP1063-7	186.17	144.72			NaN	NaN	NaN	0	0	Median	35782000	0	35782000	2167	531	2049	5140;5141	10681;10682;10683;10684	10681		4	9606
NEGNIFPNPEATFVK	1	0	Unmodified	1675.8206	0.82058566	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					20.789	20.789	2	0.0013196	12263	DP1063-6	125.82	87.823			NaN	NaN	NaN	0	0	Median	10598000	0	10598000	2168	585	2050	5142	10685;10686	10685		2	9606
NEGSESAPEGQAQQR	0	1	Unmodified	1586.6921	0.69209068	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		12.833	12.833	2	3.2394E-05	3869	DP1063-9	145.28	107.68			NaN	NaN	NaN	0	0	Median	5692700	0	5692700	2169	306	2051	5143	10687;10688	10687		2	9606
NELESYAYSLK	1	0	Unmodified	1315.6296	0.62959699	127	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	2	0		1				19.418	19.418	2	0.013317	12341	DP1063-7	104.05	46.449			NaN	NaN	NaN	0	0	Median	9404400	0	9404400	2170	127	2052	5144	10689;10690;10691;10692	10690		4	9606
NENQLIIFADDTYPR	0	1	Unmodified	1807.8741	0.87407779	402	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					21.803	21.803	2	0.0016413	13595	DP1063-6	123.64	65.467			NaN	NaN	NaN	0	0	Median	2166500	0	2166500	2171	402	2053	5145	10693;10694	10693		2	9606
NEYSLTGLCNR	0	1	Unmodified	1325.6034	0.60339901	507	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		17.989	17.989	2	0.00043276	10625	DP1063-9	149.72	94.19			NaN	NaN	NaN	0	0	Median	10544000	0	10544000	2172	507	2054	5146	10695;10696	10695		2	9606
NFAAESFTFLMR	0	1	Oxidation (M)	1448.6758	0.67583567	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					21.88	21.88	2	0.014121	13723	DP1063-6	105.4	60.533			NaN	NaN	NaN	0	0	Median	8014400	0	8014400	2173	73	2055	5147	10697	10697	65	1	9606
NFDLTAIPCANHK	1	0	Unmodified	1499.7191	0.71909747	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.465	18.465	2;3	4.0206E-10	9214	DP1063-6	208.11	182.05			0.89133	0.90924	8.1911	3	0	Median	471340000	241020000	230320000	2174	355	2056	5148;5149;5150	10698;10699;10700;10701;10702;10703;10704;10705;10706;10707;10708;10709	10703		12	9606
NFGIGQDIQPK	1	0	Unmodified	1215.6248	0.62478638	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		18.009	18.009	2	0.0073776	10565	DP1063-9	120.31	91.509			NaN	NaN	NaN	0	0	Median	124130000	0	124130000	2175	280	2057	5151	10710;10711	10710		2	9606
NFGIWLR	0	1	Unmodified	904.49192	0.49192172	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	21.264	21.264	2	0.026673	15272	DP1063-10	75.311	54.756			12.241	8.8292	NaN	1	0	Median	39354000	2162700	37191000	2176	335	2058	5152	10712;10713	10712		2	9606
NFILDQTNVSAAAQR	0	1	Unmodified	1646.8376	0.8376327	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				19.203	19.203	2	4.7293999999999995E-58	12005	DP1063-7	253.71	253.71			3.7322	3.7797	NaN	1	0	Median	109540000	23067000	86473000	2177	330	2059	5153	10714;10715;10716;10717	10715		4	9606
NFLPILFNLYGQPVAAGDTPAPR	0	1	Unmodified	2470.3009	0.30088005	420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		2				25.031	25.031	2	9.098E-22	19576	DP1063-7	180.62	145.8			NaN	NaN	NaN	0	0	Median	4243400	0	4243400	2178	420	2060	5154;5155	10718;10719;10720	10718		3	9606
NFYFLEMNTR	0	1	Oxidation (M)	1349.6074	0.60742176	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2	0		1				20.501	20.501	2	0.0097662	13793	DP1063-7	72.325	45.883			1.0264	1.0498	NaN	1	0	Median	58172000	27529000	30644000	2179	94	2061	5156	10721;10722	10721	86	2	9606
NFYFLEMNTR	0	1	Unmodified	1333.6125	0.61250714	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			21.832	21.832	2	8.0389E-05	15567	DP1063-8	123.21	86.651			0.93135	0.96555	28.453	2	0	Median	29383000	15589000	13794000	2180	94	2061	5157;5158	10723;10724;10725;10726;10727;10728;10729	10729		7	9606
NFYQEHPDLAR	0	1	Unmodified	1388.6473	0.64731274	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			16.235	16.235	3	0.00014731	8381	DP1063-8	112.13	101.48			10.296	10.668	NaN	1	0	Median	120500000	14495000	106010000	2181	148	2062	5159	10730;10731	10730		2	9606
NGIAFMGPPSQAMWALGDK	1	0	2 Oxidation (M)	2021.9339	0.93391763	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.634	20.634	2	4.4238E-05	12038	DP1063-6	132.44	132.44			0.82517	0.84175	NaN	1	0	Median	57729000	31662000	26067000	2182	355	2063	5160	10732;10733;10734;10735	10733	443;444	4	9606
NGIAFMGPPSQAMWALGDK	1	0	Oxidation (M)	2005.939	0.93900301	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.818	21.818	2	2.1648E-05	13603	DP1063-6	143.38	143.38			0.86154	0.87885	NaN	1	0	Median	18988000	9895400	9092600	2183	355	2063	5161	10736;10737;10738;10739	10737	443;444	4	9606
NGIDILVGTPGR	0	1	Unmodified	1210.667	0.66698555	531;490	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	2	0		1				19.802	19.802	2	0.00045084	12861	DP1063-7	143.5	56.832			NaN	NaN	NaN	0	0	Median	40021000	0	40021000	2184	531;490	2064	5162	10740;10741	10741		2	9606
NGSFGVLVATNVAAR	0	1	Unmodified	1474.7892	0.78922595	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				19.709	19.709	2	0.00086054	12757	DP1063-7	131.12	94.588			NaN	NaN	NaN	0	0	Median	23417000	0	23417000	2185	531	2065	5163	10742;10743	10743		2	9606
NGTQVHGTITGVDVSMNTHLK	1	0	Oxidation (M)	2224.0906	0.090629281	277	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	1	0	5	0					1	15.793	15.793	3	0.00053238	8288	DP1063-10	105.95	66.56			NaN	NaN	NaN	0	0	Median	7248900	0	7248900	2186	277	2066	5164	10744	10744	331	1	9606
NGYGFINR	0	1	Unmodified	939.45626	0.45626449	306;144	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	0	4	0				1		17.217	17.217	2	0.0047356	9539	DP1063-9	91.041	80.627			9.5278	9.9665	NaN	1	0	Median	43114000	3638300	39476000	2187	144;306	2067	5165	10745;10746	10745		2	9606
NHDHQEIAVPVANLK	1	0	Unmodified	1683.8693	0.86926718	70	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	5	0					1	16.192	16.192	2	5.278799999999999E-50	8796	DP1063-10	263.89	200.68			NaN	NaN	NaN	0	0	Median	15820000	0	15820000	2188	70	2068	5166	10747;10748	10748		2	9606
NHEEEMKDLR	1	1	Unmodified	1299.5877	0.58774895	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	0.816		1	1	1		13.329	13.329	3	0.00057493	4608	DP1063-8	140.49	104.04		+	NaN	NaN	NaN	0	0	Median	25322000	25322000	0	2189	16	2069	5167;5168;5169	10749;10750;10751;10752	10751		4	9606
NHKEEMSQLTGQNSGDVNVEINVAPGK	2	0	Oxidation (M)	2910.3778	0.37776276	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	3	0			1			16.518	16.518	4	0.02225	8817	DP1063-8	48.115	22.788		+	NaN	NaN	NaN	0	0	Median	17378000	17378000	0	2190	19	2070	5170	10753	10753	12	1	9606
NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK	3	0	Oxidation (M)	3367.6314	0.63141126	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	2	3	0			1			16.846	16.846	3	6.6903E-07	9237	DP1063-8	92.089	69.101		+	NaN	NaN	NaN	0	0	Median	18523000	18523000	0	2191	19	2071	5171	10754	10754	12	1	9606
NHPGLLLMDTTFR	0	1	Oxidation (M)	1529.766	0.76604767	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.707	1	2	1			18.521	18.521	2;3	9.3069E-05	11016	DP1063-7	130.15	130.15			0.89735	0.88779	18.719	4	0	Median	1100000000	574940000	525070000	2192	130	2072	5172;5173;5174;5175	10755;10756;10757;10758;10759;10760;10761;10762;10763;10764;10765;10766	10758	163	12	9606
NHPGLLLMDTTFR	0	1	Unmodified	1513.7711	0.77113304	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				20.069	20.069	3	1.3283999999999998E-23	13180	DP1063-7	211.22	211.22			0.96259	0.96666	NaN	1	0	Median	188460000	96236000	92225000	2193	130	2072	5176	10767;10768;10769;10770	10768		4	9606
NIALDKTDDSNPR	1	1	Unmodified	1457.711	0.71103521	539	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	1	2	0		1				14.418	14.418	2	0.037762	5520	DP1063-7	104.07	22.12			NaN	NaN	NaN	0	0	Median	0	0	0	2194	539	2073	5177	10771	10771		1	9606
NIAQIAVVMGSCTAGGAYVPAMADENIIVR	0	1	2 Oxidation (M)	3122.5199	0.51987566	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	2	0	3	0			1			21.237	21.237	3	3.7206E-15	14703	DP1063-8	116.6	116.6			0.87941	0.91121	NaN	1	0	Median	208870000	87295000	121580000	2195	524	2074	5178	10772;10773	10772	596;597	2	9606
NIAQIAVVMGSCTAGGAYVPAMADENIIVR	0	1	Oxidation (M)	3106.525	0.52496104	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			22.91	22.91	3	9.3184E-11	16889	DP1063-8	101.43	90.402			1.1455	1.1869	NaN	1	0	Median	35577000	16432000	19145000	2196	524	2074	5179	10774;10775	10774	596;597	2	9606
NIDDGTSDRPYSHALVAGIDR	0	2	Unmodified	2271.088	0.087986745	258	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	5	0					3	17.518	17.518	2;3;4	1.2777E-07	10417	DP1063-10	142.23	122.94			10.18	10.332	NaN	1	0	Median	261920000	11442000	250480000	2197	258	2075	5180;5181;5182	10776;10777;10778;10779;10780;10781;10782;10783;10784;10785	10779		10	9606
NIDDGTSDRPYSHALVAGIDRYPR	0	3	Unmodified	2687.3052	0.30519016	258	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					2	17.728	17.728	3;4	4.0294E-07	10718	DP1063-10	128.4	110.64			12.065	12.336	NaN	1	0	Median	93182000	5425800	87756000	2198	258	2076	5183;5184	10786;10787;10788	10788		3	9606
NIEDVIAQGIGK	1	0	Unmodified	1255.6772	0.67721588	97	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	21.116	21.116	2	1.4091E-05	15064	DP1063-10	151.83	103.73			12.511	7.4222	NaN	1	0	Median	100410000	7093800	93312000	2199	97	2077	5185	10789;10790;10791;10792	10790		4	9606
NIEMTQEDVR	0	1	Oxidation (M)	1249.5609	0.5608655	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					14.488	14.488	2	0.021476	4262	DP1063-6	102.06	76.44			NaN	NaN	NaN	0	0	Median	9437600	0	9437600	2200	71	2078	5186	10793;10794	10794	64	2	9606
NIEMTQEDVR	0	1	Unmodified	1233.566	0.56595087	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.078	16.078	2	0.036565	6229	DP1063-6	84.476	43.049			NaN	NaN	NaN	0	0	Median	3098500	0	3098500	2201	71	2078	5187	10795	10795		1	9606
NIFCTIMTSEDFLDAFEK	1	0	Oxidation (M)	2195.9755	0.97550767	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2.33	0.624		9	2	1		26.093	26.093	2;3	1.0888999999999998E-59	19894	DP1063-8	259.1	190.07			NaN	NaN	NaN	0	0	Median	169290000	0	169290000	2202	418	2079	5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198;5199	10796;10797;10798;10799;10800;10801;10802;10803;10804;10805;10806;10807;10808;10809;10810;10811;10812;10813	10809	520	18	9606
NIFCTIMTSEDFLDAFEK	1	0	Unmodified	2179.9806	0.98059305	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				26.521	26.521	2	0.0011774	21284	DP1063-7	121.42	78.121			NaN	NaN	NaN	0	0	Median	3700200	0	3700200	2203	418	2079	5200	10814;10815	10815		2	9606
NIIQQAIDAGEVPSYNAFVK	1	0	Unmodified	2176.1164	0.11643333	463	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	4	0				1		23.073	23.073	2	2.36E-07	17256	DP1063-9	147.51	104.71			NaN	NaN	NaN	0	0	Median	5260000	0	5260000	2204	463	2080	5201	10816;10817	10817		2	9606
NIIVGFAR	0	1	Unmodified	888.51814	0.51813647	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0				1		18.763	18.763	2	0.0023588	11629	DP1063-9	119.56	48.179			1.1449	1.1976	NaN	1	0	Median	102620000	51755000	50868000	2205	95	2081	5202	10818;10819;10820	10820		3	9606
NILLTNEQLESAR	0	1	Unmodified	1499.7944	0.79437091	523	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		18.799	18.799	2	0.00018603	11756	DP1063-9	145.46	58.575			NaN	NaN	NaN	0	0	Median	9999200	9999200	0	2206	523	2082	5203	10821;10822	10822		2	9606
NILSVVGTDALKK	2	0	Unmodified	1356.7977	0.79766537	50	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	1	3	0			2			18.955	18.955	2;3	0.0012391	11818	DP1063-8	117.95	90.609			NaN	NaN	NaN	0	0	Median	42095000	0	42095000	2207	50	2083	5204;5205	10823;10824	10823		2	9606
NILVDYGLR	0	1	Unmodified	1061.5869	0.58694431	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.153	20.153	2	0.023152	11464	DP1063-6	70.919	18.203			1.3951	1.4526	NaN	1	0	Median	4036900	1701700	2335200	2208	38	2084	5206	10825	10825		1	9606
NINTFVETPVQK	1	0	Unmodified	1388.73	0.72997974	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				18.108	18.108	2	2.6167E-06	10494	DP1063-7	175.93	109.66			NaN	NaN	NaN	0	0	Median	21443000	0	21443000	2209	211	2085	5207;5208	10826;10827;10828;10829	10829		4	9606
NIPGITLLNVSK	1	0	Unmodified	1267.75	0.7499869	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3.5	0.5			1	1		21.07	21.07	2	0.00017432	14685	DP1063-9	123.62	78.482			11.546	11.868	NaN	1	0	Median	191250000	8902000	182350000	2210	193	2086	5209;5210	10830;10831;10832;10833;10834;10835	10833		6	9606
NIPLLFLQNITGFMVGR	0	1	Oxidation (M)	1948.0604	0.060438772	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	4	0.816			1	1	1	25.927	25.927	2;3	0.00021614	20669	DP1063-10	110.38	110.38			1.0016	1.0379	26.661	3	0	Median	92326000	44069000	48256000	2211	524	2087	5211;5212;5213	10836;10837;10838;10839;10840;10841	10837	598	6	9606
NIPLLFLQNITGFMVGR	0	1	Unmodified	1932.0655	0.06552415	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			27.581	27.581	2	5.9143E-18	22243	DP1063-8	188.15	166.09			1.0424	1.0801	NaN	1	0	Median	12550000	6662300	5887200	2212	524	2087	5214	10842;10843;10844;10845	10844		4	9606
NISHDTFGTTYGR	0	1	Unmodified	1467.6743	0.67425577	521	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		15.869	15.869	2	0.0498	7825	DP1063-9	77.744	52.123			NaN	NaN	NaN	0	0	Median	10132000	0	10132000	2213	521	2088	5215	10846	10846		1	9606
NISMSVEGDYTYLR	0	1	Oxidation (M)	1662.7559	0.75593649	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	1	0	1					19.226	19.226	2	0.0016488	10227	DP1063-6	120.53	73.342			NaN	NaN	NaN	0	0	Median	0	0	0	2214	585	2089	5216	10847	10847	637	1	9606
NITYLPAGQSVLLQLPQ	0	0	Unmodified	1854.0251	0.025099124	188	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		24.406	24.406	2	3.482E-15	18867	DP1063-9	174.05	107.99			NaN	NaN	NaN	0	0	Median	0	0	0	2215	188	2090	5217	10848;10849	10848		2	9606
NIYAFMGTPVQK	1	0	Oxidation (M)	1383.6857	0.68567208	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1.67	0.471	1	2				18.093	18.093	2	0.0077339	8842	DP1063-6	113.93	77.593			NaN	NaN	NaN	0	0	Median	16081000	0	16081000	2216	211	2091	5218;5219;5220	10850;10851;10852;10853	10851	244	4	9606
NKFPGDSVVTGR	1	1	Unmodified	1275.6571	0.65714914	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		15.653	15.653	2;3	1.7035E-10	7643	DP1063-8	145.09	116.51			0.88458	0.92621	2.9301	3	0	Plateau	249840000	124300000	125540000	2217	95	2092	5221;5222;5223	10854;10855;10856;10857;10858	10856		5	9606
NKLDHYAIIK	2	0	Unmodified	1213.6819	0.68190733	283	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					2	15.294	15.294	2;3	0.0057299	7678	DP1063-10	74.533	33.818			10.985	11.195	NaN	1	0	Median	90154000	8389800	81764000	2218	283	2093	5224;5225	10859;10860	10859		2	9606
NKLNDLEDALQQAK	2	0	Unmodified	1598.8264	0.82639932	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2	1	1		1			19.424	19.424	2	7.6245E-13	12414	DP1063-8	202	142.94		+	NaN	NaN	NaN	0	0	Median	64062000	64062000	0	2219	88	2094	5226;5227	10861;10862;10863	10863		3	9606
NKLNDLEDALQQAKEDLAR	2	1	Unmodified	2183.1182	0.11822424	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	2	0.816	1	1	1			21.771	21.771	3	2.3781E-49	15474	DP1063-8	244.32	202.06		+	NaN	NaN	NaN	0	0	Median	45044000	45044000	0	2220	88	2095	5228;5229;5230	10864;10865;10866;10867;10868	10867		5	9606
NKLNDLEEALQQAKEDLAR	2	1	Unmodified	2197.1339	0.1338743	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	2	1	0	1					21.967	21.967	3	0.0002566	13792	DP1063-6	117.3	76.866		+	NaN	NaN	NaN	0	0	Median	0	0	0	2221	20	2096	5231	10869	10869		1	9606
NKPQVPVPGSDISETQVER	1	1	Unmodified	2079.0596	0.059646729	471	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	1	4	0				1		16.847	16.847	3	0.0011475	9012	DP1063-9	108.14	79.259			NaN	NaN	NaN	0	0	Median	8020400	0	8020400	2222	471	2097	5232	10870;10871	10871		2	9606
NKYEDEINKR	2	1	Unmodified	1307.647	0.64697839	88;17;13	P04264;CON__P04264;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__P05787;P05787	KRT1;KRT5;KRT8	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 8	no	no	0	0	2	2.5	1.12	1	1	1	1		13.715	13.715	3	1.0315E-08	5011	DP1063-8	157.75	121.06		+	0.032335	0.033416	NaN	1	0	Median	331650000	323970000	7680500	2223	88;17;13	2098	5233;5234;5235;5236	10872;10873;10874;10875;10876;10877;10878;10879	10876		8	9606
NLATTVTEEILEK	1	0	Unmodified	1459.777	0.77698951	53	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	3	0			1			22.524	22.524	2	0.0040464	16426	DP1063-8	112.15	75.701			NaN	NaN	NaN	0	0	Median	10725000	0	10725000	2224	53	2099	5237	10880;10881	10880		2	9606
NLDIERPTYTNLNR	0	2	Unmodified	1717.8747	0.87474649	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	1	3.5	0.5			1	1		17.509	17.509	2	2.1328E-10	9881	DP1063-9	182.41	146.67			2.7846	2.8283	3.3977	2	0	Median	807470000	224760000	582710000	2225	310;434;492	2100	5238;5239	10882;10883;10884;10885;10886;10887;10888;10889;10890;10891	10888		10	9606
NLDLAVLELMQSSVDNTK	1	0	Oxidation (M)	2005.0038	0.003771334	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22	22	2	1.3223E-09	13844	DP1063-6	157.35	117.92			NaN	NaN	NaN	0	0	Median	3164200	0	3164200	2226	318	2101	5240	10892;10893	10892	384	2	9606
NLDLDSIIAEVK	1	0	Unmodified	1328.7187	0.71874635	20;17	P35908;CON__P35908v2;CON__P35908;CON__O95678;O95678;CON__Q5XKE5;Q5XKE5;CON__P13647;P13647	KRT2;KRT75;KRT79;KRT5	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 5	no	no	0	0	0	3	1.58	1	1		1	1	23.321	23.321	2	0.00011243	17485	DP1063-7	152.64	96.625		+	NaN	NaN	NaN	0	0	Median	49910000	49910000	0	2227	20;17	2102	5241;5242;5243;5244	10894;10895;10896;10897;10898;10899;10900	10898		7	9606
NLLSAYGEVGR	0	1	Unmodified	1177.6091	0.60913632	558	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		19.249	19.249	2	0.0077792	12358	DP1063-9	117.7	44.082			NaN	NaN	NaN	0	0	Median	16125000	0	16125000	2228	558	2103	5245	10901;10902	10901		2	9606
NLLVTMLIDQLCGR	0	1	Oxidation (M)	1660.864	0.86404715	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					24.881	24.881	2	0.00033752	17139	DP1063-6	144.1	144.1			1.0697	1.1112	NaN	1	0	Median	20578000	10326000	10252000	2229	355	2104	5246	10903;10904;10905;10906	10905	427	4	9606
NLPFDFTWK	1	0	Unmodified	1166.576	0.57604528	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2	0		1				23.025	23.025	2	0.0011253	16996	DP1063-7	109.48	92.248			1.0162	1.0472	NaN	1	0	Median	17655000	8455200	9199700	2230	236	2105	5247	10907;10908;10909	10907		3	9606
NLQCLVIDEADR	0	1	Unmodified	1444.698	0.69802768	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2	0		1				19.614	19.614	2	0.00085366	12608	DP1063-7	139.43	94.411			NaN	NaN	NaN	0	0	Median	20196000	0	20196000	2231	537	2106	5248	10910;10911	10911		2	9606
NLQEQVMAVTAQVK	1	0	Oxidation (M)	1573.8134	0.81339179	456	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	1	0	4	0				1		19.664	19.664	2	0.00084476	12880	DP1063-9	136.38	77.865			NaN	NaN	NaN	0	0	Median	14083000	0	14083000	2232	456	2107	5249	10912;10913	10912	540	2	9606
NLQTVNVDEN	0	0	Unmodified	1144.536	0.53603095	294	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	17.027	17.027	2	0.0012844	9749	DP1063-10	159.58	113.12			NaN	NaN	NaN	0	0	Median	0	0	0	2233	294	2108	5250	10914;10915	10915		2	9606
NLQYYDISAK	1	0	Unmodified	1213.5979	0.59790293	286	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	17.965	17.965	2	0.0094846	11010	DP1063-10	77.379	31.221			0.84131	0.49909	NaN	1	0	Median	9189200	5444800	3744500	2234	286	2109	5251	10916;10917	10916		2	9606
NLSPYVSNELLEEAFSQFGPIER	0	1	Unmodified	2638.2915	0.29149716	163	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				25.851	25.851	2	7.5667E-07	20563	DP1063-7	116.35	89.14			NaN	NaN	NaN	0	0	Median	0	0	0	2235	163	2110	5252	10918	10918		1	9606
NLSSNEAISLEEIR	0	1	Unmodified	1573.7948	0.79476484	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.59	19.59	2	0.00010492	10699	DP1063-6	142.08	73.459			NaN	NaN	NaN	0	0	Median	11659000	0	11659000	2236	318	2111	5253	10919;10920	10920		2	9606
NLVPGESVYGEK	1	0	Unmodified	1290.6456	0.6455814	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		17.389	17.389	2	0.0050314	9788	DP1063-9	115.57	56.224			NaN	NaN	NaN	0	0	Median	35357000	0	35357000	2237	160	2112	5254	10921;10922	10922		2	9606
NLVPGESVYGEKR	1	1	Unmodified	1446.7467	0.74669243	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		16.124	16.124	3	0.0014239	8107	DP1063-9	113.65	79.964			NaN	NaN	NaN	0	0	Median	17819000	0	17819000	2238	160	2113	5255	10923;10924	10923		2	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	0	1	Oxidation (M)	2204.893	0.89299211	161	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4	0				2		16.232	16.232	2	8.5826E-29	8243	DP1063-9	197.1	163.78			1.0994	1.15	NaN	1	0	Median	17046000	6317500	10728000	2239	161	2114	5256;5257	10925;10926;10927;10928	10926	189	4	9606
NMHSFNTDPEVFIFLVSTR	0	1	Oxidation (M)	2269.0838	0.08375299	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				23.3	23.3	2	0.039143	17425	DP1063-7	80.3	46.983			NaN	NaN	NaN	0	0	Median	0	0	0	2240	532	2115	5258	10929	10929		1	9606
NMQDMVEDYR	0	1	2 Oxidation (M)	1331.5122	0.51220074	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	1.67	0.943	2		1			15.03	15.03	2	0.018912	6762	DP1063-8	109.44	93.824		+	NaN	NaN	NaN	0	0	Median	29013000	29013000	0	2241	88	2116	5259;5260;5261	10930;10931;10932;10933	10932	73;74	4	9606
NMSVHLSPCFR	0	1	Oxidation (M)	1362.6173	0.61727494	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	5	0					1	16.235	16.235	3	0.0022656	8777	DP1063-10	69.672	38.6			5.1453	3.7111	NaN	1	0	Median	113550000	12980000	100570000	2242	275	2117	5262	10934;10935;10936	10935	329	3	9606
NMSVIAHVDHGK	1	0	Oxidation (M)	1322.6401	0.64011887	137	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	2	0		1				13.005	13.005	3	0.00042152	3658	DP1063-7	84.169	84.169			1.1901	1.2263	NaN	1	0	Median	13855000	6072600	7782900	2243	137	2118	5263	10937;10938;10939;10940	10938	168	4	9606
NNASTDYDLSDK	1	0	Unmodified	1341.5685	0.56845329	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2.5	1.5	1			1		15.485	15.485	2	2.4639E-07	7173	DP1063-9	167.09	158.18			13.574	13.952	NaN	1	0	Median	105030000	5418400	99610000	2244	201	2119	5264;5265	10941;10942;10943;10944;10945;10946	10943		6	9606
NNIDSIFEVGGVPYSVLEPVLER	0	1	Unmodified	2545.3064	0.30641894	378	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				25.536	25.536	2	4.7045E-40	20178	DP1063-7	205.98	168.32			NaN	NaN	NaN	0	0	Median	2313600	0	2313600	2245	378	2120	5266	10947;10948	10948		2	9606
NNVAIAVTYNHDGSYSMQIEDK	1	0	Oxidation (M)	2484.1227	0.12271727	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		2				17.595	17.595	2;3	2.2814000000000001E-41	9809	DP1063-7	213.94	213.94			1.0584	1.0906	13.001	2	0	Median	194210000	87515000	106690000	2246	483	2121	5267;5268	10949;10950;10951;10952;10953;10954;10955;10956;10957;10958;10959;10960;10961	10957	557	13	9606
NNYRNAHSATTWSGQYVGGAEAR	0	2	Unmodified	2509.1483	0.14829559	28	CON__Streptavidin			yes	yes	0	0	1	5	0					2	15.768	15.768	3;4	0.00030495	8253	DP1063-10	97.059	69.835		+	NaN	NaN	NaN	0	0	Median	17064000	17064000	0	2247	28	2122	5269;5270	10962;10963;10964;10965	10962		4	
NPDDITNEEYGEFYK	1	0	Unmodified	1832.7741	0.77408897	110	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				19.443	19.443	2	0.0081229	12412	DP1063-7	72.496	56.403			1.1334	1.1679	NaN	1	0	Median	33542000	17309000	16234000	2248	110	2123	5271	10966	10966		1	9606
NPDDITQEEYGEFYK	1	0	Unmodified	1846.7897	0.78973904	113	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				19.595	19.595	2	1.1159E-23	12582	DP1063-7	204.49	204.49			1.2544	1.2926	NaN	1	0	Median	49090000	21945000	27145000	2249	113	2124	5272	10967;10968;10969;10970	10968		4	9606
NPDLCDFTIDHQSCSR	0	1	Unmodified	1963.8153	0.81525906	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				2		18.088	18.088	2;3	7.7129E-07	10800	DP1063-9	153.75	127.62			NaN	NaN	NaN	0	0	Median	15859000	0	15859000	2250	352	2125	5273;5274	10971;10972;10973	10973		3	9606
NPDTQWITK	1	0	Unmodified	1101.5455	0.54547343	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	17.164	17.164	2	0.0018105	9959	DP1063-10	145.72	79.65			NaN	NaN	NaN	0	0	Median	9950800	0	9950800	2251	257	2126	5275	10974;10975	10975		2	9606
NPDTQWITKPVHK	2	0	Unmodified	1562.8205	0.82052608	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	1	5	0					2	15.644	15.644	2;3	3.3554E-06	8103	DP1063-10	161.67	96.169			8.4102	8.5712	NaN	1	0	Median	79341000	7441200	71900000	2252	257	2127	5276;5277	10976;10977;10978;10979	10979		4	9606
NPEHFVVCNR	0	1	Unmodified	1270.5877	0.58768937	412	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	3	0			2			14.877	14.877	2;3	0.0014741	6625	DP1063-8	141.52	109.17			NaN	NaN	NaN	0	0	Median	36519000	0	36519000	2253	412	2128	5278;5279	10980;10981;10982;10983	10981		4	9606
NPELSTQLIDIIHTAAAR	0	1	Unmodified	1962.0534	0.053439139	541	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		2				22.628	22.628	2;3	0.00049691	16575	DP1063-7	121.72	74.083			NaN	NaN	NaN	0	0	Median	11318000	0	11318000	2254	541	2129	5280;5281	10984;10985;10986;10987	10985		4	9606
NPLFCGAENTSLWELKK	2	0	Unmodified	2005.9931	0.99314707	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				20.435	20.435	3	0.034576	13752	DP1063-7	69.188	33.337			NaN	NaN	NaN	0	0	Median	10827000	0	10827000	2255	338	2130	5282	10988	10988		1	9606
NPPGFAFVEFEDPRDAADAVR	0	2	Unmodified	2319.092	0.09200949	325	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	1	5	0					1	21.787	21.787	3	0.0044915	15954	DP1063-10	88.319	62.733			NaN	NaN	NaN	0	0	Median	7436500	0	7436500	2256	325	2131	5283	10989;10990	10989		2	9606
NPQNSSQSADGLR	0	1	Unmodified	1372.6331	0.63311924	331	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	yes	0	0	0	4	0				1		13.571	13.571	2	0.0022573	4697	DP1063-9	127.17	72.452			NaN	NaN	NaN	0	0	Median	3218300	0	3218300	2257	331	2132	5284	10991;10992	10992		2	9606
NPQNSTVLAR	0	1	Unmodified	1098.5782	0.57817054	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.267	14.267	2	2.5263E-05	4036	DP1063-6	132.76	88.381			45.207	46.265	NaN	1	0	Median	154850000	1698900	153150000	2258	365	2133	5285;5286;5287;5288	10993;10994;10995;10996;10997;10998;10999;11000	10994		8	9606
NPSNCYGEESNAVCEK	1	0	Unmodified	1856.7305	0.73052637	5	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	1	0	1					15.156	15.156	2	0.0040162	5134	DP1063-6	109.22	99.733		+	NaN	NaN	NaN	0	0	Median	2182100	2182100	0	2259	5	2134	5289	11001	11001		1	
NQGDEEGTEIDTLQFR	0	1	Unmodified	1850.8282	0.82824981	44	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	4	0				1		19.551	19.551	2	0.0072973	12754	DP1063-9	94.402	63.055			NaN	NaN	NaN	0	0	Median	0	0	0	2260	44	2135	5290	11002	11002		1	9606
NQGGYGGSSSSSSYGSGR	0	1	Unmodified	1693.6928	0.69281896	118	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4	0				2		13.828	13.828	2	2.7035E-75	4996	DP1063-9	261.38	261.38			8.2196	8.5981	NaN	1	0	Median	78416000	7892700	70524000	2261	118	2136	5291;5292	11003;11004;11005;11006;11007	11004		5	9606
NQIALWDQLLEGR	0	1	Unmodified	1554.8154	0.8154407	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	2	0		1				23.538	23.538	2	2.5087E-10	17728	DP1063-7	182.92	122.23			NaN	NaN	NaN	0	0	Median	14918000	0	14918000	2262	543	2137	5293	11008;11009	11008		2	9606
NQQPVLPAGLQVPK	1	0	Unmodified	1487.846	0.84601255	333	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				19.204	19.204	2	0.0040043	12027	DP1063-7	110.53	71.515			NaN	NaN	NaN	0	0	Median	16001000	0	16001000	2263	333	2138	5294	11010	11010		1	9606
NQSFCPTVNLDK	1	0	Unmodified	1421.6609	0.66091389	213	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	5	0					1	17.788	17.788	2	3.8929E-06	10787	DP1063-10	166.66	136.88			NaN	NaN	NaN	0	0	Median	31389000	0	31389000	2264	213	2139	5295	11011;11012	11012		2	9606
NQTAEKEEFEHQQK	2	0	Unmodified	1744.8016	0.80164113	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	2.67	0.471		1	2			12.75	12.75	3	2.4444E-14	3881	DP1063-8	203.7	175.76			3.2668	3.3713	NaN	1	0	Median	65121000	1966100	63155000	2265	128	2140	5296;5297;5298	11013;11014;11015;11016;11017	11016		5	9606
NQVALNPQNTVFDAK	1	0	Unmodified	1657.8424	0.84238373	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	4	1			1		1	18.626	18.626	2	6.4113E-16	11337	DP1063-8	187.78	137.3			4.0908	4.12	NaN	1	0	Median	514820000	105490000	409330000	2266	124	2141	5299;5300	11018;11019;11020;11021;11022;11023	11021		6	9606
NQVAMNPTNTVFDAK	1	0	Oxidation (M)	1664.7828	0.78281994	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	2.5	0.5		1	1			17.138	17.138	2	2.6888E-16	9535	DP1063-8	191.29	191.29			3.6159	3.6836	32.946	2	0	Median	152390000	33974000	118420000	2267	128	2142	5301;5302	11024;11025;11026;11027;11028;11029;11030	11028	146	7	9606
NRENCELSDHCIK	1	1	Unmodified	1673.725	0.72498749	435	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		1				13.566	13.566	3	0.0091799	4420	DP1063-7	85.457	60.009			NaN	NaN	NaN	0	0	Median	7925200	0	7925200	2268	435	2143	5303	11031;11032	11032		2	9606
NREPVQLETLSIR	0	2	Unmodified	1553.8526	0.85255449	277	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	1	5	0					2	18.041	18.041	2;3	6.139E-09	11115	DP1063-10	177.16	120.73			3.5076	3.56	NaN	1	0	Median	31580000	5470000	26110000	2269	277	2144	5304;5305	11033;11034;11035	11035		3	9606
NSLESYAFNMK	1	0	Oxidation (M)	1318.5864	0.58635197	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	2	0		1				18.199	18.199	2	0.006645	10631	DP1063-7	131.5	90.622			NaN	NaN	NaN	0	0	Median	20252000	0	20252000	2270	128	2145	5306	11036;11037	11036	147	2	9606
NSLPDTVQIR	0	1	Unmodified	1141.6091	0.60913632	248	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	5	0					1	17.327	17.327	2	0.023213	10194	DP1063-10	92.838	41.772			NaN	NaN	NaN	0	0	Median	9408800	0	9408800	2271	248	2146	5307	11038	11038		1	9606
NSLVDKPFAAK	2	0	Unmodified	1188.6503	0.65027285	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	4	0				1		15.713	15.713	2	0.04799	7557	DP1063-9	70.399	26.021			0.86045	0.91023	NaN	1	0	Median	10248000	4426700	5821400	2272	377	2147	5308	11039	11039		1	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	3 Oxidation (M)	3133.3315	0.33146577	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	3	0	2	0		1				17.969	17.969	3	4.218E-22	10315	DP1063-7	162.21	162.21			0.95869	0.98786	NaN	1	0	Median	98349000	51645000	46704000	2273	483	2148	5309	11040;11041;11042;11043;11044	11042	558;559;560	5	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	2 Oxidation (M)	3117.3366	0.33655115	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2	0		1				18.802	18.802	3	3.6028E-10	11474	DP1063-7	100.59	98.189			0.85171	0.87763	NaN	1	0	Median	51049000	25178000	25870000	2274	483	2148	5310	11045;11046;11047	11046	558;559;560	3	9606
NSSYFVEWIPNNVK	1	0	Unmodified	1695.8257	0.82567103	311;109;373;366	P07437;P68371;P04350;Q13509;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB3;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	4	0.816			1	1	1	21.855	21.855	2	5.8751E-100	15542	DP1063-8	289.22	289.22			3.5345	3.5598	54.634	3	0	Plateau	285010000	62152000	222850000	2275	109;311;366;373	2149	5311;5312;5313	11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058	11052		11	9606
NSVSNFLHSLER	0	1	Unmodified	1401.7001	0.70007659	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				20.466	20.466	2;3	4.4002E-55	11865	DP1063-6	255.52	211.56			1.0713	1.0784	7.9346	4	0	Median	1427400000	705190000	722220000	2276	355	2150	5314;5315;5316;5317	11059;11060;11061;11062;11063;11064;11065;11066;11067;11068;11069;11070;11071;11072	11065		14	9606
NSVTPDMMEEMYK	1	0	3 Oxidation (M)	1621.631	0.63099525	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	3	0	4	0				1		14.895	14.895	2	0.00044916	6398	DP1063-9	122.51	101.51			NaN	NaN	NaN	0	0	Median	10584000	0	10584000	2277	214	2151	5318	11073;11074	11074	251;252;253	2	9606
NSVTPDMMEEMYKK	2	0	3 Oxidation (M)	1749.726	0.72595827	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	3	1	4	0				1		13.703	13.703	3	0.027746	4893	DP1063-9	69.314	49.787			NaN	NaN	NaN	0	0	Median	17950000	0	17950000	2278	214	2152	5319	11075	11075	251;252;253	1	9606
NTCEAVVLGTLHPR	0	1	Unmodified	1565.7984	0.79841043	528	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	5	0					1	18.021	18.021	2	0.0053766	11136	DP1063-10	107.17	57.042			NaN	NaN	NaN	0	0	Median	6243600	0	6243600	2279	528	2153	5320	11076	11076		1	9606
NTDVPESQQNFHRPVK	1	1	Unmodified	1894.9286	0.92857298	466	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	1	1	0	1					14.16	14.16	3	0.0063062	3873	DP1063-6	89.466	64.125			NaN	NaN	NaN	0	0	Median	2191500	0	2191500	2280	466	2154	5321	11077	11077		1	9606
NTENNDVEISETK	1	0	Unmodified	1491.6689	0.66889562	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1.5	0.5	1	1				14.712	14.712	2	8.236E-10	4562	DP1063-6	174.24	118.93			NaN	NaN	NaN	0	0	Median	11130000	0	11130000	2281	426	2155	5322;5323	11078;11079;11080;11081	11079		4	9606
NTGVILANDANAER	0	1	Unmodified	1456.727	0.72701962	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.461	16.461	2	8.0544E-07	8290	DP1063-7	155.47	102.38			NaN	NaN	NaN	0	0	Median	58978000	0	58978000	2282	212	2156	5324	11082;11083	11083		2	9606
NTHCSSLPHYQK	1	0	Unmodified	1470.6674	0.66739625	209	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				13.078	13.078	3	0.033673	3750	DP1063-7	71.933	46.739			NaN	NaN	NaN	0	0	Median	4520600	0	4520600	2283	209	2157	5325	11084	11084		1	9606
NTIEMQAITALAHLR	0	1	Oxidation (M)	1696.893	0.89303909	509	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	1	0	2	0		1				21.867	21.867	3	0.00052828	15747	DP1063-7	119.87	75.431			NaN	NaN	NaN	0	0	Median	8613700	0	8613700	2284	509	2158	5326	11085;11086	11086	582	2	9606
NVDMLSELVQEYDEPILK	1	0	Oxidation (M)	2150.0453	0.045301798	487	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	1	0	3	0			1			23.609	23.609	2	0.0013364	17780	DP1063-8	103.85	64.837			NaN	NaN	NaN	0	0	Median	0	0	0	2285	487	2159	5327	11087	11087	567	1	9606
NVESIAEQMENPDLK	1	0	Oxidation (M)	1731.7985	0.79852959	472	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	1	0	2	0		1				17.269	17.269	2	3.4141E-08	9303	DP1063-7	160.22	131.52			NaN	NaN	NaN	0	0	Median	9587200	0	9587200	2286	472	2160	5328	11088;11089	11088	545	2	9606
NVFNALIR	0	1	Unmodified	945.5396	0.53960019	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		20.164	20.164	2	0.0017617	13573	DP1063-9	97.602	60.508			2.4126	2.5237	NaN	1	0	Median	21071000	5541900	15529000	2287	337	2161	5329	11090;11091;11092	11090		3	9606
NVGFSLR	0	1	Unmodified	791.42899	0.42898711	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	0.816		1	1	1		17.648	17.648	2	0.038794	10042	DP1063-8	94.407	60.669			NaN	NaN	NaN	0	0	Median	467780000	0	467780000	2288	418	2162	5330;5331;5332	11093;11094;11095	11094		3	9606
NVGVSFYADKPEVTQEQKK	3	0	Unmodified	2166.0957	0.095697884	25	CON__Q3SZR3			yes	yes	0	0	2	4	0				1		16.325	16.325	3	0.00036175	8421	DP1063-9	129.42	103.06		+	NaN	NaN	NaN	0	0	Median	88482000	88482000	0	2289	25	2163	5333	11096;11097	11097		2	
NVICDKCEGR	1	1	Unmodified	1249.5543	0.55434033	183	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	1	4	0				1		13.072	13.072	3	0.0052246	4132	DP1063-9	102.06	77.548			NaN	NaN	NaN	0	0	Median	3552800	0	3552800	2290	183	2164	5334	11098;11099	11099		2	9606
NVIISSAAERPLEIR	0	2	Unmodified	1666.9366	0.93661847	315	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	1	4	0				1		18.271	18.271	3	0.01392	10975	DP1063-9	79.633	37.808			NaN	NaN	NaN	0	0	Median	13908000	0	13908000	2291	315	2165	5335	11100	11100		1	9606
NVIQSVLQAIR	0	1	Unmodified	1239.7299	0.72992016	437	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		2				23.676	23.676	2	0.017967	17922	DP1063-7	96.668	57.121			NaN	NaN	NaN	0	0	Median	3192400	0	3192400	2292	437	2166	5336;5337	11101;11102;11103	11101		3	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	2	1	Unmodified	3141.4195	0.41950423	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2.6	1.02	1	1	2	1		13.257	13.257	4;5	9.795E-13	4484	DP1063-8	133.91	116.69			NaN	NaN	NaN	0	0	Median	140290000	0	140290000	2293	211	2167	5338;5339;5340;5341;5342	11104;11105;11106;11107;11108;11109;11110;11111;11112;11113;11114	11112		11	9606
NVLCSACSGQGGK	1	0	Unmodified	1336.5864	0.58636874	65	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	4	0				1		14.453	14.453	2	0.0031183	5882	DP1063-9	120.09	96.001			NaN	NaN	NaN	0	0	Median	4691600	0	4691600	2294	65	2168	5343	11115;11116	11116		2	9606
NVLISVLQAIR	0	1	Unmodified	1224.7554	0.75540662	474	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	2	0		1				23.936	23.936	2	0.0038551	18249	DP1063-7	79.489	49.171			0.76368	0.78955	NaN	1	0	Median	4385600	2161500	2224200	2295	474	2169	5344	11117;11118	11118		2	9606
NVLLDPQLVPGGGASEMAVAHALTEK	1	0	Oxidation (M)	2632.3531	0.35305156	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			21.662	21.662	3	0.001025	15303	DP1063-8	63.372	44.812			1.0414	1.0489	NaN	1	0	Median	23122000	10206000	12915000	2296	225	2170	5345	11119	11119	262	1	9606
NVMVEPHRHEGVFICR	0	2	Oxidation (M)	1994.9567	0.95671876	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	1	1	4	0				2		14.974	14.974	3;4	0.00062743	6526	DP1063-9	85.287	71.311			4.7791	4.8491	NaN	1	0	Median	69543000	5946600	63597000	2297	160	2171	5346;5347	11120;11121;11122;11123	11120	188	4	9606
NVQAEEMVEFSSGLK	1	0	Oxidation (M)	1682.7822	0.78215124	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			18.316	18.316	2	0.0043513	10990	DP1063-8	114.87	74.141			NaN	NaN	NaN	0	0	Median	18604000	0	18604000	2298	170	2172	5348	11124;11125	11124	197	2	9606
NVQALEIELQSQLALK	1	0	Unmodified	1796.0044	0.0043636815	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	0			2			22.948	22.948	2;3	7.6406E-09	16968	DP1063-8	210.95	168.91		+	NaN	NaN	NaN	0	0	Median	13273000	13273000	0	2299	16	2173	5349;5350	11126;11127;11128;11129	11129		4	9606
NVQLQENEIR	0	1	Unmodified	1241.6364	0.6364137	194	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	4	0.295			1	21	1	16.359	16.359	2	1.21E-16	8110	DP1063-9	189.7	111.78			128.01	133.9	NaN	1	0	Median	2445200000	8700000	2436500000	2300	194	2174	5351;5352;5353;5354;5355;5356;5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373	11130;11131;11132;11133;11134;11135;11136;11137;11138;11139;11140;11141;11142;11143;11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154;11155;11156;11157	11135		28	9606
NVQLTENEIR	0	1	Unmodified	1214.6255	0.62551466	264	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		16.551	16.551	2	0.002362	8636	DP1063-9	170.5	125.36			NaN	NaN	NaN	0	0	Median	29527000	0	29527000	2301	264	2175	5374	11158;11159;11160	11158		3	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	2 Oxidation (M)	2903.3753	0.37531992	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	2	0	2.43	1.18	2	2	1	2		22.089	22.089	2;3	1.2599E-26	16004	DP1063-9	178.22	157.57		+	NaN	NaN	NaN	0	0	Median	135950000	135950000	0	2302	16	2176	5375;5376;5377;5378;5379;5380;5381	11161;11162;11163;11164;11165;11166;11167;11168;11169;11170;11171;11172;11173;11174	11171	9;10	14	9606
NVTLCGHLHHGK	1	0	Unmodified	1371.683	0.68298674	391	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				12.842	12.842	3	0.0020574	3475	DP1063-7	78.653	78.653			5.6135	5.7843	NaN	1	0	Median	7866500	1681000	6185400	2303	391	2177	5382	11175	11175		1	9606
NVTLPAVFK	1	0	Unmodified	987.57532	0.57531699	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		19.854	19.854	2	0.00231	13144	DP1063-9	92.47	58.467			8.7987	9.0436	NaN	1	0	Median	69679000	6499300	63180000	2304	193	2178	5383	11176;11177	11176		2	9606
NVVTIFSAPNYCYR	0	1	Unmodified	1702.8137	0.81372614	282	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	0	0	4	0				1		20.898	20.898	2	0.002706	14591	DP1063-9	118.4	60.618			NaN	NaN	NaN	0	0	Median	5651800	0	5651800	2305	282	2179	5384	11178	11178		1	9606
NYDPALHPFEVPR	0	1	Unmodified	1553.7627	0.76267685	534	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	3	0			1			18.706	18.706	3	0.010405	11495	DP1063-8	86.803	53.599			NaN	NaN	NaN	0	0	Median	10181000	0	10181000	2306	534	2180	5385	11179	11179		1	9606
NYQEAKDAFLGSFLYEYSR	1	1	Unmodified	2300.075	0.074962442	12	CON__P02769			yes	yes	0	0	1	2	0.816	1	1	1			22.491	22.491	2	3.2862E-134	16329	DP1063-8	338.78	283.06		+	NaN	NaN	NaN	0	0	Median	53048000	53048000	0	2307	12	2181	5386;5387;5388	11180;11181;11182;11183;11184;11185;11186	11186		7	
NYQFDFLRPQHSLFNYFTK	1	1	Unmodified	2464.1964	0.19641498	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				22.353	22.353	4	0.053141	16239	DP1063-7	28.14	12.032			0.55937	0.58572	NaN	1	0	Median	11317000	5339800	5977200	2308	406	2182	5389	11187	11187		1	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	1	1	Unmodified	3256.3889	0.38893238	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	3.5	0.5			1	1		14.371	14.371	3	3.7932E-36	5972	DP1063-8	186.28	171.1			8.3717	7.9171	NaN	1	0	Median	131240000	12397000	118840000	2309	306	2183	5390;5391	11188;11189;11190;11191;11192;11193;11194;11195;11196;11197	11190		10	9606
NYSPYYNTIDDLKDQIVDLTVGNNK	2	0	Unmodified	2901.4032	0.40323245	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			2			24.06	24.06	2;3	6.0561E-11	18347	DP1063-8	144.95	123.94		+	NaN	NaN	NaN	0	0	Median	51358000	51358000	0	2310	19	2184	5392;5393	11198;11199;11200	11199		3	9606
NYTQNIDTLEQVAGIQR	0	1	Unmodified	1961.9807	0.98066813	472	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	0	0	2	0		1				21.523	21.523	2	0.0021468	15224	DP1063-7	117.79	73.604			NaN	NaN	NaN	0	0	Median	8708100	0	8708100	2311	472	2185	5394	11201	11201		1	9606
PAPAVGEAEDKENQQATSGPNQPSVR	1	1	Unmodified	2676.2739	0.27394961	144	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3.67	0.471			1	2		15.152	15.152	3	1.0794E-28	6777	DP1063-9	161.64	141.19			NaN	NaN	NaN	0	0	Median	77202000	0	77202000	2312	144	2186	5395;5396;5397	11202;11203;11204;11205;11206	11206		5	9606
PATLLWLIQK	1	0	Unmodified	1181.7172	0.7172302	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					22.971	22.971	2	0.022726	15035	DP1063-6	93.143	29.609			NaN	NaN	NaN	0	0	Median	2184100	0	2184100	2313	73	2187	5398	11207;11208	11208		2	9606
PEEPPSIWR	0	1	Unmodified	1109.5506	0.55055881	479	Q96LW4	PRIMPOL	DNA-directed primase/polymerase protein	yes	yes	0	0	0	3	0			1			21.356	21.356	2	0.00084877	14944	DP1063-8	98.458	98.458			4.7619	4.9341	NaN	1	0	Median	83494000	12186000	71308000	2314	479	2188	5399	11209;11210;11211	11211		3	9606
PGAALDPGCVLAK	1	0	Unmodified	1267.6595	0.65945733	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.272	18.272	2	0.0076879	9040	DP1063-6	73.499	59.201			0.85159	0.8687	NaN	1	0	Median	30300000	16254000	14046000	2315	355	2189	5400	11212	11212		1	9606
PGASLPPLDLQALEK	1	0	Unmodified	1547.8559	0.85590853	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			21.564	21.564	2	1.1785E-05	15186	DP1063-7	153.81	122.98			0.70641	0.72791	NaN	1	0	Median	103470000	55636000	47831000	2316	130	2190	5401;5402	11213;11214;11215;11216;11217	11216		5	9606
PGASLPPLDLQALEKELVDR	1	1	Unmodified	2160.179	0.17903358	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				23.462	23.462	3	1.2595E-05	17647	DP1063-7	136.66	97.014			NaN	NaN	NaN	0	0	Median	7380500	7380500	0	2317	130	2191	5403	11218	11218		1	9606
PGETEEPRPPEQQDQEGGEAAK	1	1	Unmodified	2378.0622	0.062225504	478	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	2.5	0.5		1	1			14.216	14.216	3	6.1508E-06	5216	DP1063-7	132.14	97.877			NaN	NaN	NaN	0	0	Median	15310000	0	15310000	2318	478	2192	5404;5405	11219;11220;11221	11219		3	9606
PGETEEPRPPEQQDQEGGEAAK	1	1	Acetyl (Protein N-term)	2420.0728	0.07279019	478	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	1	0	1	2	0		1				14.498	14.498	3	0.00035199	5612	DP1063-7	99.021	79.766			NaN	NaN	NaN	0	0	Median	4759600	0	4759600	2319	478	2192	5406	11222;11223	11222		2	9606
PGPYDRPGTAR	0	2	Unmodified	1185.5891	0.58906958	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	1	4	0				1		13.235	13.235	3	0.030471	4261	DP1063-9	70.056	25.193			NaN	NaN	NaN	0	0	Median	6718700	0	6718700	2320	239	2193	5407	11224	11224		1	9606
PGTPSAEGGSTSSTLR	0	1	Unmodified	1503.7165	0.71651452	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	3	0			1			14.39	14.39	2	0.0065412	5959	DP1063-8	101.56	42.129			NaN	NaN	NaN	0	0	Median	4518700	0	4518700	2321	190	2194	5408	11225	11225		1	9606
PLFPHVLCHNCAVEFNFGQK	1	0	Unmodified	2413.146	0.14597609	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				20.072	20.072	4	1.2901E-06	13192	DP1063-7	127.49	127.49			3.0846	3.1784	NaN	1	0	Median	39429000	10293000	29136000	2322	330	2195	5409	11226	11226		1	9606
PLISVYSEK	1	0	Unmodified	1034.5648	0.56481189	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		17.833	17.833	2	0.00035864	10406	DP1063-9	125.31	50.125			7.3823	7.5877	NaN	1	0	Median	69684000	8180400	61503000	2323	193	2196	5410	11227;11228;11229;11230	11229		4	9606
PLISVYSEKGESSGK	2	0	Unmodified	1579.8094	0.80935227	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		16.211	16.211	2;3	6.9482E-17	8274	DP1063-9	198.97	148.18			NaN	NaN	NaN	0	0	Median	63871000	0	63871000	2324	193	2197	5411;5412	11231;11232;11233;11234	11234		4	9606
PLLSFDPAFDELPHYALLK	1	0	Unmodified	2185.1459	0.14594254	459	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		23.658	23.658	3	0.0028454	18011	DP1063-9	101.08	80.722			NaN	NaN	NaN	0	0	Median	2642000	0	2642000	2325	459	2198	5413	11235	11235		1	9606
PLPVALQTR	0	1	Unmodified	993.59712	0.59711507	62	O60828	PQBP1	Polyglutamine-binding protein 1	yes	yes	0	0	0	4	0				1		17.636	17.636	2	0.0077269	10142	DP1063-9	116.25	48.269			NaN	NaN	NaN	0	0	Median	10039000	0	10039000	2326	62	2199	5414	11236;11237	11237		2	9606
PLVLPSPLVTPGSNSQER	0	1	Unmodified	1890.0211	0.021076378	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				20.74	20.74	2	1.7131E-06	14104	DP1063-7	151.7	114.85			NaN	NaN	NaN	0	0	Median	17492000	0	17492000	2327	482	2200	5415	11238;11239	11238		2	9606
PMFIVNTNVPR	0	1	Oxidation (M)	1302.6754	0.67544174	139	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	1	0	5	0					1	18.343	18.343	2	0.00016701	11470	DP1063-10	109.29	109.29			0.55	0.39669	NaN	1	0	Median	22744000	13764000	8979700	2328	139	2201	5416	11240;11241;11242	11241	171	3	9606
PMFIVNTNVPR	0	1	Acetyl (Protein N-term);Oxidation (M)	1344.686	0.68600643	139	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	1	1	0	5	0					1	19.254	19.254	2	0.0057811	12766	DP1063-10	64.654	26.361			0.60967	0.43973	NaN	1	0	Median	17641000	11038000	6603200	2329	139	2201	5417	11243;11244	11243	171	2	9606
PMFIVNTNVPR	0	1	Unmodified	1286.6805	0.68052712	139	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	5	0					1	19.521	19.521	2	0.00063571	13061	DP1063-10	92.838	50.239			0.62438	0.45034	NaN	1	0	Median	6870700	4174300	2696300	2330	139	2201	5418	11245	11245		1	9606
PPYTVVYFPVR	0	1	Unmodified	1336.718	0.71795849	117	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	0	0	5	0					1	20.981	20.981	2	2.95E-05	14954	DP1063-10	131.11	131.11			0.55857	0.40287	NaN	1	0	Median	16838000	10443000	6394500	2331	117	2202	5419	11246;11247;11248;11249	11246		4	9606
PSQGIYMVYCR	0	1	Oxidation (M)	1388.6217	0.62169161	445	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	1	0	2	0		2				15.212	15.212	2	0.025914	6621	DP1063-7	97.431	66.633			NaN	NaN	NaN	0	0	Median	67487000	67487000	0	2332	445	2203	5420;5421	11250;11251	11251	536	2	9606
PVLNFYEANFPANVMDVIAR	0	1	Oxidation (M)	2295.1358	0.13578856	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	3	0			2			23.438	23.438	2;3	1.8614E-11	17601	DP1063-8	162.29	128.11			NaN	NaN	NaN	0	0	Median	15709000	0	15709000	2333	148	2204	5422;5423	11252;11253;11254	11253	177	3	9606
PVSSAASVYAGAGGSGSR	0	1	Unmodified	1579.759	0.75904803	100	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		15.834	15.834	2	0.00023508	7828	DP1063-9	125.03	105.9			1.7126	1.7914	NaN	1	0	Median	22310000	9350100	12960000	2334	100	2205	5424	11255;11256	11256		2	9606
QAASSLQQASLK	1	0	Unmodified	1230.6568	0.65681479	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				15.182	15.182	2	0.00069522	6540	DP1063-7	111.27	111.27			1.9671	2.0269	NaN	1	0	Median	39160000	17058000	22102000	2335	198	2206	5425	11257;11258;11259;11260	11257		4	9606
QADVFPDRDHFGR	0	2	Unmodified	1558.7277	0.72768832	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			16.264	16.264	2;3	1.572E-09	8364	DP1063-8	149.94	132.08			0.93567	0.95138	0.45481	2	0	Median	524560000	268810000	255750000	2336	524	2207	5426;5427	11261;11262;11263;11264	11264		4	9606
QAEETVDFKK	2	0	Unmodified	1193.5928	0.59281755	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0		2				14.111	14.111	2;3	0.0084094	5104	DP1063-7	93.058	53.879			NaN	NaN	NaN	0	0	Median	48172000	0	48172000	2337	418	2208	5428;5429	11265;11266;11267	11265		3	9606
QAEVLAEFER	0	1	Unmodified	1190.5932	0.5931519	50	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			19.153	19.153	2	0.047705	12087	DP1063-8	79.974	39.972			NaN	NaN	NaN	0	0	Median	7864600	0	7864600	2338	50	2209	5430	11268	11268		1	9606
QAHLTNQYMQR	0	1	Oxidation (M)	1404.6568	0.65683157	131	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	1	0	2.5	0.5		1	1			13.309	13.309	3	0.00028047	4561	DP1063-8	88.056	60.794			4.7514	4.9233	NaN	1	0	Median	19478000	2611800	16866000	2339	131	2210	5431;5432	11269;11270;11271	11270	167	3	9606
QAQAAVLAVLPR	0	1	Unmodified	1235.735	0.73500553	489	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		19.678	19.678	2	0.0052535	12872	DP1063-9	113.62	55.662			NaN	NaN	NaN	0	0	Median	13809000	0	13809000	2340	489	2211	5433	11272;11273	11273		2	9606
QAVDVSPLR	0	1	Unmodified	983.53999	0.53999412	218	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	16.504	16.504	2	0.013089	9118	DP1063-10	78.149	42.711			4.814	3.4722	NaN	1	0	Median	28687000	7729100	20958000	2341	218	2212	5434	11274;11275	11275		2	9606
QAVTNPNNTFYATK	1	0	Unmodified	1567.7631	0.76307078	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				16.396	16.396	2	0.0013964	8232	DP1063-7	128.36	85.645			NaN	NaN	NaN	0	0	Median	39030000	0	39030000	2342	198	2213	5435	11276	11276		1	9606
QCPTENMAR	0	1	Unmodified	1105.4645	0.46446269	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	2	1	1		1			14.974	14.974	2	0.046737	4898	DP1063-6	81.784	51.466			NaN	NaN	NaN	0	0	Median	478200000	478200000	0	2343	54	2214	5436;5437	11277;11278	11277		2	9606
QDAQSLHGDIPQK	1	0	Unmodified	1435.7056	0.7055559	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		2				14.496	14.496	2;3	3.8247E-07	5609	DP1063-7	160.72	103.81			NaN	NaN	NaN	0	0	Median	43119000	0	43119000	2344	531	2215	5438;5439	11279;11280;11281	11280		3	9606
QDDPFELFIAATNIR	0	1	Unmodified	1748.8733	0.87334951	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				25.751	25.751	2	3.7178E-05	20467	DP1063-7	143.76	101.66			NaN	NaN	NaN	0	0	Median	4362500	0	4362500	2345	514	2216	5440	11282;11283	11282		2	9606
QEGIIFIGPPPSAIR	0	1	Unmodified	1593.8879	0.88787736	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	1.12		1	1	1	1	21.441	21.441	2	4.3742E-58	14960	DP1063-7	253.97	253.97			0.81687	0.8224	4.0663	3	0	Plateau	199190000	107930000	91258000	2346	483	2217	5441;5442;5443;5444	11284;11285;11286;11287;11288;11289;11290;11291;11292	11286		9	9606
QEIECQNQEYSLLLSIK	1	0	Unmodified	2094.0303	0.030320436	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0			1			21.793	21.793	2	8.653E-28	15507	DP1063-8	206.18	171.22		+	NaN	NaN	NaN	0	0	Median	15395000	15395000	0	2347	19	2218	5445	11293	11293		1	9606
QELSHALYQHDAACR	0	1	Unmodified	1797.8217	0.82166506	560	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	3	0			2			14.802	14.802	2;4	0.0019924	6594	DP1063-8	107.65	62.881			NaN	NaN	NaN	0	0	Median	14198000	0	14198000	2348	560	2219	5446;5447	11294;11295;11296	11296		3	9606
QEPERNECFLSHK	1	1	Unmodified	1672.7628	0.7627532	12	CON__P02769			yes	yes	0	0	1	3	0			2			14.152	14.152	2;3	5.5436E-06	5602	DP1063-8	156.01	112.06		+	NaN	NaN	NaN	0	0	Median	226530000	226530000	0	2349	12	2220	5448;5449	11297;11298;11299	11298		3	
QEPERNECFLSHKDDSPDLPK	2	1	Unmodified	2540.1602	0.16016541	12	CON__P02769			yes	yes	0	0	2	2.25	0.968	2	3	2	1		15.81	15.81	2;3;4	9.1073E-17	7731	DP1063-8	180.11	154.24		+	NaN	NaN	NaN	0	0	Median	3698899999.9999995	3698899999.9999995	0	2350	12	2221	5450;5451;5452;5453;5454;5455;5456;5457	11300;11301;11302;11303;11304;11305;11306;11307;11308;11309;11310;11311;11312;11313	11312		14	
QESGSEIHVEVK	1	0	Unmodified	1340.6572	0.65720872	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.75	0.829	2	1	1			14.696	14.696	2;3	0.0038813	5925	DP1063-7	125.68	53.439			NaN	NaN	NaN	0	0	Median	35777000	0	35777000	2351	211	2222	5458;5459;5460;5461	11314;11315;11316;11317;11318	11317		5	9606
QEYDESGPSIVHR	0	1	Unmodified	1515.6954	0.69538514	252	P63261;P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39	ACTG1;ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J	yes	no	0	0	0	4	0				2		15.477	15.477	2;3	0.00069169	7215	DP1063-9	109.6	91.396			0.84384	0.88269	NaN	1	0	Median	67347000	39114000	28233000	2352	252	2223	5462;5463	11319;11320;11321;11322;11323;11324	11320		6	9606
QFSQYIK	1	0	Unmodified	912.47052	0.47051757	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		16.712	16.712	2	0.04074	8881	DP1063-9	106.42	51.804			NaN	NaN	NaN	0	0	Median	0	0	0	2353	214	2224	5464	11325	11325		1	9606
QFSSADEAALKEPIIK	2	0	Unmodified	1745.92	0.91996535	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		17.931	17.931	2;3	4.0489E-58	10405	DP1063-8	255.54	255.54			1.0218	0.98406	4.8292	3	0	Plateau	1053199999.9999999	531660000	521550000	2354	524	2225	5465;5466;5467	11326;11327;11328;11329;11330;11331;11332;11333;11334;11335;11336;11337	11332		12	9606
QFVSSSTTVNR	0	1	Unmodified	1224.6099	0.6098646	11	CON__P02672			yes	yes	0	0	0	5	0					1	14.96	14.96	2	0.0066302	7320	DP1063-10	125.16	76.877		+	NaN	NaN	NaN	0	0	Median	5694100	5694100	0	2355	11	2226	5468	11338	11338		1	
QGDEVSVHYDPMIAK	1	0	Oxidation (M)	1703.7825	0.78248559	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		1				16.569	16.569	2	0.00043146	8348	DP1063-7	142.1	142.1			1.0316	1.063	NaN	1	0	Median	43898000	22500000	21397000	2356	483	2227	5469	11339;11340;11341;11342	11339	561	4	9606
QGGGGGGGSVPGIER	0	1	Unmodified	1283.6218	0.62182627	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2	0		1				15.175	15.175	2	0.0030311	6516	DP1063-7	91.202	72.422			1.1214	1.1487	NaN	1	0	Median	52722000	21185000	31536000	2357	236	2228	5470	11343;11344;11345	11344		3	9606
QGPLHGMLINTPYVTK	1	0	Oxidation (M)	1783.9291	0.92909025	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				17.689	17.689	2;3	0.00057129	8187	DP1063-6	107.39	107.39			1.0418	1.0681	32.291	2	0	Median	153060000	79833000	73226000	2358	355	2229	5471;5472	11346;11347;11348;11349;11350	11348	445	5	9606
QGPLHGMLINTPYVTK	1	0	Unmodified	1767.9342	0.93417563	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					19.003	19.003	2;3	0.001214	10049	DP1063-6	89.506	89.506			0.80939	0.82566	8.7042	2	0	Median	98435000	53125000	45309000	2359	355	2229	5473;5474	11351;11352;11353;11354;11355;11356;11357	11354		7	9606
QGTIFLAGPPLVK	1	0	Unmodified	1339.7864	0.7863724	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.874	20.874	2	0.00029116	14264	DP1063-8	141.91	141.91			0.9444	0.96087	0.96755	2	0	Median	142780000	70258000	72517000	2360	524	2230	5475;5476	11358;11359;11360;11361;11362;11363;11364;11365	11360		8	9606
QGYVIYR	0	1	Unmodified	897.47085	0.47085192	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	16.573	16.573	2	0.00052074	9167	DP1063-10	132.72	64.684			NaN	NaN	NaN	0	0	Median	36787000	0	36787000	2361	257	2231	5477	11366;11367	11366		2	9606
QIFNGTFVK	1	0	Unmodified	1052.5655	0.56548059	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		18.566	18.566	2	0.0032249	11390	DP1063-9	91.069	53.909			12.125	12.462	NaN	1	0	Median	66444000	7141200	59303000	2362	152	2232	5478	11368;11369	11369		2	9606
QIGVEHVVVYVNK	1	0	Unmodified	1482.8195	0.81946344	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		17.313	17.313	2	0.014678	9679	DP1063-9	101.3	72.718			NaN	NaN	NaN	0	0	Median	0	0	0	2363	226	2233	5479	11370	11370		1	9606
QIIISEIISSLPSIVNDK	1	0	Unmodified	1968.1143	0.11430806	403	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	3	0			1			25.841	25.841	2	5.0161E-06	20436	DP1063-8	144.27	116.6			NaN	NaN	NaN	0	0	Median	3468700	0	3468700	2364	403	2234	5480	11371;11372	11371		2	9606
QILDPAASVTGSR	0	1	Unmodified	1313.6939	0.69392858	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.001	18.001	2	0.0015789	10295	DP1063-7	131.83	77.41			NaN	NaN	NaN	0	0	Median	18061000	0	18061000	2365	211	2235	5481	11373;11374	11373		2	9606
QILDSAASLTGSK	1	0	Unmodified	1289.6827	0.68269519	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				18.11	18.11	2	2.5087E-10	8818	DP1063-6	182.92	100.95			NaN	NaN	NaN	0	0	Median	51833000	0	51833000	2366	211	2236	5482;5483	11375;11376;11377	11376		3	9606
QINVSTDDSEVK	1	0	Unmodified	1333.6361	0.63613893	50	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			15.441	15.441	2	0.023341	7328	DP1063-8	89.827	58.54			NaN	NaN	NaN	0	0	Median	26220000	0	26220000	2367	50	2237	5484	11378	11378		1	9606
QINWTVLYR	0	1	Unmodified	1191.64	0.64004252	321	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	21.081	21.081	2	0.00011447	15088	DP1063-10	134.81	112.68			7.5498	5.4454	NaN	1	0	Median	93004000	10650000	82354000	2368	321	2238	5485	11379;11380;11381;11382	11382		4	9606
QISNLQQSISDAEQR	0	1	Unmodified	1715.8438	0.84384029	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3.5	1.12		1	1	1	1	18.372	18.372	2	1.4629000000000001E-62	11097	DP1063-9	283.43	225.64		+	NaN	NaN	NaN	0	0	Median	123440000	123440000	0	2369	88	2239	5486;5487;5488;5489	11383;11384;11385;11386;11387;11388;11389	11388		7	9606
QITIIDSPSFIVSPLNSSSALALR	0	1	Unmodified	2528.385	0.38500361	505	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	3	0			1			24.151	24.151	2	6.9938E-29	18448	DP1063-8	179.74	111.7			NaN	NaN	NaN	0	0	Median	0	0	0	2370	505	2240	5490	11390	11390		1	9606
QITLNDLPVGR	0	1	Unmodified	1224.6826	0.68263561	358	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					1	19.597	19.597	2	3.2962E-05	13154	DP1063-10	128.35	103.57			1.792	1.2925	NaN	1	0	Median	17776000	5607000	12169000	2371	358	2241	5491	11391;11392	11392		2	9606
QITVNDLPVGR	0	1	Unmodified	1210.667	0.66698555	341	Q06830;P32119	PRDX1;PRDX2	Peroxiredoxin-1;Peroxiredoxin-2	yes	no	0	0	0	5	0					1	18.449	18.449	2	0.0003051	11646	DP1063-10	112.11	112.11			1.691	1.2196	NaN	1	0	Median	43157000	15266000	27891000	2372	341	2242	5492	11393;11394	11393		2	9606
QKADEAYLIGR	1	1	Unmodified	1262.6619	0.66190017	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				16.073	16.073	2	0.00056775	7787	DP1063-7	134.05	101.05			0.86629	0.90709	NaN	1	0	Median	164120000	86135000	77981000	2373	130	2243	5493	11395;11396;11397;11398	11398		4	9606
QKLDPAASVTGSK	2	0	Unmodified	1300.6987	0.69867961	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	1.5	0.5	1	1				14.612	14.612	2;3	0.023555	4399	DP1063-6	74.649	42.581			NaN	NaN	NaN	0	0	Median	28502000	0	28502000	2374	211	2244	5494;5495	11399;11400	11399		2	9606
QKVDSLLENLEK	2	0	Unmodified	1414.7668	0.76675917	111	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		18.782	18.782	3	0.055115	11754	DP1063-9	46.378	46.378			2.5374	2.6842	NaN	1	0	Median	15712000	4146700	11566000	2375	111	2245	5496	11401	11401		1	9606
QKVEGTEPTTAFNLFVGNLNFNK	2	0	Unmodified	2567.302	0.30200227	155	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.33	0.471		2	1			22.637	22.637	2;3	1.2388E-15	16504	DP1063-7	164.94	164.94			9.0439	9.333	NaN	1	0	Median	60904000	5185900	55718000	2376	155	2246	5497;5498;5499	11402;11403;11404;11405;11406	11402		5	9606
QLASGLLLVTGPLVLNR	0	1	Unmodified	1763.0669	0.066904359	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				4		23.813	23.813	2;3	1.7082E-48	18073	DP1063-9	239.48	239.48			9.9179	10.375	17.72	2	0	Median	99022000	7285400	91736000	2377	336	2247	5500;5501;5502;5503	11407;11408;11409;11410;11411;11412;11413;11414;11415	11408		9	9606
QLDDLKVELSQLR	1	1	Unmodified	1555.857	0.85697116	208	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	1	5	0					2	20.107	20.107	2;3	6.1577E-41	13850	DP1063-10	267.39	225.68			8.8391	8.7232	NaN	1	0	Median	68796000	6246700	62549000	2378	208	2248	5504;5505	11416;11417;11418;11419	11419		4	9606
QLEEAEEEAQR	0	1	Unmodified	1330.6001	0.60008777	191	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					14.728	14.728	2	0.0039801	4577	DP1063-6	132.88	87.895			NaN	NaN	NaN	0	0	Median	3239800	3239800	0	2379	191	2249	5506	11420;11421	11421		2	9606
QLFHPEQLITGK	1	0	Unmodified	1409.7667	0.76669959	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			2			18.976	18.976	2;3	9.5382E-05	11914	DP1063-8	134.84	0			3.0115	3.0331	4.9716	2	0	Median	242670000	55407000	187260000	2380	310;434;492	2250	5507;5508	11422;11423;11424;11425	11424		4	9606
QLFHPEQLITGKEDAANNYAR	1	1	Unmodified	2414.1979	0.19787154	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	3.4	0.49			3	2		18.527	18.527	2;3;4	1.4196999999999999E-43	11251	DP1063-8	228.17	177.38			2.8757	2.8042	15.068	4	0	Median	609160000	147590000	461570000	2381	310;434;492	2251	5509;5510;5511;5512;5513	11426;11427;11428;11429;11430;11431;11432;11433;11434;11435;11436;11437;11438;11439;11440;11441	11438		16	9606
QLKDNTCVVEFQFMLPTSHPNR	1	1	Oxidation (M)	2676.2788	0.27884076	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					19.609	19.609	4	0.00021144	10851	DP1063-6	86.189	86.189			0.75032	0.79239	NaN	1	0	Median	105060000	61514000	43547000	2382	355	2252	5514	11442;11443	11442	414	2	9606
QLKDNTCVVEFQFMLPTSHPNR	1	1	Unmodified	2660.2839	0.28392614	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					20.298	20.298	3;4	0.00068893	11639	DP1063-6	76.678	63.3			0.95103	1.0044	NaN	1	0	Median	23870000	7371500	16498000	2383	355	2252	5515;5516	11444;11445;11446	11444		3	9606
QLLQANPILEAFGNAK	1	0	Unmodified	1725.9414	0.94136949	191	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	1	0	1					23.119	23.119	2	0.0030677	15186	DP1063-6	102.4	54.486			NaN	NaN	NaN	0	0	Median	0	0	0	2384	191	2253	5517	11447	11447		1	9606
QLLQVIQEK	1	0	Unmodified	1097.6445	0.64445919	516	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				18.317	18.317	2	0.028271	10844	DP1063-7	90.601	39.898			NaN	NaN	NaN	0	0	Median	20697000	0	20697000	2385	516	2254	5518	11448	11448		1	9606
QLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLR	0	1	Oxidation (M)	3575.8042	0.80423067	84	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	1	0	4	0				1		22.649	22.649	3	0.00028371	16780	DP1063-9	65.587	41.395			NaN	NaN	NaN	0	0	Median	2820500	0	2820500	2386	84	2255	5519	11449	11449	72	1	9606
QLSQSLLPAIVELAEDAK	1	0	Unmodified	1924.0517	0.051707805	182	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	3	0			1			25.204	25.204	3	0.0094882	19679	DP1063-8	86.179	53.254			NaN	NaN	NaN	0	0	Median	2550600	0	2550600	2387	182	2256	5520	11450	11450		1	9606
QLTEEDGVHSVIEENIK	1	0	Unmodified	1938.9535	0.95345032	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3.2	1.54	2	2	1	2	3	18.289	18.289	2;3	9.5342E-196	9011	DP1063-6	332.56	332.56			0.93689	0.96055	22.711	8	0	Median	765000000	375190000	389810000	2388	355	2257	5521;5522;5523;5524;5525;5526;5527;5528;5529;5530	11451;11452;11453;11454;11455;11456;11457;11458;11459;11460;11461;11462;11463;11464;11465;11466;11467;11468;11469;11470;11471;11472;11473;11474;11475;11476;11477;11478;11479;11480;11481;11482	11461		32	9606
QLVGTVSSK	1	0	Unmodified	917.5182	0.51819605	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	0.816		1	1	1		14.317	14.317	2	0.00075823	5332	DP1063-7	94.85	57.291			60.127	61.956	NaN	1	0	Median	326450000	5088900	321360000	2389	418	2258	5531;5532;5533	11483;11484;11485;11486;11487;11488	11483		6	9606
QLYQTLTDYDIR	0	1	Unmodified	1527.7569	0.75692277	312	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	4	0				1		20.165	20.165	2	0.0027374	13613	DP1063-9	130.98	85.846			NaN	NaN	NaN	0	0	Median	14067000	0	14067000	2390	312	2259	5534	11489;11490	11490		2	9606
QLYTVTMDVHSR	0	1	Oxidation (M)	1464.7031	0.70311306	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				15.66	15.66	2	0.019835	7182	DP1063-7	99.752	56.444			NaN	NaN	NaN	0	0	Median	6868400	0	6868400	2391	514	2260	5535	11491	11491	589	1	9606
QMEQISQFLQAAER	0	1	Oxidation (M)	1693.8094	0.80936904	196	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	20.66	20.66	2	5.1692E-15	14542	DP1063-10	214.04	125.91			NaN	NaN	NaN	0	0	Median	11670000	0	11670000	2392	196	2261	5536	11492;11493	11493	220	2	9606
QNLAEMGLAVDPNR	0	1	Oxidation (M)	1542.746	0.7460405	578	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	1	0	5	0					1	17.591	17.591	2	0.012272	10521	DP1063-10	100.04	66.998			NaN	NaN	NaN	0	0	Median	6408600	0	6408600	2393	578	2262	5537	11494;11495	11494	630	2	9606
QNQTTSAVSTPASSETSK	1	0	Unmodified	1822.8545	0.85446456	229	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	1	0	1					14.018	14.018	2	0.003552	3717	DP1063-6	108.36	64.938			NaN	NaN	NaN	0	0	Median	1438700	0	1438700	2394	229	2263	5538	11496	11496		1	9606
QPLALNVAYR	0	1	Unmodified	1143.64	0.64004252	350	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		18.456	18.456	2	0.048373	11256	DP1063-9	83.206	38.829			NaN	NaN	NaN	0	0	Median	0	0	0	2395	350	2264	5539	11497	11497		1	9606
QPTIFQNK	1	0	Unmodified	974.51853	0.5185304	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	16.057	16.057	2	0.018512	8530	DP1063-10	76.774	27.351			5.603	3.3239	NaN	1	0	Median	49513000	8880400	40633000	2396	275	2265	5540	11498;11499	11498		2	9606
QPYAVSELAGHQTSAESWGTGR	0	1	Unmodified	2331.088	0.087986745	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3.5	0.5			2	2		18.334	18.334	2;3	1.3615999999999998E-169	11059	DP1063-9	356.15	307.92			NaN	NaN	NaN	0	0	Median	172550000	0	172550000	2397	193	2266	5541;5542;5543;5544	11500;11501;11502;11503;11504;11505	11504		6	9606
QQHQEEEDILDVRDEK	1	1	Unmodified	2009.929	0.92902649	424	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3	0			1			16.09	16.09	3	0.0023614	8192	DP1063-8	101.53	61.546			NaN	NaN	NaN	0	0	Median	14844000	0	14844000	2398	424	2267	5545	11506	11506		1	9606
QQIQSIQQSIER	0	1	Unmodified	1456.7634	0.76340513	246	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	5	0					1	17.14	17.14	2	4.1203E-06	9913	DP1063-10	162.36	113.56			NaN	NaN	NaN	0	0	Median	8139200	0	8139200	2399	246	2268	5546	11507;11508	11507		2	9606
QQQEELEAEHGTGDKPAAPR	1	1	Unmodified	2190.0301	0.030137515	374	Q13895	BYSL	Bystin	yes	yes	0	0	1	3.5	0.5			1	1		13.892	13.892	4	0.028722	5141	DP1063-9	60.528	34.533			NaN	NaN	NaN	0	0	Median	31036000	0	31036000	2400	374	2269	5547;5548	11509;11510	11510		2	9606
QQSAQSQVSTTAENK	1	0	Unmodified	1605.7594	0.75944196	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1.5	0.5	1	1				13.382	13.382	2	2.9428E-62	4123	DP1063-7	278.38	234.73			NaN	NaN	NaN	0	0	Median	25704000	0	25704000	2401	514	2270	5549;5550	11511;11512;11513;11514	11514		4	9606
QQTQHAVEGDCDIHVLK	1	0	Unmodified	1976.9374	0.9374231	15	CON__P12763			yes	yes	0	0	0	3	0			1			15.184	15.184	3	0.0039682	6996	DP1063-8	95.751	72.422		+	NaN	NaN	NaN	0	0	Median	59035000	59035000	0	2402	15	2271	5551	11515;11516	11515		2	9606
QSGEAFVELGSEDDVK	1	0	Unmodified	1708.7792	0.77917435	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				2		18.943	18.943	2	5.8596E-09	11923	DP1063-9	164.48	112.95			NaN	NaN	NaN	0	0	Median	20016000	0	20016000	2403	239	2272	5552;5553	11517;11518;11519	11518		3	9606
QSLEASLAETEGR	0	1	Unmodified	1389.6736	0.67358707	16	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.5	0.5			1	1		18.145	18.145	2	2.2625E-07	10808	DP1063-9	164.65	125.87		+	NaN	NaN	NaN	0	0	Median	63579000	63579000	0	2404	16	2273	5554;5555	11520;11521;11522;11523	11523		4	9606
QSLETICLLLAYK	1	0	Unmodified	1550.8378	0.83781563	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		23.119	23.119	2	2.2579E-07	17195	DP1063-8	164.66	94.265			NaN	NaN	NaN	0	0	Median	35785000	0	35785000	2405	194;264;265	2274	5556;5557	11524;11525;11526	11525		3	9606
QSNVAAPGDATPPAEK	1	0	Unmodified	1551.7529	0.75290002	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2.5	0.5		1	1			14.564	14.564	2	3.2983E-08	5780	DP1063-7	156.52	105.73			NaN	NaN	NaN	0	0	Median	4151500	0	4151500	2406	482	2275	5558;5559	11527;11528	11527		2	9606
QSNVAAPGDATPPAEKK	2	0	Unmodified	1679.8479	0.84786304	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				13.586	13.586	3	0.04865	4469	DP1063-7	64.52	17.556			NaN	NaN	NaN	0	0	Median	7097000	0	7097000	2407	482	2276	5560	11529	11529		1	9606
QSPNSYVVIMNGSCVEVDVHR	0	1	Oxidation (M)	2405.1104	0.11037845	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	5					18.274	18.274	2;3	1.9931E-13	9060	DP1063-6	152.34	111.79			0.79845	0.81793	NaN	1	0	Median	69727000	42122000	27605000	2408	355	2277	5561;5562;5563;5564;5565	11530;11531;11532;11533;11534;11535;11536;11537;11538	11536	446	9	9606
QSVEADINGLRR	0	2	Unmodified	1356.711	0.71097563	16	CON__P13645;P13645;CON__P02535-1;CON__P08730-1;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1	KRT10;KRT13	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13	yes	no	0	0	1	2.5	1.5	1			1		16.777	16.777	3	0.040357	7108	DP1063-6	65.842	36.543		+	NaN	NaN	NaN	0	0	Median	56830000	56830000	0	2409	16	2278	5566;5567	11539;11540	11539		2	9606
QSVENDIHGLRK	1	1	Unmodified	1394.7266	0.72662569	100	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	4	0				1		14.454	14.454	3	0.016161	5895	DP1063-9	49.632	2.5696			1.2207	1.1544	NaN	1	0	Median	10740000	4330100	6409800	2410	100	2279	5568	11541	11541		1	9606
QTALVELLK	1	0	Unmodified	1013.6121	0.61209643	12	CON__P02769			yes	yes	0	0	0	3	1.2	1	1	3	1	1	20.983	20.983	1;2	2.1042E-06	13265	DP1063-8	218.55	43.172		+	NaN	NaN	NaN	0	0	Median	10208000000	10208000000	0	2411	12	2280	5569;5570;5571;5572;5573;5574;5575	11542;11543;11544;11545;11546;11547;11548;11549;11550;11551;11552;11553;11554;11555;11556;11557;11558;11559;11560;11561;11562	11559		21	
QTALVELLKHKPK	3	0	Unmodified	1503.9137	0.91369818	12	CON__P02769			yes	yes	0	0	2	2.5	0.5		1	1			16.573	16.573	3	0.010994	8827	DP1063-8	106.26	76.917		+	NaN	NaN	NaN	0	0	Median	146760000	146760000	0	2412	12	2281	5576;5577	11563;11564;11565	11564		3	
QTATQLLK	1	0	Unmodified	901.52328	0.52328142	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		15.463	15.463	2	0.002155	7172	DP1063-9	98.629	31.83			12.121	12.458	NaN	1	0	Median	129660000	9048900	120610000	2413	280	2282	5578	11566;11567	11567		2	9606
QTFEAAILTQLHPR	0	1	Unmodified	1623.8733	0.87328993	525	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	4.5	0.5				1	1	20.857	20.857	3	0.0013347	14492	DP1063-9	115.83	66.582			NaN	NaN	NaN	0	0	Median	12974000	0	12974000	2414	525	2283	5579;5580	11568;11569;11570	11570		3	9606
QTIQYIHPADAVK	1	0	Unmodified	1482.7831	0.78307794	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		2				16.378	16.378	2	0.010147	8194	DP1063-7	115.91	69.508			NaN	NaN	NaN	0	0	Median	0	0	0	2415	514	2284	5581;5582	11571;11572	11572		2	9606
QTMLFSATQTR	0	1	Oxidation (M)	1298.6289	0.62888548	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	1	0	2	0		1				16.763	16.763	2	0.011569	8740	DP1063-7	117.52	82.368			NaN	NaN	NaN	0	0	Median	39891000	0	39891000	2416	537	2285	5583	11573	11573	618	1	9606
QTPAPAASVTGSR	0	1	Unmodified	1241.6364	0.6364137	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				14.463	14.463	2	0.0021615	5481	DP1063-7	127.83	97.144			NaN	NaN	NaN	0	0	Median	29730000	0	29730000	2417	211	2286	5584;5585	11574;11575;11576;11577	11576		4	9606
QTPNDLTGEHSCIMLK	1	0	Oxidation (M)	1858.8553	0.85533296	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				16.687	16.687	3	0.054297	8598	DP1063-7	55.851	24.271			NaN	NaN	NaN	0	0	Median	17069000	0	17069000	2418	514	2287	5586	11578	11578		1	9606
QTQIFTTYSDNQPGVLIQVYEGER	0	1	Unmodified	2785.3559	0.35588833	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			3			22.417	22.417	2;3	1.4756E-104	16283	DP1063-8	276.63	276.63			3.8152	3.9532	20.542	2	0	Median	97384000	15069000	82315000	2419	124	2288	5587;5588;5589	11579;11580;11581;11582;11583	11581		5	9606
QTQTFTTYSDNQPGVLIQVYEGER	0	1	Unmodified	2773.3195	0.31950282	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			3			21.665	21.665	2	8.5607E-48	15325	DP1063-8	224.55	200.35			2.5321	2.6237	NaN	1	0	Median	28961000	9028600	19933000	2420	128	2289	5590;5591;5592	11584;11585;11586;11587	11585		4	9606
QTTTGSAVPIR	0	1	Unmodified	1129.6091	0.60913632	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.796	14.796	2	0.00028183	4634	DP1063-6	113.18	81.947			0.85094	0.89174	NaN	1	0	Median	10078000	5083600	4994600	2421	38	2290	5593	11588;11589	11588		2	9606
QTYSTEPNNLK	1	0	Unmodified	1293.6201	0.62009493	216	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	5	0					1	14.722	14.722	2	9.7402E-16	6960	DP1063-10	185.58	185.58			7.5234	4.4631	NaN	1	0	Median	45676000	5415800	40260000	2422	216	2291	5594	11590;11591;11592;11593	11590		4	9606
QVAEQFLNMR	0	1	Oxidation (M)	1250.6078	0.60775611	162	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	4	0				1		17.566	17.566	2	0.013367	9995	DP1063-9	67.494	34.653			1.074	1.1234	NaN	1	0	Median	13589000	7962300	5626600	2423	162	2292	5595	11594	11594	191	1	9606
QVFFELNGQLR	0	1	Unmodified	1349.7092	0.70918471	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		20.85	20.85	2	2.2165E-16	14285	DP1063-7	195.32	195.32			0.9136	0.93633	11.159	2	0	Median	202730000	107640000	95081000	2424	130	2293	5596;5597	11595;11596;11597;11598;11599	11598		4	9606
QVGYENAGTVEFLVDR	0	1	Unmodified	1795.8741	0.87407779	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.18	0.513		15	1	1		28.267	28.267	2;3	3.6929E-87	14287	DP1063-7	283.47	243.46			0.94239	0.96351	5.2167	6	0	Median	602960000	301870000	301090000	2425	130	2294	5598;5599;5600;5601;5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614	11600;11601;11602;11603;11604;11605;11606;11607;11608;11609;11610;11611;11612;11613;11614;11615;11616;11617;11618;11619;11620;11621;11622;11623;11624;11625	11602		26	9606
QVHPDTGISSK	1	0	Unmodified	1167.5884	0.58840088	61;106	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					1	12.901	12.901	2	1.7182E-07	4883	DP1063-10	163.88	91.999			2.9195	1.7319	NaN	1	0	Median	39085000	9613100	29472000	2426	61;106	2295	5615	11626;11627;11628;11629;11630	11627		5	9606
QVLDNLTMEK	1	0	Oxidation (M)	1205.5962	0.59618837	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	1	1		1			17.047	17.047	2	0.017786	7467	DP1063-6	106.88	71.442		+	NaN	NaN	NaN	0	0	Median	89462000	89462000	0	2427	19	2296	5616;5617	11631;11632;11633;11634	11631	13	4	9606
QVLIASHLPSYELR	0	1	Unmodified	1624.8937	0.89369102	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.17	0.373	10	2				25.402	25.402	2;3	1.1475000000000001E-69	9937	DP1063-6	263.07	236.09			0.91882	0.92462	14.107	8	0	Median	1561899999.9999998	825110000	736790000	2428	355	2297	5618;5619;5620;5621;5622;5623;5624;5625;5626;5627;5628;5629	11635;11636;11637;11638;11639;11640;11641;11642;11643;11644;11645;11646;11647;11648;11649;11650;11651;11652;11653;11654;11655;11656;11657	11636		22	9606
QVNITVQK	1	0	Unmodified	928.53418	0.53418046	547	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	0	1					14.862	14.862	2	0.020947	4773	DP1063-6	75.109	31.301			2.4024	2.4507	NaN	1	0	Median	8797000	2176100	6620900	2429	547	2298	5630	11658;11659	11658		2	9606
QVNYEVDR	0	1	Unmodified	1021.4829	0.48287317	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.904	14.904	2	0.00055476	4756	DP1063-6	134.48	105.75			0.95926	0.97574	NaN	1	0	Median	113690000	55917000	57777000	2430	355	2299	5631	11660;11661;11662;11663	11660		4	9606
QVNYEVDRR	0	2	Unmodified	1177.584	0.5839842	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					13.835	13.835	2	4.4669E-15	3421	DP1063-6	176.09	142.71			1.0209	1.0386	NaN	1	0	Median	99519000	49966000	49553000	2431	355	2300	5632	11664;11665;11666;11667	11665		4	9606
QVPNESFFNFFNPLK	1	0	Unmodified	1826.8992	0.89917033	487	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			24.792	24.792	2	0.0034682	19238	DP1063-8	111.27	66.652			NaN	NaN	NaN	0	0	Median	3824400	0	3824400	2432	487	2301	5633	11668;11669	11668		2	9606
QVQAEVPGSPIFVMR	0	1	Oxidation (M)	1672.8607	0.86067633	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.2	0.4	4	1				19.684	19.684	2;3	1.2892E-06	10406	DP1063-6	164.04	164.04			0.82959	0.85083	2.5883	4	0	Median	583730000	322020000	261710000	2433	355	2302	5634;5635;5636;5637;5638	11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680;11681;11682	11671	447	13	9606
QVQAEVPGSPIFVMR	0	1	Unmodified	1656.8658	0.86576171	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				21.716	21.716	2	2.6741E-86	12231	DP1063-6	275.76	275.76			0.74185	0.76392	19.232	2	0	Median	154580000	88507000	66078000	2434	355	2302	5639;5640;5641	11683;11684;11685;11686;11687;11688;11689;11690	11683		8	9606
QVSDLISVLR	0	1	Unmodified	1128.6503	0.65027285	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			21.111	21.111	2	0.0049594	14587	DP1063-8	131.06	70.38			NaN	NaN	NaN	0	0	Median	30445000	0	30445000	2435	148	2303	5642	11691;11692	11692		2	9606
QVVNIPSFIVR	0	1	Unmodified	1270.7398	0.73975656	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					2	21.36	21.36	2	3.368E-07	15402	DP1063-10	159.28	138.99			17.162	12.378	NaN	1	0	Median	146370000	9189400	137180000	2436	217	2304	5643;5644	11693;11694;11695;11696;11697	11695		5	9606
QWGWTQGR	0	1	Unmodified	1017.4781	0.47806257	154	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	18.154	18.154	2	0.0027133	11242	DP1063-10	116.88	116.88			7.0608	5.0926	NaN	1	0	Median	37670000	4884500	32785000	2437	154	2305	5645	11698;11699	11698		2	9606
QWYESHYALPLGR	0	1	Unmodified	1618.7892	0.78922595	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					2	19.351	19.351	2;3	9.857E-23	12852	DP1063-10	206.73	206.73			10.11	7.2916	11.726	2	0	Median	124600000	12924000	111680000	2438	267	2306	5646;5647	11700;11701;11702;11703;11704;11705	11705		6	9606
RAEEIWQQSVIGDYLAR	0	2	Unmodified	2033.033	0.033038048	146	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	2	0		1				21.359	21.359	3	0.032361	14912	DP1063-7	70.334	40.648			NaN	NaN	NaN	0	0	Median	7663500	0	7663500	2439	146	2307	5648	11706	11706		1	9606
RAGELTEDEVER	0	2	Unmodified	1402.6688	0.66883604	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					2	14.529	14.529	2;3	1.5224E-10	6769	DP1063-10	179.94	148.06			3.0702	3.1161	5.3202	2	0	Median	49672000	12283000	37389000	2440	273	2308	5649;5650	11707;11708;11709;11710;11711;11712	11710		6	9606
RALLAANEEEDREIR	0	3	Unmodified	1783.9177	0.91767394	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	2	2.5	0.5		1	1			15.325	15.325	3	0.012628	6906	DP1063-7	97.631	65.201			NaN	NaN	NaN	0	0	Median	93944000	0	93944000	2441	418	2309	5651;5652	11713;11714	11713		2	9606
RAMGEQAVALAR	0	2	Oxidation (M)	1287.6718	0.67175335	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2.5	0.5		2	2			14.059	14.059	2;3	9.6533E-05	5493	DP1063-8	109.72	77.562			1.0398	1.053	5.1087	4	0	Median	153970000	72734000	81233000	2442	94	2310	5653;5654;5655;5656	11715;11716;11717;11718;11719;11720;11721;11722;11723;11724	11720	82	10	9606
RAPDQAAEIGSR	0	2	Unmodified	1269.6426	0.64256171	415	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	1	4	0				1		13.509	13.509	3	0.00099578	4628	DP1063-9	77.078	49.929			1.9614	1.9901	NaN	1	0	Median	4817500	1484800	3332600	2443	415	2311	5657	11725;11726	11726		2	9606
RAYIAYELNSVQHR	0	2	Unmodified	1718.8853	0.8852516	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.644	16.644	2;3	5.7350000000000005E-33	6901	DP1063-6	219.84	164.55			0.95376	0.97031	0.60372	2	0	Median	494960000	244810000	250150000	2444	355	2312	5658;5659	11727;11728;11729;11730;11731;11732;11733;11734	11729		8	9606
RECPSDECGAGVFMASHFDR	0	2	Oxidation (M)	2342.9467	0.94668394	300	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	yes	0	1	1	5	0					1	16.674	16.674	3	0.00052427	9348	DP1063-10	117.6	108.31			NaN	NaN	NaN	0	0	Median	5518300	0	5518300	2445	300	2313	5660	11735;11736;11737	11736	358	3	9606
REELSNVLAAMR	0	2	Oxidation (M)	1403.7191	0.71909747	580	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	1	5	0					1	16.703	16.703	3	0.0011081	9334	DP1063-10	74.392	41.869			3.1741	3.2216	NaN	1	0	Median	14663000	3591400	11072000	2446	580	2314	5661	11738;11739	11738	631	2	9606
RFDDAVVQSDMK	1	1	Oxidation (M)	1425.6558	0.65582851	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			2			15.053	15.053	2;3	0.006507	6859	DP1063-8	81.676	46.874			4.7182	4.7441	20.707	2	0	Median	138190000	17742000	120450000	2447	128	2315	5662;5663	11740;11741;11742	11741	148	3	9606
RFEDFTR	0	2	Unmodified	969.46683	0.46682918	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.647	15.647	2	0.026198	5727	DP1063-6	71.877	71.877			1.0272	1.045	NaN	1	0	Median	13838000	6933000	6905400	2448	38	2316	5664	11743	11743		1	9606
RFQAQSLGTTYIYDIPEMFR	0	2	Oxidation (M)	2451.1893	0.18928069	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					21.568	21.568	3	1.8526E-08	13273	DP1063-6	150.65	135.34			0.94107	0.95741	NaN	1	0	Median	83397000	43051000	40345000	2449	355	2317	5665	11744;11745;11746	11745	421	3	9606
RFQMTFQFSIWDKFR	1	2	Oxidation (M)	2052.004	0.003986526	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	2	2	0		1				20.959	20.959	3	0.00018671	14399	DP1063-7	111.64	78.928			NaN	NaN	NaN	0	0	Median	0	0	0	2450	418	2318	5666	11747	11747	517	1	9606
RGEEGHDPKEPEQLR	1	2	Unmodified	1775.8551	0.85507368	235	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	4	0				1		12.831	12.831	4	0.00065046	3870	DP1063-9	93.716	93.716			3.0599	3.5676	NaN	1	0	Median	7432300	1487100	5945200	2451	235	2319	5667	11748;11749	11749		2	9606
RGPCIIYNEDNGIIK	1	1	Unmodified	1760.888	0.88795372	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		17.806	17.806	2;3	0.00060899	10327	DP1063-9	88.768	70.432			7.5792	7.1677	NaN	1	0	Median	60199000	6892100	53307000	2452	193	2320	5668;5669	11750;11751;11752;11753	11751		4	9606
RHPEYAVSVLLR	0	2	Unmodified	1438.8045	0.80448208	12	CON__P02769			yes	yes	0	0	1	2.64	1.04	3	2	6	3		16.46	16.46	1;2;3	1.033E-06	9620	DP1063-8	174.94	130.11		+	NaN	NaN	NaN	0	0	Median	96474000000	96474000000	0	2453	12	2321	5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683	11754;11755;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804;11805;11806;11807;11808;11809;11810;11811;11812;11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823;11824;11825;11826;11827;11828;11829;11830;11831;11832;11833;11834;11835;11836;11837;11838;11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849;11850;11851;11852;11853;11854;11855;11856;11857;11858;11859;11860;11861;11862;11863;11864;11865;11866;11867;11868;11869;11870;11871;11872;11873;11874;11875;11876;11877;11878;11879;11880;11881;11882;11883;11884;11885;11886;11887;11888;11889;11890;11891;11892;11893;11894;11895;11896;11897;11898;11899;11900;11901;11902;11903;11904;11905;11906;11907;11908;11909;11910;11911;11912;11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931;11932;11933;11934;11935;11936;11937;11938;11939;11940;11941;11942;11943;11944;11945;11946;11947;11948;11949;11950;11951;11952;11953;11954;11955;11956;11957;11958;11959;11960;11961;11962;11963;11964;11965;11966;11967;11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990	11875		237	
RHPYFYAPELLYYANK	1	1	Unmodified	2044.0207	0.020682448	12	CON__P02769			yes	yes	0	0	1	2.65	1.05	16	30	34	20	3	28.501	28.501	2;3;4	3.4746E-31	13402	DP1063-9	231.74	231.74		+	NaN	NaN	NaN	0	0	Median	14568000000	14568000000	0	2454	12	2322	5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694;5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786	11991;11992;11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007;12008;12009;12010;12011;12012;12013;12014;12015;12016;12017;12018;12019;12020;12021;12022;12023;12024;12025;12026;12027;12028;12029;12030;12031;12032;12033;12034;12035;12036;12037;12038;12039;12040;12041;12042;12043;12044;12045;12046;12047;12048;12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059;12060;12061;12062;12063;12064;12065;12066;12067;12068;12069;12070;12071;12072;12073;12074;12075;12076;12077;12078;12079;12080;12081;12082;12083;12084;12085;12086;12087;12088;12089;12090;12091;12092;12093;12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104;12105;12106;12107;12108;12109;12110;12111;12112;12113;12114;12115;12116;12117;12118;12119;12120;12121;12122;12123;12124;12125;12126;12127;12128;12129;12130;12131;12132;12133;12134;12135;12136;12137;12138;12139;12140;12141;12142;12143;12144;12145;12146;12147;12148;12149;12150;12151;12152;12153;12154;12155;12156;12157;12158;12159;12160;12161;12162;12163;12164;12165;12166;12167;12168;12169;12170;12171;12172	12146		182	
RHWGGNVLGPK	1	1	Unmodified	1219.6574	0.65742391	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		14.539	14.539	3	0.00029542	6048	DP1063-9	88.134	65.659			11.408	10.788	NaN	1	0	Median	45657000	3407900	42249000	2455	280	2323	5787	12173	12173		1	9606
RIALTDNALIAR	0	2	Unmodified	1325.7779	0.77793298	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		17.73	17.73	3	0.004977	10239	DP1063-9	99.539	60.959			NaN	NaN	NaN	0	0	Median	16962000	0	16962000	2456	152	2324	5788	12174;12175	12175		2	9606
RIGYPVMIK	1	1	Oxidation (M)	1091.6161	0.61613595	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0			1			16.04	16.04	2	0.033286	8075	DP1063-8	44.447	21.707			0.96565	0.97095	NaN	1	0	Median	28706000	10049000	18657000	2457	483	2325	5789	12176	12176		0	9606
RILNVPQELYEK	1	1	Unmodified	1500.83	0.83002813	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.241	18.241	2	0.00057181	8930	DP1063-6	117.02	68.582			0.86887	0.91759	NaN	1	0	Median	28881000	14769000	14112000	2458	355	2326	5790	12177;12178;12179;12180	12177		4	9606
RIPVQAVWAGWGHASENPK	1	1	Unmodified	2102.081	0.080991294	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1	0	4					18.775	18.775	2;3;4	2.0231E-49	9651	DP1063-6	234.36	234.36			0.81721	0.86303	6.5275	2	0	Median	384470000	222170000	162300000	2459	355;38	2327	5791;5792;5793;5794	12181;12182;12183;12184;12185;12186;12187;12188;12189;12190;12191	12184		11	9606
RISGLIYEETR	0	2	Unmodified	1335.7147	0.71466402	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					2	16.935	16.935	2;3	2.7517E-05	9668	DP1063-10	129	129			3.5266	3.5792	5.7524	2	0	Median	100570000	22889000	77684000	2460	285	2328	5795;5796	12192;12193;12194	12193		3	9606
RLDGNQYLFLPPNR	0	2	Unmodified	1701.8951	0.895088	472	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	0	1	2	0		1				19.296	19.296	3	0.0051793	12150	DP1063-7	82.515	59.713			NaN	NaN	NaN	0	0	Median	0	0	0	2461	472	2329	5797	12195	12195		1	9606
RLEEELR	0	2	Unmodified	943.50869	0.50869399	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			2			14.095	14.095	2	4.5808E-08	5556	DP1063-8	183.26	33.093			NaN	NaN	NaN	0	0	Median	0	0	0	2462	344	2330	5798;5799	12196;12197	12196		2	9606
RLEIEHSVPK	1	1	Unmodified	1206.6721	0.67207093	546	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	1	3	0			1			14.263	14.263	3	0.013544	5803	DP1063-8	54.784	20.914			2.5737	2.5878	NaN	1	0	Median	15799000	5588800	10211000	2463	546	2331	5800	12198	12198		1	9606
RLFEGNALLR	0	2	Unmodified	1187.6775	0.67749065	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	18.038	18.038	2	1.7658E-16	11132	DP1063-10	183.72	126.67			19.573	19.865	NaN	1	0	Median	97117000	6209700	90908000	2464	217	2332	5801	12199;12200	12200		2	9606
RLLLEDLVK	1	1	Unmodified	1097.6808	0.6808447	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	3	1.41	1	1	1	1	1	19.936	19.936	2	0.00037816	11193	DP1063-6	123.21	123.21			1.0171	1.0536	11.242	5	0	Median	342740000	174610000	168130000	2465	355	2333	5802;5803;5804;5805;5806	12201;12202;12203;12204;12205;12206;12207;12208;12209;12210;12211;12212;12213;12214;12215	12206		15	9606
RLLPSLIGR	0	2	Unmodified	1023.6553	0.65529865	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			18.294	18.294	2	0.011889	10928	DP1063-8	120.31	93.51			NaN	NaN	NaN	0	0	Median	43404000	0	43404000	2466	75	2334	5807	12216	12216		1	9606
RLNHYVLYK	1	1	Unmodified	1204.6717	0.671677	51	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	1	3	0			1			14.804	14.804	3	0.005108	6515	DP1063-8	67.494	47.207			0.70566	0.70954	NaN	1	0	Median	12377000	4921200	7456100	2467	51	2335	5808	12217	12217		1	9606
RLNISYTR	0	2	Unmodified	1021.5669	0.56687757	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0.816		1	1	1		15.05	15.05	2	1.4143E-05	6620	DP1063-9	139.97	88.635			1.0605	1.076	0.99554	3	0	Median	787590000	374640000	412950000	2468	483	2336	5809;5810;5811	12218;12219;12220;12221;12222;12223;12224;12225;12226	12225		9	9606
RLPDAHSDYAR	0	2	Unmodified	1299.632	0.63199703	480	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	3	0.816		1	1	1		13.577	13.577	3	2.1274E-06	4889	DP1063-8	145.23	123.47			0.72902	0.74125	14.993	3	0	Median	45132000	25410000	19722000	2469	480	2337	5812;5813;5814	12227;12228;12229;12230;12231;12232;12233;12234;12235;12236;12237;12238	12232		12	9606
RLQIEESSKPVR	1	2	Unmodified	1440.8049	0.80487601	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	2	4	0				1		13.795	13.795	3	0.0082049	5009	DP1063-9	113.52	61.257			NaN	NaN	NaN	0	0	Median	9470900	0	9470900	2470	138	2338	5815	12239	12239		1	9606
RLQSIGTENTEENRR	0	3	Unmodified	1801.9031	0.90308651	87	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	2	4	0				1		13.346	13.346	3	0.045141	4442	DP1063-9	55.885	40.692			0.89019	0.93849	NaN	1	0	Median	8499300	3941900	4557400	2471	87	2339	5816	12240	12240		1	9606
RLQTQVFK	1	1	Unmodified	1018.5924	0.59236404	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	14.624	14.624	2	0.0069928	6810	DP1063-10	86.833	50.132			20.768	20.496	NaN	1	0	Median	161950000	8347200	153600000	2472	217	2340	5817	12241;12242	12241		2	9606
RLTFLVAQK	1	1	Unmodified	1074.655	0.6549643	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.24	17.24	2	0.00066987	7673	DP1063-6	101.25	54.171			0.97304	1.0276	NaN	1	0	Median	434110000	216910000	217210000	2473	355	2341	5818	12243;12244;12245;12246	12245		4	9606
RLVVHCEQLDAQNQQR	0	2	Unmodified	1992.9912	0.99119001	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	1	1	0	1					14.67	14.67	3	7.2682E-06	4490	DP1063-6	144.4	116.31			NaN	NaN	NaN	0	0	Median	2125600	0	2125600	2474	57	2342	5819	12247	12247		1	9606
RNPDTQWITKPVHK	2	1	Unmodified	1718.9216	0.92163711	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	2	5	0					1	14.655	14.655	3	0.01502	6947	DP1063-10	96.707	68.654			NaN	NaN	NaN	0	0	Median	7237900	0	7237900	2475	257	2343	5820	12248	12248		1	9606
RNWNLYPACLREMSR	0	3	Oxidation (M)	1980.9411	0.94106869	502	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	1	2	1	0	1					21.156	21.156	2	0.0052861	12643	DP1063-6	76.943	76.943			3.9855	4.2389	NaN	1	0	Median	89286000	15299000	73987000	2476	502	2344	5821	12249	12249	581	1	9606
RPAEDMEEEQAFKR	1	2	Oxidation (M)	1750.7944	0.79444726	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3	0			1			13.94	13.94	3	0.00214	5521	DP1063-8	76.358	76.358			3.6571	3.9932	NaN	1	0	Median	32511000	5358100	27153000	2477	262	2345	5822	12250;12251;12252;12253	12253	322	4	9606
RPAEDMEEEQAFKR	1	2	Unmodified	1734.7995	0.79953264	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	2	3	0			1			14.828	14.828	3	0.0016609	6563	DP1063-8	125.67	108.79			2.6575	2.9017	NaN	1	0	Median	13261000	3539600	9721200	2478	262	2345	5823	12254;12255	12254		2	9606
RPCFSALTPDETYVPK	1	1	Unmodified	1879.9138	0.91383411	12	CON__P02769			yes	yes	0	0	1	2.46	0.968	14	10	34	1	2	24.005	24.005	2;3	4.2587E-15	10997	DP1063-8	184.87	142.15		+	NaN	NaN	NaN	0	0	Median	11513000000	11513000000	0	2479	12	2346	5824;5825;5826;5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865;5866;5867;5868;5869;5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884	12256;12257;12258;12259;12260;12261;12262;12263;12264;12265;12266;12267;12268;12269;12270;12271;12272;12273;12274;12275;12276;12277;12278;12279;12280;12281;12282;12283;12284;12285;12286;12287;12288;12289;12290;12291;12292;12293;12294;12295;12296;12297;12298;12299;12300;12301;12302;12303;12304;12305;12306;12307;12308;12309;12310;12311;12312;12313;12314;12315;12316;12317;12318;12319;12320;12321;12322;12323;12324;12325;12326;12327;12328;12329;12330;12331;12332;12333;12334;12335;12336;12337;12338;12339;12340	12293		85	
RPDQQLQGEGK	1	1	Unmodified	1254.6317	0.63166267	455	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	3	0			7			12.742	12.742	2;3	5.2476E-05	3887	DP1063-8	86.463	65.455			4.5836	4.6087	NaN	1	0	Median	31890000	9949700	21940000	2480	455	2347	5885;5886;5887;5888;5889;5890;5891	12341;12342;12343;12344;12345;12346;12347;12348	12341		8	9606
RPEAAKEEAAWASSSAGNPADGLATEPESVFALDVLR	1	2	Unmodified	3811.8653	0.8653106	72	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	2	4	0				1		22.133	22.133	4	5.3708E-11	16136	DP1063-9	93.437	65.47			NaN	NaN	NaN	0	0	Median	7888400	0	7888400	2481	72	2348	5892	12349	12349		1	9606
RPELLTHSTTEVTQPR	0	2	Unmodified	1863.9803	0.9802742	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		2				15.271	15.271	2;3	4.8942E-05	6634	DP1063-7	146.1	146.1			0.86377	0.8712	NaN	1	0	Median	52768000	26398000	26370000	2482	316	2349	5893;5894	12350;12351;12352;12353;12354	12352		5	9606
RPFLEPK	1	1	Unmodified	885.50724	0.50723743	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				14.675	14.675	2	0.010667	5852	DP1063-7	88.029	37.063			0.9242	0.96773	NaN	1	0	Median	26544000	13051000	13493000	2483	316	2350	5895	12355;12356	12355		2	9606
RPGAALDPGCVLAK	1	1	Unmodified	1423.7606	0.76056836	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	2	2				16.887	16.887	2;3	0.00095155	7113	DP1063-6	65.895	28.282			0.77654	0.82008	7.1465	4	0	Median	935340000	513120000	422230000	2484	355	2351	5896;5897;5898;5899	12357;12358;12359;12360;12361;12362;12363;12364;12365;12366;12367;12368;12369;12370;12371	12362		15	9606
RPGAVLEAGCVVAR	0	2	Unmodified	1453.7824	0.78236643	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.26	16.26	3	0.049794	6506	DP1063-6	27.938	11.997			0.93927	0.95557	NaN	1	0	Median	18795000	9004900	9790300	2485	38	2352	5900	12372	12372		0	9606
RPIVGLGGGK	1	1	Unmodified	952.5818	0.58179936	370	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	1	4	0				1		14.405	14.405	2	0.0081817	5909	DP1063-9	77.318	39.157			0.67067	0.63426	NaN	1	0	Median	38497000	22125000	16372000	2486	370	2353	5901	12373	12373		1	9606
RPLEMEQQQAYRPEMK	1	2	2 Oxidation (M)	2064.9721	0.97209405	500	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	2	2	2	0		1				13.884	13.884	3	0.050127	4742	DP1063-7	58.461	31.336			NaN	NaN	NaN	0	0	Median	4373500	0	4373500	2487	500	2354	5902	12374	12374		1	9606
RPQYRPQYR	0	3	Unmodified	1262.6632	0.66323757	144	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	2	3	0			1			12.903	12.903	3	0.00033174	4021	DP1063-8	127.46	70.546			6.6551	6.7061	NaN	1	0	Median	19932000	2978500	16953000	2488	144	2355	5903	12375;12376;12377;12378;12379	12375		5	9606
RPQYSNPPVQGEVMEGADNQGAGEQGR	0	2	Oxidation (M)	2886.2951	0.29509576	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	1	4	0				1		15.511	15.511	3	2.665E-11	7221	DP1063-9	127.11	113.38			NaN	NaN	NaN	0	0	Median	31661000	0	31661000	2489	306	2356	5904	12380;12381;12382	12381	360	3	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Unmodified	3222.5225	0.52246994	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	2	4	0				2		16.099	16.099	3;4	1.3745E-18	8094	DP1063-9	148.53	138.2			3.5506	3.7432	NaN	1	0	Median	72493000	10989000	61504000	2490	306	2357	5905;5906	12383;12384;12385;12386;12387;12388;12389;12390;12391	12384		9	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Oxidation (M)	3238.5174	0.51738456	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	4	0				1		15.351	15.351	4	1.3452E-16	7027	DP1063-9	152.28	130.61			NaN	NaN	NaN	0	0	Median	36249000	36249000	0	2491	306	2357	5907	12392;12393;12394;12395	12395	360	4	9606
RPSTYGIPR	0	2	Unmodified	1045.5669	0.56687757	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				14.539	14.539	2	0.0038724	5745	DP1063-7	89.08	89.08			1.5157	1.5288	NaN	1	0	Median	35767000	14998000	20770000	2492	316	2358	5908	12396;12397	12397		2	9606
RQNEDIEPTSSR	0	2	Unmodified	1430.675	0.67498405	539	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	1	2	0		1				13.009	13.009	2	0.00098989	3725	DP1063-7	140.78	71.129			NaN	NaN	NaN	0	0	Median	2994700	0	2994700	2493	539	2359	5909	12398	12398		1	9606
RREEEGLQLR	0	3	Unmodified	1284.6898	0.68984626	238	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	2	3	0			1			13.806	13.806	3	0.037527	5397	DP1063-8	49.466	0			8.8686	8.9366	NaN	1	0	Median	21986000	1880000	20106000	2494	238	2360	5910	12399	12399		0	9606
RSELSQDAEPAGSQETK	1	1	Unmodified	1831.8548	0.85479891	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	1	2	0		1				13.678	13.678	3	0.026886	4552	DP1063-7	73.168	47.851			NaN	NaN	NaN	0	0	Median	3561600	0	3561600	2495	504	2361	5911	12400;12401	12400		2	9606
RTAQEVETYR	0	2	Unmodified	1251.6208	0.62076364	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			1			13.514	13.514	2	1.3426E-07	4822	DP1063-8	147.3	119.29			13.618	13.846	NaN	1	0	Median	17271000	1007700	16263000	2496	148	2362	5912	12402	12402		1	9606
RTAQEVETYRR	0	3	Unmodified	1407.7219	0.72187466	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	2	3	0			1			12.802	12.802	3	5.173E-07	4009	DP1063-8	155.47	155.47			12.759	12.856	NaN	1	0	Median	68534000	4686100	63848000	2497	148	2363	5913	12403;12404	12403		2	9606
RTELFIAAEGIHTGQFVYCGK	1	1	Unmodified	2396.1947	0.19470042	298	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		19.639	19.639	4	0.00078934	12874	DP1063-9	97.08	74.341			NaN	NaN	NaN	0	0	Median	13616000	0	13616000	2498	298	2364	5914	12405;12406	12405		2	9606
RTEMEYYTHEKQEK	2	1	Oxidation (M)	1886.8469	0.84687676	425	Q5T3J3	LRIF1	Ligand-dependent nuclear receptor-interacting factor 1	yes	yes	0	1	2	4	0				1		24.519	24.519	2	0.004758	18982	DP1063-9	118.23	94.484			NaN	NaN	NaN	0	0	Median	124520000	124520000	0	2499	425	2365	5915	12407;12408	12408	524	2	9606
RTHLASDDLYK	1	1	Unmodified	1317.6677	0.66771383	521	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	1	4	0				1		14.159	14.159	3	0.02844	5503	DP1063-9	71.806	51.376			NaN	NaN	NaN	0	0	Median	4617400	0	4617400	2500	521	2366	5916	12409	12409		1	9606
RVDPVYIHLAER	0	2	Unmodified	1466.7994	0.7993967	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.65	1.15	14	2	2	1	1	21.794	21.794	2;3	1.2137E-06	7208	DP1063-6	158.06	158.06			0.78383	0.79698	23.905	13	0	Median	1801799999.9999998	942250000	859590000	2501	355	2367	5917;5918;5919;5920;5921;5922;5923;5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934;5935;5936	12410;12411;12412;12413;12414;12415;12416;12417;12418;12419;12420;12421;12422;12423;12424;12425;12426;12427;12428;12429;12430;12431;12432;12433;12434;12435;12436;12437;12438;12439;12440;12441;12442;12443;12444;12445;12446;12447;12448;12449;12450;12451	12422		42	9606
RVENSIPAAGETQNVEVAAGPAGK	1	1	Unmodified	2364.2034	0.20335085	389	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	2	0		1				16.611	16.611	3	0.0054356	8497	DP1063-7	76.959	39.58			NaN	NaN	NaN	0	0	Median	13959000	0	13959000	2502	389	2368	5937	12452	12452		1	9606
RVFLIDLNSTHGTFLGHIR	0	2	Unmodified	2195.1964	0.1963554	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		19.872	19.872	4	0.00095382	13198	DP1063-9	102.84	74.892			NaN	NaN	NaN	0	0	Median	6641000	0	6641000	2503	352	2369	5938	12453;12454	12453		2	9606
RVNQAIWLLCTGAR	0	2	Unmodified	1656.8882	0.88822849	218	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	1	5	0					1	19.654	19.654	3	0.002104	13247	DP1063-10	106.32	73.315			NaN	NaN	NaN	0	0	Median	6950100	0	6950100	2504	218	2370	5939	12455;12456	12456		2	9606
RVSALNSVHCEHVEDEGESR	0	2	Unmodified	2309.0455	0.045470003	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					14.338	14.338	3;4	5.3554E-11	4078	DP1063-6	159.75	141.85			0.89383	0.90934	5.1783	2	0	Median	98591000	52076000	46515000	2505	355	2371	5940;5941	12457;12458;12459;12460;12461;12462;12463;12464	12461		8	9606
RWSYEMFR	0	2	Oxidation (M)	1189.5339	0.53386288	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					17.431	17.431	2	0.038197	7827	DP1063-6	46.994	34.406			0.81592	0.83008	NaN	1	0	Median	36025000	16811000	19214000	2506	355	2372	5942	12465	12465	448	0	9606
RYDDPEVQK	1	1	Unmodified	1148.5462	0.54620171	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	2.5	0.5		1	1			13.237	13.237	2	0.0007293	4463	DP1063-8	98.582	42.035			1.6628	1.7062	24.993	2	0	Median	21650000	8137200	13512000	2507	198	2373	5943;5944	12466;12467;12468	12468		3	9606
SAALPIFSSFVSNWDEATKR	1	1	Unmodified	2225.1117	0.1116823	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			24.013	24.013	3	3.8546E-44	18277	DP1063-8	224.15	189.42			NaN	NaN	NaN	0	0	Median	16140000	0	16140000	2508	75	2374	5945	12469;12470;12471;12472;12473;12474	12473		6	9606
SAAQAAAQTNSNAAGK	1	0	Unmodified	1459.7015	0.70153315	455	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	3	0			1			12.631	12.631	2	1.0672999999999999E-44	3725	DP1063-8	228.61	189.86			3.2563	3.2797	NaN	1	0	Median	21845000	6463100	15382000	2509	455	2375	5946	12475;12476;12477	12475		3	9606
SADEANVLR	0	1	Unmodified	973.48287	0.48287317	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3.5	1.12		1	1	1	1	15.413	15.413	2	0.0027513	6852	DP1063-8	147.52	87.041			NaN	NaN	NaN	0	0	Median	316020000	0	316020000	2510	418	2376	5947;5948;5949;5950	12478;12479;12480;12481;12482;12483;12484	12481		7	9606
SADGSAPAGEGEGVTLQR	0	1	Unmodified	1700.7966	0.79655575	332	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	2	1.41	2			1		16.007	16.007	2	0.00044992	7995	DP1063-9	101.43	71.664			1.3862	1.45	NaN	1	0	Median	14316000	3973800	10343000	2511	332	2377	5951;5952;5953	12485;12486;12487	12487		3	9606
SAEEEAADLPTKPTK	2	0	Unmodified	1585.7835	0.78353145	461	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					2	14.999	14.999	2;3	1.3525E-23	7343	DP1063-10	219.92	162.57			NaN	NaN	NaN	0	0	Median	15724000	0	15724000	2512	461	2378	5954;5955	12488;12489;12490;12491	12490		4	9606
SAEFLLHMLK	1	0	Oxidation (M)	1203.6322	0.63217995	154	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	0	5	0					1	18.243	18.243	2	0.0082173	11367	DP1063-10	129.42	92.975			NaN	NaN	NaN	0	0	Median	18991000	0	18991000	2513	154	2379	5956	12492;12493	12493	182	2	9606
SAEFLLHMLK	1	0	Unmodified	1187.6373	0.63726532	154	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	20.535	20.535	2	0.0059157	14412	DP1063-10	128.38	63.73			NaN	NaN	NaN	0	0	Median	7519900	0	7519900	2514	154	2379	5957	12494;12495	12494		2	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1283.6445	0.64447597	216	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	1	0	5	0					1	19.094	19.094	2	6.8792E-05	12465	DP1063-10	114.86	114.86			9.1694	6.6135	NaN	1	0	Median	259460000	28767000	230700000	2515	216	2380	5958	12496;12497;12498;12499	12497	256	4	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term)	1267.6496	0.64956134	216	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	5	0					1	20.59	20.59	2	3.3699E-06	14402	DP1063-10	150.27	150.27			10.29	7.4217	NaN	1	0	Median	62103000	4742300	57360000	2516	216	2380	5959	12500;12501	12500		2	9606
SAHTLGPTPSR	0	1	Unmodified	1122.5782	0.57817054	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	0	1					13.091	13.091	2	0.0068304	2609	DP1063-6	123.86	82.412			NaN	NaN	NaN	0	0	Median	1605300	0	1605300	2517	365	2381	5960	12502;12503	12502		2	9606
SASPDDDLGSSNWEAADLGNEER	0	1	Unmodified	2434.0157	0.015669242	31	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	4.5	0.5				1	1	19.765	19.765	2	5.2419999999999995E-52	13019	DP1063-9	217.79	192.55			NaN	NaN	NaN	0	0	Median	43492000	0	43492000	2518	31	2382	5961;5962	12504;12505;12506;12507;12508;12509	12508		6	9606
SCSGVEFSTSGSSNTDTGK	1	0	Unmodified	1906.7851	0.78506437	210	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		15.678	15.678	2	7.1266E-41	7498	DP1063-9	237.21	181.81			NaN	NaN	NaN	0	0	Median	10201000	0	10201000	2519	210	2383	5963	12510;12511	12511		2	9606
SDAAVDTSSEITTK	1	0	Acetyl (Protein N-term)	1465.6784	0.67839767	101	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	1	0	0	5	0					1	17.613	17.613	2	0.0071826	10545	DP1063-10	84.821	48.439			NaN	NaN	NaN	0	0	Median	0	0	0	2520	101	2384	5964	12512	12512		1	9606
SDAGLESDTAMK	1	0	Oxidation (M)	1239.5289	0.52889667	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	1	0	2	0		1				13.917	13.917	2	0.00064678	4825	DP1063-7	143.89	120.46			NaN	NaN	NaN	0	0	Median	28999000	0	28999000	2521	531	2385	5965	12513;12514	12514	602	2	9606
SDGPYALVLVPTR	0	1	Unmodified	1386.7507	0.75071518	522	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	2	0		1				20.967	20.967	2	0.048527	14410	DP1063-7	78.653	44.566			NaN	NaN	NaN	0	0	Median	0	0	0	2522	522	2386	5966	12515	12515		1	9606
SDIASHFSNKR	1	1	Unmodified	1260.6211	0.62109799	515	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	1	2	0		1				13.74	13.74	3	0.0076261	4661	DP1063-7	94.363	51.56			NaN	NaN	NaN	0	0	Median	6755300	0	6755300	2523	515	2387	5967	12516	12516		1	9606
SDKTEEIAEEEETVFPK	2	0	Unmodified	1979.9211	0.92114714	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				18.909	18.909	2	7.69E-09	11485	DP1063-7	163.62	132.89			NaN	NaN	NaN	0	0	Median	22307000	0	22307000	2524	531	2388	5968	12517;12518	12518		2	9606
SDLEMQYETLQEELMALK	1	0	2 Oxidation (M)	2202.0072	0.0072017319	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	0	3	0			1			24.156	24.156	2	0.0069376	18468	DP1063-8	107.46	76.982		+	NaN	NaN	NaN	0	0	Median	9854200	9854200	0	2525	19	2389	5969	12519	12519	14;15	1	9606
SDLYVSDAFHK	1	0	Unmodified	1280.6037	0.60371659	21	CON__P41361			yes	yes	0	0	0	4	0				1		17.38	17.38	2	0.035759	9784	DP1063-9	82.287	46.992		+	NaN	NaN	NaN	0	0	Median	10551000	10551000	0	2526	21	2390	5970	12520	12520		1	9606
SDMNTVLNYIFSHAQVTK	1	0	Oxidation (M)	2083.0044	0.004440036	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	2	2				22.363	22.363	2;3	3.4305E-76	14244	DP1063-6	269.87	216.98			1.0114	1.0318	3.8622	3	0	Median	295860000	141650000	154210000	2527	355	2391	5971;5972;5973;5974	12521;12522;12523;12524;12525;12526;12527;12528	12522	417	8	9606
SDMNTVLNYIFSHAQVTKK	2	0	Oxidation (M)	2211.0994	0.099403054	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					21.08	21.08	4	0.050065	12679	DP1063-6	46.162	25.597			NaN	NaN	NaN	0	0	Median	10422000	10422000	0	2528	355	2392	5975	12529	12529	417	1	9606
SDQNLQTALELTR	0	1	Unmodified	1487.758	0.7579854	79	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				19.632	19.632	2	0.007137	12618	DP1063-7	125.97	74.534			NaN	NaN	NaN	0	0	Median	0	0	0	2529	79	2393	5976	12530	12530		1	9606
SDSEDICLFTKDEPNSTPEK	2	0	Unmodified	2311.0162	0.016186514	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			18.138	18.138	3	0.021974	10759	DP1063-8	72.421	35.379			NaN	NaN	NaN	0	0	Median	26220000	0	26220000	2530	75	2394	5977	12531	12531		1	9606
SEEGPGWTILR	0	1	Unmodified	1243.6197	0.619701	577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	4	0				1		19.934	19.934	2	0.016086	13252	DP1063-9	99.653	60.631			NaN	NaN	NaN	0	0	Median	10622000	0	10622000	2531	577	2395	5978	12532;12533	12532		2	9606
SEETNTEIVECILK	1	0	Unmodified	1663.7975	0.79746695	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					21.082	21.082	2	3.5827E-18	12653	DP1063-6	218.11	161.54			NaN	NaN	NaN	0	0	Median	22545000	0	22545000	2532	211	2396	5979	12534;12535	12535		2	9606
SEETNTEIVECILKR	1	1	Unmodified	1819.8986	0.89857798	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				20.055	20.055	3	2.1708E-09	13181	DP1063-7	167.73	142.79			NaN	NaN	NaN	0	0	Median	32304000	0	32304000	2533	211	2397	5980;5981	12536;12537;12538;12539;12540	12538		5	9606
SEITELRR	0	2	Unmodified	1002.5458	0.54580778	16	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2	1	1		1			14.497	14.497	2	0.042851	6059	DP1063-8	98.997	44.792		+	NaN	NaN	NaN	0	0	Median	75918000	75918000	0	2534	16	2398	5982;5983	12541;12542	12542		2	9606
SELDVPVEILNITEK	1	0	Unmodified	1697.9087	0.90873196	2	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1	0	1					23.203	23.203	2	0.0054927	15287	DP1063-6	100.38	56.188			NaN	NaN	NaN	0	0	Median	0	0	0	2535	2	2399	5984	12543	12543		1	9606
SELSQDAEPAGSQETK	1	0	Unmodified	1675.7537	0.75368788	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				14.662	14.662	2	1.4333E-62	5811	DP1063-7	276.35	208.42			NaN	NaN	NaN	0	0	Median	11790000	0	11790000	2536	504	2400	5985	12544;12545	12544		2	9606
SENSSEDGDITDK	1	0	Unmodified	1395.5638	0.56376185	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				13.63	13.63	2	0.0099523	4495	DP1063-7	116.55	62.771			NaN	NaN	NaN	0	0	Median	0	0	0	2537	418	2401	5986	12546	12546		1	9606
SEQEFQEQLESAR	0	1	Unmodified	1579.7114	0.71142914	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	1.12		1	1	1	1	17.925	17.925	2	6.9703E-100	10466	DP1063-9	296.65	258.36			1.0999	1.1131	21.151	3	0	Median	316620000	138110000	178510000	2538	483	2402	5987;5988;5989;5990	12547;12548;12549;12550;12551;12552;12553;12554;12555;12556	12553		10	9606
SEQEFQEQLESARR	0	2	Unmodified	1735.8125	0.81254017	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.67	0.943		2		1		16.846	16.846	2;3	1.108E-69	8765	DP1063-7	251.81	251.81			1.2758	1.136	8.8801	3	0	Plateau	252950000	116970000	135970000	2539	483	2403	5991;5992;5993	12557;12558;12559;12560;12561;12562;12563;12564;12565;12566;12567;12568;12569	12558		13	9606
SEREVFFMNTQSIVQLVQR	0	2	Oxidation (M)	2326.174	0.17396498	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					21.513	21.513	3	5.1509E-13	13212	DP1063-6	173.49	173.49			1.0591	1.0774	NaN	1	0	Median	23175000	9829500	13346000	2540	355	2404	5994	12570;12571;12572	12571	420	3	9606
SESPKEPEQLR	1	1	Unmodified	1298.6466	0.64664404	118	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				1		13.69	13.69	3	3.3304E-05	4876	DP1063-9	122.69	122.69			7.4248	7.0217	NaN	1	0	Median	51923000	5902500	46021000	2541	118	2405	5995	12573;12574;12575;12576	12576		4	9606
SESPKEPEQLRK	2	1	Unmodified	1426.7416	0.74160705	118	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	2	4	0				1		12.797	12.797	3	0.052496	3826	DP1063-9	81.525	27.967			NaN	NaN	NaN	0	0	Median	3216800	3216800	0	2542	118	2406	5996	12577	12577		1	9606
SETAPAAPAAAPPAEK	1	0	Acetyl (Protein N-term)	1519.7518	0.75183739	142	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	4	0				1		16.482	16.482	2	0.031557	8393	DP1063-9	107.97	15.72			5.7791	5.94	NaN	1	0	Median	308990000	56994000	251990000	2543	142	2407	5997	12578	12578		1	9606
SETAPAAPAAAPPAEK	1	0	Unmodified	1477.7413	0.7412727	142	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	4	0				1		14.876	14.876	2	0.0031116	6421	DP1063-9	112.84	3.6863			NaN	NaN	NaN	0	0	Median	8611300	0	8611300	2544	142	2407	5998	12579;12580	12580		2	9606
SETAPAAPAAAPPAEKAPVK	2	0	Acetyl (Protein N-term)	1915.0051	0.005091963	142	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	1	4	0				1		15.994	15.994	2	6.7004E-15	7898	DP1063-9	169.3	169.3			5.0645	5.3575	NaN	1	0	Median	73481000	10992000	62488000	2545	142	2408	5999	12581;12582;12583;12584;12585	12581		5	9606
SETAPAAPAAAPPAEKAPVKK	3	0	Acetyl (Protein N-term)	2043.1001	0.10005498	142	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	2	4	0				1		14.875	14.875	3	5.1199E-07	6395	DP1063-9	116.85	116.85			4.5447	4.8279	NaN	1	0	Median	36115000	4822900	31292000	2546	142	2409	6000	12586;12587;12588;12589	12588		4	9606
SETAPAAPAAPAPAEKTPVK	2	0	Acetyl (Protein N-term)	1945.0157	0.015656649	125	P10412	HIST1H1E	Histone H1.4	yes	yes	1	0	1	4	0				2		16.055	16.055	2	1.2562E-11	8008	DP1063-9	162.88	112.39			NaN	NaN	NaN	0	0	Median	13608000	0	13608000	2547	125	2410	6001;6002	12590;12591;12592	12590		3	9606
SEVPEDLAGFIELFQTPSHTK	1	0	Unmodified	2344.1587	0.15869207	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				24.295	24.295	2	0.025064	18927	DP1063-7	79.804	45.703			NaN	NaN	NaN	0	0	Median	16695000	0	16695000	2548	211	2411	6003	12593	12593		1	9606
SEVVESTTESQDKENSHQK	2	0	Unmodified	2160.9771	0.97709889	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	1	1	0	1					12.635	12.635	3	0.00051009	2103	DP1063-6	114.28	87.916			NaN	NaN	NaN	0	0	Median	2053000	0	2053000	2549	426	2412	6004	12594	12594		1	9606
SFGLPSIGR	0	1	Unmodified	932.50797	0.50796571	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		19.718	19.718	2	6.2792E-07	12703	DP1063-8	151.04	61.283			0.93419	0.94188	14.979	3	0	Median	236180000	119650000	116540000	2550	94	2413	6005;6006;6007	12595;12596;12597;12598;12599;12600	12597		6	9606
SFLLDLLNATGK	1	0	Unmodified	1290.7184	0.71835242	36	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			24.615	24.615	2	0.013511	19007	DP1063-8	99.568	73.126			NaN	NaN	NaN	0	0	Median	3923700	0	3923700	2551	36	2414	6008	12601;12602	12601		2	9606
SFNDDAMLIEK	1	0	Oxidation (M)	1297.586	0.58601761	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		1				18.036	18.036	2	0.00016762	10408	DP1063-7	99.788	71.706			1.0657	1.0982	NaN	1	0	Median	168600000	81700000	86896000	2552	483	2415	6009	12603;12604;12605;12606	12605	555	4	9606
SFNDDAMLIEK	1	0	Unmodified	1281.5911	0.59110299	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				19.179	19.179	2	0.022886	11989	DP1063-7	99.815	66.018			NaN	NaN	NaN	0	0	Median	0	0	0	2553	483	2415	6010	12607	12607		1	9606
SFPKDDPSKPVHLTAFLGYK	3	0	Unmodified	2246.1736	0.17355427	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	2	4	0				1		18.522	18.522	4	0.036766	11373	DP1063-9	63.894	50.163			NaN	NaN	NaN	0	0	Median	12650000	0	12650000	2554	201	2416	6011	12608	12608		1	9606
SFQPDTGR	0	1	Unmodified	906.41954	0.41954463	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		14.141	14.141	2	0.0014036	5061	DP1063-7	127.12	102.22			0.89254	0.87893	10.926	3	0	Median	689600000	363680000	325920000	2555	130	2417	6012;6013;6014	12609;12610;12611;12612;12613;12614;12615;12616	12614		8	9606
SFQPDTGRIEVFR	0	2	Unmodified	1550.7841	0.78414057	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				18.375	18.375	2;3	0.00059185	10970	DP1063-7	95.094	59.32			0.8575	0.86488	2.696	2	0	Median	174250000	85500000	88751000	2556	130	2418	6015;6016	12617;12618;12619;12620;12621;12622	12620		6	9606
SFQQSSLSR	0	1	Unmodified	1038.5094	0.50942227	209	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				14.837	14.837	2	0.052429	6077	DP1063-7	80.219	44.6			NaN	NaN	NaN	0	0	Median	10358000	0	10358000	2557	209	2419	6017	12623	12623		1	9606
SFVAYEELIK	1	0	Acetyl (Protein N-term)	1239.6387	0.63870511	475	Q96FX7	TRMT61A	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	yes	yes	1	0	0	4	0				1		24.695	24.695	2	0.040718	19222	DP1063-9	68.735	19.317			NaN	NaN	NaN	0	0	Median	1384600	0	1384600	2558	475	2420	6018	12624	12624		1	9606
SGAAHLCDSQETNCSTAGHSK	1	0	Unmodified	2216.9175	0.9174923	549	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	2	0		2				12.748	12.748	3;4	3.9214E-06	3355	DP1063-7	138.28	129.34			NaN	NaN	NaN	0	0	Median	9563900	0	9563900	2559	549	2421	6019;6020	12625;12626;12627	12626		3	9606
SGAGEALAPGPVGPQR	0	1	Unmodified	1462.7528	0.75284044	548	Q9P1T7	MDFIC	MyoD family inhibitor domain-containing protein	yes	yes	0	0	0	1	0	1					17.759	17.759	2	0.0054677	8313	DP1063-6	67.93	39.133			0.76264	0.7836	NaN	1	0	Median	50098000	28991000	21107000	2560	548	2422	6021	12628	12628		1	9606
SGALDVLQMKEEDVLK	2	0	Acetyl (Protein N-term);Oxidation (M)	1831.9237	0.9237301	116	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	1	1	1	4	0				1		21.863	21.863	2	0.0016343	15771	DP1063-9	101.72	75.178			NaN	NaN	NaN	0	0	Median	12559000	0	12559000	2561	116	2423	6022	12629	12629	130	1	9606
SGASEANLIVAK	1	0	Unmodified	1158.6245	0.62445203	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.453	16.453	2	0.00029415	8619	DP1063-8	147.73	97.699			NaN	NaN	NaN	0	0	Median	238240000	0	238240000	2562	211	2424	6023;6024;6025;6026	12630;12631;12632;12633;12634;12635;12636;12637;12638	12634		9	9606
SGGASHSELIHNLR	0	1	Unmodified	1476.7433	0.74333839	159	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	5	0					1	14.425	14.425	3	0.0007664	6626	DP1063-10	123.28	91.678			0.79165	0.57098	NaN	1	0	Median	28872000	15852000	13020000	2563	159	2425	6027	12639;12640	12639		2	9606
SGGASHSELIHNLRK	1	1	Unmodified	1604.8383	0.83830141	159	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	5	0					1	13.521	13.521	4	0.014604	5561	DP1063-10	46.3	46.3			0.97903	0.96619	NaN	1	0	Median	9674900	4099300	5575700	2564	159	2426	6028	12641;12642;12643;12644	12644		4	9606
SGGGGGGGLGSGGSIR	0	1	Unmodified	1231.5905	0.59052614	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3.25	1.48	1		1	1	1	14.37	14.37	2	1.5167E-20	4148	DP1063-6	210.44	162.87		+	NaN	NaN	NaN	0	0	Median	123970000	123970000	0	2565	19	2427	6029;6030;6031;6032	12645;12646;12647;12648;12649;12650;12651	12648		7	9606
SGNELPLAVASTADLIR	0	1	Unmodified	1725.9261	0.92611336	583	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	2	0		1				22.21	22.21	2	0.00099602	16019	DP1063-7	126.1	83.295			NaN	NaN	NaN	0	0	Median	7465400	0	7465400	2566	583	2428	6033	12652;12653	12653		2	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	0	Oxidation (M)	3352.5055	0.50548247	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		2				18.691	18.691	3;4	1.4394E-18	11347	DP1063-7	129.22	129.22			0.92179	0.94984	5.2996	2	0	Median	637600000	327470000	310130000	2567	130	2429	6034;6035	12654;12655;12656;12657;12658;12659;12660;12661;12662;12663	12656	164	10	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	0	Unmodified	3336.5106	0.51056785	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				19.397	19.397	3	1.1691E-10	12350	DP1063-7	106.44	66.558			NaN	NaN	NaN	0	0	Median	28962000	0	28962000	2568	130	2429	6036	12664;12665	12665		2	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	1	1	Unmodified	2797.3361	0.33609636	311;109;373	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	1	3.5	0.5			2	2		22.649	22.649	2;3	6.5845E-16	16414	DP1063-8	156.79	130.37			3.1338	3.0559	4.1747	2	0	Median	308690000	64870000	243820000	2569	109;311;373	2430	6037;6038;6039;6040	12666;12667;12668;12669;12670;12671;12672;12673;12674;12675;12676	12666		11	9606
SGPNTQNEDIEK	1	0	Unmodified	1330.6001	0.60008777	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	0		1				13.514	13.514	2	0.0091342	4348	DP1063-7	105.98	62.678			NaN	NaN	NaN	0	0	Median	5125200	0	5125200	2570	383	2431	6041	12677;12678	12678		2	9606
SGPPGEEAQVASQFIADVIENSQIIQK	1	0	Unmodified	2854.4349	0.43486693	470	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				1		26.609	26.609	3	0.026798	21319	DP1063-9	53.022	28.001			NaN	NaN	NaN	0	0	Median	1555700	0	1555700	2571	470	2432	6042	12679	12679		1	9606
SGQGAFGNMCR	0	1	Oxidation (M)	1199.4812	0.48117539	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	4	0				1		13.818	13.818	2	0.0082251	4995	DP1063-9	128.6	118.34			NaN	NaN	NaN	0	0	Median	45692000	0	45692000	2572	193	2433	6043	12680	12680	215	1	9606
SGQGAFGNMCR	0	1	Unmodified	1183.4863	0.48626077	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		15.845	15.845	2	0.037317	7769	DP1063-9	81.525	58.096			NaN	NaN	NaN	0	0	Median	13739000	0	13739000	2573	193	2433	6044	12681	12681		1	9606
SGVDGPHFPLSLSTCLFGR	0	1	Unmodified	2045.9993	0.99929508	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.4	1.02	1	2	1	1		22.415	22.415	2;3	0.00033767	16401	DP1063-9	121.01	93.865			NaN	NaN	NaN	0	0	Median	56946000	0	56946000	2574	211	2434	6045;6046;6047;6048;6049	12682;12683;12684;12685;12686;12687;12688;12689;12690	12690		9	9606
SGVSDHWALDDHHALHLTR	0	1	Unmodified	2166.0355	0.035497664	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		16.902	16.902	2;3;4	1.3138E-60	9268	DP1063-8	265.12	201.65			1.0128	1.0594	13.662	3	0	Median	728620000	346190000	382430000	2575	524	2435	6050;6051;6052;6053	12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701	12698		11	9606
SGVSLAALK	1	0	Unmodified	844.50182	0.5018177	142;125	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	0	4	0				1		17.485	17.485	2	0.024675	9855	DP1063-9	69.825	37.215			8.7657	9.0097	NaN	1	0	Median	285670000	30229000	255440000	2576	125;142	2436	6054	12702	12702		1	9606
SGVSLAALKK	2	0	Unmodified	972.59678	0.59678072	142;125	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	1	4	0				1		15.565	15.565	2	0.00028723	7306	DP1063-9	109.48	71.667			9.8632	10.434	NaN	1	0	Median	246390000	22281000	224110000	2577	125;142	2437	6055	12703;12704;12705;12706	12704		4	9606
SHCIAEVEK	1	0	Unmodified	1071.5019	0.50189405	12	CON__P02769			yes	yes	0	0	0	2.5	0.5		1	1			13.201	13.201	2	0.0023358	3928	DP1063-7	138.06	100.25		+	NaN	NaN	NaN	0	0	Median	60298000	60298000	0	2578	12	2438	6056;6057	12707;12708;12709;12710	12707		4	
SHCIAEVEKDAIPENLPPLTADFAEDK	2	0	Unmodified	3008.4437	0.44371706	12	CON__P02769			yes	yes	0	0	1	3	0			1			20.596	20.596	3	1.2735E-06	13996	DP1063-8	98.267	80.019		+	NaN	NaN	NaN	0	0	Median	25566000	25566000	0	2579	12	2439	6058	12711	12711		1	
SHCIAEVEKDAIPENLPPLTADFAEDKDVCK	3	0	Unmodified	3510.6647	0.66468523	12	CON__P02769			yes	yes	0	0	2	2.36	1.07	3	3	3	2		20.022	20.022	3;4;5	5.0570999999999995E-43	13149	DP1063-7	192.35	177.74		+	NaN	NaN	NaN	0	0	Median	2273500000	2273500000	0	2580	12	2440	6059;6060;6061;6062;6063;6064;6065;6066;6067;6068;6069	12712;12713;12714;12715;12716;12717;12718;12719;12720;12721;12722;12723;12724;12725;12726;12727;12728;12729;12730;12731;12732;12733;12734;12735;12736;12737;12738;12739;12740;12741;12742;12743;12744;12745;12746;12747	12733		36	
SHFEQWGTLTDCVVMR	0	1	Oxidation (M)	1980.8822	0.88221641	118	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				2		19.351	19.351	2;3	1.3479E-08	12459	DP1063-9	161.25	125.26			NaN	NaN	NaN	0	0	Median	31983000	0	31983000	2581	118	2441	6070;6071	12748;12749;12750;12751	12748	133	4	9606
SHFEQWGTLTDCVVMR	0	1	Unmodified	1964.8873	0.88730179	118	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		20.15	20.15	3	0.001181	13581	DP1063-9	115.56	86.066			NaN	NaN	NaN	0	0	Median	5990500	0	5990500	2582	118	2441	6072	12752	12752		1	9606
SHFEQWGTLTDCVVMRDPNTK	1	1	Oxidation (M)	2536.1475	0.14749223	118	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	1	4	0				1		18.543	18.543	3	0.0013254	11346	DP1063-9	110.34	87.936			NaN	NaN	NaN	0	0	Median	18774000	0	18774000	2583	118	2442	6073	12753;12754	12753	133	2	9606
SHFEQWGTLTDCVVMRDPNTKR	1	2	Oxidation (M)	2692.2486	0.24860326	118	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	2	4	0				1		17.868	17.868	4	0.0027586	10368	DP1063-9	80.975	52.162			NaN	NaN	NaN	0	0	Median	28256000	0	28256000	2584	118	2443	6074	12755;12756	12755	133	2	9606
SHTILLVQPTK	1	0	Acetyl (Protein N-term)	1277.7343	0.73433683	323	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	5	0					1	18.508	18.508	2	2.8107E-52	11720	DP1063-10	246.59	231.65			2.4645	1.462	NaN	1	0	Median	64541000	18592000	45949000	2585	323	2444	6075	12757;12758;12759;12760	12760		4	9606
SIAFPSIGSGR	0	1	Unmodified	1090.5771	0.57710791	67	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		19.16	19.16	2	0.045696	12264	DP1063-9	79.489	19.371			NaN	NaN	NaN	0	0	Median	10814000	0	10814000	2586	67	2445	6076	12761	12761		1	9606
SIFQHIQSAQSQR	0	1	Unmodified	1528.7746	0.77463852	570	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				16.468	16.468	3	0.0016299	8291	DP1063-7	114.72	34.476			NaN	NaN	NaN	0	0	Median	40063000	0	40063000	2587	570	2446	6077	12762;12763	12762		2	9606
SIGEYDVLR	0	1	Unmodified	1050.5346	0.53457439	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.58	18.58	2	0.045392	9386	DP1063-6	82.426	36			NaN	NaN	NaN	0	0	Median	11965000	0	11965000	2588	318	2447	6078	12764	12764		1	9606
SILTQIDHILMDKER	1	1	Oxidation (M)	1826.956	0.95603328	543	Q9NY61	AATF	Protein AATF	yes	yes	0	1	1	2	0		1				21.701	21.701	3	0.0087507	15358	DP1063-7	102.52	72.902			NaN	NaN	NaN	0	0	Median	25414000	0	25414000	2589	543	2448	6079	12765	12765	621	1	9606
SILVSPTGPSR	0	1	Unmodified	1112.619	0.61897272	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.5	1.5		1			1	16.841	16.841	2	0.0013206	9512	DP1063-10	140.11	51.164			NaN	NaN	NaN	0	0	Median	213950000	0	213950000	2590	381	2449	6080;6081	12766;12767;12768	12766		3	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Oxidation (M)	2676.216	0.21596573	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.75	0.829		2	1	1		18.046	18.046	2;3	6.3082E-74	10437	DP1063-7	243.04	229.06			0.9592	0.97593	4.5741	4	0	Median	483420000	243050000	240370000	2591	483	2450	6082;6083;6084;6085	12769;12770;12771;12772;12773;12774;12775;12776;12777;12778;12779;12780;12781;12782;12783;12784;12785;12786;12787;12788;12789;12790;12791	12780	562	23	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Unmodified	2660.2211	0.22105111	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				19.064	19.064	3	7.3424E-12	11855	DP1063-7	141.08	141.08			1.0024	1.0329	NaN	1	0	Median	51402000	27589000	23813000	2592	483	2450	6086	12792;12793;12794;12795;12796;12797;12798	12795		7	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	1	1	Oxidation (M)	3169.4557	0.4556955	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.5	0.866		3		1		16.77	16.77	3;4;5	7.681000000000001E-56	8667	DP1063-7	215.42	198.81			0.9222	0.96564	11.902	3	0	Median	398540000	198960000	199580000	2593	483	2451	6087;6088;6089;6090	12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809;12810;12811;12812	12800	562	14	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Oxidation (M)	2319.1417	0.1416618	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			23.983	23.983	3	2.8488E-10	18172	DP1063-8	122.44	122.44			1.3315	1.341	NaN	1	0	Median	51215000	20467000	30748000	2594	124	2452	6091	12813;12814	12814	139	2	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Unmodified	2303.1467	0.14674718	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			24.699	24.699	2	5.3042E-15	19125	DP1063-8	163	135.74			NaN	NaN	NaN	0	0	Median	14096000	0	14096000	2595	124	2452	6092	12815;12816;12817	12815		3	9606
SINPDEAVAYGAAVQAAILSGDK	1	0	Unmodified	2259.1383	0.13829098	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	2.33	0.471		2	1			24.061	24.061	2	6.6781E-15	18349	DP1063-8	161.1	117.55			NaN	NaN	NaN	0	0	Median	25176000	0	25176000	2596	128	2453	6093;6094;6095	12818;12819;12820;12821;12822;12823	12823		6	9606
SINPLGGFVHYGEVTNDFVMLK	1	0	Oxidation (M)	2452.2097	0.20968178	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	4	0				2		22.493	22.493	2;3	9.0745E-07	16512	DP1063-9	105.68	105.68			11.54	11.861	NaN	1	0	Median	112320000	7532400	104790000	2597	201	2454	6096;6097	12824;12825;12826;12827	12824	228	4	9606
SINPLGGFVHYGEVTNDFVMLK	1	0	Unmodified	2436.2148	0.21476716	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		23.027	23.027	3	0.0005073	17279	DP1063-9	105.32	68.282			NaN	NaN	NaN	0	0	Median	5111900	0	5111900	2598	201	2454	6098	12828;12829	12829		2	9606
SIQFVDWCPTGFK	1	0	Unmodified	1583.7442	0.74424959	310	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	yes	no	0	0	0	4.25	0.829			1	1	2	22.155	22.155	2	5.5501E-16	16093	DP1063-9	196.11	196.11			3.085	3.1388	5.8339	2	0	Median	302070000	78031000	224040000	2599	310	2455	6099;6100;6101;6102	12830;12831;12832;12833;12834;12835;12836;12837;12838;12839	12838		10	9606
SIQLDGLVWGASK	1	0	Unmodified	1372.7351	0.73506511	180	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		21.75	21.75	2	0.045631	15661	DP1063-9	56.936	56.936			0.5847	0.60098	NaN	1	0	Median	7289400	4747300	2542000	2600	180	2456	6103	12840	12840		1	9606
SISADDDLQESSR	0	1	Unmodified	1421.627	0.62703081	153	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	4	0				1		15.613	15.613	2	5.5005E-07	7392	DP1063-9	156.51	120.6			NaN	NaN	NaN	0	0	Median	10726000	0	10726000	2601	153	2457	6104	12841;12842	12841		2	9606
SISLASCHQLHSK	1	0	Unmodified	1466.73	0.72999651	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1.5	0.5	1	1				14.227	14.227	3	0.011444	4014	DP1063-6	84.734	60.013			NaN	NaN	NaN	0	0	Median	21468000	0	21468000	2602	73	2458	6105;6106	12843;12844;12845	12843		3	9606
SISLYYTGEK	1	0	Unmodified	1159.5761	0.57610486	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0.816		1	1	1		18.116	18.116	2	0.0013877	10655	DP1063-8	146.79	78.793			13.27	13.674	NaN	1	0	Median	379330000	22231000	357100000	2603	155	2459	6107;6108;6109	12846;12847;12848;12849;12850;12851	12848		6	9606
SITVLVEGENTR	0	1	Unmodified	1316.6936	0.69359423	186	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				17.975	17.975	2	0.0070663	10318	DP1063-7	140.07	70.121			NaN	NaN	NaN	0	0	Median	0	0	0	2604	186	2460	6110	12852	12852		1	9606
SIYSQIQEQR	0	1	Unmodified	1250.6255	0.62551466	534	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	4	0				1		17.274	17.274	2	0.01896	9659	DP1063-9	95.502	39.488			NaN	NaN	NaN	0	0	Median	4260000	0	4260000	2605	534	2461	6111	12853	12853		1	9606
SIYYITGESK	1	0	Unmodified	1159.5761	0.57610486	113	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	yes	no	0	0	0	2	0		1				17.618	17.618	2	0.030879	9910	DP1063-7	63.816	45.376			1.741	1.794	NaN	1	0	Median	53154000	22423000	30730000	2606	113	2462	6112	12854	12854		1	9606
SKAEAESLYQSK	2	0	Unmodified	1339.662	0.66195975	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.5	1.12	1	1	1	1		14.014	14.014	2	2.9785000000000003E-25	3692	DP1063-6	285.32	231.56		+	NaN	NaN	NaN	0	0	Median	118820000	118820000	0	2607	88	2463	6113;6114;6115;6116	12855;12856;12857;12858;12859;12860	12856		6	9606
SKEEAEALYHSK	2	0	Unmodified	1390.6729	0.67285879	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2.4	1.5	2	1	1		1	13.463	13.463	2;3	0.00012019	2983	DP1063-6	146.67	107.09		+	NaN	NaN	NaN	0	0	Median	127700000	127700000	0	2608	20	2464	6117;6118;6119;6120;6121	12861;12862;12863;12864;12865;12866;12867	12863		7	9606
SKGYAFIEFASFEDAK	2	0	Unmodified	1808.8621	0.86211612	155	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				21.14	21.14	3	0.0087162	14658	DP1063-7	84.403	70.462			NaN	NaN	NaN	0	0	Median	11799000	0	11799000	2609	155	2465	6122	12868	12868		1	9606
SKVDEAVAVLQAHQAK	2	0	Unmodified	1692.9159	0.91588303	131	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	3	0			1			17.051	17.051	3	0.039532	9514	DP1063-8	66.826	37.335			NaN	NaN	NaN	0	0	Median	23933000	0	23933000	2610	131	2466	6123	12869	12869		1	9606
SLAGSSGPGASSGTSGDHGELVVR	0	1	Unmodified	2184.0407	0.040702201	180	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		15.959	15.959	3	2.6898E-16	7918	DP1063-9	167.61	144.65			0.91453	0.95664	NaN	1	0	Median	23234000	11235000	11998000	2611	180	2467	6124	12870;12871	12870		2	9606
SLAQEALR	0	1	Unmodified	886.48723	0.48723027	567	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				16.055	16.055	2	0.0057201	7770	DP1063-7	117.4	48.201			NaN	NaN	NaN	0	0	Median	15482000	15482000	0	2612	567	2468	6125	12872	12872		1	9606
SLASVSYAAVDFFRPSAQR	0	2	Unmodified	2071.0487	0.048688112	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	1	2	0		1				21.921	21.921	3	0.005173	15741	DP1063-7	91.969	65.557			NaN	NaN	NaN	0	0	Median	25321000	0	25321000	2613	490	2469	6126	12873;12874	12874		2	9606
SLDLDSIIAEVK	1	0	Unmodified	1301.7078	0.70784731	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	1.41	1	1	1	1	1	23.332	23.332	2	5.8919E-09	17406	DP1063-8	201.84	124.56		+	NaN	NaN	NaN	0	0	Median	214050000	214050000	0	2614	88	2470	6127;6128;6129;6130;6131	12875;12876;12877;12878;12879;12880;12881;12882;12883;12884;12885	12882		11	9606
SLEEDQEPIVSHQKPGK	2	0	Unmodified	1919.9589	0.95887005	378	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2	0		2				14.479	14.479	3;4	0.00086398	5565	DP1063-7	116	95.609			NaN	NaN	NaN	0	0	Median	44612000	0	44612000	2615	378	2471	6132;6133	12886;12887;12888	12886		3	9606
SLEEGEGPIAVIMTPTR	0	1	Oxidation (M)	1814.9084	0.90841439	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	2	0		1				19.769	19.769	2	0.0009569	12789	DP1063-7	131.32	79.324			NaN	NaN	NaN	0	0	Median	15565000	0	15565000	2616	436	2472	6134	12889;12890	12889	531	2	9606
SLEEIYLFSLPIK	1	0	Unmodified	1550.8596	0.85959692	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		24.45	24.45	2	1.5331E-31	18942	DP1063-9	213.8	213.8			4.1662	4.2822	NaN	1	0	Median	45182000	8945400	36237000	2617	141	2473	6135	12891;12892;12893;12894	12894		4	9606
SLESLDTSLFAK	1	0	Unmodified	1309.6765	0.67654718	349	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			2			21.087	21.087	2	0.00040393	14601	DP1063-8	144.77	84.749			NaN	NaN	NaN	0	0	Median	42154000	0	42154000	2618	349	2474	6136;6137	12895;12896;12897	12895		3	9606
SLEYCSTASIDSENPPDLNK	1	0	Unmodified	2238.9951	0.99505714	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.533	18.533	2	3.4752E-06	9332	DP1063-6	114.69	76.898			NaN	NaN	NaN	0	0	Median	0	0	0	2619	318	2475	6138	12898	12898		1	9606
SLGNILQAK	1	0	Unmodified	942.54983	0.54983053	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	0	1					18.028	18.028	2	0.015079	8696	DP1063-6	98.299	52.581			NaN	NaN	NaN	0	0	Median	12200000	0	12200000	2620	365	2476	6139	12899;12900	12899		2	9606
SLGNILQAKPTSSPAK	2	0	Unmodified	1610.8992	0.89917033	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	1	0	1					16.829	16.829	2	4.7246E-17	7145	DP1063-6	198.37	95.84			NaN	NaN	NaN	0	0	Median	8974400	0	8974400	2621	365	2477	6140	12901;12902	12901		2	9606
SLGPPQGEEDSVPR	0	1	Unmodified	1466.7001	0.70013617	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.475	16.475	2	0.0015669	6753	DP1063-6	126.71	87.087			NaN	NaN	NaN	0	0	Median	22096000	0	22096000	2622	318	2478	6141	12903;12904	12903		2	9606
SLGSTAGTDITVNSVILLPK	1	0	Unmodified	1985.1045	0.10447166	412	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	3	0			1			21.941	21.941	2	0.0010642	15726	DP1063-8	112.62	77.128			NaN	NaN	NaN	0	0	Median	10217000	0	10217000	2623	412	2479	6142	12905	12905		1	9606
SLGSVQAPSYGAR	0	1	Unmodified	1291.6521	0.65206377	100	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		16.611	16.611	2	0.0013788	8727	DP1063-9	94.465	77.794			1.1431	1.1957	NaN	1	0	Median	18467000	9073500	9393700	2624	100	2480	6143	12906;12907	12906		2	9606
SLGVDMDDKDDAHYAVQAR	1	1	Oxidation (M)	2120.9433	0.94329634	509	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	1	1	2	0		1				15.715	15.715	3	0.00019337	7289	DP1063-7	133.86	105.75			NaN	NaN	NaN	0	0	Median	14587000	0	14587000	2625	509	2481	6144	12908;12909	12909	583	2	9606
SLGYAYVNFQQPADAER	0	1	Unmodified	1927.9064	0.90644055	131	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	2	0		1				19.91	19.91	2	1.625E-15	13014	DP1063-7	179.93	137.09			NaN	NaN	NaN	0	0	Median	19683000	0	19683000	2626	131	2482	6145	12910;12911;12912	12910		3	9606
SLHTLFGDELCK	1	0	Unmodified	1418.6864	0.68640036	12	CON__P02769			yes	yes	0	0	0	2.52	0.892	13	10	40	2	1	24.237	24.237	2;3	4.0876999999999995E-46	11703	DP1063-7	275.28	222.34		+	NaN	NaN	NaN	0	0	Median	9270700000	9270700000	0	2627	12	2483	6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209;6210;6211	12913;12914;12915;12916;12917;12918;12919;12920;12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931;12932;12933;12934;12935;12936;12937;12938;12939;12940;12941;12942;12943;12944;12945;12946;12947;12948;12949;12950;12951;12952;12953;12954;12955;12956;12957;12958;12959;12960;12961;12962;12963;12964;12965;12966;12967;12968;12969;12970;12971;12972;12973;12974;12975;12976;12977;12978;12979;12980;12981;12982;12983;12984;12985;12986;12987;12988;12989;12990;12991;12992;12993;12994;12995;12996;12997;12998;12999;13000;13001;13002;13003;13004;13005;13006;13007;13008;13009;13010;13011;13012	12936		100	
SLHTLFGDELCKVASLR	1	1	Unmodified	1945.0091	0.0091314834	12	CON__P02769			yes	yes	0	0	1	2.5	0.5		1	1			21.148	21.148	3	4.5331E-10	14701	DP1063-8	183.76	149.58		+	NaN	NaN	NaN	0	0	Median	24772000	24772000	0	2628	12	2484	6212;6213	13013;13014;13015	13015		3	
SLICSISNEVPEHPCVSPVSNHVYER	0	1	Acetyl (Protein N-term)	3050.4226	0.42260446	560	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	1	0	0	3	0			1			20.847	20.847	3	3.0918E-07	14303	DP1063-8	115.36	80.345			NaN	NaN	NaN	0	0	Median	21764000	0	21764000	2629	560	2485	6214	13016	13016		1	9606
SLLEGEGSSGGGGR	0	1	Unmodified	1261.5899	0.58985744	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.41	1	1	1	1	1	15.46	15.46	2	2.2418E-10	5484	DP1063-6	173.64	173.64		+	NaN	NaN	NaN	0	0	Median	157780000	157780000	0	2630	16	2486	6215;6216;6217;6218;6219	13017;13018;13019;13020;13021;13022;13023;13024;13025;13026;13027	13019		11	9606
SLLGPYLVFMASTINGYEGTGR	0	1	Oxidation (M)	2361.1675	0.16748262	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				24.166	24.166	2	1.2085E-06	18345	DP1063-7	119.56	119.56			1.8324	1.899	NaN	1	0	Median	10926000	3719700	7206600	2631	514	2487	6220	13028;13029;13030;13031	13028	590	4	9606
SLLIDFFR	0	1	Unmodified	1009.5597	0.55966693	521	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		23.903	23.903	2	0.0007752	18284	DP1063-9	132.57	86.551			16	16.737	NaN	1	0	Median	13803000	765870	13037000	2632	521	2488	6221	13032;13033	13032		2	9606
SLLVIPNTLAVNAAQDSTDLVAK	1	0	Unmodified	2352.29	0.2900406	149	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			23.079	23.079	2	8.6391E-06	17178	DP1063-8	120.77	85.998			NaN	NaN	NaN	0	0	Median	15730000	0	15730000	2633	149	2489	6222	13034;13035	13035		2	9606
SLNNQFASFIDK	1	0	Unmodified	1382.683	0.68302954	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	1.41	1	1	1	1	1	20.626	20.626	2	3.7582E-06	12135	DP1063-6	169.21	45.413		+	NaN	NaN	NaN	0	0	Median	158970000	158970000	0	2634	88	2490	6223;6224;6225;6226;6227	13036;13037;13038;13039;13040;13041;13042;13043;13044;13045	13039		10	9606
SLNNQFASFIDKVR	1	1	Unmodified	1637.8526	0.85255449	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	5	0					1	20.823	20.823	3	0.0074946	14789	DP1063-10	104.41	69.403		+	NaN	NaN	NaN	0	0	Median	12051000	12051000	0	2635	88	2491	6228	13046	13046		1	9606
SLNTDVLFGLLR	0	1	Unmodified	1346.7558	0.75580056	467	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	2	0		1				24.214	24.214	2	0.025682	18612	DP1063-7	87.806	24.731			NaN	NaN	NaN	0	0	Median	4281400	0	4281400	2636	467	2492	6229	13047	13047		1	9606
SLPDLGLR	0	1	Unmodified	869.49707	0.49706667	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		19.055	19.055	1;2	0.0017819	11783	DP1063-7	101.69	46.187			0.91067	0.92221	13.548	4	0	Median	643200000	344630000	298570000	2637	130	2493	6230;6231;6232;6233	13048;13049;13050;13051;13052;13053;13054	13051		6	9606
SLPDLGLRQENIR	0	2	Unmodified	1509.8263	0.82633974	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				18.148	18.148	2;3	0.0013706	10530	DP1063-7	83.182	83.182			0.80104	0.80793	16.849	2	0	Median	77407000	37109000	40298000	2638	130	2494	6234;6235	13055;13056;13057;13058;13059	13055		5	9606
SLPDTELMKDTAR	1	1	Oxidation (M)	1491.7239	0.72390808	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2	0		2				15.634	15.634	2;3	0.0091461	7068	DP1063-7	115.57	48.882			NaN	NaN	NaN	0	0	Median	54522000	0	54522000	2639	211	2495	6236;6237	13060;13061;13062	13061	245	3	9606
SLQNYIMPYAMTPIFDEK	1	0	2 Oxidation (M)	2192.017	0.016978557	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	2	0	1	0	2					21.843	21.843	2	0.0012533	13612	DP1063-6	100.54	66.574			NaN	NaN	NaN	0	0	Median	0	0	0	2640	73	2496	6238;6239	13063;13064	13063	66;67	2	9606
SLQSVAEER	0	1	Unmodified	1017.5091	0.50908792	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	3	2	1				1	15.361	15.361	2	0.0035668	7641	DP1063-10	132.76	79.972			NaN	NaN	NaN	0	0	Median	235350000	0	235350000	2641	257	2497	6240;6241	13065;13066;13067	13065		3	9606
SLQYSNTGDMILVVSGSSQAK	1	0	Oxidation (M)	2200.0682	0.068162505	539	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	1	0	2	0		1				18.948	18.948	2	0.043787	11673	DP1063-7	78.069	43.554			NaN	NaN	NaN	0	0	Median	0	0	0	2642	539	2498	6242	13068	13068		1	9606
SLSDALISLQMVYPR	0	1	Oxidation (M)	1707.8866	0.88655673	567	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	1	0	2	0		1				23.084	23.084	2	0.013433	17140	DP1063-7	91.313	54.169			NaN	NaN	NaN	0	0	Median	0	0	0	2643	567	2499	6243	13069	13069	627	1	9606
SLSDNGQPGTPDPADSGGTSAK	1	0	Unmodified	2057.9138	0.91377035	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					15.382	15.382	2	3.2041E-12	5364	DP1063-6	161.49	112.41			NaN	NaN	NaN	0	0	Median	3838700	0	3838700	2644	73	2500	6244	13070;13071	13070		2	9606
SLSLSILK	1	0	Unmodified	859.53787	0.53786886	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	0			1			19.808	19.808	2	0.0038692	12881	DP1063-8	121.99	46.88			NaN	NaN	NaN	0	0	Median	56432000	0	56432000	2645	418	2501	6245	13072;13073	13072		2	9606
SLTNDWEDHLAVK	1	0	Unmodified	1526.7365	0.73652168	113;110	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	2	0		2				18.815	18.815	2;3	0.00067135	11472	DP1063-7	94.402	94.402			1.245	1.2828	2.4558	2	0	Median	90841000	39621000	51220000	2646	110;113	2502	6246;6247	13074;13075;13076	13074		3	9606
SLTQTFATVEVGR	0	1	Unmodified	1407.7358	0.73579339	421	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2	0		1				19.368	19.368	2	0.028249	12286	DP1063-7	83.045	45.349			NaN	NaN	NaN	0	0	Median	18937000	0	18937000	2647	421	2503	6248	13077	13077		1	9606
SLVGLQEELLFQYPDTR	0	1	Unmodified	2007.0313	0.031306713	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	2	0		1				23.538	23.538	2	1.6691E-23	17754	DP1063-7	198.33	140.53			NaN	NaN	NaN	0	0	Median	7503700	0	7503700	2648	543	2504	6249	13078;13079	13079		2	9606
SLVIPEKFQHILR	1	1	Acetyl (Protein N-term)	1620.9352	0.9351619	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	1	0	1	5	0					1	21.278	21.278	3	1.244E-10	15318	DP1063-10	174.24	148.71			2.9489	2.9102	NaN	1	0	Median	31757000	8183400	23573000	2649	273	2505	6250	13080;13081;13082;13083	13082		4	9606
SLVMHTPPVLK	1	0	Oxidation (M)	1236.69	0.69002918	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	4	0				1		15.837	15.837	3	0.029773	7771	DP1063-9	63.408	30.351			NaN	NaN	NaN	0	0	Median	16365000	0	16365000	2650	211	2506	6251	13084	13084	246	1	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	2 Oxidation (M)	2934.4328	0.43277522	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2.57	1.59	3	1		2	1	21.749	21.749	3;4	4.0787E-11	9025	DP1063-6	128.29	128.29			0.81775	0.83495	21.728	5	0	Median	337690000	181060000	156620000	2651	355	2507	6252;6253;6254;6255;6256;6257;6258	13085;13086;13087;13088;13089;13090;13091;13092;13093;13094;13095;13096;13097;13098;13099;13100;13101;13102;13103;13104;13105	13092	449;450	21	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	Oxidation (M)	2918.4379	0.43786059	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	3					20.369	20.369	3;4	9.949E-29	11209	DP1063-6	186.06	186.06			0.81487	0.84162	4.0583	3	0	Median	270480000	156480000	114000000	2652	355	2507	6259;6260;6261	13106;13107;13108;13109;13110;13111;13112;13113;13114;13115;13116	13110	449;450	11	9606
SLVSKGTLVQTK	2	0	Unmodified	1259.7449	0.74490152	142;125	P10412;P16402;Q02539;P16401;P16403	HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1B;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.5;Histone H1.2	no	no	0	0	1	4	0				1		15.04	15.04	3	0.00198	6676	DP1063-9	111.52	96.831			NaN	NaN	NaN	0	0	Median	14283000	0	14283000	2653	125;142	2508	6262	13117;13118	13118		2	9606
SLYQSAGVAPESFEYIEAHGTGTK	1	0	Unmodified	2541.2023	0.2023478	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					19.973	19.973	3	0.0052302	11230	DP1063-6	65.854	57.957			1.4402	1.4691	NaN	1	0	Median	18060000	8523500	9536400	2654	224	2509	6263	13119;13120	13119		2	9606
SMEDFVTWVDSSK	1	0	Oxidation (M)	1545.6657	0.6657245	535	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	1	0	5	0					1	21.055	21.055	2	0.015034	15045	DP1063-10	100.93	74.814			NaN	NaN	NaN	0	0	Median	6897600	0	6897600	2655	535	2510	6264	13121;13122	13122	612	2	9606
SMFAGVPTMR	0	1	2 Oxidation (M)	1127.5104	0.51035025	45	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	2	0	1	0	1					16.169	16.169	2	0.050969	6348	DP1063-6	45.161	28.065			4.8669	5.0901	NaN	1	0	Median	11853000	2065500	9787000	2656	45	2511	6265	13123	13123		1	9606
SMIEISR	0	1	Oxidation (M)	850.42185	0.42185282	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			14.759	14.759	2	0.034858	6509	DP1063-8	62.717	11.145			3.0751	3.1863	NaN	1	0	Median	19886000	4666600	15220000	2657	225	2512	6266	13124	13124		1	9606
SMLMEQDPDVAVTVR	0	1	2 Oxidation (M)	1721.7964	0.7964211	460	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	2	0	2	0		2				17.385	17.385	2	1.5172E-12	9565	DP1063-7	175.48	114.79			NaN	NaN	NaN	0	0	Median	0	0	0	2658	460	2513	6267;6268	13125;13126	13126	541;542	2	9606
SMPIRKDDEVQVVR	1	2	Oxidation (M)	1686.8723	0.87230365	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	1	2	5	0					1	13.999	13.999	3	0.010238	6089	DP1063-10	59.607	38.254			8.0522	9.3039	NaN	1	0	Median	28463000	4012900	24450000	2659	255	2514	6269	13127;13128	13127	316	2	9606
SNASTLESHETEEPAAK	1	0	Unmodified	1799.8174	0.81735077	554	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	3	0			2			14.087	14.087	2;3	1.0048E-06	5624	DP1063-8	131.66	93.643			NaN	NaN	NaN	0	0	Median	8298300	0	8298300	2660	554	2515	6270;6271	13129;13130;13131	13131		3	9606
SNESVDIQDQEEK	1	0	Unmodified	1519.6638	0.66381024	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	0	1					15.064	15.064	2	3.279E-08	5004	DP1063-6	169.52	123.13			NaN	NaN	NaN	0	0	Median	6110500	0	6110500	2661	426	2516	6272	13132;13133	13133		2	9606
SNSEVEDVGPTSHNR	0	1	Unmodified	1626.7234	0.72339081	360	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				13.761	13.761	3	0.022274	4696	DP1063-7	77.372	57.265			NaN	NaN	NaN	0	0	Median	8537200	0	8537200	2662	360	2517	6273	13134;13135	13135		2	9606
SNTVVIMNMQGQIVR	0	1	2 Oxidation (M)	1720.86	0.86002441	412	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	2	0	3	0			2			16.506	16.506	2	4.0029E-08	8726	DP1063-8	161.19	110.4			NaN	NaN	NaN	0	0	Median	0	0	0	2663	412	2518	6274;6275	13136;13137	13136	508;509	2	9606
SNVSDAVAQSTR	0	1	Unmodified	1233.5949	0.59494282	251	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	15.102	15.102	2	0.00061925	7461	DP1063-10	107.83	84.687			1.016	0.73283	NaN	1	0	Median	8335000	3766100	4568900	2664	251	2519	6276	13138;13139;13140	13139		3	9606
SPAESCDLLGDIQTCIR	0	1	Unmodified	1933.8874	0.88736137	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		2				21.346	21.346	2	2.934E-98	14921	DP1063-7	277.82	216.38			NaN	NaN	NaN	0	0	Median	0	0	0	2665	493	2520	6277;6278	13141;13142	13142		2	9606
SPAGLQVLNDYLADK	1	0	Unmodified	1602.8253	0.82533668	167	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	4	0				1		21.967	21.967	2	0.0031277	15969	DP1063-9	90.412	74.522			1.2297	1.2639	NaN	1	0	Median	10712000	4677600	6034800	2666	167	2521	6279	13143	13143		1	9606
SPAGPAATPAQAQAASTPR	0	1	Unmodified	1748.8806	0.88056015	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.33	0.471	2	1				15.085	15.085	2;3	1.3024E-33	4818	DP1063-6	217.19	172.11			NaN	NaN	NaN	0	0	Median	125510000	0	125510000	2667	365	2522	6280;6281;6282	13144;13145;13146;13147;13148	13145		5	9606
SPAPPLLHVAALGQK	1	0	Unmodified	1497.8667	0.86674799	449	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				18.582	18.582	3	0.027025	11173	DP1063-7	79.466	45.466			NaN	NaN	NaN	0	0	Median	0	0	0	2668	449	2523	6283	13149	13149		1	9606
SPASDTYIVFGEAK	1	0	Unmodified	1483.7195	0.71947463	29	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	4	0				1		19.64	19.64	2	0.0026948	12858	DP1063-9	118.48	68.191			NaN	NaN	NaN	0	0	Median	7249600	0	7249600	2669	29	2524	6284	13150;13151	13150		2	9606
SPDTNYLFMGDYVDR	0	1	Oxidation (M)	1807.7723	0.77231483	282	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	1	0	4	0				1		20.31	20.31	2	0.0042699	13780	DP1063-9	115.24	87.81			NaN	NaN	NaN	0	0	Median	4865400	0	4865400	2670	282	2525	6285	13152	13152	337	1	9606
SPEQQLSATQK	1	0	Unmodified	1215.6095	0.60953025	238	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	3	0			1			14.227	14.227	2	1.5114E-05	5668	DP1063-8	166.66	166.66			NaN	NaN	NaN	0	0	Median	18858000	0	18858000	2671	238	2526	6286	13153;13154	13153		2	9606
SPEVLLGSAR	0	1	Unmodified	1027.5662	0.56620887	102	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		17.21	17.21	2	0.00033332	9514	DP1063-9	96.034	40.023			2.0496	2.144	NaN	1	0	Median	16274000	6224000	10050000	2672	102	2527	6287	13155;13156	13155		2	9606
SPEYPEGR	0	1	Unmodified	933.41921	0.41921028	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				13.793	13.793	1;2	1.1009E-09	3332	DP1063-6	161.68	161.68			0.79012	0.7884	1.2151	3	0	Plateau	597580000	321740000	275840000	2673	355	2528	6288;6289;6290	13157;13158;13159;13160;13161;13162;13163;13164;13165;13166	13158		10	9606
SPGEPGGAAPER	0	1	Unmodified	1123.5258	0.52580062	472	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	0	0	2	0		1				13.221	13.221	2	0.029331	3939	DP1063-7	84.658	54.094			NaN	NaN	NaN	0	0	Median	9557700	0	9557700	2674	472	2529	6291	13167;13168	13168		2	9606
SPLAMSHASGVK	1	0	Oxidation (M)	1199.5969	0.59685707	411	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	0	3	0			2			12.86	12.86	2;3	0.0077339	4027	DP1063-8	113.93	73.881			NaN	NaN	NaN	0	0	Median	13121000	0	13121000	2675	411	2530	6292;6293	13169;13170;13171	13170	507	3	9606
SPLLPAVLEGLAK	1	0	Unmodified	1306.786	0.78603805	460	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				23.046	23.046	2	0.0070352	17040	DP1063-7	106.29	41.993			NaN	NaN	NaN	0	0	Median	26616000	0	26616000	2676	460	2531	6294	13172;13173	13172		2	9606
SPPPELTDTATSTKR	1	1	Unmodified	1599.8104	0.8104149	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				14.734	14.734	3	0.0030342	5938	DP1063-7	97.2	54.412			NaN	NaN	NaN	0	0	Median	20435000	0	20435000	2677	211	2532	6295;6296	13174;13175;13176	13175		3	9606
SPPPESMDTPTSTR	0	1	Oxidation (M)	1517.6668	0.66678713	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0.816	1	1	1			13.566	13.566	2	0.0018585	4322	DP1063-7	129.74	66.118			NaN	NaN	NaN	0	0	Median	21957000	0	21957000	2678	211	2533	6297;6298;6299	13177;13178;13179;13180;13181	13179	247	5	9606
SPPPESVDTPTSTK	1	0	Unmodified	1441.6937	0.69365381	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			14.417	14.417	2	1.3138E-07	6007	DP1063-8	159.94	106.86			NaN	NaN	NaN	0	0	Median	54610000	0	54610000	2679	211	2534	6300;6301;6302	13182;13183;13184;13185;13186;13187	13187		6	9606
SPPSVTLFPPSTEELNGNK	1	0	Unmodified	2013.0055	0.0054858935	23	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	20.227	20.227	2	7.0076E-34	13973	DP1063-10	222.81	149.73		+	NaN	NaN	NaN	0	0	Median	11227000	11227000	0	2680	23	2535	6303	13188;13189	13189		2	
SPQILVPTLFNLLSR	0	1	Unmodified	1696.9876	0.98759141	517	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1.5	0.5	1	1				25.602	25.602	2	0.0018155	18023	DP1063-6	122.46	64.657			NaN	NaN	NaN	0	0	Median	2267700	0	2267700	2681	517	2536	6304;6305	13190;13191	13190		2	9606
SPQNQYPAELMR	0	1	Oxidation (M)	1448.6718	0.67181293	186	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	1	0	2	0		1				16.236	16.236	2	0.00099096	8018	DP1063-7	89.171	53.947			1.6018	1.6628	NaN	1	0	Median	20515000	8561800	11954000	2682	186	2537	6306	13192;13193	13193	209	2	9606
SPQPDPVDTPASTK	1	0	Unmodified	1438.694	0.69398816	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			14.803	14.803	2	1.8125E-07	6022	DP1063-7	155.99	104.55			NaN	NaN	NaN	0	0	Median	41126000	0	41126000	2683	211	2538	6307;6308;6309	13194;13195;13196;13197;13198;13199	13198		6	9606
SPQPDPVGTPTIFKPQSK	2	0	Unmodified	1923.0102	0.010177341	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					17.602	17.602	3	0.0065363	8119	DP1063-6	89.011	60.199			NaN	NaN	NaN	0	0	Median	19641000	0	19641000	2684	211	2539	6310	13200	13200		1	9606
SPQPESFK	1	0	Unmodified	918.4447	0.44469675	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					14.301	14.301	2	0.0061832	4025	DP1063-6	116.25	53.272			NaN	NaN	NaN	0	0	Median	16331000	0	16331000	2685	211	2540	6311	13201;13202	13201		2	9606
SPQSDPADTPTNTK	1	0	Unmodified	1457.6634	0.66341631	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		13.222	13.222	2	2.994E-32	3902	DP1063-7	244.71	140.66			NaN	NaN	NaN	0	0	Median	69329000	0	69329000	2686	211	2541	6312;6313;6314;6315	13203;13204;13205;13206;13207;13208;13209;13210	13206		8	9606
SPQVKPASTMGMGPLGK	2	0	2 Oxidation (M)	1716.8539	0.85387639	365	Q13428	TCOF1	Treacle protein	yes	yes	0	2	1	2	0		2				14.331	14.331	2;3	0.010798	5379	DP1063-7	106.54	55.08			NaN	NaN	NaN	0	0	Median	40346000	0	40346000	2687	365	2542	6316;6317	13211;13212;13213	13211	464;465	3	9606
SPSDEYKDNLHQVSK	2	0	Unmodified	1745.822	0.82204222	556	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	4	0				1		14.419	14.419	3	0.0014892	5786	DP1063-9	88.706	88.706			8.2761	8.755	NaN	1	0	Median	21789000	2906300	18883000	2688	556	2543	6318	13214;13215	13215		2	9606
SPSLLQSGAK	1	0	Unmodified	986.53966	0.53965977	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				15.509	15.509	2	0.0057464	6991	DP1063-7	128.86	89.311			NaN	NaN	NaN	0	0	Median	38351000	0	38351000	2689	493	2544	6319	13216;13217	13216		2	9606
SPSLSQSQASR	0	1	Unmodified	1146.5629	0.56291441	515	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				13.477	13.477	2	0.0072153	4292	DP1063-7	121.36	40.064			NaN	NaN	NaN	0	0	Median	6992400	0	6992400	2690	515	2545	6320	13218;13219	13218		2	9606
SPTLYGISHDDLK	1	0	Unmodified	1444.7198	0.71980898	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.679	17.679	2	0.0036749	8216	DP1063-6	115.33	60.856			NaN	NaN	NaN	0	0	Median	7838000	0	7838000	2691	71	2546	6321	13220;13221	13220		2	9606
SPTWFGIPR	0	1	Unmodified	1059.5502	0.55016488	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.828	20.828	2	0.0011142	14222	DP1063-7	94.302	67.34			0.85965	0.89208	NaN	1	0	Median	18338000	8575800	9761800	2692	316	2547	6322	13222;13223;13224;13225;13226	13224		5	9606
SPYQEFTDHLVK	1	0	Unmodified	1462.7092	0.70924429	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		18.816	18.816	3	0.02982	11611	DP1063-9	73.877	37.43			NaN	NaN	NaN	0	0	Median	115120000	0	115120000	2693	141	2548	6323	13227;13228	13228		2	9606
SQDAEVGDGTTSVTLLAAEFLK	1	0	Unmodified	2251.122	0.12197221	488	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			24.745	24.745	2	3.8771E-12	19188	DP1063-8	159.64	120.25			NaN	NaN	NaN	0	0	Median	13251000	0	13251000	2694	488	2549	6324	13229	13229		1	9606
SQDIYLR	0	1	Unmodified	893.46068	0.46068117	342	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	16.165	16.165	2	0.0029875	8698	DP1063-10	120.49	67.852			NaN	NaN	NaN	0	0	Median	206640000	0	206640000	2695	342	2550	6325	13230;13231	13231		2	9606
SQESGYYDR	0	1	Unmodified	1103.452	0.45196697	209	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				14.065	14.065	2	0.038196	5014	DP1063-7	85.862	47.056			NaN	NaN	NaN	0	0	Median	6318100	0	6318100	2696	209	2551	6326	13232	13232		1	9606
SQHDILQMICSK	1	0	Oxidation (M)	1474.6908	0.69083381	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				17.129	17.129	3	0.044572	9165	DP1063-7	57.034	37.823			NaN	NaN	NaN	0	0	Median	22619000	0	22619000	2697	211	2552	6327	13233	13233		1	9606
SQIHDIVLVGGSTR	0	1	Unmodified	1480.7998	0.79979063	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			17.161	17.161	2;3	0.0008334	9576	DP1063-8	106.55	106.55			5.0802	5.264	4.4165	2	0	Median	212930000	29462000	183470000	2698	128	2553	6328;6329	13234;13235;13236;13237;13238;13239	13234		6	9606
SQIHMPGVGDFAVSDISFLPDPCALPEQQK	1	0	Oxidation (M)	3298.5638	0.56384897	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	1	0	2	0		1				22.538	22.538	3	6.7937E-08	16449	DP1063-7	105.21	80.297			NaN	NaN	NaN	0	0	Median	10152000	0	10152000	2699	383	2554	6330	13240;13241	13240	480	2	9606
SQPDPVDTPTSSKPQSK	2	0	Unmodified	1797.8745	0.87447172	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.17	1.07	2	2	1	1		13.523	13.523	2;3	3.8914E-05	4328	DP1063-7	139.34	111.69			NaN	NaN	NaN	0	0	Median	84734000	0	84734000	2700	211	2555	6331;6332;6333;6334;6335;6336	13242;13243;13244;13245;13246;13247;13248;13249;13250;13251	13247		10	9606
SQPFVDHVFTFTILDNR	0	1	Unmodified	2035.0163	0.016325351	459	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		22.611	22.611	3	0.00089118	16678	DP1063-9	118.5	88.692			NaN	NaN	NaN	0	0	Median	20638000	0	20638000	2701	459	2556	6337	13252	13252		1	9606
SQVFSTAADGQTQVEIK	1	0	Unmodified	1807.8952	0.89520716	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				17.984	17.984	2	0.0014523	10321	DP1063-7	122.78	69.214			NaN	NaN	NaN	0	0	Median	10045000	10045000	0	2702	198	2557	6338	13253;13254;13255;13256	13254		4	9606
SQYEQLAEQNR	0	1	Unmodified	1364.6321	0.6320566	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.33	1.25	1	1		1		15.671	15.671	2	1.6749E-34	5764	DP1063-6	261.6	230.11		+	NaN	NaN	NaN	0	0	Median	66179000	66179000	0	2703	16	2558	6339;6340;6341	13257;13258;13259;13260;13261;13262	13258		6	9606
SQYEQLAEQNRK	1	1	Unmodified	1492.727	0.72701962	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	1.49	2	2	1	2	2	14.438	14.438	2;3	3.2464E-06	4234	DP1063-6	180.09	142.37		+	NaN	NaN	NaN	0	0	Median	417580000	417580000	0	2704	16	2559	6342;6343;6344;6345;6346;6347;6348;6349;6350	13263;13264;13265;13266;13267;13268;13269;13270;13271;13272;13273;13274;13275;13276;13277;13278;13279	13270		17	9606
SRDPIIFSVGWR	0	2	Unmodified	1431.7623	0.76228292	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	1	2	0		1				20.382	20.382	3	0.016145	13670	DP1063-7	79.089	38.573			NaN	NaN	NaN	0	0	Median	8053400	0	8053400	2705	383	2560	6351	13280	13280		1	9606
SREIFLSQPILLELEAPLK	1	1	Unmodified	2195.2566	0.25655562	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			2	2		23.5	23.5	2;3	8.9633E-11	17757	DP1063-9	159.18	131.15			NaN	NaN	NaN	0	0	Median	159120000	0	159120000	2706	194;264;265	2561	6352;6353;6354;6355	13281;13282;13283;13284;13285;13286;13287	13284		7	9606
SRLDQELK	1	1	Unmodified	987.53491	0.53490874	217	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	14.218	14.218	2	0.014068	6341	DP1063-10	109.48	58.286			17.748	17.515	NaN	1	0	Median	107690000	5904200	101790000	2707	217	2562	6356	13288	13288		1	9606
SSDNKLEETLTR	1	1	Unmodified	1391.6892	0.68923713	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	1	2	0		1				16.087	16.087	3	0.0052118	7776	DP1063-7	98.182	71.045			NaN	NaN	NaN	0	0	Median	23384000	0	23384000	2708	490	2563	6357	13289;13290	13289		2	9606
SSDVHSSGSSDAHMDASGPSDSDMPSR	0	1	2 Oxidation (M)	2737.0464	0.046393798	43	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	2	0	2	0		1				12.764	12.764	4	0.0010953	3372	DP1063-7	70.316	64.465			NaN	NaN	NaN	0	0	Median	4988300	0	4988300	2709	43	2564	6358	13291;13292	13292	42;43	2	9606
SSELVSANR	0	1	Unmodified	961.48287	0.48287317	21	CON__P41361			yes	yes	0	0	0	4	0				1		13.918	13.918	2	0.0056798	5192	DP1063-9	87.308	37.885		+	1.2259	1.2824	NaN	1	0	Median	9029500	4885500	4144000	2710	21	2565	6359	13293;13294	13294		2	9606
SSFSITR	0	1	Unmodified	796.40792	0.40791731	570	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				15.952	15.952	2	0.0045606	7621	DP1063-7	116.54	30.456			NaN	NaN	NaN	0	0	Median	10461000	0	10461000	2711	570	2566	6360	13295	13295		1	9606
SSFSSDPDEKAQDSK	2	0	Unmodified	1626.7009	0.70092403	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.816	2	2	2			13.322	13.322	2;3	2.5044E-39	4086	DP1063-7	256.95	221.04			NaN	NaN	NaN	0	0	Median	74932000	0	74932000	2712	211	2567	6361;6362;6363;6364;6365;6366	13296;13297;13298;13299;13300;13301;13302;13303;13304;13305;13306;13307	13302		12	9606
SSFYPDGGDQETAK	1	0	Unmodified	1500.6369	0.63686721	544	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		1				16.292	16.292	2	0.014343	8085	DP1063-7	92.611	67.373			NaN	NaN	NaN	0	0	Median	9318400	0	9318400	2713	544	2568	6367	13308;13309	13308		2	9606
SSGEIVYCGQVFEK	1	0	Unmodified	1601.7396	0.73955814	335	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	18.624	18.624	2	2.8687E-16	11869	DP1063-10	196.16	174.38			9.9092	5.8784	NaN	1	0	Median	74324000	7261300	67062000	2714	335	2569	6368	13310;13311;13312;13313;13314;13315	13312		6	9606
SSGPTSLFAVTVAPPGAR	0	1	Unmodified	1713.905	0.90498399	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				20.985	20.985	2	5.8723E-07	14392	DP1063-7	154.23	98.427			NaN	NaN	NaN	0	0	Median	41964000	0	41964000	2715	330	2570	6369	13316;13317	13317		2	9606
SSGPYGGGGQYFAKPR	1	1	Unmodified	1627.7743	0.77430417	118	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		15.997	15.997	2;3	7.5949E-11	7910	DP1063-9	174.46	161.05			9.4746	8.9601	NaN	1	0	Median	90321000	7526400	82794000	2716	118	2571	6370;6371	13318;13319;13320;13321;13322	13319		5	9606
SSGSPYGGGYGSGGGSGGYGSR	0	1	Unmodified	1909.7827	0.7826966	235	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				3		15.726	15.726	2	6.4909E-27	7546	DP1063-9	197.73	175.15			NaN	NaN	NaN	0	0	Median	16849000	0	16849000	2717	235	2572	6372;6373;6374	13323;13324;13325;13326	13324		4	9606
SSGSSSSGLGTVSNSPASQR	0	1	Unmodified	1851.8559	0.85586154	562	Q9UPP1	PHF8	Histone lysine demethylase PHF8	yes	yes	0	0	0	2	0		1				14.943	14.943	2	1.2715E-28	6242	DP1063-7	184.02	145.34			NaN	NaN	NaN	0	0	Median	0	0	0	2718	562	2573	6375	13327	13327		1	9606
SSMGMDISAIDLINIESFSSR	0	1	2 Oxidation (M)	2304.0614	0.061362567	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	2	0	3	0			1			23.338	23.338	2	3.5143E-51	17468	DP1063-8	238.67	209.21			NaN	NaN	NaN	0	0	Median	16583000	0	16583000	2719	35	2574	6376	13328;13329	13329	27;28	2	9606
SSMSGLHLVK	1	0	Oxidation (M)	1073.5539	0.55392962	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	1.15	3	1	1	1		14.435	14.435	2;3	0.00013772	5985	DP1063-8	116.05	90.157			0.9097	0.92557	7.3183	4	0	Median	372940000	189480000	183460000	2720	355	2575	6377;6378;6379;6380;6381;6382	13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343	13339	451	14	9606
SSMSGLHLVK	1	0	Unmodified	1057.559	0.559015	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.01	16.01	2	4.2357E-05	6132	DP1063-6	128.38	128.38			0.92833	0.94699	NaN	1	0	Median	89672000	43914000	45759000	2721	355	2575	6383	13344;13345;13346;13347	13347		4	9606
SSMSGLHLVKQGR	1	1	Oxidation (M)	1414.7351	0.73508189	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					13.453	13.453	3	0.0020285	2995	DP1063-6	69.864	69.864			0.88982	0.93971	NaN	1	0	Median	4679100	2723100	1956000	2722	355	2576	6384	13348;13349;13350;13351;13352	13350	451	5	9606
SSPELEDTATSSK	1	0	Unmodified	1350.6151	0.61506914	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					14.627	14.627	2	0.00040762	4409	DP1063-6	139.86	100.84			NaN	NaN	NaN	0	0	Median	9363500	0	9363500	2723	211	2577	6385	13353;13354	13353		2	9606
SSPQFGVTLLTYELLQR	0	1	Unmodified	1951.0415	0.041477469	555	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	3	0			1			24.604	24.604	2	0.035571	19023	DP1063-8	80.312	47.688			NaN	NaN	NaN	0	0	Median	4199700	0	4199700	2724	555	2578	6386	13355	13355		1	9606
SSQAFFSK	1	0	Unmodified	900.43413	0.43413207	34	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2	0		1				16.171	16.171	2	0.020968	7963	DP1063-7	101.33	49.028			NaN	NaN	NaN	0	0	Median	11630000	0	11630000	2725	34	2579	6387	13356	13356		1	9606
SSQPDPDKNPASSK	2	0	Unmodified	1456.6794	0.67940073	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				12.586	12.586	3	0.00048979	1987	DP1063-6	128.73	94.044			NaN	NaN	NaN	0	0	Median	17712000	0	17712000	2726	211	2580	6388;6389	13357;13358;13359;13360	13357		4	9606
SSQPQAGSQGPQTFR	0	1	Unmodified	1574.7437	0.74373232	364	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	3	0			1			14.898	14.898	2	0.0072051	6665	DP1063-8	96.82	53.512			NaN	NaN	NaN	0	0	Median	0	0	0	2727	364	2581	6390	13361	13361		1	9606
SSQSSSQQFSGIGR	0	1	Unmodified	1454.675	0.67498405	469	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	2	0		1				15.706	15.706	2	0.0010543	7355	DP1063-7	134.38	112.39			0.81088	0.84116	NaN	1	0	Median	15871000	7340200	8530400	2728	469	2582	6391	13362;13363	13362		2	9606
SSRPGREDVGAAGAR	0	3	Acetyl (Protein N-term)	1526.755	0.75496571	457	Q8TA86	RP9	Retinitis pigmentosa 9 protein	yes	yes	1	0	2	4	0				1		13.328	13.328	3	0.0023798	4396	DP1063-9	93.649	56.711			NaN	NaN	NaN	0	0	Median	5805400	0	5805400	2729	457	2583	6392	13364	13364		1	9606
SSTATHPPGPAVQLNK	1	0	Unmodified	1603.8318	0.83181904	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.29	1.03		2	2	2	1	14.801	14.801	2;3	3.7832E-17	5990	DP1063-7	188.27	150.25			NaN	NaN	NaN	0	0	Median	225280000	0	225280000	2730	381	2584	6393;6394;6395;6396;6397;6398;6399	13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376	13370		12	9606
SSTPLPTISSSAENTR	0	1	Unmodified	1646.8111	0.81114318	206	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	4	0				1		17.225	17.225	2	0.002366	9513	DP1063-9	117.93	72.053			NaN	NaN	NaN	0	0	Median	9207900	0	9207900	2731	206	2585	6400	13377;13378;13379	13377		3	9606
STAGDTHLGGEDFDNR	0	1	Unmodified	1690.7183	0.71830543	128	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	2.5	0.5		2	2			15.642	15.642	2;3	2.4321E-103	7534	DP1063-8	287.29	287.29			4.7674	4.8739	8.8644	4	0	Median	451670000	84570000	367100000	2732	128	2586	6401;6402;6403;6404	13380;13381;13382;13383;13384;13385;13386;13387;13388;13389;13390;13391	13389		12	9606
STCIYGGAPK	1	0	Unmodified	1052.4961	0.4960804	148;469	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			14.968	14.968	2	0.016004	6773	DP1063-8	99.136	74.241			NaN	NaN	NaN	0	0	Median	42150000	0	42150000	2733	469;148	2587	6405	13392	13392		1	9606
STELLIR	0	1	Unmodified	830.48617	0.48616764	313	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	no	no	0	0	0	5	0					1	17.12	17.12	2	0.015385	9915	DP1063-10	122.98	54.58			NaN	NaN	NaN	0	0	Median	0	0	0	2734	313	2588	6406	13393	13393		1	9606
STESLQANVQR	0	1	Unmodified	1231.6157	0.61567826	174	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4.5	0.5				1	1	14.724	14.724	2	1.2569E-31	7017	DP1063-10	219.51	219.51			8.917	7.7453	41.452	2	0	Median	217990000	21409000	196590000	2735	174	2589	6407;6408	13394;13395;13396;13397;13398;13399;13400;13401	13397		8	9606
STFVLDEFKR	1	1	Unmodified	1240.6452	0.64518747	175	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	4	0				2		18.72	18.72	2;3	0.019294	11635	DP1063-9	66.299	38.527			1.768	1.672	31.081	2	0	Median	21784000	7221300	14563000	2736	175	2590	6409;6410	13402;13403	13402		2	9606
STGEAFVQFASQEIAEK	1	0	Unmodified	1840.8843	0.88430813	184	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	4	0.816			1	1	1	21.75	21.75	2	5.7039999999999996E-36	15435	DP1063-8	214.48	214.48			2.0093	2.0237	NaN	1	0	Median	133660000	37141000	96515000	2737	184	2591	6411;6412;6413	13404;13405;13406;13407;13408;13409	13406		6	9606
STGLELETPSLVPVKK	2	0	Unmodified	1696.9611	0.96110188	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				18.936	18.936	3	0.021683	11684	DP1063-7	75.998	50.02			NaN	NaN	NaN	0	0	Median	17705000	0	17705000	2738	482	2592	6414	13410;13411	13411		2	9606
STGSWSTLQTQDR	0	1	Unmodified	1465.6797	0.67973508	24	CON__Q3KUS7			yes	yes	0	0	0	4	0				1		16.914	16.914	2	1.892E-10	9142	DP1063-9	183.85	127.84		+	NaN	NaN	NaN	0	0	Median	20527000	20527000	0	2739	24	2593	6415	13412;13413	13412		2	
STILAVDNFNGIK	1	0	Unmodified	1390.7456	0.7456298	573	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		20.129	20.129	2	0.0011794	13542	DP1063-9	134.57	82.287			NaN	NaN	NaN	0	0	Median	9864100	0	9864100	2740	573	2594	6416	13414	13414		1	9606
STLEPVEK	1	0	Unmodified	901.47566	0.47566253	124;145	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0.816		1	1	1		14.348	14.348	2	0.0025291	5894	DP1063-8	104.75	58.795			4.1236	4.1531	12.301	3	0	Plateau	718490000	148140000	570340000	2741	145;124	2595	6417;6418;6419	13415;13416;13417;13418	13417		4	9606
STLIQCLIR	0	1	Unmodified	1102.6169	0.61686423	383	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	2	0		1				20.753	20.753	2	0.0094956	14103	DP1063-7	110.31	73.915			NaN	NaN	NaN	0	0	Median	15939000	0	15939000	2742	383	2596	6420	13419;13420	13419		2	9606
STLVGHDTFTK	1	0	Unmodified	1204.6088	0.60880197	28	CON__Streptavidin			yes	yes	0	0	0	3.6	1.62	2	1	1	1	5	15.884	15.884	2;3	4.4838E-09	8073	DP1063-10	212.21	164.25		+	NaN	NaN	NaN	0	0	Median	32126000000	32126000000	0	2743	28	2597	6421;6422;6423;6424;6425;6426;6427;6428;6429;6430	13421;13422;13423;13424;13425;13426;13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437;13438;13439;13440;13441;13442;13443;13444;13445;13446;13447;13448;13449;13450;13451;13452;13453;13454;13455;13456;13457;13458;13459;13460;13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473;13474;13475;13476;13477;13478;13479;13480;13481;13482;13483;13484;13485;13486;13487;13488;13489;13490;13491;13492;13493;13494	13426		74	
STMQELNSR	0	1	Unmodified	1064.4921	0.49205765	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	1	1		1			14.644	14.644	2	0.0056719	6263	DP1063-8	123.98	69.207		+	NaN	NaN	NaN	0	0	Median	34278000	34278000	0	2744	19	2598	6431;6432	13495;13496;13497;13498	13498		4	9606
STNENANTPAAR	0	1	Acetyl (Protein N-term)	1286.5851	0.58510641	237	P52292	KPNA2	Importin subunit alpha-1	yes	yes	1	0	0	3	0			1			13.944	13.944	2	2.8559E-05	5362	DP1063-8	163.66	124.36			5.6723	5.8775	NaN	1	0	Median	16564000	2585600	13978000	2745	237	2599	6433	13499;13500	13500		2	9606
STNGDTFLGGEDFDQALLR	0	1	Unmodified	2054.9545	0.95451296	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				22.456	22.456	2	2.7772E-08	16329	DP1063-7	164.88	125.49			3.182	3.2979	NaN	1	0	Median	24810000	7005300	17804000	2746	198	2600	6434	13501;13502	13501		2	9606
STPKEETVNDPEEAGHR	1	1	Unmodified	1894.8657	0.86569795	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	1	3	0			2			13.159	13.159	3;4	0.00024133	4367	DP1063-8	133.86	118.46			3.9073	3.9287	13.972	2	0	Median	50343000	13814000	36529000	2747	35	2601	6435;6436	13503;13504;13505	13504		3	9606
STTTGHLIYK	1	0	Unmodified	1119.5924	0.59242362	309	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.67	1.25	1		1	1		14.243	14.243	2	3.8301E-05	5762	DP1063-8	129.42	87.134			1.4103	1.4204	3.3174	3	0	Median	137150000	55445000	81705000	2748	309	2602	6437;6438;6439	13506;13507;13508;13509;13510;13511;13512;13513;13514;13515	13510		10	9606
STVALTAAR	0	1	Unmodified	888.50288	0.50288033	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				14.819	14.819	2	0.0070645	6049	DP1063-7	118.74	65.806			NaN	NaN	NaN	0	0	Median	54163000	0	54163000	2749	514	2603	6440	13516;13517	13516		2	9606
STVAQLVK	1	0	Unmodified	844.50182	0.5018177	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			15.757	15.757	2	0.030003	7750	DP1063-8	68.915	17.949			1.2625	1.2715	NaN	1	0	Median	42349000	20836000	21514000	2750	170	2604	6441	13518	13518		1	9606
STVENFGQLGR	0	1	Unmodified	1206.5993	0.59929991	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					17.689	17.689	2	0.02843	8223	DP1063-6	88.177	40.603			NaN	NaN	NaN	0	0	Median	7165000	0	7165000	2751	57	2605	6442	13519	13519		1	9606
STVVPVPYEK	1	0	Unmodified	1117.6019	0.60192568	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.253	17.253	2	0.041498	9356	DP1063-7	61.593	40.622			1.0953	1.1286	NaN	1	0	Median	18669000	8328500	10341000	2752	316	2606	6443	13520	13520		1	9606
SVAPAAPTSCDFSPGDLVWAK	1	0	Unmodified	2175.0307	0.030654786	240	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	2	0		1				21.672	21.672	2	0.023155	15368	DP1063-7	80.371	54.723			NaN	NaN	NaN	0	0	Median	7991000	0	7991000	2753	240	2607	6444	13521	13521		1	9606
SVDETLR	0	1	Unmodified	818.4134	0.41339662	341;358	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	0	5	0					1	14.26	14.26	2	0.010984	6428	DP1063-10	89.369	46.303			1.9116	1.3788	NaN	1	0	Median	19825000	6376600	13448000	2754	341;358	2608	6445	13522;13523	13522		2	9606
SVFALTNGIYPHK	1	0	Unmodified	1445.7667	0.76669959	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				2		19.345	19.345	2;3	0.00017408	12479	DP1063-9	146.11	91.568			NaN	NaN	NaN	0	0	Median	48532000	0	48532000	2755	336	2609	6446;6447	13524;13525;13526;13527	13526		4	9606
SVFGHICSHLTPR	0	1	Unmodified	1509.7511	0.7510663	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				16.846	16.846	3	0.0010349	8794	DP1063-7	126.34	92.376			NaN	NaN	NaN	0	0	Median	32618000	0	32618000	2756	493	2610	6448	13528;13529	13529		2	9606
SVGDGETVEFDVVEGEK	1	0	Unmodified	1794.816	0.81595379	306;144	P16989;Q9Y2T7;P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	no	no	0	0	0	4	0				2		19.668	19.668	2	6.2585E-28	12833	DP1063-9	208.51	169.64			NaN	NaN	NaN	0	0	Median	69282000	0	69282000	2757	144;306	2611	6449;6450	13530;13531;13532	13530		3	9606
SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK	2	0	Unmodified	3471.6642	0.66415118	306	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		19.988	19.988	3	7.4604E-12	13358	DP1063-9	93.542	93.542			4.7256	4.999	NaN	1	0	Median	40766000	7564900	33201000	2758	306	2612	6451	13533;13534	13533		2	9606
SVGELPSTVESLQK	1	0	Unmodified	1472.7722	0.77223848	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.541	18.541	2	0.0029256	11350	DP1063-8	116.84	78.061			NaN	NaN	NaN	0	0	Median	19497000	19497000	0	2759	344	2613	6452	13535	13535		1	9606
SVHCQAGDTVGEGDLLVELE	0	0	Unmodified	2126.979	0.97901315	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		21.586	21.586	2	3.1979E-60	15208	DP1063-7	249.19	200.62			NaN	NaN	NaN	0	0	Median	0	0	0	2760	94	2614	6453;6454;6455	13536;13537;13538;13539;13540;13541;13542	13537		7	9606
SVHSSVPLLNSK	1	0	Unmodified	1266.6932	0.6932003	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					15.954	15.954	2;3	1.8446999999999998E-22	6105	DP1063-6	233.09	212.31			0.8973	0.91533	0.11338	2	0	Median	272780000	141180000	131600000	2761	355	2615	6456;6457	13543;13544;13545;13546;13547;13548;13549	13545		7	9606
SVHSSVPLLNSKDPIDR	1	1	Unmodified	1862.985	0.98502522	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.6	0.49	2	3				16.857	16.857	2;3;4	5.9772E-11	7085	DP1063-6	168.82	139.48			0.80236	0.84734	12.301	4	0	Median	486880000	262620000	224260000	2762	355	2616	6458;6459;6460;6461;6462	13550;13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563	13556		14	9606
SVNDQPSGNLPFLKPDDIQYFDK	2	0	Unmodified	2636.2758	0.27584709	69	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				21.717	21.717	3	0.053571	15416	DP1063-7	54.235	25.109			NaN	NaN	NaN	0	0	Median	12499000	0	12499000	2763	69	2617	6463	13564	13564		1	9606
SVNELIYKR	1	1	Unmodified	1120.6241	0.6240581	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.833	15.833	2	0.0096666	7695	DP1063-9	124.98	74.943			NaN	NaN	NaN	0	0	Median	38116000	0	38116000	2764	152	2618	6464	13565;13566	13566		2	9606
SVPTTQCLDNSK	1	0	Unmodified	1348.6293	0.62927941	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			14.961	14.961	2	4.2258E-06	6233	DP1063-7	160.36	133.31			NaN	NaN	NaN	0	0	Median	72553000	0	72553000	2765	211	2619	6465;6466;6467	13567;13568;13569;13570;13571	13570		5	9606
SVQTTLQTDEVK	1	0	Unmodified	1347.6882	0.6881745	68	O94905;O75477	ERLIN2;ERLIN1	Erlin-2;Erlin-1	yes	no	0	0	0	4	0				1		16.15	16.15	2	0.00021225	8192	DP1063-9	123.11	123.11			2.0454	2.1023	NaN	1	0	Median	14323000	5175800	9147000	2766	68	2620	6468	13572	13572		1	9606
SVSFEQAVR	0	1	Unmodified	1021.5193	0.51925868	368	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		16.787	16.787	2	0.0085227	8968	DP1063-9	113.26	32.065			NaN	NaN	NaN	0	0	Median	19163000	0	19163000	2767	368	2621	6469	13573;13574;13575	13575		3	9606
SVSSQSSSSVSSQVTTAGSGK	1	0	Unmodified	1956.9236	0.92360676	542	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	3	0			1			14.956	14.956	2	1.2427E-06	6748	DP1063-8	119.56	87.568			NaN	NaN	NaN	0	0	Median	0	0	0	2768	542	2622	6470	13576	13576		1	9606
SVTEQGAELSNEER	0	1	Unmodified	1547.7063	0.70634376	302	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4	0				1		15.383	15.383	2	5.4445E-32	7148	DP1063-9	214.04	183.22			1.1186	1.1701	NaN	1	0	Median	17973000	9265900	8706900	2769	302	2623	6471	13577;13578	13578		2	9606
SVTNEDVTQEELGGAK	1	0	Unmodified	1675.7901	0.79007339	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.566	16.566	2	1.9677000000000003E-142	8807	DP1063-8	317.44	317.44			1.0364	1.0545	3.7313	2	0	Median	907630000	446550000	461080000	2770	95	2624	6472;6473	13579;13580;13581;13582;13583;13584	13581		6	9606
SVVCSDVEQQVIVIEEEKK	2	0	Unmodified	2217.1199	0.11986372	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	2	0		1				19.773	19.773	3	0.012307	12892	DP1063-7	80.316	54.428			NaN	NaN	NaN	0	0	Median	27076000	0	27076000	2771	436	2625	6474	13585	13585		1	9606
SVVEFLQGYIGVPHGGFPEPFR	0	1	Unmodified	2431.2325	0.23246614	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.764		8	2	2		25.688	25.688	2;3;4	1.7425E-97	18211	DP1063-7	309.56	309.56			0.72998	0.73667	15.745	5	0	Median	759950000	420770000	339180000	2772	130	2626	6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486	13586;13587;13588;13589;13590;13591;13592;13593;13594;13595;13596;13597;13598;13599;13600;13601;13602;13603;13604;13605;13606;13607;13608;13609;13610;13611;13612;13613;13614;13615;13616;13617	13593		32	9606
SWLLPVIR	0	1	Unmodified	982.59639	0.59638679	420	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				22.436	22.436	2	0.054609	16413	DP1063-7	83.614	48.121			NaN	NaN	NaN	0	0	Median	5354900	0	5354900	2773	420	2627	6487	13618	13618		1	9606
SYCAEIAHNVSSK	1	0	Unmodified	1464.6667	0.66672755	296	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					2	15.482	15.482	2;3	1.123E-06	7839	DP1063-10	187.58	170.86			9.8987	5.8722	8.4228	2	0	Median	140100000	14903000	125190000	2774	296	2628	6488;6489	13619;13620;13621;13622;13623;13624	13620		6	9606
SYELPDGQVITIGNER	0	1	Unmodified	1789.8846	0.88464248	252;308	P63261;P60709;Q6S8J3;A5A3E0;Q9BYX7;Q562R1;P68133;P68032;P63267;P62736	ACTG1;ACTB;POTEE;POTEF;POTEKP;ACTBL2;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	4	0				1		21.029	21.029	2	6.0438E-11	14664	DP1063-9	180.24	180.24			0.9489	0.99258	NaN	1	0	Median	69074000	40337000	28738000	2775	252;308	2629	6490	13625;13626;13627;13628	13628		4	9606
SYLNMDAIMEAIK	1	0	2 Oxidation (M)	1529.7106	0.7105662	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	0	2	0		1				19.414	19.414	2	0.0092003	12320	DP1063-7	96.113	35.716			NaN	NaN	NaN	0	0	Median	0	0	0	2776	94	2630	6491	13629	13629	91;92	1	9606
SYLNMDAIMEAIKK	2	0	2 Oxidation (M)	1657.8055	0.80552922	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	1	2.5	0.5		1	1			18.134	18.134	2;3	0.00038665	10549	DP1063-7	105.03	86.842			1.1922	1.1949	2.2645	2	0	Median	102630000	41090000	61537000	2777	94	2631	6492;6493	13630;13631;13632;13633;13634	13631	91;92	5	9606
TAAENDFVTLK	1	0	Unmodified	1207.6085	0.60846762	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			1			17.894	17.894	2	0.033773	10436	DP1063-8	83.883	53.086		+	NaN	NaN	NaN	0	0	Median	22411000	22411000	0	2778	20	2632	6494	13635	13635		1	9606
TAAENDFVTLKK	2	0	Unmodified	1335.7034	0.70343063	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2	0.816	1	1	1			16.047	16.047	2	0.00029524	6280	DP1063-6	151.22	100.51		+	NaN	NaN	NaN	0	0	Median	35625000	35625000	0	2779	20	2633	6495;6496;6497	13636;13637;13638;13639;13640;13641	13637		6	9606
TAAFLLPILSQIYSDGPGEALR	0	1	Unmodified	2331.2474	0.2474475	36	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			26.52	26.52	2	0.00081671	21162	DP1063-8	107.69	78.05			NaN	NaN	NaN	0	0	Median	2006800	0	2006800	2780	36	2634	6498	13642	13642		1	9606
TAANLVVETGQDGVQIR	0	1	Unmodified	1769.9272	0.92717599	424	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	4	0.816			1	1	1	18.925	18.925	2	7.3733E-49	12303	DP1063-10	246.51	176.84			NaN	NaN	NaN	0	0	Median	60641000	0	60641000	2781	424	2635	6499;6500;6501	13643;13644;13645;13646;13647;13648	13643		6	9606
TAEEENPEHVEIQK	1	0	Unmodified	1651.7689	0.76894402	34	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2	0		1				14.773	14.773	2	3.9023E-14	6014	DP1063-7	208.33	126.56			NaN	NaN	NaN	0	0	Median	4734700	0	4734700	2782	34	2636	6502	13649;13650	13650		2	9606
TAEEVAALIR	0	1	Unmodified	1071.5924	0.59242362	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					18.782	18.782	2	0.0075322	9684	DP1063-6	122.19	72.061			NaN	NaN	NaN	0	0	Median	10464000	0	10464000	2783	431	2637	6503	13651	13651		1	9606
TAGPEQGPGLGGR	0	1	Unmodified	1195.5945	0.59454889	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.712	14.712	2	0.00043086	6289	DP1063-8	135.55	101.34			56.309	55.2	41.474	3	0	Median	1261100000	21501000	1239600000	2784	418	2638	6504;6505;6506;6507;6508	13652;13653;13654;13655;13656;13657;13658;13659;13660;13661;13662;13663;13664	13662		13	9606
TAITVEHLAIK	1	0	Unmodified	1194.6972	0.69722304	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		2				17.03	17.03	2;3	0.0056889	9020	DP1063-7	104.43	85.468			NaN	NaN	NaN	0	0	Median	126410000	0	126410000	2785	531	2639	6509;6510	13665;13666;13667;13668	13666		4	9606
TALIHDGLAR	0	1	Unmodified	1065.5931	0.59309232	169	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	15.521	15.521	2	0.0062648	7911	DP1063-10	80.165	58.865			4.3034	3.1038	NaN	1	0	Median	15730000	2816500	12914000	2786	169	2640	6511	13669;13670;13671	13670		3	9606
TALLGGGQR	0	1	Unmodified	871.48756	0.48756462	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	14.939	14.939	2	0.00084776	6700	DP1063-8	98.418	51.424			1.0959	1.1356	19.641	3	0	Plateau	649950000	304700000	345260000	2787	95	2641	6512;6513;6514	13672;13673;13674;13675;13676;13677;13678	13675		7	9606
TAMEVEAPSKPAR	1	1	Oxidation (M)	1401.6922	0.69221402	30	E9PRG8	C11orf98	Uncharacterized protein C11orf98	yes	yes	0	1	1	5	0					1	13.167	13.167	3	0.026229	5171	DP1063-10	90.793	69.397			NaN	NaN	NaN	0	0	Median	3957100	0	3957100	2788	30	2642	6515	13679;13680	13680	21	2	9606
TAQEVETYR	0	1	Unmodified	1095.5197	0.51965261	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			14.356	14.356	2	0.00778	5918	DP1063-8	116.05	70.099			NaN	NaN	NaN	0	0	Median	32296000	0	32296000	2789	148	2643	6516	13681	13681		1	9606
TAQEVETYRR	0	2	Unmodified	1251.6208	0.62076364	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			2			13.322	13.322	2;3	0.0024302	4628	DP1063-8	148.52	84.315			NaN	NaN	NaN	0	0	Median	69515000	0	69515000	2790	148	2644	6517;6518	13682;13683	13682		2	9606
TAQGLPGTSNSNSSR	0	1	Unmodified	1475.6964	0.69644778	549	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	1.5	0.5	1	1				14.108	14.108	2	2.9397E-13	5065	DP1063-7	174.23	139.84			NaN	NaN	NaN	0	0	Median	10292000	0	10292000	2791	549	2645	6519;6520	13684;13685;13686;13687;13688	13687		5	9606
TAQIMFQAYGDK	1	0	Oxidation (M)	1387.6442	0.6442012	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				17.7	17.7	2	0.0001542	8221	DP1063-6	122.69	122.69			0.96352	0.98785	5.9203	2	0	Median	569480000	282770000	286720000	2792	355	2646	6521;6522	13689;13690;13691;13692;13693;13694;13695;13696;13697	13692	452	9	9606
TAQIMFQAYGDK	1	0	Unmodified	1371.6493	0.64928657	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.796	18.796	2	9.164E-06	9678	DP1063-6	152.69	136.69			1.0214	1.042	NaN	1	0	Median	139540000	70156000	69382000	2793	355	2646	6523	13698;13699;13700;13701	13700		4	9606
TASEMVLADDNFSTIVAAVEEGR	0	1	Oxidation (M)	2440.1428	0.14278401	143	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	1	0	2	0		1				24.239	24.239	2	1.5734E-17	18613	DP1063-7	141.93	115.95			NaN	NaN	NaN	0	0	Median	0	0	0	2794	143	2647	6524	13702	13702	176	1	9606
TASVLSKDDVAPESGDTTVK	2	0	Unmodified	2019.0008	0.0007944461	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			2			15.978	15.978	2;3	2.0342000000000002E-35	8074	DP1063-8	213.71	161.87			NaN	NaN	NaN	0	0	Median	30103000	0	30103000	2795	75	2648	6525;6526	13703;13704;13705;13706	13706		4	9606
TATQLAVNK	1	0	Unmodified	944.5291	0.52909508	488	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			13.893	13.893	2	0.020973	5355	DP1063-8	72.485	51.538			2.2679	2.2841	NaN	1	0	Median	29944000	8940900	21003000	2796	488	2649	6527	13707	13707		1	9606
TAVAPIER	0	1	Unmodified	855.48142	0.48141661	93;133;132	P05141;Q9H0C2;P12236;P12235	SLC25A5;SLC25A31;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	2.5	1.5	1			1		14.527	14.527	2	0.0010457	5907	DP1063-9	130.22	80.631			2.1246	2.2051	0.39647	2	0	Median	198270000	63713000	134550000	2797	93;133;132	2650	6528;6529	13708;13709;13710;13711;13712;13713;13714;13715	13712		8	9606
TAVCDIPPR	0	1	Unmodified	1027.5121	0.51206481	311;109;373;414	P07437;A6NNZ2;P68371;P04350;Q9BVA1;Q13885;Q3ZCM7	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain	no	no	0	0	0	3.33	0.471			2	1		15.668	15.668	2	0.00036716	6771	DP1063-8	124.98	92.143			2.7122	2.8237	22.702	2	0	Median	270940000	69508000	201430000	2798	109;311;373;414	2651	6530;6531;6532	13716;13717;13718;13719;13720;13721;13722;13723;13724	13717		9	9606
TAVETAVLLLR	0	1	Unmodified	1184.7129	0.71287311	225	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			21.364	21.364	2	0.00027211	14946	DP1063-8	113.62	88.048			1.5837	1.6409	NaN	1	0	Median	20362000	6932500	13430000	2799	225	2652	6533	13725;13726	13725		2	9606
TAVFQEFSHSR	0	1	Unmodified	1307.6258	0.62584901	522	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	2	0		1				16.909	16.909	3	0.0095727	8851	DP1063-7	93.345	54.563			NaN	NaN	NaN	0	0	Median	21344000	0	21344000	2800	522	2653	6534	13727;13728	13727		2	9606
TAVTGSLSENDPLR	0	1	Unmodified	1458.7314	0.7314363	456	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		17.741	17.741	2	4.0151E-14	10200	DP1063-9	208.15	138.34			NaN	NaN	NaN	0	0	Median	24310000	0	24310000	2801	456	2654	6535	13729;13730	13730		2	9606
TAVVVGTITDDVR	0	1	Unmodified	1344.7249	0.72489436	342	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	18.42	18.42	2	6.5052E-23	11575	DP1063-10	208.84	156.36			11.464	8.2684	NaN	1	0	Median	304650000	26315000	278340000	2802	342	2655	6536	13731;13732;13733;13734	13732		4	9606
TAYSGGAEDLER	0	1	Unmodified	1267.5681	0.56805936	573	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		15.653	15.653	2	0.048187	7505	DP1063-9	78.342	39.037			NaN	NaN	NaN	0	0	Median	32694000	0	32694000	2803	573	2656	6537	13735	13735		1	9606
TCTTVAFTQVNSEDK	1	0	Unmodified	1699.7723	0.77231483	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		17.084	17.084	2	2.1068E-24	9345	DP1063-9	215.04	164.93			NaN	NaN	NaN	0	0	Median	19544000	0	19544000	2804	280	2657	6538	13736;13737	13737		2	9606
TCTTVAFTQVNSEDKGALAK	2	0	Unmodified	2140.047	0.047033132	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				2		17.072	17.072	2;3	2.1321E-42	9367	DP1063-9	218.45	170.17			10.993	11.629	NaN	1	0	Median	101030000	8681000	92346000	2805	280	2658	6539;6540	13738;13739;13740;13741;13742;13743	13742		6	9606
TCVADESHAGCEK	1	0	Unmodified	1462.5817	0.58167729	12	CON__P02769			yes	yes	0	0	0	2.6	1.36	3	2	2	2	1	12.745	12.745	2;3	1.7809000000000002E-25	3228	DP1063-7	243.91	243.91		+	NaN	NaN	NaN	0	0	Median	2933599999.9999995	2933599999.9999995	0	2806	12	2659	6541;6542;6543;6544;6545;6546;6547;6548;6549;6550	13744;13745;13746;13747;13748;13749;13750;13751;13752;13753;13754;13755;13756;13757;13758;13759;13760;13761;13762;13763;13764;13765;13766;13767	13754		24	
TCVFEKENDPSVMR	1	1	Oxidation (M)	1726.7655	0.76545532	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	2	2				15.346	15.346	2;3	0.00030029	5339	DP1063-6	140.45	110.12			0.8585	0.90664	5.39	3	0	Median	318410000	167750000	150670000	2807	355	2660	6551;6552;6553;6554	13768;13769;13770;13771;13772;13773;13774;13775;13776;13777;13778	13775	453	11	9606
TCVFEKENDPSVMR	1	1	Unmodified	1710.7705	0.7705407	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.447	16.447	2;3	0.00025113	6707	DP1063-6	143.56	143.56			1.0117	1.0684	NaN	1	0	Median	63871000	33043000	30828000	2808	355	2660	6555;6556	13779;13780;13781	13780		3	9606
TDAAVSFAK	1	0	Acetyl (Protein N-term)	950.47091	0.4709115	93	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	4.5	0.5				1	1	18.889	18.889	1;2	3.5639E-05	12109	DP1063-9	132.76	82.151			3.181	3.2696	NaN	1	0	Median	86399000	21195000	65204000	2809	93	2661	6557;6558	13782;13783	13783		2	9606
TDCDIEDDR	0	1	Unmodified	1137.4244	0.42443159	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.366	14.366	2	9.3736E-15	4092	DP1063-6	170.24	159.02			0.97959	1.0097	NaN	1	0	Median	38703000	17107000	21596000	2810	355	2662	6559	13784;13785;13786;13787	13785		4	9606
TDCDIEDDRLAAMFR	0	2	Oxidation (M)	1842.7876	0.78764732	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.2	0.4	4	1				19.014	19.014	2;3	0.00061876	9318	DP1063-6	91.093	91.093			0.99141	1.0086	4.7613	4	0	Median	734510000	351890000	382630000	2811	355	2663	6560;6561;6562;6563;6564	13788;13789;13790;13791;13792;13793;13794;13795;13796;13797;13798;13799;13800;13801	13789	454	14	9606
TDCDIEDDRLAAMFR	0	2	Unmodified	1826.7927	0.7927327	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					20.464	20.464	2;3	6.342E-06	11899	DP1063-6	136.81	136.81			0.99155	1.0088	4.3791	2	0	Median	210430000	104570000	105860000	2812	355	2663	6565;6566	13802;13803;13804;13805;13806;13807;13808;13809	13808		8	9606
TDCNHIFLNFVPTVIMDPSK	1	0	Oxidation (M)	2363.129	0.12898862	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	3					22.557	22.557	2;3	2.0226999999999998E-67	14313	DP1063-6	254.72	254.72			0.8447	0.86167	6.4339	2	0	Median	220240000	114890000	105360000	2813	355	2664	6567;6568;6569	13810;13811;13812;13813;13814;13815;13816;13817;13818;13819	13817	455	10	9606
TDCNHIFLNFVPTVIMDPSK	1	0	Unmodified	2347.1341	0.134074	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					23.422	23.422	2;3	1.6997E-10	15551	DP1063-6	134.25	87.769			0.87926	0.89693	NaN	1	0	Median	10639000	5350900	5287700	2814	355	2664	6570;6571;6572	13820;13821;13822;13823;13824;13825	13824		6	9606
TDCNHIFLNFVPTVIMDPSKIEESVR	1	1	Oxidation (M)	3076.4998	0.49979215	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.4	0.49	3	2				22.574	22.574	3;4	6.0356E-11	14489	DP1063-6	144.45	121.17			0.79569	0.83317	11.391	2	0	Median	117830000	73335000	44495000	2815	355	2665	6573;6574;6575;6576;6577	13826;13827;13828;13829;13830;13831;13832;13833;13834;13835;13836;13837	13826	455	12	9606
TDFGIFR	0	1	Unmodified	854.42865	0.42865276	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0				1		20.046	20.046	2	0.0013821	13366	DP1063-9	121.68	94.367			1.1248	1.1766	NaN	1	0	Median	63030000	29443000	33587000	2816	524	2666	6578	13838;13839;13840;13841	13838		4	9606
TDITYPAGFMDVISIDK	1	0	Unmodified	1884.9179	0.91791644	281	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		23.595	23.595	2	0.02127	18019	DP1063-9	86.772	50.094			NaN	NaN	NaN	0	0	Median	3676800	0	3676800	2817	281	2667	6579	13842;13843	13842		2	9606
TDPSILGGMIVR	0	1	Oxidation (M)	1273.67	0.67002202	221	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	1	0	5	0					1	18.965	18.965	2	0.044831	12404	DP1063-10	52.278	22.805			1.62	1.1684	NaN	1	0	Median	5088300	1530700	3557500	2818	221	2668	6580	13844	13844		1	9606
TDYNASVSVPDSSGPER	0	1	Unmodified	1779.7911	0.79113602	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.5	0.5			1	1		16.81	16.81	2	1.1263E-12	9126	DP1063-8	182.37	164.56			3.7451	3.8806	NaN	1	0	Median	54816000	10149000	44667000	2819	262	2669	6581;6582	13845;13846;13847;13848;13849;13850	13846		6	9606
TEADAEKTFEEK	2	0	Unmodified	1396.6358	0.63580458	155	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.33	0.471		2	1			14.694	14.694	2;3	1.0952E-53	5863	DP1063-7	246.08	194.13			16.079	16.594	NaN	1	0	Median	194780000	4041500	190730000	2820	155	2670	6583;6584;6585	13851;13852;13853;13854;13855;13856;13857	13852		7	9606
TEAEQQITEVFVLAER	0	1	Unmodified	1861.9422	0.94215736	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				22.815	22.815	2	3.8415E-06	14828	DP1063-6	153.39	109.79			NaN	NaN	NaN	0	0	Median	6591700	0	6591700	2821	211	2671	6586;6587	13858;13859;13860	13858		3	9606
TEDPDLPAFYFDPLINPISHR	0	1	Unmodified	2456.2012	0.20122559	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					23.923	23.923	3	5.6175E-12	16145	DP1063-6	156.73	133			NaN	NaN	NaN	0	0	Median	4590000	0	4590000	2822	431	2672	6588	13861;13862	13862		2	9606
TEIIILATR	0	1	Unmodified	1028.623	0.62299547	164	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		19.4	19.4	2	8.8073E-26	12496	DP1063-9	209.84	175.02			2.9745	3.1114	NaN	1	0	Median	137190000	33878000	103310000	2823	164	2673	6589	13863;13864;13865;13866	13863		4	9606
TEMDWVLK	1	0	Oxidation (M)	1036.4899	0.48993238	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				1		18.289	18.289	2	0.011449	11048	DP1063-9	77.058	59.672			3.3273	3.4199	NaN	1	0	Median	22328000	5734100	16594000	2824	239	2674	6590	13867;13868	13868	295	2	9606
TEMEDLMSSKDDVGK	2	0	2 Oxidation (M)	1715.723	0.72298138	191	P35579	MYH9	Myosin-9	yes	yes	0	2	1	1	0	1					13.971	13.971	3	0.027118	3656	DP1063-6	43.316	32.977			1.057	1.0755	NaN	1	0	Median	5835300	2362300	3473000	2825	191	2675	6591	13869	13869	212;213	1	9606
TENSTSAPAAKPK	2	0	Acetyl (Protein N-term)	1342.6729	0.67285879	108	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	yes	yes	1	0	1	4	0				1		12.962	12.962	2	0.0036879	4018	DP1063-9	117.52	80.329			NaN	NaN	NaN	0	0	Median	4253900	0	4253900	2826	108	2676	6592	13870;13871	13871		2	9606
TEQAISFAK	1	0	Acetyl (Protein N-term)	1035.5237	0.52367535	133	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	4	0				2		19.487	19.487	1;2	0.00016948	12770	DP1063-9	96.331	59.172			2.4509	2.5191	10.149	2	0	Median	35969000	10057000	25912000	2827	133	2677	6593;6594	13872;13873	13873		2	9606
TEWETAAPAVAETPDIK	1	0	Acetyl (Protein N-term)	1869.8996	0.89962384	218	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	0	0	5	0					1	21.907	21.907	2	5.6324E-11	16072	DP1063-10	181.98	181.98			4.1531	2.4638	NaN	1	0	Median	38201000	5543400	32657000	2828	218	2678	6595	13874;13875;13876;13877;13878	13875		5	9606
TFDPYIIIR	0	1	Unmodified	1136.623	0.62299547	368	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	4	0				1		21.253	21.253	2	0.043758	15006	DP1063-9	83.206	47.768			NaN	NaN	NaN	0	0	Median	11117000	0	11117000	2829	368	2679	6596	13879;13880	13879		2	9606
TFEDFVR	0	1	Unmodified	912.43413	0.43413207	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.772	18.772	2	0.00096314	9589	DP1063-6	128.82	96.702			0.95771	0.9615	4.981	2	0	Median	941150000	466440000	474700000	2830	355	2680	6597;6598	13881;13882;13883;13884;13885;13886	13882		6	9606
TFEGHDASVLK	1	0	Unmodified	1202.5932	0.5931519	348	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					15.244	15.244	2	0.025974	5256	DP1063-6	90.15	35.039			NaN	NaN	NaN	0	0	Median	4979700	0	4979700	2831	348	2681	6599	13887	13887		1	9606
TFEVTPIR	0	1	Unmodified	961.52328	0.52328142	384	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					17.848	17.848	2	0.022095	8436	DP1063-6	100.45	78.347			NaN	NaN	NaN	0	0	Median	24345000	0	24345000	2832	384	2682	6600	13888;13889	13889		2	9606
TFLVGER	0	1	Unmodified	820.4443	0.44430282	175	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		17.037	17.037	2	0.01663	9341	DP1063-9	84.244	41.525			1.0616	1.1104	NaN	1	0	Median	16736000	7245800	9490200	2833	175	2683	6601	13890;13891	13891		2	9606
TFQVLGNLYSEGDCTYLK	1	0	Unmodified	2106.9932	0.99320665	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		27.168	27.168	2	1.1278E-72	15767	DP1063-7	280.23	245.33			NaN	NaN	NaN	0	0	Median	139460000	0	139460000	2834	483	2684	6602;6603;6604;6605	13892;13893;13894;13895;13896;13897;13898	13892		7	9606
TFSFAIPLIEK	1	0	Unmodified	1264.7067	0.7067251	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				23.096	23.096	2	0.008611	17176	DP1063-7	112.3	88.265			NaN	NaN	NaN	0	0	Median	26898000	0	26898000	2835	531	2685	6606	13899;13900	13900		2	9606
TFTDCFNCLPIAAIVDEK	1	0	Unmodified	2112.986	0.98601278	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.58	0.494			8	11		28.836	28.836	2;3	1.4629E-05	25001	DP1063-9	117.93	86.784			NaN	NaN	NaN	0	0	Median	85456000	0	85456000	2836	194;264;265	2686	6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620;6621;6622;6623;6624;6625	13901;13902;13903;13904;13905;13906;13907;13908;13909;13910;13911;13912;13913;13914;13915;13916;13917;13918;13919;13920;13921;13922;13923;13924;13925	13924		25	9606
TFYNQAIMSSK	1	0	Oxidation (M)	1304.6071	0.60708741	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		16.681	16.681	2	4.0953E-08	8931	DP1063-8	166.86	145.12			1.1858	1.2064	8.0669	2	0	Median	995600000	458530000	537060000	2837	524	2687	6626;6627	13926;13927;13928;13929;13930;13931;13932;13933	13927	599	8	9606
TFYNQAIMSSK	1	0	Unmodified	1288.6122	0.61217279	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.872	17.872	2	2.8364E-05	10337	DP1063-8	132.01	112.02			0.96757	0.98444	19.71	2	0	Median	308420000	139270000	169140000	2838	524	2687	6628;6629	13934;13935;13936	13935		3	9606
TGAAPIIDVVR	0	1	Unmodified	1110.6397	0.63970816	213	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	5	0					1	18.684	18.684	2	1.1328E-05	11964	DP1063-10	145.46	107.65			6.8159	4.916	NaN	1	0	Median	151770000	22027000	129740000	2839	213	2688	6630	13937;13938;13939;13940	13940		4	9606
TGAIVDVPVGEELLGR	0	1	Unmodified	1623.8832	0.88318591	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.675	21.675	2	2.2569E-06	15350	DP1063-8	158.42	158.42			0.75062	0.78147	1.8917	2	0	Median	64327000	33637000	30691000	2840	170	2689	6631;6632	13941;13942;13943;13944;13945;13946	13941		6	9606
TGISDVFAK	1	0	Unmodified	936.49165	0.49164694	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				18.667	18.667	2	0.01735	11244	DP1063-7	95.815	44.48			NaN	NaN	NaN	0	0	Median	151580000	0	151580000	2841	155	2690	6633	13947	13947		1	9606
TGLAPEFAALGESGSSSSK	1	0	Unmodified	1794.8636	0.86357268	11	CON__P02672			yes	yes	0	0	0	4.5	0.5				1	1	19.98	19.98	2	0.001149	13696	DP1063-10	117.08	79.364		+	NaN	NaN	NaN	0	0	Median	21432000	21432000	0	2842	11	2691	6634;6635	13948;13949;13950	13949		3	
TGLAVTVGQAK	1	0	Unmodified	1043.5975	0.597509	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	0	1					16.194	16.194	2	0.053747	6410	DP1063-6	77.533	77.533			NaN	NaN	NaN	0	0	Median	19185000	0	19185000	2843	365	2692	6636	13951	13951		1	9606
TGLSSEQTVNVLAQILKR	1	1	Unmodified	1956.1004	0.10038933	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3	0			1			22.254	22.254	3	0.0061224	16074	DP1063-8	82.663	39.106			NaN	NaN	NaN	0	0	Median	0	0	0	2844	190	2693	6637	13952	13952		1	9606
TGPAAAQVQVGK	1	0	Unmodified	1125.6142	0.6142217	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				14.57	14.57	2	0.0011554	5692	DP1063-7	138.08	110.07			NaN	NaN	NaN	0	0	Median	41493000	0	41493000	2845	365	2694	6638;6639	13953;13954;13955;13956	13955		4	9606
TGPTVTQVK	1	0	Unmodified	929.5182	0.51819605	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				13.837	13.837	2	0.011031	4730	DP1063-7	107.01	69.449			NaN	NaN	NaN	0	0	Median	54217000	0	54217000	2846	365	2695	6640	13957;13958	13957		2	9606
TGQLFLK	1	0	Unmodified	805.46979	0.46978929	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					17.344	17.344	2	0.05494	7812	DP1063-6	86.512	47.694			NaN	NaN	NaN	0	0	Median	4975500	0	4975500	2847	431	2696	6641	13959	13959		1	9606
TGTAYTFFTPNNIK	1	0	Unmodified	1573.7777	0.77765821	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.229	20.229	2	6.2056E-05	13473	DP1063-8	152.54	113.58			NaN	NaN	NaN	0	0	Median	0	0	0	2848	148	2697	6642	13960	13960		1	9606
TGTITTFEHAHNMR	0	1	Oxidation (M)	1630.7522	0.75218852	137	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	2	0		1				14.21	14.21	3	0.0097392	5197	DP1063-7	51.359	51.359			0.83846	0.87021	NaN	1	0	Median	19296000	9731100	9565000	2849	137	2698	6643	13961	13961	169	1	9606
TGTVSVVCLVNDFYPK	1	0	Unmodified	1797.8971	0.89712142	22	CON__Q05B55			yes	yes	0	0	0	5	0					1	23.637	23.637	2	0.022771	18151	DP1063-10	111.94	67.393		+	NaN	NaN	NaN	0	0	Median	2354900	2354900	0	2850	22	2699	6644	13962	13962		1	
TGVCICFYQHKEEYQLVQVEQK	2	0	Unmodified	2785.3204	0.32037122	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				18.979	18.979	3	0.031596	11735	DP1063-7	63.447	46.185			NaN	NaN	NaN	0	0	Median	13872000	0	13872000	2851	531	2700	6645	13963	13963		1	9606
TGVHHYSGNNIELGTACGK	1	0	Unmodified	2013.9327	0.93267208	293	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					3	14.701	14.701	2;3;4	5.6241E-24	6989	DP1063-10	196.97	154.5			12.225	7.2522	NaN	1	0	Median	98451000	6385300	92066000	2852	293	2701	6646;6647;6648	13964;13965;13966;13967;13968;13969;13970	13969		7	9606
THINIVVIGHVDSGK	1	0	Unmodified	1587.8733	0.87328993	309	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	0				2		16.847	16.847	2;3	0.00067376	9042	DP1063-9	108.14	108.14			1.4848	1.5261	NaN	1	0	Median	45899000	17455000	28445000	2853	309	2702	6649;6650	13971;13972;13973;13974	13971		4	9606
THNLEPYFESFINNLR	0	1	Unmodified	1992.9694	0.96937516	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.41	1	1	1	1	1	23.03	23.03	2;3	5.2233000000000005E-33	17102	DP1063-7	210.67	176.18		+	NaN	NaN	NaN	0	0	Median	123420000	123420000	0	2854	88	2703	6651;6652;6653;6654;6655	13975;13976;13977;13978;13979;13980;13981;13982;13983;13984	13979		10	9606
THNLEPYFESFINNLRR	0	2	Unmodified	2149.0705	0.070486187	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.2	1.17	2	1	1	1		22.043	22.043	3;4	6.326E-05	15826	DP1063-8	138.39	92.232		+	NaN	NaN	NaN	0	0	Median	35694000	35694000	0	2855	88	2704	6656;6657;6658;6659;6660	13985;13986;13987;13988;13989;13990;13991;13992	13991		8	9606
THSDQFLVAFK	1	0	Unmodified	1291.6561	0.65608651	192	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		18.504	18.504	2	0.00031892	11342	DP1063-9	105.4	71.652			2.371	2.437	NaN	1	0	Median	28216000	8643400	19572000	2856	192	2705	6661	13993;13994	13993		2	9606
TIAECLADELINAAK	1	0	Unmodified	1630.8236	0.82362212	218	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					2	24.176	24.176	2;3	1.376E-33	18763	DP1063-10	223.87	191.54			4.7569	2.8219	17.074	2	0	Median	60963000	10579000	50384000	2857	218	2706	6662;6663	13995;13996;13997;13998;13999;14000	13998		6	9606
TIAFLLPMFR	0	1	Oxidation (M)	1223.6737	0.67365083	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	1	0	1.5	0.5	1	1				23.174	23.174	2	0.050553	17193	DP1063-7	86.011	51.479			NaN	NaN	NaN	0	0	Median	17722000	0	17722000	2858	436	2707	6664;6665	14001;14002;14003	14003		3	9606
TIAFLLPMFR	0	1	Unmodified	1207.6787	0.67873621	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				24.745	24.745	2	0.006017	19245	DP1063-7	128.1	99.013			NaN	NaN	NaN	0	0	Median	2517000	0	2517000	2859	436	2707	6666	14004;14005	14005		2	9606
TIAPALVSK	1	0	Unmodified	898.54877	0.54876789	104	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		16.309	16.309	2	0.013139	8383	DP1063-9	78.113	42.619			0.6007	0.61742	NaN	1	0	Median	17078000	9181900	7896500	2860	104	2708	6667	14006	14006		1	9606
TIAPQNAPR	0	1	Unmodified	966.52468	0.52467841	544	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	0	1					13.724	13.724	2	0.006225	3317	DP1063-6	86.472	57.555			2.0276	2.1251	NaN	1	0	Median	7861700	2007800	5853900	2861	544	2709	6668	14007	14007		1	9606
TIAPTGHLHTVEFHQQR	0	1	Unmodified	1971.0075	0.0074919995	475	Q96FX7	TRMT61A	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	yes	yes	0	0	0	4	0				1		15.138	15.138	3	0.010134	6747	DP1063-9	85.28	37.641			NaN	NaN	NaN	0	0	Median	3852900	0	3852900	2862	475	2710	6669	14008	14008		1	9606
TIAQDYGVLK	1	0	Unmodified	1106.5972	0.59717465	341	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	18.01	18.01	2	0.00026266	11054	DP1063-10	113.71	113.71			1.8703	1.1095	NaN	1	0	Median	34772000	10589000	24183000	2863	341	2711	6670	14009;14010	14010		2	9606
TIAQGNLSNTDVQAAK	1	0	Unmodified	1629.8322	0.83221298	162	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		15.957	15.957	2	2.5714E-16	7914	DP1063-9	189.24	189.24			1.1403	1.1721	NaN	1	0	Median	25564000	12263000	13301000	2864	162	2712	6671	14011;14012;14013;14014;14015	14013		5	9606
TIGGGDDSFNTFFSETGAGK	1	0	Unmodified	2006.8858	0.88576469	310;434;492	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.2	0.4			4	1		24.101	24.101	2	3.7115E-81	15577	DP1063-9	266.77	266.77			3.4483	3.5085	7.7663	2	0	Median	879830000	201000000	678840000	2865	310;434;492	2713	6672;6673;6674;6675;6676	14016;14017;14018;14019;14020;14021;14022;14023;14024;14025;14026	14025		11	9606
TIGISVDPR	0	1	Unmodified	956.5291	0.52909508	174	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4.5	0.5				1	1	17.312	17.312	2	0.015844	10081	DP1063-10	76.17	48.287			8.47	7.3571	27.393	2	0	Median	168460000	19908000	148550000	2866	174	2714	6677;6678	14027;14028	14027		2	9606
TILQGNYIQYSGDPLQDFTLMR	0	1	Oxidation (M)	2588.2581	0.25808854	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				23.432	23.432	2	1.0337E-06	17588	DP1063-7	140.49	92.864			NaN	NaN	NaN	0	0	Median	11498000	0	11498000	2867	338	2715	6679	14029;14030	14029	404	2	9606
TILQHLSEAWR	0	1	Unmodified	1352.7201	0.72008375	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					19.965	19.965	3	0.0086279	11212	DP1063-6	123.01	73.507			NaN	NaN	NaN	0	0	Median	0	0	0	2868	431	2716	6680	14031	14031		1	9606
TINLYPLTNYTFGTK	1	0	Unmodified	1744.9036	0.903587	55	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	5	0					1	22.361	22.361	2	0.0018155	16766	DP1063-10	122.46	76.053			NaN	NaN	NaN	0	0	Median	2516300	0	2516300	2869	55	2717	6681	14032;14033;14034	14034		3	9606
TIPLTDNTVIEEHLGK	1	0	Unmodified	1778.9414	0.94142907	429	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	4	0				1		19.016	19.016	3	0.053984	12018	DP1063-9	65.467	34.252			NaN	NaN	NaN	0	0	Median	11578000	0	11578000	2870	429	2718	6682	14035	14035		1	9606
TIQFVDWCPTGFK	1	0	Unmodified	1597.7599	0.75989966	434;492	Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	4	0.816			1	1	1	22.211	22.211	2	2.9272E-10	16190	DP1063-9	182.28	137.44			NaN	NaN	NaN	0	0	Median	86583000	0	86583000	2871	434;492	2719	6683;6684;6685	14036;14037;14038;14039;14040	14040		5	9606
TIQGHLQSENFK	1	0	Unmodified	1400.7048	0.70482762	43	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				15.337	15.337	2	0.044139	6809	DP1063-7	79.23	42.896			NaN	NaN	NaN	0	0	Median	16885000	0	16885000	2872	43	2720	6686	14041	14041		1	9606
TIQQTLILANILEACEHMTSDQR	0	1	Oxidation (M)	2700.3211	0.3210995	529	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	1	0	4	0				1		22.619	22.619	3	0.018439	16764	DP1063-9	62.847	44.599			NaN	NaN	NaN	0	0	Median	5605600	0	5605600	2873	529	2721	6687	14042;14043	14043	601	2	9606
TIQTPIGSTWNTQR	0	1	Unmodified	1601.8162	0.81616898	504	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	2	0		1				18.587	18.587	2	2.7999E-05	11234	DP1063-7	151.98	93.606			NaN	NaN	NaN	0	0	Median	27056000	0	27056000	2874	504	2722	6688	14044;14045	14045		2	9606
TIQVENSHLILTGAGALNK	1	0	Unmodified	1978.0847	0.084739268	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	2	2	2			18.855	18.855	2;3	1.0682000000000001E-108	9749	DP1063-6	292.76	255.44			1.0112	1.0367	7.475	6	0	Median	1769599999.9999998	850100000	919530000	2875	355	2723	6689;6690;6691;6692;6693;6694	14046;14047;14048;14049;14050;14051;14052;14053;14054;14055;14056;14057;14058;14059;14060;14061;14062;14063;14064;14065;14066;14067;14068;14069	14052		24	9606
TITLEVEPSDTIENVK	1	0	Unmodified	1786.92	0.92002493	300	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3.33	1.7	1			1	1	19.774	19.774	2	1.4936E-86	13379	DP1063-10	273.44	273.44			2.9373	2.285	94.711	2	0	Median	103340000	23042000	80296000	2876	300	2724	6695;6696;6697	14070;14071;14072;14073;14074;14075;14076;14077	14073		8	9606
TIVEELLADSEFRR	0	2	Unmodified	1676.8733	0.87334951	421	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	1	2	0		2				22.352	22.352	2;3	6.4041E-13	16195	DP1063-7	198.97	150.83			NaN	NaN	NaN	0	0	Median	19960000	0	19960000	2877	421	2725	6698;6699	14078;14079;14080;14081;14082	14078		5	9606
TIVITSHPGQIVK	1	0	Unmodified	1391.8136	0.81364979	183	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				1		16.27	16.27	2	0.0018443	8336	DP1063-9	130.01	98.575			NaN	NaN	NaN	0	0	Median	14486000	0	14486000	2878	183	2726	6700	14083;14084	14084		2	9606
TKDHTLVQTIAR	1	1	Unmodified	1381.7678	0.76776223	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.75	0.829		2	1	1		14.548	14.548	2;3	1.4947E-06	5654	DP1063-7	161.87	137.17			NaN	NaN	NaN	0	0	Median	233470000	0	233470000	2879	381	2727	6701;6702;6703;6704	14085;14086;14087;14088;14089;14090;14091	14086		7	9606
TKEAVLLLK	2	0	Unmodified	1013.6485	0.64848194	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				1		16.297	16.297	2	0.0099322	8387	DP1063-9	92.051	39.569			6.825	7.2198	NaN	1	0	Median	29631000	3392600	26239000	2880	193	2728	6705	14092;14093	14093		2	9606
TKEEVNEWFTK	2	0	Unmodified	1409.6827	0.68269519	556	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	4	0				1		17.479	17.479	3	0.044138	9918	DP1063-9	63.602	32.124			NaN	NaN	NaN	0	0	Median	10311000	0	10311000	2881	556	2729	6706	14094	14094		1	9606
TKMPLQKHMSK	3	0	2 Oxidation (M)	1359.7003	0.70027629	588				yes	yes	0	2	2	3	0			1			14.127	14.127	2	0.022951	5649	DP1063-8	50.473	23.684	+		0.49753	0.51966	NaN	1	0	Median	20691000	14026000	6665400	2882	588	2730	6707	14095	14095	641;642	1	9606
TKPIVKPQTSPEYGQGINPISR	2	1	Unmodified	2409.3016	0.30160833	82	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	2	3	0			1			16.36	16.36	3	0.03163	8547	DP1063-8	67.785	45.551			NaN	NaN	NaN	0	0	Median	0	0	0	2883	82	2731	6708	14096	14096		1	9606
TKTPGPGAQSALR	1	1	Unmodified	1282.6993	0.69934831	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	13.551	13.551	3	0.00077034	5458	DP1063-10	92.151	54.807			4.1683	4.1137	NaN	1	0	Median	21881000	3828200	18052000	2884	271	2732	6709	14097;14098;14099;14100	14099		4	9606
TLAFLVPVLEALYR	0	1	Unmodified	1603.9338	0.93376492	360	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	2	0		1				27.177	27.177	2	0.0030102	22024	DP1063-7	116.23	80.523			NaN	NaN	NaN	0	0	Median	1522200	0	1522200	2885	360	2733	6710	14101;14102	14101		2	9606
TLATDILMGVLK	1	0	Oxidation (M)	1289.7265	0.72647426	48	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2	0		1				23.9	23.9	2	0.020654	18174	DP1063-7	98.943	65.198			NaN	NaN	NaN	0	0	Median	14762000	0	14762000	2886	48	2734	6711	14103;14104	14103	45	2	9606
TLFNELR	0	1	Unmodified	891.48142	0.48141661	249	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	5	0					1	18.798	18.798	2	0.041784	12096	DP1063-10	64.757	10.146			1.4801	1.0675	NaN	1	0	Median	14368000	4951900	9416500	2887	249	2735	6712	14105	14105		1	9606
TLFVLNVPPYCTEESLSR	0	1	Unmodified	2124.0561	0.056141256	574	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		22.484	22.484	2	1.8022E-15	16527	DP1063-9	175.21	135.34			NaN	NaN	NaN	0	0	Median	5354500	0	5354500	2888	574	2736	6713	14106;14107	14107		2	9606
TLGECGFTSQTARPQAPATVGLAFR	0	2	Unmodified	2635.3177	0.3176691	401	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	1	5	0					1	19.518	19.518	3	0.00011532	13098	DP1063-10	97.488	74.852			NaN	NaN	NaN	0	0	Median	17057000	0	17057000	2889	401	2737	6714	14108;14109	14108		2	9606
TLGETSANAETEQNK	1	0	Unmodified	1591.7326	0.73255851	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	0	3					14.125	14.125	2	0.00051978	3813	DP1063-6	124.12	80.326			NaN	NaN	NaN	0	0	Median	0	0	0	2890	426	2738	6715;6716;6717	14110;14111;14112	14110		3	9606
TLGETSANAETEQNKK	2	0	Unmodified	1719.8275	0.82752153	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	1	1.5	0.5	1	1				13.165	13.165	3	4.0797E-06	2710	DP1063-6	149.3	121.02			NaN	NaN	NaN	0	0	Median	8765700	0	8765700	2891	426	2739	6718;6719	14113;14114;14115	14114		3	9606
TLGSSDTQQLR	0	1	Unmodified	1204.6048	0.60477922	494	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	2	0		1				14.962	14.962	2	0.003885	6274	DP1063-7	133.13	94.831			NaN	NaN	NaN	0	0	Median	27935000	0	27935000	2892	494	2740	6720	14116;14117	14116		2	9606
TLLDIDNTR	0	1	Unmodified	1059.556	0.55603811	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3.5	1.12		1	1	1	1	18.39	18.39	2	0.0061491	11137	DP1063-9	122.19	42.59		+	NaN	NaN	NaN	0	0	Median	126830000	126830000	0	2893	19	2741	6721;6722;6723;6724	14118;14119;14120;14121;14122;14123	14122		6	9606
TLLDQHGQYPIWMNQR	0	1	Oxidation (M)	2014.9683	0.9683293	496	Q9BRT6	LLPH	Protein LLP homolog	yes	yes	0	1	0	5	0					1	19.053	19.053	3	0.0072144	12486	DP1063-10	81.311	48.495			NaN	NaN	NaN	0	0	Median	9570600	0	9570600	2894	496	2742	6725	14124	14124	576	1	9606
TLLVADPR	0	1	Unmodified	883.51272	0.51271674	269	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	16.971	16.971	2	0.046969	9678	DP1063-10	63.565	9.5972			3.4338	2.4766	NaN	1	0	Median	92829000	20040000	72789000	2895	269	2743	6726	14125	14125		1	9606
TLMNLGGLAVAR	0	1	Oxidation (M)	1230.6754	0.67544174	196	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	18.766	18.766	2	5.801E-05	12014	DP1063-10	136.57	136.57			10.096	7.2821	NaN	1	0	Median	30020000	2723800	27296000	2896	196	2744	6727	14126;14127	14127	221	2	9606
TLNDMRQEYEQLIAK	1	1	Oxidation (M)	1866.9146	0.9145624	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	3	0			1			18.274	18.274	2	0.042798	10911	DP1063-8	89.629	55.759		+	NaN	NaN	NaN	0	0	Median	20660000	20660000	0	2897	19	2745	6728	14128	14128		1	9606
TLRDPSLPLLELQDIMTSVSGR	0	2	Oxidation (M)	2456.2945	0.29447405	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.06	0.242	15	1				26.581	26.581	2;3	8.1903E-17	14524	DP1063-6	181.81	181.81			0.78606	0.79625	12.151	10	0	Median	445010000	237490000	207520000	2898	355	2746	6729;6730;6731;6732;6733;6734;6735;6736;6737;6738;6739;6740;6741;6742;6743;6744	14129;14130;14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154;14155;14156;14157;14158;14159;14160;14161;14162;14163;14164	14136	415	35	9606
TLSDDLDEAAKEFQEK	2	0	Unmodified	1837.8582	0.85815295	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	2	0		2				21.277	21.277	2;3	0.00028651	14837	DP1063-7	130.95	102.4			NaN	NaN	NaN	0	0	Median	34873000	0	34873000	2899	514	2747	6745;6746	14165;14166;14167	14166		3	9606
TLSDYNIQK	1	0	Unmodified	1080.5451	0.54513908	300	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	4.5	0.5				1	1	16.093	16.093	2	0.0008504	8626	DP1063-10	109.01	76.658			2.5148	1.9637	76.264	2	0	Median	73864000	24853000	49010000	2900	300	2748	6747;6748	14168;14169;14170;14171;14172;14173	14170		6	9606
TLSYLLPAIVHINHQPFLER	0	1	Unmodified	2360.3005	0.30048612	148	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			2			21.589	21.589	3;4	4.0876E-36	15281	DP1063-8	210.57	173.14			NaN	NaN	NaN	0	0	Median	59113000	0	59113000	2901	148	2749	6749;6750	14174;14175;14176	14175		3	9606
TLTAEEAEEEWERR	0	2	Unmodified	1747.8013	0.80130678	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3	0			1			18.342	18.342	3	1.3848E-09	10986	DP1063-8	170.04	126.05			NaN	NaN	NaN	0	0	Median	30922000	0	30922000	2902	190	2750	6751	14177;14178;14179	14178		3	9606
TLTDEDEADQGGWLAAFWK	1	0	Unmodified	2151.9749	0.97491405	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				25.003	25.003	2	0.00010289	19656	DP1063-7	135.81	94.572			NaN	NaN	NaN	0	0	Median	5874100	0	5874100	2903	514	2751	6752	14180	14180		1	9606
TLTELILDAQEHVK	1	0	Unmodified	1608.8723	0.87228688	146	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				21.236	21.236	3	0.0064788	14758	DP1063-7	92.151	44.909			NaN	NaN	NaN	0	0	Median	10170000	0	10170000	2904	146	2752	6753	14181;14182	14181		2	9606
TLTQGGVTYR	0	1	Unmodified	1094.572	0.57202253	370	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		15.392	15.392	2	2.3793E-05	7108	DP1063-9	133.13	107.33			0.86391	0.90368	NaN	1	0	Median	49248000	27911000	21337000	2905	370	2753	6754	14183;14184;14185;14186	14183		4	9606
TLVLSNLSYSATEETLQEVFEK	1	0	Unmodified	2500.2585	0.2584657	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.33	0.471		2	1			24.863	24.863	2;3	1.7371E-260	19264	DP1063-8	378.79	378.79			14.868	15.32	31.883	3	0	Median	210090000	13078000	197010000	2906	155	2754	6755;6756;6757	14187;14188;14189;14190;14191;14192;14193;14194;14195;14196	14194		10	9606
TMELNVGNEASFHGQER	0	1	Oxidation (M)	1933.8588	0.85883843	426	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	1	0	1	0	1					16.188	16.188	3	0.011179	6450	DP1063-6	78.228	44.036			NaN	NaN	NaN	0	0	Median	8769000	0	8769000	2907	426	2755	6758	14197;14198	14198	526	2	9606
TNAENEFVTIK	1	0	Unmodified	1264.6299	0.62993134	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0.816	1	1	1			17.738	17.738	2	0.00069983	10118	DP1063-8	145.99	90.457		+	NaN	NaN	NaN	0	0	Median	107420000	107420000	0	2908	88	2756	6759;6760;6761	14199;14200;14201;14202;14203;14204	14203		6	9606
TNAENEFVTIKK	2	0	Unmodified	1392.7249	0.72489436	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3	1.53	2		1	2	1	15.898	15.898	2;3	2.7502E-06	7867	DP1063-8	181.53	130.25		+	NaN	NaN	NaN	0	0	Median	146090000	146090000	0	2909	88	2757	6762;6763;6764;6765;6766;6767	14205;14206;14207;14208;14209;14210;14211;14212;14213;14214	14211		10	9606
TNCCESSEQIKR	1	1	Unmodified	1510.6504	0.65042556	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	1	1	0	1					12.684	12.684	3	0.00055448	2162	DP1063-6	136.5	112			NaN	NaN	NaN	0	0	Median	3912500	0	3912500	2910	73	2758	6768	14215;14216	14216		2	9606
TNIIPVLEDAR	0	1	Unmodified	1239.6823	0.68230126	3	A6NHQ2	FBLL1	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	yes	yes	0	0	0	4	0				1		19.755	19.755	2	0.00088512	12994	DP1063-9	143.4	0			NaN	NaN	NaN	0	0	Median	46026000	0	46026000	2911	3	2759	6769	14217;14218	14218		2	9606
TNLLLQAHLSR	0	1	Unmodified	1264.7252	0.72516913	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	2					17.766	17.766	2;3	0.010776	8355	DP1063-6	91.123	24.528			NaN	NaN	NaN	0	0	Median	15894000	0	15894000	2912	71	2760	6770;6771	14219;14220;14221	14220		3	9606
TNNVSEHEDTDKYR	1	1	Unmodified	1706.7496	0.74960556	242	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	2	0		1				12.859	12.859	3	0.0007065	3520	DP1063-7	122.66	105.53			2.6535	2.7785	NaN	1	0	Median	8467100	3083400	5383700	2913	242	2761	6772	14222;14223	14223		2	9606
TNSTFNQVVLKR	1	1	Unmodified	1405.7678	0.76776222	342	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					1	16.248	16.248	3	0.00089699	8809	DP1063-10	132.32	96.002			NaN	NaN	NaN	0	0	Median	51219000	0	51219000	2914	342	2762	6773	14224;14225	14224		2	9606
TNVVTMPTAHPR	0	1	Oxidation (M)	1338.6714	0.671419	365	Q13428	TCOF1	Treacle protein	yes	yes	0	1	0	1	0	2					13.435	13.435	2;3	0.0037103	2942	DP1063-6	96.745	44.982			NaN	NaN	NaN	0	0	Median	47922000	0	47922000	2915	365	2763	6774;6775	14226;14227;14228;14229	14227	466	4	9606
TNYNDRYDEIR	0	2	Unmodified	1457.6535	0.65352033	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		15.279	15.279	3	0.0024601	6938	DP1063-9	77.744	77.744			13.702	13.902	NaN	1	0	Median	104100000	7498900	96605000	2916	280	2764	6776	14230;14231	14230		2	9606
TPALVFEHVNNTDFK	1	0	Unmodified	1730.8628	0.86278482	312	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	4	0				2		18.757	18.757	2;3	1.7309E-20	11658	DP1063-9	212.68	170.47			NaN	NaN	NaN	0	0	Median	40415000	0	40415000	2917	312	2765	6777;6778	14232;14233;14234;14235	14235		4	9606
TPANEKVEIQK	2	0	Unmodified	1255.6772	0.67721588	75	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			13.399	13.399	2	1.3865E-05	4678	DP1063-8	193.83	133.9			NaN	NaN	NaN	0	0	Median	11309000	0	11309000	2918	75	2766	6779	14236;14237	14236		2	9606
TPGFSVQSISDFEK	1	0	Unmodified	1540.7409	0.74093835	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	2	0		1				20.79	20.79	2	0.0019286	14192	DP1063-7	123.95	72.503			NaN	NaN	NaN	0	0	Median	16989000	0	16989000	2919	543	2767	6780	14238;14239	14238		2	9606
TPGPGAQSALR	0	1	Unmodified	1053.5567	0.55670682	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	14.514	14.514	2	0.00022989	6664	DP1063-10	108.57	60.701			3.9365	2.8392	NaN	1	0	Median	129390000	26409000	102980000	2920	271	2768	6781	14240;14241;14242;14243	14242		4	9606
TPHVLVLGSGVYR	0	1	Unmodified	1396.7827	0.78268401	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					18.049	18.049	3	0.00069648	8727	DP1063-6	101.39	101.39			2.4131	2.5185	NaN	1	0	Median	14027000	4850200	9176500	2921	179	2769	6782	14244;14245	14244		2	9606
TPIVGQPSIPGGPVR	0	1	Unmodified	1473.8304	0.83036248	15	CON__P12763			yes	yes	0	0	0	4	1			1		1	18.242	18.242	2	9.2579E-14	10865	DP1063-8	181.66	134.44		+	NaN	NaN	NaN	0	0	Median	109840000	109840000	0	2922	15	2770	6783;6784	14246;14247;14248;14249	14249		4	9606
TPKEEAQSLEDLAGFK	2	0	Unmodified	1761.8785	0.87849447	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	1	0	1					19.845	19.845	3	0.021489	11131	DP1063-6	75.877	50.287			NaN	NaN	NaN	0	0	Median	12287000	0	12287000	2923	211	2771	6785	14250	14250		1	9606
TPKGPSSVEDIK	2	0	Unmodified	1256.6612	0.66123147	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		14.461	14.461	3	0.0048459	5865	DP1063-9	99.669	70.712			NaN	NaN	NaN	0	0	Median	20669000	0	20669000	2924	105	2772	6786	14251;14252	14252		2	9606
TPLEQEIFNLLHK	1	0	Unmodified	1580.8562	0.85624288	504	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	3	1		1		1		23.173	23.173	3	1.325E-11	17235	DP1063-7	195.72	162.5			NaN	NaN	NaN	0	0	Median	27604000	0	27604000	2925	504	2773	6787;6788	14253;14254;14255	14253		3	9606
TPPQLEALQELHPYMEGAQLR	0	1	Oxidation (M)	2436.2107	0.21074442	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	1	0	1	0	1					20.345	20.345	3	0.011482	11752	DP1063-6	73.057	49.33			NaN	NaN	NaN	0	0	Median	10772000	0	10772000	2926	57	2774	6789	14256	14256	47	1	9606
TPTSGQSVSTCSSK	1	0	Unmodified	1425.6406	0.64057238	413	Q32NC0	C18orf21	UPF0711 protein C18orf21	yes	yes	0	0	0	4	0				1		12.736	12.736	2	0.0050992	3793	DP1063-9	107.85	82.461			NaN	NaN	NaN	0	0	Median	2781500	0	2781500	2927	413	2775	6790	14257	14257		1	9606
TPTSSPASSPLVAK	1	0	Unmodified	1341.714	0.71399532	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1		1		1		15.593	15.593	2	1.5872E-11	7081	DP1063-7	191.52	101.63			NaN	NaN	NaN	0	0	Median	87528000	0	87528000	2928	381	2776	6791;6792	14258;14259;14260;14261	14259		4	9606
TPVEEVPAAIAPFQGR	0	1	Unmodified	1680.8835	0.88352026	402	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					20.272	20.272	2	1.0749E-05	11637	DP1063-6	149.49	108.88			NaN	NaN	NaN	0	0	Median	6266500	0	6266500	2929	402	2777	6793	14262;14263	14262		2	9606
TPVEPEVAIHR	0	1	Unmodified	1246.667	0.66698555	253	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					1	15.616	15.616	3	0.00013231	8053	DP1063-10	100.69	100.69			3.208	2.3138	NaN	1	0	Median	78152000	23166000	54986000	2930	253	2778	6794	14264	14264		1	9606
TPVKEQPQLTSTCHIAISNSENLLGK	2	0	Unmodified	2864.4702	0.47020658	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				18.264	18.264	3	1.0202E-08	9015	DP1063-6	131.26	103.37			NaN	NaN	NaN	0	0	Median	29051000	0	29051000	2931	211	2779	6795;6796	14265;14266	14265		2	9606
TPVQYSQQQNSPQK	1	0	Unmodified	1631.7903	0.79034816	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		13.942	13.942	2	5.3848E-132	4846	DP1063-7	350.4	319.6			NaN	NaN	NaN	0	0	Median	71998000	0	71998000	2932	211	2780	6797;6798;6799;6800	14267;14268;14269;14270;14271;14272;14273;14274;14275;14276	14271		10	9606
TQASSSFQDSSQPAGK	1	0	Unmodified	1624.7329	0.73289286	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	3	0.816		1	1	1		14.091	14.091	2	8.1108E-14	5064	DP1063-7	177.83	160.09			NaN	NaN	NaN	0	0	Median	29940000	0	29940000	2933	212	2781	6801;6802;6803	14277;14278;14279;14280;14281;14282	14277		6	9606
TQLQLDER	0	1	Unmodified	1001.5142	0.5141733	241	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		15.726	15.726	2	0.0030297	7523	DP1063-9	114.5	43.155			2.173	2.2731	NaN	1	0	Median	29810000	9058500	20751000	2934	241	2782	6804	14283;14284;14285	14283		3	9606
TQLYEYLQNR	0	1	Unmodified	1326.6568	0.65681479	571	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			19.11	19.11	2	0.008133	12040	DP1063-8	119.21	64.147			NaN	NaN	NaN	0	0	Median	19997000	0	19997000	2935	571	2783	6805	14286	14286		1	9606
TQPMTAQAASYR	0	1	Oxidation (M)	1339.619	0.61904908	480	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	1	0	2	0		1				13.989	13.989	2	0.03796	4903	DP1063-7	54.784	43.62			0.98411	1.0195	NaN	1	0	Median	9695200	4155200	5540000	2936	480	2784	6806	14287	14287		1	9606
TQPSSGVDSAVGTLPATSPQSTSVQAK	1	0	Unmodified	2600.293	0.29295372	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	0	2					17.686	17.686	2;3	1.2013E-26	8240	DP1063-6	173.49	144.85			NaN	NaN	NaN	0	0	Median	25515000	0	25515000	2937	365	2785	6807;6808	14288;14289;14290;14291;14292	14289		5	9606
TQQAAQANITLQEQIEAIHK	1	0	Unmodified	2234.1655	0.16550878	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				18.75	18.75	3	4.2656999999999995E-22	11378	DP1063-7	186.74	186.74			0.78624	0.81016	NaN	1	0	Median	60333000	32378000	27955000	2938	406	2786	6809	14293;14294	14293		2	9606
TQSSASLAASYAAQQHPQAAASYR	0	1	Unmodified	2464.1731	0.17311336	480	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	1		1		1		16.917	16.917	3	1.2031E-07	9124	DP1063-9	127.54	100.32			0.84986	0.88008	NaN	1	0	Median	34321000	22264000	12057000	2939	480	2787	6810;6811	14295;14296;14297	14297		3	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Oxidation (M)	2783.2353	0.23532096	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	1		1		1		20.184	20.184	3	1.0177E-10	13408	DP1063-7	127.3	120.9			0.9241	0.95102	5.3258	2	0	Median	124300000	59776000	64528000	2940	483	2788	6812;6813	14298;14299;14300;14301;14302;14303;14304	14301	563	7	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Unmodified	2767.2404	0.24040634	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				21.008	21.008	3	3.3099E-10	14466	DP1063-7	125.39	125.39			0.80585	0.83037	NaN	1	0	Median	36941000	18989000	17951000	2941	483	2788	6814	14305	14305		1	9606
TSAAQAIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIR	1	1	Oxidation (M)	4359.1126	0.11263364	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	0		1				22.592	22.592	4	1.1787000000000002E-25	16541	DP1063-7	109.62	102.04			0.75614	0.79176	NaN	1	0	Median	64295000	37429000	26865000	2942	483	2789	6815	14306;14307;14308;14309	14308	563	4	9606
TSATWLALSR	0	1	Unmodified	1104.5928	0.59275797	92	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				19.576	19.576	2	0.009567	12554	DP1063-7	112.11	58.139			NaN	NaN	NaN	0	0	Median	13671000	0	13671000	2943	92	2790	6816	14310;14311	14310		2	9606
TSDQIHFFFAK	1	0	Unmodified	1339.6561	0.65608651	21	CON__P41361;P01008	SERPINC1	Antithrombin-III	yes	no	0	0	0	3	0			1			19.676	19.676	3	0.0045928	12798	DP1063-8	108.43	62.43		+	NaN	NaN	NaN	0	0	Median	16671000	16671000	0	2944	21	2791	6817	14312;14313	14312		2	9606
TSFFQALGITTK	1	0	Unmodified	1312.7027	0.70270235	98	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		22.627	22.627	2	2.3353E-10	16677	DP1063-9	178.84	178.84			8.5814	8.8202	NaN	1	0	Median	107720000	10698000	97020000	2945	98	2792	6818	14314;14315;14316;14317	14314		4	9606
TSFHALTSILK	1	0	Unmodified	1216.6816	0.68157298	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				2		18.968	18.968	2;3	0.0006138	11954	DP1063-9	84.817	46.731			3.2268	3.3166	8.3015	2	0	Median	19674000	5577700	14096000	2946	337	2793	6819;6820	14318;14319;14320	14319		3	9606
TSIAIDTIINQK	1	0	Unmodified	1315.7347	0.73473076	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			19.635	19.635	2	9.9594E-05	12736	DP1063-8	132.88	132.88			1.4072	1.4172	NaN	1	0	Median	29277000	13343000	15934000	2947	170	2794	6821	14321;14322	14322		2	9606
TSIIEAQYLR	0	1	Unmodified	1192.6452	0.64518747	382	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					18.935	18.935	2	0.0074658	9854	DP1063-6	122.52	81.068			NaN	NaN	NaN	0	0	Median	6051400	0	6051400	2948	382	2795	6822	14323;14324	14324		2	9606
TSLYSEDDCK	1	0	Unmodified	1216.4918	0.49178288	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.024	15.024	2	0.0014625	4945	DP1063-6	92.051	76.389			0.93715	0.95598	NaN	1	0	Median	8019200	4176100	3843000	2949	38	2796	6823	14325;14326;14327;14328	14325		4	9606
TSNEVQYDQR	0	1	Unmodified	1238.5527	0.55274365	367	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3	0			1			13.853	13.853	2	1.1809E-13	5254	DP1063-8	234.47	188.34			NaN	NaN	NaN	0	0	Median	19081000	0	19081000	2950	367	2797	6824	14329;14330	14329		2	9606
TSPEMDIQNPDDGAR	0	1	Oxidation (M)	1660.6999	0.69987817	211	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1	0	1					15.527	15.527	2	0.033311	5552	DP1063-6	85.288	54.676			NaN	NaN	NaN	0	0	Median	3798800	0	3798800	2951	211	2798	6825	14331	14331		1	9606
TSQNSELNNMQDLVEDYKK	2	0	Oxidation (M)	2271.0325	0.03250528	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	2.4	0.8	1	1	3			16.706	16.706	2;3	0.00047498	9014	DP1063-8	105.14	83.789		+	NaN	NaN	NaN	0	0	Median	52314000	52314000	0	2952	20	2799	6826;6827;6828;6829;6830	14332;14333;14334;14335;14336	14335	17	5	9606
TSQVGAASAPAK	1	0	Unmodified	1086.5669	0.56693715	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	0.5		1	1			12.808	12.808	2	0.0047237	3452	DP1063-7	118.28	86.408			NaN	NaN	NaN	0	0	Median	35228000	0	35228000	2953	365	2800	6831;6832	14337;14338;14339;14340	14337		4	9606
TSQVGAASAPAKESPR	1	1	Unmodified	1555.7954	0.79543354	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	1.5	0.5	1	1				13.035	13.035	3	0.0019505	3692	DP1063-7	78.69	59.784			0.92078	0.96415	NaN	1	0	Median	8442900	2834300	5608600	2954	365	2801	6833;6834	14341;14342;14343	14343		3	9606
TSSLDPNDQVAMGR	0	1	Oxidation (M)	1505.678	0.67802052	543	Q9NY61	AATF	Protein AATF	yes	yes	0	1	0	2	0		1				15.445	15.445	2	0.034969	6898	DP1063-7	84.821	49.11			NaN	NaN	NaN	0	0	Median	9808200	0	9808200	2955	543	2802	6835	14344	14344		1	9606
TSTAPAASPNVR	0	1	Unmodified	1170.5993	0.59929991	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	13.603	13.603	2	6.4351E-05	4888	DP1063-8	142.98	111.49			0.78869	0.7897	18.512	5	0	Median	651280000	357090000	294190000	2956	130	2803	6836;6837;6838;6839;6840	14345;14346;14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365	14359		21	9606
TSTTSSMVASAEQPR	0	1	Oxidation (M)	1567.7148	0.71479996	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	1	0	4.5	0.5				1	1	13.975	13.975	2	0.0039425	5113	DP1063-9	116.74	94.408			NaN	NaN	NaN	0	0	Median	114730000	0	114730000	2957	205	2804	6841;6842	14366;14367;14368;14369	14369	232	4	9606
TSTTSSMVASAEQPR	0	1	Unmodified	1551.7199	0.71988533	205	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	0	4	0				1		15.87	15.87	2	0.0003908	7727	DP1063-9	136.7	109.99			NaN	NaN	NaN	0	0	Median	28272000	0	28272000	2958	205	2804	6843	14370;14371	14370		2	9606
TSYEEFTHK	1	0	Unmodified	1140.5088	0.50875357	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					15.079	15.079	2	0.052429	5053	DP1063-6	80.219	41.427			NaN	NaN	NaN	0	0	Median	2315800	0	2315800	2959	431	2805	6844	14372	14372		1	9606
TTDGYLLR	0	1	Unmodified	937.4869	0.48689592	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.109	17.109	2	0.025758	9378	DP1063-9	97.602	97.602			NaN	NaN	NaN	0	0	Median	116620000	0	116620000	2960	254	2806	6845	14373;14374	14374		2	9606
TTEEQVQASTPCPR	0	1	Unmodified	1602.7308	0.73078437	376	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				15.012	15.012	2	2.1082E-10	6350	DP1063-7	174.42	104.17			NaN	NaN	NaN	0	0	Median	6836800	0	6836800	2961	376	2807	6846	14375;14376	14376		2	9606
TTEPGVTGLLLAVEGPAAK	1	0	Unmodified	1823.004	0.0040293305	382	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					22.8	22.8	2	0.0013877	14811	DP1063-6	114.56	66.05			NaN	NaN	NaN	0	0	Median	3058200	0	3058200	2962	382	2808	6847	14377;14378	14377		2	9606
TTEYSKMKNMLLDLQNQK	3	0	2 Oxidation (M)	2216.0817	0.081704079	452	Q8N475	FSTL5	Follistatin-related protein 5	yes	yes	0	2	2	3	0			1			15.053	15.053	2	0.017824	6888	DP1063-8	80.871	18.138			NaN	NaN	NaN	0	0	Median	0	0	0	2963	452	2809	6848	14379	14379	538;539	1	9606
TTGFGMIYDSLDYAK	1	0	Oxidation (M)	1696.7654	0.76543854	289	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	5	0					1	21.223	21.223	2	0.00084849	15271	DP1063-10	125.82	89.139			6.836	4.0553	NaN	1	0	Median	107110000	13691000	93418000	2964	289	2810	6849	14380;14381;14382;14383	14382	348	4	9606
TTGFGMIYDSLDYAK	1	0	Unmodified	1680.7705	0.77052392	289	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	5	0					1	22.393	22.393	2	0.0030988	16648	DP1063-10	113.77	70.139			NaN	NaN	NaN	0	0	Median	10707000	0	10707000	2965	289	2810	6850	14384	14384		1	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	1	Oxidation (M)	3198.6019	0.60194904	252	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	1	0	4	0				2		20.554	20.554	3;4	1.3427E-36	14119	DP1063-9	197.28	173.07			0.8244	0.86235	7.6052	2	0	Median	154080000	81873000	72204000	2966	252	2811	6851;6852	14385;14386;14387;14388;14389;14390;14391;14392;14393	14392	310	9	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	1	Unmodified	3182.607	0.60703441	252	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	4	0				1		21.047	21.047	4	2.5891E-08	14722	DP1063-9	94.08	94.08			0.88128	0.92185	NaN	1	0	Median	27107000	15264000	11844000	2967	252	2811	6853	14394	14394		1	9606
TTHFVEGGDAGNR	0	1	Unmodified	1359.6167	0.61674089	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				2		13.511	13.511	2;3	0.0027331	4557	DP1063-9	76.728	63.492			8.999	9.4133	NaN	1	0	Median	27366000	2802300	24564000	2968	152	2812	6854;6855	14395;14396;14397;14398	14395		4	9606
TTHFVEGGDAGNREDQINR	0	2	Unmodified	2114.973	0.97295699	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				3		14.514	14.514	2;3;4	1.4316E-27	5937	DP1063-9	206.46	152.5			10.894	11.053	NaN	1	0	Median	417440000	14965000	402470000	2969	152	2813	6856;6857;6858	14399;14400;14401;14402;14403;14404;14405;14406	14406		8	9606
TTHYTPLACGSNPLKR	1	1	Unmodified	1814.9098	0.90975179	63	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	1	3	0			1			15.683	15.683	3	0.049765	7716	DP1063-8	64.407	37.517			NaN	NaN	NaN	0	0	Median	9181400	0	9181400	2970	63	2814	6859	14407	14407		1	9606
TTLPERPLTEVK	1	1	Unmodified	1382.7769	0.77692993	482	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				16.073	16.073	3	0.018595	7816	DP1063-7	77.597	50.188			NaN	NaN	NaN	0	0	Median	37905000	0	37905000	2971	482	2815	6860	14408;14409	14409		2	9606
TTPNSGDVQVTEDAVR	0	1	Unmodified	1687.8013	0.80130678	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	3	0			1			16.4	16.4	2	0.002153	8575	DP1063-8	119.39	75.884			NaN	NaN	NaN	0	0	Median	62712000	0	62712000	2972	190	2816	6861	14410;14411	14411		2	9606
TTPNSGDVQVTEDAVRR	0	2	Unmodified	1843.9024	0.90241781	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3	0			1			15.685	15.685	3	0.0044856	7673	DP1063-8	93.478	65.333			NaN	NaN	NaN	0	0	Median	22710000	0	22710000	2973	190	2817	6862	14412;14413	14413		2	9606
TTPSVVAFTADGER	0	1	Unmodified	1449.71	0.70997257	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				18.437	18.437	2	0.02395	10968	DP1063-7	85.845	30.781			NaN	NaN	NaN	0	0	Median	0	0	0	2974	198	2818	6863	14414	14414		1	9606
TTPSYVAFTDTER	0	1	Unmodified	1486.694	0.69398816	124;128;145	P17066;P48741;P0DMV9;P0DMV8;P11142;P54652	HSPA6;HSPA7;HSPA1B;HSPA1A;HSPA8;HSPA2	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3	0.816		1	1	1		18.418	18.418	2	0.00029116	11003	DP1063-8	141.91	108.68			4.3432	4.5003	15.084	3	0	Median	1048899999.9999999	195850000	853020000	2975	145;124;128	2819	6864;6865;6866	14415;14416;14417;14418;14419;14420;14421;14422;14423;14424	14418		10	9606
TTQVPQFILDDFIQNDR	0	1	Unmodified	2049.0167	0.016719282	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				23.835	23.835	2	9.3838E-06	18086	DP1063-7	142.95	97.592			NaN	NaN	NaN	0	0	Median	13143000	0	13143000	2976	345	2820	6867	14425;14426	14426		2	9606
TTTFFQFCNADSGTLLCTDVAAR	0	1	Unmodified	2595.1734	0.17337263	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2.5	0.5		1	1			22.798	22.798	2	8.264E-15	16738	DP1063-7	158.91	130.56			NaN	NaN	NaN	0	0	Median	15533000	0	15533000	2977	537	2821	6868;6869	14427;14428;14429	14427		3	9606
TTTVNIGSISTADGSALVK	1	0	Unmodified	1833.9684	0.96837211	470	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				1		19.585	19.585	2	7.8698E-11	12824	DP1063-9	166.79	118.79			NaN	NaN	NaN	0	0	Median	13861000	0	13861000	2978	470	2822	6870	14430	14430		1	9606
TTVEYLIK	1	0	Unmodified	965.54335	0.54334816	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.016	18.016	1;2	0.00082975	8617	DP1063-6	132.09	76.653			1.0129	1.0333	2.3918	2	0	Median	977940000	511230000	466710000	2979	355	2823	6871;6872;6873	14431;14432;14433;14434;14435;14436;14437	14433		6	9606
TVAGGAWTYNTTSAVTVK	1	0	Unmodified	1825.921	0.92102798	259	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	5	0					1	18.782	18.782	2	1.3105E-26	12066	DP1063-10	234.82	201.23			7.1418	4.2368	NaN	1	0	Median	87886000	11150000	76736000	2980	259	2824	6874	14438;14439;14440;14441;14442;14443	14439		6	9606
TVAIHSDVDASSVHVK	1	0	Unmodified	1663.8529	0.85294842	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		15.152	15.152	2;3	9.942600000000001E-45	6524	DP1063-7	229.56	229.56			0.939	0.95658	4.3193	2	0	Median	664260000	200520000	463740000	2981	94	2825	6875;6876;6877;6878	14444;14445;14446;14447;14448;14449;14450;14451;14452;14453;14454;14455;14456;14457	14445		14	9606
TVAIYSEQDTGQMHR	0	1	Oxidation (M)	1750.7944	0.79444726	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3.22	1.31	1	2	2	2	2	14.983	14.983	2;3	1.0737E-06	6272	DP1063-7	164.81	164.81			0.97689	0.93643	12.503	9	0	Median	1432200000	702260000	729970000	2982	130	2826	6879;6880;6881;6882;6883;6884;6885;6886;6887	14458;14459;14460;14461;14462;14463;14464;14465;14466;14467;14468;14469;14470;14471;14472;14473;14474;14475;14476;14477;14478;14479;14480;14481;14482;14483;14484;14485;14486;14487;14488;14489;14490;14491;14492;14493;14494;14495;14496;14497;14498;14499	14477	165	42	9606
TVAIYSEQDTGQMHR	0	1	Unmodified	1734.7995	0.79953264	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.6	1.02		1	1	2	1	15.892	15.892	2;3	5.4355E-103	7513	DP1063-7	286.86	258.62			1.0062	1.0274	35.114	3	0	Median	97312000	46809000	50503000	2983	130	2826	6888;6889;6890;6891;6892	14500;14501;14502;14503;14504;14505;14506;14507;14508;14509;14510;14511	14505		12	9606
TVALWDLR	0	1	Unmodified	972.53927	0.53926584	407;347	Q16576;Q09028	RBBP7;RBBP4	Histone-binding protein RBBP7;Histone-binding protein RBBP4	no	no	0	0	0	3	0			1			20.851	20.851	2	0.027701	14306	DP1063-8	96.253	40.242			NaN	NaN	NaN	0	0	Median	7466000	0	7466000	2984	407;347	2827	6893	14512	14512		1	9606
TVANLLSGK	1	0	Unmodified	901.52328	0.52328142	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				17.546	17.546	2	0.016893	9711	DP1063-7	96.034	49.905			NaN	NaN	NaN	0	0	Median	109570000	0	109570000	2985	365	2828	6894;6895	14513;14514;14515;14516	14515		4	9606
TVAQSQQLETNSQR	0	1	Unmodified	1588.7805	0.78051176	204	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		14.086	14.086	2	2.0815E-11	5405	DP1063-9	188.91	118.88			NaN	NaN	NaN	0	0	Median	5425500	0	5425500	2986	204	2829	6896	14517;14518	14518		2	9606
TVDATGKEIELTHR	1	1	Unmodified	1568.8158	0.81583463	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	1	3	1		1		1		14.922	14.922	3	0.0018166	6253	DP1063-7	107.99	82.667			NaN	NaN	NaN	0	0	Median	23431000	0	23431000	2987	54	2830	6897;6898	14519;14520	14519		2	9606
TVELPLNKEEIER	1	1	Unmodified	1568.841	0.84098675	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	1	2	0		1				17.608	17.608	3	0.029672	9849	DP1063-7	71.268	34.984			NaN	NaN	NaN	0	0	Median	17151000	0	17151000	2988	504	2831	6899	14521	14521		1	9606
TVELSIPADPANLDSEAK	1	0	Unmodified	1868.9367	0.93673763	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.24	0.709	22	1	1	1		25.051	25.051	2	2.082E-07	11523	DP1063-6	157.5	157.5			0.7889	0.8083	7.9742	8	0	Median	775830000	424710000	351110000	2989	355	2832	6900;6901;6902;6903;6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915;6916;6917;6918;6919;6920;6921;6922;6923;6924	14522;14523;14524;14525;14526;14527;14528;14529;14530;14531;14532;14533;14534;14535;14536;14537;14538;14539;14540;14541;14542;14543;14544;14545;14546;14547;14548;14549;14550;14551;14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562;14563;14564;14565;14566;14567;14568;14569;14570;14571;14572;14573	14524		52	9606
TVETVEGGGLVVILLR	0	1	Unmodified	1653.9665	0.96652161	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				23.463	23.463	2	1.4511E-05	17648	DP1063-7	147.37	119.94			NaN	NaN	NaN	0	0	Median	3751400	0	3751400	2990	514	2833	6925	14574;14575	14575		2	9606
TVEVAVPADPANLDSEAK	1	0	Unmodified	1824.9105	0.91052288	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.91	18.91	2	0.029424	9826	DP1063-6	82.515	55.106			0.92475	0.94333	NaN	1	0	Median	9209300	4628900	4580400	2991	38	2834	6926	14576	14576		0	9606
TVFAEHISDECK	1	0	Unmodified	1434.6449	0.64492948	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				2		15.872	15.872	2;3	4.4658E-16	7738	DP1063-9	196.44	150.84			10.336	10.624	18.97	2	0	Median	124720000	10286000	114430000	2992	201	2835	6927;6928	14577;14578;14579;14580;14581;14582;14583	14579		7	9606
TVFAEHISDECKR	1	1	Unmodified	1590.746	0.7460405	201	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				3		14.973	14.973	2;3;4	2.7833E-10	6576	DP1063-9	184.36	130.29			11.987	11.336	NaN	1	0	Median	108710000	7047700	101670000	2993	201	2836	6929;6930;6931	14584;14585;14586;14587;14588;14589	14588		6	9606
TVFRPPLDIYDVLIR	0	2	Unmodified	1816.0247	0.024705193	520	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	1	2	0		1				23.235	23.235	3	0.00014422	17340	DP1063-7	141.85	101.66			NaN	NaN	NaN	0	0	Median	0	0	0	2994	520	2837	6932	14590	14590		1	9606
TVGALQVLGTEAQSSLLK	1	0	Unmodified	1814.0149	0.014928368	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.176	22.176	2	2.7069E-108	14011	DP1063-6	292.8	281.09			5.3132	5.42	NaN	1	0	Median	20956000	3725400	17231000	2995	318	2838	6933	14591;14592;14593;14594	14591		4	9606
TVGIVGNQPK	1	0	Unmodified	1011.5713	0.57129425	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	14.771	14.771	2	2.3145E-07	6417	DP1063-8	143.89	116.63			0.89195	0.95925	32.735	3	0	Plateau	546990000	280380000	266610000	2996	95	2839	6934;6935;6936	14595;14596;14597;14598;14599;14600;14601;14602;14603;14604	14601		10	9606
TVGVEPAADGK	1	0	Unmodified	1042.5295	0.52948901	216	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	5	0					1	13.989	13.989	2	1.076E-05	6041	DP1063-10	145.9	98.91			7.4637	4.4277	NaN	1	0	Median	83593000	9394400	74199000	2997	216	2840	6937	14605;14606;14607;14608	14605		4	9606
TVINYDVAR	0	1	Unmodified	1049.5506	0.55055881	442	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				16.798	16.798	2	0.047532	8727	DP1063-7	81.548	22.303			NaN	NaN	NaN	0	0	Median	11491000	0	11491000	2998	442	2841	6938	14609	14609		1	9606
TVMENFVAFVDK	1	0	Oxidation (M)	1414.6803	0.68025235	12	CON__P02769			yes	yes	0	1	0	2.03	1.03	12	9	8	1	1	26.604	26.604	2;3	0.0017732	13936	DP1063-9	137.89	97.958		+	NaN	NaN	NaN	0	0	Median	1138800000	1138800000	0	2999	12	2842	6939;6940;6941;6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958;6959;6960;6961;6962;6963;6964;6965;6966;6967;6968;6969	14610;14611;14612;14613;14614;14615;14616;14617;14618;14619;14620;14621;14622;14623;14624;14625;14626;14627;14628;14629;14630;14631;14632;14633;14634;14635;14636;14637;14638;14639;14640;14641;14642;14643;14644;14645;14646;14647;14648;14649;14650;14651;14652;14653;14654	14654	7	45	
TVMENFVAFVDK	1	0	Unmodified	1398.6853	0.68533773	12	CON__P02769			yes	yes	0	0	0	2.33	0.624	1	6	5			26.192	26.192	2;3	4.0399E-06	24717	DP1063-8	163.88	131.15		+	NaN	NaN	NaN	0	0	Median	1314600000	1314600000	0	3000	12	2842	6970;6971;6972;6973;6974;6975;6976;6977;6978;6979;6980;6981	14655;14656;14657;14658;14659;14660;14661;14662;14663;14664;14665;14666;14667;14668;14669;14670;14671;14672;14673;14674;14675;14676;14677;14678;14679;14680;14681;14682;14683;14684;14685;14686;14687;14688;14689;14690;14691;14692;14693;14694;14695;14696;14697;14698;14699;14700;14701;14702;14703	14677		49	
TVQSLEIDLDSMR	0	1	Oxidation (M)	1521.7345	0.73447277	100	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	1	0	4	0				1		19.378	19.378	2	0.0020902	12533	DP1063-9	81.625	81.625			0.92331	0.96582	NaN	1	0	Median	29151000	15485000	13666000	3001	100	2843	6982	14704;14705	14704	101	2	9606
TVSALGLDPSGAR	0	1	Unmodified	1242.6568	0.65681479	539	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	2	0		1				17.844	17.844	2	0.0082358	10142	DP1063-7	104.22	60.779			NaN	NaN	NaN	0	0	Median	13526000	0	13526000	3002	539	2844	6983	14706;14707	14706		2	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	0	Oxidation (M)	2944.4488	0.44880244	105	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	3.97	0.362		1		36	1	29.644	29.644	2;3;4	4.0331999999999995E-46	14735	DP1063-9	211.09	180.35			NaN	NaN	NaN	0	0	Median	3596999999.9999995	0	3596999999.9999995	3003	105	2845	6984;6985;6986;6987;6988;6989;6990;6991;6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014;7015;7016;7017;7018;7019;7020;7021	14708;14709;14710;14711;14712;14713;14714;14715;14716;14717;14718;14719;14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733;14734;14735;14736;14737;14738;14739;14740;14741;14742;14743;14744;14745;14746;14747;14748;14749;14750;14751;14752;14753;14754;14755;14756;14757;14758;14759;14760;14761;14762;14763;14764;14765;14766;14767;14768;14769;14770;14771;14772;14773;14774;14775;14776;14777;14778;14779;14780;14781;14782;14783;14784;14785;14786	14721	106	79	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	0	Unmodified	2928.4539	0.45388781	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		21.573	21.573	2;4	5.3507E-36	15380	DP1063-9	199.41	178.44			NaN	NaN	NaN	0	0	Median	115580000	0	115580000	3004	105	2845	7022;7023	14787;14788;14789;14790	14789		4	9606
TVTAMDVVYALK	1	0	Oxidation (M)	1325.6901	0.69008876	285	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	5	0					1	19.925	19.925	2	0.00039055	13533	DP1063-10	117.7	76.974			3.0406	1.8038	NaN	1	0	Median	131470000	30409000	101060000	3005	285	2846	7024	14791;14792;14793;14794	14792	340	4	9606
TVTAMDVVYALK	1	0	Unmodified	1309.6952	0.69517413	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	21.831	21.831	2	9.5742E-05	15999	DP1063-10	134.68	74.158			3.0506	1.8097	NaN	1	0	Median	43182000	10290000	32892000	3006	285	2846	7025	14795;14796	14796		2	9606
TVTAMDVVYALKR	1	1	Oxidation (M)	1481.7912	0.79119978	285	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	18.952	18.952	2;3	0.00018811	12126	DP1063-10	114.71	88.796			3.7212	3.6724	1.6041	2	0	Median	164080000	35646000	128430000	3007	285	2847	7026;7027	14797;14798;14799;14800;14801;14802;14803	14799	340	7	9606
TVTAMDVVYALKR	1	1	Unmodified	1465.7963	0.79628516	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					2	20.406	20.406	2;3	1.1397E-09	14241	DP1063-10	177.06	125.63			3.4508	3.4056	NaN	1	0	Median	53617000	9364100	44253000	3008	285	2847	7028;7029	14804;14805;14806;14807	14807		4	9606
TVTNAVVTVPAYFNDSQR	0	1	Unmodified	1980.9905	0.99050453	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	2.5	0.5		1	1			20.236	20.236	2	2.546E-12	13416	DP1063-8	179.5	152.4			6.0764	6.2961	NaN	1	0	Median	121410000	11246000	110160000	3009	128	2848	7030;7031	14808;14809;14810;14811	14811		4	9606
TYDPSGDSTLPTCSK	1	0	Unmodified	1627.7036	0.70356657	571	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			16.161	16.161	2	0.0098385	8351	DP1063-8	95.417	59.1			NaN	NaN	NaN	0	0	Median	26347000	0	26347000	3010	571	2849	7032	14812	14812		1	9606
TYGEPESAGPSR	0	1	Unmodified	1249.5575	0.55749468	230	P50402	EMD	Emerin	yes	yes	0	0	0	4	0				1		14.266	14.266	2	0.0025041	5595	DP1063-9	83.869	61.632			1.7581	1.8391	NaN	1	0	Median	6925900	2276900	4649000	3011	230	2850	7033	14813;14814;14815	14814		3	9606
TYNPFYAFLASK	1	0	Unmodified	1420.7027	0.70270235	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.45	0.988		9		1	1	26.537	26.537	2	0.00077631	17669	DP1063-7	115.57	92.994			42.288	43.575	NaN	1	0	Median	365370000	6476700	358900000	3012	418	2851	7034;7035;7036;7037;7038;7039;7040;7041;7042;7043;7044	14816;14817;14818;14819;14820;14821;14822;14823;14824;14825;14826;14827;14828;14829;14830;14831;14832;14833;14834;14835	14819		20	9606
TYQAIKDFNR	1	1	Unmodified	1254.6357	0.63568542	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.801	15.801	2	7.5043E-05	5875	DP1063-6	134.23	115.97			0.95939	1.0132	NaN	1	0	Median	116760000	57613000	59149000	3013	355	2852	7045	14836;14837;14838	14837		3	9606
TYSYLTPDLWK	1	0	Unmodified	1385.6867	0.68671794	141	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		21.605	21.605	2	3.2642E-05	15406	DP1063-9	128.6	128.6			4.119	4.2336	NaN	1	0	Median	42839000	8250600	34588000	3014	141	2853	7046	14839;14840;14841;14842;14843;14844	14839		6	9606
VACIGAWHPAR	0	1	Unmodified	1236.6186	0.61859557	201	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	4	0				2		16.246	16.246	2;3	0.00060454	8238	DP1063-9	89.886	89.886			12.522	13.099	NaN	1	0	Median	108770000	8690000	100080000	3015	201	2854	7047;7048	14845;14846;14847;14848	14845		4	9606
VADEDDVDNEEAALLHEEATMTIEELLTR	0	1	Oxidation (M)	3286.5035	0.50347636	46	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	1	0	3	0			1			25.554	25.554	3	0.0089794	20008	DP1063-8	52.192	28.097			NaN	NaN	NaN	0	0	Median	4291200	0	4291200	3016	46	2855	7049	14849;14850	14849	44	2	9606
VADEMDVMLGQEVGYSIR	0	1	2 Oxidation (M)	2042.9289	0.92889183	48	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	2	0	2	0		1				19.535	19.535	2	0.039395	12516	DP1063-7	85.837	56.032			NaN	NaN	NaN	0	0	Median	13673000	0	13673000	3017	48	2856	7050	14851	14851		1	9606
VADLTEQYNEQYGAVR	0	1	Unmodified	1854.8748	0.87480607	506	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	4	0				1		18.23	18.23	2	3.8058E-14	10944	DP1063-9	181.68	101.44			NaN	NaN	NaN	0	0	Median	7507500	0	7507500	3018	506	2857	7051	14852;14853	14852		2	9606
VADNAQQQYVR	0	1	Unmodified	1290.6317	0.63166267	458	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	2	0		1				14.489	14.489	2	7.9151E-06	5597	DP1063-7	179.37	148.69			NaN	NaN	NaN	0	0	Median	10989000	0	10989000	3019	458	2858	7052	14854;14855;14856	14855		3	9606
VAEDEAEAAAAAK	1	0	Unmodified	1244.5885	0.58846046	112	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				14.817	14.817	2	0.0004111	6043	DP1063-7	136.52	100.12			1.1433	1.178	NaN	1	0	Median	18548000	9779200	8769200	3020	112	2859	7053	14857;14858;14859;14860	14857		4	9606
VAEITELILK	1	0	Unmodified	1127.6802	0.680176	340	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	3	0			1			21.185	21.185	2	0.010538	14759	DP1063-8	109.71	76.902			NaN	NaN	NaN	0	0	Median	12064000	0	12064000	3021	340	2860	7054	14861;14862	14862		2	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	1	0	Oxidation (M)	2918.2988	0.29884374	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.5	0.5		1	1			14.74	14.74	3	3.2189E-05	6450	DP1063-8	81.808	56.975			NaN	NaN	NaN	0	0	Median	21551000	0	21551000	3022	381	2861	7055;7056	14863;14864;14865;14866;14867	14866	478	5	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	1	0	Unmodified	2902.3039	0.30392911	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				15.298	15.298	4	0.00010742	6736	DP1063-7	80.786	64.231			NaN	NaN	NaN	0	0	Median	15216000	0	15216000	3023	381	2861	7057	14868	14868		1	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	1	1	Oxidation (M)	3074.4	0.39995476	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2.6	0.8		3	1	1		14.249	14.249	3;4;5	2.1532E-07	5218	DP1063-7	104.97	81.504			NaN	NaN	NaN	0	0	Median	140830000	0	140830000	3024	381	2862	7058;7059;7060;7061;7062	14869;14870;14871;14872;14873;14874;14875;14876;14877;14878	14871	478	10	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	1	1	Unmodified	3058.405	0.40504014	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				14.712	14.712	4	2.5999E-05	5897	DP1063-7	80.683	58.028			NaN	NaN	NaN	0	0	Median	15015000	0	15015000	3025	381	2862	7063	14879;14880;14881;14882	14879		4	9606
VAFDPEQKPLHGVLK	2	0	Unmodified	1676.925	0.92499115	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.17	1.21		3		2	1	17.028	17.028	2;3;4	0.0012478	9000	DP1063-7	111.31	98.821			NaN	NaN	NaN	0	0	Median	368530000	0	368530000	3026	381	2863	7064;7065;7066;7067;7068;7069	14883;14884;14885;14886;14887;14888;14889;14890;14891;14892	14885		10	9606
VAGMDVELTVEER	0	1	Oxidation (M)	1462.6974	0.69735898	270	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	0	4	0				1		17.588	17.588	2	0.013167	10054	DP1063-9	102.53	71.734			NaN	NaN	NaN	0	0	Median	0	0	0	3027	270	2864	7070	14893	14893	326	1	9606
VAGSPGWVR	0	1	Unmodified	927.49265	0.49265	112	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				16.269	16.269	2	0.0057499	8020	DP1063-7	123.69	66.13			NaN	NaN	NaN	0	0	Median	10785000	0	10785000	3028	112	2865	7071	14894;14895	14894		2	9606
VALGETQLVQEVR	0	1	Unmodified	1440.7936	0.79364262	582	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	2	0		1				18.951	18.951	2	4.475E-07	11709	DP1063-7	159.09	57.112			NaN	NaN	NaN	0	0	Median	20893000	0	20893000	3029	582	2866	7072	14896;14897	14896		2	9606
VANASYYR	0	1	Unmodified	942.45593	0.45593014	43	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				14.25	14.25	2	0.0071353	5284	DP1063-7	113.89	84.316			NaN	NaN	NaN	0	0	Median	17068000	0	17068000	3030	43	2867	7073	14898;14899	14899		2	9606
VANVSLLALYK	1	0	Unmodified	1189.7071	0.70705945	272	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	20.829	20.829	2	2.0349E-05	14728	DP1063-10	138.4	138.4			7.4579	4.4243	NaN	1	0	Median	93461000	10145000	83316000	3031	272	2868	7074	14900;14901;14902;14903	14900		4	9606
VAPAPAVVK	1	0	Unmodified	850.52764	0.52763852	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		14.36	14.36	2	0.007013	5625	DP1063-9	85.265	35.675			10.299	10.586	NaN	1	0	Median	91629000	9551300	82078000	3032	280	2869	7075	14904;14905;14906	14904		3	9606
VAPEEHPVLLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	252	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	4	0				2		18.402	18.402	2;3	1.2165E-26	11122	DP1063-9	231.52	103.16			0.63283	0.65044	3.0023	2	0	Median	173580000	103800000	69775000	3033	252	2870	7076;7077	14907;14908;14909;14910;14911;14912	14910		6	9606
VAQGVSGAVQDK	1	0	Unmodified	1157.6041	0.60405094	134	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	3	0			1			13.818	13.818	2	0.0073641	5233	DP1063-8	74.533	74.533			1.1249	1.1329	NaN	1	0	Median	6281500	3038900	3242500	3034	134	2871	7078	14913	14913		1	9606
VAQLEQVYIR	0	1	Unmodified	1217.6768	0.67682195	279	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	18.308	18.308	2	5.3368E-09	11448	DP1063-10	162.49	114.63			3.955	2.8525	NaN	1	0	Median	43016000	7562700	35453000	3035	279	2872	7079	14914;14915;14916;14917	14914		4	9606
VASGCLDINSSVK	1	0	Unmodified	1348.6657	0.66566492	95	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.639	16.639	2	4.5649E-55	8883	DP1063-8	242.59	212.03			1.0032	1.0207	2.9263	2	0	Median	504010000	230770000	273230000	3036	95	2873	7080;7081	14918;14919;14920;14921;14922;14923	14919		6	9606
VASIETGLAAAAAK	1	0	Unmodified	1271.7085	0.70851601	562	Q9UPP1;O75151	PHF8;PHF2	Histone lysine demethylase PHF8;Lysine-specific demethylase PHF2	yes	no	0	0	0	2	0		1				18.104	18.104	2	0.002706	10523	DP1063-7	118.4	83.871			NaN	NaN	NaN	0	0	Median	19010000	0	19010000	3037	562	2874	7082	14924;14925	14924		2	9606
VASLEESEGNKQDLK	2	0	Unmodified	1645.8159	0.81589421	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			14.468	14.468	2	2.0516E-09	6108	DP1063-8	170.04	131.24			0.84661	0.82414	NaN	1	0	Median	8103200	4031100	4072100	3038	344	2875	7083	14926	14926		1	9606
VASTENGIIFGNIVYDVSGAASDR	0	1	Unmodified	2454.2027	0.20268215	242	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	2	0		1				23.719	23.719	2	0.015394	17960	DP1063-7	81.144	46.818			NaN	NaN	NaN	0	0	Median	0	0	0	3039	242	2876	7084	14927	14927		1	9606
VATVSLPR	0	1	Unmodified	841.50215	0.50215205	8	CON__P00761			yes	yes	0	0	0	2.83	1.34	1	2	1	1	1	16.241	16.241	2	0.0010003	12813	DP1063-10	147.69	46.951		+	NaN	NaN	NaN	0	0	Median	99333000000	99333000000	0	3040	8	2877	7085;7086;7087;7088;7089;7090	14928;14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939;14940;14941;14942;14943;14944;14945;14946;14947;14948;14949;14950;14951;14952;14953;14954;14955;14956;14957;14958;14959;14960;14961;14962;14963;14964;14965;14966;14967;14968;14969;14970;14971;14972;14973;14974;14975;14976;14977;14978;14979;14980;14981;14982;14983;14984;14985;14986;14987;14988;14989;14990;14991;14992;14993;14994;14995;14996;14997;14998;14999;15000;15001;15002;15003;15004;15005;15006;15007;15008;15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019;15020;15021;15022;15023;15024;15025;15026;15027;15028;15029;15030;15031;15032;15033;15034;15035;15036;15037;15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052;15053;15054;15055;15056;15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067;15068;15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084;15085;15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098;15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116;15117;15118;15119;15120;15121;15122;15123;15124;15125;15126;15127;15128;15129;15130;15131;15132;15133;15134;15135;15136;15137;15138;15139;15140;15141;15142;15143;15144;15145;15146;15147;15148;15149;15150;15151;15152;15153;15154;15155;15156;15157;15158;15159;15160;15161;15162;15163;15164;15165;15166;15167;15168;15169;15170;15171;15172;15173;15174;15175;15176;15177;15178;15179;15180	14935		253	
VATWFNQPAR	0	1	Unmodified	1188.604	0.60399136	174	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4.5	0.5				1	1	18.533	18.533	2	0.001367	11732	DP1063-10	148.04	115.23			NaN	NaN	NaN	0	0	Median	116570000	0	116570000	3041	174	2878	7091;7092	15181;15182;15183;15184	15182		4	9606
VAYVSFGPHAGK	1	0	Unmodified	1231.635	0.63495714	231	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	16.386	16.386	2	0.00070229	8985	DP1063-10	140.11	112.03			NaN	NaN	NaN	0	0	Median	41101000	0	41101000	3042	231	2879	7093	15185;15186	15186		2	9606
VCADLIR	0	1	Unmodified	845.44292	0.44292261	253	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					1	16.18	16.18	2	0.025626	8779	DP1063-10	101.21	51.622			NaN	NaN	NaN	0	0	Median	18504000	0	18504000	3043	253	2880	7094	15187	15187		1	9606
VCEEIAIIPSK	1	0	Unmodified	1257.6639	0.663874	115	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	5	0					1	18.568	18.568	2	0.00029831	11802	DP1063-10	103.26	103.26			3.3109	1.9641	NaN	1	0	Median	16743000	3561800	13181000	3044	115	2881	7095	15188	15188		1	9606
VCNPIITK	1	0	Unmodified	943.51609	0.51608756	128	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			15.584	15.584	2	0.032081	7451	DP1063-8	67.494	36.204			3.637	3.663	NaN	1	0	Median	76097000	13681000	62416000	3045	128	2882	7096	15189	15189		1	9606
VCNVAPIAGETK	1	0	Unmodified	1257.6387	0.63872189	371	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				15.514	15.514	2	0.03211	7019	DP1063-7	82.261	38.819			NaN	NaN	NaN	0	0	Median	7023300	0	7023300	3046	371	2883	7097	15190	15190		1	9606
VCTLAIIDPGDSDIIR	0	1	Unmodified	1756.9029	0.90293508	293	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	3	2	1				1	21.711	21.711	2	1.8406E-16	15791	DP1063-10	191.79	191.79			12.368	8.9206	NaN	1	0	Median	121510000	9079600	112430000	3047	293	2884	7098;7099	15191;15192;15193;15194	15192		4	9606
VDEEEKEYTCK	2	0	Unmodified	1428.6079	0.60787527	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	1	1	0	1					13.444	13.444	3	0.0052552	2985	DP1063-6	102.05	88.318			NaN	NaN	NaN	0	0	Median	4457500	0	4457500	3048	73	2885	7100	15195;15196	15196		2	9606
VDGVTQSSSNFQNSFTDQDSK	1	0	Unmodified	2289.9986	0.99856261	22	CON__Q05B55			yes	yes	0	0	0	5	0					1	18.208	18.208	2	3.4443E-06	11339	DP1063-10	110.38	84.935		+	NaN	NaN	NaN	0	0	Median	0	0	0	3049	22	2886	7101	15197	15197		1	
VDKAAAAAAALQAK	2	0	Unmodified	1297.7354	0.73539946	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				1		15.439	15.439	3	0.0098119	7138	DP1063-9	62.357	62.357			8.0143	8.478	NaN	1	0	Median	20956000	3352700	17604000	3050	193	2887	7102	15198;15199	15199		2	9606
VDLLNQEIEFLK	1	0	Unmodified	1459.7922	0.79224564	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.41	1	1	1	1	1	22.985	22.985	2	1.122E-18	15029	DP1063-6	236.92	162.76		+	NaN	NaN	NaN	0	0	Median	70846000	70846000	0	3051	20	2888	7103;7104;7105;7106;7107	15200;15201;15202;15203;15204;15205;15206;15207;15208	15201		9	9606
VDNDENEHQLSLR	0	1	Unmodified	1567.7227	0.72266253	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3.8	0.803	2	2		35	2	19.923	19.923	2;3	1.0056E-118	6772	DP1063-9	290.28	253.59			88.276	92.34	1.3439	2	0	Median	5159400000	46726000	5112700000	3052	105	2889	7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122;7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139;7140;7141;7142;7143;7144;7145;7146;7147;7148	15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220;15221;15222;15223;15224;15225;15226;15227;15228;15229;15230;15231;15232;15233;15234;15235;15236;15237;15238;15239;15240;15241;15242;15243;15244;15245;15246;15247;15248;15249;15250;15251;15252;15253;15254;15255;15256;15257;15258;15259;15260;15261;15262;15263;15264;15265;15266;15267	15226		59	9606
VDNMIIQSISLLDQLDKDINTFSMR	1	1	2 Oxidation (M)	2940.4573	0.45725863	35	O00567	NOP56	Nucleolar protein 56	yes	yes	0	2	1	3	0			1			26.104	26.104	3	0.009143	20629	DP1063-8	65.881	13.372			NaN	NaN	NaN	0	0	Median	12799000	0	12799000	3053	35	2890	7149	15268;15269	15268	29;30	2	9606
VDNSSLTGESEPQTR	0	1	Unmodified	1618.7435	0.74345755	92	P05023;P13637;P50993;P20648	ATP1A1;ATP1A3;ATP1A2;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1	yes	no	0	0	0	1.6	0.49	2	3				15.127	15.127	2	1.5679E-08	6440	DP1063-7	163.45	120.03			NaN	NaN	NaN	0	0	Median	19093000	0	19093000	3054	92	2891	7150;7151;7152;7153;7154	15270;15271;15272;15273;15274;15275;15276	15273		7	9606
VDPVYIHLAER	0	1	Unmodified	1310.6983	0.69828568	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.4	1.36	2	1		2		18.035	18.035	2;3	1.3704E-10	8679	DP1063-6	144.65	95.114			0.75935	0.79431	23.532	5	0	Median	371060000	196800000	174260000	3055	355	2892	7155;7156;7157;7158;7159	15277;15278;15279;15280;15281;15282;15283;15284;15285;15286;15287;15288;15289;15290	15281		14	9606
VDSGIQPGSDISIYYDPMISK	1	0	Oxidation (M)	2300.0882	0.088229245	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.25	0.829		1	1	2		20.906	20.906	2	2.0395E-06	14305	DP1063-7	130.47	95.264			0.86119	0.87731	2.8741	2	0	Median	245780000	124780000	121000000	3056	94	2893	7160;7161;7162;7163	15291;15292;15293;15294;15295;15296;15297;15298;15299;15300	15292	93	10	9606
VDSGIQPGSDISIYYDPMISK	1	0	Unmodified	2284.0933	0.093314623	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			22.016	22.016	2	4.8071E-06	15769	DP1063-7	125.67	104.43			0.86697	0.89335	NaN	1	0	Median	42138000	16931000	25207000	3057	94	2893	7164;7165	15301;15302;15303	15301		3	9606
VDSLLENLEK	1	0	Unmodified	1158.6132	0.61321864	111	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		20.035	20.035	2	0.041498	13479	DP1063-9	61.593	21.242			2.4731	2.5419	NaN	1	0	Median	8255000	2242200	6012800	3058	111	2894	7166	15304	15304		1	9606
VDVGGSEPASLSYLSFEGATK	1	0	Unmodified	2113.0215	0.021529888	529	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	0	4	0				1		21.399	21.399	2	1.7682E-12	15153	DP1063-9	168.45	124.69			NaN	NaN	NaN	0	0	Median	6461300	0	6461300	3059	529	2895	7167	15305;15306	15305		2	9606
VDWQENDFSK	1	0	Unmodified	1266.5517	0.55168102	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.25	1	1		1		18.104	18.104	2	3.6452E-09	8755	DP1063-6	164.46	164.46			0.97862	0.99828	0.98881	3	0	Median	489120000	252070000	237040000	3060	355	2896	7168;7169;7170	15307;15308;15309;15310;15311;15312;15313;15314;15315	15308		9	9606
VDWQENDFSKR	1	1	Unmodified	1422.6528	0.65279205	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.855	16.855	2;3	5.3302E-05	7168	DP1063-6	102.53	71.707			1.0098	1.0665	0.28855	2	0	Median	266220000	128770000	137450000	3061	355	2897	7171;7172	15316;15317;15318	15316		2	9606
VEAQVYILSK	1	0	Unmodified	1148.6441	0.64412484	226	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		18.28	18.28	2	0.012354	11034	DP1063-9	106.2	43.653			NaN	NaN	NaN	0	0	Median	6764900	0	6764900	3062	226	2898	7173	15319	15319		1	9606
VEDAADSATKPENLSSK	2	0	Unmodified	1760.8428	0.84283724	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.894	2	1	2			14.302	14.302	2;3	3.108E-39	5337	DP1063-7	238.67	195.17			NaN	NaN	NaN	0	0	Median	54024000	0	54024000	3063	211	2899	7174;7175;7176;7177;7178	15320;15321;15322;15323;15324;15325;15326;15327;15328;15329	15325		10	9606
VEEAEPEEFVVEK	1	0	Unmodified	1532.7246	0.72461959	359	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	18.351	18.351	2	0.023786	11581	DP1063-10	86.911	53.044			NaN	NaN	NaN	0	0	Median	8468100	0	8468100	3064	359	2900	7179	15330	15330		1	9606
VEEQEPELTSTPNFVVEVIK	1	0	Unmodified	2286.1631	0.16310875	343	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4.33	0.471				2	1	22.311	22.311	2;3	7.0512E-22	16316	DP1063-9	189.04	189.04			20.606	21.18	NaN	1	0	Median	229120000	8315900	220800000	3065	343	2901	7180;7181;7182	15331;15332;15333;15334;15335;15336;15337;15338;15339	15334		9	9606
VEEQEPELTSTPNFVVEVIKNDDGK	2	0	Unmodified	2815.3763	0.376349	343	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	4	0				1		21.864	21.864	3	7.4645E-09	15744	DP1063-9	139.04	112.2			NaN	NaN	NaN	0	0	Median	19648000	0	19648000	3066	343	2902	7183	15340	15340		1	9606
VEEQEPELTSTPNFVVEVIKNDDGKK	3	0	Unmodified	2943.4713	0.47131202	343	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	2	4	0				2		20.788	20.788	3;4	0.00013517	14394	DP1063-9	97.049	73.309			NaN	NaN	NaN	0	0	Median	43268000	0	43268000	3067	343	2903	7184;7185	15341;15342	15342		2	9606
VEGPGSLGLEESGSR	0	1	Unmodified	1472.7107	0.71070086	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		17.443	17.443	2	0.0021736	9838	DP1063-9	120.03	61.357			NaN	NaN	NaN	0	0	Median	10675000	0	10675000	3068	352	2904	7186	15343;15344	15344		2	9606
VEGRPGASLPPLDLQALEK	1	1	Unmodified	1989.0895	0.089490294	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.67	0.943		2		1		20.214	20.214	2;3	2.1097E-08	13381	DP1063-7	167.92	167.92			0.7004	0.69628	4.1933	3	0	Median	779300000	453550000	325740000	3069	130	2905	7187;7188;7189	15345;15346;15347;15348;15349;15350;15351;15352;15353;15354;15355;15356;15357;15358;15359	15353		15	9606
VEGRPGASLPPLDLQALEKELVDR	1	2	Unmodified	2601.4126	0.41261535	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	2	2	0		1				22.4	22.4	4	4.4775E-16	16299	DP1063-7	165.13	138.92			0.62277	0.6503	NaN	1	0	Median	38527000	26156000	12371000	3070	130	2906	7190	15360;15361;15362	15361		3	9606
VEGTEPTTAFNLFVGNLNFNK	1	0	Unmodified	2311.1485	0.14846174	155	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.8	0.748		2	2	1		24.28	24.28	2;3	1.6584E-204	18600	DP1063-7	350.02	308.79			13.773	14.192	NaN	1	0	Median	212600000	7158400	205440000	3071	155	2907	7191;7192;7193;7194;7195	15363;15364;15365;15366;15367;15368;15369;15370;15371;15372;15373;15374;15375;15376;15377	15364		15	9606
VEILANDQGNR	0	1	Unmodified	1227.6208	0.62076364	145	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	3.5	1.12		1	1	1	1	15.446	15.446	2	5.4209E-16	7241	DP1063-8	191.17	0			4.6414	4.741	15.566	2	0	Median	1019199999.9999999	160950000	858210000	3072	145	2908	7196;7197;7198;7199	15378;15379;15380;15381;15382;15383;15384;15385;15386;15387	15385		10	9606
VELCSFSGYK	1	0	Unmodified	1188.5485	0.5485099	321	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	18.355	18.355	2	0.011644	11529	DP1063-10	107.57	79.75			NaN	NaN	NaN	0	0	Median	11138000	0	11138000	3073	321	2909	7200	15388;15389	15389		2	9606
VEPVGDVVSTR	0	1	Unmodified	1156.6088	0.60880197	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					16.39	16.39	2	0.030242	6672	DP1063-6	90.108	45.731			NaN	NaN	NaN	0	0	Median	0	0	0	3074	211	2910	7201	15390	15390		1	9606
VEQTETPEMMEAR	0	1	2 Oxidation (M)	1581.6651	0.66507257	240	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	2	0	2	0		1				13.625	13.625	2	0.048351	4506	DP1063-7	83.862	47.528			NaN	NaN	NaN	0	0	Median	5200700	0	5200700	3075	240	2911	7202	15391	15391		1	9606
VESDREHFVDLLLSK	1	1	Unmodified	1785.9261	0.92611336	25	CON__Q3SZR3			yes	yes	0	0	1	4	0				3		19.876	19.876	2;3;4	0.00045499	13145	DP1063-9	178.68	144.24		+	NaN	NaN	NaN	0	0	Median	130970000	130970000	0	3076	25	2912	7203;7204;7205	15392;15393;15394;15395;15396	15392		5	
VESGGPGTSAASAR	0	1	Unmodified	1245.5949	0.59494282	499	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	4	0				1		13.017	13.017	2	0.0050992	4020	DP1063-9	107.85	62.167			NaN	NaN	NaN	0	0	Median	6462900	0	6462900	3077	499	2913	7206	15397;15398	15397		2	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Oxidation (M)	2530.3717	0.37166174	309	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	2.67	1.25	1		1	1		20.232	20.232	3	6.449E-08	13626	DP1063-9	107.03	107.03			1.2043	1.2479	5.5461	3	0	Plateau	107090000	48930000	58163000	3078	309	2914	7207;7208;7209	15399;15400;15401;15402;15403;15404	15403	363	6	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Unmodified	2514.3767	0.37674711	309	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	4	0				1		21.039	21.039	3	0.020052	14679	DP1063-9	44.167	44.167			0.69449	0.73467	NaN	1	0	Median	24507000	13216000	11291000	3079	309	2914	7210	15405	15405		0	9606
VETQFQNGHYDK	1	0	Unmodified	1464.6634	0.66335673	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				14.365	14.365	2;3	1.9021E-31	4115	DP1063-6	231.07	231.07			1.0481	1.0746	4.3233	4	0	Median	383250000	182890000	200360000	3080	355	2915	7211;7212;7213;7214	15406;15407;15408;15409;15410;15411;15412;15413;15414;15415;15416;15417;15418;15419;15420	15412		15	9606
VEVGTEVTDYR	0	1	Unmodified	1266.6092	0.6091959	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.03	0.182	28	1				26.872	26.872	2	2.6288E-23	9085	DP1063-7	209.6	169.25			1.1051	1.1031	10.438	2	0	Median	1176400000	575280000	601110000	3081	355	2916	7215;7216;7217;7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229;7230;7231;7232;7233;7234;7235;7236;7237;7238;7239;7240;7241;7242;7243	15421;15422;15423;15424;15425;15426;15427;15428;15429;15430;15431;15432;15433;15434;15435;15436;15437;15438;15439;15440;15441;15442;15443;15444;15445;15446;15447;15448;15449;15450;15451;15452;15453;15454	15454		34	9606
VEVSEDEPASK	1	0	Unmodified	1188.551	0.55101232	72	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		13.909	13.909	2	0.027803	5165	DP1063-9	88.681	42.522			NaN	NaN	NaN	0	0	Median	5852400	0	5852400	3082	72	2917	7244	15455;15456	15455		2	9606
VEVTEFEDIK	1	0	Unmodified	1207.5972	0.59723423	123	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				1		18.998	18.998	2	0.00031925	11967	DP1063-9	110.76	75.401			6.2267	6.4	NaN	1	0	Median	45448000	4589000	40859000	3083	123	2918	7245	15457;15458;15459	15458		3	9606
VEWTSDTVDNEHMGR	0	1	Oxidation (M)	1790.753	0.75297638	66	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	0	5	0					2	15.818	15.818	2	0.0001723	8289	DP1063-10	135.6	100.91			NaN	NaN	NaN	0	0	Median	0	0	0	3084	66	2919	7246;7247	15460;15461	15460	55	2	9606
VFCVEEEDSESSLQK	1	0	Unmodified	1784.7775	0.77745979	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		17.703	17.703	2	2.9590000000000003E-25	9945	DP1063-7	227.36	194.61			NaN	NaN	NaN	0	0	Median	180280000	0	180280000	3085	381	2920	7248;7249;7250	15462;15463;15464;15465;15466	15463		5	9606
VFCVEEEDSESSLQKR	1	1	Unmodified	1940.8786	0.87857082	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		2				16.712	16.712	2;3	1.0239E-39	8574	DP1063-7	248.21	172.79			NaN	NaN	NaN	0	0	Median	87453000	0	87453000	3086	381	2921	7251;7252	15467;15468;15469;15470	15469		4	9606
VFDYSEYWEGAR	0	1	Unmodified	1520.6572	0.65720872	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				21.136	21.136	2	8.1474E-32	14636	DP1063-7	222.28	203.94			1.0292	1.0191	NaN	1	0	Median	464600000	228490000	236110000	3087	130	2922	7253	15471;15472;15473;15474	15473		4	9606
VFEVSLADLQNDEVAFR	0	1	Unmodified	1950.9687	0.96870646	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		23.249	23.249	2	4.0014E-75	17466	DP1063-9	262.43	230.71			6.775	7.0869	NaN	1	0	Median	17902000	2051400	15851000	3088	254	2923	7254	15475;15476;15477	15475		3	9606
VFEVSLADLQNDEVAFRK	1	1	Unmodified	2079.0637	0.063669474	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		21.632	21.632	2	1.0442999999999998E-40	15476	DP1063-9	242.4	191.92			NaN	NaN	NaN	0	0	Median	7115400	0	7115400	3089	254	2924	7255	15478;15479	15479		2	9606
VFIGNLNTLVVK	1	0	Unmodified	1315.7864	0.7863724	111	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		21.066	21.066	2	0.00011279	14715	DP1063-9	126.71	126.71			3.6578	3.7596	NaN	1	0	Median	63649000	10516000	53134000	3090	111	2925	7256	15480;15481;15482;15483	15482		4	9606
VFIMDSCDELIPEYLNFIR	0	1	Oxidation (M)	2389.1334	0.1334053	113	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		1				25.096	25.096	2	5.8412E-16	19639	DP1063-7	178.15	152.83			NaN	NaN	NaN	0	0	Median	4530300	0	4530300	3091	113	2926	7257	15484;15485	15485	126	2	9606
VFLENVIR	0	1	Unmodified	988.57057	0.57056597	285	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	19.813	19.813	2	1.4605E-15	13404	DP1063-10	179.16	108.89			3.2006	2.3085	NaN	1	0	Median	728990000	172310000	556680000	3092	285	2927	7258	15486;15487;15488;15489	15488		4	9606
VFLIDLNSTHGTFLGHIR	0	1	Unmodified	2039.0952	0.095244374	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				2		20.962	20.962	3;4	6.3899E-16	14593	DP1063-9	177.04	152.14			NaN	NaN	NaN	0	0	Median	29825000	0	29825000	3093	352	2928	7259;7260	15490;15491;15492;15493	15490		4	9606
VFQFLNAK	1	0	Unmodified	965.53345	0.53345218	321	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	19.476	19.476	2	1.4133E-05	12956	DP1063-10	141.98	94.917			5.8727	3.4839	NaN	1	0	Median	70490000	11469000	59021000	3094	321	2929	7261	15494;15495	15494		2	9606
VFSGLVSTGLK	1	0	Unmodified	1106.6336	0.63356015	137	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				19.073	19.073	2	0.0031642	11868	DP1063-7	80.688	62.426			1.1458	1.1807	NaN	1	0	Median	13590000	6737100	6852700	3095	137	2930	7262	15496;15497	15496		2	9606
VFTTQELVQAFTHAPATLEADR	0	1	Unmodified	2444.2336	0.23358835	80	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		23.48	23.48	3	4.3643E-16	17734	DP1063-9	176.11	176.11			0.81058	0.8479	NaN	1	0	Median	29697000	15450000	14248000	3096	80	2931	7263	15498;15499	15498		2	9606
VGAGAPVYLAAVLEYLTAEILELAGNAAR	0	1	Unmodified	2914.5804	0.58040896	91;122	Q93077;Q7L7L0;P04908;P16104;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8	HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1	no	no	0	0	0	5	0					1	31.906	31.906	3	2.8963E-05	25944	DP1063-10	89.297	70.8			NaN	NaN	NaN	0	0	Median	1587500	0	1587500	3097	91;122	2932	7264	15500	15500		1	9606
VGDGDLSAEEIPENEVSLR	0	1	Unmodified	2027.9647	0.96474329	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				19.649	19.649	2	5.5776E-75	12639	DP1063-7	288.29	235.82			NaN	NaN	NaN	0	0	Median	65403000	0	65403000	3098	381	2933	7265	15501;15502	15502		2	9606
VGDGDLSAEEIPENEVSLRR	0	2	Unmodified	2184.0659	0.065854319	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		2				18.383	18.383	2;3	1.5101E-07	10889	DP1063-7	141.55	100.86			NaN	NaN	NaN	0	0	Median	136150000	0	136150000	3099	381	2934	7266;7267	15503;15504	15503		2	9606
VGDVTPQVK	1	0	Unmodified	941.5182	0.51819605	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				14.489	14.489	2	0.0051853	5529	DP1063-7	125.81	93.859			NaN	NaN	NaN	0	0	Median	41213000	0	41213000	3100	365	2935	7268;7269	15505;15506;15507	15507		3	9606
VGEVTYVELLMDAEGK	1	0	Oxidation (M)	1767.8601	0.86006721	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	2	0		1				22.689	22.689	2	8.1064E-05	16614	DP1063-7	150.21	150.21			1.0467	1.0786	NaN	1	0	Median	45320000	21939000	23381000	3101	236	2936	7270	15508;15509;15510;15511	15510	289	4	9606
VGGKELLADQNLK	2	0	Unmodified	1383.7722	0.7721789	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				16.081	16.081	2	0.011848	7704	DP1063-7	134.3	95.551			NaN	NaN	NaN	0	0	Median	12066000	0	12066000	3102	381	2937	7271	15512;15513	15512		2	9606
VGGSDEEASGIPSR	0	1	Unmodified	1359.6266	0.62663688	527	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	3	0			1			15	15	2	1.0387E-10	6790	DP1063-8	180.66	151.11			NaN	NaN	NaN	0	0	Median	12460000	0	12460000	3103	527	2938	7272	15514;15515	15514		2	9606
VGGTSDVEVNEK	1	0	Unmodified	1232.5885	0.58846046	126	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			14.157	14.157	2	1.1125E-31	5647	DP1063-8	271.26	228.98			1.1513	1.1595	NaN	1	0	Median	35752000	16928000	18824000	3104	126	2939	7273	15516;15517;15518;15519	15518		4	9606
VGILLDEASGVNK	1	0	Unmodified	1313.7191	0.7190807	333	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				19.07	19.07	2	0.0026665	11838	DP1063-7	123.96	70.36			NaN	NaN	NaN	0	0	Median	19356000	0	19356000	3105	333	2940	7274	15520;15521	15520		2	9606
VGINYQPPTVVPGGDLAK	1	0	Unmodified	1823.9781	0.97814893	310;434;492	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.75	0.829			2	1	1	19.744	19.744	2;3	3.5725E-05	12788	DP1063-8	149.57	149.57			2.2457	2.7546	28.204	4	0	Linear	788850000	226620000	562230000	3106	310;434;492	2941	7275;7276;7277;7278	15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533	15528		12	9606
VGLLDCALNSVTADSEINSLPTISALK	1	0	Unmodified	2800.4528	0.45282518	497	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	2	0		1				24.993	24.993	3	0.00011925	19568	DP1063-7	83.317	55.997			NaN	NaN	NaN	0	0	Median	3699800	0	3699800	3107	497	2942	7279	15534;15535	15535		2	9606
VGLTNYAAAYCTGLLLAR	0	1	Unmodified	1926.0033	0.003317824	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		22.59	22.59	2	3.739E-48	16676	DP1063-9	231.69	188.28			13.565	14.189	NaN	1	0	Median	63835000	4141400	59694000	3108	214	2943	7280	15536;15537	15537		2	9606
VGPATPSAQVGK	1	0	Unmodified	1110.6033	0.60332266	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				14.512	14.512	2	0.027999	5677	DP1063-7	85.807	37.939			NaN	NaN	NaN	0	0	Median	19371000	0	19371000	3109	365	2944	7281	15538	15538		1	9606
VGPDVVTDPAFLVTR	0	1	Unmodified	1584.8512	0.8511575	535	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	0	0	5	0					1	21.421	21.421	2	0.00078378	15460	DP1063-10	132.03	97.942			NaN	NaN	NaN	0	0	Median	22049000	0	22049000	3110	535	2945	7282	15539;15540	15539		2	9606
VGVKEELLAVGK	2	0	Unmodified	1240.7391	0.73908786	211	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	1	0	1					17.524	17.524	2	0.039861	8016	DP1063-6	123.79	103.65			NaN	NaN	NaN	0	0	Median	29236000	0	29236000	3111	211	2946	7283	15541;15542	15542		2	9606
VGVKEEVLPVGK	2	0	Unmodified	1252.7391	0.73908786	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.117	16.117	3	0.012077	7881	DP1063-7	81.565	39.861			NaN	NaN	NaN	0	0	Median	25929000	0	25929000	3112	211	2947	7284	15543;15544	15544		2	9606
VGVNGFGR	0	1	Unmodified	804.42424	0.42423608	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		15.956	15.956	2	0.034744	7916	DP1063-9	65.672	65.672			0.73556	0.76943	NaN	1	0	Median	12246000	5670200	6576300	3113	89	2948	7285	15545	15545		1	9606
VHAALVYHK	1	0	Unmodified	1036.5818	0.58179936	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		13.141	13.141	2	0.017397	4213	DP1063-9	95.793	70.974			NaN	NaN	NaN	0	0	Median	3032700	0	3032700	3114	352	2949	7286	15546;15547	15546		2	9606
VHIEIGPDGR	0	1	Unmodified	1091.5724	0.57235688	184;239	P31943;P55795;P52597	HNRNPH1;HNRNPH2;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	4	0				1		15.839	15.839	2	0.001852	7696	DP1063-9	91.087	91.087			2.7804	2.9084	NaN	1	0	Median	58012000	15260000	42752000	3115	184;239	2950	7287	15548;15549;15550	15549		3	9606
VHIGQVIMSIR	0	1	Oxidation (M)	1267.7071	0.70707622	177	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	1	0	5	0					2	17.766	17.766	2;3	0.008086	10687	DP1063-10	58.511	34.788			5.744	4.1429	0.66366	2	0	Median	146310000	19437000	126880000	3116	177	2951	7288;7289	15551;15552;15553	15552	202	3	9606
VHKECCHGDLLECADDR	1	1	Unmodified	2112.8775	0.87754174	12	CON__P02769			yes	yes	0	0	1	1.8	0.748	2	2	1			14.348	14.348	2;3;4	1.7217E-39	5890	DP1063-8	266.07	238.39		+	NaN	NaN	NaN	0	0	Median	77501000	77501000	0	3117	12	2952	7290;7291;7292;7293;7294	15554;15555;15556;15557;15558;15559;15560;15561;15562;15563	15562		10	
VHKECCHGDLLECADDRADLAK	2	1	Unmodified	2611.1577	0.15773934	12	CON__P02769			yes	yes	0	0	2	2.44	0.956	2	2	4	1		15.446	15.446	2;3;4;5	3.0211E-53	7246	DP1063-8	243.99	227.68		+	NaN	NaN	NaN	0	0	Median	1332400000	1332400000	0	3118	12	2953	7295;7296;7297;7298;7299;7300;7301;7302;7303	15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581	15575		18	
VHLQTQQEVK	1	0	Unmodified	1208.6513	0.65133548	551	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	4	0				1		13.308	13.308	2	0.026613	4414	DP1063-9	90.709	33.531			NaN	NaN	NaN	0	0	Median	3372200	0	3372200	3119	551	2954	7304	15582	15582		1	9606
VHNEGLPAPIVR	0	1	Unmodified	1300.7252	0.72516913	6	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	2.5	0.5		2	2			16.199	16.199	2;3	3.8255E-06	8308	DP1063-8	167.93	128.06		+	NaN	NaN	NaN	0	0	Median	186260000	186260000	0	3120	6	2955	7305;7306;7307;7308	15583;15584;15585;15586;15587;15588;15589	15589		7	
VHTVVASNNGSVFSVEVDGSK	1	0	Unmodified	2131.0546	0.054561351	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0		2				18.052	18.052	2;3	3.1837E-98	10422	DP1063-7	289.61	233.84			1.0748	1.1075	NaN	1	0	Median	70521000	26007000	44514000	3121	94	2956	7309;7310	15590;15591;15592;15593	15592		4	9606
VIDRFDEGEDGEGDFLVVGSIR	0	2	Unmodified	2423.1605	0.16048299	543	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	2	0		1				21.261	21.261	2	0.045374	14801	DP1063-7	85.362	32.111			NaN	NaN	NaN	0	0	Median	0	0	0	3122	543	2957	7311	15594	15594		1	9606
VIDSSDVVVQVLDAR	0	1	Unmodified	1613.8625	0.86245047	371	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				22.061	22.061	2	1.963E-13	15845	DP1063-7	177.83	142.34			NaN	NaN	NaN	0	0	Median	18316000	0	18316000	3123	371	2958	7312	15595;15596	15596		2	9606
VIECSYTSADGQR	0	1	Unmodified	1484.6566	0.6565568	550	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		15.255	15.255	2	9.5246E-05	6927	DP1063-9	150.1	124.89			2.3678	2.4768	NaN	1	0	Median	13505000	3649100	9855700	3124	550	2959	7313	15597;15598	15598		2	9606
VIEETEER	0	1	Unmodified	1003.4822	0.48220447	250	P58107	EPPK1	Epiplakin	yes	no	0	0	0	1	0	1					13.488	13.488	2	0.0038131	3075	DP1063-6	122.13	38.376			NaN	NaN	NaN	0	0	Median	4289700	0	4289700	3125	250	2960	7314	15599;15600	15600		2	9606
VIGIDHIK	1	0	Unmodified	893.53345	0.53345218	159	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	5	0					1	15.692	15.692	2	0.026522	8123	DP1063-10	71.296	23.38			0.78183	0.46381	NaN	1	0	Median	20985000	10754000	10231000	3126	159	2961	7315	15601	15601		1	9606
VIGLQIFNIDTDR	0	1	Unmodified	1502.8093	0.80929269	428	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				22.995	22.995	2	0.0016363	17059	DP1063-7	131.43	75.001			NaN	NaN	NaN	0	0	Median	10302000	0	10302000	3127	428	2962	7316	15602	15602		1	9606
VIGNQSLVNELAFTAR	0	1	Unmodified	1730.9315	0.93153309	353	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		21.338	21.338	2	1.664E-16	15102	DP1063-9	192.4	192.4			0.99297	1.0387	NaN	1	0	Median	25946000	13599000	12347000	3128	353	2963	7317	15603;15604;15605;15606	15606		4	9606
VIGSGCNLDSAR	0	1	Unmodified	1247.5928	0.59283433	107;85	P00338;Q6ZMR3;P07864;P07195	LDHA;LDHAL6A;LDHC;LDHB	L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain	no	no	0	0	0	4	0				1		15.395	15.395	2	9.3875E-05	7112	DP1063-9	135.55	81.774			0.68445	0.71596	NaN	1	0	Median	46554000	26550000	20004000	3129	85;107	2964	7318	15607;15608;15609;15610	15610		4	9606
VIHDNFGIVEGLMTTVHAITATQK	1	0	Oxidation (M)	2610.3476	0.34757225	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	4	0				2		22.216	22.216	3;4	4.4603E-13	16198	DP1063-9	152.57	152.57			0.67896	0.69785	3.5769	2	0	Median	32209000	18971000	13238000	3130	89	2965	7319;7320	15611;15612;15613;15614;15615;15616;15617	15614	76	7	9606
VIISAPSADAPMFVMGVNHEK	1	0	2 Oxidation (M)	2244.0919	0.091874835	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	2	0	4	0				1		18.488	18.488	3	0.024531	11318	DP1063-9	44.743	44.743			0.38664	0.3974	NaN	1	0	Median	25400000	17208000	8192700	3131	89	2966	7321	15618;15619	15619	77;78	2	9606
VILDLTPNYR	0	1	Unmodified	1202.6659	0.66592292	112	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				19.753	19.753	2	0.00033512	12798	DP1063-7	99.139	59.137			1.9574	2.0316	NaN	1	0	Median	19458000	6456000	13002000	3132	112	2967	7322	15620;15621;15622;15623	15622		4	9606
VIMGEEVEPVGLMTGSGVVGVK	1	0	2 Oxidation (M)	2218.1225	0.12250626	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	2	0	1	0	1					19.512	19.512	2	0.031162	10617	DP1063-6	75.764	41.586			NaN	NaN	NaN	0	0	Median	0	0	0	3133	179	2968	7323	15624	15624	203;204	1	9606
VINEPTAAALAYGLDK	1	0	Unmodified	1644.8723	0.87228688	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				20.444	20.444	2	0.0027116	13744	DP1063-7	115.57	80.371			NaN	NaN	NaN	0	0	Median	15298000	0	15298000	3134	198	2969	7324	15625;15626	15625		2	9606
VIQVSPFLLALSGNSR	0	1	Unmodified	1699.9621	0.96210494	77	O95059	RPP14	Ribonuclease P protein subunit p14	yes	yes	0	0	0	5	0					1	23.639	23.639	2	0.0013254	18131	DP1063-10	125.03	80.419			NaN	NaN	NaN	0	0	Median	3041400	0	3041400	3135	77	2970	7325	15627;15628	15628		2	9606
VISDKDLELLLDR	1	1	Unmodified	1527.8508	0.85082315	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				21.156	21.156	3	0.00015291	14697	DP1063-7	139.74	97.275			NaN	NaN	NaN	0	0	Median	11606000	0	11606000	3136	532	2971	7326	15629;15630	15629		2	9606
VITEEEKNFK	2	0	Unmodified	1235.6398	0.63976774	174	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	4.33	0.471				2	1	14.512	14.512	2;3	5.4889E-05	6687	DP1063-10	120.99	120.99			8.0108	8.3177	11.71	2	0	Median	83687000	6795100	76892000	3137	174	2972	7327;7328;7329	15631;15632;15633;15634;15635;15636;15637	15631		7	9606
VITFANQDDYISFR	0	1	Unmodified	1687.8206	0.82058566	476	Q96G21	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4	yes	yes	0	0	0	4	0				1		21.29	21.29	2	2.4882E-18	15029	DP1063-9	221.55	180.82			NaN	NaN	NaN	0	0	Median	28603000	0	28603000	3138	476	2973	7330	15638;15639	15638		2	9606
VITIMQNPR	0	1	Oxidation (M)	1086.5856	0.5855641	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	1	0	5	0					1	15.275	15.275	2	0.00052647	7579	DP1063-10	101.28	84.508			2.3128	1.6682	NaN	1	0	Median	166520000	50642000	115880000	3139	273	2974	7331	15640;15641;15642;15643	15640	328	4	9606
VKADRDESSPYAAMLAAQDVAQR	1	2	Oxidation (M)	2507.2074	0.20744995	271	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	2	5	0					2	16.779	16.779	3;4	0.00089085	9413	DP1063-10	106.74	87.804			NaN	NaN	NaN	0	0	Median	36310000	0	36310000	3140	271	2975	7332;7333	15644;15645;15646;15647	15644	327	4	9606
VKDWVER	1	1	Unmodified	930.49232	0.49231565	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.513	14.513	2	0.0054392	4260	DP1063-6	117.16	79			0.90473	0.95546	NaN	1	0	Median	243720000	130360000	113360000	3141	355	2976	7334	15648;15649;15650;15651	15648		4	9606
VKEGVEVTDHR	1	1	Unmodified	1267.6521	0.65206377	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.736	12.736	3	0.0022145	2223	DP1063-6	78.324	37.16			1.1096	1.1719	NaN	1	0	Median	5103000	1874000	3229000	3142	38	2977	7335	15652;15653	15652		2	9606
VKGGGHVAQIYAIR	1	1	Unmodified	1467.831	0.83103118	269	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					1	15.082	15.082	3	0.0027384	7404	DP1063-10	101.72	76.001			NaN	NaN	NaN	0	0	Median	20361000	0	20361000	3143	269	2978	7336	15654;15655	15654		2	9606
VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK	2	0	Unmodified	3949.3584	0.35844324	105	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		17.935	17.935	3	2.1552E-09	10706	DP1063-9	96.158	88.021			NaN	NaN	NaN	0	0	Median	17560000	0	17560000	3144	105	2979	7337	15656;15657	15657		2	9606
VKPDVVQDKETER	2	1	Unmodified	1541.8049	0.80493559	577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	2	4	0				1		12.972	12.972	3	0.0063707	3996	DP1063-9	111.79	70.551			NaN	NaN	NaN	0	0	Median	6659600	0	6659600	3145	577	2980	7338	15658;15659	15659		2	9606
VKPLQDQNELFGK	2	0	Unmodified	1514.8093	0.80929269	349	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			1			17.063	17.063	3	0.029756	9515	DP1063-8	77.644	41.013			NaN	NaN	NaN	0	0	Median	27172000	27172000	0	3146	349	2981	7339	15660	15660		1	9606
VKYETELAMR	1	1	Oxidation (M)	1254.6278	0.62782285	100	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	1	1	4	0				1		14.937	14.937	2	0.0097804	6541	DP1063-9	65.305	48.074			1.3916	1.3161	NaN	1	0	Median	16385000	6700100	9684500	3147	100	2982	7340	15661;15662;15663;15664	15664	102	4	9606
VLAFLVLSR	0	1	Unmodified	1016.6383	0.6382516	579	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				22.333	22.333	2	0.0045299	16178	DP1063-7	128.61	95.679			NaN	NaN	NaN	0	0	Median	12957000	0	12957000	3148	579	2983	7341	15665;15666	15666		2	9606
VLALSVETDYTFPLAEK	1	0	Unmodified	1894.9928	0.99279594	98	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	5	0					1	22.657	22.657	2	0.0058092	17075	DP1063-10	103.21	61.673			NaN	NaN	NaN	0	0	Median	2055000	0	2055000	3149	98	2984	7342	15667	15667		1	9606
VLATVTKPVGGDK	2	0	Unmodified	1283.7449	0.74490152	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				2		14.36	14.36	2;3	9.6694E-09	5729	DP1063-9	171.67	108.24			10.761	11.384	NaN	1	0	Median	175820000	10909000	164910000	3150	336	2985	7343;7344	15668;15669;15670;15671	15671		4	9606
VLCAVSGPR	0	1	Unmodified	957.50659	0.5065855	422	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		15.102	15.102	2	0.051621	6724	DP1063-9	80.438	52.556			NaN	NaN	NaN	0	0	Median	14365000	0	14365000	3151	422	2986	7345	15672	15672		1	9606
VLDALVFHFLGFR	0	1	Unmodified	1532.8504	0.85036964	374	Q13895	BYSL	Bystin	yes	yes	0	0	0	3	0			2			24.839	24.839	2;3	5.8384E-05	19252	DP1063-8	148.28	118.1			NaN	NaN	NaN	0	0	Median	20244000	0	20244000	3152	374	2987	7346;7347	15673;15674;15675;15676	15674		4	9606
VLDELTLTK	1	0	Unmodified	1030.591	0.59102664	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.63	1		1		1	18.67	18.67	2	0.0022239	11923	DP1063-10	136.8	63.18		+	NaN	NaN	NaN	0	0	Median	120170000	120170000	0	3153	16	2988	7348;7349;7350	15677;15678;15679;15680;15681;15682	15678		6	9606
VLDILLEQYPALITGR	0	1	Unmodified	1813.0349	0.034935528	541	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				24.198	24.198	2	0.0068718	18616	DP1063-7	100.55	74.54			NaN	NaN	NaN	0	0	Median	3544700	0	3544700	3154	541	2989	7351	15683	15683		1	9606
VLDLVEVLVTK	1	0	Unmodified	1226.7486	0.74858991	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2.5	0.5		1	1			23.369	23.369	2	0.00023108	17513	DP1063-7	152.54	122.87			NaN	NaN	NaN	0	0	Median	25978000	0	25978000	3155	493	2990	7352;7353	15684;15685;15686	15685		3	9606
VLDPNTVFALVNYISFK	1	0	Unmodified	1939.0455	0.045500215	18	CON__P34955			yes	yes	0	0	0	3	0			2			27.052	27.052	2;3	0.006911	21802	DP1063-8	90.754	67.119		+	NaN	NaN	NaN	0	0	Median	10917000	10917000	0	3156	18	2991	7354;7355	15687;15688;15689;15690	15690		4	
VLEAAAQAAR	0	1	Unmodified	998.55089	0.55089316	525	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	4	0				1		14.652	14.652	2	0.026038	6110	DP1063-9	91.069	21.244			NaN	NaN	NaN	0	0	Median	14795000	0	14795000	3157	525	2992	7356	15691;15692	15692		2	9606
VLEDEEGSKDIELSDDPYDCIR	1	1	Unmodified	2596.1487	0.14865725	390	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	1	4	0				1		19.262	19.262	3	4.8514E-06	12384	DP1063-9	133.98	111.32			NaN	NaN	NaN	0	0	Median	20768000	0	20768000	3158	390	2993	7357	15693;15694	15694		2	9606
VLEGNEQFINAAK	1	0	Unmodified	1431.7358	0.73579339	187	P35030	PRSS3	Trypsin-3	yes	yes	0	0	0	3	1.58	1	1		1	1	17.773	17.773	2	4.4327E-11	10029	DP1063-7	193.82	151.43			NaN	NaN	NaN	0	0	Median	103210000	103210000	0	3159	187	2994	7358;7359;7360;7361	15695;15696;15697;15698;15699;15700;15701;15702	15699		8	9606
VLENAEGAR	0	1	Unmodified	957.48796	0.48795855	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				13.539	13.539	2	0.00023119	4391	DP1063-7	130.27	93.876			1.8557	1.8978	NaN	1	0	Median	58383000	19600000	38783000	3160	198	2995	7362	15703;15704;15705;15706	15706		4	9606
VLEQLIVAHFPMQSR	0	1	Oxidation (M)	1782.9451	0.94507466	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.123	20.123	3	0.051644	11409	DP1063-6	56.793	25.267			NaN	NaN	NaN	0	0	Median	7390400	0	7390400	3161	318	2996	7363	15707	15707		1	9606
VLEQLTGQTPVFSK	1	0	Unmodified	1545.8403	0.84025847	297	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	19.495	19.495	2	2.5095E-43	12999	DP1063-10	237.53	174.35			5.8796	3.488	NaN	1	0	Median	112140000	16488000	95656000	3162	297	2997	7364	15708;15709;15710;15711	15708		4	9606
VLETPQEIHTVSSEAVSLLEEVITPR	0	1	Unmodified	2875.5179	0.51786828	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				26.297	26.297	3	2.4332E-16	21010	DP1063-7	162.41	145.33			NaN	NaN	NaN	0	0	Median	6918000	0	6918000	3163	514	2998	7365	15712;15713;15714	15712		3	9606
VLFDPFELDTSVTPGR	0	1	Unmodified	1791.9043	0.90431529	0	A0A0B4J2E5;Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	no	0	0	0	1	0	1					23.947	23.947	2	0.0037371	16139	DP1063-6	110.07	67.35			NaN	NaN	NaN	0	0	Median	2181700	0	2181700	3164	0	2999	7366	15715;15716;15717;15718	15715		4	9606
VLGFSEPTVVTAALNCVGK	1	0	Unmodified	1961.0292	0.029198224	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	2	0		1				23.024	23.024	2	1.0248E-10	17063	DP1063-7	165.73	116.73			NaN	NaN	NaN	0	0	Median	11760000	0	11760000	3165	54	3000	7367	15719;15720	15719		2	9606
VLGTEAVQDPTKVEAHVR	1	1	Unmodified	1948.0378	0.037789075	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	1	2	0		1				16.401	16.401	4	0.00059928	8211	DP1063-7	109.1	86.753			NaN	NaN	NaN	0	0	Median	36519000	0	36519000	3166	54	3001	7368	15721	15721		1	9606
VLGTPVETIELTEDRR	0	2	Unmodified	1826.9738	0.97379183	179	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	1	0	1					19.079	19.079	3	0.048066	10065	DP1063-6	64.842	25.838			NaN	NaN	NaN	0	0	Median	10412000	0	10412000	3167	179	3002	7369	15722	15722		1	9606
VLHEAEGHIVTCETNTGEVYR	0	1	Unmodified	2413.1332	0.13322238	279	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					2	16.04	16.04	3;4	3.3034E-36	8582	DP1063-10	209.23	184.51			6.2175	4.4844	NaN	1	0	Median	30242000	3121900	27121000	3168	279	3003	7370;7371	15723;15724;15725;15726;15727	15727		5	9606
VLIANNGIAAVK	1	0	Unmodified	1181.7132	0.71320746	355;38	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	3	1.58	1	1		1	1	17.652	17.652	2	0.00028141	8175	DP1063-6	122.19	122.19			1.0118	1.0374	39.061	4	0	Median	611100000	291090000	320020000	3169	355;38	3004	7372;7373;7374;7375	15728;15729;15730;15731;15732;15733;15734;15735;15736;15737;15738;15739;15740;15741	15732		14	9606
VLKQVHPDTGISSK	2	0	Unmodified	1507.8358	0.83584179	61;106	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	1	5	0					1	13.616	13.616	3	0.0093261	5628	DP1063-10	82.908	55.046			NaN	NaN	NaN	0	0	Median	4488200	0	4488200	3170	61;106	3005	7376	15742;15743;15744	15742		3	9606
VLLDAPCSGTGVISK	1	0	Unmodified	1515.7967	0.79667909	212	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				18.313	18.313	2	0.0027341	10791	DP1063-7	116.24	72.587			NaN	NaN	NaN	0	0	Median	29433000	0	29433000	3171	212	3006	7377	15745;15746	15746		2	9606
VLLESEQFLTELTR	0	1	Unmodified	1676.8985	0.89850163	195	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	5	0					1	23.218	23.218	2	4.9125E-12	17646	DP1063-10	197.3	99.565			NaN	NaN	NaN	0	0	Median	6804700	0	6804700	3172	195	3007	7378	15747;15748	15748		2	9606
VLLFSQMTSMLDILMDYCHLR	0	1	3 Oxidation (M)	2633.2362	0.23617259	532	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	3	0	2	0		1				22.703	22.703	3	0.0037436	16639	DP1063-7	80.362	57.19			NaN	NaN	NaN	0	0	Median	20157000	0	20157000	3173	532	3008	7379	15749;15750	15749	607;608;609	2	9606
VLLGETGK	1	0	Unmodified	815.47527	0.4752686	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	15.285	15.285	2	0.0027133	7619	DP1063-10	116.88	57.903			5.9414	3.5246	NaN	1	0	Median	72048000	11307000	60741000	3174	275	3009	7380	15751;15752	15752		2	9606
VLLGETGKEK	2	0	Unmodified	1072.6128	0.61282471	275	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	13.77	13.77	2	6.6959E-05	5776	DP1063-10	134.77	70.198			5.8113	5.9225	NaN	1	0	Median	52793000	7634700	45159000	3175	275	3010	7381	15753;15754	15754		2	9606
VLLGPLSPYTIEFLR	0	1	Unmodified	1716.9814	0.98144339	568	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		24.75	24.75	2	0.0026897	19263	DP1063-9	116.54	90.421			NaN	NaN	NaN	0	0	Median	6419900	0	6419900	3176	568	3011	7382	15755;15756	15756		2	9606
VLLGSVSGLAGGFVGTPADLVNVR	0	1	Unmodified	2297.2743	0.27433095	551	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	4	0				2		23.788	23.788	2;3	6.768E-15	18177	DP1063-9	156.72	127.36			NaN	NaN	NaN	0	0	Median	8995300	0	8995300	3177	551	3012	7383;7384	15757;15758;15759;15760	15758		4	9606
VLLLSSPGLEELYR	0	1	Unmodified	1587.8872	0.88720866	449	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				22.64	22.64	2	1.7377E-07	16571	DP1063-7	156.58	113.28			NaN	NaN	NaN	0	0	Median	13693000	0	13693000	3178	449	3013	7385	15761;15762	15762		2	9606
VLNHFSIMQQR	0	1	Oxidation (M)	1387.7031	0.70305348	190	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	1	0	3	0			1			15.943	15.943	3	0.012708	8031	DP1063-8	77.744	41.8			NaN	NaN	NaN	0	0	Median	42944000	0	42944000	3179	190	3014	7386	15763;15764	15764	210	2	9606
VLNNFISNQK	1	0	Unmodified	1175.6299	0.62987176	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		17.263	17.263	2	0.0014378	9326	DP1063-7	160.88	132.37			NaN	NaN	NaN	0	0	Median	154120000	0	154120000	3180	211	3015	7387;7388;7389	15765;15766;15767;15768;15769;15770	15767		6	9606
VLNSYWVGEDSTYK	1	0	Unmodified	1659.7781	0.77805214	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	19.482	19.482	2	7.3815E-11	13016	DP1063-10	182.41	134.47			NaN	NaN	NaN	0	0	Median	97791000	0	97791000	3181	257	3016	7390	15771;15772	15772		2	9606
VLNTNIDGR	0	1	Unmodified	1000.5302	0.53015772	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	15.456	15.456	2	2.7127E-06	7764	DP1063-10	141.52	103.36			3.1699	2.2863	NaN	1	0	Median	116620000	27829000	88795000	3182	273	3017	7391	15773;15774;15775;15776	15774		4	9606
VLPSITTEILK	1	0	Unmodified	1212.7329	0.73293985	188	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		20.688	20.688	2	0.0026831	14313	DP1063-9	83	63.223			1.4787	1.5198	NaN	1	0	Median	7264000	2663000	4600900	3183	188	3018	7392	15777	15777		1	9606
VLPYPFTHHWQFER	0	1	Unmodified	1855.9158	0.91582345	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				19.654	19.654	3	0.035362	12700	DP1063-7	71.879	51.83			NaN	NaN	NaN	0	0	Median	10317000	0	10317000	3184	504	3019	7393	15778	15778		1	9606
VLQAELK	1	0	Unmodified	799.48035	0.48035398	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				15.273	15.273	1;2	0.00029843	5182	DP1063-6	128.86	48.399			1.9399	1.9889	91.578	2	0	Median	399650000	45707000	353940000	3185	355	3020	7394;7395;7396	15779;15780;15781;15782;15783;15784;15785	15779		7	9606
VLQALEGLK	1	0	Unmodified	969.58588	0.58588168	200	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	18.678	18.678	2	0.0011142	11954	DP1063-10	94.302	35.321			6.4186	3.8077	NaN	1	0	Median	31392000	4042500	27350000	3186	200	3021	7397	15786;15787	15787		2	9606
VLQDLVMDILR	0	1	Oxidation (M)	1329.7326	0.73262227	242	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	2	0		1				23.538	23.538	2	0.010147	17751	DP1063-7	123.75	65.072			NaN	NaN	NaN	0	0	Median	10229000	0	10229000	3187	242	3022	7398	15788;15789	15789	302	2	9606
VLQSALAAIR	0	1	Unmodified	1040.6342	0.63422886	350	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		18.41	18.41	2	0.026038	11176	DP1063-9	91.069	52.277			NaN	NaN	NaN	0	0	Median	37667000	0	37667000	3188	350	3023	7399	15790;15791	15791		2	9606
VLSAPPHFHFGQTNR	0	1	Unmodified	1706.8641	0.86412223	175	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			16.809	16.809	4	0.025803	9171	DP1063-8	50.843	50.843			0.99696	1.033	NaN	1	0	Median	49379000	24251000	25129000	3189	175	3024	7400	15792	15792		0	9606
VLSIGDGIAR	0	1	Unmodified	999.57129	0.57129425	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.072	18.072	2	6.3662E-05	10628	DP1063-8	124.08	78.128			0.84064	0.87105	NaN	1	0	Median	61130000	33815000	27315000	3190	170	3025	7401	15793;15794;15795	15793		3	9606
VLTELLEQERK	1	1	Unmodified	1356.7613	0.76127986	365	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	1	0	1					17.72	17.72	2	0.013818	8295	DP1063-6	118.03	79.466			NaN	NaN	NaN	0	0	Median	6036800	0	6036800	3191	365	3026	7402	15796	15796		1	9606
VLTPELYAELR	0	1	Unmodified	1302.7184	0.71835242	135	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		20.482	20.482	2	0.026027	14002	DP1063-9	90.108	43.217			NaN	NaN	NaN	0	0	Median	2450300	0	2450300	3192	135	3027	7403	15797	15797		1	9606
VLTQPSSVSGSLGQR	0	1	Unmodified	1514.8053	0.80526994	4	CON__ENSEMBL:ENSBTAP00000014147			yes	yes	0	0	0	5	0					1	16.706	16.706	2	1.9118E-05	9332	DP1063-10	149.49	82.53		+	NaN	NaN	NaN	0	0	Median	14977000	14977000	0	3193	4	3028	7404	15798;15799	15799		2	
VLTVINQTQK	1	0	Unmodified	1142.6659	0.66592292	208	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	5	0					1	16.029	16.029	2	1.6792E-16	8505	DP1063-10	186.41	149.35			10.433	6.1894	NaN	1	0	Median	177340000	12959000	164390000	3194	208	3029	7405	15800;15801;15802;15803;15804	15801		5	9606
VLTVINQTQKENLR	1	1	Unmodified	1654.9366	0.93661847	208	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	1	5	0					1	16.234	16.234	3	9.0392E-11	8834	DP1063-10	172.09	120.02			NaN	NaN	NaN	0	0	Median	37531000	0	37531000	3195	208	3030	7406	15805;15806	15805		2	9606
VLTVINQTQKENLRK	2	1	Unmodified	1783.0316	0.031581485	208	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	2	5	0					1	15.025	15.025	3	0.013103	7399	DP1063-10	96.734	81.613			NaN	NaN	NaN	0	0	Median	6574400	0	6574400	3196	208	3031	7407	15807;15808	15808		2	9606
VLVLAPTR	0	1	Unmodified	867.55419	0.55418762	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				17.18	17.18	2	0.029618	9225	DP1063-7	95.352	59.859			NaN	NaN	NaN	0	0	Median	34707000	0	34707000	3197	490	3032	7408	15809	15809		1	9606
VLYDAEISQIHQSVTDTNVILSMDNSR	0	1	Oxidation (M)	3063.4819	0.48189348	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1.5	0.5	1	1				21.333	21.333	3	3.5732E-07	14857	DP1063-7	105.82	79.613		+	NaN	NaN	NaN	0	0	Median	51372000	51372000	0	3198	20	3033	7409;7410	15810;15811	15811	18	2	9606
VLYLLELYCEDK	1	0	Unmodified	1556.7796	0.77963204	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					23.522	23.522	2	0.029897	15727	DP1063-6	84.17	28.603			NaN	NaN	NaN	0	0	Median	1843300	0	1843300	3199	73	3034	7411	15812	15812		1	9606
VMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGR	0	1	4 Oxidation (M)	4258.1007	0.10068874	236	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	4	0	2	0		1				24.526	24.526	3	8.106599999999999E-19	18973	DP1063-7	86.168	86.168			0.54727	0.56779	NaN	1	0	Median	16776000	10466000	6309800	3200	236	3035	7412	15813;15814;15815;15816	15815	290;291;292;293	4	9606
VMEKPSPLLVGR	1	1	Oxidation (M)	1340.7486	0.74860669	362	Q13283;Q9UN86	G3BP1;G3BP2	Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2	yes	no	0	1	1	3	0			1			15.821	15.821	3	0.033231	7826	DP1063-8	66.498	24.854			NaN	NaN	NaN	0	0	Median	0	0	0	3201	362	3036	7413	15817	15817		1	9606
VMFENPDFQVDEESEEFR	0	1	Oxidation (M)	2261.9423	0.94229329	497	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	1	0	1.67	0.471	1	2				20.749	20.749	2	6.3587E-33	12289	DP1063-6	217.12	192.62			NaN	NaN	NaN	0	0	Median	17408000	0	17408000	3202	497	3037	7414;7415;7416	15818;15819;15820;15821	15819	578	4	9606
VMIPVPAGVEDGQTVR	0	1	Oxidation (M)	1682.8662	0.86615564	473	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	1	0	4	0				2		18.941	18.941	2	0.000158	11896	DP1063-9	122.51	67.11			NaN	NaN	NaN	0	0	Median	0	0	0	3203	473	3038	7417;7418	15822;15823	15822	546	2	9606
VMLGETNPADSKPGTIR	1	1	Oxidation (M)	1800.904	0.90399771	58	O60361;P22392;P15531	NME2P1;NME2;NME1	Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A	yes	no	0	1	1	5	0					1	15.792	15.792	3	0.00045437	8259	DP1063-10	87.088	87.088			0.82842	0.81756	NaN	1	0	Median	20293000	11421000	8872200	3204	58	3039	7419	15824;15825	15825	48	2	9606
VMLYPSRI	0	1	Oxidation (M)	993.53174	0.53173762	150	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	1	1	5	0					1	18.184	18.184	2	0.02332	11793	DP1063-10	57.281	39.295			10.018	7.2255	NaN	1	0	Median	83450000	7998200	75451000	3205	150	3040	7420	15826	15826	178	0	9606
VMQQQQQTTQQQLPQK	1	0	Oxidation (M)	1956.9687	0.96872323	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2.75	0.829		2	1	1		13.911	13.911	2;3	7.3064E-189	4830	DP1063-7	352.15	352.15			0.77521	0.7988	15.749	3	0	Plateau	55659000	32619000	23040000	3206	406	3041	7421;7422;7423;7424	15827;15828;15829;15830;15831;15832;15833;15834;15835;15836;15837;15838;15839;15840;15841	15829	504	15	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	1	0	Oxidation (M)	3301.5555	0.55546913	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2	0		1				18.106	18.106	3	8.2413999999999995E-22	10446	DP1063-7	148.34	125.67			NaN	NaN	NaN	0	0	Median	37214000	0	37214000	3207	381	3042	7425	15842;15843;15844;15845	15842	479	4	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	2	0	Oxidation (M)	3429.6504	0.65043215	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2	0		1				17.22	17.22	4	1.7575E-18	9286	DP1063-7	135.91	114.45			NaN	NaN	NaN	0	0	Median	62396000	0	62396000	3208	381	3043	7426	15846;15847	15846	479	2	9606
VNDTIQIDLETGK	1	0	Unmodified	1444.7409	0.74093835	281	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		18.998	18.998	2	4.8613E-10	12016	DP1063-9	179.35	119.19			NaN	NaN	NaN	0	0	Median	14409000	0	14409000	3209	281	3044	7427	15848;15849	15849		2	9606
VNILEVASGAVLR	0	1	Unmodified	1339.7823	0.78234966	348	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					22.8	22.8	2	0.0092168	14822	DP1063-6	102.53	54.44			NaN	NaN	NaN	0	0	Median	4364400	0	4364400	3210	348	3045	7428	15850	15850		1	9606
VNNADDFPNLFR	0	1	Unmodified	1420.6735	0.67352749	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.165	21.165	2	2.4832E-54	12715	DP1063-6	247.51	218.79			0.87403	0.88518	NaN	1	0	Median	162060000	83282000	78775000	3211	355	3046	7429	15851;15852;15853	15853		3	9606
VNNSSLIGVGYTQTLRPGVK	1	1	Unmodified	2102.1484	0.14840216	210	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	1	4	0				1		18.42	18.42	3	1.9979E-05	11184	DP1063-9	134.21	111.56			NaN	NaN	NaN	0	0	Median	13867000	0	13867000	3212	210	3047	7430	15854;15855	15854		2	9606
VNQAIWLLCTGAR	0	1	Unmodified	1500.7871	0.78711746	218	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	21.359	21.359	2	9.5141E-11	15416	DP1063-10	186.87	136.68			NaN	NaN	NaN	0	0	Median	30924000	0	30924000	3213	218	3048	7431	15856;15857	15856		2	9606
VNTLIRPDGEK	1	1	Unmodified	1240.6776	0.67755023	283	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					2	14.713	14.713	2;3	5.8018E-05	6945	DP1063-10	181.87	142.03			12.018	11.86	NaN	1	0	Median	89574000	6658700	82915000	3214	283	3049	7432;7433	15858;15859;15860;15861	15861		4	9606
VNTLIRPDGEKK	2	1	Unmodified	1368.7725	0.77251325	283	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	2	5	0					1	13.541	13.541	3	0.01518	5494	DP1063-10	65.895	44.595			11.597	11.323	NaN	1	0	Median	36903000	2753700	34149000	3215	283	3050	7434	15862	15862		1	9606
VPAGNWVLIEGVDQPIVK	1	0	Unmodified	1933.0673	0.067298289	391	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				22.275	22.275	2	6.1441E-06	16135	DP1063-7	141.73	107.34			NaN	NaN	NaN	0	0	Median	7761900	0	7761900	3216	391	3051	7435	15863;15864	15864		2	9606
VPAHGHPVIER	0	1	Unmodified	1210.6571	0.65708956	530	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3	0			2			12.721	12.721	3	0.014009	3861	DP1063-8	109.16	72.571			NaN	NaN	NaN	0	0	Median	0	0	0	3217	530	3052	7436;7437	15865;15866	15865		2	9606
VPAPVTMDSFFFGCELSGHTR	0	1	Oxidation (M)	2370.0773	0.077287403	70	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	1	0	5	0					3	20.95	20.95	2;3	7.4083E-73	14883	DP1063-10	270.95	249.27			NaN	NaN	NaN	0	0	Median	69292000	0	69292000	3218	70	3053	7438;7439;7440	15867;15868;15869;15870	15868	58	4	9606
VPAPVTMDSFFFGCELSGHTR	0	1	Unmodified	2354.0824	0.082372781	70	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	5	0					1	22.465	22.465	3	1.8602E-44	16746	DP1063-10	225.86	182.32			NaN	NaN	NaN	0	0	Median	7380700	0	7380700	3219	70	3053	7441	15871;15872	15871		2	9606
VPEWVDTVK	1	0	Unmodified	1071.5601	0.56006086	200	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	18.528	18.528	2	0.0078735	11749	DP1063-10	115.7	115.7			NaN	NaN	NaN	0	0	Median	15496000	0	15496000	3220	200	3054	7442	15873;15874	15874		2	9606
VPINDVLAEDKILEGTETTK	2	0	Unmodified	2184.1525	0.15254406	320	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	1	4	0				1		20.149	20.149	3	0.0075187	13621	DP1063-9	84.436	53.139			NaN	NaN	NaN	0	0	Median	8070100	0	8070100	3221	320	3055	7443	15875	15875		1	9606
VPLLLEEQGVVDYFLR	0	1	Unmodified	1889.0299	0.02985015	147	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	3	0			1			25.701	25.701	2	0.0025309	20298	DP1063-8	89.356	89.356			1.62	1.6786	NaN	1	0	Median	5578600	1997400	3581200	3222	147	3056	7444	15876	15876		1	9606
VPLSEFDFSWSK	1	0	Unmodified	1440.6925	0.6925316	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2	0		1				22.391	22.391	2	9.8243E-13	16272	DP1063-7	214.71	186.93			NaN	NaN	NaN	0	0	Median	34653000	0	34653000	3223	537	3057	7445	15877;15878	15878		2	9606
VPPAINQFTQALDR	0	1	Unmodified	1568.8311	0.83109076	280	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				2		21.046	21.046	2;3	7.877E-12	14673	DP1063-9	190.34	136.89			9.2244	9.6491	NaN	1	0	Median	126880000	11669000	115220000	3224	280	3058	7446;7447	15879;15880;15881;15882	15882		4	9606
VPPPPPIAR	0	1	Unmodified	942.56509	0.56508666	111	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		15.563	15.563	2	0.0096031	7359	DP1063-9	81.297	53.19			1.6874	1.7651	NaN	1	0	Median	59354000	20703000	38651000	3225	111	3059	7448	15883;15884;15885	15884		3	9606
VPQAQPTKPALK	2	0	Unmodified	1276.7503	0.75032125	82	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	3	0			1			13.667	13.667	3	0.0019342	4971	DP1063-8	78.548	65.917			5.6254	5.476	NaN	1	0	Median	20015000	2933200	17082000	3226	82	3060	7449	15886;15887	15886		2	9606
VPQVSTPTLVEVSR	0	1	Unmodified	1510.8355	0.83550744	12	CON__P02769			no	no	0	0	0	2.25	1.05	14	10	16	3	1	23.867	23.867	2;3	2.2701E-14	11336	DP1063-7	210.95	210.95		+	NaN	NaN	NaN	0	0	Median	1407600000	1407600000	0	3227	12	3061	7450;7451;7452;7453;7454;7455;7456;7457;7458;7459;7460;7461;7462;7463;7464;7465;7466;7467;7468;7469;7470;7471;7472;7473;7474;7475;7476;7477;7478;7479;7480;7481;7482;7483;7484;7485;7486;7487;7488;7489;7490;7491;7492;7493	15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938;15939;15940;15941;15942	15907		55	
VPSVPETELTDQAWLPAGVR	0	1	Unmodified	2164.1164	0.11643333	520	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	2	0		1				22.095	22.095	2	3.5182999999999997E-26	15934	DP1063-7	197.19	159.82			NaN	NaN	NaN	0	0	Median	9553400	0	9553400	3228	520	3062	7494	15943;15944	15944		2	9606
VPTANVSVVDLTCR	0	1	Unmodified	1529.7872	0.78717704	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		19.13	19.13	2	1.498E-15	12165	DP1063-9	187.58	161.53			0.65664	0.68687	NaN	1	0	Median	53924000	35216000	18708000	3229	89	3063	7495	15945;15946;15947;15948	15946		4	9606
VPYPVFESNPEFLYVEGLPEGIPFR	0	1	Unmodified	2894.4531	0.45308318	316	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				25.608	25.608	2	0.0010684	20275	DP1063-7	93.424	69.944			NaN	NaN	NaN	0	0	Median	3587500	3587500	0	3230	316	3064	7496	15949;15950	15949		2	9606
VQAERPDTMLGVVCGALHVADVSLR	0	2	Oxidation (M)	2708.3738	0.37380377	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	2	2				20.609	20.609	3;4	3.6141999999999996E-28	12032	DP1063-6	183.85	164.79			0.84637	0.8608	8.8541	4	0	Linear	988280000	504050000	484230000	3231	355	3065	7497;7498;7499;7500	15951;15952;15953;15954;15955;15956;15957;15958;15959;15960;15961;15962	15957	456	12	9606
VQAERPDTMLGVVCGALHVADVSLR	0	2	Unmodified	2692.3789	0.37888915	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					22.862	22.862	3	1.6805E-12	14881	DP1063-6	150.73	135.68			0.77376	0.78719	NaN	1	0	Median	4641600	2439300	2202300	3232	355	3065	7501	15963;15964	15963		2	9606
VQAGAYPTEK	1	0	Unmodified	1062.5346	0.53457439	456	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		14.027	14.027	2	0.013484	5264	DP1063-9	104.01	60.767			NaN	NaN	NaN	0	0	Median	15300000	0	15300000	3233	456	3066	7502	15965;15966	15966		2	9606
VQALEEANNDLENK	1	0	Unmodified	1585.7584	0.75837933	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					16.985	16.985	2	5.1248E-14	7367	DP1063-6	206.36	160.45		+	NaN	NaN	NaN	0	0	Median	11105000	11105000	0	3234	19	3067	7503	15967;15968;15969	15968		3	9606
VQAQVIQETIVPK	1	0	Unmodified	1451.8348	0.83477916	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				18.306	18.306	2	0.0014481	10751	DP1063-7	111.86	111.86			0.73093	0.75317	NaN	1	0	Median	52511000	28724000	23786000	3235	406	3068	7504	15970;15971;15972	15970		3	9606
VQDDEVGDGTTSVTVLAAELLR	0	1	Unmodified	2287.1543	0.15433498	317	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			24.726	24.726	2	5.1689E-23	19189	DP1063-8	195.92	168.24			2.2911	2.374	NaN	1	0	Median	15664000	5028900	10635000	3236	317	3069	7505	15973;15974;15975	15973		3	9606
VQEQVHTLLSQDQAQAAR	0	1	Unmodified	2021.029	0.029015303	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			16.469	16.469	3	0.0043615	8715	DP1063-8	65.47	65.47			0.87792	0.90968	NaN	1	0	Median	51679000	28272000	23407000	3237	344	3070	7506	15976	15976		1	9606
VQIAVANAQELLQR	0	1	Unmodified	1551.8733	0.87328993	586	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	5	0					1	20.18	20.18	2	0.0023741	13992	DP1063-10	120.77	84.086			NaN	NaN	NaN	0	0	Median	6273600	0	6273600	3238	586	3071	7507	15977;15978	15977		2	9606
VQQAELHTGSLPR	0	1	Unmodified	1434.7579	0.75792582	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.5	2	2		1	1	15.268	15.268	2;3	1.7037E-99	5250	DP1063-6	289.59	236			0.89909	0.898	25.65	6	0	Median	2839700000	1481399999.9999998	1358300000	3239	355	3072	7508;7509;7510;7511;7512;7513	15979;15980;15981;15982;15983;15984;15985;15986;15987;15988;15989;15990;15991;15992;15993;15994;15995;15996	15987		18	9606
VQQTVQDLFGR	0	1	Unmodified	1289.6728	0.67279921	198	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				19.305	19.305	2	5.5439E-08	12157	DP1063-7	167.12	108.53			1.9368	1.9777	NaN	1	0	Median	64461000	24622000	39839000	3240	198	3073	7514	15997;15998	15998		2	9606
VQSLQATFGTFESILR	0	1	Unmodified	1795.9468	0.9468488	344	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			24.306	24.306	2	4.8371E-24	18630	DP1063-8	205.02	168.7			2.3475	2.4324	NaN	1	0	Median	34018000	11449000	22569000	3241	344	3074	7515	15999;16000;16001	16001		3	9606
VQTLEELEELGKEECFQNK	2	0	Unmodified	2322.1049	0.10494194	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	1	2	0		1				20.6	20.6	3	0.0033858	13898	DP1063-7	95.954	78.17			NaN	NaN	NaN	0	0	Median	13678000	0	13678000	3242	504	3075	7516	16002	16002		1	9606
VQVEYKGETK	2	0	Unmodified	1179.6136	0.61355299	128	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	2.67	0.471		1	2			13.387	13.387	2;3	0.0032408	4689	DP1063-8	114.97	85.042			NaN	NaN	NaN	0	0	Median	19424000	6750100	12674000	3243	128	3076	7517;7518;7519	16003;16004;16005;16006	16005		4	9606
VQVKEEPSAVK	2	0	Unmodified	1212.6714	0.67140222	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				13.285	13.285	3	0.0081456	2815	DP1063-6	92.866	65.537			NaN	NaN	NaN	0	0	Median	16804000	0	16804000	3244	211	3077	7520;7521	16007;16008;16009	16007		3	9606
VQVSYKGETK	2	0	Unmodified	1137.603	0.60298831	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			13.335	13.335	3	0.0030913	4620	DP1063-8	117.02	83.832			NaN	NaN	NaN	0	0	Median	1823100	0	1823100	3245	124	3078	7522	16010;16011	16011		2	9606
VREEEIEVDSR	0	2	Unmodified	1359.663	0.66302238	387	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	1	2	0		1				14.74	14.74	2	0.00015073	5950	DP1063-7	156.01	119.59			NaN	NaN	NaN	0	0	Median	33830000	0	33830000	3246	387	3079	7523	16012	16012		1	9606
VRPGFCFHLCSR	0	2	Unmodified	1534.7286	0.72855672	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	2	0		1				17.135	17.135	3	0.012077	9233	DP1063-7	81.565	53.799			NaN	NaN	NaN	0	0	Median	17540000	0	17540000	3247	345	3080	7524	16013	16013		1	9606
VSALNSVHCEHVEDEGESR	0	1	Unmodified	2152.9444	0.94435897	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.1	0.831	3	3	4			14.863	14.863	2;3;4	2.0108E-196	4718	DP1063-6	349.54	338.43			0.97934	0.98341	4.8619	8	0	Median	2332800000	1229800000	1103000000	3248	355	3081	7525;7526;7527;7528;7529;7530;7531;7532;7533;7534	16014;16015;16016;16017;16018;16019;16020;16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032;16033;16034;16035;16036;16037;16038;16039;16040;16041;16042;16043;16044;16045;16046;16047;16048	16022		35	9606
VSALNSVHCEHVEDEGESRYK	1	1	Unmodified	2444.1027	0.10265053	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.995	14.995	4	3.8887E-07	4903	DP1063-6	132.79	132.79			1.0035	1.0597	NaN	1	0	Median	23184000	9862200	13322000	3249	355	3082	7535	16049;16050;16051;16052	16050		4	9606
VSEFNVSSEGSGEK	1	0	Unmodified	1454.6525	0.65251728	504	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				15.963	15.963	2	0.022179	7685	DP1063-7	86.014	49.697			NaN	NaN	NaN	0	0	Median	11705000	0	11705000	3250	504	3083	7536	16053	16053		1	9606
VSELKEELKK	3	0	Unmodified	1201.6918	0.69180331	330	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	2	0		1				13.415	13.415	3	0.022801	4201	DP1063-7	67.726	47.519			5.9257	6.195	NaN	1	0	Median	18880000	3019800	15860000	3251	330	3084	7537	16054	16054		1	9606
VSFELFADK	1	0	Unmodified	1054.5335	0.53351176	299	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	5	0					1	20.942	20.942	2	0.0071304	14910	DP1063-10	118.5	76.843			NaN	NaN	NaN	0	0	Median	5621500	5621500	0	3252	299	3085	7538	16055;16056	16056		2	9606
VSFELFADKVPK	2	0	Unmodified	1378.7497	0.74965254	299	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	5	0					2	19.968	19.968	2;3	0.0022723	13662	DP1063-10	95.483	72.164			0.61014	0.62182	41.781	2	0	Median	20514000	13456000	7058500	3253	299	3086	7539;7540	16057;16058;16059;16060	16059		4	9606
VSFYQLSHFLQCK	1	0	Unmodified	1655.813	0.81299786	143	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	2	0		1				21.57	21.57	3	0.035875	15199	DP1063-7	71.241	36.473			NaN	NaN	NaN	0	0	Median	7902200	0	7902200	3254	143	3087	7541	16061	16061		1	9606
VSGNPQVHIK	1	0	Unmodified	1077.5931	0.59309232	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				13.428	13.428	2	0.0060093	4190	DP1063-7	128.12	92.765			NaN	NaN	NaN	0	0	Median	8735800	0	8735800	3255	211	3088	7542	16062;16063	16062		2	9606
VSGTLDTPEK	1	0	Unmodified	1045.5292	0.52915466	508	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	4	0				1		14.268	14.268	2	0.0048016	5578	DP1063-9	131.5	68.845			NaN	NaN	NaN	0	0	Median	8174500	0	8174500	3256	508	3089	7543	16064;16065	16065		2	9606
VSGVECMIIANDATVK	1	0	Oxidation (M)	1721.8328	0.8328066	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	4	0.816			1	1	1	18.067	18.067	2;3	0.0002999	10650	DP1063-9	140.01	116.63			0.95686	1.0172	41.336	3	0	Plateau	114110000	59002000	55110000	3257	524	3090	7544;7545;7546	16066;16067;16068;16069;16070;16071;16072;16073;16074;16075	16073	600	10	9606
VSGVECMIIANDATVK	1	0	Unmodified	1705.8379	0.83789198	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.76	19.76	2	2.1484E-34	12827	DP1063-8	226.42	226.42			1.1037	1.1116	NaN	1	0	Median	246840000	104400000	142430000	3258	524	3090	7547	16076;16077;16078;16079;16080	16078		5	9606
VSIAPSQR	0	1	Unmodified	856.47667	0.47666558	54	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	2	0		1				14.09	14.09	2	0.01037	5071	DP1063-7	153.73	101.09			NaN	NaN	NaN	0	0	Median	23274000	0	23274000	3259	54	3091	7548	16081;16082	16081		2	9606
VSISEGDDKIEYR	1	1	Unmodified	1509.7311	0.73110195	160	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		16.433	16.433	3	3.1709E-11	8531	DP1063-9	187.85	145.43			NaN	NaN	NaN	0	0	Median	69207000	0	69207000	3260	160	3092	7549	16083;16084;16085	16085		3	9606
VSIVNQYGK	1	0	Unmodified	1006.5447	0.54474515	512	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	4	0				1		15.896	15.896	2	0.045781	7805	DP1063-9	82.241	50.305			NaN	NaN	NaN	0	0	Median	6565100	0	6565100	3261	512	3093	7550	16086	16086		1	9606
VSLDVNHFAPDELTVK	1	0	Unmodified	1782.9152	0.91521432	90	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	19.825	19.825	3	0.00055554	13481	DP1063-10	103.88	103.88			1.1752	0.69719	NaN	1	0	Median	14618000	5415000	9202600	3262	90	3094	7551	16087;16088;16089;16090	16087		4	9606
VSLLNEQFLPLIR	0	1	Unmodified	1540.8977	0.89771377	517	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					23.773	23.773	2	6.6005E-11	15954	DP1063-6	190.86	139.58			NaN	NaN	NaN	0	0	Median	3387700	0	3387700	3263	517	3095	7552	16091;16092	16091		2	9606
VSVHVIEGDHR	0	1	Unmodified	1246.6418	0.64183343	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				14.043	14.043	3	0.004308	3747	DP1063-6	73.9	58.271			1.3572	1.4136	6.7997	2	0	Median	16866000	6511100	10355000	3264	224	3096	7553;7554	16093;16094;16095;16096	16093		4	9606
VSWDSVLSAEQTGR	0	1	Unmodified	1533.7423	0.74233534	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.1	0.402		27	1	1		28.089	28.089	2	5.2809E-84	13802	DP1063-7	280.38	225.84			53.193	52.413	NaN	1	0	Median	800110000	9287900	790830000	3265	418	3097	7555;7556;7557;7558;7559;7560;7561;7562;7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577;7578;7579;7580;7581;7582;7583	16097;16098;16099;16100;16101;16102;16103;16104;16105;16106;16107;16108;16109;16110;16111;16112;16113;16114;16115;16116;16117;16118;16119;16120;16121;16122;16123;16124;16125;16126;16127;16128;16129;16130;16131;16132;16133;16134;16135;16136;16137	16098		41	9606
VTAIHIDPATHR	0	1	Unmodified	1329.7153	0.71533272	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					14.703	14.703	3	0.0004994	4539	DP1063-6	92.19	63.958			1.1115	1.1579	NaN	1	0	Median	16353000	7609900	8743200	3266	224	3098	7584	16138;16139;16140;16141	16140		4	9606
VTEDTSSVLR	0	1	Unmodified	1105.5615	0.56151742	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.5	1.12		1	1	1	1	15.571	15.571	2	4.2221E-12	7041	DP1063-7	178.94	153.38			1.0701	1.0862	22.701	4	0	Median	600970000	283680000	317280000	3267	94	3099	7585;7586;7587;7588	16142;16143;16144;16145;16146;16147;16148;16149;16150;16151;16152;16153;16154;16155;16156;16157;16158	16147		17	9606
VTFGLNR	0	1	Unmodified	805.44464	0.44463717	381	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1		1		1		17.164	17.164	2	0.039293	9221	DP1063-7	94.163	57.135			NaN	NaN	NaN	0	0	Median	90928000	0	90928000	3268	381	3100	7589;7590	16159;16160;16161	16160		3	9606
VTFSEDDEIINPEDVDPSVGR	0	1	Unmodified	2332.0707	0.070664925	352	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		21.241	21.241	2	8.5489E-18	15007	DP1063-9	174.62	152.39			NaN	NaN	NaN	0	0	Median	17468000	0	17468000	3269	352	3101	7591	16162;16163;16164	16163		3	9606
VTGEADVEFATHEDAVAAMSK	1	0	Oxidation (M)	2192.9896	0.98957783	184	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	4	0				1		17.539	17.539	3	8.6331E-07	9943	DP1063-9	123.43	71.745			1.7587	1.8076	NaN	1	0	Median	24766000	11312000	13454000	3270	184	3102	7592	16165;16166;16167;16168	16165	207	4	9606
VTGEADVEFATHEEAVAAMSK	1	0	Oxidation (M)	2207.0052	0.005227897	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				2		18.211	18.211	2;3	3.6625E-09	10839	DP1063-9	153.04	153.04			3.6756	3.7779	NaN	1	0	Median	60109000	10126000	49983000	3271	239	3103	7593;7594	16169;16170;16171;16172;16173	16169	296	5	9606
VTIAQGGVLPNIQAVLLPK	1	0	Unmodified	1930.1615	0.16153303	91;122	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	5	0					10	24.485	24.485	2;3	5.2821E-37	17835	DP1063-10	208.85	208.85			2.7774	1.6477	3.9156	2	0	Median	460190000	114000000	346190000	3272	91;122	3104	7595;7596;7597;7598;7599;7600;7601;7602;7603;7604	16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193	16181		20	9606
VTLTSEEEAR	0	1	Unmodified	1133.5564	0.55643205	85	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		15.054	15.054	2	0.00033884	6678	DP1063-9	105.52	59.548			0.86524	0.90507	NaN	1	0	Median	18158000	9718600	8439300	3273	85	3105	7605	16194;16195;16196;16197	16196		4	9606
VTMQNLNDR	0	1	Oxidation (M)	1105.5186	0.51860675	16;9	CON__P13645;P13645;CON__P02535-1;CON__A2A4G1;CON__P08779;Q7Z3Y7;CON__Q7Z3Y7;P08779;CON__Q148H6;CON__Q3ZAW8;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8;CON__Q7Z3Z0;CON__Q9Z2K1;CON__Q7Z3Y9;Q7Z3Y9;CON__P02533;P02533	KRT10;KRT28;KRT16;KRT25;KRT27;KRT26;KRT14	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14	no	no	0	1	0	2.5	1.5	1			1		13.212	13.212	2	0.014004	4236	DP1063-9	110.41	73.647		+	NaN	NaN	NaN	0	0	Median	42410000	42410000	0	3274	16;9	3106	7606;7607	16198;16199;16200;16201	16200	3	4	9606
VTMQNLNDR	0	1	Unmodified	1089.5237	0.52369213	16;9	CON__P13645;P13645;CON__P02535-1;CON__A2A4G1;CON__P08779;Q7Z3Y7;CON__Q7Z3Y7;P08779;CON__Q148H6;CON__Q3ZAW8;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8;CON__Q7Z3Z0;CON__Q9Z2K1;CON__Q7Z3Y9;Q7Z3Y9;CON__P02533;P02533	KRT10;KRT28;KRT16;KRT25;KRT27;KRT26;KRT14	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14	no	no	0	0	0	2.5	1.5	1			1		15.389	15.389	2	0.0079279	5426	DP1063-6	115.49	52.836		+	NaN	NaN	NaN	0	0	Median	24413000	24413000	0	3275	16;9	3106	7608;7609	16202;16203;16204;16205	16203		4	9606
VTQDELKEVFEDAAEIR	1	1	Unmodified	1990.9848	0.98475045	155	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.764		4	1	1		22.797	22.797	2;3	3.0092E-99	16009	DP1063-7	311	194.26			16.662	17.447	NaN	1	0	Median	465540000	11520000	454020000	3276	155	3107	7610;7611;7612;7613;7614;7615	16206;16207;16208;16209;16210;16211;16212;16213;16214;16215;16216;16217	16210		12	9606
VTQSNFAVGYK	1	0	Unmodified	1212.6139	0.61388734	158	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	4	0				1		16.65	16.65	2	0.00017101	8804	DP1063-9	118.26	92.326			1.6996	1.7469	NaN	1	0	Median	13319000	6176100	7143000	3277	158	3108	7616	16218;16219	16218		2	9606
VTSEELHYFVQNHFTSAR	0	1	Unmodified	2164.0338	0.033766329	162	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				2		19.099	19.099	3;4	0.0002232	12131	DP1063-9	101.08	101.08			1.2973	1.357	16.099	2	0	Median	33811000	15694000	18117000	3278	162	3109	7617;7618	16220;16221;16222	16220		3	9606
VTWDGHSGSMAR	0	1	Oxidation (M)	1318.5724	0.57243324	406	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				14.012	14.012	3	0.030332	4990	DP1063-7	41.48	32.268			0.73945	0.76422	NaN	1	0	Median	29739000	15566000	14174000	3279	406	3110	7619	16223;16224	16224	505	2	9606
VTYVVLDEADR	0	1	Unmodified	1278.6456	0.6455814	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				18.587	18.587	2	0.027193	11172	DP1063-7	89.171	46.307			NaN	NaN	NaN	0	0	Median	15278000	0	15278000	3280	436	3111	7620	16225	16225		1	9606
VVALSMSPVDDTFISGSLDK	1	0	Oxidation (M)	2096.0347	0.034737111	433	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		21.308	21.308	2	4.8449E-07	15030	DP1063-9	144.4	120.58			NaN	NaN	NaN	0	0	Median	26438000	0	26438000	3281	433	3112	7621	16226;16227	16227	530	2	9606
VVCVYGGTGISEQIAELKR	1	1	Unmodified	2078.083	0.083024708	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	2	0		1				19.576	19.576	3	6.2471E-05	12549	DP1063-7	132.5	96.156			NaN	NaN	NaN	0	0	Median	28421000	0	28421000	3282	436	3113	7622	16228	16228		1	9606
VVDALGNAIDGK	1	0	Unmodified	1170.6245	0.62445203	170	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.787	17.787	2	0.015056	10275	DP1063-8	120.63	83.082			NaN	NaN	NaN	0	0	Median	0	0	0	3283	170	3114	7623	16229	16229		1	9606
VVDLMAHMASKE	1	0	2 Oxidation (M)	1361.6319	0.63192195	89	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	2	1	4	0				1		13.854	13.854	3	0.0080264	5128	DP1063-9	57.164	33.488			0.5775	0.59357	NaN	1	0	Median	20283000	13412000	6871600	3284	89	3115	7624	16230	16230	79;80	1	9606
VVDPFSK	1	0	Unmodified	790.4225	0.42250475	254	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.252	17.252	2	0.049097	9640	DP1063-9	89.369	58.066			NaN	NaN	NaN	0	0	Median	4060700	0	4060700	3285	254	3116	7625	16231	16231		1	9606
VVDSMEDEVQR	0	1	Oxidation (M)	1321.582	0.58199487	566	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	3	0			1			13.983	13.983	2	0.00015652	5423	DP1063-8	111.61	76.338			0.97488	1.0101	NaN	1	0	Median	10210000	5067400	5142200	3286	566	3117	7626	16232;16233;16234	16232	626	3	9606
VVEEAPSIFLDAETR	0	1	Unmodified	1674.8465	0.84646606	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		26.382	26.382	2	1.1571E-23	14473	DP1063-7	204.17	204.17			0.97089	0.99468	8.995	4	0	Median	328280000	159700000	168590000	3287	94	3118	7627;7628;7629;7630	16235;16236;16237;16238;16239;16240;16241;16242;16243;16244;16245;16246	16238		12	9606
VVEEAPSIFLDAETRR	0	2	Unmodified	1830.9476	0.94757708	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.75	0.829		2	1	1		19.505	19.505	2;3	6.7686E-58	12434	DP1063-7	208.74	178.41			0.96804	0.97928	10.656	4	0	Median	447390000	223870000	223520000	3288	94	3119	7631;7632;7633;7634	16247;16248;16249;16250;16251;16252;16253;16254;16255;16256;16257;16258;16259	16251		13	9606
VVEFSELDKPR	1	1	Unmodified	1317.6929	0.69286595	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2.67	1.11	1	2	1	2		17.084	17.084	2;3	5.4634E-12	9336	DP1063-9	182.46	182.46			29.284	27.694	NaN	1	0	Median	727600000	3595200	724010000	3289	418	3120	7635;7636;7637;7638;7639;7640	16260;16261;16262;16263;16264;16265;16266;16267;16268;16269;16270	16268		11	9606
VVEGTPLIDGR	0	1	Unmodified	1154.6295	0.62953741	384	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	2.5	1.5	1			1		17.332	17.332	2	1.5135E-05	7809	DP1063-6	166.07	112.29			NaN	NaN	NaN	0	0	Median	28498000	0	28498000	3290	384	3121	7641;7642	16271;16272;16273;16274	16272		4	9606
VVEIAPAAHLDPQLR	0	1	Unmodified	1627.9046	0.90459006	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.21	0.694	1	15	1	2		23.569	23.569	2;3	1.6056E-24	10788	DP1063-7	187.58	145.37			0.67298	0.65901	NaN	1	0	Median	1304400000	999240000	305150000	3291	130	3122	7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655;7656;7657;7658;7659;7660;7661	16275;16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297;16298;16299;16300;16301;16302;16303;16304;16305;16306;16307;16308	16282		34	9606
VVEVLAGHGHLYSR	0	1	Unmodified	1535.8209	0.82086043	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.012	16.012	3	0.040201	6173	DP1063-6	100.73	100.73			1.2557	1.3052	NaN	1	0	Median	19491000	9000600	10490000	3292	224	3123	7662	16309	16309		0	9606
VVGAVIDQGLITR	0	1	Unmodified	1339.7823	0.78234966	30	E9PRG8	C11orf98	Uncharacterized protein C11orf98	yes	yes	0	0	0	5	0					1	19.275	19.275	2	8.6287E-06	12758	DP1063-10	155.11	100.03			NaN	NaN	NaN	0	0	Median	19862000	0	19862000	3293	30	3124	7663	16310;16311	16310		2	9606
VVGTIDQLVK	1	0	Unmodified	1070.6336	0.63356015	447	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	2	0		1				18.379	18.379	2	0.023213	10948	DP1063-7	92.838	48.721			NaN	NaN	NaN	0	0	Median	11527000	0	11527000	3294	447	3125	7664	16312	16312		1	9606
VVHSYEELEENYTR	0	1	Unmodified	1766.8111	0.81114318	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.1	1.3	1	3	2	2	2	17.506	17.506	2;3	1.3928E-69	9586	DP1063-7	261.38	261.38			0.95591	0.91991	24.69	8	0	Median	2491900000	1233000000	1258900000	3295	130	3126	7665;7666;7667;7668;7669;7670;7671;7672;7673;7674	16313;16314;16315;16316;16317;16318;16319;16320;16321;16322;16323;16324;16325;16326;16327;16328;16329;16330;16331;16332;16333;16334;16335;16336;16337;16338;16339;16340;16341;16342;16343;16344;16345	16326		33	9606
VVIGMDVAASEFFR	0	1	Oxidation (M)	1555.7705	0.77046434	104	P06733	ENO1	Alpha-enolase	yes	yes	0	1	0	4	0				1		21.318	21.318	2	0.0023648	15023	DP1063-9	84.507	60.657			0.5467	0.57187	NaN	1	0	Median	14946000	9044600	5901600	3296	104	3127	7675	16346;16347;16348	16346	105	3	9606
VVLAYEPVWAIGTGK	1	0	Unmodified	1601.8817	0.88172935	251	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	22.273	22.273	2	0.015716	16538	DP1063-10	99.752	69.826			NaN	NaN	NaN	0	0	Median	2834500	2834500	0	3297	251	3128	7676	16349;16350	16349		2	9606
VVLIGGKPDR	1	1	Unmodified	1052.6342	0.63422886	262	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	3	0			1			14.873	14.873	2	0.0038966	6624	DP1063-8	93.162	61.402			3.1964	3.214	NaN	1	0	Median	11906000	2673100	9233100	3298	262	3129	7677	16351;16352	16352		2	9606
VVLLTGETSTDLK	1	0	Unmodified	1374.7606	0.76061116	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					18.657	18.657	2	0.029258	9517	DP1063-6	82.171	58.216			NaN	NaN	NaN	0	0	Median	9450200	0	9450200	3299	71	3130	7678	16353	16353		1	9606
VVLVLAGR	0	1	Unmodified	825.54362	0.54362294	258	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	18.089	18.089	2	1.2717E-05	11179	DP1063-10	143.18	89.657			14.485	10.447	NaN	1	0	Median	275170000	19500000	255670000	3300	258	3131	7679	16354;16355;16356;16357	16356		4	9606
VVNDEEVVR	0	1	Unmodified	1057.5404	0.54038805	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					14.795	14.795	2	0.0063002	4619	DP1063-6	121.62	76.537			NaN	NaN	NaN	0	0	Median	13008000	0	13008000	3301	73	3132	7680	16358;16359	16359		2	9606
VVPGIVYLGHIPPR	0	1	Unmodified	1515.8926	0.89256881	558	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		19.368	19.368	3	0.02616	12450	DP1063-9	75.739	40.094			NaN	NaN	NaN	0	0	Median	6137000	0	6137000	3302	558	3133	7681	16360	16360		1	9606
VVPSDLYPLVLGFLR	0	1	Unmodified	1686.9709	0.97087871	387	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2.33	0.471		2	1			26.628	26.628	2;3	0.0080677	21172	DP1063-8	97.734	71.061			NaN	NaN	NaN	0	0	Median	21157000	0	21157000	3303	387	3134	7682;7683;7684	16361;16362;16363;16364;16365;16366	16365		6	9606
VVSEDFLQDVSASTK	1	0	Unmodified	1623.7992	0.79918151	119	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		2				20.513	20.513	2	0.00016431	13770	DP1063-7	136.38	92.934			NaN	NaN	NaN	0	0	Median	0	0	0	3304	119	3135	7685;7686	16367;16368	16367		2	9606
VVSNDDGSISYESR	0	1	Unmodified	1526.6849	0.68488004	2	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1	0	1					15.74	15.74	2	2.6752E-08	5831	DP1063-6	168.22	132.95			NaN	NaN	NaN	0	0	Median	5384900	0	5384900	3305	2	3136	7687	16369;16370;16371;16372	16369		4	9606
VVTDLISLIR	0	1	Unmodified	1127.6914	0.69140938	197	P38432	COIL	Coilin	yes	yes	0	0	0	3	0			1			22.566	22.566	2	0.0032918	16498	DP1063-8	168.27	117.21			NaN	NaN	NaN	0	0	Median	15361000	0	15361000	3306	197	3137	7688	16373;16374	16373		2	9606
VVTQNICQYR	0	1	Unmodified	1279.6343	0.63430521	449	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				16.066	16.066	2	0.011478	7721	DP1063-7	107.9	68.874			NaN	NaN	NaN	0	0	Median	22412000	0	22412000	3307	449	3138	7689	16375	16375		1	9606
VVTTNYKPVANHQYNIEYER	1	1	Unmodified	2437.2026	0.20262257	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		16.362	16.362	4	4.1612E-12	8445	DP1063-9	155.92	118.49			NaN	NaN	NaN	0	0	Median	45865000	0	45865000	3308	138	3139	7690	16376;16377	16377		2	9606
VVTVVTTK	1	0	Unmodified	845.52222	0.52221879	436	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1.5	0.5	1	1				14.421	14.421	2	0.0094201	5490	DP1063-7	110.31	63.228			NaN	NaN	NaN	0	0	Median	23488000	0	23488000	3309	436	3140	7691;7692	16378;16379	16379		2	9606
VVVTDDSDERR	0	2	Unmodified	1289.6212	0.62115757	493	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				13.08	13.08	3	0.019574	3796	DP1063-7	77.662	42.121			NaN	NaN	NaN	0	0	Median	4913100	0	4913100	3310	493	3141	7693	16380	16380		1	9606
VVYASATGASEPR	0	1	Unmodified	1306.6517	0.65172941	2	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	1	0	1					15.065	15.065	2	0.0021318	4952	DP1063-6	128.03	98.865			NaN	NaN	NaN	0	0	Median	3471600	0	3471600	3311	2	3142	7694	16381;16382	16382		2	9606
VWDDGIIDPADTR	0	1	Unmodified	1471.6943	0.69432251	524	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	20.269	20.269	2	5.259E-10	13469	DP1063-8	175.15	152.51			0.99116	1.0458	28.08	3	0	Plateau	349370000	173770000	175590000	3312	524	3143	7695;7696;7697	16383;16384;16385;16386;16387;16388;16389;16390	16387		8	9606
VWIKPGAEQSFLYGNHVLK	2	0	Unmodified	2185.1684	0.16840932	564	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	1	5	0					1	19.216	19.216	4	0.0031319	12664	DP1063-10	89.866	69.427			NaN	NaN	NaN	0	0	Median	5104300	0	5104300	3313	564	3144	7698	16391;16392	16392		2	9606
VYAEDPYK	1	0	Unmodified	983.46001	0.46001246	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			15.422	15.422	2	0.03572	6824	DP1063-7	65.252	42.233			0.92476	0.94208	1.8558	2	0	Median	284630000	142200000	142420000	3314	94	3145	7699;7700	16393;16394;16395;16396;16397	16394		5	9606
VYEGERPLTK	1	1	Unmodified	1190.6295	0.62953741	127	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	2.5	0.5		1	1			13.921	13.921	3	0.012573	5318	DP1063-8	85.533	62.161			NaN	NaN	NaN	0	0	Median	22065000	0	22065000	3315	127	3146	7701;7702	16398;16399;16400	16399		3	9606
VYIVHGVQEDLR	0	1	Unmodified	1426.7569	0.75686319	390	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	4	0				2		17.044	17.044	3	0.019364	9315	DP1063-9	89.356	44.717			NaN	NaN	NaN	0	0	Median	0	0	0	3316	390	3147	7703;7704	16401;16402	16402		2	9606
VYNVTQHAVGIVVNK	1	0	Unmodified	1639.9046	0.90459006	215	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					2	17.337	17.337	2;3	1.613E-62	10163	DP1063-10	282.92	234.63			8.8646	5.2588	NaN	1	0	Median	218550000	20623000	197930000	3317	215	3148	7705;7706	16403;16404;16405;16406;16407;16408;16409	16408		7	9606
VYNYNHLMPTR	0	1	Oxidation (M)	1422.6714	0.671419	258	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	5	0					2	15.339	15.339	2;3	0.00045854	7651	DP1063-10	83.081	61.45			10.358	7.4709	NaN	1	0	Median	146430000	11283000	135150000	3318	258	3149	7707;7708	16410;16411;16412;16413	16411	319	4	9606
WELLQQVDTSTR	0	1	Unmodified	1474.7416	0.74160705	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	1	1		1			20.566	20.566	2	5.5618E-09	13898	DP1063-8	202.56	158.6		+	NaN	NaN	NaN	0	0	Median	91787000	91787000	0	3319	88	3150	7709;7710	16414;16415;16416	16416		3	9606
WFYIGSAFR	0	1	Unmodified	1145.5658	0.56581494	25	CON__Q3SZR3			yes	yes	0	0	0	4	0				1		22.296	22.296	2	0.0027881	16287	DP1063-9	136.11	88.265		+	NaN	NaN	NaN	0	0	Median	25988000	25988000	0	3320	25	3151	7711	16417;16418	16418		2	
WMLAGRPHPTQK	1	1	Oxidation (M)	1436.7347	0.73468796	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					14.399	14.399	2;3	0.00034042	4160	DP1063-6	114.89	79.742			0.79064	0.83497	0.57489	2	0	Median	148310000	83861000	64449000	3321	355	3152	7712;7713	16419;16420;16421;16422;16423;16424;16425;16426	16424	457	8	9606
WMLAGRPHPTQK	1	1	Unmodified	1420.7398	0.73977334	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					14.984	14.984	2;3	0.00014258	4858	DP1063-6	121.68	102.22			0.7702	0.81338	0.85065	2	0	Median	43554000	25001000	18553000	3322	355	3152	7714;7715	16427;16428;16429;16430;16431;16432	16429		6	9606
WQLSVATEQPELEGPR	0	1	Unmodified	1838.9163	0.91627696	531	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				20.456	20.456	2	0.00045889	13767	DP1063-7	140.45	117.23			3.1537	3.2413	NaN	1	0	Median	42498000	17791000	24707000	3323	531	3153	7716	16433;16434	16433		2	9606
WQNNLLPSR	0	1	Unmodified	1126.5883	0.5883413	268	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	18.381	18.381	2	0.01255	11528	DP1063-10	103.74	75.565			NaN	NaN	NaN	0	0	Median	13745000	0	13745000	3324	268	3154	7717	16435;16436	16436		2	9606
WQYLLMAAEPYETIAFK	1	0	Oxidation (M)	2089.0231	0.023050213	404	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	0	3	0			1			23.545	23.545	2	0.00038846	17724	DP1063-8	115.06	115.06			0.71404	0.71915	NaN	1	0	Median	24974000	16224000	8750400	3325	404	3155	7718	16437;16438;16439;16440	16439	499	4	9606
WSYEMFR	0	1	Oxidation (M)	1033.4328	0.43275186	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.015	19.015	2	0.015762	9933	DP1063-6	76.847	55.076			0.96112	0.98381	NaN	1	0	Median	68174000	35581000	32593000	3326	355	3156	7719	16441;16442	16442	448	2	9606
WVGGPEIELIAIATGGR	0	1	Unmodified	1737.9414	0.94136949	222	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			24.878	24.878	2	0.00077672	19289	DP1063-8	129.37	90.409			NaN	NaN	NaN	0	0	Median	3833700	0	3833700	3327	222	3157	7720	16443;16444	16444		2	9606
WWIVGSAWSGAPMIDNSHHTHLQK	1	0	Oxidation (M)	2773.3183	0.31833781	418	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2	0		1				19.784	19.784	4	2.112E-06	12836	DP1063-7	115.74	101.89			NaN	NaN	NaN	0	0	Median	57496000	0	57496000	3328	418	3158	7721	16445	16445	521	1	9606
YAAVHVHTNAAR	0	1	Unmodified	1308.6687	0.66871688	227	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	0	0	3	0			1			12.839	12.839	3	0.043029	4016	DP1063-8	67.214	36.39			NaN	NaN	NaN	0	0	Median	4129700	0	4129700	3329	227	3159	7722	16446	16446		1	9606
YAHVVLR	0	1	Unmodified	856.49192	0.49192172	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	14.352	14.352	2	0.023917	6511	DP1063-10	77.72	65.289			3.4281	2.4725	NaN	1	0	Median	43285000	9642800	33642000	3330	273	3160	7723	16447;16448;16449	16447		3	9606
YAICSALAASALPALVMSK	1	0	Oxidation (M)	1952.0111	0.011105318	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	3.67	0.471			1	2		22.612	22.612	2;3	0.0022986	16679	DP1063-9	112.84	79.782			NaN	NaN	NaN	0	0	Median	75234000	0	75234000	3331	193	3161	7724;7725;7726	16450;16451;16452;16453;16454	16452	216	5	9606
YAICSALAASALPALVMSK	1	0	Unmodified	1936.0162	0.016190696	193	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		23.534	23.534	2	0.018379	17888	DP1063-9	88.73	58.166			NaN	NaN	NaN	0	0	Median	3800200	0	3800200	3332	193	3161	7727	16455	16455		1	9606
YALTGDEVKK	2	0	Unmodified	1122.5921	0.59208927	281	P62701;P22090;Q8TD47	RPS4X;RPS4Y1;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	1	4	0				1		14.541	14.541	2	0.011027	5975	DP1063-9	127.68	94.787			NaN	NaN	NaN	0	0	Median	15338000	0	15338000	3333	281	3162	7728	16456;16457	16456		2	9606
YASSANLHLPK	1	0	Unmodified	1199.6299	0.62987176	18	CON__P34955			yes	yes	0	0	0	3	0			1			15.81	15.81	2	0.040585	7811	DP1063-8	81.95	27.174		+	NaN	NaN	NaN	0	0	Median	0	0	0	3334	18	3163	7729	16458	16458		1	
YAVDDVPFSIPAASEIADLSNIINK	1	0	Unmodified	2661.3538	0.35376306	510	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	3	0			1			26.106	26.106	3	0.0059449	20738	DP1063-8	73.831	40.155			NaN	NaN	NaN	0	0	Median	4331900	0	4331900	3335	510	3164	7730	16459	16459		1	9606
YCGQLQMIQEQISNLEAQITDVR	0	1	Oxidation (M)	2752.316	0.31601412	19	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	3	0			1			25.629	25.629	3	6.2048E-07	20164	DP1063-8	124.66	99.489		+	NaN	NaN	NaN	0	0	Median	7870800	7870800	0	3336	19	3165	7731	16460	16460	16	1	9606
YCYYNETHK	1	0	Unmodified	1276.5183	0.5182724	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		2				14.144	14.144	2;3	0.0033854	5146	DP1063-7	116.05	102.6			NaN	NaN	NaN	0	0	Median	31023000	0	31023000	3337	514	3166	7732;7733	16461;16462;16463	16462		3	9606
YDAFLASESLIK	1	0	Unmodified	1355.6973	0.69728262	295	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	21.309	21.309	2	0.049751	15426	DP1063-10	57.149	57.149			10.475	6.2143	NaN	1	0	Median	34235000	3338400	30896000	3338	295	3167	7734	16464	16464		1	9606
YDSAPATDGSGTALGWTVAWK	1	0	Unmodified	2153.0065	0.006548526	28	CON__Streptavidin			yes	yes	0	0	0	4.2	1.4	1	1		1	7	26.177	26.177	2;3	1.2234E-98	16335	DP1063-10	235.72	175.09		+	NaN	NaN	NaN	0	0	Median	256440000	256440000	0	3339	28	3168	7735;7736;7737;7738;7739;7740;7741;7742;7743;7744	16465;16466;16467;16468;16469;16470;16471;16472;16473;16474;16475;16476;16477;16478	16465		14	
YEDFSNLGTTHLLR	0	1	Unmodified	1664.8158	0.81583463	162	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		19.318	19.318	3	0.00041781	12446	DP1063-9	137.95	106.17			0.92763	0.97034	NaN	1	0	Median	25982000	15166000	10816000	3340	162	3169	7745	16479;16480;16481;16482	16479		4	9606
YEELQITAGR	0	1	Unmodified	1178.5932	0.5931519	88	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	2	1				1	17.561	17.561	2	0.00039754	8072	DP1063-6	196.99	101.25		+	NaN	NaN	NaN	0	0	Median	134180000	134180000	0	3341	88	3170	7746;7747	16483;16484;16485;16486	16485		4	9606
YEELQQTAGR	0	1	Unmodified	1193.5677	0.56766543	17	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					14.931	14.931	2	0.0017183	4799	DP1063-6	168.27	126.84		+	NaN	NaN	NaN	0	0	Median	4394500	4394500	0	3342	17	3171	7748	16487;16488	16487		2	9606
YEELQVTVGR	0	1	Unmodified	1192.6088	0.60880197	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3.5	1.12		1	1	1	1	17.711	17.711	2	0.0013379	10131	DP1063-8	149.82	84.57		+	NaN	NaN	NaN	0	0	Median	68288000	68288000	0	3343	20	3172	7749;7750;7751;7752	16489;16490;16491;16492;16493;16494;16495	16493		7	9606
YEGFFSLWK	1	0	Unmodified	1175.5651	0.56514624	337	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		23.492	23.492	2	0.00088789	17802	DP1063-9	100.02	74.443			2.634	2.7074	NaN	1	0	Median	8916900	2207400	6709500	3344	337	3173	7753	16496;16497	16497		2	9606
YEITEQR	0	1	Unmodified	937.45051	0.45051041	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		14.86	14.86	2	0.00051136	6391	DP1063-9	132.96	67.697			NaN	NaN	NaN	0	0	Median	31596000	0	31596000	3345	336	3174	7754	16498;16499	16498		2	9606
YELGRPAANTK	1	1	Unmodified	1218.6357	0.63568542	267	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	14.136	14.136	2	0.00015013	6226	DP1063-10	157.78	123.57			NaN	NaN	NaN	0	0	Median	13453000	0	13453000	3346	267	3175	7755	16500;16501	16500		2	9606
YELISETGGSHDKR	1	1	Unmodified	1590.7638	0.76379906	351	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	0	1	2	0		1				14.619	14.619	3	0.00025799	5758	DP1063-7	127.71	108.89			4.906	5.1371	NaN	1	0	Median	20162000	2686200	17476000	3347	351	3176	7756	16502;16503	16502		2	9606
YENESLQNGR	0	1	Unmodified	1208.5422	0.54217896	211	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		13.97	13.97	2	0.0013112	3629	DP1063-6	144.12	104.57			NaN	NaN	NaN	0	0	Median	47555000	0	47555000	3348	211	3177	7757;7758;7759	16504;16505;16506;16507;16508;16509	16505		6	9606
YENEVALR	0	1	Unmodified	992.49271	0.49270958	16	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.5	1.5	1			1		15.731	15.731	2	0.031087	7618	DP1063-9	94.662	48.292		+	NaN	NaN	NaN	0	0	Median	14367000	14367000	0	3349	16	3178	7760;7761	16510;16511	16511		2	9606
YEQVDLVGK	1	0	Unmodified	1049.5393	0.53932542	490	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				16.948	16.948	2	0.00778	8938	DP1063-7	116.05	57.133			NaN	NaN	NaN	0	0	Median	11575000	0	11575000	3350	490	3179	7762	16512	16512		1	9606
YETVIMPVFGIATPFHIATIK	1	0	Oxidation (M)	2363.2599	0.25992644	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	0	1	0	1					22.931	22.931	3	0.012264	14991	DP1063-6	72.09	50.89			NaN	NaN	NaN	0	0	Median	3602600	0	3602600	3351	585	3180	7763	16513;16514	16514	638	2	9606
YFPTQALNFAFK	1	0	Unmodified	1445.7343	0.73433683	93;133;132	P05141;Q9H0C2;P12236;P12235	SLC25A5;SLC25A31;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	3.33	1.7	1			1	1	22.543	22.543	2	0.00011378	16596	DP1063-9	126.24	126.24			2.2303	2.2924	37.784	3	0	Median	112220000	36205000	76010000	3352	93;133;132	3181	7764;7765;7766	16515;16516;16517;16518;16519;16520;16521;16522;16523;16524	16524		10	9606
YFQIGTIVDNPADFYHSR	0	1	Unmodified	2142.0171	0.017053633	421	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2	0		1				21.479	21.479	2	0.026157	15090	DP1063-7	85.837	58.832			NaN	NaN	NaN	0	0	Median	0	0	0	3353	421	3182	7767	16525	16525		1	9606
YGDGGSTFQSTTGHCVHMR	0	1	Oxidation (M)	2112.8742	0.87417092	184	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3	0			1			14.321	14.321	3	0.010456	5775	DP1063-8	53.504	45.22			0.27863	0.28871	NaN	1	0	Median	82374000	65372000	17001000	3354	184	3183	7768	16526;16527	16526	208	2	9606
YGDSEFTVQSTTGHCVHMR	0	1	Oxidation (M)	2226.9423	0.94225048	239	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				2		15.444	15.444	3;4	0.001014	7160	DP1063-9	73.252	68.984			4.5456	4.7549	NaN	1	0	Median	55022000	7541100	47481000	3355	239	3184	7769;7770	16528;16529;16530;16531	16528	297	4	9606
YGEQGLR	0	1	Unmodified	821.40317	0.40316629	65	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	4	0				1		14.164	14.164	2	0.054026	5476	DP1063-9	84.359	39.386			NaN	NaN	NaN	0	0	Median	0	0	0	3356	65	3185	7771	16532	16532		1	9606
YGIICMEDLIHEIYTVGK	1	0	Oxidation (M)	2169.0486	0.048613037	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	0	4	0				2		22.279	22.279	2;3	7.2903E-23	16325	DP1063-9	192.14	145.26			12.799	13.155	NaN	1	0	Median	43882000	3701900	40180000	3357	152	3186	7772;7773	16533;16534;16535;16536;16537	16537	180	5	9606
YGIICMEDLIHEIYTVGK	1	0	Unmodified	2153.0537	0.053698415	152	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		24.877	24.877	3	0.0052126	19451	DP1063-9	93.754	49.46			NaN	NaN	NaN	0	0	Median	2971600	0	2971600	3358	152	3186	7774	16538	16538		1	9606
YGQFSGLNPGGRPITPPR	0	2	Unmodified	1912.9908	0.9907793	264	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4	0				1		17.828	17.828	3	0.051458	10354	DP1063-9	63.128	37.183			NaN	NaN	NaN	0	0	Median	16751000	0	16751000	3359	264	3187	7775	16539	16539		1	9606
YHAASAEEQATIER	0	1	Unmodified	1574.7325	0.73249893	569	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	5	0					1	14.439	14.439	3	0.0040198	6644	DP1063-10	97.69	72.362			NaN	NaN	NaN	0	0	Median	4514100	0	4514100	3360	569	3188	7776	16540;16541	16540		2	9606
YHTINGHNAEVR	0	1	Unmodified	1409.68	0.68000985	161	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		12.916	12.916	3	0.00056606	3957	DP1063-9	110.31	82.878			2.4451	2.5577	NaN	1	0	Median	12207000	3783900	8423200	3361	161	3189	7777	16542;16543;16544;16545	16544		4	9606
YHTSQSGDEMTSLSEYVSR	0	1	Oxidation (M)	2191.9328	0.93279124	113	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		2				17.006	17.006	2;3	1.4732E-32	9007	DP1063-7	199.33	171.65			1.4148	1.4464	NaN	1	0	Median	59844000	25856000	33988000	3362	113	3190	7778;7779	16546;16547	16547	127	2	9606
YHTVNGHNCEVR	0	1	Unmodified	1484.6579	0.6578942	118	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4	0				1		12.589	12.589	3	0.011489	3623	DP1063-9	87.184	49.759			NaN	NaN	NaN	0	0	Median	7335200	0	7335200	3363	118	3191	7780	16548;16549	16548		2	9606
YHYELLNYIDLPVLAIHGK	1	0	Unmodified	2270.2099	0.20993978	537	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2	0		1				23.027	23.027	4	0.0022592	17062	DP1063-7	99.021	79.333			NaN	NaN	NaN	0	0	Median	9857300	0	9857300	3364	537	3192	7781	16550;16551	16550		2	9606
YICDNQDTISSK	1	0	Unmodified	1442.6348	0.63475872	12	CON__P02769			yes	yes	0	0	0	2.78	0.711	2	1	14	1		24.202	24.202	2	4.3918E-09	5199	DP1063-6	205.09	91.472		+	NaN	NaN	NaN	0	0	Median	2302100000	2302100000	0	3365	12	3193	7782;7783;7784;7785;7786;7787;7788;7789;7790;7791;7792;7793;7794;7795;7796;7797;7798;7799	16552;16553;16554;16555;16556;16557;16558;16559;16560;16561;16562;16563;16564;16565;16566;16567;16568;16569;16570;16571;16572;16573;16574;16575;16576;16577;16578;16579;16580;16581;16582;16583;16584;16585;16586;16587;16588	16553		37	
YIDQEELNK	1	0	Unmodified	1150.5506	0.55061839	113;110	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2.5	0.5		1	1			15.596	15.596	2	5.3185E-16	7096	DP1063-7	182.68	119.26			1.6198	1.6501	27.762	2	0	Median	91276000	36552000	54723000	3366	110;113	3194	7800;7801	16589;16590;16591;16592;16593	16590		5	9606
YIGEVGDIVVGR	0	1	Unmodified	1275.6823	0.68230126	372	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	4	0				1		19.744	19.744	2	0.0025083	13017	DP1063-9	132.01	106.45			NaN	NaN	NaN	0	0	Median	20760000	0	20760000	3367	372	3195	7802	16594;16595;16596;16597	16596		4	9606
YIHLENLLAR	0	1	Unmodified	1240.6928	0.69280637	412	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	3	0			1			19.71	19.71	3	0.02904	12797	DP1063-8	90.149	58.115			NaN	NaN	NaN	0	0	Median	0	0	0	3368	412	3196	7803	16598	16598		1	9606
YILDYPLGDK	1	0	Unmodified	1195.6125	0.61249036	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					20.292	20.292	2	0.039321	11641	DP1063-6	82.749	28.782			NaN	NaN	NaN	0	0	Median	5405000	0	5405000	3369	73	3197	7804	16599	16599		1	9606
YIQELWR	0	1	Unmodified	1006.5236	0.52361577	257	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	19.277	19.277	2	0.025626	12695	DP1063-10	101.21	69.257			NaN	NaN	NaN	0	0	Median	129020000	0	129020000	3370	257	3198	7805	16600;16601	16601		2	9606
YIQNLQGLFALPFGR	0	1	Unmodified	1735.941	0.94097556	380	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	1	0	1					24.776	24.776	2	0.0003941	17122	DP1063-6	128.51	89.248			NaN	NaN	NaN	0	0	Median	0	0	0	3371	380	3199	7806	16602	16602		1	9606
YIQPWESEFIDSQR	0	1	Unmodified	1796.837	0.836964	431	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					21.464	21.464	2	2.7882E-11	13211	DP1063-6	185.18	130.71			NaN	NaN	NaN	0	0	Median	8837800	0	8837800	3372	431	3200	7807	16603;16604	16604		2	9606
YIQQTKPLTLER	1	1	Unmodified	1488.83	0.83002813	55	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	1	5	0					1	16.009	16.009	3	0.038236	8585	DP1063-10	66.267	35.717			NaN	NaN	NaN	0	0	Median	4286400	0	4286400	3373	55	3201	7808	16605	16605		1	9606
YISFEER	0	1	Unmodified	942.4447	0.44469675	377	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		17.244	17.244	2	0.0013975	9576	DP1063-9	119.56	69.43			0.83023	0.86845	NaN	1	0	Median	45795000	24442000	21354000	3374	377	3202	7809	16606;16607	16606		2	9606
YISPDQLADLYK	1	0	Unmodified	1424.7187	0.71874635	104	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		21.112	21.112	2	0.00044048	14801	DP1063-9	120.06	84.118			0.55071	0.56603	NaN	1	0	Median	18164000	12703000	5461800	3375	104	3203	7810	16608;16609;16610;16611	16608		4	9606
YISSQIERPIR	0	2	Unmodified	1360.7463	0.7462985	71	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	1	0	1					15.86	15.86	3	0.00011078	5980	DP1063-6	98.044	77.729			5.5041	5.5997	NaN	1	0	Median	15883000	3441800	12441000	3376	71	3204	7811	16612;16613	16612		2	9606
YIYDSAFHPDTGEK	1	0	Unmodified	1641.7311	0.73110195	523	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		17.568	17.568	3	0.038797	10042	DP1063-9	70.438	41.083			NaN	NaN	NaN	0	0	Median	7126200	0	7126200	3377	523	3205	7812	16614	16614		1	9606
YKAEDEVQR	1	1	Unmodified	1136.5462	0.54620171	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	2.75	0.433		1	3			13.019	13.019	2;3	1.5344E-10	4196	DP1063-8	167.23	167.23			4.2511	4.362	6.0037	2	0	Median	379820000	64518000	315310000	3378	124	3206	7813;7814;7815;7816	16615;16616;16617;16618;16619;16620;16621;16622;16623	16620		9	9606
YKAEDEVQRER	1	2	Unmodified	1421.6899	0.68990583	124	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			12.995	12.995	3	0.013957	4122	DP1063-8	70.1	46.376			4.7607	5.1982	NaN	1	0	Median	112970000	17705000	95263000	3379	124	3207	7817	16624;16625;16626	16624		3	9606
YKEETIEKMQE	2	0	Oxidation (M)	1442.6599	0.65991084	255	P61254	RPL26	60S ribosomal protein L26	yes	yes	0	1	2	5	0					2	13.492	13.492	2;3	8.3359E-05	5459	DP1063-10	98.182	79.083			5.1017	5.1993	73.576	2	0	Median	24511000	3446200	21065000	3380	255	3208	7818;7819	16627;16628;16629;16630	16630	317	4	9606
YKITDIIGKEEGIGPENLR	2	1	Unmodified	2144.1477	0.14773345	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	3					19.857	19.857	2;3;4	1.8092E-18	11097	DP1063-6	186.45	154.8			0.85334	0.88698	14.38	2	0	Median	74666000	36050000	38616000	3381	355	3209	7820;7821;7822	16631;16632;16633;16634;16635;16636;16637;16638	16634		8	9606
YLDGLTAER	0	1	Unmodified	1036.5189	0.51892433	20	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.75	1.48	1	1	1		1	17.617	17.617	2	0.0087473	8169	DP1063-6	112.41	42.979		+	NaN	NaN	NaN	0	0	Median	135100000	135100000	0	3382	20	3210	7823;7824;7825;7826	16639;16640;16641;16642;16643	16640		5	9606
YLDLHDCYLK	1	0	Unmodified	1338.6278	0.62782285	349	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			1			18.257	18.257	3	0.010961	10884	DP1063-8	66.19	66.19			0.72552	0.73071	NaN	1	0	Median	27812000	17365000	10447000	3383	349	3211	7827	16644;16645	16644		2	9606
YLGINSDGLVVGR	0	1	Unmodified	1361.7303	0.73031409	379	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	4	0				1		20.367	20.367	2	0.00087766	13844	DP1063-9	136.63	76.045			NaN	NaN	NaN	0	0	Median	5647200	0	5647200	3384	379	3212	7828	16646;16647	16646		2	9606
YLMEEDEDAYKK	2	0	Oxidation (M)	1548.6654	0.66539015	214	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	1	4	0				2		14.9	14.9	2;3	7.7193E-06	6409	DP1063-9	157.34	128.17			14.312	15.14	NaN	1	0	Median	98342000	5032400	93310000	3385	214	3213	7829;7830	16648;16649;16650;16651;16652	16651	254	5	9606
YLNPLQTDAAENNVCDINSVHGLFATGTIEGR	0	1	Unmodified	3488.663	0.66304574	497	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	2	0		1				22.091	22.091	3	7.3634E-27	15847	DP1063-7	155.8	136.31			NaN	NaN	NaN	0	0	Median	21595000	0	21595000	3386	497	3214	7831	16653;16654	16654		2	9606
YLSLHDNK	1	0	Unmodified	988.49779	0.49779495	433	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		14.22	14.22	2	0.0014036	5509	DP1063-9	127.12	96.506			1.7862	1.8359	NaN	1	0	Median	18563000	4329500	14234000	3387	433	3215	7832	16655;16656	16656		2	9606
YLSQQWAK	1	0	Unmodified	1022.5185	0.5185304	138	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		16.553	16.553	2	0.0052009	8714	DP1063-9	118.69	72.735			NaN	NaN	NaN	0	0	Median	24468000	0	24468000	3388	138	3216	7833	16657;16658	16658		2	9606
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Oxidation (M)	2496.2054	0.20538427	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.2	1.17		2	1	1	1	18.235	18.235	2;3	9.2552E-74	10646	DP1063-7	244.54	244.54			0.83492	0.86032	5.1647	3	0	Plateau	412120000	231850000	180260000	3389	483	3217	7834;7835;7836;7837;7838	16659;16660;16661;16662;16663;16664;16665;16666;16667;16668;16669;16670;16671;16672;16673;16674	16663	564	16	9606
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Unmodified	2480.2105	0.21046965	483	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				19.842	19.842	2	8.5296E-123	12938	DP1063-7	292.38	292.38			1.0324	1.0638	NaN	1	0	Median	42303000	18760000	23543000	3390	483	3217	7839	16675;16676;16677;16678	16677		4	9606
YLTVAAIFR	0	1	Unmodified	1052.6019	0.6018661	373	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	3.5	0.5			1	1		21.754	21.754	2	0.00036024	15442	DP1063-8	125.25	67.789			3.5433	3.689	16.531	2	0	Median	30612000	6644600	23967000	3391	373	3218	7840;7841	16679;16680;16681;16682;16683;16684	16680		6	9606
YLTVAAVFR	0	1	Unmodified	1038.5862	0.58621603	311;109	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	4.5	0.5				1	1	20.703	20.703	2	0.00014014	14300	DP1063-9	133.81	98.92			3.6293	3.7964	NaN	1	0	Median	164590000	30094000	134500000	3392	109;311	3219	7842;7843	16685;16686;16687;16688;16689;16690	16689		6	9606
YLTVATVFR	0	1	Unmodified	1068.5968	0.59678072	366	Q13509	TUBB3	Tubulin beta-3 chain	no	no	0	0	0	4	0				1		20.366	20.366	2	0.020912	13928	DP1063-9	94.114	29.311			NaN	NaN	NaN	0	0	Median	4701800	0	4701800	3393	366	3220	7844	16691	16691		1	9606
YLVQDTDEFILPTGANK	1	0	Unmodified	1922.9626	0.96255845	41	Q5SRD1;O14925	TIMM23B;TIMM23	Putative mitochondrial import inner membrane translocase subunit Tim23B;Mitochondrial import inner membrane translocase subunit Tim23	yes	no	0	0	0	5	0					1	21.271	21.271	2	1.3285E-11	15320	DP1063-10	170.95	170.95			1.1962	0.7096	NaN	1	0	Median	12110000	6048100	6061500	3394	41	3221	7845	16692;16693;16694	16692		3	9606
YLYEIAR	0	1	Unmodified	926.48617	0.48616764	12	CON__P02769			no	no	0	0	0	1.91	0.812	12	29	1	2	1	20.591	20.591	1;2	0.0007527	10133	DP1063-7	153.61	0		+	NaN	NaN	NaN	0	0	Median	197780000	197780000	0	3395	12	3222	7846;7847;7848;7849;7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890	16695;16696;16697;16698;16699;16700;16701;16702;16703;16704;16705;16706;16707;16708;16709;16710;16711;16712;16713;16714;16715;16716;16717;16718;16719;16720;16721;16722;16723;16724;16725;16726;16727;16728;16729;16730;16731;16732;16733;16734;16735;16736;16737;16738;16739;16740	16710		46	
YLYLTPQDYK	1	0	Unmodified	1302.6496	0.64960415	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.476	19.476	2	1.0547E-24	10513	DP1063-6	212.58	157.97			0.90455	0.92273	NaN	1	0	Median	444670000	240760000	203910000	3396	355	3223	7891;7892	16741;16742;16743;16744;16745;16746	16742		6	9606
YLYLTPQDYKR	1	1	Unmodified	1458.7507	0.75071518	355	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.928	17.928	2	2.9982E-05	8494	DP1063-6	114.51	87.624			1.045	1.1036	NaN	1	0	Median	70936000	30646000	40290000	3397	355	3224	7893	16747;16748;16749;16750	16749		4	9606
YLYLTPQDYTR	0	1	Unmodified	1431.7034	0.70343063	38	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.989	19.989	2	0.016445	11253	DP1063-6	86.624	61.238			0.96671	1.014	NaN	1	0	Median	8464200	3781200	4683000	3398	38	3225	7894	16751	16751		0	9606
YMACCLLYR	0	1	Oxidation (M)	1264.5403	0.54027017	310;434;492	P68363;P68366;A6NHL2;Q71U36;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	3.5	0.5			1	1		18.278	18.278	2	0.0020515	10921	DP1063-8	91.041	79.877			3.2467	3.3801	0.25229	2	0	Median	340050000	75643000	264410000	3399	310;434;492	3226	7895;7896	16752;16753;16754;16755	16753	369	4	9606
YMACCLLYR	0	1	Unmodified	1248.5454	0.54535555	310;434;492	P68363;P68366;A6NHL2;Q71U36;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		19.159	19.159	2	0.0010227	12200	DP1063-9	105.39	87.571			3.1037	3.2466	NaN	1	0	Median	84722000	6124800	78597000	3400	310;434;492	3226	7897;7898	16756;16757;16758;16759	16758		4	9606
YNFPVEVEVPMER	0	1	Oxidation (M)	1623.7603	0.76029359	318	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.536	20.536	2	0.041799	11935	DP1063-6	83.081	51.447			NaN	NaN	NaN	0	0	Median	4759300	0	4759300	3401	318	3227	7899	16760	16760		1	9606
YNGEPEHIER	0	1	Unmodified	1242.5629	0.56291441	384	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	2	1	2		2			13.698	13.698	2;3	0.0074681	5054	DP1063-8	72.321	53.649			16.778	17.385	NaN	1	0	Median	31543000	905140	30638000	3402	384	3228	7900;7901;7902;7903	16761;16762;16763;16764;16765;16766;16767	16764		7	9606
YNGVFQECCQAEDK	1	0	Unmodified	1746.6978	0.69776968	12	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.902	16.902	2	4.9648E-19	9222	DP1063-8	227.81	205.48		+	NaN	NaN	NaN	0	0	Median	802140000	802140000	0	3403	12	3229	7904;7905;7906;7907	16768;16769;16770;16771;16772;16773;16774;16775;16776	16774		9	
YNGVFQECCQAEDKGACLLPK	2	0	Unmodified	2486.1029	0.10285023	12	CON__P02769			yes	yes	0	0	1	2.25	0.829	1	1	2			18.898	18.898	2;3	1.7706000000000001E-34	11687	DP1063-8	201.72	165.96		+	NaN	NaN	NaN	0	0	Median	313420000	313420000	0	3404	12	3230	7908;7909;7910;7911	16777;16778;16779;16780;16781;16782;16783;16784	16782		8	
YNPTWHCIVGR	0	1	Unmodified	1401.6612	0.66118866	303	Q96FJ2;P63167	DYNLL2;DYNLL1	Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic	yes	no	0	0	0	5	0					1	17.543	17.543	3	0.00017195	10440	DP1063-10	109.79	87.762			2.2487	1.6219	NaN	1	0	Median	12099000	3029100	9070100	3405	303	3231	7912	16785;16786	16785		2	9606
YPENFFLLR	0	1	Unmodified	1197.6182	0.61824444	194;264;265	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.33	0.471			2	1		22.079	22.079	1;2	0.0036111	15966	DP1063-9	132.57	73.586			NaN	NaN	NaN	0	0	Median	154570000	0	154570000	3406	194;264;265	3232	7913;7914;7915	16787;16788;16789;16790	16789		4	9606
YPIEHGIITNWDDMEK	1	0	Oxidation (M)	1975.8986	0.89857798	308	P68133;P68032;P63267;P62736	ACTA1;ACTC1;ACTG2;ACTA2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	1	0	4	0				1		18.547	18.547	2	0.018151	11379	DP1063-9	88.163	57.335			NaN	NaN	NaN	0	0	Median	0	0	0	3407	308	3233	7916	16791	16791	362	1	9606
YPLVFSPQMVGFYIK	1	0	Oxidation (M)	1803.927	0.92696498	73	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					23.405	23.405	2	0.010112	15490	DP1063-6	101.39	50.302			NaN	NaN	NaN	0	0	Median	3810100	0	3810100	3408	73	3234	7917	16792;16793;16794	16794	68	3	9606
YPMAVGLNK	1	0	Oxidation (M)	1007.511	0.51100218	580	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	0	5	0					1	15.974	15.974	2	0.051514	8302	DP1063-10	56.122	32.598			10.951	6.4965	NaN	1	0	Median	73223000	6033000	67190000	3409	580	3235	7918	16795	16795		1	9606
YPTFIDALR	0	1	Unmodified	1094.576	0.57604528	33	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			21.374	21.374	2	0.0068882	14976	DP1063-8	119.41	67.004			NaN	NaN	NaN	0	0	Median	7198900	0	7198900	3410	33	3236	7919	16796;16797	16797		2	9606
YPVNSVNILK	1	0	Unmodified	1145.6445	0.64445919	149	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			18.451	18.451	2	0.0017801	11124	DP1063-8	91.265	78.454			2.2947	2.3111	NaN	1	0	Median	30465000	7589600	22875000	3411	149	3237	7920	16798;16799	16799		2	9606
YQAVTATLEEK	1	0	Unmodified	1251.6347	0.63468237	203	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	5	0					1	16.722	16.722	2	0.0056438	9330	DP1063-10	128.35	103.83			NaN	NaN	NaN	0	0	Median	123880000	0	123880000	3412	203	3238	7921	16800;16801;16802	16800		3	9606
YQAVTATLEEKR	1	1	Unmodified	1407.7358	0.73579339	203	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	1	5	0					2	15.661	15.661	3	0.0065923	8128	DP1063-10	83.226	43.601			NaN	NaN	NaN	0	0	Median	0	0	0	3413	203	3239	7922;7923	16803;16804	16804		2	9606
YQILPLHSQIPR	0	1	Unmodified	1463.8249	0.82488317	345	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				18.437	18.437	3	0.029106	10922	DP1063-7	74.237	50.561			NaN	NaN	NaN	0	0	Median	15145000	0	15145000	3414	345	3240	7924	16805;16806	16806		2	9606
YQLLQLVEPFGVISNHLILNK	1	0	Unmodified	2437.3733	0.37331671	209	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				24.716	24.716	3	1.5297E-05	19182	DP1063-7	96.234	96.234			2.2116	2.2789	NaN	1	0	Median	7162700	1688900	5473800	3415	209	3241	7925	16807;16808	16807		2	9606
YQQGDFGYCPR	0	1	Unmodified	1389.5772	0.57718426	307	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	5	0					1	17.091	17.091	2	0.0070661	9864	DP1063-10	122.33	101.7			NaN	NaN	NaN	0	0	Median	19832000	0	19832000	3416	307	3242	7926	16809	16809		1	9606
YRPGTVALR	0	2	Unmodified	1031.5876	0.58761301	313	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	no	no	0	0	1	5	0					1	14.717	14.717	2	0.049703	6943	DP1063-10	78.264	37.996			2.9487	2.9928	NaN	1	0	Median	598680000	149500000	449180000	3417	313	3243	7927	16810	16810		1	9606
YRTEAHQDVVGR	0	2	Unmodified	1429.7062	0.7062246	514	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	2	0		1				12.919	12.919	3	0.0060786	3534	DP1063-7	95.417	59.894			NaN	NaN	NaN	0	0	Median	38314000	0	38314000	3418	514	3244	7928	16811;16812	16811		2	9606
YSEAITQSVLK	1	0	Unmodified	1237.6554	0.65541781	57	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					17.873	17.873	2	0.014997	8438	DP1063-6	101.38	65.729			NaN	NaN	NaN	0	0	Median	7466400	0	7466400	3419	57	3245	7929	16813	16813		1	9606
YSFIQALVR	0	1	Unmodified	1095.6077	0.60767975	468	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1	0	1					21.857	21.857	2	0.006609	13693	DP1063-6	120.46	63.279			NaN	NaN	NaN	0	0	Median	2663900	0	2663900	3420	468	3246	7930	16814	16814		1	9606
YSFLQFDPAPR	0	1	Unmodified	1339.6561	0.65608651	282	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	0	0	4	0				1		21.529	21.529	2	0.009778	15374	DP1063-9	109.66	77.793			NaN	NaN	NaN	0	0	Median	3530200	0	3530200	3421	282	3247	7931	16815	16815		1	9606
YSGELSGIR	0	1	Unmodified	980.49271	0.49270958	530	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3	0			1			16.35	16.35	2	0.0068882	8513	DP1063-8	119.41	58.608			NaN	NaN	NaN	0	0	Median	39326000	0	39326000	3422	530	3248	7932	16816;16817	16816		2	9606
YSGTLNLDR	0	1	Unmodified	1037.5142	0.5141733	224	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.696	16.696	2	0.035889	7027	DP1063-6	64.42	36.246			1.2505	1.3067	NaN	1	0	Median	12714000	6380300	6334100	3423	224	3249	7933	16818	16818		1	9606
YSLDPENPTK	1	0	Unmodified	1162.5506	0.55061839	154	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	16.996	16.996	2	0.00033332	9601	DP1063-10	96.034	74.183			5.4118	3.2105	NaN	1	0	Median	51283000	7925500	43358000	3424	154	3250	7934	16819;16820;16821;16822	16820		4	9606
YSLQYYMGLAEELVR	0	1	Oxidation (M)	1849.892	0.89203604	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		4				26.529	26.529	2;3	2.0927000000000002E-24	17801	DP1063-7	210.44	210.44			0.84205	0.85678	27.979	4	0	Median	276660000	140590000	136080000	3425	130	3251	7935;7936;7937;7938	16823;16824;16825;16826;16827;16828;16829;16830	16824	166	7	9606
YSLQYYMGLAEELVR	0	1	Unmodified	1833.8971	0.89712142	130	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				25.88	25.88	2;3	3.013E-06	20579	DP1063-7	189.24	162.49			0.83741	0.86706	5.8912	2	0	Median	16676000	9233900	7442100	3426	130	3251	7939;7940	16831;16832;16833;16834	16832		4	9606
YSLSGSVAHSR	0	1	Unmodified	1162.5731	0.57308516	447	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	2	0		1				14.636	14.636	2	0.038135	5814	DP1063-7	83.883	48.265			NaN	NaN	NaN	0	0	Median	0	0	0	3427	447	3252	7941	16835	16835		1	9606
YSNSEVVTGSGR	0	1	Unmodified	1254.584	0.58404378	437	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				14.421	14.421	2	0.001143	5497	DP1063-7	107.83	81.447			0.78888	0.81764	NaN	1	0	Median	11449000	5762200	5686600	3428	437	3253	7942	16836;16837	16836		2	9606
YSQLVVETIR	0	1	Unmodified	1206.6608	0.66083754	465	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	4	0				1		18.444	18.444	2	0.0014489	11223	DP1063-9	156.83	88.456			NaN	NaN	NaN	0	0	Median	22291000	0	22291000	3429	465	3254	7943	16838;16839	16838		2	9606
YSQVLANGLDNK	1	0	Unmodified	1320.6674	0.66737948	273	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	17.019	17.019	2	0.00013803	9780	DP1063-10	124.1	124.1			2.7998	1.6609	NaN	1	0	Median	50440000	11619000	38821000	3430	273	3255	7944	16840;16841	16841		2	9606
YSSAGTVEFLVDSK	1	0	Unmodified	1501.73	0.73003931	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			20.093	20.093	2	1.1067E-06	13263	DP1063-7	166.29	118.58			1.0109	1.0298	3.2116	2	0	Median	242670000	120570000	122100000	3431	94	3256	7945;7946	16842;16843;16844;16845;16846;16847;16848;16849	16843		8	9606
YSSAGTVEFLVDSKK	2	0	Unmodified	1629.825	0.82500233	94	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.5	0.5		1	1			18.497	18.497	3	0.00041054	11183	DP1063-8	98.654	78.886			0.83884	0.84076	12.475	2	0	Median	149810000	72588000	77223000	3432	94	3257	7947;7948	16850;16851;16852	16852		3	9606
YSSEVATESPLDFTK	1	0	Unmodified	1672.7832	0.7831971	460	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				19.686	19.686	2	0.0013604	12729	DP1063-7	125.54	101.08			NaN	NaN	NaN	0	0	Median	15765000	0	15765000	3433	460	3258	7949	16853;16854	16853		2	9606
YSVDIPLDK	1	0	Unmodified	1048.5441	0.54407645	258	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	18.788	18.788	2	0.00012302	12039	DP1063-10	134.48	87.484			10.691	6.3422	NaN	1	0	Median	131760000	11371000	120390000	3434	258	3259	7950	16855;16856	16856		2	9606
YTCSFCGK	1	0	Unmodified	1021.3997	0.39973717	259	P61513;A6NKH3	RPL37A;RPL37AP8	60S ribosomal protein L37a;Putative 60S ribosomal protein L37a-like protein	yes	no	0	0	0	5	0					1	15.015	15.015	2	0.003398	7331	DP1063-10	107.59	101.55			11.363	6.7412	NaN	1	0	Median	32911000	2957000	29954000	3435	259	3260	7951	16857;16858	16858		2	9606
YTEGVQSLNWTK	1	0	Unmodified	1424.6936	0.69359423	585	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					18.672	18.672	2	3.7493E-06	9515	DP1063-6	169.37	120.58			NaN	NaN	NaN	0	0	Median	11840000	0	11840000	3436	585	3261	7952	16859	16859		1	9606
YTFNEDEGELPEWFVQEEK	1	0	Unmodified	2388.0434	0.043387542	448	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	3	1		1		1		22.903	22.903	2	8.831799999999998E-50	16916	DP1063-7	250.46	208.88			NaN	NaN	NaN	0	0	Median	15246000	0	15246000	3437	448	3262	7953;7954	16860;16861;16862	16861		3	9606
YTHAANTVVYSSNK	1	0	Unmodified	1553.7474	0.74742071	433	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				2		13.867	13.867	2;3	2.2949E-11	5097	DP1063-9	187.78	153.69			NaN	NaN	NaN	0	0	Median	44997000	0	44997000	3438	433	3263	7955;7956	16863;16864;16865;16866	16866		4	9606
YTPSGQAGAAASESLFVSNHAY	0	0	Unmodified	2227.0182	0.018175845	87	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		19.849	19.849	2	0.00021838	13189	DP1063-9	115.26	84.923			NaN	NaN	NaN	0	0	Median	0	0	0	3439	87	3264	7957	16867;16868;16869	16867		3	9606
YTPSQQGVAFNSGAK	1	0	Unmodified	1553.7474	0.74742071	367	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3	0			1			16.1	16.1	2	0.0022692	8204	DP1063-8	119.39	91.182			NaN	NaN	NaN	0	0	Median	35797000	0	35797000	3440	367	3265	7958	16870;16871	16871		2	9606
YTVQDESHSEWVSCVR	0	1	Unmodified	1980.8636	0.86358946	305	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				2		17.554	17.554	2;3	1.0976E-17	10016	DP1063-9	196.5	174.26			1.4372	1.5034	NaN	1	0	Median	41099000	13924000	27175000	3441	305	3266	7959;7960	16872;16873;16874;16875;16876	16875		5	9606
YVASYLLAALGGNSSPSAK	1	0	Unmodified	1867.968	0.96797818	97	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	22.636	22.636	3	1.0009E-06	16951	DP1063-10	141.22	119.02			NaN	NaN	NaN	0	0	Median	27154000	0	27154000	3442	97	3267	7961	16877	16877		1	9606
YVCAVTR	0	1	Unmodified	867.42727	0.42727255	572	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		14.042	14.042	2	0.038794	5315	DP1063-9	94.407	51.407			NaN	NaN	NaN	0	0	Median	9866700	0	9866700	3443	572	3268	7962	16878	16878		1	9606
YVDIAIPCNNK	1	0	Unmodified	1305.6387	0.63872189	116	P08865;A0A8I5KQE6	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		18.035	18.035	2	0.031713	10670	DP1063-9	88.948	52.523			NaN	NaN	NaN	0	0	Median	0	0	0	3444	116	3269	7963	16879	16879		1	9606
YVELFLNSTAGASGGAYEHR	0	1	Unmodified	2141.0178	0.017781914	184	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3.5	0.5			1	1		19.411	19.411	3	2.282E-07	12411	DP1063-8	141.6	125.97			2.6042	2.7112	18.317	2	0	Median	136580000	38297000	98278000	3445	184	3270	7964;7965	16880;16881;16882	16881		3	9606
YVIYIER	0	1	Unmodified	954.51747	0.51746776	255	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	yes	no	0	0	0	5	0					1	18.342	18.342	2	0.0017931	11451	DP1063-10	108.24	79.709			8.8645	6.3936	NaN	1	0	Median	160980000	15535000	145450000	3446	255	3271	7966	16883;16884;16885	16883		3	9606
YVLEEAEQLEPR	0	1	Unmodified	1474.7304	0.73037367	454	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	4	0				1		19.606	19.606	2	0.0040963	12851	DP1063-9	123.79	85.225			NaN	NaN	NaN	0	0	Median	10856000	0	10856000	3447	454	3272	7967	16886;16887	16887		2	9606
YVPVKGDHVIGIVTAK	2	0	Unmodified	1694.9719	0.97194134	529	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	1	4	0				1		16.668	16.668	3	0.0052008	8825	DP1063-9	91.789	66.667			NaN	NaN	NaN	0	0	Median	15393000	0	15393000	3448	529	3273	7968	16888	16888		1	9606
YVSFEDR	0	1	Unmodified	914.4134	0.41339662	370	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		16.287	16.287	2	0.033991	8333	DP1063-9	68.915	44.943			0.88917	0.93011	NaN	1	0	Median	31264000	16503000	14761000	3449	370	3274	7969	16889	16889		1	9606
YYPTEDVPR	0	1	Unmodified	1138.5295	0.52948901	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.578	16.578	2	0.0075137	8643	DP1063-9	84.498	67.258			8.7557	9.1588	NaN	1	0	Median	228590000	25559000	203030000	3450	336	3275	7970	16890;16891;16892	16890		3	9606
YYPTEDVPRK	1	1	Unmodified	1266.6245	0.62445203	336	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				1		14.869	14.869	3	0.033523	6417	DP1063-9	68.657	34.913			NaN	NaN	NaN	0	0	Median	25596000	0	25596000	3451	336	3276	7971	16893	16893		1	9606
YYTALYR	0	1	Unmodified	948.47052	0.47051757	338	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				17.235	17.235	2	0.050583	9342	DP1063-7	88.643	33.878			NaN	NaN	NaN	0	0	Median	28202000	0	28202000	3452	338	3277	7972	16894	16894		1	9606
YYVTIIDAPGHR	0	1	Unmodified	1403.7197	0.7197494	309	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	3	1.22	1		1	2		17.98	17.98	2;3	9.8663E-07	10468	DP1063-8	131.42	115.19			1.2375	1.2884	11.438	4	0	Median	205130000	92333000	112800000	3453	309	3278	7973;7974;7975;7976	16895;16896;16897;16898;16899;16900;16901;16902;16903;16904;16905;16906;16907;16908;16909;16910	16899		16	9606
