Sequence	K Count	R Count	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Ratio H/L	Ratio H/L normalized	Ratio H/L variability [%]	Ratio H/L count	Ratio H/L iso-count	Ratio H/L type	Intensity	Intensity L	Intensity H	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAAAAAGAAGGR	0	1	Acetyl (Protein N-term)	1239.632	0.63199703	545	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	1	0	0	4	0				1		20.286	20.286	2	0.0013795	13554	DP1063-4	107.24	78.517			NaN	NaN	NaN	0	0	Median	3033200	0	3033200	0	545	0	0	0	0		1	9606
AAAAAAALQAK	1	0	Unmodified	955.54508	0.5450795	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3.33	0.471			2	1		14.41	14.41	2	2.1525E-05	5831	DP1063-4	133.12	93.453			2.1353	1.478	NaN	1	0	Median	23317000	7986100	15331000	1	259	1	1;2;3	1;2;3;4;5;6	6		6	9606
AAAAAAGAASGLPGPVAQGLK	1	0	Acetyl (Protein N-term)	1789.9686	0.96864688	590	Q96P70	IPO9	Importin-9	yes	yes	1	0	0	2	0		1				21.561	21.561	2	0.00060965	14230	DP1063-2	107.53	74.472			NaN	NaN	NaN	0	0	Median	5316800	0	5316800	2	590	2	4	7	7		1	9606
AAAAELSLLEK	1	0	Acetyl (Protein N-term)	1156.634	0.63395409	59	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	1	0	0	5	0					1	23.347	23.347	2	0.006041	17381	DP1063-5	102.06	69.063			1.6658	1.4101	NaN	1	0	Median	8298300	2640800	5657500	3	59	3	5	8;9	8		2	9606
AAAAVVEFQR	0	1	Acetyl (Protein N-term)	1102.5771	0.57710791	36	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	1	0	0	4	0				1		21.051	21.051	2	0.0068269	14591	DP1063-4	99.802	73.418			2.2718	1.3877	NaN	1	0	Median	8644900	2364000	6281000	4	36	4	6	10;11	10		2	9606
AAAGGGGGGAAAAGR	0	1	Acetyl (Protein N-term)	1112.5323	0.53228298	651	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	1	0	0	5	0					1	13.971	13.971	2	0.0038588	5806	DP1063-5	92.538	59.276			NaN	NaN	NaN	0	0	Median	3820900	0	3820900	5	651	5	7	12;13	12		2	9606
AAAIGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2264.126	0.12595216	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.5	0.5			1	1		20.758	20.758	2;3	1.0288999999999999E-52	14696	DP1063-3	267.93	219.65			NaN	NaN	NaN	0	0	Median	18136000	0	18136000	6	149	6	8;9	14;15;16;17	14		4	9606
AAAMDVDTPSGTNSGAGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1706.7417	0.74174299	394	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	yes	yes	1	1	0	5	0					1	15.939	15.939	2	0.00010133	8231	DP1063-5	134.99	99.448			NaN	NaN	NaN	0	0	Median	4099300	0	4099300	7	394	7	10	18;19	19	486	2	9606
AAANFFSASCVPCADQSSFPK	1	0	Unmodified	2260.9881	0.98813804	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	0	2	0		1				20.709	20.709	2	7.3449E-05	13060	DP1063-2	125.73	98.589		+	NaN	NaN	NaN	0	0	Median	8460900	8460900	0	8	23	8	11	20;21;22	20		3	
AAAPAPEEEMDECEQALAAEPK	1	0	Oxidation (M)	2372.0148	0.014806305	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	1	0	4	0				1		17.637	17.637	2	0.0043356	9989	DP1063-4	95.854	76.176			NaN	NaN	NaN	0	0	Median	3562700	0	3562700	9	218	9	12	23;24;25	24	268	3	9606
AAAQLLQSQAQQSGAQQTK	1	0	Unmodified	1956.0025	0.0024662011	633	Q9NVA2	SEPT11	Septin-11	yes	yes	0	0	0	3	0			1			16.042	16.042	2	2.1848E-150	8245	DP1063-3	367.22	313.97			NaN	NaN	NaN	0	0	Median	6130000	0	6130000	10	633	10	13	26;27	27		2	9606
AADEEAFEDNSEEYIR	0	1	Unmodified	1886.7806	0.78063091	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				18.957	18.957	2	3.0844E-06	10689	DP1063-2	155.08	120.01			NaN	NaN	NaN	0	0	Median	0	0	0	11	336	11	14	28	28		1	9606
AADEEAFEDNSEEYIRR	0	2	Unmodified	2042.8817	0.88174194	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	2	0		1				17.788	17.788	3	0.050027	9124	DP1063-2	58.268	35.422			NaN	NaN	NaN	0	0	Median	10938000	0	10938000	12	336	12	15	29;30	29		2	9606
AADPPAENSSAPEAEQGGAE	0	0	Unmodified	1896.7973	0.79734361	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.316	15.316	2	7.0627E-07	7001	DP1063-4	180.3	161.66			NaN	NaN	NaN	0	0	Median	0	0	0	13	410	13	16	31;32	32		2	9606
AADTQVSETLKR	1	1	Acetyl (Protein N-term)	1359.6994	0.69940789	567	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	1	1	0	2					16.703	16.703	2	0.00029631	6370	DP1063-1	127.83	42.024			NaN	NaN	NaN	0	0	Median	4523700	0	4523700	14	567	14	17;18	33;34;35	34		3	9606
AAECNIVVTQPR	0	1	Unmodified	1356.682	0.68198369	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				16.116	16.116	2	0.0022299	6867	DP1063-2	103.22	76.332			1.7662	1.2831	NaN	1	0	Median	14169000	4472300	9697200	15	452	15	19	36;37	37		2	9606
AAEDDEDDDVDTK	1	0	Unmodified	1436.5427	0.54269205	119	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	0	5	0					1	13.519	13.519	2	6.3153E-06	5321	DP1063-5	175.15	170.69			2.029	1.7175	NaN	1	0	Median	5514400	2049300	3465100	16	119	16	20	38;39;40	39		3	9606
AAEDDEDDDVDTKK	2	0	Unmodified	1564.6377	0.63765507	119	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	1	5	0					1	12.694	12.694	3	0.0003433	4482	DP1063-5	133.15	104.36			1.7664	1.726	NaN	1	0	Median	5665000	1595600	4069400	17	119	17	21	41;42;43;44	42		4	9606
AAEDLFVNIR	0	1	Unmodified	1146.6033	0.60332266	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				20.291	20.291	2	1.363E-05	12504	DP1063-2	138.54	107.47			1.0878	0.79386	NaN	1	0	Median	23836000	9347900	14488000	18	666	18	22	45;46;47;48	45		4	9606
AAEFGEPTSEQTGTAAGK	1	0	Unmodified	1750.801	0.80097243	85	O95425	SVIL	Supervillin	yes	yes	0	0	0	1	0	1					15.801	15.801	2	0.024676	5458	DP1063-1	80.967	43.639			NaN	NaN	NaN	0	0	Median	0	0	0	19	85	19	23	49	49		1	9606
AAELIANSLATAGDGLIELR	0	1	Unmodified	1997.0793	0.079319539	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				2		23.433	23.433	2;3	3.7444E-25	17395	DP1063-4	222.88	184.94			1.4948	0.9504	6.4448	2	0	Median	14034000	5856500	8177900	20	249	20	24;25	50;51;52;53;54;55	51		6	9606
AAEVLVYGAPPGR	0	1	Unmodified	1298.6983	0.69828568	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.19	0.527		14	1	1		25.678	25.678	2;3	5.4776E-05	10794	DP1063-3	142.43	104.34			11.806	8.8136	NaN	1	0	Median	505130000	2771600	502360000	21	524	21	26;27;28;29;30;31;32;33;34;35;36;37;38;39;40;41	56;57;58;59;60;61;62;63;64;65;66;67;68;69;70;71;72;73;74;75;76;77;78;79;80;81	79		26	9606
AAFDDAIAELDTLSEESYK	1	0	Unmodified	2086.9583	0.95826093	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				1		24.742	24.742	2	0.00036504	18922	DP1063-4	133.14	116.39			1.8705	1.2947	NaN	1	0	Median	3146200	1003100	2143200	22	371	22	42	82	82		1	9606
AAGAAEAAVAAVEEVGSAGQFEELLR	0	1	Acetyl (Protein N-term)	2557.266	0.26601069	79	O76003	GLRX3	Glutaredoxin-3	yes	yes	1	0	0	4	0				1		27.117	27.117	3	0.0023587	21314	DP1063-4	77.584	40.839			NaN	NaN	NaN	0	0	Median	0	0	0	23	79	23	43	83	83		1	9606
AAGPSLSHTSGGTQSK	1	0	Unmodified	1484.7219	0.72193424	221	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	3	0			1			12.753	12.753	3	0.00033168	3992	DP1063-3	93.478	71.704			3.0144	2.4206	NaN	1	0	Median	3103000	898790	2204200	24	221	24	44	84;85	84		2	9606
AAGTAAALAFLSQESR	0	1	Acetyl (Protein N-term)	1604.8158	0.81583463	75	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	5	0					1	25.171	25.171	2	1.3184E-05	19388	DP1063-5	174.73	142.48			2.6593	1.9861	NaN	1	0	Median	7570300	2184100	5386200	25	75	25	45	86;87;88;89;90;91	90		6	9606
AAGTLYTYPENWR	0	1	Acetyl (Protein N-term)	1582.7416	0.74160705	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	3.5	0.5			1	1		22.632	22.632	2	2.3923E-79	16446	DP1063-4	295.32	295.32			1.9061	1.4295	15.88	2	0	Median	75446000	23772000	51674000	26	218	26	46;47	92;93;94;95;96;97;98;99	99		8	9606
AAGVEAAAEVAATEIK	1	0	Acetyl (Protein N-term)	1541.7937	0.7937022	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	3.5	1.12		1	1	1	1	24.244	24.244	2	1.2930999999999998E-40	17592	DP1063-2	244.73	209.31			1.2324	1.0208	7.1988	4	0	Linear	64138000	27822000	36316000	27	323	27	48;49;50;51	100;101;102;103;104;105;106;107;108;109;110;111;112;113;114	100		15	9606
AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPK	2	0	Acetyl (Protein N-term);Oxidation (M)	3406.6198	0.61984352	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	1	1	2	0		1				24.322	24.322	3	1.8136000000000002E-25	17639	DP1063-2	144.06	122.6			0.95448	0.91178	NaN	1	0	Median	17611000	8498500	9113000	28	323	28	52	115;116;117;118;119;120;121	117	393	7	9606
AAGVNVEPFWPGLFAK	1	0	Unmodified	1701.8879	0.88787736	113	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	23.81	23.81	2	0.0014945	17848	DP1063-5	147.62	147.62			1.4527	1.2297	NaN	1	0	Median	7803900	2579400	5224500	29	113	29	53	122;123;124;125	122		4	9606
AAHSEGNTTAGLDMR	0	1	Oxidation (M)	1545.6842	0.68416853	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	3	0			2			13.173	13.173	2;3	0.00048221	4460	DP1063-3	81.992	81.992			4.2666	3.2982	3.1288	2	0	Median	41482000	7780800	33702000	30	419	30	54;55	126;127;128;129;130;131	126	520	6	9606
AAHSEGNTTAGLDMR	0	1	Unmodified	1529.6893	0.68925391	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			14.54	14.54	3	0.0065761	6205	DP1063-3	83.823	59.837			NaN	NaN	NaN	0	0	Median	12935000	0	12935000	31	419	30	56	132	132		1	9606
AAIISAEGDSK	1	0	Unmodified	1060.5401	0.5400537	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		14.883	14.883	2	0.00049972	6427	DP1063-4	122.96	83.709			1.436	0.99399	NaN	1	0	Median	8367200	4025000	4342100	32	249	31	57	133;134;135	134		3	9606
AALAATGAASGGGGGGGGAGSR	0	1	Unmodified	1629.7819	0.78190874	3	A6NKD9	CCDC85C	Coiled-coil domain-containing protein 85C	yes	yes	0	0	0	3	0			1			14.067	14.067	2	0.00014911	5564	DP1063-3	144.8	100.24			NaN	NaN	NaN	0	0	Median	2973100	0	2973100	33	3	32	58	136;137	136		2	9606
AALEDTLAETEAR	0	1	Unmodified	1388.6783	0.6783381	16	CON__P08727;P08727	KRT19	Keratin, type I cytoskeletal 19	yes	no	0	0	0	4	0				1		18.309	18.309	2	0.0069086	10926	DP1063-4	94.767	41.44		+	NaN	NaN	NaN	0	0	Median	4193500	0	4193500	34	16	33	59	138;139	139		2	9606
AALGRPGSGPR	0	2	Acetyl (Protein N-term)	1079.5836	0.58359027	524	Q4KMQ1	TPRN	Taperin	yes	yes	1	0	1	2	0		1				15.246	15.246	2	0.045482	5704	DP1063-2	58.246	8.8047			NaN	NaN	NaN	0	0	Median	34954000	0	34954000	35	524	34	60	140	140		1	9606
AALMESQGQQQEER	0	1	Oxidation (M)	1619.7209	0.72094797	496	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	1	0	1	0	1					13.637	13.637	2	0.003887	3039	DP1063-1	107.06	61.897			NaN	NaN	NaN	0	0	Median	469760	0	469760	36	496	35	61	141	141	629	1	9606
AALSEEELEKK	2	0	Unmodified	1245.6452	0.64524705	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	1	0	1					15.006	15.006	2	0.012635	4577	DP1063-1	89.08	43.481			NaN	NaN	NaN	0	0	Median	1453000	0	1453000	37	442	36	62	142	142		1	9606
AALVLEDGSVLR	0	1	Acetyl (Protein N-term)	1283.7085	0.70851601	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	1	0	0	1.5	0.5	1	1				24.438	24.438	2	0.0011173	15422	DP1063-1	133.13	46.998			2.2619	1.7949	NaN	1	0	Median	15006000	3886700	11119000	38	222	37	63;64	143;144;145;146;147	146		5	9606
AAPGAEFAPNKR	1	1	Unmodified	1227.636	0.63601977	505	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	3	0			1			14.416	14.416	3	0.011807	6090	DP1063-3	54.199	54.199			1.5425	1.399	NaN	1	0	Median	18833000	6566800	12266000	39	505	38	65	148;149	149		2	9606
AASAAAAELQASGGPR	0	1	Acetyl (Protein N-term)	1468.727	0.72701962	626	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	1	0	0	4	0				1		19.828	19.828	2	0.00016859	12957	DP1063-4	135.02	58.736			NaN	NaN	NaN	0	0	Median	7197500	0	7197500	40	626	39	66	150;151	150		2	9606
AASAAAASAAAASAASGSPGPGEGSAGGEKR	1	1	Acetyl (Protein N-term)	2584.2113	0.21134936	466	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	1	2	0		1				18.466	18.466	2	1.4096999999999998E-23	10027	DP1063-2	172.84	117.12			NaN	NaN	NaN	0	0	Median	0	0	0	41	466	40	67	152	152		1	9606
AASIFGGAKPVDTAAR	1	1	Unmodified	1530.8154	0.8154407	203	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	1	2	0		1				16.749	16.749	3	0.033079	7656	DP1063-2	72.428	41.554			NaN	NaN	NaN	0	0	Median	11742000	0	11742000	42	203	41	68	153	153		1	9606
AASQAVEEMR	0	1	Acetyl (Protein N-term);Oxidation (M)	1148.5132	0.51318702	52	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	1	1	0	4	0				2		15.758	15.758	2	0.0093485	7605	DP1063-4	96.665	45.599			NaN	NaN	NaN	0	0	Median	0	0	0	43	52	42	69;70	154;155	154	44	2	9606
AASTASHRPIK	1	1	Acetyl (Protein N-term)	1179.636	0.63601977	273	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	1	0	1	4	0				1		12.928	12.928	2	0.00098086	4101	DP1063-4	116.3	73.956			NaN	NaN	NaN	0	0	Median	3892800	0	3892800	44	273	43	71	156;157	157		2	9606
AATASAGAGGIDGKPR	1	1	Acetyl (Protein N-term)	1440.7321	0.732105	440	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	4	0				1		15.286	15.286	2	0.0095872	6816	DP1063-4	123.64	88.866			0.91745	0.89199	NaN	1	0	Median	32915000	16628000	16287000	45	440	44	72	158;159;160	158		3	9606
AATGEEVSAEDLGGADLHCR	0	1	Unmodified	2056.912	0.91199621	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			6	2		23.787	23.787	2;3	0	9772	DP1063-3	492.5	492.5			1.509	1.5917	21.668	4	0	Linear	1991399999.9999998	787050000	1204400000	46	624	45	73;74;75;76;77;78;79;80	161;162;163;164;165;166;167;168;169;170;171;172;173;174;175;176;177;178;179;180	167		20	9606
AAVATFLQSVQVPEFTPK	1	0	Unmodified	1932.0357	0.03566381	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				23.146	23.146	2	2.5736E-05	16191	DP1063-2	159.12	159.12			1.9016	1.5909	NaN	1	0	Median	14243000	5278600	8964400	47	195	46	81	181;182;183;184	183		4	9606
AAVEEGIVLGGGCALLR	0	1	Unmodified	1683.8978	0.89779012	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.178	21.178	2	1.1331E-05	15311	DP1063-3	167.11	135.89			2.7136	2.0899	NaN	1	0	Median	46288000	11677000	34611000	48	151	47	82	185	185		1	9606
AAVENLPTFLVELSR	0	1	Unmodified	1657.9039	0.90392136	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				24.349	24.349	2	2.7117000000000003E-20	17718	DP1063-2	209.19	209.19			2.8441	2.0779	NaN	1	0	Median	24168000	6082000	18086000	49	495	48	83	186;187;188;189;190	190		5	9606
AAVESLGFILFR	0	1	Unmodified	1321.7394	0.73942221	597	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	2	0		1				24.077	24.077	2	0.00079107	17371	DP1063-2	118.71	57.739			2.6519	2.0272	NaN	1	0	Median	6086600	1355900	4730700	50	597	49	84	191;192;193;194	191		4	9606
AAVIGDVIR	0	1	Unmodified	912.53927	0.53926584	629	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				17.907	17.907	2	0.050684	9251	DP1063-2	65.246	14.543			1.7813	1.2955	NaN	1	0	Median	22837000	8068200	14769000	51	629	50	85	195	195		1	9606
AAVLQQVLER	0	1	Acetyl (Protein N-term)	1167.6612	0.66117189	161	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1	0	1					25.261	25.261	2	0.0081804	16309	DP1063-1	85.676	35.635			NaN	NaN	NaN	0	0	Median	1541700	1541700	0	52	161	51	86	196;197	196		2	9606
AAVPSGASTGIYEALELR	0	1	Unmodified	1803.9367	0.93667805	123	P06733;P13929;P09104	ENO1;ENO3;ENO2	Alpha-enolase;Beta-enolase;Gamma-enolase	yes	no	0	0	0	4.5	0.5				1	1	21.521	21.521	2	7.653200000000001E-24	15155	DP1063-4	214	214			2.2534	1.7931	NaN	1	0	Median	72119000	19368000	52751000	53	123	52	87;88	198;199;200;201;202;203	201		6	9606
AAYFGIYDTAK	1	0	Unmodified	1218.5921	0.59208927	108	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	4	0				1		19.501	19.501	2	1.0277E-05	12511	DP1063-4	143.7	132.9			1.9411	1.3436	NaN	1	0	Median	47782000	15620000	32162000	54	108	53	89	204;205;206;207	205		4	9606
AAYFGVYDTAK	1	0	Unmodified	1204.5764	0.57643921	159;158	P12235;P12236	SLC25A4;SLC25A6	ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		18.695	18.695	2	0.050664	11533	DP1063-4	61.56	38.037			1.1307	0.78268	NaN	1	0	Median	14428000	6179100	8249000	55	158;159	54	90	208	208		1	9606
ACANPAAGSVILLENLR	0	1	Unmodified	1767.9302	0.93015288	95	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	4	0				1		22.118	22.118	2	0.0011947	15903	DP1063-4	138.42	103.65			NaN	NaN	NaN	0	0	Median	4669900	0	4669900	56	95	55	91	209	209		1	9606
ACLDTAVENMPSLK	1	0	Oxidation (M)	1563.7273	0.7272789	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	1	0	2					17.34	17.34	2	0.0048591	7042	DP1063-1	101.93	66.418			NaN	NaN	NaN	0	0	Median	3283700	0	3283700	57	303	56	92;93	210;211;212	211	356	3	9606
ACQSIYPLHDVFVR	0	1	Unmodified	1703.8454	0.84536062	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				2		19.695	19.695	2;3	0.0018988	12840	DP1063-4	140.78	108.28			1.961	1.2832	8.1732	2	0	Median	26223000	7569400	18653000	58	355	57	94;95	213;214;215;216	216		4	9606
ACTELGIR	0	1	Unmodified	918.4593	0.45930096	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		15.897	15.897	2	0.00047415	6564	DP1063-2	132.96	31.269			1.3975	0.95683	20.743	3	0	Median	485980000	200880000	285100000	59	154	58	96;97;98	217;218;219;220;221;222;223;224;225	219		9	9606
ADAEGESDLENSR	0	1	Unmodified	1391.5801	0.58008061	673	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	0	2					14.763	14.763	2	0.00049479	4289	DP1063-1	117.25	84.93			NaN	NaN	NaN	0	0	Median	0	0	0	60	673	59	99;100	226;227	227		2	9606
ADATNVNNWHWTER	0	1	Unmodified	1712.7655	0.76553039	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				2		18.015	18.015	2;3	3.0316E-14	10496	DP1063-4	207.95	175.89			1.4163	0.94348	31.736	2	0	Median	37272000	15438000	21834000	61	86	60	101;102	228;229;230;231;232;233;234;235	230		8	9606
ADAVQDSEMVELVELEIR	0	1	Oxidation (M)	2060.9936	0.99360058	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	1	0	4	0				1		22.075	22.075	2	0.00069366	15804	DP1063-4	121.42	92.055			NaN	NaN	NaN	0	0	Median	2538600	0	2538600	62	306	61	103	236;237	237	374	2	9606
ADEASELACPTPK	1	0	Unmodified	1387.6289	0.62894506	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.015	16.015	2	0.0008474	5705	DP1063-1	139.31	126.81			1.9668	1.5435	NaN	1	0	Median	7988700	2408700	5579900	63	303	62	104	238;239;240;241	241		4	9606
ADEAYLIGR	0	1	Unmodified	1006.5084	0.50835964	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.33	1.25		1	1		1	17.799	17.799	2	1.175E-10	9138	DP1063-2	172.15	113.23			1.3842	1.1898	26.087	3	0	Plateau	211880000	91817000	120060000	64	154	63	105;106;107	242;243;244;245;246;247;248	244		7	9606
ADEGISFR	0	1	Unmodified	893.4243	0.42429566	446	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	16.784	16.784	2	0.018939	9200	DP1063-5	96.492	53.368			2.7654	2.0654	NaN	1	0	Median	57377000	14442000	42934000	65	446	64	108	249;250;251;252	251		4	9606
ADFAQACQDAGVR	0	1	Unmodified	1407.6201	0.62011171	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.42	1.04	1	8	1	1	1	18.654	18.654	2	1.5603E-08	8937	DP1063-3	187.16	152			1.5641	1.2028	8.7615	4	0	Linear	211500000	82337000	129160000	66	154	65	109;110;111;112;113;114;115;116;117;118;119;120	253;254;255;256;257;258;259;260;261;262;263;264;265;266;267;268;269;270;271;272;273;274;275;276;277	266		25	9606
ADFDDRVSDEEKVR	1	2	Acetyl (Protein N-term)	1721.7857	0.78565671	328	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	1	0	2	4	0				1		17.106	17.106	3	0.0022582	9303	DP1063-4	86.756	62.822			NaN	NaN	NaN	0	0	Median	10443000	0	10443000	67	328	66	121	278;279	279		2	9606
ADGELNVDSLITR	0	1	Acetyl (Protein N-term)	1443.7205	0.72053726	366	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	4	0				1		23.099	23.099	2	0.0015537	17024	DP1063-4	130.56	52.465			3.1039	1.8951	NaN	1	0	Median	8558100	1556200	7001900	68	366	67	122	280;281	280		2	9606
ADGQVAELLLR	0	1	Acetyl (Protein N-term)	1225.6667	0.6666512	665	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	1	0	0	3.5	0.5			1	1		24.213	24.213	2	1.6777E-19	19089	DP1063-3	212.03	212.03			1.3961	1.0107	NaN	1	0	Median	20747000	8198200	12549000	69	665	68	123;124	282;283;284;285;286	285		5	9606
ADGYEPPVQESV	0	0	Unmodified	1289.5776	0.57756142	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.685	18.685	2	0.041478	11447	DP1063-4	76.17	47.252			NaN	NaN	NaN	0	0	Median	0	0	0	70	355	69	125	287	287		1	9606
ADGYVLEGK	1	0	Unmodified	950.47091	0.4709115	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	16.01	16.01	2	0.04381	8272	DP1063-5	66.299	34.538			1.647	1.3942	NaN	1	0	Median	20676000	7983100	12693000	71	368	70	126	288;289	288		2	9606
ADILEDKDGK	2	0	Unmodified	1102.5506	0.55061839	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3	0.816		1	1	1		14.173	14.173	2	2.0228E-05	5711	DP1063-3	131.62	92.363			1.2056	1.1253	7.8115	3	0	Plateau	86508000	37770000	48738000	72	323	71	127;128;129	290;291;292;293;294;295;296;297;298;299;300	297		11	9606
ADIQTER	0	1	Acetyl (Protein N-term)	873.41921	0.41921028	376	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	5	0					1	15.833	15.833	2	0.001413	8102	DP1063-5	162.07	47.527			NaN	NaN	NaN	0	0	Median	27087000	0	27087000	73	376	72	130	301;302	302		2	9606
ADKDYHFKVDNDENEHQLSLR	2	1	Unmodified	2572.1942	0.19424273	125	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4	0				2		16.116	16.116	4;5	1.886E-05	8131	DP1063-4	133.24	101.32			2.2005	2.2752	NaN	1	0	Median	24603000	5412500	19191000	74	125	73	131;132	303;304;305;306	306		4	9606
ADKEAAFDDAVEER	1	1	Acetyl (Protein N-term)	1606.7111	0.71109479	453	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	1	0	1	3.5	0.5			1	1		18.284	18.284	2	0.00014018	11311	DP1063-3	153.81	117.38			NaN	NaN	NaN	0	0	Median	18369000	0	18369000	75	453	74	133;134	307;308;309;310;311	308		5	9606
ADLDKLNIDSIIQR	1	1	Acetyl (Protein N-term)	1654.889	0.88899957	260	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	4	0.632			1	3	1	24.154	24.154	2;3	4.7158E-99	16637	DP1063-4	318.47	274.05			40.706	39.577	NaN	1	0	Median	108440000	1381400	107060000	76	260	75	135;136;137;138;139	312;313;314;315;316;317	313		6	9606
ADLDVSGPK	1	0	Unmodified	900.45526	0.45526144	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1.5	0.5	1	1				15.12	15.12	2	0.02009	4688	DP1063-1	80.438	0			15.572	12.563	NaN	1	0	Median	29855000	910820	28944000	77	455	76	140;141	318;319	318		2	9606
ADLEEQLSDEEKVR	1	1	Acetyl (Protein N-term)	1701.8057	0.80572345	295	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	1	0	1	4	0				1		20.025	20.025	2	6.221E-05	13263	DP1063-4	164.81	104.73			NaN	NaN	NaN	0	0	Median	7832000	0	7832000	78	295	77	142	320;321	320		2	9606
ADLINNLGTIAK	1	0	Unmodified	1241.698	0.69795133	135;132;529	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2	0		1				19.864	19.864	2	0.0012678	11877	DP1063-2	123.51	94.364			NaN	NaN	NaN	0	0	Median	104410000	0	104410000	79	135;132;529	78	143	322;323	322		2	9606
ADLLLSTQPGREEGSPLELER	0	2	Unmodified	2309.1863	0.18630381	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	2.5	0.5		1	1			19.945	19.945	3	0.00325	12040	DP1063-2	87.24	46.038			NaN	NaN	NaN	0	0	Median	31936000	0	31936000	80	134	79	144;145	324;325;326	324		3	9606
ADLSGITK	1	0	Unmodified	803.43888	0.43888309	21	CON__P34955			yes	yes	0	0	0	3	0			1			15.514	15.514	2	0.0081024	7503	DP1063-3	108.46	45.746		+	NaN	NaN	NaN	0	0	Median	35052000	35052000	0	81	21	80	146	327;328	328		2	
ADQLTEEQIAEFK	1	0	Acetyl (Protein N-term)	1562.7464	0.74641766	150	P0DP25;P0DP24;P0DP23			yes	no	1	0	0	5	0					1	21.967	21.967	2	8.5854E-13	15761	DP1063-5	199.82	162.13			4.8797	4.1307	NaN	1	0	Median	13664000	2915300	10748000	82	150	81	147	329;330	330		2	9606
ADRDESSPYAAMLAAQDVAQR	0	2	Oxidation (M)	2280.0441	0.044073019	372	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	1	5	0					1	17.666	17.666	3	3.3668E-06	10300	DP1063-5	130.83	108.46			1.9123	1.6272	NaN	1	0	Median	23221000	6804400	16416000	83	372	82	148	331;332;333;334	332	467	4	9606
ADRDESSPYAAMLAAQDVAQR	0	2	Unmodified	2264.0492	0.049158397	372	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	19.708	19.708	3	0.015217	13032	DP1063-5	75.112	38.985			NaN	NaN	NaN	0	0	Median	4185400	0	4185400	84	372	82	149	335	335		1	9606
ADSVLIIETVPGFPPAPPAPGAAQIR	0	1	Unmodified	2583.4061	0.40607341	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.67	0.816		5	2	2		23.803	23.803	2;3	1.1986E-34	16255	DP1063-2	238.88	157.35			NaN	NaN	NaN	0	0	Median	119480000	0	119480000	85	524	83	150;151;152;153;154;155;156;157;158	336;337;338;339;340;341;342;343;344;345;346;347;348;349;350;351	340		16	9606
ADSVVVLLCR	0	1	Unmodified	1130.6118	0.61177885	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				19.988	19.988	2	0.0033947	12075	DP1063-2	107.69	68.672			NaN	NaN	NaN	0	0	Median	5271200	0	5271200	86	569	84	159	352	352		1	9606
ADVDISGPK	1	0	Unmodified	900.45526	0.45526144	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	0	1					15.145	15.145	2	0.011941	4670	DP1063-1	91.069	8.7898			15.572	12.563	NaN	1	0	Median	12618000	910820	11708000	87	455	85	160	353	353		1	9606
ADVVVSGPK	1	0	Unmodified	870.48108	0.48108226	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1.5	0.5	1	1				14.527	14.527	2	0.028549	4807	DP1063-2	85.676	54.372			NaN	NaN	NaN	0	0	Median	10198000	0	10198000	88	455	86	161;162	354;355	355		2	9606
AEAEAQAEELSFPR	0	1	Unmodified	1546.7264	0.72635092	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.09	0.468	1	40	1	2		26.704	26.704	2;3	6.1585E-99	10320	DP1063-2	313.52	313.52			1.2062	0.96627	16.963	15	0	Median	1854099999.9999998	786700000	1067399999.9999999	89	154	87	163;164;165;166;167;168;169;170;171;172;173;174;175;176;177;178;179;180;181;182;183;184;185;186;187;188;189;190;191;192;193;194;195;196;197;198;199;200;201;202;203;204;205;206	356;357;358;359;360;361;362;363;364;365;366;367;368;369;370;371;372;373;374;375;376;377;378;379;380;381;382;383;384;385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400;401;402;403;404;405;406;407;408;409;410;411;412;413;414;415;416;417;418;419;420;421;422;423;424;425;426;427;428;429;430;431;432;433;434;435;436;437;438;439;440;441;442;443	362		88	9606
AEAESLYQSK	1	0	Unmodified	1124.535	0.53496832	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	0.816		1	1	1		15.137	15.137	2	1.3041999999999998E-19	6963	DP1063-3	243.29	188.51		+	NaN	NaN	NaN	0	0	Median	113070000	113070000	0	90	101	88	207;208;209	444;445;446;447;448;449	446		6	9606
AEAESMYQIK	1	0	Oxidation (M)	1184.5383	0.53833914	15	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	4	0				1		15.172	15.172	2	0.012163	6801	DP1063-4	71.379	29.931		+	2.0643	1.4289	NaN	1	0	Median	3908800	1241000	2667800	91	15	89	210	450	450	16	1	9606
AEAGAGSATEFQFR	0	1	Unmodified	1440.6634	0.66335673	293	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	5	0					1	18.119	18.119	2	0.0021209	10897	DP1063-5	152.69	152.69			1.7747	1.3254	NaN	1	0	Median	19475000	7462400	12012000	92	293	90	211	451;452;453;454	451		4	9606
AEAGDNLGALVR	0	1	Unmodified	1184.6149	0.61494998	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		18.186	18.186	2	0.00025468	10769	DP1063-4	152.11	112.26			1.8243	1.2522	NaN	1	0	Median	21545000	6731600	14814000	93	306	91	212	455;456	456		2	9606
AEAGVPAEFSIWTR	0	1	Unmodified	1532.7623	0.7623425	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					21.916	21.916	2	0.00021343	12699	DP1063-1	163.46	118.82			NaN	NaN	NaN	0	0	Median	10755000	0	10755000	94	190	92	213	457;458	458		2	9606
AEASSGDHPTDTEMKEEQK	2	0	Oxidation (M)	2104.8855	0.88550669	437	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	1	1	3	0			1			12.573	12.573	4	0.0002828	3809	DP1063-3	78.244	72.743			2.5437	2.2822	NaN	1	0	Median	5267200	2292300	2974900	95	437	93	214	459	459	548	1	9606
AEDKEWMPVTK	2	0	Oxidation (M)	1348.6333	0.63330216	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	1	4	0				2		14.907	14.907	2;3	0.00035949	6462	DP1063-4	103.46	103.46			1.9236	1.9977	NaN	1	0	Median	24974000	6272700	18701000	96	172	94	215;216	460;461;462;463	460	220	4	9606
AEDNADTLALVFEAPNQEK	1	0	Unmodified	2073.9855	0.98547873	157	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				2		21.96	21.96	2	0.0040136	15679	DP1063-4	114.31	74.579			NaN	NaN	NaN	0	0	Median	0	0	0	97	157	95	217;218	464;465	465		2	9606
AEEGIAAGGVMDVNTALQEVLK	1	0	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	206	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	5	0					2	25.996	25.996	2	1.187E-05	20273	DP1063-5	132.81	81.798			NaN	NaN	NaN	0	0	Median	2234000	0	2234000	98	206	96	219;220	466;467;468;469;470	469	260	5	9606
AEEILEK	1	0	Unmodified	830.43855	0.43854874	399	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	14.785	14.785	2	0.00052578	6872	DP1063-5	143.02	63.08			1.9642	1.6627	NaN	1	0	Median	40064000	14582000	25482000	99	399	97	221	471;472;473;474	472		4	9606
AEEQPQVELFVK	1	0	Acetyl (Protein N-term)	1457.7402	0.74021007	37	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	1	0	0	4	0				1		22.163	22.163	2	0.0071091	15907	DP1063-4	97.813	67.127			3.2985	2.2832	NaN	1	0	Median	6869700	1373200	5496500	100	37	98	222	475	475		1	9606
AEFTSYKETASSR	1	1	Acetyl (Protein N-term)	1517.6998	0.69980182	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	1	0	1	2	0		1				17.531	17.531	2	0.0010727	8787	DP1063-2	100.88	53.576			NaN	NaN	NaN	0	0	Median	7500400	0	7500400	101	547	99	223	476;477	476		2	9606
AEFVEVTK	1	0	Unmodified	921.48075	0.48074791	14	CON__P02769			yes	yes	0	0	0	2	1.41	2			1		16.241	16.241	2	5.5813E-18	6014	DP1063-1	201.49	122.03		+	NaN	NaN	NaN	0	0	Median	84811000	84811000	0	102	14	100	224;225;226	478;479;480;481	479		4	9606
AEFVEVTKLVTDLTK	2	0	Unmodified	1691.9346	0.93455278	14	CON__P02769			yes	yes	0	0	1	2.5	0.5		1	1			22.575	22.575	3	4.5746E-17	17051	DP1063-3	206.45	160.25		+	NaN	NaN	NaN	0	0	Median	19817000	19817000	0	103	14	101	227;228	482;483;484;485	485		4	9606
AEGLQVGQDAR	0	1	Unmodified	1142.568	0.56799978	560	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	2	0		1				15.216	15.216	2	0.035086	5682	DP1063-2	78.655	17.745			NaN	NaN	NaN	0	0	Median	0	0	0	104	560	102	229	486	486		1	9606
AEGPEVDVNLPK	1	0	Unmodified	1266.6456	0.6455814	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1.5	0.5	1	1				17.999	17.999	2	0.00095386	9325	DP1063-2	125.97	80.808			NaN	NaN	NaN	0	0	Median	35086000	0	35086000	105	455	103	230;231	487;488;489;490	489		4	9606
AEGPGRGDEPSPS	0	1	Unmodified	1254.5477	0.54765827	634	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	1	3	0			1			13.407	13.407	2	0.014737	4752	DP1063-3	78.513	78.513			1.7361	1.3365	NaN	1	0	Median	7038200	2902300	4135900	106	634	104	232	491;492;493	491		3	9606
AEGSSTASSGSQLAEGK	1	0	Unmodified	1565.7169	0.71690845	637	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	2	0		1				14.028	14.028	2	0.00051157	4167	DP1063-2	134.04	89.618			NaN	NaN	NaN	0	0	Median	3319400	0	3319400	107	637	105	233	494;495	495		2	9606
AELDDTPMR	0	1	Oxidation (M)	1062.4652	0.4651742	199	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	2	0		1				14.386	14.386	2	0.0076904	4592	DP1063-2	87.476	32.927			1.9914	1.4416	NaN	1	0	Median	17243000	4675200	12568000	108	199	106	234	496;497;498	497	253	3	9606
AELNEFLTR	0	1	Unmodified	1091.5611	0.56112349	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4.5	0.5				1	1	19.307	19.307	2	6.6525E-11	12267	DP1063-4	174.52	128.09			2.4809	1.906	10.842	2	0	Median	81795000	22085000	59710000	109	200	107	235;236	499;500;501;502;503;504;505	499		7	9606
AELQMLLEEEIPSGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1743.8601	0.86006721	551	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	0	3	0			1			26.055	26.055	2	0.0020792	21200	DP1063-3	92.295	57.522			NaN	NaN	NaN	0	0	Median	1550000	0	1550000	110	551	108	237	506;507;508	508	679	3	9606
AELQMLLEEEIPSGKR	1	1	Acetyl (Protein N-term);Oxidation (M)	1899.9612	0.96117824	551	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	1	3	0			1			23.98	23.98	2	0.00061244	18843	DP1063-3	147.7	116.04			1.2023	1.0905	NaN	1	0	Median	9450100	4052900	5397300	111	551	109	238	509;510;511	511	679	3	9606
AENFFILR	0	1	Unmodified	1008.5393	0.53926584	346	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	5	0					1	20.989	20.989	2	0.014064	14653	DP1063-5	104.45	56.705			1.5853	1.184	NaN	1	0	Median	4422500	1823300	2599200	112	346	110	239	512;513	513		2	9606
AEPASVAAESLAGSR	0	1	Acetyl (Protein N-term)	1456.7158	0.71578623	628	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	1	0	0	4	0				1		20.555	20.555	2	0.0011373	13926	DP1063-4	110.64	74.678			NaN	NaN	NaN	0	0	Median	0	0	0	113	628	111	240	514	514		1	9606
AEPVEVVAPR	0	1	Unmodified	1065.5819	0.58185893	142	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				16.348	16.348	2	0.0079737	7165	DP1063-2	88.819	63.896			1.6706	1.2142	NaN	1	0	Median	13826000	5613500	8212700	114	142	112	241	515;516	516		2	9606
AEPYCSVLPGFTFIQHLPLSER	0	1	Unmodified	2560.2784	0.27843005	609	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				23.706	23.706	3	0.000631	16934	DP1063-2	73.315	54.105			3.0662	2.3513	NaN	1	0	Median	5863400	1573700	4289700	115	609	113	242	517;518	518		2	9606
AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK	2	0	Acetyl (Protein N-term)	3605.6758	0.6757785	326	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	1	0	1	5	0					1	20.139	20.139	3	6.8999E-05	13473	DP1063-5	56.46	56.46			1.4671	1.4335	NaN	1	0	Median	10266000	3709700	6556700	116	326	114	243	519;520;521;522	519		4	9606
AESSDKLYR	1	1	Acetyl (Protein N-term)	1109.5353	0.53530267	142	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	1	2	0		1				15.561	15.561	2	0.00034166	6100	DP1063-2	136.8	57.328			1.9668	1.8528	NaN	1	0	Median	11080000	3512900	7567000	117	142	115	244	523;524	523		2	9606
AETECQNTEYQQLLDIK	1	0	Unmodified	2081.9575	0.95754942	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.67	1.25	1		1	1		20.422	20.422	2	1.498E-90	14182	DP1063-3	322.18	275.12		+	NaN	NaN	NaN	0	0	Median	86192000	86192000	0	118	19	116	245;246;247	525;526;527;528;529;530;531	528		7	9606
AEVNTIPGFDGVVK	1	0	Unmodified	1444.7562	0.75619449	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.898	19.898	2	4.0942E-05	13525	DP1063-3	163.12	108.05			1.346	1.0808	NaN	1	0	Median	58044000	26157000	31887000	119	110	117	248	532;533;534;535	533		4	9606
AEVNTIPGFDGVVKDAEEAVR	1	1	Unmodified	2215.1121	0.11207623	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			22.013	22.013	3	5.0875E-06	16370	DP1063-3	114.9	114.9			1.3863	1.2574	NaN	1	0	Median	42381000	18517000	23864000	120	110	118	249	536;537	536		2	9606
AEYLASIFGTEK	1	0	Acetyl (Protein N-term)	1369.6765	0.67654718	430	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	0	4	0				1		26.977	26.977	2	0.0013202	21215	DP1063-4	103.31	65.712			NaN	NaN	NaN	0	0	Median	1397600	0	1397600	121	430	119	250	538;539	539		2	9606
AEYLASIFGTEKDK	2	0	Acetyl (Protein N-term)	1612.7985	0.79845323	430	Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	1	0	1	4	0				1		24.598	24.598	2	0.040772	18756	DP1063-4	62.14	19.93			NaN	NaN	NaN	0	0	Median	1004100	0	1004100	122	430	120	251	540	540		1	9606
AFADALEVIPMALSENSGMNPIQTMTEVR	0	1	3 Oxidation (M)	3182.4934	0.49338614	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	3	0	3	0			1			23.767	23.767	3	5.378E-05	18580	DP1063-3	77.322	46.738			NaN	NaN	NaN	0	0	Median	3525100	0	3525100	123	301	121	252	541;542	541	349;350;351	2	9606
AFADAMEVIPSTLAENAGLNPISTVTELR	0	1	Oxidation (M)	3045.5329	0.53286642	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	3	0			1			24.15	24.15	3	2.9899E-07	19041	DP1063-3	109.08	84.468			NaN	NaN	NaN	0	0	Median	4591900	0	4591900	124	320	122	253	543	543	385	1	9606
AFAVGVQQVLLK	1	0	Unmodified	1271.7602	0.76015765	84	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				20.761	20.761	2	0.053205	13150	DP1063-2	71.692	35.135			NaN	NaN	NaN	0	0	Median	0	0	0	125	84	123	254	544	544		1	9606
AFENDVDALCNLR	0	1	Unmodified	1535.7038	0.70384134	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.21	0.558			12	1	1	20.416	20.416	2	3.5261E-13	14196	DP1063-3	200.71	173.74			1.5333	1.2652	17.018	3	0	Median	426950000	163330000	263620000	126	111	124	255;256;257;258;259;260;261;262;263;264;265;266;267;268	545;546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565	547		21	9606
AFFSEVER	0	1	Unmodified	983.47125	0.47124585	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	4	0				1		18.4	18.4	2	0.010207	11031	DP1063-4	112.17	74.038			2.9578	1.8859	NaN	1	0	Median	12092000	3138600	8953700	127	659	125	269	566;567	566		2	9606
AFGPGLQGGSAGSPAR	0	1	Unmodified	1428.711	0.71097563	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				16.653	16.653	2	0.029203	7554	DP1063-2	82.362	51.076			NaN	NaN	NaN	0	0	Median	9225100	0	9225100	128	190	126	270	568	568		1	9606
AFHNEAQVNPER	0	1	Unmodified	1410.664	0.66402543	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3.25	0.433			3	1		13.888	13.888	2;3	0.00084469	5465	DP1063-3	98.407	43.623			2.3939	1.5701	NaN	1	0	Median	29717000	12828000	16889000	129	179	127	271;272;273;274	569;570;571;572;573;574	572		6	9606
AFHNEAQVNPERK	1	1	Unmodified	1538.759	0.75898845	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	1	3	0			1			13.081	13.081	3	9.8596E-05	4333	DP1063-3	115.8	90.627			3.4265	3.1078	NaN	1	0	Median	12284000	2744100	9539700	130	179	128	275	575;576	575		2	9606
AFITNIPFDVK	1	0	Unmodified	1263.6863	0.68632401	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0.816		1	1	1		21.74	21.74	2	8.7397E-07	14402	DP1063-2	162.64	131.41			1.2038	1.0332	16.906	3	0	Plateau	100010000	43666000	56346000	131	323	129	276;277;278	577;578;579;580;581;582;583;584;585;586;587;588;589	577		13	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	1	0	Unmodified	2751.4596	0.45956554	115	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				2		22.661	22.661	2;3	7.563199999999999E-19	16520	DP1063-4	146.63	146.63			1.2018	0.83185	NaN	1	0	Median	13668000	5721200	7946300	132	115	130	279;280	590;591;592;593;594;595	591		6	9606
AFLIEEQK	1	0	Unmodified	976.52295	0.52294707	302	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	17.763	17.763	2	0.0012517	10470	DP1063-5	130.77	75.324			NaN	NaN	NaN	0	0	Median	13764000	0	13764000	133	302	131	281	596;597	597		2	9606
AFVAIGDYNGHVGLGVK	1	0	Unmodified	1715.8995	0.89950468	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				2		19.441	19.441	2;3	0.00014139	12485	DP1063-4	159.44	159.44			2.2178	1.5351	1.6375	2	0	Median	26712000	8331800	18381000	134	172	132	282;283	598;599;600;601;602;603;604	602		7	9606
AFVDFLSDEIKEER	1	1	Unmodified	1696.8308	0.83081599	448	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	4.5	0.5				1	1	21.686	21.686	3	3.5052E-17	15427	DP1063-5	213.99	175.65			NaN	NaN	NaN	0	0	Median	9664000	0	9664000	135	448	133	284;285	605;606;607;608	608		4	9606
AFVHWYVGEGMEEGEFSEAR	0	1	Oxidation (M)	2345.0059	0.005896599	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	1	0	3.33	0.471			2	1		19.923	19.923	2;3	3.9059E-08	13534	DP1063-3	165.16	152.95			1.9272	1.6094	23.595	3	0	Median	189780000	68157000	121620000	136	413;605	134	286;287;288	609;610;611;612;613;614;615;616;617;618;619;620	609	507	12	9606
AFVHWYVGEGMEEGEFSEAR	0	1	Unmodified	2329.011	0.010981977	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			20.908	20.908	3	0.0014313	14943	DP1063-3	66.606	52.458			2.1267	1.5579	NaN	1	0	Median	24179000	8281100	15898000	137	413;605	134	289	621;622	621		2	9606
AFYGDTLVTGFAR	0	1	Unmodified	1416.7038	0.70376498	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.07	0.258			13	1		27.718	27.718	2;3	3.0106E-28	15426	DP1063-3	231.38	184.92			1.7237	1.4695	11.6	5	0	Median	843820000	319220000	524600000	138	624	135	290;291;292;293;294;295;296;297;298;299;300;301;302;303	623;624;625;626;627;628;629;630;631;632;633;634;635;636;637;638;639;640;641;642;643;644;645;646;647;648;649;650;651;652;653;654;655;656;657;658;659	625		37	9606
AFYPEEISSMVLTK	1	0	Oxidation (M)	1629.796	0.79601039	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			20.817	20.817	2	0.00072937	14634	DP1063-3	115.29	115.29			3.176	2.5503	NaN	1	0	Median	67834000	15147000	52687000	139	149	136	304	660;661;662;663	661	155	4	9606
AFYPEEISSMVLTK	1	0	Unmodified	1613.8011	0.80109577	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			22.408	22.408	2	0.0022793	16785	DP1063-3	136.5	136.5			2.5908	2.0804	NaN	1	0	Median	42598000	12023000	30575000	140	149	136	305	664;665;666;667	665		4	9606
AGAIAPCEVTVPAQNTGLGPEK	1	0	Unmodified	2179.0943	0.094317676	115	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		18.578	18.578	2	1.8276E-14	11263	DP1063-4	181.58	156.62			1.2792	0.88541	NaN	1	0	Median	14428000	5928700	8499500	141	115	137	306	668;669;670;671	668		4	9606
AGDAGIFVSR	0	1	Unmodified	991.50869	0.50869399	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1	0	1					17.435	17.435	2	0.0020391	7174	DP1063-1	116.3	62.1			NaN	NaN	NaN	0	0	Median	3729200	0	3729200	142	484	138	307	672;673	672		2	9606
AGELTEDEVER	0	1	Unmodified	1246.5677	0.56772501	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	15.652	15.652	2	0.0010617	7847	DP1063-5	114.51	86.115			1.9484	1.4552	NaN	1	0	Median	74728000	23740000	50988000	143	374	139	308	674;675	674		2	9606
AGEVINQPMMMAAR	0	1	3 Oxidation (M)	1565.7	0.70001829	183	P18206	VCL	Vinculin	yes	yes	0	3	0	2	0		1				14.712	14.712	2	0.041371	5022	DP1063-2	52.725	26.787			NaN	NaN	NaN	0	0	Median	0	0	0	144	183	140	309	676	676	232;233;234	1	9606
AGFAGDDAPR	0	1	Unmodified	975.44101	0.44100836	349;409;411	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63261;P68133;P68032;P63267;P62736	ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	4	0				1		14.923	14.923	2	0.0032034	6461	DP1063-4	99.136	75.367			2.7659	2.4177	NaN	1	0	Median	143140000	38674000	104470000	145	349;409;411	141	310	677;678;679;680	680		4	9606
AGGEAGVTLGQPHLSR	0	1	Acetyl (Protein N-term)	1590.8114	0.81141795	272	Q2VIR3;P41091	EIF2S3L;EIF2S3	Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3	yes	no	1	0	0	4	1			1		1	18.035	18.035	2	4.2040000000000005E-30	10938	DP1063-3	235.31	214.31			2.917	2.1121	NaN	1	0	Median	20780000	4966100	15814000	146	272	142	311;312	681;682;683	682		3	9606
AGGIETIANEYSDR	0	1	Unmodified	1494.6951	0.69505079	247	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	2	0		1				18.785	18.785	2	2.0301E-18	10445	DP1063-2	227.36	151.71			NaN	NaN	NaN	0	0	Median	15836000	0	15836000	147	247	143	313	684;685	684		2	9606
AGGPTTPLSPTR	0	1	Unmodified	1153.6091	0.60913632	189	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	3	0			1			15.541	15.541	2	0.0023804	7527	DP1063-3	101.97	67.788			0.84297	0.60353	NaN	1	0	Median	17952000	9590100	8362300	148	189	144	314	686	686		1	9606
AGILTTLNAR	0	1	Unmodified	1028.5978	0.59784335	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				18.586	18.586	2	0.011208	10215	DP1063-2	82.426	3.6556			1.7971	1.3054	NaN	1	0	Median	14318000	5771600	8545900	149	246	145	315	687;688	688		2	9606
AGLEVLFASAAPAITCR	0	1	Acetyl (Protein N-term)	1787.924	0.92400487	564	Q92530	PSMF1	Proteasome inhibitor PI31 subunit	yes	yes	1	0	0	4	0				1		27.529	27.529	2	0.0019984	21685	DP1063-4	130.15	72.587			NaN	NaN	NaN	0	0	Median	0	0	0	150	564	146	316	689	689		1	9606
AGLQFPVGR	0	1	Unmodified	943.52395	0.52395013	145;174;144	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;P16104;Q96QV6;Q8IUE6;Q71UI9;P0C0S5	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFX;HIST1H2AA;HIST2H2AB;H2AFV;H2AFZ	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2A.V;Histone H2A.Z	no	no	0	0	0	5	0					2	18.595	18.595	1;2	0.0012021	11466	DP1063-5	124.34	59.585			1.4703	1.0981	2.3685	2	0	Median	403220000	165390000	237830000	151	145;174;144	147	317;318	690;691;692;693	692		3	9606
AGLSQSLFER	0	1	Unmodified	1106.572	0.57202253	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		2				18.98	18.98	2	0.030992	10709	DP1063-2	92.051	39.115			NaN	NaN	NaN	0	0	Median	0	0	0	152	569	148	319;320	694;695	694		2	9606
AGQSAAGAAPGGGVDTR	0	1	Unmodified	1441.691	0.69096847	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0.816	1	1	1			13.91	13.91	2	0.0020542	3328	DP1063-1	132.51	132.51			10.269	8.2967	NaN	1	0	Median	5817500	475990	5341500	153	190	149	321;322;323	696;697;698;699;700	697		5	9606
AGQSVIGLQMGTNK	1	0	Oxidation (M)	1418.7188	0.71876312	510	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	4	0				1		16.166	16.166	2	0.023071	8168	DP1063-4	84.821	36.381			NaN	NaN	NaN	0	0	Median	3428300	0	3428300	154	510	150	324	701	701	645	1	9606
AGTGVDNVDLEAATR	0	1	Unmodified	1487.7216	0.72159989	57	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			17.606	17.606	2	0.0012022	10336	DP1063-3	152.47	119.09			2.1758	1.6274	NaN	1	0	Median	31661000	11240000	20421000	155	57	151	325	702;703;704;705	702		4	9606
AGTHILCIK	1	0	Unmodified	1011.5535	0.55353569	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				15.606	15.606	2	0.0025995	6256	DP1063-2	116.73	87.387			1.5153	1.2678	NaN	1	0	Median	135990000	54475000	81510000	156	154	152	326	706;707;708;709	708		4	9606
AGTLQVGDR	0	1	Unmodified	915.47739	0.47739386	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1	0	1					14.571	14.571	2	0.010028	4095	DP1063-1	98.629	45.278			NaN	NaN	NaN	0	0	Median	3461500	0	3461500	157	484	153	327	710	710		1	9606
AGVLAHLEEER	0	1	Unmodified	1222.6306	0.63060004	252	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	yes	no	0	0	0	1	0	1					17.14	17.14	2	0.00087554	6858	DP1063-1	117.31	84.471			3.2321	2.6842	NaN	1	0	Median	3157400	570020	2587400	158	252	154	328	711;712;713	711		3	9606
AGVNTVTTLVENK	1	0	Unmodified	1344.7249	0.72489436	382	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		18.131	18.131	2	3.5471E-05	10650	DP1063-4	164.33	111.12			1.6418	1.1364	NaN	1	0	Median	13819000	4614600	9204300	159	382	155	329	714;715	715		2	9606
AGVNTVTTLVENKK	2	0	Unmodified	1472.8199	0.81985737	382	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		16.723	16.723	3	0.035162	8771	DP1063-4	41.743	15.094			2.1528	2.2357	NaN	1	0	Median	11072000	3739100	7332800	160	382	156	330	716	716		1	9606
AGVSFSGHR	0	1	Acetyl (Protein N-term)	958.46208	0.46207815	519	Q16643	DBN1	Drebrin	yes	yes	1	0	0	2	0		1				16.228	16.228	2	0.0018209	7046	DP1063-2	107.29	73.779			NaN	NaN	NaN	0	0	Median	15778000	0	15778000	161	519	157	331	717	717		1	9606
AHEILPNLVCCSAK	1	0	Unmodified	1610.7909	0.79088221	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			17.982	17.982	2	0.028053	10868	DP1063-3	76.533	52.784			NaN	NaN	NaN	0	0	Median	0	0	0	162	319	158	332	718	718		1	9606
AHGGYSVFAGVGER	0	1	Unmodified	1405.6739	0.67386184	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			17.296	17.296	3	0.020734	9958	DP1063-3	70.68	43.007			NaN	NaN	NaN	0	0	Median	16393000	0	16393000	163	121	159	333	719	719		1	9606
AHIAQLCEK	1	0	Unmodified	1068.5386	0.53861391	428	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1.5	0.5	1	1				13.827	13.827	2	3.6928E-08	3250	DP1063-1	158.07	138.37			1.4733	1.1783	NaN	1	0	Median	6989400	1571500	5418000	164	428	160	334;335	720;721;722;723	720		4	9606
AHLMEIQVNGGTVAEK	1	0	Oxidation (M)	1711.8563	0.85631924	266	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	4	0				1		15.986	15.986	3	0.00089718	7931	DP1063-4	72.315	34.722			1.4479	1.0022	NaN	1	0	Median	7195400	2491400	4704000	165	266	161	336	724;725	725	320	2	9606
AHQLVMEGYNWCHDR	0	1	Oxidation (M)	1930.8203	0.82028486	384	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	yes	no	0	1	0	4	0				1		16.152	16.152	3	0.0059484	8166	DP1063-4	84.195	60.633			NaN	NaN	NaN	0	0	Median	3994300	0	3994300	166	384	162	337	726;727	727	475	2	9606
AHQVVEDGYEFFAK	1	0	Unmodified	1638.7678	0.7678218	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.77	0.89			7	2	4	21.308	21.308	2;3	8.0422E-07	11307	DP1063-4	182.71	149.66			NaN	NaN	NaN	0	0	Median	450830000	0	450830000	167	260;365;366	163	338;339;340;341;342;343;344;345;346;347;348;349;350	728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745	738		18	9606
AHQVVEDGYEFFAKR	1	1	Unmodified	1794.8689	0.86893283	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	4	0.707			1	2	1	18.181	18.181	3;4	9.5334E-05	10767	DP1063-4	164.65	132.94			NaN	NaN	NaN	0	0	Median	52937000	0	52937000	168	260;365;366	164	351;352;353;354	746;747;748;749;750;751	749		6	9606
AHSSMVGVNLPQK	1	0	Oxidation (M)	1382.6976	0.69763375	95	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	1	0	4	0				1		14.723	14.723	2	0.016773	6239	DP1063-4	86.898	46.309			NaN	NaN	NaN	0	0	Median	2100500	0	2100500	169	95	165	355	752	752	67	1	9606
AHYTHSDYQYSQR	0	1	Unmodified	1654.7124	0.71243219	603	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	2	0		1				13.329	13.329	3	0.031395	3277	DP1063-2	63.966	42.717			NaN	NaN	NaN	0	0	Median	2266900	0	2266900	170	603	166	356	753	753		1	9606
AIADTGANVVVTGGK	1	0	Unmodified	1371.7358	0.73579339	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3.5	0.5			1	1		16.713	16.713	2	0.0022574	8762	DP1063-4	111.52	54.714			4.3453	3.4892	NaN	1	0	Median	65557000	9505700	56052000	171	319	167	357;358	754;755;756;757;758;759;760	760		7	9606
AIAELGIYPAVDPLDSTSR	0	1	Unmodified	1987.0262	0.026221336	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			22.441	22.441	2	1.8499E-33	16848	DP1063-3	227.56	227.56			1.5645	1.1651	NaN	1	0	Median	29915000	11130000	18785000	172	121	168	359	761;762;763;764	761		4	9606
AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFK	1	0	Unmodified	3950.0618	0.061825566	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			23.455	23.455	3;4	3.6347E-05	18189	DP1063-3	53.987	53.987			0.922	0.7557	11.54	2	0	Median	27389000	13284000	14105000	173	154	169	360;361	765;766;767;768;769;770;771	770		7	9606
AIANECQANFISIK	1	0	Unmodified	1577.7872	0.78717704	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				18.992	18.992	2	0.00037645	10705	DP1063-2	143.79	89.723			NaN	NaN	NaN	0	0	Median	11970000	0	11970000	174	337	170	362	772;773;774	772		3	9606
AIEALHGHELRPGR	0	2	Unmodified	1554.8379	0.83790748	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	3	0			1			14.409	14.409	3	0.0027011	6044	DP1063-3	88.021	44.638			1.027	0.93898	NaN	1	0	Median	21612000	10435000	11177000	175	591	171	363	775;776	776		2	9606
AIEALKEFNEDGALAVLQQFK	2	0	Unmodified	2333.2267	0.22671206	64	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	1	3	0			1			23.522	23.522	3	0.039154	18284	DP1063-3	65.287	35.149			NaN	NaN	NaN	0	0	Median	2565900	0	2565900	176	64	172	364	777;778	778		2	9606
AIENIDTLTNLESLFLGK	1	0	Unmodified	1990.0623	0.062272491	512	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		26.067	26.067	2	5.5065E-07	20317	DP1063-4	181.76	127.73			NaN	NaN	NaN	0	0	Median	3907100	0	3907100	177	512	173	365	779;780	779		2	9606
AIEPPPLDAVIEAEHTLR	0	1	Unmodified	1970.0473	0.047291129	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				21.945	21.945	3	8.1676E-05	14705	DP1063-2	124.46	124.46			1.4369	1.0449	NaN	1	0	Median	13422000	4374400	9047900	178	452	174	366	781;782	781		2	9606
AIETTDIISR	0	1	Unmodified	1117.5979	0.59790293	583	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	4.5	0.5				1	1	17.361	17.361	2	0.01469	9677	DP1063-4	91.265	23.772			NaN	NaN	NaN	0	0	Median	8495100	0	8495100	179	583	175	367;368	783;784;785	784		3	9606
AIFLADGNVFTTGFSR	0	1	Unmodified	1714.8679	0.8678702	652	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	3	0			1			22.949	22.949	2	0.0070225	17537	DP1063-3	98.531	46.253			NaN	NaN	NaN	0	0	Median	4060700	0	4060700	180	652	176	369	786;787;788	786		3	9606
AIGIGAYLVR	0	1	Unmodified	1031.6128	0.61276513	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	2	0.816	1	1	1			20.516	20.516	2	1.4017E-07	10971	DP1063-1	170.73	115.28			1.347	1.3808	12.798	3	0	Plateau	919350000	390830000	528520000	181	43;460	177	370;371;372	789;790;791;792;793;794;795;796;797;798;799;800;801;802;803;804;805;806;807;808;809;810	792		22	9606
AIGPHDVLATLLNNLK	1	0	Unmodified	1687.9621	0.96210494	73	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				24.257	24.257	3	0.0037863	17608	DP1063-2	93.243	60.235			NaN	NaN	NaN	0	0	Median	0	0	0	182	73	178	373;374	811;812	812		2	9606
AIGVLTSGGDAQGMNAAVR	0	1	Oxidation (M)	1802.8945	0.89449566	433	Q01813;P17858	PFKP;PFKL	ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type	yes	no	0	1	0	2	0		1				17.306	17.306	2	0.00010253	8417	DP1063-2	141.73	109.66			1.7164	1.2399	NaN	1	0	Median	20982000	6631700	14350000	183	433	179	375	813;814;815;816	814	544	4	9606
AIIIFVPVPQLK	1	0	Unmodified	1336.8482	0.84824438	364	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	23.4	23.4	2	0.012282	17428	DP1063-5	83.005	83.005			1.7518	1.4829	NaN	1	0	Median	6350600	2317100	4033500	184	364	180	376	817;818	818		2	9606
AILVDLEPGTMDSVR	0	1	Oxidation (M)	1630.8236	0.82362212	129;480;471	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	4	0.816			1	1	1	20.013	20.013	2	0.0014165	13219	DP1063-4	122.18	78.22			1.9823	1.6975	31.928	3	0	Plateau	232420000	74670000	157750000	185	129;480;471	181	377;378;379	819;820;821;822;823;824;825;826	823	122	8	9606
AILVDLEPGTMDSVR	0	1	Unmodified	1614.8287	0.8287075	129;480;471	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3	0			1			21.166	21.166	2	1.0726E-13	15227	DP1063-3	199.03	156.69			2.0968	1.6644	NaN	1	0	Median	68554000	20497000	48058000	186	129;480;471	181	380	827;828;829;830	829		4	9606
AIMTFTCHNEINAFVVLSR	0	1	Oxidation (M)	2238.0925	0.092543537	525	Q4L235	AASDH	Acyl-CoA synthetase family member 4	yes	yes	0	1	0	4	0				1		21.967	21.967	3	0.045527	15698	DP1063-4	60.093	18.67			NaN	NaN	NaN	0	0	Median	12005000	12005000	0	187	525	182	381	831	831	665	1	9606
AINCATSGVVGLVNCLR	0	1	Unmodified	1802.9131	0.91312261	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				21.524	21.524	2	0.00049988	14124	DP1063-2	127.02	71.76			2.1637	1.6973	NaN	1	0	Median	15938000	3712200	12226000	188	303	183	382;383	832;833;834;835	834		4	9606
AINQGGLTSVAVR	0	1	Unmodified	1284.715	0.71499837	352	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	5	0					1	17.163	17.163	2	0.00084698	9653	DP1063-5	123.8	61.601			NaN	NaN	NaN	0	0	Median	12558000	0	12558000	189	352	184	384	836;837	836		2	9606
AINQIAAALFTIHK	1	0	Unmodified	1509.8667	0.86674799	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				21.753	21.753	3	0.00026251	14468	DP1063-2	124.48	124.48			1.3377	1.1191	NaN	1	0	Median	27177000	11769000	15408000	190	666	185	385	838;839;840;841	840		4	9606
AINQQTGAFVEISR	0	1	Unmodified	1532.7947	0.79470526	570	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2	0		1				18.401	18.401	2	0.00044208	9963	DP1063-2	128.28	76.755			NaN	NaN	NaN	0	0	Median	13208000	0	13208000	191	570	186	386	842	842		1	9606
AIPQLQGYLR	0	1	Unmodified	1157.6557	0.65569258	439	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		19.823	19.823	2	0.0062138	12974	DP1063-4	92.47	60.71			1.7328	1.184	NaN	1	0	Median	20803000	7582200	13221000	192	439	187	387	843;844;845;846	844		4	9606
AIQAAFFYLEPR	0	1	Unmodified	1424.7452	0.74523587	27	CON__Q3SZR3			yes	yes	0	0	0	4	0				1		22.406	22.406	2	5.1199E-06	16163	DP1063-4	160.77	108.84		+	NaN	NaN	NaN	0	0	Median	12306000	12306000	0	193	27	188	388	847;848	848		2	
AIQGGTSHHLGQNFSK	1	0	Unmodified	1680.8332	0.83321603	131	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1.5	0.5	1	1				13.935	13.935	3	0.0049838	3397	DP1063-1	61.649	61.649			1.7771	1.3854	NaN	1	0	Median	12255000	1941800	10313000	194	131	189	389;390	849;850;851	850		3	9606
AITGASLADIMAK	1	0	Unmodified	1260.6748	0.67477304	421	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	20.532	20.532	2	0.0022375	14017	DP1063-5	99.522	99.522			2.1864	1.8508	NaN	1	0	Median	9157700	2717600	6440200	195	421	190	391	852;853;854;855	852		4	9606
AITGASLADIMAK	1	0	Oxidation (M)	1276.6697	0.66968766	421	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	0	5	0					1	18.287	18.287	2	0.0039109	11120	DP1063-5	103.31	70.419			NaN	NaN	NaN	0	0	Median	40566000	0	40566000	196	421	190	392	856;857	856	535	2	9606
AITGIQAFTASK	1	0	Unmodified	1206.6608	0.66083754	571	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		18.785	18.785	2	0.0030897	11603	DP1063-4	98.04	98.04			1.1413	0.78995	NaN	1	0	Median	8751600	4129000	4622600	197	571	191	393	858;859	859		2	9606
AITIAGIPQSIIECVK	1	0	Unmodified	1711.9542	0.95424237	508	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		22.798	22.798	2	0.0016065	16651	DP1063-4	132.5	132.5			2.4393	1.6884	NaN	1	0	Median	4928700	1331900	3596800	198	508	192	394	860;861	860		2	9606
AITSGGITYQDQPWHADCFVCVTCSK	1	0	Unmodified	3000.3204	0.32044758	476	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		20.335	20.335	3	0.0042337	13670	DP1063-4	68.569	48.513			NaN	NaN	NaN	0	0	Median	3214600	0	3214600	199	476	193	395	862	862		1	9606
AIVAGDQNVEYK	1	0	Unmodified	1305.6565	0.65648044	476	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		16.055	16.055	2	0.00011207	8009	DP1063-4	157.96	105.23			1.1695	0.80952	NaN	1	0	Median	15318000	6592300	8725600	200	476	194	396	863;864;865;866	865		4	9606
AIVAIENPADVSVISSR	0	1	Unmodified	1739.9418	0.94176342	0	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4.5	0.5				1	1	20.402	20.402	2	2.6792000000000002E-30	13686	DP1063-4	225.23	225.23			2.1938	1.5707	NaN	1	0	Median	29984000	9423200	20561000	201	0	195	397;398	867;868;869;870;871	868		5	9606
AIVNPMDMQTSGALLRTCVK	1	1	2 Oxidation (M)	2236.1014	0.10139366	226	P28336	NMBR	Neuromedin-B receptor	yes	yes	0	2	1	4.5	0.5				1	1	28.802	28.802	3	0.02344	22463	DP1063-4	68.243	43.964			NaN	NaN	NaN	0	0	Median	0	0	0	202	226	196	399;400	872;873	872	276;277	2	9606
AIVQQWLEYR	0	1	Unmodified	1304.6877	0.68772099	59	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	5	0					1	20.981	20.981	2	0.0037563	14599	DP1063-5	105.4	12.957			NaN	NaN	NaN	0	0	Median	3615300	0	3615300	203	59	197	401	874;875;876	874		3	9606
AIYQATYR	0	1	Unmodified	984.50288	0.50288033	225	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	5	0					1	15.732	15.732	2	0.052423	8017	DP1063-5	73.616	52.088			1.4901	1.1129	NaN	1	0	Median	11786000	4131600	7654100	204	225	198	402	877	877		1	9606
ALAAAGYDVEK	1	0	Unmodified	1106.5608	0.56078914	175	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	0	3.67	0.471			1	2		16.315	16.315	1;2	2.1259E-05	8392	DP1063-4	157.96	100.37			1.4969	1.0361	NaN	1	0	Median	86994000	32598000	54396000	205	175	199	403;404;405	878;879;880;881;882;883	883		6	9606
ALAAAGYDVEKNNSR	1	1	Unmodified	1577.7798	0.77978347	175	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	1	4	0				2		15.139	15.139	2;3	1.5717E-05	6759	DP1063-4	152.96	96.733			1.1298	1.0985	1.1924	2	0	Median	24333000	11306000	13027000	206	175	200	406;407	884;885;886;887;888;889;890;891	885		8	9606
ALAAPAAEEKEEAR	1	1	Unmodified	1454.7365	0.73652168	432	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	1	2	1.41	2			1		14.16	14.16	2;3	0.0005495	3660	DP1063-1	113.07	88.717			1.1594	1.0615	12.94	3	0	Plateau	23384000	10137000	13247000	207	432	201	408;409;410	892;893;894;895;896;897;898;899;900	893		9	9606
ALAAPAAEEKEEAREK	2	1	Unmodified	1711.8741	0.87407779	432	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	2	4	0				1		13.653	13.653	3	0.027476	4906	DP1063-4	71.692	35.67			NaN	NaN	NaN	0	0	Median	0	0	0	208	432	202	411	901	901		1	9606
ALAAVPSAGSVQR	0	1	Unmodified	1225.6779	0.67788459	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1.5	0.5	1	1				16.384	16.384	2	0.0032545	6060	DP1063-1	100.82	52.218			NaN	NaN	NaN	0	0	Median	12092000	0	12092000	209	484	203	412;413	902;903;904	902		3	9606
ALANSLACQGK	1	0	Unmodified	1131.5706	0.57064232	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		15.3	15.3	2	1.1312E-07	6931	DP1063-4	181.55	112.76			NaN	NaN	NaN	0	0	Median	24099000	0	24099000	210	98	204	414	905;906;907	905		3	9606
ALAVSDLNR	0	1	Unmodified	957.52434	0.52434406	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.642	16.642	2	1.7767E-13	7516	DP1063-2	192.31	74.911			1.4949	1.4123	10.042	3	0	Plateau	1104400000	453200000	651160000	211	154	205	415;416;417	908;909;910;911;912;913;914;915;916;917;918;919;920;921	912		14	9606
ALEESNYELEGK	1	0	Unmodified	1380.6409	0.64088996	19	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.58	1	1		1	1	16.841	16.841	2	3.4113E-08	7794	DP1063-2	190.86	116.33		+	NaN	NaN	NaN	0	0	Median	162730000	162730000	0	212	19	206	418;419;420;421	922;923;924;925;926;927;928;929	924		8	9606
ALELDSNLYR	0	1	Unmodified	1192.6088	0.60880197	252	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					19.182	19.182	2	0.0013295	9314	DP1063-1	122.28	50.902			NaN	NaN	NaN	0	0	Median	4936300	0	4936300	213	252	207	422	930;931	931		2	9606
ALESPERPFLAILGGAK	1	1	Unmodified	1767.9883	0.98831969	95	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	4	0				2		21.55	21.55	2;3	0.0039992	15219	DP1063-4	98.694	58.669			NaN	NaN	NaN	0	0	Median	2979300	0	2979300	214	95	208	423;424	932;933;934	932		3	9606
ALESSIAPIVIFASNR	0	1	Unmodified	1686.9305	0.93047046	662	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			2			22.949	22.949	2;3	0.0038847	17553	DP1063-3	91.657	54.408			3.6486	2.6588	NaN	1	0	Median	18392000	3084200	15308000	215	662	209	425;426	935;936;937	936		3	9606
ALGGEDVR	0	1	Unmodified	815.41373	0.41373097	18	CON__P12763			yes	yes	0	0	0	3.5	0.5			1	1		14.046	14.046	2	0.010878	5346	DP1063-4	101.64	32.211		+	NaN	NaN	NaN	0	0	Median	155340000	155340000	0	216	18	210	427;428	938;939;940;941	941		4	9606
ALGLNENDYK	1	0	Unmodified	1135.551	0.55095274	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				17.103	17.103	2	0.0024557	8141	DP1063-2	113.66	69.309			NaN	NaN	NaN	0	0	Median	23015000	0	23015000	217	654	211	429	942;943	943		2	9606
ALHDQSQELQDAAGHR	0	1	Unmodified	1774.8347	0.83467259	81	O94927	HAUS5	HAUS augmin-like complex subunit 5	yes	yes	0	0	0	3	0			1			14.765	14.765	3	0.0011245	6517	DP1063-3	106.82	75.431			NaN	NaN	NaN	0	0	Median	3768100	0	3768100	218	81	212	430	944	944		1	9606
ALIAAQYSGAQVR	0	1	Unmodified	1346.7306	0.73064844	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		17.49	17.49	2	8.307E-09	9793	DP1063-4	190.02	109.58			2.2026	1.708	NaN	1	0	Median	56011000	14505000	41507000	219	218	213	431	945;946;947;948	945		4	9606
ALIAGGGAPEIELALR	0	1	Unmodified	1549.8828	0.88279198	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3.5	0.5			1	1		21.675	21.675	2	0.00035884	15901	DP1063-3	158.56	136.33			4.0762	3.1926	NaN	1	0	Median	62200000	10645000	51555000	220	320	214	432;433	949;950;951;952;953;954	951		6	9606
ALIESYQNLTR	0	1	Unmodified	1306.6881	0.68811492	551	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	3	0			1			18.786	18.786	2	0.00018027	11997	DP1063-3	127.76	34.116			1.2585	0.92566	NaN	1	0	Median	25480000	10448000	15032000	221	551	215	434	955;956;957;958	955		4	9606
ALIVVQQGMTPSAK	1	0	Oxidation (M)	1457.7912	0.79119978	188	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	1	0	5	0					1	16.931	16.931	2	0.0014352	9334	DP1063-5	121.61	80.884			NaN	NaN	NaN	0	0	Median	4584600	0	4584600	222	188	216	435	959	959	237	1	9606
ALLANALTSALR	0	1	Unmodified	1212.719	0.71902112	342	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	5	0					1	21.452	21.452	2	0.00070447	15154	DP1063-5	122.51	94.739			1.6721	1.2488	NaN	1	0	Median	15776000	6376300	9400200	223	342	217	436	960;961	961		2	9606
ALLELQLEPEELYQTFQR	0	1	Unmodified	2219.1474	0.1473991	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				24.568	24.568	2	0.052206	17988	DP1063-2	72.265	35.327			NaN	NaN	NaN	0	0	Median	0	0	0	224	165	218	437	962	962		1	9606
ALLFIPR	0	1	Unmodified	828.52216	0.52215921	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				20.537	20.537	2	0.00017061	12824	DP1063-2	145	18.933			2.1868	1.8301	NaN	1	0	Median	131820000	39395000	92423000	225	135	219	438	963;964	963		2	9606
ALLFVPR	0	1	Unmodified	814.50651	0.50650915	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				19.795	19.795	2	0.016993	11843	DP1063-2	120.76	0			2.686	2.1978	NaN	1	0	Median	99495000	27120000	72375000	226	132	220	439	965;966	966		2	9606
ALLLLLVGGVDQSPR	0	1	Unmodified	1549.9192	0.91917749	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				23.947	23.947	2	0.016502	17316	DP1063-2	66.289	52.888			1.5703	1.2482	NaN	1	0	Median	3859800	1731700	2128100	227	246	221	440	967	967		1	9606
ALLQSSASR	0	1	Unmodified	931.50869	0.50869399	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	4	0				1		14.564	14.564	2	0.0035938	6030	DP1063-4	112.41	55.13			2.8827	1.8795	NaN	1	0	Median	14403000	4234200	10168000	228	659	222	441	968;969;970;971	970		4	9606
ALLVTASQCQQPAENK	1	0	Unmodified	1756.8778	0.87778296	431	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	3	0			1			16.473	16.473	2	0.0033753	8828	DP1063-3	122.33	65.543			NaN	NaN	NaN	0	0	Median	0	0	0	229	431	223	442	972	972		1	9606
ALMLQGVDLLADAVAVTMGPK	1	0	2 Oxidation (M)	2144.1221	0.12211233	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	2	0	3	0			2			24.817	24.817	2;3	5.3813E-10	19769	DP1063-3	176.29	176.29			2.0012	1.607	18.936	2	0	Median	24317000	6584800	17732000	230	151	224	443;444	973;974;975;976;977;978;979	973	161;162	7	9606
ALMLQGVDLLADAVAVTMGPK	1	0	Oxidation (M)	2128.1272	0.12719771	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	0	3	0			1			25.762	25.762	3	2.1632E-06	20896	DP1063-3	103.27	103.27			2.1313	1.7114	NaN	1	0	Median	7032500	2103700	4928900	231	151	224	445	980	980	161;162	1	9606
ALNLAYSSIYGSYR	0	1	Unmodified	1576.7886	0.78855725	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				20.636	20.636	2	0.0038496	12997	DP1063-2	95.477	48.522			1.985	1.4344	NaN	1	0	Median	21067000	7140200	13927000	232	543	225	446	981;982	981		2	9606
ALPAVQQNNLDEDLIR	0	1	Unmodified	1807.9428	0.94282606	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		2				20.02	20.02	2	1.6176E-05	12131	DP1063-2	170.04	119.09			1.8829	1.361	NaN	1	0	Median	18698000	5759300	12939000	233	195	226	447;448	983;984;985;986;987	983		5	9606
ALPFWNEEIVPQIK	1	0	Unmodified	1682.9032	0.90319307	185	P18669;Q8N0Y7;P15259	PGAM1;PGAM4;PGAM2	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4;Phosphoglycerate mutase 2	yes	no	0	0	0	5	0					1	23.248	23.248	2	0.0029811	17211	DP1063-5	97.813	71.027			2.2299	1.8876	NaN	1	0	Median	10737000	2906600	7830700	234	185	227	449	988;989	989		2	9606
ALPGQLKPFETLLSQNQGGK	2	0	Unmodified	2125.1532	0.15315318	140	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	0	1	5	0					1	21.011	21.011	3	7.0752E-05	14617	DP1063-5	95.666	95.666			2.169	2.1194	NaN	1	0	Median	18084000	5888700	12196000	235	140	228	450	990	990		1	9606
ALPNNTSSSPQPK	1	0	Unmodified	1339.6732	0.67319314	103	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			13.745	13.745	2	0.020076	5175	DP1063-3	75.387	75.387			1.9277	1.5479	NaN	1	0	Median	4302800	1270200	3032600	236	103	229	451	991;992;993	991		3	9606
ALQAQAQELEELNR	0	1	Unmodified	1611.8216	0.82164829	438	Q02833	RASSF7	Ras association domain-containing protein 7	yes	yes	0	0	0	4	0				1		18.777	18.777	2	0.0039803	11626	DP1063-4	100.55	38.251			NaN	NaN	NaN	0	0	Median	3219200	0	3219200	237	438	230	452	994;995	994		2	9606
ALQASALK	1	0	Unmodified	800.4756	0.47560295	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		14.664	14.664	2	0.034537	6098	DP1063-4	86.833	11.095			NaN	NaN	NaN	0	0	Median	18873000	0	18873000	238	98	231	453	996	996		1	9606
ALQFLEEVK	1	0	Unmodified	1075.5914	0.59136099	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			20.159	20.159	2	0.010606	13909	DP1063-3	93.374	93.374			4.2403	3.405	NaN	1	0	Median	25629000	5108000	20521000	239	268	232	454	997;998	997		2	9606
ALQLEEER	0	1	Unmodified	986.50327	0.50327426	170	P15311	EZR	Ezrin	yes	yes	0	0	0	2	0		1				16.012	16.012	2	0.039688	6737	DP1063-2	84.743	0.49944			NaN	NaN	NaN	0	0	Median	10380000	0	10380000	240	170	233	455	999	999		1	9606
ALSPLEEWLR	0	1	Unmodified	1212.6503	0.65027285	217	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	2	0		1				22.893	22.893	2	0.010388	15916	DP1063-2	95.502	41.751			NaN	NaN	NaN	0	0	Median	2151000	0	2151000	241	217	234	456	1000;1001	1000		2	9606
ALTHIDHSLSR	0	1	Unmodified	1248.6575	0.65748349	341	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				14.241	14.241	3	0.0030347	4437	DP1063-2	91.469	57.263			NaN	NaN	NaN	0	0	Median	7600100	0	7600100	242	341	235	457	1002;1003	1003		2	9606
ALTLGALTLPLAR	0	1	Unmodified	1308.8129	0.8129215	607	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	2	0		1				23.189	23.189	2	0.00091205	16221	DP1063-2	123.79	96.463			3.1079	2.3913	NaN	1	0	Median	5638800	1419200	4219600	243	607	236	458	1004;1005	1004		2	9606
ALTLIAGSPLK	1	0	Unmodified	1082.6699	0.66994566	548	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				19.772	19.772	2	0.021119	11852	DP1063-2	70.552	39.248			1.476	1.2349	NaN	1	0	Median	9175800	4121200	5054600	244	548	237	459	1006;1007	1006		2	9606
ALTQTGGPHVK	1	0	Unmodified	1107.6037	0.60365701	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					13.173	13.173	2	1.0988E-05	2527	DP1063-1	143.03	143.03			11.125	8.9459	NaN	1	0	Median	3650100	318480	3331600	245	190	238	460	1008;1009	1009		2	9606
ALTSEIALLQSR	0	1	Unmodified	1300.7351	0.73506511	105	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	3	0			1			20.41	20.41	2	0.0014743	14238	DP1063-3	121.9	62.918			NaN	NaN	NaN	0	0	Median	11990000	0	11990000	246	105	239	461	1010;1011;1012	1011		3	9606
ALTVPELTQQMFDAK	1	0	Oxidation (M)	1706.8549	0.85492225	414;471	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		20.173	20.173	2	0.0012552	13817	DP1063-3	108.68	17.988			1.2925	0.96363	47.708	2	0	Median	133530000	54868000	78659000	247	414;471	240	462;463	1013;1014	1013	512	2	9606
ALTVPELTQQMFDAK	1	0	Unmodified	1690.86	0.86000763	414;471	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	4	0				1		22.568	22.568	2	0.0038521	16448	DP1063-4	102.05	69.55			NaN	NaN	NaN	0	0	Median	5185300	0	5185300	248	414;471	240	464	1015	1015		1	9606
ALTVPELTQQMFDSK	1	0	Unmodified	1706.8549	0.85492225	480	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	4	0				1		20.178	20.178	2	0.0031978	13369	DP1063-4	93.011	2.218			1.9508	1.3503	NaN	1	0	Median	16536000	5253800	11282000	249	480	241	465	1016	1016		1	9606
ALTVPELTQQVFDAK	1	0	Unmodified	1658.8879	0.88793694	129	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			2			22.327	22.327	2;3	6.4097E-06	16726	DP1063-3	163.33	117.05			2.1965	1.7638	10.329	2	0	Median	153270000	46923000	106340000	250	129	242	466;467	1017;1018;1019;1020;1021;1022	1018		6	9606
ALVAYYQK	1	0	Unmodified	954.51747	0.51746776	370	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	16.578	16.578	2	0.0064767	8955	DP1063-5	119.22	32.287			1.9307	1.6343	NaN	1	0	Median	33751000	10085000	23666000	251	370	243	468	1023;1024;1025	1025		3	9606
ALVDGPCTQVR	0	1	Unmodified	1214.6078	0.60775611	318	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	16.277	16.277	2	0.00014062	8634	DP1063-5	128.36	92.743			1.5272	1.1406	NaN	1	0	Median	35936000	13543000	22393000	252	318	244	469	1026;1027;1028;1029	1029		4	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	0	1	Unmodified	3135.3979	0.39788908	448	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		21.995	21.995	3	7.6807E-08	15785	DP1063-4	131.94	116.47			NaN	NaN	NaN	0	0	Median	4973100	0	4973100	253	448	245	470	1030;1031;1032;1033;1034	1032		5	9606
ALVNQLHER	0	1	Unmodified	1078.5883	0.5883413	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	14.704	14.704	2;3	2.2282E-10	6368	DP1063-3	167.24	133.15			1.5721	1.547	17.963	4	0	Linear	509800000	199570000	310230000	254	624	246	471;472;473;474	1035;1036;1037;1038;1039;1040;1041;1042;1043;1044;1045;1046;1047;1048	1035		14	9606
ALYDTFSAFGNILSCK	1	0	Unmodified	1805.8658	0.86582129	156	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			24.227	24.227	2	0.00089785	19117	DP1063-3	119.69	68.403			NaN	NaN	NaN	0	0	Median	5839800	0	5839800	255	156	247	475	1049;1050	1049		2	9606
ALYETELADAR	0	1	Unmodified	1250.6143	0.61428128	189	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	3	0			1			18.116	18.116	2	0.015778	11055	DP1063-3	88.681	36.402			NaN	NaN	NaN	0	0	Median	0	0	0	256	189	248	476	1051	1051		1	9606
AMGEQAVALAR	0	1	Oxidation (M)	1131.5706	0.57064232	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			15.376	15.376	2	8.6423E-06	5887	DP1063-2	138.54	98.442			1.5766	1.3408	3.7028	2	0	Median	452960000	173660000	279300000	257	110	249	477;478	1052;1053;1054;1055;1056;1057;1058	1055	83	7	9606
AMGEQAVALAR	0	1	Unmodified	1115.5757	0.5757277	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			16.818	16.818	2	7.3743E-06	9245	DP1063-3	147.19	95.398			1.3101	1.0987	NaN	1	0	Median	139970000	60506000	79461000	258	110	249	479;480	1059;1060;1061;1062;1063	1062		5	9606
AMGIMNSFVNDIFER	0	1	2 Oxidation (M)	1774.8018	0.80184082	66;126	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	2	0	4.86	0.682	1			1	33	27.168	27.168	2;3	1.7198999999999998E-40	15835	DP1063-5	250.51	226.22			1.5094	1.1273	11.895	4	0	Median	522060000	195240000	326820000	259	66;126	250	481;482;483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515	1064;1065;1066;1067;1068;1069;1070;1071;1072;1073;1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088;1089;1090;1091;1092;1093;1094;1095;1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107;1108;1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120	1069	55;56	57	9606
AMGIMNSFVNDIFER	0	1	Oxidation (M)	1758.8069	0.8069262	66;126	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	1	0	5	0					1	22.846	22.846	2	1.467E-39	16780	DP1063-5	240.8	198.46			1.675	1.251	NaN	1	0	Median	20357000	6791800	13565000	260	66;126	250	516	1121;1122;1123;1124;1125	1123	55;56	5	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Oxidation (M)	2533.118	0.11796624	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0.816		2	2	2		19.88	19.88	2;3	2.1697E-80	13497	DP1063-3	287.54	271.3			1.422	1.1692	10.373	5	0	Median	581180000	234600000	346590000	261	595	251	517;518;519;520;521;522	1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145;1146;1147	1138	710	22	9606
AMTDTFTLQAHDQFSPFSSSSGR	0	1	Unmodified	2517.1231	0.12305162	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			20.684	20.684	3	1.186E-11	13107	DP1063-2	173.03	173.03			1.2642	0.9619	0.03431	2	0	Median	82057000	34665000	47392000	262	595	251	523;524	1148;1149;1150;1151;1152;1153	1148		6	9606
AMTGVEQWPYR	0	1	Oxidation (M)	1352.6183	0.6183208	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			18.096	18.096	2	4.6617E-06	11041	DP1063-3	159.28	126.28			NaN	NaN	NaN	0	0	Median	16542000	0	16542000	263	304	252	525	1154;1155	1155	366	2	9606
ANELPQPPVPEPANAGK	1	0	Unmodified	1727.8842	0.88424855	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.997	17.997	2	0.00094996	9301	DP1063-2	126.34	104.67			0.58643	0.49062	NaN	1	0	Median	16222000	9776400	6446100	264	418	253	526	1156;1157;1158;1159;1160	1158		5	9606
ANPALYVLR	0	1	Unmodified	1015.5815	0.581465	536	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					19.128	19.128	2	0.041468	9239	DP1063-1	82.241	31.275			NaN	NaN	NaN	0	0	Median	2724600	0	2724600	265	536	254	527	1161	1161		1	9606
ANSNLVLQADR	0	1	Unmodified	1199.6258	0.62584901	76	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					16.509	16.509	2	0.0055856	6151	DP1063-1	98.898	30.528			NaN	NaN	NaN	0	0	Median	9675700	0	9675700	266	76	255	528	1162;1163	1162		2	9606
ANTFVAELK	1	0	Unmodified	991.53385	0.53384611	270	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		17.923	17.923	2	0.024013	10392	DP1063-4	77.732	30.158			2.1805	1.5093	NaN	1	0	Median	7353000	2656000	4697000	267	270	256	529	1164	1164		1	9606
APAMQPAEIQFAQR	0	1	Oxidation (M)	1572.7719	0.77186132	490	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2	0		1				17.358	17.358	2	0.00071408	8523	DP1063-2	147.74	108.87			NaN	NaN	NaN	0	0	Median	5816600	0	5816600	268	490	257	530	1165;1166	1166	623	2	9606
APDFVFYAPR	0	1	Unmodified	1181.5869	0.58694431	212;170	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	2	0		1				20.786	20.786	2	0.030332	13211	DP1063-2	82.75	33.328			NaN	NaN	NaN	0	0	Median	6174300	0	6174300	269	170;212	258	531	1167	1167		1	9606
APDVAPEEVDESK	1	0	Unmodified	1384.6358	0.63580458	596	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	0	2	0		2				15.706	15.706	2	0.019325	6311	DP1063-2	83.081	23.174			NaN	NaN	NaN	0	0	Median	0	0	0	270	596	259	532;533	1168;1169	1168		2	9606
APFDLFENK	1	0	Unmodified	1079.5288	0.52876073	135	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2	0		1				21.025	21.025	2	8.7935E-08	13477	DP1063-2	153.04	123.89			1.5052	1.2592	NaN	1	0	Median	21038000	7976000	13062000	271	135	260	534	1170;1171;1172;1173;1174	1170		5	9606
APFDLFENR	0	1	Unmodified	1107.5349	0.53490874	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				21.244	21.244	2	6.8091E-08	13796	DP1063-2	155	155			2.2073	1.6388	NaN	1	0	Median	29538000	10909000	18629000	272	132	261	535	1175;1176;1177;1178	1177		4	9606
APGAGLGQDR	0	1	Unmodified	940.47264	0.47264284	316	P50402	EMD	Emerin	yes	yes	0	0	0	4	0				1		13.824	13.824	2	0.01489	5100	DP1063-4	91.069	54.048			NaN	NaN	NaN	0	0	Median	5114600	0	5114600	273	316	262	536	1179	1179		1	9606
APGSLMISGLTEAFVMAQSR	0	1	2 Oxidation (M)	2097.0235	0.023460919	51	O15037	KHNYN	Protein KHNYN	yes	yes	0	2	0	5	0					1	22.852	22.852	2	0.0036095	16761	DP1063-5	98.156	23.458			NaN	NaN	NaN	0	0	Median	237790000	0	237790000	274	51	263	537	1180;1181	1181	42;43	2	9606
APGTNVAMASNQAVR	0	1	Oxidation (M)	1501.7307	0.73072479	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	1	0	1.5	0.5	1	1				14.734	14.734	2	0.00075046	4246	DP1063-1	127.17	91.266			NaN	NaN	NaN	0	0	Median	7900500	0	7900500	275	314	264	538;539	1182;1183;1184;1185	1183	379	4	9606
APGTPHSHTKPYVR	1	1	Unmodified	1546.8005	0.80045934	447	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					1	12.572	12.572	3	0.00071691	4367	DP1063-5	108.72	69.155			1.2257	1.045	NaN	1	0	Median	6378200	2862100	3516100	276	447	265	540	1186;1187	1186		2	9606
APILIATDVASR	0	1	Unmodified	1225.703	0.7030367	178;568	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3.5	0.5			1	1		18.877	18.877	2	0.00036155	12157	DP1063-3	147.73	116.31			1.6766	1.2163	27.955	2	0	Median	59622000	22112000	37510000	277	568;178	266	541;542	1188;1189;1190;1191;1192	1191		5	9606
APIRPDIVNFVHTNLR	0	2	Unmodified	1861.0323	0.032250187	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		19.408	19.408	3;4	0.0010118	12379	DP1063-4	130.21	130.21			1.9591	1.7567	2.6432	2	0	Median	76071000	26691000	49380000	278	259	267	543;544	1193;1194;1195	1194		3	9606
APKPDGPGGGPGGSHMGGNYGDDR	1	1	Oxidation (M)	2267.9614	0.96140602	255	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3	0			1			13.248	13.248	3	0.018856	4569	DP1063-3	41.853	41.853			1.3589	1.2325	NaN	1	0	Median	4131700	1984700	2147100	279	255	268	545	1196	1196	305	1	9606
APSTYGGGLSVSSR	0	1	Unmodified	1337.6575	0.65754307	17	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	4	0				1		16.337	16.337	2	0.016271	8429	DP1063-4	108.9	60.62		+	NaN	NaN	NaN	0	0	Median	3546700	3546700	0	280	17	269	546	1197	1197		1	9606
APSTYGGGLSVSSSR	0	1	Unmodified	1424.6896	0.68957148	12	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	2.33	1.25	1	1		1		16.32	16.32	2	7.5155E-07	8272	DP1063-4	188.96	115.71		+	NaN	NaN	NaN	0	0	Median	17735000	17735000	0	281	12	270	547;548;549	1198;1199;1200;1201;1202	1201		5	9606
APSYLEISSMR	0	1	Oxidation (M)	1268.6071	0.60708741	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	0	2	0		1				17.893	17.893	2	0.0058451	9235	DP1063-2	83.883	56.579			0.8172	0.60884	NaN	1	0	Median	30852000	16880000	13972000	282	418	271	550	1203;1204	1204	515	2	9606
APSYLEISSMR	0	1	Unmodified	1252.6122	0.61217279	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				19.332	19.332	2	0.023218	11205	DP1063-2	84.817	50.097			NaN	NaN	NaN	0	0	Median	0	0	0	283	418	271	551	1205	1205		1	9606
APTADTQTQNVNQAK	1	0	Unmodified	1585.7696	0.76961272	678	Q9Y5V3	MAGED1	Melanoma-associated antigen D1	yes	yes	0	0	0	2	0		1				13.297	13.297	2	7.030100000000001E-25	3256	DP1063-2	236.69	194.34			NaN	NaN	NaN	0	0	Median	2134900	0	2134900	284	678	272	552	1206;1207	1206		2	9606
APVPGTPDSLSSGSSR	0	1	Unmodified	1513.7372	0.73724996	650	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				2		16.243	16.243	2	0.00090101	8260	DP1063-4	153.34	125.14			1.0532	0.67793	NaN	1	0	Median	6483600	2612800	3870900	285	650	273	553;554	1208;1209;1210	1208		3	9606
APVQPQQSPAAAPGGTDEKPSGK	2	0	Unmodified	2217.1026	0.10257418	464	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	2	0		1				14.082	14.082	3	0.00041912	4252	DP1063-2	106.42	61.78			NaN	NaN	NaN	0	0	Median	4255500	0	4255500	286	464	274	555	1211;1212	1212		2	9606
AQAAAPASVPAQAPK	1	0	Unmodified	1376.7412	0.74121312	299	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	5	0					1	14.796	14.796	2	0.002127	6808	DP1063-5	123.01	123.01			1.2061	1.0209	NaN	1	0	Median	24225000	10499000	13726000	287	299	275	556	1213;1214;1215;1216	1213		4	9606
AQAALAVNISAAR	0	1	Unmodified	1254.7044	0.70443369	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			17.706	17.706	2	2.5747E-13	10467	DP1063-3	202.96	202.96			4.4878	3.3402	NaN	1	0	Median	29701000	5239700	24461000	288	268	276	557	1217;1218	1218		2	9606
AQAAPEKEAAAVAPPER	1	1	Unmodified	1704.8795	0.87949752	596	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				14.872	14.872	3	0.0075853	5238	DP1063-2	90.422	60.363			NaN	NaN	NaN	0	0	Median	3924700	0	3924700	289	596	277	558	1219	1219		1	9606
AQAEQQHNPAANPTMIR	0	1	Oxidation (M)	1891.8959	0.89589264	1	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	1	0	1	0	1					14.266	14.266	3	0.047256	3711	DP1063-1	61.127	37.193			NaN	NaN	NaN	0	0	Median	974090	0	974090	290	1	278	559	1220	1220	2	1	9606
AQAVHPGYGFLSENK	1	0	Unmodified	1616.7947	0.79470526	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.29	0.452		5	2			17.232	17.232	2;3	1.1543E-39	9843	DP1063-3	249.69	217.44			1.3121	1.0536	3.3115	3	0	Median	306860000	118790000	188070000	291	110	279	560;561;562;563;564;565;566	1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237	1233		17	9606
AQAVHPGYGFLSENKEFAR	1	1	Unmodified	2120.0439	0.043937085	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.25	0.968		2	3	2	1	17.77	17.77	2;3;4	1.6153000000000002E-25	10554	DP1063-3	224.34	207.32			1.3585	1.2558	12.034	8	0	Median	780900000	320200000	460700000	292	110	280	567;568;569;570;571;572;573;574	1238;1239;1240;1241;1242;1243;1244;1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265	1253		28	9606
AQAVSEDAGGNEGR	0	1	Unmodified	1359.6015	0.60148476	340	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		1				13.13	13.13	2	1.73E-09	3030	DP1063-2	192.38	177.23			3.0687	2.2195	NaN	1	0	Median	18135000	4197200	13938000	293	340	281	575	1266;1267;1268;1269	1266		4	9606
AQCPIVER	0	1	Unmodified	971.48585	0.48585006	292	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	14.403	14.403	2	0.021884	6340	DP1063-5	93.374	52.147			1.6532	1.2347	NaN	1	0	Median	20556000	7224700	13331000	294	292	282	576	1270;1271;1272;1273	1271		4	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term);Oxidation (M)	1459.6362	0.6361557	399	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	1	5	0					1	12.996	12.996	2	0.00030304	4746	DP1063-5	98.182	77.184			1.8401	1.5688	NaN	1	0	Median	27181000	9389500	17792000	295	399	283	577	1274;1275;1276;1277	1277	489	4	9606
AQDQGEKENPMR	1	1	Acetyl (Protein N-term)	1443.6412	0.64124108	399	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	5	0					1	14.648	14.648	2	0.0075834	6587	DP1063-5	106.29	95.071			1.814	1.5465	NaN	1	0	Median	8909500	4201100	4708300	296	399	283	578	1278;1279;1280;1281	1279		4	9606
AQEIAMQNR	0	1	Oxidation (M)	1075.508	0.50804206	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			13.257	13.257	2	0.0016498	5362	DP1063-3	114.5	95.722			1.5408	1.1298	NaN	1	0	Median	12228000	3944000	8283900	297	624	284	579	1282;1283;1284;1285;1286	1285	747	5	9606
AQEIAMQNR	0	1	Unmodified	1059.5131	0.51312744	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	14.3	14.3	2	3.7635E-16	5846	DP1063-3	194.2	147.13			1.5872	0.97669	24.015	3	0	Plateau	295600000	113140000	182460000	298	624	284	580;581;582	1287;1288;1289;1290;1291;1292;1293;1294;1295;1296	1287		10	9606
AQENYEGSEEVSPPQTK	1	0	Unmodified	1891.8436	0.84356552	574	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1	0	2					15.722	15.722	2	0.0072077	5367	DP1063-1	90.731	57.502			NaN	NaN	NaN	0	0	Median	0	0	0	299	574	285	583;584	1297;1298	1297		2	9606
AQEPESGLSEETQVK	1	0	Unmodified	1630.7686	0.76860967	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.973	15.973	2	0.0027299	5656	DP1063-1	108.72	73.064			NaN	NaN	NaN	0	0	Median	1064600	1064600	0	300	420	286	585	1299;1300	1300		2	9606
AQFEGIVTDLIR	0	1	Unmodified	1360.7351	0.73506511	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		22.426	22.426	2	1.4815E-05	16868	DP1063-3	166.34	121.99			1.5135	1.1396	20.928	2	0	Median	94505000	30864000	63641000	301	263	287	586;587;588	1301;1302;1303;1304;1305;1306;1307;1308	1306		8	9606
AQFVPLPVSVSVEFAVAATDCIAK	1	0	Unmodified	2518.3141	0.31414686	18	CON__P12763			yes	yes	0	0	0	3	0			1			26.848	26.848	2	0.016456	22064	DP1063-3	79.97	45.149		+	NaN	NaN	NaN	0	0	Median	0	0	0	302	18	288	589	1309	1309		1	9606
AQIAGYLYGVSPPDNPQVK	1	0	Unmodified	2016.0316	0.031641064	536	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					20.172	20.172	2	0.005668	10550	DP1063-1	102.64	69.903			NaN	NaN	NaN	0	0	Median	0	0	0	303	536	289	590	1310	1310		1	9606
AQIFANTVDNAR	0	1	Unmodified	1318.663	0.6629628	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		17.208	17.208	2	8.187E-06	9351	DP1063-4	171.33	134.77			2.6483	2.0382	NaN	1	0	Median	52825000	13901000	38924000	304	118	290	591	1311;1312;1313;1314	1311		4	9606
AQIHDLVLVGGSTR	0	1	Unmodified	1464.8049	0.80487601	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.25	0.433			3	1		17.71	17.71	2;3	3.806E-05	10466	DP1063-3	164.13	164.13			3.256	2.7747	NaN	1	0	Median	177880000	39866000	138020000	305	149	291	592;593;594;595	1315;1316;1317;1318;1319;1320;1321	1318		7	9606
AQLEQSVEENKER	1	1	Unmodified	1558.7587	0.75871368	596	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				14.123	14.123	3	0.0014225	4297	DP1063-2	101.53	66.782			NaN	NaN	NaN	0	0	Median	10392000	0	10392000	306	596	292	596	1322;1323;1324	1324		3	9606
AQLGGPEAAK	1	0	Unmodified	940.49779	0.49779495	104	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	13.552	13.552	2	0.051113	5377	DP1063-5	76.17	47			NaN	NaN	NaN	0	0	Median	0	0	0	307	104	293	597	1325	1325		1	9606
AQLGVQAFADALLIIPK	1	0	Unmodified	1767.0295	0.02945622	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			25.632	25.632	2	0.0020131	20754	DP1063-3	127.17	127.17			1.7136	1.376	NaN	1	0	Median	2920800	1508700	1412100	308	268	294	598	1326;1327;1328	1326		3	9606
AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR	1	1	Oxidation (M)	3282.6047	0.60466793	400	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	1	4	0				1		22.048	22.048	3	0.00015507	15769	DP1063-4	81.904	63.803			NaN	NaN	NaN	0	0	Median	0	0	0	309	400	295	599	1329	1329	490	1	9606
AQNISSNANMLR	0	1	Oxidation (M)	1333.6408	0.64084715	481	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	1	0	1	0	1					14.867	14.867	2	0.011788	4424	DP1063-1	93.111	45.913			NaN	NaN	NaN	0	0	Median	1227600	0	1227600	310	481	296	600	1330;1331	1331	619	2	9606
AQPSASLGVGYR	0	1	Unmodified	1204.62	0.62003536	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	0			1			16.55	16.55	2	0.03298	8900	DP1063-3	78.939	40.185			NaN	NaN	NaN	0	0	Median	13518000	0	13518000	311	591	297	601	1332	1332		1	9606
AQPSVSLGAPYR	0	1	Unmodified	1244.6513	0.65133548	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	0			1			17.354	17.354	2	0.013093	10005	DP1063-3	81.95	81.95			1.1711	0.84594	NaN	1	0	Median	20149000	8683000	11466000	312	591	298	602	1333;1334;1335;1336	1335		4	9606
AQQELEEQTR	0	1	Unmodified	1230.584	0.58404378	212	P26038	MSN	Moesin	yes	yes	0	0	0	3	0			1			13.779	13.779	2	0.0028646	5221	DP1063-3	111.06	79.126			NaN	NaN	NaN	0	0	Median	2441100	0	2441100	313	212	299	603	1337;1338	1337		2	9606
AQQELEEQTRR	0	2	Unmodified	1386.6852	0.68515481	212	P26038	MSN	Moesin	yes	yes	0	0	1	3	0			1			13.117	13.117	3	0.016381	4440	DP1063-3	70.056	24.458			NaN	NaN	NaN	0	0	Median	6441700	0	6441700	314	212	300	604	1339	1339		1	9606
AQSLVISPPAPSPR	0	1	Unmodified	1418.7882	0.78816332	284	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.054	18.054	2	0.0023945	9445	DP1063-2	109.39	61.545			NaN	NaN	NaN	0	0	Median	8580900	0	8580900	315	284	301	605	1340	1340		1	9606
AQTLQMEIPNFGNSILECLNEQR	0	1	Acetyl (Protein N-term);Oxidation (M)	2762.3004	0.30036406	594	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	yes	yes	1	1	0	3	0			1			20.931	20.931	2	0.047025	14992	DP1063-3	43.813	19.282			NaN	NaN	NaN	0	0	Median	7518000	7518000	0	316	594	302	606	1341	1341	709	1	9606
AQVADVVVSR	0	1	Unmodified	1042.5771	0.57710791	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				16.162	16.162	2	0.00068634	5846	DP1063-1	117.53	47.27			2.7998	2.331	NaN	1	0	Median	36047000	6626400	29421000	317	303	303	607;608	1342;1343;1344;1345	1343		4	9606
AQVAMSTLPVEDEESSESR	0	1	Acetyl (Protein N-term);Oxidation (M)	2121.9372	0.93720791	418	P78347	GTF2I	General transcription factor II-I	yes	yes	1	1	0	2	0		1				19.613	19.613	2	1.7204E-17	11572	DP1063-2	198.48	138.03			0.88813	0.65186	NaN	1	0	Median	25591000	13226000	12364000	318	418	304	609	1346;1347;1348;1349;1350	1346	516	5	9606
AQVAMSTLPVEDEESSESR	0	1	Acetyl (Protein N-term)	2105.9423	0.94229329	418	P78347	GTF2I	General transcription factor II-I	yes	yes	1	0	0	2	0		1				21.532	21.532	2	0.0026799	14155	DP1063-2	114.56	82.124			NaN	NaN	NaN	0	0	Median	0	0	0	319	418	304	610	1351	1351		1	9606
AQVIYTR	0	1	Unmodified	849.47085	0.47085192	391	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	14.644	14.644	2	0.001359	6647	DP1063-5	138.37	100.81			1.8374	1.3723	NaN	1	0	Median	42801000	14563000	28237000	320	391	305	611	1352;1353;1354	1353		3	9606
AQVSLLIR	0	1	Unmodified	898.56	0.56000128	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		18.513	18.513	2	0.010788	11199	DP1063-4	111.01	52.026			1.5624	1.1065	NaN	1	0	Median	27534000	9294000	18240000	321	598	306	612	1355;1356;1357	1355		3	9606
AQVVHLLSTMDSPAST	0	0	Oxidation (M)	1671.8138	0.81378572	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.256	18.256	2	0.0014851	8192	DP1063-1	144.7	112.54			NaN	NaN	NaN	0	0	Median	0	0	0	322	43	307	613	1358;1359;1360	1359	34	3	9606
AQYEDIANR	0	1	Unmodified	1078.5043	0.5043369	15;30	CON__P05787;P05787;CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	0	4	0				1		15.387	15.387	2	0.0042036	7022	DP1063-4	110.31	79.236		+	2.3513	1.5121	NaN	1	0	Median	12931000	3504400	9427000	323	15;30	308	614	1361;1362;1363	1362		3	9606
AQYEDIAQK	1	0	Unmodified	1064.5138	0.51383895	101	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	2.5	0.5		1	1			14.977	14.977	2	0.0041221	6719	DP1063-3	153.04	115.88		+	NaN	NaN	NaN	0	0	Median	335560000	335560000	0	324	101	309	615;616	1364;1365;1366	1366		3	9606
ARDEFAEDR	0	2	Unmodified	1107.4945	0.49450049	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					13.579	13.579	2	0.0011126	2969	DP1063-1	123.75	87.302			1.1804	1.0849	NaN	1	0	Median	3049500	1378200	1671300	325	43	310	617	1367;1368	1368		2	9606
ARENPSEEAQNLVEFTDEEGYGR	0	2	Unmodified	2639.1736	0.17356687	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			1			20.044	20.044	3	4.6583E-06	13759	DP1063-3	96.181	96.181			1.2053	1.1019	NaN	1	0	Median	17479000	6687200	10792000	326	456	311	618	1369	1369		1	9606
ARFEELCSDLFR	0	2	Unmodified	1541.7297	0.72966216	149;176	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3.5	0.5			2	2		20.107	20.107	2;3	3.7827E-05	13787	DP1063-3	168.85	168.85			2.9834	2.7277	17.329	3	0	Median	299500000	66141000	233360000	327	176;149	312	619;620;621;622	1370;1371;1372;1373;1374;1375;1376;1377;1378;1379	1372		10	9606
ARFEELNADLFR	0	2	Unmodified	1479.747	0.74702678	153	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			2			19.845	19.845	2;3	1.5595E-07	13402	DP1063-3	199.82	199.82			3.3678	3.0791	0.08162	2	0	Median	237880000	53839000	184040000	328	153	313	623;624	1380;1381;1382;1383;1384;1385;1386;1387	1380		8	9606
ARPFPDGLAEDIDKGEVSAR	1	2	Unmodified	2142.0705	0.070545766	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	2	0		1				18.747	18.747	3	0.020824	10282	DP1063-2	88.983	63.785			NaN	NaN	NaN	0	0	Median	14141000	0	14141000	329	165	314	625	1388;1389	1388		2	9606
ARQVLIASHLPSYELR	0	2	Unmodified	1852.0319	0.031915836	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.03	18.03	3	0.029252	7945	DP1063-1	52.026	52.026			1.392	1.2795	NaN	1	0	Median	4383100	2140100	2242900	330	460	315	626	1390	1390		1	9606
ASAELALGENSEVLK	1	0	Unmodified	1529.7937	0.7937022	94	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	4	0				1		18.771	18.771	2	0.0060156	11589	DP1063-4	98.182	47.829			NaN	NaN	NaN	0	0	Median	2381500	0	2381500	331	94	316	627	1391;1392	1392		2	9606
ASAGHAVSIAQDDAGADDWETDPDFVNDVSEK	1	0	Unmodified	3331.4389	0.43890227	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	2	0		1				20.21	20.21	3	4.7075E-11	12394	DP1063-2	132.02	118.71			NaN	NaN	NaN	0	0	Median	7119400	0	7119400	332	488	317	628	1393;1394	1393		2	9606
ASALEQFVNSVR	0	1	Acetyl (Protein N-term)	1361.6939	0.69392858	656	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	1	0	0	4	0				1		25.955	25.955	2	9.0364E-20	20229	DP1063-4	219.72	139.73			2.4664	1.6865	NaN	1	0	Median	4719400	1709400	3010000	333	656	318	629	1395;1396;1397;1398	1397		4	9606
ASCLYGQLPK	1	0	Unmodified	1135.5696	0.56957969	140	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	0	0	5	0					1	17.403	17.403	2	0.017114	9957	DP1063-5	76.478	52.256			2.3418	1.9824	NaN	1	0	Median	16066000	5260900	10805000	334	140	319	630	1399;1400	1400		2	9606
ASEELQKDLEEVK	2	0	Acetyl (Protein N-term)	1558.7726	0.77263241	623	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	1	0	1	5	0					1	20.554	20.554	2	1.8625E-05	14122	DP1063-5	154.36	93.923			NaN	NaN	NaN	0	0	Median	7123900	0	7123900	335	623	320	631	1401	1401		1	9606
ASFVTEVLAHSGR	0	1	Acetyl (Protein N-term)	1414.7205	0.72047768	58	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	1	0	0	2	0		1				23.773	23.773	2	1.9477E-13	17013	DP1063-2	206.97	180.53			2.6143	1.9856	NaN	1	0	Median	6561600	1585500	4976100	336	58	321	632	1402;1403	1403		2	9606
ASGADSKGDDLSTAILK	2	0	Acetyl (Protein N-term)	1689.8421	0.84210896	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	1	2	0		1				19.02	19.02	2	7.1515E-05	10751	DP1063-2	171.73	110.57			NaN	NaN	NaN	0	0	Median	18256000	0	18256000	337	337	322	633	1404;1405	1404		2	9606
ASGNYATVISHNPETK	1	0	Unmodified	1687.8166	0.81656291	400	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4	0				2		15.598	15.598	2;3	0.000524	7363	DP1063-4	121.13	101.46			1.2085	0.83647	15.667	2	0	Median	22692000	9880200	12812000	338	400	323	634;635	1406;1407;1408;1409;1410;1411	1408		6	9606
ASGPPVSELITK	1	0	Unmodified	1197.6605	0.66050319	175	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	0	4	0				1		18.13	18.13	2	0.015814	10578	DP1063-4	78.653	18.486			1.2333	0.85367	NaN	1	0	Median	39772000	17445000	22327000	339	175	324	636	1412;1413;1414	1413		3	9606
ASGVAVSDGVIK	1	0	Acetyl (Protein N-term)	1143.6136	0.61355299	202	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	5	0					1	19.109	19.109	2	0.0013567	12215	DP1063-5	126.39	88.879			2.7372	2.317	NaN	1	0	Median	33070000	9335700	23734000	340	202	325	637	1415;1416;1417;1418	1417		4	9606
ASILNTWISLK	1	0	Unmodified	1244.7129	0.71287311	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	4	0				1		22.721	22.721	2	0.0041877	16595	DP1063-4	102.06	59.259			NaN	NaN	NaN	0	0	Median	1888200	1888200	0	341	194	326	638	1419;1420	1419		2	9606
ASITPGTILIILTGR	0	1	Unmodified	1524.9239	0.92392852	439	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				2		25.572	25.572	2;3	0.0011305	19833	DP1063-4	76.82	76.82			1.484	0.99933	0.21387	2	0	Median	16501000	6032600	10468000	342	439	327	639;640	1421;1422;1423;1424;1425;1426	1426		6	9606
ASLEAAIADAEQR	0	1	Unmodified	1343.6681	0.66810776	15	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3	0			1			19.727	19.727	2	0.00085742	13273	DP1063-3	144.55	89.466		+	2.2748	1.6234	NaN	1	0	Median	17211000	4891000	12320000	343	15	328	641	1427;1428	1427		2	9606
ASLGLADHR	0	1	Unmodified	938.49338	0.49337828	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				14.422	14.422	2	0.034039	4648	DP1063-2	70.816	16.04			1.2909	0.93431	NaN	1	0	Median	17458000	7409900	10048000	344	666	329	642	1429;1430;1431	1429		3	9606
ASLSLAPVNIFK	1	0	Acetyl (Protein N-term)	1300.7391	0.73908786	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	3	0			1			25.097	25.097	2	0.0032913	20488	DP1063-3	93.111	45.913			NaN	NaN	NaN	0	0	Median	33657000	0	33657000	345	419	330	643	1432;1433	1433		2	9606
ASMGTLAFDEYGRPFLIIK	1	1	Acetyl (Protein N-term);Oxidation (M)	2186.1082	0.10817683	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	1	1	3	0			1			23.73	23.73	2	6.4457E-18	18452	DP1063-3	203.87	158.51			3.8467	3.489	NaN	1	0	Median	24548000	4481900	20066000	346	301	331	644	1434;1435;1436;1437;1438;1439;1440	1434	352	7	9606
ASMGTLAFDEYGRPFLIIK	1	1	Acetyl (Protein N-term)	2170.1133	0.1132622	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	1	3	0			1			24.949	24.949	2	0.00010095	20010	DP1063-3	128.9	70.415			NaN	NaN	NaN	0	0	Median	1391800	0	1391800	347	301	331	645	1441	1441		1	9606
ASMQQQQQLASAR	0	1	Oxidation (M)	1461.6994	0.69942466	672	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4.75	0.433				1	3	13.53	13.53	2	0.00014224	4767	DP1063-4	157.38	157.38			2.0662	1.3203	NaN	1	0	Median	13745000	5947400	7797600	348	672	332	646;647;648;649	1442;1443;1444;1445;1446;1447;1448;1449	1443	780	8	9606
ASMQQQQQLASAR	0	1	Unmodified	1445.7045	0.70451004	672	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	4	0				1		14.668	14.668	2	0.00096021	6164	DP1063-4	129.74	99.172			1.5269	1.0789	NaN	1	0	Median	3970900	1880500	2090500	349	672	332	650	1450;1451;1452;1453;1454	1452		5	9606
ASNGDAWVEAHGK	1	0	Unmodified	1340.6109	0.61092723	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			2			14.722	14.722	2;3	0.0012333	6433	DP1063-3	90.793	90.793			1.7159	1.3779	9.6948	2	0	Median	41641000	14940000	26701000	350	263	333	651;652	1455;1456;1457;1458;1459;1460	1456		6	9606
ASPSPTDPVVPAVPIGPPPAGFR	0	1	Unmodified	2225.1845	0.18445331	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.295	1	21	1			26.504	26.504	2;3	4.4397E-29	13680	DP1063-2	219.97	219.97			0.59492	0.48916	17.041	4	0	Median	654170000	392140000	262020000	351	154	334	653;654;655;656;657;658;659;660;661;662;663;664;665;666;667;668;669;670;671;672;673;674;675	1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471;1472;1473;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504	1463		44	9606
ASPSPTDPVVPAVPIGPPPAGFRDILLR	0	2	Unmodified	2835.5647	0.56469931	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				22.73	22.73	3	0.00032535	15686	DP1063-2	63.979	63.979			0.43848	0.40832	NaN	1	0	Median	10111000	6219200	3891500	352	154	335	676	1505	1505		1	9606
ASSTSLTSTQPTK	1	0	Unmodified	1307.6569	0.65687437	256	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	0	1					13.925	13.925	2	0.010052	3337	DP1063-1	89.561	53.004			NaN	NaN	NaN	0	0	Median	1327600	0	1327600	353	256	336	677	1506;1507	1507		2	9606
ASTALSNEQQAR	0	1	Unmodified	1274.6215	0.62149192	161	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	0	1					13.525	13.525	2	0.00045792	2892	DP1063-1	139.38	139.38			1.8495	1.6192	NaN	1	0	Median	1656200	484930	1171300	354	161	337	678	1508;1509;1510;1511	1508		4	9606
ASVAAQQQEEAR	0	1	Unmodified	1286.6215	0.62149192	546	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	2	0		1				13.01	13.01	2	0.00035431	2936	DP1063-2	135.43	89.27			NaN	NaN	NaN	0	0	Median	0	0	0	355	546	338	679	1512	1512		1	9606
ASYVAPLTAQPATYR	0	1	Unmodified	1607.8308	0.83075641	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	0			1			18.239	18.239	2	0.003138	11197	DP1063-3	97.911	97.911			1.1927	0.89309	NaN	1	0	Median	32140000	14020000	18120000	356	591	339	680	1513;1514;1515;1516	1513		4	9606
ATAEVLNIGK	1	0	Acetyl (Protein N-term)	1056.5815	0.58152458	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	1	0	0	4	0				1		20.88	20.88	2	0.0034493	14341	DP1063-4	109.71	70.168			3.0631	2.1202	NaN	1	0	Median	8987100	2076900	6910200	357	194	340	681	1517;1518	1517		2	9606
ATAEVLNIGKK	2	0	Acetyl (Protein N-term)	1184.6765	0.6764876	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	1	0	1	4	0				1		18.609	18.609	2	2.4729E-06	11338	DP1063-4	150.27	100.73			3.6081	3.7471	NaN	1	0	Median	10613000	2807300	7805400	358	194	341	682	1519;1520	1520		2	9606
ATAGDTHLGGEDFDNR	0	1	Unmodified	1674.7234	0.72339081	149;176	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.33	0.471			4	2		15.721	15.721	2;3	2.5907E-84	7790	DP1063-3	318.47	310.06			3.0364	3.2421	28.968	4	0	Linear	886690000	185370000	701320000	359	176;149	342	683;684;685;686;687;688	1521;1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533	1526		13	9606
ATAPQTQHVSPMR	0	1	Oxidation (M)	1438.6987	0.69869638	228	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	1	0	3.5	0.5			1	1		12.772	12.772	3	0.0010003	3961	DP1063-4	90.793	90.793			1.9968	1.2594	NaN	1	0	Median	12597000	3626100	8970500	360	228	343	689;690	1534;1535;1536;1537;1538	1536	278	5	9606
ATAPQTQHVSPMR	0	1	Unmodified	1422.7038	0.70378176	228	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		13.71	13.71	3	0.052875	5031	DP1063-4	53.001	21.816			NaN	NaN	NaN	0	0	Median	2432000	0	2432000	361	228	343	691	1539	1539		1	9606
ATAVVDGAFK	1	0	Unmodified	977.5182	0.51819605	241	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	5	0					2	16.417	16.417	2	0.0078179	8791	DP1063-5	98.033	61.332			NaN	NaN	NaN	0	0	Median	8466400	0	8466400	362	241	344	692;693	1540;1541;1542	1540		3	9606
ATCAPQHGAPGPGPADASK	1	0	Unmodified	1788.8213	0.82133071	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				13.262	13.262	3	2.5926E-06	2610	DP1063-1	159.18	143.36			9.2838	7.2605	NaN	1	0	Median	14754000	709560	14044000	363	190	345	694;695	1543;1544;1545;1546;1547;1548;1549	1544		7	9606
ATDVMIAGK	1	0	Oxidation (M)	920.46372	0.46371763	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	1	0	4	0				1		14.176	14.176	2	0.0077841	5530	DP1063-4	87.181	44.267			2.4905	1.7239	NaN	1	0	Median	7906100	2110400	5795700	364	201	346	696	1550;1551	1551	258	2	9606
ATENDIYNFFSPLNPVR	0	1	Unmodified	1995.969	0.96904081	237;327	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	3.67	0.471			1	2		24.025	24.025	2;3	4.1094E-68	18836	DP1063-3	274.59	274.59			1.3304	0.99752	5.0944	3	0	Plateau	67167000	26931000	40236000	365	237;327	347	697;698;699	1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566	1553		15	9606
ATFDAISK	1	0	Unmodified	851.43888	0.43888309	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.069	16.069	2	0.012342	8021	DP1063-4	107.9	72.695			2.1984	1.5217	NaN	1	0	Median	34348000	10986000	23362000	366	172	348	700	1567;1568	1568		2	9606
ATFVSSVRPESSR	0	2	Unmodified	1421.7263	0.72629134	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.75	0.829		2	1	1		15.318	15.318	2;3	0.00098045	5721	DP1063-2	146.11	97.919			NaN	NaN	NaN	0	0	Median	1103300000	0	1103300000	367	524	349	701;702;703;704	1569;1570;1571;1572;1573;1574;1575	1571		7	9606
ATGILLYGLASR	0	1	Unmodified	1233.7081	0.70812208	298	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	2	0		1				21.173	21.173	2	0.0057155	13732	DP1063-2	97.452	43.386			NaN	NaN	NaN	0	0	Median	2338600	0	2338600	368	298	350	705	1576	1576		1	9606
ATIAGGGVIPHIHK	1	0	Unmodified	1369.783	0.78301836	144	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	15.959	15.959	3	0.014316	8187	DP1063-5	50.897	50.897			1.6159	1.3678	NaN	1	0	Median	45050000	16768000	28282000	369	144	351	706	1577;1578;1579	1578		3	9606
ATIELCSTHANDASALR	0	1	Unmodified	1828.8738	0.87376021	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				16.777	16.777	2	0.030185	7720	DP1063-2	76.357	30.288			NaN	NaN	NaN	0	0	Median	0	0	0	370	336	352	707	1580	1580		1	9606
ATISNDGATILK	1	0	Unmodified	1202.6507	0.65066678	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			17.005	17.005	2	0.002769	9561	DP1063-3	98.754	35.335			4.021	3.2289	NaN	1	0	Median	33712000	6580500	27131000	371	601	353	708	1581;1582	1582		2	9606
ATLKDQLIYNLLK	2	0	Acetyl (Protein N-term)	1573.9079	0.9079441	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	1	4	0				1		23.85	23.85	2	1.8961000000000002E-27	17909	DP1063-4	226.33	182.91			2.2495	2.3362	NaN	1	0	Median	4725300	1587800	3137500	372	91	354	709	1583;1584;1585	1583		3	9606
ATLKDQLIYNLLKEEQTPQNK	3	0	Acetyl (Protein N-term)	2528.3486	0.34861811	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	2	4	0				1		22.268	22.268	3	3.0248E-05	16085	DP1063-4	140.56	111.09			NaN	NaN	NaN	0	0	Median	5768000	0	5768000	373	91	355	710	1586	1586		1	9606
ATLNAFLYR	0	1	Unmodified	1067.5764	0.57637963	634	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			19.96	19.96	2	0.0070645	13578	DP1063-3	100.45	60.805			1.8572	1.3491	NaN	1	0	Median	21668000	7045800	14623000	374	634	356	711	1587;1588;1589;1590	1587		4	9606
ATLVDHGIR	0	1	Unmodified	980.54033	0.54032847	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.25	0.433	3	1				14.584	14.584	2;3	2.5304E-16	4093	DP1063-1	199.07	94.621			1.322	1.1639	16.41	2	0	Median	330760000	141180000	189580000	375	460	357	712;713;714;715	1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601	1593		11	9606
ATLVDHGIRR	0	2	Unmodified	1136.6414	0.6414395	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					13.632	13.632	2;3	3.8181E-06	2988	DP1063-1	124.08	47.253			1.624	1.4927	23.434	2	0	Median	10349000	4280200	6069200	376	460	358	716;717	1602;1603;1604;1605;1606;1607	1602		6	9606
ATLYVTAIEDR	0	1	Unmodified	1250.6507	0.65066678	602	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	4	0				1		19.008	19.008	2	2.4013E-09	11863	DP1063-4	179.81	125.03			1.8367	1.1817	NaN	1	0	Median	12976000	4777600	8198500	377	602	359	718	1608;1609;1610	1609		3	9606
ATNFLAHEK	1	0	Acetyl (Protein N-term)	1071.5349	0.53490874	228	P29692	EEF1D	Elongation factor 1-delta	yes	yes	1	0	0	4	0				1		18.019	18.019	2	0.00029131	10483	DP1063-4	131.52	103.3			2.3061	1.5962	NaN	1	0	Median	34156000	9743900	24412000	378	228	360	719	1611;1612;1613;1614	1613		4	9606
ATQAHSLSYAGCNFLR	0	1	Acetyl (Protein N-term)	1836.8577	0.85771622	667	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	1	0	0	4	0				1		19.906	19.906	2	0.002957	13081	DP1063-4	101.6	67.595			NaN	NaN	NaN	0	0	Median	0	0	0	379	667	361	720	1615	1615		1	9606
ATQALVLAPTR	0	1	Unmodified	1139.6663	0.66625727	350	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	4	0				3		17.328	17.328	2	2.9312E-05	9680	DP1063-4	143.89	104.87			NaN	NaN	NaN	0	0	Median	8056200	0	8056200	380	350	362	721;722;723	1616;1617;1618;1619	1616		4	9606
ATQQQHDFTLTQTADGR	0	1	Unmodified	1916.8977	0.89766678	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	2					16.007	16.007	2;3	1.2527000000000001E-54	5661	DP1063-1	261.17	261.17			2.5056	2.0491	NaN	1	0	Median	20229000	6461300	13768000	381	420	363	724;725	1620;1621;1622;1623;1624;1625	1621		6	9606
ATSFLLALEPELEAR	0	1	Unmodified	1658.8879	0.88793694	105	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	3	0			1			23.694	23.694	2	0.0035591	18445	DP1063-3	124.21	124.21			1.6683	1.2685	NaN	1	0	Median	8096500	3271500	4825000	382	105	364	726	1626	1626		1	9606
ATSSSSGSLSATGR	0	1	Unmodified	1267.6004	0.60042213	441	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	3	0			1			13.316	13.316	2	2.2992E-08	4688	DP1063-3	181.4	181.4			1.9736	1.5209	NaN	1	0	Median	6951200	1832000	5119100	383	441	365	727	1627;1628;1629;1630	1629		4	9606
ATTATMATSGSAR	0	1	Acetyl (Protein N-term);Oxidation (M)	1282.5823	0.58232922	264	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	1	0	4	0				1		14.779	14.779	2	3.7008E-06	6303	DP1063-4	167.12	131.82			1.9745	1.2269	NaN	1	0	Median	9884100	3448700	6435400	384	264	366	728	1631;1632;1633;1634	1633	319	4	9606
ATTATMATSGSAR	0	1	Acetyl (Protein N-term)	1266.5874	0.5874146	264	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	0	0	4	0				1		16.288	16.288	2	0.017289	8354	DP1063-4	76.143	34.695			NaN	NaN	NaN	0	0	Median	1707500	0	1707500	385	264	366	729	1635;1636;1637	1637		3	9606
ATVLESEGTR	0	1	Unmodified	1061.5353	0.53530267	650	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				1		14.727	14.727	2	0.0030766	6224	DP1063-4	109.71	63.288			NaN	NaN	NaN	0	0	Median	3561600	0	3561600	386	650	367	730	1638	1638		1	9606
ATVTATTK	1	0	Acetyl (Protein N-term)	833.44945	0.44944778	660	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	1	0	0	3	0			1			14.711	14.711	1	0.0046252	6398	DP1063-3	110.12	56.768			3.6725	2.949	NaN	1	0	Median	12016000	2434700	9581700	387	660	368	731	1639	1639		1	9606
AVAALLTIPEAEK	1	0	Unmodified	1324.7602	0.76021723	548	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				20.373	20.373	2	0.028307	12591	DP1063-2	80.706	33.519			NaN	NaN	NaN	0	0	Median	4966100	0	4966100	388	548	369	732	1640	1640		1	9606
AVAFQNPQTHVIENLHAAAYR	0	1	Unmodified	2349.1978	0.19781197	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				2		18.335	18.335	3;4	1.9035E-06	10963	DP1063-4	126.4	126.4			1.3325	0.87789	13.353	2	0	Median	33094000	12037000	21057000	389	198	370	733;734	1641;1642;1643;1644;1645;1646;1647;1648	1647		8	9606
AVAHHTDCTFIR	0	1	Unmodified	1426.6776	0.67756701	367	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	4	0				1		13.924	13.924	3	0.00028299	5175	DP1063-4	106.67	90.725			2.3085	1.4843	NaN	1	0	Median	12918000	3271600	9646100	390	367	371	735	1649;1650;1651;1652	1649		4	9606
AVAHHTTAAFIR	0	1	Unmodified	1293.6942	0.69420335	282	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	4	0				1		13.75	13.75	3	0.0015864	4978	DP1063-4	86.463	86.463			1.6979	1.0615	NaN	1	0	Median	7559800	2469300	5090500	391	282	372	736	1653;1654;1655	1653		3	9606
AVAQALEVIPR	0	1	Unmodified	1165.6819	0.68190733	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			19.14	19.14	2	0.0024217	12440	DP1063-3	104.42	53.231			3.8066	3.0041	NaN	1	0	Median	63531000	12968000	50562000	392	304	373	737	1656;1657	1656		2	9606
AVATYHANTER	0	1	Unmodified	1231.5945	0.59454889	321	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	1	0	1					12.887	12.887	3	0.0030861	2210	DP1063-1	72.2	46.287			2.0182	1.877	NaN	1	0	Median	791230	245190	546040	393	321	374	738	1658	1658		1	9606
AVCMLSNTTAIAEAWAR	0	1	Oxidation (M)	1879.8921	0.89205282	413	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	1	0	3.5	0.5			2	2		20.864	20.864	2;3	1.3561E-30	14805	DP1063-3	226.42	194.43			2.4033	1.689	12.726	4	0	Median	206750000	63126000	143620000	394	413	375	739;740;741;742	1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672	1660	508	14	9606
AVCMLSNTTAIAEAWAR	0	1	Unmodified	1863.8971	0.89713819	413	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	3.33	0.471			2	1		22.365	22.365	2;3	7.241E-15	16812	DP1063-3	266.93	266.93			1.6812	1.5057	19.076	3	0	Plateau	93935000	31163000	62773000	395	413	375	743;744;745	1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683	1676		11	9606
AVCMLSNTTAVAEAWAR	0	1	Oxidation (M)	1865.8764	0.87640275	605	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	3.5	0.5			1	1		20.021	20.021	2	1.3951E-14	13672	DP1063-3	195.77	175.93			1.9646	1.5204	NaN	1	0	Median	53736000	15951000	37786000	396	605	376	746;747	1684;1685;1686;1687;1688;1689;1690	1684	735	7	9606
AVCMLSNTTAVAEAWAR	0	1	Unmodified	1849.8815	0.88148813	605	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	0	3.5	0.5			1	1		21.547	21.547	2	5.1872E-09	15759	DP1063-3	178.95	145.87			2.0152	1.471	NaN	1	0	Median	23075000	7174200	15901000	397	605	376	748;749	1691;1692;1693	1692		3	9606
AVDDGVNTFK	1	0	Unmodified	1064.5138	0.51383895	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			16.224	16.224	2	0.0093989	8457	DP1063-3	85.862	39.89			3.9662	3.1848	NaN	1	0	Median	48029000	9969000	38060000	398	319	377	750	1694;1695;1696	1696		3	9606
AVDFAER	0	1	Unmodified	806.39227	0.39226725	400	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4	0				1		15.515	15.515	2	0.01618	7230	DP1063-4	121.29	80.372			1.6393	1.1567	NaN	1	0	Median	26745000	11555000	15190000	399	400	378	751	1697;1698	1698		2	9606
AVDIPHMDIEALK	1	0	Oxidation (M)	1466.7439	0.74391524	397	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					1	17.841	17.841	3	0.0029618	10588	DP1063-5	71.548	51.312			0.51493	0.43588	NaN	1	0	Median	22083000	12914000	9168800	400	397	379	752	1699	1699	487	1	9606
AVDIPHMDIEALKK	2	0	Oxidation (M)	1594.8389	0.83887826	397	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	1	5	0					1	16.642	16.642	3	0.0018846	8973	DP1063-5	77.279	58.446			1.6955	1.6566	NaN	1	0	Median	13239000	5114000	8124800	401	397	380	753	1700;1701	1700	487	2	9606
AVDSLVPIGR	0	1	Unmodified	1025.5869	0.58694431	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.669	18.669	2	0.00016475	11874	DP1063-3	127.46	94.569			1.4213	1.1146	NaN	1	0	Median	58539000	23330000	35209000	402	207	381	754	1702;1703;1704;1705	1704		4	9606
AVEHLDDLPGALSELSDLHAHK	1	0	Unmodified	2366.1866	0.18663816	11	CON__P01966			yes	yes	0	0	0	5	0					1	20.213	20.213	4	0.03742	13741	DP1063-5	50.858	27.876		+	NaN	NaN	NaN	0	0	Median	8475400	8475400	0	403	11	382	755	1706	1706		1	
AVELAANTK	1	0	Unmodified	915.50255	0.50254598	227	P29401	TKT	Transketolase	yes	yes	0	0	0	3	0			1			14.181	14.181	2	0.047686	5745	DP1063-3	87.696	48.89			NaN	NaN	NaN	0	0	Median	0	0	0	404	227	383	756	1707	1707		1	9606
AVENSSTAIGIR	0	1	Unmodified	1216.6412	0.64116473	210	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	5	0					1	16.011	16.011	2	0.00094126	8295	DP1063-5	126.07	71.004			NaN	NaN	NaN	0	0	Median	11228000	0	11228000	405	210	384	757	1708;1709	1708		2	9606
AVEVQGPSLESGDHGK	1	0	Unmodified	1608.7744	0.77436375	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	2	0		1				15.401	15.401	3	0.041232	5926	DP1063-2	68.978	21.751			NaN	NaN	NaN	0	0	Median	0	0	0	406	455	385	758	1710	1710		1	9606
AVFPSIVGR	0	1	Unmodified	944.54435	0.54435122	349;409;411	P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P63267;P62736	ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	4	0				1		19.33	19.33	2	0.0020643	12221	DP1063-4	116.9	77.685			NaN	NaN	NaN	0	0	Median	34642000	0	34642000	407	349;409;411	386	759	1711	1711		1	9606
AVFPSIVGRPR	0	2	Unmodified	1197.6982	0.6982261	349;409;411	P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P63267;P62736	ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	4.33	0.471				2	1	17.66	17.66	2;3	0.00063509	9882	DP1063-4	109.11	109.11			11.056	9.9139	208.69	2	0	Median	175190000	16161000	159020000	408	349;409;411	387	760;761;762	1712;1713;1714;1715;1716;1717;1718	1715		7	9606
AVFQANQENLPILK	1	0	Unmodified	1583.8671	0.86714192	107	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				20.268	20.268	2	0.054008	12478	DP1063-2	73.9	36.184			NaN	NaN	NaN	0	0	Median	8921100	0	8921100	409	107	388	763	1719	1719		1	9606
AVFVDLEPTVIDEVR	0	1	Unmodified	1700.8985	0.89850163	413;605	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3.12	0.525		1	20	2	1	25.986	25.986	2;3	1.1912E-52	16233	DP1063-4	271.21	271.21			1.9297	1.3389	20.573	6	0	Plateau	734040000	243360000	490680000	410	413;605	389	764;765;766;767;768;769;770;771;772;773;774;775;776;777;778;779;780;781;782;783;784;785;786;787	1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767	1756		48	9606
AVIGMTAGATGAFVGTPAEVALIR	0	1	Oxidation (M)	2288.2199	0.21985254	440	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	1	0	4	0				2		21.861	21.861	2	1.3277E-05	15589	DP1063-4	131.72	111.59			NaN	NaN	NaN	0	0	Median	3385800	0	3385800	411	440	390	788;789	1768;1769;1770	1769	549	3	9606
AVLFCLSEDKK	2	0	Unmodified	1308.6748	0.67477304	202	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	5	0					1	17.869	17.869	3	0.01845	10572	DP1063-5	62.408	44.218			2.5906	2.5312	NaN	1	0	Median	15021000	4258000	10763000	412	202	391	790	1771	1771		0	9606
AVLVDLEPGTMDSVR	0	1	Oxidation (M)	1616.808	0.80797206	414	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	yes	no	0	1	0	3.5	0.5			1	1		19.416	19.416	2	0.0017977	12385	DP1063-4	86.463	66.804			2.1168	1.6664	13.233	2	0	Median	220140000	66481000	153660000	413	414	392	791;792	1772;1773;1774;1775;1776;1777;1778;1779;1780	1780	513	9	9606
AVNVYSTSVTSDNLSR	0	1	Acetyl (Protein N-term)	1753.8483	0.84825697	514	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	1	0	0	4	0				1		20.412	20.412	2	0.026226	13817	DP1063-4	66.498	66.498			1.6811	1.0785	NaN	1	0	Median	12688000	4227700	8460300	414	514	393	793	1781	1781		1	9606
AVNYVGAGTVEFIMDSK	1	0	Oxidation (M)	1815.8713	0.8713006	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0.816		2	2	2		20.617	20.617	2;3	0.00011203	12962	DP1063-2	158.31	158.31			1.4863	1.1834	5.973	5	0	Median	456600000	185700000	270900000	415	595	394	794;795;796;797;798;799	1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795;1796;1797;1798;1799;1800	1786	711	19	9606
AVNYVGAGTVEFIMDSK	1	0	Unmodified	1799.8764	0.87638598	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				22.261	22.261	2	3.0057E-09	15073	DP1063-2	184.98	184.98			1.6444	1.3757	NaN	1	0	Median	61391000	20496000	40895000	416	595	394	800	1801;1802;1803;1804;1805	1802		5	9606
AVPETRPNHTIYINNLNEK	1	1	Acetyl (Protein N-term)	2264.1549	0.1549441	139	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	1	0	1	4	0				1		17.656	17.656	3	0.0044117	10026	DP1063-4	57.616	41.891			1.6218	1.5768	NaN	1	0	Median	8863100	3724600	5138500	417	139	395	801	1806;1807	1806		2	9606
AVPLALALISVSNPR	0	1	Unmodified	1519.9086	0.9086128	464	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	2	0		2				23.528	23.528	2;3	0.00079037	16704	DP1063-2	80.102	80.102			1.7371	1.3139	4.0533	2	0	Median	15635000	5078200	10557000	418	464	396	802;803	1808;1809;1810;1811	1810		4	9606
AVPPTYADLGK	1	0	Acetyl (Protein N-term)	1172.6077	0.60773933	191	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	1	0	0	4	0				2		20.229	20.229	2	0.03014	13495	DP1063-4	74.376	38.758			NaN	NaN	NaN	0	0	Median	0	0	0	419	191	397	804;805	1812;1813	1812		2	9606
AVQAQGGESQQEAQR	0	1	Unmodified	1585.7445	0.7444606	496	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					12.803	12.803	2	0.0078805	2094	DP1063-1	89.9	47.564			NaN	NaN	NaN	0	0	Median	0	0	0	420	496	398	806	1814	1814		1	9606
AVTELNEPLSNEDR	0	1	Unmodified	1585.7584	0.75837933	445	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	5	0					1	17.244	17.244	2	0.00029144	9828	DP1063-5	159.83	93.773			NaN	NaN	NaN	0	0	Median	6325700	0	6325700	421	445	399	807	1815;1816	1816		2	9606
AVTEQGAELSNEER	0	1	Unmodified	1531.7114	0.71142914	219	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	5	0					2	15.169	15.169	2	5.3625E-24	7382	DP1063-5	203.02	136.83			NaN	NaN	NaN	0	0	Median	0	0	0	422	219	400	808;809	1817;1818	1818		2	9606
AVTEQGHELSNEER	0	1	Unmodified	1597.7332	0.73322721	238	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	4.67	0.471				1	2	13.746	13.746	2;3	7.4355E-05	5563	DP1063-5	174.23	136.54			2.8173	1.9538	33.273	2	0	Median	28925000	7332400	21593000	423	238	401	810;811;812	1819;1820;1821;1822;1823;1824;1825;1826;1827	1826		9	9606
AVTIFIR	0	1	Unmodified	818.50142	0.50142377	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			18.93	18.93	2	0.027447	12188	DP1063-3	105.27	42.93			4.6874	3.6316	NaN	1	0	Median	50007000	9339900	40667000	424	301	402	813	1828	1828		1	9606
AVVAQAVR	0	1	Unmodified	812.48684	0.48683634	80	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				13.855	13.855	2	0.039299	3966	DP1063-2	79.454	31.28			2.0057	1.5269	NaN	1	0	Median	6386000	2040900	4345100	425	80	403	814	1829	1829		1	9606
AVVGVVAGGGR	0	1	Unmodified	940.54541	0.54541385	400	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4.5	0.5				1	1	15.306	15.306	2	2.1066E-05	6997	DP1063-4	133.55	72.866			1.6878	1.2678	NaN	1	0	Median	52941000	14460000	38481000	426	400	404	815;816	1830;1831;1832;1833;1834;1835	1830		6	9606
AVVIVDDR	0	1	Unmodified	885.49198	0.4919813	199;505	P23246;Q15233	SFPQ;NONO	Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein	no	no	0	0	0	2.5	0.5		1	1			15.918	15.918	2	0.00018083	6593	DP1063-2	140.98	96.292			2.5498	1.9409	3.2589	2	0	Median	80682000	21709000	58973000	427	199;505	405	817;818	1836;1837;1838;1839	1837		4	9606
AVVMDLLR	0	1	Unmodified	915.52117	0.52117293	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				20.447	20.447	2	0.00018083	10862	DP1063-1	140.98	78.269			1.3925	1.188	13.135	2	0	Median	220240000	90423000	129810000	428	460	406	819;820	1840;1841;1842;1843;1844;1845;1846;1847	1841		8	9606
AVVMDLLR	0	1	Oxidation (M)	931.51609	0.51608756	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				18.465	18.465	2	0.025992	9891	DP1063-2	75.854	37.616			1.441	1.1747	NaN	1	0	Median	289770000	39399000	250380000	429	460	406	821;822	1848;1849;1850	1850	561	3	9606
AVVVNAAQLASYSQSK	1	0	Unmodified	1634.8628	0.86278482	440	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		18.796	18.796	2	3.2106E-30	11544	DP1063-4	231.67	231.67			1.5163	1.0495	NaN	1	0	Median	12525000	4333100	8192000	430	440	407	823	1851;1852;1853;1854	1851		4	9606
AYAQGISR	0	1	Unmodified	864.44537	0.44536545	71	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	4	0				1		14.034	14.034	2	0.0093487	5323	DP1063-4	113.89	44.506			2.779	1.7556	NaN	1	0	Median	11251000	3132200	8118700	431	71	408	824	1855;1856;1857	1855		3	9606
AYGGAYDVMSSK	1	0	Oxidation (M)	1263.5442	0.5441528	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		15.332	15.332	2	0.00047152	7226	DP1063-3	115.7	115.7			1.5548	1.1591	12.497	2	0	Median	79347000	29335000	50012000	432	111	409	825;826	1858;1859;1860;1861;1862;1863	1858	95	6	9606
AYGGAYDVMSSK	1	0	Unmodified	1247.5492	0.54923818	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.284	17.284	2	0.0030897	9904	DP1063-3	98.04	79.778			1.2391	0.99503	NaN	1	0	Median	26611000	11708000	14903000	433	111	409	827	1864;1865	1864		2	9606
AYGPGIEPTGNMVK	1	0	Oxidation (M)	1448.697	0.69696505	190	P21333	FLNA	Filamin-A	yes	yes	0	1	0	1	0	1					16.363	16.363	2	0.0014486	6056	DP1063-1	99.343	99.343			8.4565	6.6779	NaN	1	0	Median	8852800	1244300	7608500	434	190	410	828	1866;1867	1867	239	2	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Oxidation (M)	2765.2789	0.27890034	413	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	1	0	3.33	0.471			2	1		19.686	19.686	2;3	3.1989E-09	13192	DP1063-3	152.66	134.56			1.8018	1.4468	16.608	3	0	Median	166470000	52419000	114050000	435	413	411	829;830;831	1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878	1869	509	11	9606
AYHEQLSVAEITNACFEPANQMVK	1	0	Unmodified	2749.284	0.28398571	413	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	3	0			1			20.398	20.398	3	5.3275E-16	14178	DP1063-3	185.16	157.73			1.8569	1.4911	NaN	1	0	Median	30799000	9362600	21436000	436	413	411	832	1879;1880;1881	1879		3	9606
AYHEQLTVAEITNACFEPANQMVK	1	0	Oxidation (M)	2779.2946	0.2945504	605	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	3.5	0.5			1	1		19.78	19.78	3	3.0468E-06	13353	DP1063-3	159.53	139.6			NaN	NaN	NaN	0	0	Median	31545000	0	31545000	437	605	412	833;834	1882;1883;1884;1885	1883	736	4	9606
AYIAYELNSVQHR	0	1	Unmodified	1562.7841	0.78414057	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.44	0.864	12	2	1	1		18.35	18.35	2;3	1.1855E-51	7638	DP1063-1	271.37	271.37			1.3285	1.3656	22.948	5	0	Plateau	770870000	326260000	444610000	438	460	413	835;836;837;838;839;840;841;842;843;844;845;846;847;848;849;850	1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913	1893		28	9606
AYNMVDIIHSVVDER	0	1	Oxidation (M)	1775.8512	0.85123386	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		19.556	19.556	2;3	5.4434E-06	12996	DP1063-3	162.67	162.67			1.409	1.1746	4.9569	3	0	Plateau	193900000	82610000	111290000	439	111	414	851;852;853	1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925	1915	96	12	9606
AYNMVDIIHSVVDER	0	1	Unmodified	1759.8563	0.85631924	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			22.841	22.841	2;3	1.0813E-13	17397	DP1063-3	190.34	168.78			1.5295	1.1441	15.299	2	0	Median	65134000	25586000	39549000	440	111	414	854;855	1926;1927;1928;1929;1930;1931	1931		6	9606
AYSEALAAFGNGALFVEK	1	0	Unmodified	1856.9309	0.93086439	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.764		4	1	1		22.853	22.853	2;3	7.222100000000001E-24	15769	DP1063-2	214.61	189.92			1.4239	1.1671	19.333	4	0	Median	364290000	147640000	216650000	441	154	415	856;857;858;859;860;861	1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959	1933		28	9606
AYVEANQMLGDLIK	1	0	Oxidation (M)	1579.7916	0.79159371	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.75	0.829		2	1	1		21.867	21.867	2	8.2435E-06	11813	DP1063-2	172.21	134.62			1.5069	1.2607	13.926	3	0	Plateau	289170000	113380000	175790000	442	154	416	862;863;864;865	1960;1961;1962;1963;1964;1965;1966;1967	1961	173	8	9606
AYVEANQMLGDLIK	1	0	Unmodified	1563.7967	0.79667909	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.67	0.471		1	2			21.966	21.966	2	1.9082E-13	14716	DP1063-2	202.03	157.28			1.3638	1.141	NaN	1	0	Median	100790000	39009000	61782000	443	154	416	866;867;868	1968;1969;1970;1971;1972;1973	1971		6	9606
AYVWDNNK	1	0	Unmodified	1008.4665	0.46649483	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.97	16.97	2	0.0088822	6628	DP1063-1	114.78	88.889			1.3398	1.1452	NaN	1	0	Median	32911000	13906000	19005000	444	460	417	869	1974;1975;1976;1977	1976		4	9606
AYVWDNNKDLAEWLEK	2	0	Unmodified	1992.9581	0.95814177	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	1.07	3	2	1	1		21.981	21.981	2;3	8.8242E-09	14721	DP1063-2	168.31	141.66			1.1622	1.0691	21.377	5	0	Median	98045000	41561000	56484000	445	460	418	870;871;872;873;874;875;876	1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993;1994;1995	1988		18	9606
CADFGMAADK	1	0	Oxidation (M)	1100.4267	0.4266802	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			14.55	14.55	2	0.0067397	6127	DP1063-3	81.338	71.75			2.1161	1.6992	NaN	1	0	Median	52874000	19831000	33044000	446	111	419	877	1996;1997;1998;1999;2000	1998	97	5	9606
CADFGMAADK	1	0	Unmodified	1084.4318	0.43176558	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.377	16.377	2	0.011346	8719	DP1063-3	82.287	57.364			1.3639	1.0952	NaN	1	0	Median	20364000	9583400	10781000	447	111	419	878	2001;2002;2003	2002		3	9606
CADFGMAADKNK	2	0	Oxidation (M)	1342.5646	0.56457067	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3	0			1			13.271	13.271	3	0.006713	4676	DP1063-3	62.088	56.429			1.4757	1.324	NaN	1	0	Median	14219000	6212400	8007100	448	111	420	879	2004;2005	2005	97	2	9606
CAGCTNPISGLGGTK	1	0	Unmodified	1491.681	0.68099741	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				4		17.121	17.121	2	0.0016951	9350	DP1063-4	110.66	75.889			NaN	NaN	NaN	0	0	Median	0	0	0	449	485	421	880;881;882;883	2006;2007;2008;2009	2009		4	9606
CAGNEDIITLR	0	1	Unmodified	1260.6132	0.61323542	157	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				1		18.283	18.283	2	0.0030997	10850	DP1063-4	114.51	59.143			NaN	NaN	NaN	0	0	Median	5407200	0	5407200	450	157	422	884	2010	2010		1	9606
CASQAGMTAYGTR	0	1	Oxidation (M)	1388.5813	0.58128336	510	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	4	0				1		13.59	13.59	2	0.0099384	4806	DP1063-4	94.767	19.823			NaN	NaN	NaN	0	0	Median	2034800	0	2034800	451	510	423	885	2011	2011	646	1	9606
CCAADDKEACFAVEGPK	2	0	Unmodified	1926.791	0.79101814	14	CON__P02769			yes	yes	0	0	1	2	0.816	2	2	2			16.296	16.296	2;3	5.2939999999999995E-46	8448	DP1063-3	269.88	229.27		+	NaN	NaN	NaN	0	0	Median	220580000	220580000	0	452	14	424	886;887;888;889;890;891	2012;2013;2014;2015;2016;2017;2018;2019;2020;2021;2022;2023	2020		12	9606
CCTESLVNR	0	1	Unmodified	1137.4907	0.49067744	14	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	3	1.41	1	1	1	1	1	14.956	14.956	2	1.143E-05	4554	DP1063-1	203.19	173.02		+	NaN	NaN	NaN	0	0	Median	383740000	383740000	0	453	14	425	892;893;894;895;896	2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036	2024		13	9606
CDSSPDSAEDVR	0	1	Unmodified	1336.5201	0.52012289	18	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	0	3.5	0.5			1	1		14.001	14.001	2	3.3727E-06	5451	DP1063-3	169.93	155.37		+	NaN	NaN	NaN	0	0	Median	18676000	18676000	0	454	18	426	897;898	2037;2038;2039;2040	2038		4	9606
CDSSPDSAEDVRK	1	1	Unmodified	1464.6151	0.61508591	18	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	1	3.33	0.471			2	1		12.927	12.927	2;3	0.00019217	4197	DP1063-3	132.86	112.08		+	NaN	NaN	NaN	0	0	Median	62991000	62991000	0	455	18	427	899;900;901	2041;2042;2043;2044;2045;2046	2041		6	9606
CEGINISGNFYR	0	1	Unmodified	1428.6456	0.64559818	269	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	5	0					2	19.251	19.251	2	1.7923E-05	12418	DP1063-5	144.77	83.004			NaN	NaN	NaN	0	0	Median	16228000	6324400	9903300	456	269	428	902;903	2047;2048;2049;2050	2048		4	9606
CELLYEGPPDDEAAMGIK	1	0	Oxidation (M)	2022.8914	0.89144369	165	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	2	0		1				19.544	19.544	2	0.019174	11492	DP1063-2	104.17	83.334			NaN	NaN	NaN	0	0	Median	0	0	0	457	165	429	904	2051	2051	205	1	9606
CFGTGAAGNR	0	1	Unmodified	1009.44	0.4399625	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					14.025	14.025	2	0.008763	3442	DP1063-1	87.181	71.8			2.0034	1.6661	NaN	1	0	Median	3102700	888640	2214000	458	420	430	905	2052;2053	2053		2	9606
CFIVGADNVGSK	1	0	Unmodified	1265.6074	0.60742176	115	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		17.718	17.718	2	0.0088641	10162	DP1063-4	88.596	72.458			1.7246	1.1937	NaN	1	0	Median	11129000	5572700	5556800	459	115	431	906	2054;2055	2055		2	9606
CIENLEELQSLR	0	1	Unmodified	1502.7399	0.73989249	512	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		20.245	20.245	2	0.0037592	13560	DP1063-4	100.88	26.993			NaN	NaN	NaN	0	0	Median	2692900	0	2692900	460	512	432	907	2056	2056		1	9606
CIPALDSLTPANEDQK	1	0	Unmodified	1770.8458	0.84581413	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.724	19.724	2	0.00062887	13278	DP1063-3	138.42	101.24			NaN	NaN	NaN	0	0	Median	0	0	0	461	151	433	908	2057	2057		1	9606
CLAAEDVVFIGPDTHAIQAMGDK	1	0	Oxidation (M)	2473.1617	0.16174531	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.087	20.087	3	0.00035825	13796	DP1063-3	72.564	57.323			0.90601	0.72752	NaN	1	0	Median	18995000	9430900	9564500	462	110	434	909	2058	2058	84	1	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	2	0	Oxidation (M)	2930.4154	0.41539382	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2.67	0.471		1	2			19.705	19.705	3;4	4.9224E-15	13153	DP1063-3	161.46	146.17			1.1654	1.0505	5.439	3	0	Plateau	122600000	55538000	67060000	463	110	435	910;911;912	2059;2060;2061;2062;2063;2064;2065;2066;2067;2068;2069	2064	84	11	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	2	0	Unmodified	2914.4205	0.4204792	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			21.331	21.331	3	1.7671E-11	15489	DP1063-3	126.86	126.86			1.2503	1.1218	NaN	1	0	Median	14132000	5451600	8680600	464	110	435	913	2070	2070		1	9606
CLHPLANETFVAK	1	0	Unmodified	1498.7602	0.76023401	476	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		17.003	17.003	3	0.014581	9144	DP1063-4	51.612	51.612			1.0033	0.69448	NaN	1	0	Median	7102700	3877900	3224700	465	476	436	914	2071	2071		1	9606
CNESLYGR	0	1	Unmodified	997.42873	0.42872911	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		14.74	14.74	2	0.0045684	6214	DP1063-4	122.74	104.01			1.0591	0.64643	NaN	1	0	Median	8573300	3356900	5216500	466	477	437	915	2072;2073;2074;2075	2072		4	9606
CNLLAEK	1	0	Unmodified	846.42694	0.4269382	18	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	0	3	0			1			15.541	15.541	2	0.02254	7535	DP1063-3	104.45	17.582		+	NaN	NaN	NaN	0	0	Median	54989000	54989000	0	467	18	438	916	2076;2077	2077		2	9606
CNNVLYIR	0	1	Unmodified	1050.528	0.52804923	377	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	0	0	5	0					1	17.528	17.528	2	0.050436	10185	DP1063-5	81.784	37.389			NaN	NaN	NaN	0	0	Median	2383300	0	2383300	468	377	439	917	2078	2078		1	9606
CPEALFQPSFLGMESCGIHETTFNSIMK	1	0	2 Oxidation (M)	3262.4443	0.44432746	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	2	0	4	0				1		21.586	21.586	3	5.5289E-08	15300	DP1063-4	86.519	76.099			1.9658	1.3607	NaN	1	0	Median	30147000	8471000	21676000	469	349;409	440	918	2079;2080;2081;2082;2083	2082	434;435	5	9606
CPEALFQPSFLGMESCGIHETTFNSIMK	1	0	Oxidation (M)	3246.4494	0.44941284	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		22.355	22.355	3	8.4775E-09	16172	DP1063-4	96.723	96.723			2.7097	1.8756	NaN	1	0	Median	14113000	4375800	9737300	470	349;409	440	919	2084;2085;2086;2087	2086	434;435	4	9606
CPFTGNVSIR	0	1	Unmodified	1149.5601	0.56007764	376	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	17.452	17.452	2	1.434E-05	10008	DP1063-5	138.06	90.319			2.8007	2.0917	NaN	1	0	Median	50487000	12061000	38425000	471	376	441	920	2088;2089;2090;2091	2089		4	9606
CPPGVVPACHNSK	1	0	Unmodified	1421.6544	0.65438873	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					13.442	13.442	3	0.0081919	2793	DP1063-1	81.494	37.176			NaN	NaN	NaN	0	0	Median	1921800	0	1921800	472	303	442	921	2092	2092		1	9606
CQVFEETQIGGER	0	1	Unmodified	1551.6988	0.69875596	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			17.729	17.729	2	2.907E-08	10523	DP1063-3	181.87	181.87			5.0237	3.8075	NaN	1	0	Median	37597000	9181300	28416000	473	601	443	922	2093;2094;2095	2094		3	9606
CSGPGLER	0	1	Unmodified	874.3967	0.3967007	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					13.743	13.743	2	0.0029034	3137	DP1063-1	125.81	84.512			10.716	8.4434	NaN	1	0	Median	7072100	555140	6517000	474	190	444	923	2096;2097	2096		2	9606
CTGGEVGATSALAPK	1	0	Unmodified	1417.6871	0.68712864	231	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	16.026	16.026	2	0.0031677	8324	DP1063-5	95.477	76.697			1.4413	1.22	NaN	1	0	Median	12724000	5844100	6879700	475	231	445	924	2098;2099	2099		2	9606
CTVFHGAQVEDAFR	0	1	Unmodified	1635.7464	0.74637486	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					18.098	18.098	3	7.7358E-05	7967	DP1063-1	156.6	137.77			2.8909	2.2907	NaN	1	0	Median	11939000	3668600	8270000	476	303	446	925	2100;2101	2101		2	9606
CVFALREENK	1	1	Unmodified	1264.6234	0.62340617	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.243	16.243	2;3	1.1352000000000001E-20	5917	DP1063-1	207.29	186.32			1.3911	1.2971	1.5364	2	0	Median	42844000	16756000	26088000	477	460	447	926;927	2102;2103;2104;2105	2104		4	9606
DAEAWFNEK	1	0	Unmodified	1108.4825	0.48253882	19	CON__P13645;P13645;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Y8;CON__Q7Z3Z0	KRT10;KRT28;KRT27;KRT25	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25	yes	no	0	0	0	2.5	1.12	1	1	1	1		19.521	19.521	2	0.00075685	11486	DP1063-2	127.46	93.665		+	NaN	NaN	NaN	0	0	Median	78259000	78259000	0	478	19	448	928;929;930;931	2106;2107;2108;2109;2110;2111;2112;2113	2109		8	9606
DAEDVDLNHYR	0	1	Unmodified	1345.5899	0.58985744	512	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		16.405	16.405	2	5.033E-11	8480	DP1063-4	200.54	98.817			NaN	NaN	NaN	0	0	Median	7614100	0	7614100	479	512	449	932	2114;2115	2115		2	9606
DAFLGSFLYEYSR	0	1	Unmodified	1566.7355	0.73545904	14	CON__P02769			yes	yes	0	0	0	2.44	0.933	1	10	3	1	1	25.462	25.462	2	4.6619E-58	19226	DP1063-3	284.62	251.43		+	NaN	NaN	NaN	0	0	Median	934560000	934560000	0	480	14	450	933;934;935;936;937;938;939;940;941;942;943;944;945;946;947;948	2116;2117;2118;2119;2120;2121;2122;2123;2124;2125;2126;2127;2128;2129;2130;2131;2132;2133;2134;2135;2136;2137	2131		22	9606
DAGEGGLSLAIEGPSK	1	0	Unmodified	1499.7468	0.74675201	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					19.815	19.815	2	0.00044923	10104	DP1063-1	159.08	100.38			NaN	NaN	NaN	0	0	Median	4217000	0	4217000	481	190	451	949	2138;2139	2139		2	9606
DAGEGLLAVQITDPEGKPK	2	0	Unmodified	1937.0106	0.010571271	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					19.751	19.751	2	5.9899E-17	10027	DP1063-1	195.71	148.73			NaN	NaN	NaN	0	0	Median	0	0	0	482	190	452	950	2140	2140		1	9606
DAGQISGLNVLR	0	1	Unmodified	1241.6728	0.67279921	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.884	19.884	2	1.7853E-08	13490	DP1063-3	179.81	142.26			1.8581	1.4587	NaN	1	0	Median	59324000	24541000	34783000	483	263	453	951	2141;2142;2143;2144	2141		4	9606
DAGTIAGLNVLR	0	1	Unmodified	1198.667	0.66698555	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			20.66	20.66	2	0.00027104	14542	DP1063-3	151.44	98.959			3.6178	3.0248	NaN	1	0	Median	134450000	26490000	107960000	484	153	454	952	2145;2146;2147;2148;2149;2150	2147		6	9606
DAGVIAGLNVLR	0	1	Unmodified	1196.6877	0.68772099	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.4	0.49			3	2		21.535	21.535	2	0.00091887	15677	DP1063-3	126.24	75.05			NaN	NaN	NaN	0	0	Median	67314000	67314000	0	485	149	455	953;954;955;956;957	2151;2152;2153;2154;2155;2156	2151		6	9606
DAHNALLDIQSSGR	0	1	Unmodified	1495.7379	0.73791866	5	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	2	0		1				17.854	17.854	2	5.0797E-05	9154	DP1063-2	133.05	92.896			NaN	NaN	NaN	0	0	Median	6947700	0	6947700	486	5	456	958	2157;2158	2157		2	9606
DAHQSLLATR	0	1	Unmodified	1110.5782	0.57817054	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.471	1	2				15.231	15.231	2;3	2.1454E-07	5616	DP1063-2	167.12	118.02			1.4681	1.4066	NaN	1	0	Median	719670000	285980000	433690000	487	154	457	959;960;961	2159;2160;2161;2162;2163;2164;2165	2164		7	9606
DAIPENLPPLTADFAEDK	1	0	Unmodified	1954.9524	0.95238769	14	CON__P02769			yes	yes	0	0	0	2	1	1		1			22.325	22.325	2	0.00048365	16697	DP1063-3	139.77	99.756		+	NaN	NaN	NaN	0	0	Median	17270000	17270000	0	488	14	458	962;963	2166;2167;2168;2169	2169		4	9606
DAIPENLPPLTADFAEDKDVCK	2	0	Unmodified	2457.1734	0.17335586	14	CON__P02769			yes	yes	0	0	1	2	0.816	1	1	1			21.069	21.069	2;3	0.0073287	15073	DP1063-3	125.5	84.558		+	NaN	NaN	NaN	0	0	Median	54258000	54258000	0	489	14	459	964;965;966	2170;2171;2172;2173;2174	2174		5	9606
DALSDLALHFLNK	1	0	Unmodified	1455.7722	0.7721789	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3.33	0.471			2	1		24.006	24.006	2;3	5.5027E-13	18831	DP1063-3	206.73	206.73			3.8019	3.0529	1.2998	2	0	Median	61130000	12010000	49120000	490	320	460	967;968;969	2175;2176;2177;2178;2179;2180;2181;2182;2183	2175		9	9606
DANGNSFATR	0	1	Unmodified	1051.4683	0.46828574	383	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	4	0				1		14.342	14.342	2	0.001609	5750	DP1063-4	109.44	98.573			1.7533	1.2054	NaN	1	0	Median	4587800	2401900	2185800	491	383	461	970	2184	2184		1	9606
DAPQDFHPDR	0	1	Unmodified	1196.521	0.52104959	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					14.664	14.664	2	0.01887	4138	DP1063-1	87.149	70.609			NaN	NaN	NaN	0	0	Median	3396300	0	3396300	492	190	462	971	2185;2186	2186		2	9606
DAQGQPGLER	0	1	Unmodified	1069.5152	0.51523593	50	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	1	0	1					14.29	14.29	2	0.00050455	3725	DP1063-1	120.99	75.309			4.0914	3.613	NaN	1	0	Median	1490700	277110	1213600	493	50	463	972	2187;2188	2187		2	9606
DASNWSTDKLK	2	0	Unmodified	1263.6095	0.60953025	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	1	4	0				1		16.063	16.063	2	0.043086	8015	DP1063-4	117.53	67.811			NaN	NaN	NaN	0	0	Median	5443700	0	5443700	494	86	464	973	2189	2189		1	9606
DATNVGDEGGFAPNILENK	1	0	Unmodified	1959.9174	0.91739917	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3.5	0.5			1	1		20.665	20.665	2	4.825E-45	14079	DP1063-4	251.91	227.55			2.0882	1.4454	NaN	1	0	Median	35412000	8141200	27271000	495	123	465	974;975	2190;2191;2192;2193;2194	2194		5	9606
DAVTYTEHAK	1	0	Unmodified	1133.5353	0.53530267	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					2	13.967	13.967	2	1.4958E-14	5400	DP1063-5	204.27	204.27			1.3955	1.1813	20.656	2	0	Median	353690000	131180000	222510000	496	386	466	976;977	2195;2196;2197;2198;2199;2200	2197		5	9606
DAVTYTEHAKR	1	1	Unmodified	1289.6364	0.6364137	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	13.042	13.042	3	3.438E-06	4833	DP1063-5	130.41	130.41			1.6809	1.4331	NaN	1	0	Median	9213300	3454700	5758600	497	386	467	978	2201;2202;2203;2204;2205	2205		5	9606
DAYSGGAVNLYHVR	0	1	Unmodified	1520.7372	0.73719038	225	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	5	0					1	17.642	17.642	3	0.0030285	10317	DP1063-5	91.62	66.172			NaN	NaN	NaN	0	0	Median	6684200	0	6684200	498	225	468	979	2206	2206		1	9606
DDDIAALVVDNGSGMCK	1	0	Acetyl (Protein N-term)	1820.7921	0.792064	349	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	0	0	4	0				1		23.643	23.643	2	6.9942E-22	17634	DP1063-4	222.73	198.65			2.6934	1.8643	NaN	1	0	Median	8484800	2799600	5685200	499	349	469	980	2207;2208;2209;2210;2211	2208		5	9606
DDDIAALVVDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1836.787	0.78697862	349	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	1	0	4	0				1		22.786	22.786	2	7.2606E-05	16611	DP1063-4	166.62	135.19			NaN	NaN	NaN	0	0	Median	28508000	0	28508000	500	349	469	981	2212;2213	2213	436	2	9606
DDEVQVVR	0	1	Unmodified	958.47197	0.47197413	356	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	15.398	15.398	2	0.014927	7573	DP1063-5	102.72	66.839			1.5487	1.1567	NaN	1	0	Median	11776000	4348000	7428400	501	356	470	982	2214;2215	2215		2	9606
DDFAYCLNCFCDLYAK	1	0	Unmodified	2073.8271	0.8270693	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		23.59	23.59	2	0.0018253	17635	DP1063-4	116.01	115.73			1.0089	0.69836	NaN	1	0	Median	4192100	2287700	1904400	502	485	471	983	2216;2217;2218	2217		3	9606
DDGLFSGDPNWFPK	1	0	Unmodified	1593.71	0.70997257	261	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	23.567	23.567	2	0.008394	17539	DP1063-5	93.442	51.231			NaN	NaN	NaN	0	0	Median	5391200	0	5391200	503	261	472	984	2219;2220	2219		2	9606
DDKHGSYEDAVHSGALND	1	0	Unmodified	1928.8137	0.81366238	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	1	3	0			1			15.738	15.738	2	0.0075693	7839	DP1063-3	134.37	105.03			NaN	NaN	NaN	0	0	Median	8193100	0	8193100	504	179	473	985	2221;2222	2221		2	9606
DDPHACYSTVFDK	1	0	Unmodified	1553.6457	0.64565776	14	CON__P02769			yes	yes	0	0	0	2.5	0.957	1	2	2	1		17.462	17.462	2;3	4.5347E-05	10061	DP1063-3	158.06	135.05		+	NaN	NaN	NaN	0	0	Median	571430000	571430000	0	505	14	474	986;987;988;989;990;991	2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234	2230		12	9606
DDPHACYSTVFDKLK	2	0	Unmodified	1794.8247	0.82468476	14	CON__P02769			yes	yes	0	0	1	2	0.816	1	1	1			18.539	18.539	3	0.0002442	11559	DP1063-3	125.36	110.24		+	NaN	NaN	NaN	0	0	Median	82508000	82508000	0	506	14	475	992;993;994	2235;2236;2237;2238	2237		4	9606
DDSPDLPK	1	0	Unmodified	885.40798	0.40797689	14	CON__P02769			yes	yes	0	0	0	1	0	1					15.415	15.415	2	0.030805	5017	DP1063-1	89.142	52.441		+	NaN	NaN	NaN	0	0	Median	6015100	6015100	0	507	14	476	995	2239	2239		1	9606
DEDPYCVACFGELFAPK	1	0	Unmodified	2016.8597	0.85974963	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		24.382	24.382	2	0.00098288	18531	DP1063-4	112.44	98.084			1.1638	0.80558	NaN	1	0	Median	4351300	1729600	2621700	508	477	477	996	2240;2241;2242	2242		3	9606
DEIIWLLR	0	1	Unmodified	1056.5968	0.59678072	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				23.832	23.832	2	0.0433	17107	DP1063-2	77.674	51.735			1.828	1.3966	NaN	1	0	Median	6128100	2215600	3912500	509	666	478	997	2243;2244	2243		2	9606
DEILPTTPISEQK	1	0	Unmodified	1469.7613	0.76133944	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		18.84	18.84	2	0.0041464	11622	DP1063-4	96.015	55.663			1.7729	1.2272	NaN	1	0	Median	19533000	6419700	13114000	510	200	479	998	2245;2246	2245		2	9606
DEPIHILNVAIK	1	0	Unmodified	1360.7715	0.77145062	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.12	0.331	14	2				23.491	23.491	2;3	8.6276E-20	10638	DP1063-1	188.87	135.38			1.1295	0.96402	13.884	6	0	Median	850330000	382120000	468210000	511	460	480	999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011;1012;1013;1014	2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278;2279;2280;2281	2250		35	9606
DEPSPLAQPLELNQHSR	0	1	Unmodified	1929.9545	0.95445338	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.597	18.597	3	0.0061322	8650	DP1063-1	102.29	78.303			NaN	NaN	NaN	0	0	Median	4350500	4350500	0	512	460	481	1015	2282;2283	2283		2	9606
DETEFYLGK	1	0	Unmodified	1100.5026	0.50260556	180	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	5	0					1	19.163	19.163	2	0.015419	12297	DP1063-5	85.064	46.258			1.5891	1.3452	NaN	1	0	Median	9014000	3066900	5947100	513	180	482	1016	2284;2285;2286;2287	2284		4	9606
DETNYGIPQR	0	1	Unmodified	1191.552	0.55201537	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		16.704	16.704	2	0.0022749	8747	DP1063-4	105.14	72.781			1.8823	1.2631	NaN	1	0	Median	18053000	6910100	11143000	514	408	483	1017	2288;2289;2290	2290		3	9606
DFFNYLPLSSQDPAPVR	0	1	Unmodified	1964.9632	0.96322715	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			4	2		23.616	23.616	2;3	5.0637E-10	18369	DP1063-3	174.59	174.59			0.94835	0.69462	34.45	2	0	Median	197890000	25178000	172710000	515	111	484	1018;1019;1020;1021;1022;1023	2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304	2294		14	9606
DFFNYLPLSSQDPAPVRECHDPSDR	0	2	Unmodified	2961.3352	0.33516966	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			21.122	21.122	3	0.029418	15181	DP1063-3	60.133	38.01			NaN	NaN	NaN	0	0	Median	6515500	0	6515500	516	111	485	1024	2305	2305		1	9606
DFHVDEQTTVK	1	0	Unmodified	1317.6201	0.62009493	21	CON__P34955			yes	yes	0	0	0	3	0			1			15.899	15.899	2	1.5361E-06	8049	DP1063-3	178.84	131.02		+	NaN	NaN	NaN	0	0	Median	30062000	30062000	0	517	21	486	1025	2306;2307	2306		2	
DFLAGGIAAAISK	1	0	Unmodified	1232.6765	0.6764876	159	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	4	0				1		22.226	22.226	2	0.018623	16024	DP1063-4	77.062	20.629			2.1379	1.4798	NaN	1	0	Median	7731400	2847200	4884200	518	159	487	1026	2308;2309	2309		2	9606
DFLAGGVAAAISK	1	0	Unmodified	1218.6608	0.66083754	108	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	2.5	1.5	1			1		21.111	21.111	2	0.0019305	14587	DP1063-4	102.4	70.08			1.856	1.3641	5.6926	2	0	Median	38455000	13200000	25255000	519	108	488	1027;1028	2310;2311;2312;2313;2314	2313		5	9606
DFTATFGPLDSLNTR	0	1	Unmodified	1653.7999	0.79985021	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.13	0.542		42	1	1	1	30.879	30.879	2	1.9347999999999998E-39	16716	DP1063-4	245.13	207.57			1.3899	1.1044	9.2934	10	0	Median	554680000	234870000	319810000	520	154	489	1029;1030;1031;1032;1033;1034;1035;1036;1037;1038;1039;1040;1041;1042;1043;1044;1045;1046;1047;1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058;1059;1060;1061;1062;1063;1064;1065;1066;1067;1068;1069;1070;1071;1072;1073	2315;2316;2317;2318;2319;2320;2321;2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345;2346;2347;2348;2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388;2389;2390	2389		76	9606
DFTVASPAEFVTR	0	1	Unmodified	1438.7092	0.70924429	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1.32	0.929	27	1	1	1	1	28.945	28.945	2	2.8023E-08	15597	DP1063-3	182.28	98.785			1.1349	0.9357	12.034	15	0	Median	641410000	290770000	350630000	521	43;460	490	1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088;1089;1090;1091;1092;1093;1094;1095;1096;1097;1098;1099;1100;1101;1102;1103;1104	2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403;2404;2405;2406;2407;2408;2409;2410;2411;2412;2413;2414;2415;2416;2417;2418;2419;2420;2421;2422;2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444;2445;2446;2447;2448;2449;2450;2451;2452;2453;2454;2455;2456;2457;2458;2459;2460	2452		70	9606
DFTVSAMHGDMDQKER	1	1	2 Oxidation (M)	1897.7935	0.79346098	350	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	2	1	4	0				1		14.168	14.168	3	0.042981	5540	DP1063-4	63.754	43.671			NaN	NaN	NaN	0	0	Median	3197800	0	3197800	522	350	491	1105	2461	2461	443;444	1	9606
DFYVAFQDLPTR	0	1	Unmodified	1470.7143	0.71432967	489	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	2	0		1				22.536	22.536	2	0.0032947	15412	DP1063-2	103.22	64.438			NaN	NaN	NaN	0	0	Median	3049500	0	3049500	523	489	492	1106	2462	2462		1	9606
DGGERISMPLDFK	1	1	Unmodified	1463.7079	0.70786408	518	Q16584	MAP3K11	Mitogen-activated protein kinase kinase kinase 11	yes	yes	0	0	1	3	0			1			23.412	23.412	2	0.00092478	18107	DP1063-3	152.69	113.07			NaN	NaN	NaN	0	0	Median	14113000	14113000	0	524	518	493	1107	2463;2464	2464		2	9606
DGNASGTTLLEALDCILPPTRPTDKPLR	1	2	Unmodified	3020.5601	0.56008422	412	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	2	4	0				2		23.329	23.329	3;4	4.5637E-12	17277	DP1063-4	131.59	131.59			1.3969	1.6467	9.7558	2	0	Median	20198000	7511800	12686000	525	412	494	1108;1109	2465;2466;2467;2468;2469;2470	2465		6	9606
DGPLNMILDDGGDLTNLIHTK	1	0	Oxidation (M)	2267.1104	0.11036167	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	1	0	4	0				1		23.699	23.699	3	0.0065568	17766	DP1063-4	79.341	54.616			NaN	NaN	NaN	0	0	Median	3155900	0	3155900	526	201	495	1110	2471;2472;2473	2472	259	3	9606
DGQVINETSQHHDDLE	0	0	Unmodified	1835.7922	0.79219865	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3.5	0.5			1	1		15.647	15.647	2	0.0017549	7661	DP1063-3	148.28	110.72			NaN	NaN	NaN	0	0	Median	0	0	0	527	136	496	1111;1112	2474;2475;2476;2477	2474		4	9606
DGSCGVAYVVQEPGDYEVSVK	1	0	Unmodified	2257.0209	0.020877961	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					20.284	20.284	2	6.775999999999999E-21	10693	DP1063-1	213.67	173.19			NaN	NaN	NaN	0	0	Median	3758200	0	3758200	528	190	497	1113	2478;2479;2480	2479		3	9606
DHAVVVGVYRPPPK	1	1	Unmodified	1532.8463	0.8463469	193	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		15.348	15.348	3	0.0010944	7087	DP1063-4	98.902	98.902			1.379	1.3408	NaN	1	0	Median	10231000	4530600	5700200	529	193	498	1114	2481;2482;2483;2484	2482		4	9606
DICNDVLSLLEK	1	0	Unmodified	1417.7123	0.71228076	404	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4	0				1		25.02	25.02	2	0.033859	19222	DP1063-4	78.653	41.144			NaN	NaN	NaN	0	0	Median	1310100	0	1310100	530	404	499	1115	2485	2485		1	9606
DIDEVSSLLR	0	1	Unmodified	1145.5928	0.59281755	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			21.25	21.25	2	1.0994E-06	15335	DP1063-3	156.75	122.96			3.93	2.9173	NaN	1	0	Median	28703000	6126300	22577000	531	319	500	1116	2486;2487;2488;2489;2490	2489		5	9606
DIDIHEVR	0	1	Unmodified	995.50361	0.50360861	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		2				15.927	15.927	2	0.01488	6578	DP1063-2	98.997	71.114			NaN	NaN	NaN	0	0	Median	35284000	0	35284000	532	429	501	1117;1118	2491;2492;2493	2491		3	9606
DIEAQTQKPEPPESAEK	2	0	Unmodified	1895.9113	0.91125116	535	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	1	2	0		1				14.869	14.869	3	0.0002817	5173	DP1063-2	124.2	53.936			NaN	NaN	NaN	0	0	Median	7273600	0	7273600	533	535	502	1119	2494;2495	2494		2	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	1	0	Unmodified	3263.5066	0.5065879	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.6	1.02	1	1	2	1		22.579	22.579	3;4	3.8473E-32	16974	DP1063-3	218.93	194.78		+	NaN	NaN	NaN	0	0	Median	200900000	200900000	0	534	251	503	1120;1121;1122;1123;1124	2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507	2501		12	9606
DIICQIAYAR	0	1	Unmodified	1221.6176	0.61759251	288	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		20.054	20.054	2	0.00042435	13282	DP1063-4	122.52	64.286			2.0137	1.3631	NaN	1	0	Median	19324000	6744000	12580000	535	288	504	1125	2508;2509;2510;2511	2511		4	9606
DIIVIGNDITYR	0	1	Unmodified	1390.7456	0.7456298	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.05	0.213	20	1				27.531	27.531	2	1.7476E-08	11903	DP1063-1	180.09	140.54			1.3794	1.2439	10.913	2	0	Median	380030000	201560000	178470000	536	460	505	1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145;1146	2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528;2529;2530;2531;2532;2533;2534;2535	2512		24	9606
DINAYNCEEPTEK	1	0	Unmodified	1581.6617	0.66170175	229	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	5	0					1	16.129	16.129	2	0.022297	8478	DP1063-5	80.979	46.773			NaN	NaN	NaN	0	0	Median	0	0	0	537	229	506	1147	2536	2536		1	9606
DINWDSSQWQPLIQDR	0	1	Unmodified	1999.9388	0.93880331	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				23.07	23.07	2	0.00056449	16133	DP1063-2	126.1	94.458			NaN	NaN	NaN	0	0	Median	3226000	0	3226000	538	569	507	1148	2537;2538	2537		2	9606
DIPGLTDTTVPR	0	1	Unmodified	1283.6721	0.67213051	385	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		19.469	19.469	2	0.002718	12487	DP1063-4	109.83	35.665			NaN	NaN	NaN	0	0	Median	10028000	0	10028000	539	385	508	1149	2539;2540	2540		2	9606
DIQENDEEAVQVK	1	0	Unmodified	1515.7053	0.70528113	36	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	4	0				2		16.32	16.32	2	0.00076912	8375	DP1063-4	112.83	55.918			NaN	NaN	NaN	0	0	Median	0	0	0	540	36	509	1150;1151	2541;2542	2542		2	9606
DIQGPGNPQCFSLR	0	1	Unmodified	1587.7464	0.74637486	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				19.2	19.2	2	0.021583	11063	DP1063-2	83.226	43.353			NaN	NaN	NaN	0	0	Median	7062200	0	7062200	541	82	510	1152	2543	2543		1	9606
DISLSDYK	1	0	Unmodified	939.45493	0.45492709	446	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	18.024	18.024	2	0.056333	10763	DP1063-5	71.877	8.5712			2.7593	2.3358	NaN	1	0	Median	22155000	7983800	14171000	542	446	511	1153	2544	2544		1	9606
DISTNYYASQK	1	0	Unmodified	1288.5935	0.59354583	169	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	0		1				16.578	16.578	2	0.003619	7475	DP1063-2	108.57	50.711			NaN	NaN	NaN	0	0	Median	15620000	0	15620000	543	169	512	1154	2545;2546	2545		2	9606
DISTTLNADEAVAR	0	1	Unmodified	1474.7264	0.72635092	566	Q92598	HSPH1	Heat shock protein 105 kDa	no	no	0	0	0	2	0		1				18.857	18.857	2	0.00029862	10597	DP1063-2	130.01	84.005			NaN	NaN	NaN	0	0	Median	11548000	0	11548000	544	566	513	1155	2547;2548	2547		2	9606
DITYFIQQLLR	0	1	Unmodified	1408.7715	0.77145062	353	P61158;Q9C0K3;Q9P1U1	ACTR3;ACTR3C;ACTR3B	Actin-related protein 3;Actin-related protein 3C;Actin-related protein 3B	yes	no	0	0	0	4	0				1		27.588	27.588	2	0.0041482	21734	DP1063-4	102.51	56.517			NaN	NaN	NaN	0	0	Median	1670400	0	1670400	545	353	514	1156	2549;2550;2551	2551		3	9606
DIVHKPGPIVLTVAK	2	0	Unmodified	1585.9556	0.955563	46	O14641	DVL2	Segment polarity protein dishevelled homolog DVL-2	yes	yes	0	0	1	2	0		1				17.413	17.413	3	0.033514	8607	DP1063-2	71.08	52.005			NaN	NaN	NaN	0	0	Median	12502000	0	12502000	546	46	515	1157	2552	2552		1	9606
DKFEEDRIYR	1	2	Unmodified	1369.6626	0.66262845	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					15.383	15.383	2	0.00056317	4999	DP1063-1	109.44	109.44			1.2169	1.2402	NaN	1	0	Median	17230000	8040000	9189900	547	460	516	1158	2553;2554;2555;2556	2555		4	9606
DKFNECGHVLYADIK	2	0	Unmodified	1807.8563	0.85631924	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	2.5	0.5		1	1			17.401	17.401	3	0.001308	8541	DP1063-2	97.073	58.069			1.0518	0.97375	47.442	2	0	Median	49183000	17151000	32032000	548	323	517	1159;1160	2557;2558;2559	2557		3	9606
DKPDNFQLFQSPHGK	2	0	Unmodified	1756.8533	0.85328277	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	1	2	0		1				17.338	17.338	3	0.0016115	8441	DP1063-2	105.53	66.511		+	NaN	NaN	NaN	0	0	Median	9630100	9630100	0	549	23	518	1161	2560	2560		1	
DKPHVNVGTIGHVDHGK	2	0	Unmodified	1808.9282	0.92817905	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		13.823	13.823	4	0.030923	5089	DP1063-4	49.425	32.539			1.6295	1.6923	NaN	1	0	Median	8543500	2604500	5939000	550	306	519	1162	2561	2561		1	9606
DLADELALVDVIEDK	1	0	Unmodified	1656.8458	0.84579735	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		25.382	25.382	2	3.7759E-05	19595	DP1063-4	164.48	164.48			2.1485	1.4872	NaN	1	0	Median	5987500	2029000	3958500	551	91	520	1163	2562;2563	2562		2	9606
DLAEWLEK	1	0	Unmodified	1002.5022	0.50221163	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				21.967	21.967	1;2	0.0048752	12701	DP1063-1	122.18	53			1.3677	1.1382	9.7985	3	0	Median	38679000	16353000	22325000	552	460	521	1164;1165;1166	2564;2565;2566;2567;2568;2569	2564		5	9606
DLAILQCHGELDPMVPVR	0	1	Oxidation (M)	2078.0289	0.028880648	83	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	1	0	5	0					1	20.433	20.433	3	0.0047849	13924	DP1063-5	90.714	44.841			NaN	NaN	NaN	0	0	Median	7841800	0	7841800	553	83	522	1167	2570;2571	2570	60	2	9606
DLEEDHACIPIKK	2	0	Unmodified	1566.7712	0.77119262	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	2	0		1				15.768	15.768	3	0.0033548	6429	DP1063-2	71.085	43.409			1.9267	1.8406	NaN	1	0	Median	18944000	5052900	13891000	554	165	523	1168	2572;2573	2573		2	9606
DLEGSDIDTR	0	1	Unmodified	1119.5044	0.50439647	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				16.152	16.152	2	0.0058728	7017	DP1063-2	93.178	6.3451			1.9224	1.399	NaN	1	0	Median	12923000	4597900	8325200	555	336	524	1169	2574;2575;2576	2576		3	9606
DLEKPFLLPVEAVYSVPGR	1	1	Unmodified	2128.1568	0.15684158	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		23.12	23.12	3	0.00038179	17016	DP1063-4	115.63	100.7			NaN	NaN	NaN	0	0	Median	5628100	0	5628100	556	306	525	1170	2577;2578	2578		2	9606
DLFDPIIEDR	0	1	Unmodified	1231.6085	0.60846762	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		22.497	22.497	2	0.0069679	16326	DP1063-4	90.906	60.651			1.8242	1.3428	NaN	1	0	Median	3203400	946140	2257200	557	162	526	1171	2579;2580;2581	2580		3	9606
DLFEDELVPLFEK	1	0	Unmodified	1592.7974	0.7973906	64	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	3	0			1			25.618	25.618	2	4.4405E-05	20733	DP1063-3	138.25	93.086			NaN	NaN	NaN	0	0	Median	2150300	0	2150300	558	64	527	1172	2582;2583	2583		2	9606
DLGEEHFK	1	0	Unmodified	973.45051	0.45051041	14	CON__P02769			yes	yes	0	0	0	3	0.816		1	1	1		15.131	15.131	2	0.0083326	6962	DP1063-3	107.9	71.71		+	NaN	NaN	NaN	0	0	Median	276030000	276030000	0	559	14	528	1173;1174;1175	2584;2585;2586;2587	2586		4	9606
DLHDANTDLIGR	0	1	Unmodified	1338.6528	0.65279205	332	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	1	0	1					17.022	17.022	2	0.00036421	6702	DP1063-1	147.62	147.62			1.7619	1.3795	NaN	1	0	Median	8076600	2419400	5657200	560	332	529	1176	2588;2589	2589		2	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	1	0	2 Oxidation (M)	4299.6572	0.65716542	273	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	2	0	4	0				1		17.086	17.086	3	0.0018634	9289	DP1063-4	55.777	51.015			NaN	NaN	NaN	0	0	Median	3442200	0	3442200	561	273	530	1177	2590	2590	325;326	1	9606
DLLHPSPEEEKRK	2	1	Unmodified	1576.8209	0.82092001	276	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	2	5	0					1	14.073	14.073	3	0.0064681	5967	DP1063-5	101.56	77.28			NaN	NaN	NaN	0	0	Median	11409000	0	11409000	562	276	531	1178	2591;2592	2592		2	9606
DLNYCFSGMSDHR	0	1	Oxidation (M)	1616.6348	0.6347755	237	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	1	0	3	0			1			17.157	17.157	2	0.040932	9752	DP1063-3	55.98	47.882			1.3425	0.97714	NaN	1	0	Median	13296000	6675400	6620700	563	237	532	1179	2593	2593	279	1	9606
DLNYCFSGMSDHR	0	1	Unmodified	1600.6399	0.63986087	237	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3	0			1			18.466	18.466	2	0.0071528	11580	DP1063-3	94.363	70.985			NaN	NaN	NaN	0	0	Median	3669600	0	3669600	564	237	532	1180	2594	2594		1	9606
DLPEHAVLK	1	0	Unmodified	1020.5604	0.56039521	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				15.82	15.82	2	0.025402	6465	DP1063-2	76.774	32.379			2.5239	2.1115	NaN	1	0	Median	74577000	19962000	54614000	565	429	533	1181	2595	2595		1	9606
DLPLLLFR	0	1	Unmodified	985.59605	0.59605244	57	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			24.382	24.382	2	0.020057	19374	DP1063-3	95.793	58.699			NaN	NaN	NaN	0	0	Median	4481000	4481000	0	566	57	534	1182	2596	2596		1	9606
DLQMVNISLR	0	1	Oxidation (M)	1203.6282	0.6281572	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	0	4	0				1		19.256	19.256	2	0.0043043	12264	DP1063-4	89.08	46.792			1.4915	0.96068	NaN	1	0	Median	13094000	5766800	7327700	567	598	535	1183	2597;2598;2599;2600;2601	2600	726	5	9606
DLQNVNITLR	0	1	Unmodified	1184.6513	0.65133548	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		19.198	19.198	2	0.0011961	12107	DP1063-4	112.11	75.66			1.7917	1.1516	NaN	1	0	Median	12880000	4388900	8491400	568	249	536	1184	2602;2603	2602		2	9606
DLQSNVEHLTEK	1	0	Unmodified	1411.6943	0.69432251	433	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	2	0		1				18.058	18.058	2	0.0056584	9462	DP1063-2	93.839	51.649			0.76014	0.63595	NaN	1	0	Median	21834000	12256000	9578300	569	433	537	1185	2604	2604		1	9606
DLSAAGIGLLAAATQSLSMPASLGR	0	1	Oxidation (M)	2386.2526	0.25260923	281	P43243	MATR3	Matrin-3	yes	yes	0	1	0	2	0		1				26.574	26.574	2	0.023644	20220	DP1063-2	87.388	40.907			NaN	NaN	NaN	0	0	Median	0	0	0	570	281	538	1186	2605	2605	337	1	9606
DLSHIGDAVVISCAK	1	0	Unmodified	1583.7977	0.79774172	157	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				1		19.101	19.101	2	1.0117E-06	12026	DP1063-4	186.46	144.76			NaN	NaN	NaN	0	0	Median	5906500	0	5906500	571	157	539	1187	2606;2607	2606		2	9606
DLSYCLSGMYDHR	0	1	Oxidation (M)	1631.6708	0.67082665	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				2		17.991	17.991	2;3	0.0035709	10467	DP1063-4	105.86	82.012			1.7958	1.0986	NaN	1	0	Median	12503000	2906800	9596100	572	327	540	1188;1189	2608;2609;2610;2611	2611	415	4	9606
DLTDYLMK	1	0	Oxidation (M)	1013.4739	0.47394797	349;409;411;528	P60709;P63261;P68133;P68032;P63267;P62736;Q562R1	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	1	0	4	0				1		19.806	19.806	2	0.032564	12910	DP1063-4	70.525	42.102			3.0908	2.1393	NaN	1	0	Median	76039000	17901000	58138000	573	349;409;411;528	541	1190	2612	2612	437	1	9606
DLTDYLMK	1	0	Unmodified	997.47903	0.47903335	349;409;411;528	P60709;P63261;P68133;P68032;P63267;P62736;Q562R1	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	4	0				1		21.472	21.472	2	0.020015	15038	DP1063-4	95.352	53.7			3.0396	2.1039	NaN	1	0	Median	16792000	4065800	12726000	574	349;409;411;528	541	1191	2613;2614	2613		2	9606
DLTTAGAVTQCYR	0	1	Unmodified	1454.6824	0.68237762	436	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					3	17.716	17.716	2	5.438E-05	10396	DP1063-5	141.1	89.827			NaN	NaN	NaN	0	0	Median	9621800	9621800	0	575	436	542	1192;1193;1194	2615;2616;2617;2618	2618		4	9606
DLVEAVAHILGIR	0	1	Unmodified	1404.8089	0.80889876	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1				27.031	27.031	2	0.012318	20693	DP1063-2	85.807	48.743			NaN	NaN	NaN	0	0	Median	1384700	0	1384700	576	303	543	1195	2619;2620	2619		2	9606
DLYANTVLSGGTTMYPGIADR	0	1	Oxidation (M)	2230.0576	0.057597819	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				2		21.248	21.248	2;3	4.1521E-18	14791	DP1063-4	197.73	197.73			2.7517	2.0533	4.6179	2	0	Median	95376000	26793000	68583000	577	349;409	544	1196;1197	2621;2622;2623;2624;2625;2626;2627;2628	2624	438	8	9606
DLYANTVLSGGTTMYPGIADR	0	1	Unmodified	2214.0627	0.062683196	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		22.226	22.226	2	5.389300000000001E-35	15990	DP1063-4	233.62	202.66			2.725	1.8529	NaN	1	0	Median	20015000	5251300	14763000	578	349;409	544	1198	2629;2630;2631;2632	2630		4	9606
DMAEMQRVWKEK	2	1	Oxidation (M)	1565.733	0.73303298	501	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	1	2	3	1.41	1	1	1	1	1	18.478	18.478	2	0.0014587	11085	DP1063-4	128.86	54.481			NaN	NaN	NaN	0	0	Median	1978299999.9999998	1978299999.9999998	0	579	501	545	1199;1200;1201;1202;1203	2633;2634;2635;2636;2637;2638;2639;2640	2639	637	8	9606
DMAGLLKPTACTMLVSSLR	1	1	2 Oxidation (M)	2095.0476	0.047567179	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2.33	0.471		2	1			19.742	19.742	2;3	3.2536E-05	11723	DP1063-2	120.11	120.11			1.2727	1.1544	8.312	3	0	Median	275260000	117380000	157880000	580	154	546	1204;1205;1206	2641;2642;2643;2644;2645;2646;2647;2648;2649;2650;2651	2643	174;175	11	9606
DMAGLLKPTACTMLVSSLR	1	1	Oxidation (M)	2079.0527	0.052652557	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2.33	0.471		2	1			20.847	20.847	2;3	1.1533E-11	13282	DP1063-2	180.31	180.31			1.4546	1.3703	17.366	2	0	Median	109950000	43992000	65962000	581	154	546	1207;1208;1209	2652;2653;2654;2655;2656;2657;2658;2659;2660	2656	174;175	9	9606
DMAGLLKPTACTMLVSSLR	1	1	Unmodified	2063.0577	0.057737935	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				22.22	22.22	2;3	0.00014219	15056	DP1063-2	133.93	114.38			1.1975	1.1281	NaN	1	0	Median	16695000	7761200	8933700	582	154	546	1210;1211	2661;2662;2663	2661		3	9606
DMPIQAFLLYQEPVLGPVR	0	1	Oxidation (M)	2201.1555	0.15546137	13	CON__P02666			yes	yes	0	1	0	4	0				1		24.572	24.572	2	0.019624	18724	DP1063-4	102.64	60.542		+	NaN	NaN	NaN	0	0	Median	0	0	0	583	13	547	1212	2664	2664	12	1	
DMTLEGDDLILEIE	0	0	Oxidation (M)	1620.744	0.7440344	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	4	0				1		25.836	25.836	2	0.013734	20085	DP1063-4	91.584	62.339			NaN	NaN	NaN	0	0	Median	0	0	0	584	154	548	1213	2665	2665	176	1	9606
DMYDQVLK	1	0	Oxidation (M)	1026.4692	0.46919694	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	0	1	0	1					17.083	17.083	2	0.03136	6764	DP1063-1	71.501	42.352			1.411	1.2896	NaN	1	0	Median	99954000	42596000	57358000	585	43;460	549	1214	2666	2666	35	1	9606
DMYDQVLK	1	0	Unmodified	1010.4743	0.47428232	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					18.856	18.856	2	0.0093487	8911	DP1063-1	113.89	83.277			1.3776	1.1819	NaN	1	0	Median	34965000	13308000	21657000	586	43;460	549	1215	2667;2668	2667		2	9606
DNIQGITK	1	0	Unmodified	887.47125	0.47124585	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	14.858	14.858	2	0.015485	6920	DP1063-5	101.6	58.732			1.4171	1.1995	NaN	1	0	Median	26700000	11817000	14883000	587	386	550	1216	2669;2670;2671	2669		3	9606
DNIQGITKPAIR	1	1	Unmodified	1324.7463	0.7462985	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	16.123	16.123	3	0.00017501	8367	DP1063-5	138.99	138.99			1.5233	1.2987	NaN	1	0	Median	518050000	198140000	319910000	588	386	551	1217	2672;2673;2674;2675;2676	2672		5	9606
DNLEFFLAGIGR	0	1	Unmodified	1350.6932	0.6932003	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				24.421	24.421	2	0.00045173	15432	DP1063-1	140.16	83.906			2.189	1.8232	NaN	1	0	Median	8618800	894150	7724600	589	303	552	1218;1219	2677;2678;2679	2678		3	9606
DNNLLGR	0	1	Unmodified	800.41407	0.41406533	149;176	P17066;P0DMV9;P0DMV8	HSPA6;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			16.121	16.121	2	0.0065423	8353	DP1063-3	127.66	83.047			8.0682	6.8864	NaN	1	0	Median	175710000	20304000	155410000	590	176;149	553	1220	2680;2681;2682;2683	2683		4	9606
DNPGVVTCLDEAR	0	1	Unmodified	1444.6616	0.66164217	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				18.212	18.212	2	0.0013634	9677	DP1063-2	117.98	80.419			NaN	NaN	NaN	0	0	Median	9307500	0	9307500	591	195	554	1221	2684	2684		1	9606
DNQNFCVPCYEK	1	0	Unmodified	1572.6337	0.63371286	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		18.263	18.263	2	0.012911	10876	DP1063-4	82.171	71.584			1.0203	0.70625	NaN	1	0	Median	6615300	2530200	4085100	592	485	555	1222	2685;2686	2686		2	9606
DNSTMGYMMAK	1	0	3 Oxidation (M)	1295.4832	0.4832088	135	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	3	0	2	0		1				13.375	13.375	2	0.0029915	3332	DP1063-2	85.862	85.862			2.3998	2.0077	NaN	1	0	Median	7121800	2515500	4606300	593	135	556	1223	2687;2688;2689	2688	138;139;140	3	9606
DNTCVVEFQFMLPTSHPNR	0	1	Oxidation (M)	2307.0412	0.041236248	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	3					21.223	21.223	2;3	9.8377E-12	11589	DP1063-1	190.44	164.31			1.103	0.98244	20.308	3	0	Plateau	84541000	40662000	43879000	594	460	557	1224;1225;1226	2690;2691;2692;2693;2694;2695;2696;2697;2698;2699	2693	562	10	9606
DNTCVVEFQFMLPTSHPNR	0	1	Unmodified	2291.0463	0.046321626	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.941	21.941	2;3	4.5774E-05	12707	DP1063-1	93.371	81.911			1.1687	0.94939	28.391	2	0	Median	12158000	5888300	6269700	595	460	557	1227;1228	2700;2701;2702;2703	2703		4	9606
DPSDYVRAMREMNGK	1	2	2 Oxidation (M)	1799.7931	0.79306705	608	Q9BTD8	RBM42	RNA-binding protein 42	yes	yes	0	2	2	5	0					1	31.213	31.213	2	0.0041969	24811	DP1063-5	89.266	48.65			NaN	NaN	NaN	0	0	Median	0	0	0	596	608	558	1229	2704	2704	737;738	1	9606
DPSLPLLELQDIMTSVSGR	0	1	Oxidation (M)	2086.0616	0.061620564	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				24.677	24.677	2;3	2.8174E-05	15654	DP1063-1	115.91	115.91			1.0355	0.88227	5.4296	3	0	Plateau	53258000	26166000	27092000	597	460	559	1230;1231;1232	2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717	2711	563	13	9606
DPSLPLLELQDIMTSVSGR	0	1	Unmodified	2070.0667	0.066705942	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					27.599	27.599	2	0.00026026	18351	DP1063-1	134.06	134.06			1.3086	1.0801	NaN	1	0	Median	3401800	1286300	2115600	598	460	559	1233	2718;2719;2720;2721;2722	2721		5	9606
DPSQQELPR	0	1	Unmodified	1068.52	0.51998696	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1				15.263	15.263	2	0.0073574	5740	DP1063-2	99.442	69.969			2.6841	1.956	NaN	1	0	Median	11968000	4375600	7592800	599	303	560	1234	2723	2723		1	9606
DQHDTFFLRDPAEALQLPMDYVQR	0	2	Oxidation (M)	2920.3814	0.38139157	665	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	1	3	0			1			22.223	22.223	4	0.020154	16656	DP1063-3	40.285	28.317			0.82643	0.75559	NaN	1	0	Median	7400300	4724700	2675600	600	665	561	1235	2724	2724	772	1	9606
DQITAGNAAR	0	1	Unmodified	1015.5047	0.50467125	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	4	0				1		13.683	13.683	2	0.0044965	4923	DP1063-4	96.034	67.952			3.1337	1.9808	NaN	1	0	Median	7132800	1553800	5578900	601	194	562	1236	2725;2726	2725		2	9606
DQLQTFSEEHPVLLTEAPLNPR	0	1	Unmodified	2533.2813	0.28126682	354	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	4	0				1		21.22	21.22	3	0.0082059	14854	DP1063-4	51.526	39.093			1.1003	0.67741	NaN	1	0	Median	9195200	4300500	4894700	602	354	563	1237	2727	2727		1	9606
DQQEAALVDMVNDGVEDLR	0	1	Oxidation (M)	2131.9692	0.96917674	140	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	1	0	5	0					1	21.531	21.531	2	1.051E-16	15263	DP1063-5	193.47	149.97			3.9986	2.9864	NaN	1	0	Median	12817000	3824000	8992500	603	140	564	1238	2728	2728	148	1	9606
DQSSWQNSDASQEVGGHQER	0	1	Unmodified	2243.9428	0.94277907	614	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	2	0		1				15.675	15.675	3	0.010646	6303	DP1063-2	77.391	68.359			NaN	NaN	NaN	0	0	Median	3619900	0	3619900	604	614	565	1239	2729	2729		1	9606
DQTVIQNTDGNNNEAWAK	1	0	Unmodified	2016.9137	0.91371077	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	0	2	0		1				17.638	17.638	2	1.9302E-36	8875	DP1063-2	245.5	196.42		+	NaN	NaN	NaN	0	0	Median	7003400	7003400	0	605	23	566	1240	2730;2731	2730		2	
DQVANSAFVER	0	1	Unmodified	1234.5942	0.59421454	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				16.739	16.739	2	7.3039E-10	7615	DP1063-2	189.18	141.6			2.7651	2.2311	NaN	1	0	Median	83528000	19406000	64122000	606	132	567	1241	2732;2733;2734;2735	2732		4	9606
DQWFKCDDAIITKASIK	3	0	Unmodified	2038.0194	0.019361819	658	Q9UPT9	USP22	Ubiquitin carboxyl-terminal hydrolase 22	yes	yes	0	0	2	5	0					1	21.63	21.63	3	0.0025098	15376	DP1063-5	87.363	20.795			NaN	NaN	NaN	0	0	Median	0	0	0	607	658	568	1242	2736	2736		1	9606
DRPFFAGLVK	1	1	Unmodified	1148.6342	0.63422886	171	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	1	5	0					1	19.757	19.757	2	0.013158	13094	DP1063-5	78.098	36.65			1.7785	1.5163	NaN	1	0	Median	12766000	4660300	8105800	608	171	569	1243	2737	2737		1	9606
DRPFFPGLVK	1	1	Unmodified	1174.6499	0.64987892	196	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	1	5	0					1	19.433	19.433	2	0.0036941	12654	DP1063-5	96.331	59.774			2.09	1.7819	NaN	1	0	Median	16685000	4566900	12118000	609	196	570	1244	2738;2739;2740	2739		3	9606
DSAQTSVTQAQR	0	1	Unmodified	1290.6164	0.61640654	496	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					13.575	13.575	2	0.0016735	2960	DP1063-1	107.83	107.83			2.0889	1.9345	NaN	1	0	Median	833180	260850	572330	610	496	571	1245	2741;2742;2743;2744	2742		4	9606
DSAVAISGADSR	0	1	Unmodified	1147.5469	0.54692999	544	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	0	1					15.302	15.302	2	0.019301	4922	DP1063-1	83.397	37.679			NaN	NaN	NaN	0	0	Median	1316100	0	1316100	611	544	572	1246	2745;2746	2745		2	9606
DSPSVWAAVPGK	1	0	Unmodified	1212.6139	0.61388734	130	P07737;CON__P02584	PFN1	Profilin-1	yes	no	0	0	0	5	0					1	19.206	19.206	2	0.014134	12324	DP1063-5	80.688	57.31			1.9248	1.6294	NaN	1	0	Median	10445000	4295700	6149100	612	130	573	1247	2747;2748;2749;2750	2748		4	9606
DSTEVEISTGER	0	1	Unmodified	1321.5998	0.59975342	589	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	1	0	1					16.282	16.282	2	0.0032868	5975	DP1063-1	103.31	63.463			NaN	NaN	NaN	0	0	Median	2040000	0	2040000	613	589	574	1248	2751	2751		1	9606
DSTLIMQLLR	0	1	Unmodified	1188.6536	0.65364367	371;404;238;219;239;363;445	P31946;P62258;P63104;P27348;P31947;P61981;Q04917	YWHAB;YWHAE;YWHAZ;YWHAQ;SFN;YWHAG;YWHAH	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta	no	no	0	0	0	4	0				1		23.933	23.933	2	0.0028478	18000	DP1063-4	111.17	73.976			NaN	NaN	NaN	0	0	Median	1715100	0	1715100	614	238;371;404;219;239;363;445	575	1249	2752;2753	2752		2	9606
DSTLIMQLLR	0	1	Oxidation (M)	1204.6486	0.64855829	371;404;238;219;239;363;445	P31946;P62258;P63104;P27348;P31947;P61981;Q04917	YWHAB;YWHAE;YWHAZ;YWHAQ;SFN;YWHAG;YWHAH	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta	no	no	0	1	0	4.5	0.5				1	1	22.981	22.981	2	0.020273	17001	DP1063-5	91.853	60.093			1.7135	1.2412	NaN	1	0	Median	6383500	1019900	5363600	615	238;371;404;219;239;363;445	575	1250;1251	2754;2755;2756;2757	2757	271	3	9606
DSYVGDEAQSK	1	0	Unmodified	1197.515	0.51496116	349;409;411	P60709;P63261;P68133;P68032;P63267;P62736	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	0	4	0				2		14.681	14.681	2	1.1703E-05	5749	DP1063-4	142.36	131.53			2.7853	1.9279	NaN	1	0	Median	72102000	17431000	54672000	616	349;409;411	576	1252;1253	2758;2759;2760	2758		3	9606
DSYVGDEAQSKR	1	1	Unmodified	1353.6161	0.61607219	349;409;411	P60709;P63261;P68133;P68032;P63267;P62736	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	0	1	4	0				2		13.654	13.654	2;3	5.8008E-05	4888	DP1063-4	145.23	128.28			2.9444	2.8627	NaN	1	0	Median	41972000	5982600	35990000	617	349;409;411	577	1254;1255	2761;2762;2763;2764;2765;2766	2763		6	9606
DTAAWTVGR	0	1	Unmodified	975.47739	0.47739386	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				17.533	17.533	2	0.00075685	8775	DP1063-2	128.69	100.51			NaN	NaN	NaN	0	0	Median	12426000	0	12426000	618	495	578	1256	2767;2768	2767		2	9606
DTGIFLDLMHLK	1	0	Unmodified	1401.7326	0.73262227	163	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	3	0			1			23.42	23.42	2	0.012364	18137	DP1063-3	85.807	57.111			NaN	NaN	NaN	0	0	Median	1637700	0	1637700	619	163	579	1257	2769	2769		1	9606
DTGKTPVEPEVAIHR	1	1	Unmodified	1647.858	0.8580338	351	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	1	5	0					1	15.379	15.379	3	0.00076503	7549	DP1063-5	138.01	113.48			1.692	1.4425	NaN	1	0	Median	11709000	4745800	6963100	620	351	580	1258	2770;2771	2771		2	9606
DTLYEAVR	0	1	Unmodified	965.48181	0.48181054	397	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					2	17.289	17.289	1;2	0.027878	9847	DP1063-5	83.753	54.603			1.3119	0.97979	16.247	2	0	Median	58809000	25042000	33767000	621	397	581	1259;1260	2772;2773	2773		1	9606
DTPGHGSGWAETPR	0	1	Unmodified	1466.6539	0.65385468	73	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				15.328	15.328	3	0.0004231	5817	DP1063-2	98.592	78.468			1.4109	1.0364	NaN	1	0	Median	9684000	3813200	5870800	622	73	582	1261	2774;2775;2776	2774		3	9606
DTQAMKEMHFHPK	2	0	2 Oxidation (M)	1630.7232	0.72319657	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2	0		1				12.606	12.606	3	0.031591	2493	DP1063-2	42.629	42.629			1.9567	1.8692	NaN	1	0	Median	4210400	1921900	2288400	623	154	583	1262	2777	2777	177;178	1	9606
DTQAMKEMHFHPK	2	0	Oxidation (M)	1614.7283	0.72828195	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		1				12.953	12.953	3	0.0032301	2838	DP1063-2	72.089	72.089			1.5851	1.5142	NaN	1	0	Median	6848100	2010400	4837700	624	154	583	1263	2778;2779	2778	177;178	2	9606
DTQSGSLLFIGR	0	1	Unmodified	1292.6725	0.67246486	317	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	4	0				1		21.157	21.157	2	0.00046923	14671	DP1063-4	137.95	101.4			1.8291	1.2417	NaN	1	0	Median	4902200	1739500	3162700	625	317	584	1264	2780;2781	2780		2	9606
DTSFEQHVLWHTGGK	1	0	Unmodified	1740.822	0.82198264	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.33	0.471	2	1				17.928	17.928	2;3	0.00011458	7777	DP1063-1	156.2	137.21			2.9193	2.4153	28.627	2	0	Median	42897000	10400000	32496000	626	303	585	1265;1266;1267	2782;2783;2784;2785;2786;2787	2782		6	9606
DTSYLFITGPDVVK	1	0	Unmodified	1553.7977	0.79772495	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0				1		22.279	22.279	2	0.0021835	16029	DP1063-4	128.88	128.88			1.2519	0.86656	NaN	1	0	Median	18844000	7653900	11190000	627	111	586	1268	2788;2789;2790;2791	2788		4	9606
DTVTISGPQAPVFEFVEQLRK	1	1	Unmodified	2360.2376	0.23761109	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		2				23.955	23.955	3	0.0003943	17210	DP1063-2	119.76	89.915			NaN	NaN	NaN	0	0	Median	0	0	0	628	303	587	1269;1270	2792;2793	2792		2	9606
DVDDGLQAAEEVGYPVMIK	1	0	Oxidation (M)	2063.9721	0.97213685	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				21.648	21.648	2;3	2.2786E-07	12346	DP1063-1	168.93	147.68			1.1508	1.0364	11.864	3	0	Median	243150000	110040000	133110000	629	460	588	1271;1272;1273	2794;2795;2796;2797;2798;2799;2800;2801;2802;2803;2804;2805;2806;2807;2808	2796	564	15	9606
DVDDGLQAAEEVGYPVMIK	1	0	Unmodified	2047.9772	0.97722223	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				22.675	22.675	2;3	1.1276E-07	13501	DP1063-1	229.48	229.48			1.1804	0.94215	8.7939	3	0	Median	60092000	25674000	34417000	630	460	588	1274;1275;1276	2809;2810;2811;2812;2813;2814;2815;2816;2817	2813		9	9606
DVDFELIKVEGK	2	0	Unmodified	1390.7344	0.73439641	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	3	0			1			19.98	19.98	3	0.02058	13641	DP1063-3	61.48	36.184			5.4512	4.8909	NaN	1	0	Median	16546000	2630500	13915000	631	301	589	1277	2818	2818		1	9606
DVDGAYMTK	1	0	Oxidation (M)	1014.4328	0.43281144	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	3	0			1			14.154	14.154	2	0.032796	5634	DP1063-3	89.698	61.489		+	NaN	NaN	NaN	0	0	Median	116990000	116990000	0	632	101	590	1278	2819	2819	71	1	9606
DVDGAYMTK	1	0	Unmodified	998.4379	0.43789681	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	0			1			15.785	15.785	2	0.0039721	7852	DP1063-3	109.48	58.133		+	NaN	NaN	NaN	0	0	Median	28738000	28738000	0	633	101	590	1279	2820;2821	2821		2	9606
DVDIIDHHDNTYTVK	1	0	Unmodified	1783.8377	0.83769228	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.33	0.471	2	1				16.882	16.882	2;3	0.00051572	6526	DP1063-1	84.173	84.173			8.6834	7.1286	NaN	1	0	Median	27177000	2208500	24969000	634	190	591	1280;1281;1282	2822;2823;2824;2825;2826	2823		5	9606
DVIEEYFK	1	0	Unmodified	1041.5019	0.50187728	206	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	20.941	20.941	2	0.039266	14612	DP1063-5	79.469	57.698			1.0839	0.91748	NaN	1	0	Median	11318000	5164600	6153100	635	206	592	1283	2827;2828	2828		2	9606
DVLLPWYNAYR	0	1	Unmodified	1408.7139	0.71393574	274	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				23.449	23.449	2	0.03442	16565	DP1063-2	78.149	27.344			NaN	NaN	NaN	0	0	Median	4922400	4922400	0	636	274	593	1284	2829	2829		1	9606
DVLSVAFSSDNR	0	1	Unmodified	1308.631	0.63099397	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		20.563	20.563	2	0.00088716	14012	DP1063-4	114.5	114.5			1.8722	1.2378	NaN	1	0	Median	16073000	6344900	9728600	637	408	594	1285	2830	2830		1	9606
DVNAAIATIK	1	0	Unmodified	1014.571	0.5709599	413;605	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3.75	0.829			2	1	1	18.133	18.133	1;2	0.0014052	11065	DP1063-3	110.76	74.31			2.0722	1.664	16.982	4	0	Median	386480000	128680000	257800000	638	413;605	595	1286;1287;1288;1289	2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841	2833		10	9606
DVNQQEFVR	0	1	Unmodified	1133.5465	0.54653606	265	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	16.433	16.433	2	0.0030015	8809	DP1063-5	113.26	74.003			NaN	NaN	NaN	0	0	Median	29020000	0	29020000	639	265	596	1290	2842	2842		1	9606
DVQDSLTVSNEAQTAK	1	0	Unmodified	1704.8166	0.81662249	328	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	4	0				1		17.028	17.028	2	1.1919E-17	9169	DP1063-4	225.33	182.78			NaN	NaN	NaN	0	0	Median	7709400	0	7709400	640	328	597	1291	2843;2844	2844		2	9606
DVQEIFR	0	1	Unmodified	905.46068	0.46068117	34	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	yes	no	0	0	0	4	0				1		18.802	18.802	2	0.027536	11620	DP1063-4	104.11	52.539			2.4183	1.5119	NaN	1	0	Median	10365000	3375800	6988900	641	34	598	1292	2845;2846	2846		2	9606
DYDDMSPR	0	1	Oxidation (M)	1013.376	0.37602484	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	3	0			1			13.858	13.858	2	0.026135	5322	DP1063-3	75.738	67.798			2.6419	2.0393	NaN	1	0	Median	6822600	2221900	4600700	642	362	599	1293	2847;2848	2847	457	2	9606
DYDPMGNKKEPEK	3	0	Oxidation (M)	1565.7032	0.70317264	587	Q96LR7	C2orf50	Uncharacterized protein C2orf50	yes	yes	0	1	2	3	0			1			16.757	16.757	3	0.044643	9164	DP1063-3	55.98	31.565			NaN	NaN	NaN	0	0	Median	87077000	87077000	0	643	587	600	1294	2849	2849	706	1	9606
DYGVYLEDSGHTLR	0	1	Unmodified	1623.7529	0.75290002	462	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					2	18.621	18.621	2;3	9.5111E-14	11596	DP1063-5	205.56	178.81			1.8542	1.3848	NaN	1	0	Median	14682000	5859800	8822000	644	462	601	1295;1296	2850;2851;2852	2850		3	9606
DYLHLPPEIVPATLR	0	1	Unmodified	1732.9512	0.9512059	293	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					1	21.881	21.881	2	0.0076472	15700	DP1063-5	95.618	60.095			NaN	NaN	NaN	0	0	Median	4192300	0	4192300	645	293	602	1297	2853;2854	2854		2	9606
DYLPLVLGPTAMR	0	1	Oxidation (M)	1460.7697	0.76973606	109	P05164	MPO	Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain	yes	yes	0	1	0	1	0	1					16.505	16.505	3	0.015798	6182	DP1063-1	49.28	27.624			1.1871	1.0393	NaN	1	0	Median	49568000	20954000	28614000	646	109	603	1298	2855	2855	82	1	9606
DYNVTANSK	1	0	Unmodified	1010.4669	0.46688876	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		14.191	14.191	2	0.0029354	5556	DP1063-4	114.89	89.757			2.7696	1.9171	NaN	1	0	Median	7673800	2177900	5495900	647	91	604	1299	2856	2856		1	9606
DYPVVSIEDPFDQDDWGAWQK	1	0	Unmodified	2509.1074	0.10738478	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				2		25.055	25.055	2	0.00014519	19266	DP1063-4	146.59	111.06			NaN	NaN	NaN	0	0	Median	2779400	0	2779400	648	123	605	1300;1301	2857;2858;2859	2858		3	9606
DYQELMNTK	1	0	Oxidation (M)	1156.507	0.50703901	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	0	2.5	0.5		1	1			15.477	15.477	2	0.0077179	7343	DP1063-3	104.06	69.804		+	NaN	NaN	NaN	0	0	Median	86557000	86557000	0	649	101	606	1302;1303	2860;2861;2862	2861	72	3	9606
DYQELMNTK	1	0	Unmodified	1140.5121	0.51212439	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	0			1			17.827	17.827	2	0.00083628	10629	DP1063-3	137.9	77.427		+	NaN	NaN	NaN	0	0	Median	32216000	32216000	0	650	101	606	1304	2863;2864	2863		2	9606
DYQELMNVK	1	0	Oxidation (M)	1154.5278	0.52777445	22	CON__P35908v2;P35908;CON__P35908;CON__Q01546;Q01546;CON__Q5XKE5;Q5XKE5;P12035;CON__P12035	KRT2;KRT76;KRT79;KRT3	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 3	yes	no	0	1	0	3	0			1			16.676	16.676	2	0.0034906	9042	DP1063-3	115.49	70.159		+	NaN	NaN	NaN	0	0	Median	19623000	19623000	0	651	22	607	1305	2865;2866	2866	23	2	9606
EAAENHPLLQAIR	0	1	Unmodified	1460.7736	0.77357588	695				yes	yes	0	0	0	1	0	1					16.505	16.505	3	0.0020991	6207	DP1063-1	83.081	58.73	+		1.1871	1.0393	NaN	1	0	Median	49568000	20954000	28614000	652	695	608	1306	2867;2868	2867		2	9606
EAAENSLVAYK	1	0	Unmodified	1193.5928	0.59281755	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				1		16.607	16.607	2	1.6252E-05	8654	DP1063-4	138.08	102.93			2.2497	1.5572	NaN	1	0	Median	16901000	4479700	12421000	653	371	609	1307	2869;2870;2871;2872	2871		4	9606
EAATAVEQEKEILLEMIHSIQNSQDMR	1	1	2 Oxidation (M)	3144.5067	0.50672802	88	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	2	1	5	0					1	21.489	21.489	4	0.030025	15202	DP1063-5	47.554	26.785			NaN	NaN	NaN	0	0	Median	7204000	0	7204000	654	88	610	1308	2873	2873	63;64	1	9606
EAATQAQQTLGSTIDK	1	0	Unmodified	1660.8268	0.82679325	298	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	2	0		1				17.012	17.012	2	0.00018993	8045	DP1063-2	172.33	127.35			NaN	NaN	NaN	0	0	Median	3981400	0	3981400	655	298	611	1309	2874	2874		1	9606
EACGVIVELIK	1	0	Unmodified	1229.669	0.66895938	662	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			1			20.916	20.916	2	0.010283	14906	DP1063-3	94.409	38.879			NaN	NaN	NaN	0	0	Median	0	0	0	656	662	612	1310	2875	2875		1	9606
EAEAAIYHLQLFEELRR	0	2	Unmodified	2087.08	0.079988241	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	3	0			1			20.851	20.851	3	4.7536E-10	14837	DP1063-3	183.96	167.54			1.8913	1.7292	NaN	1	0	Median	26291000	8819300	17471000	657	168	613	1311	2876;2877	2876		2	9606
EAEEEEASCLLGPTLK	1	0	Unmodified	1774.8295	0.82949536	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	0.816		1	1	1		19.836	19.836	2	1.6016E-88	11910	DP1063-2	308.12	261.53			NaN	NaN	NaN	0	0	Median	61929000	0	61929000	658	524	614	1312;1313;1314	2878;2879;2880;2881;2882	2878		5	9606
EAEEEEASCLLGPTLKK	2	0	Unmodified	1902.9245	0.92445838	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2	0		1				18.319	18.319	3	0.022676	9823	DP1063-2	71.354	40.779			NaN	NaN	NaN	0	0	Median	0	0	0	659	524	615	1315	2883	2883		1	9606
EAEGVYEAKEQLLPPK	2	0	Unmodified	1799.9305	0.93053004	562	Q8WZ42	TTN	Titin	yes	yes	0	0	1	3	0			1			20.631	20.631	2	0.0011609	14556	DP1063-3	84.198	33.412			0.83019	0.74486	NaN	1	0	Median	11947000	6175000	5772500	660	562	616	1316	2884	2884		1	9606
EAEPPPVEAMLTPASQNDLSDFR	0	1	Oxidation (M)	2529.1693	0.16933311	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	0	2	0		2				20.45	20.45	2;3	4.0487E-05	12639	DP1063-2	125.39	93.103			NaN	NaN	NaN	0	0	Median	131340000	0	131340000	661	524	617	1317;1318	2885;2886;2887;2888;2889	2886	661	5	9606
EAEPPPVEAMLTPASQNDLSDFR	0	1	Unmodified	2513.1744	0.17441849	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.33	0.471		2	1			22.493	22.493	2;3	1.1053E-06	15361	DP1063-2	176.42	150.27			NaN	NaN	NaN	0	0	Median	38988000	0	38988000	662	524	617	1319;1320;1321	2890;2891;2892;2893;2894	2891		5	9606
EAGAGGLAIAVEGPSK	1	0	Unmodified	1425.7464	0.74635808	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					18.34	18.34	2	0.00052627	8267	DP1063-1	126.83	82.192			NaN	NaN	NaN	0	0	Median	6875300	0	6875300	663	190	618	1322	2895;2896	2895		2	9606
EAGGNMSIQFLGTVYK	1	0	Oxidation (M)	1729.8345	0.83452116	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.75	1.3		1	1		2	20.384	20.384	2	8.0757E-15	14119	DP1063-3	205.31	205.31			1.5227	1.2271	18.693	3	0	Plateau	254710000	100590000	154130000	664	110	619	1323;1324;1325;1326	2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909	2901	85	13	9606
EAGGNMSIQFLGTVYK	1	0	Unmodified	1713.8396	0.83960654	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.603	21.603	2	1.0956E-09	15792	DP1063-3	191.79	145.43			1.1209	0.90004	NaN	1	0	Median	49831000	25259000	24572000	665	110	619	1327	2910;2911;2912;2913	2910		4	9606
EAIEGTYIDKK	2	0	Unmodified	1265.6503	0.65033243	376	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					2	15.125	15.125	2;3	3.4056E-06	7238	DP1063-5	138.08	91.951			4.165	4.0696	1.2932	2	0	Median	67643000	13751000	53892000	666	376	620	1328;1329	2914;2915;2916;2917;2918	2915		5	9606
EAIIPGSVYDR	0	1	Unmodified	1218.6245	0.62445203	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				18.423	18.423	2	0.043821	10041	DP1063-2	74.92	14.01			NaN	NaN	NaN	0	0	Median	8628400	0	8628400	667	569	621	1330	2919	2919		1	9606
EAIQQQQNQLVWVSEGK	1	0	Unmodified	1984.0014	0.0014035686	450	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1	0	1					19.38	19.38	2	0.00059422	9577	DP1063-1	123.28	70.195			NaN	NaN	NaN	0	0	Median	2513600	0	2513600	668	450	622	1331	2920;2921	2920		2	9606
EAIVNSCVFVHQTLHQANAR	0	1	Unmodified	2293.1386	0.13858253	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					17.75	17.75	3	0.00077972	7559	DP1063-1	106.31	72.614			NaN	NaN	NaN	0	0	Median	1890700	0	1890700	669	487	623	1332	2922;2923	2922		2	9606
EALLSSAVDHGSDEVK	1	0	Unmodified	1655.8002	0.80024414	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			2			17.083	17.083	2;3	9.200300000000001E-25	9668	DP1063-3	229.56	196.52			NaN	NaN	NaN	0	0	Median	58588000	0	58588000	670	419	624	1333;1334	2924;2925;2926;2927	2927		4	9606
EAMGIYISTLK	1	0	Oxidation (M)	1240.6373	0.6373249	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	1	0	4	0				1		18.512	18.512	2	0.0053092	11184	DP1063-4	85.807	85.807			1.3317	0.92178	NaN	1	0	Median	12834000	5184900	7649600	671	86	625	1335	2928;2929	2928	62	2	9606
EANHNVSAPYGR	0	1	Unmodified	1313.6113	0.61126158	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		2				13.537	13.537	2;3	0.0070037	3517	DP1063-2	62.694	47.818			1.2304	0.93519	24.713	2	0	Median	27202000	12829000	14373000	672	543;581	626	1336;1337	2930;2931	2930		2	9606
EANNFLWPFK	1	0	Unmodified	1264.6241	0.6240581	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		23.161	23.161	2	0.010776	17080	DP1063-4	83.005	83.005			1.34	0.92752	NaN	1	0	Median	4178200	1781800	2396400	673	182	627	1338	2932	2932		1	9606
EAPAQPAPEK	1	0	Unmodified	1036.5189	0.51892433	511	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	3	0			1			12.759	12.759	2	6.1878E-05	3988	DP1063-3	129.42	129.42			0.90433	0.72617	NaN	1	0	Median	26725000	14596000	12129000	674	511	628	1339	2933;2934;2935;2936	2935		4	9606
EAPPMEKPEVVK	2	0	Oxidation (M)	1368.6959	0.69590241	389	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	5	0					1	13.717	13.717	3	0.0033864	5527	DP1063-5	68.676	40.393			1.1166	1.091	NaN	1	0	Median	9553100	4061300	5491800	675	389	629	1340	2937;2938;2939;2940	2937	481	4	9606
EAQELSQNSAIK	1	0	Unmodified	1316.6572	0.65720872	629	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				14.994	14.994	2	0.0033609	5361	DP1063-2	97.597	80.084			1.8952	1.5855	NaN	1	0	Median	8825700	3512500	5313200	676	629	630	1341	2941;2942;2943	2942		3	9606
EAQGNSSAGVEAAEQRPVEDGER	0	2	Unmodified	2385.0793	0.079272552	535	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	1	2.5	0.5		1	1			15.052	15.052	3	0.0006095	5434	DP1063-2	101.38	69.432			NaN	NaN	NaN	0	0	Median	18730000	0	18730000	677	535	631	1342;1343	2944;2945;2946;2947;2948;2949;2950	2945		7	9606
EASFEYLQNEGER	0	1	Unmodified	1570.69	0.68996541	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1.09	0.378	31	1	1			25.511	25.511	2;3	2.0824999999999998E-50	9979	DP1063-2	252.82	230.83			1.3598	1.1619	17.142	5	0	Median	868000000	352270000	515740000	678	43;460	632	1344;1345;1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359;1360;1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374;1375;1376	2951;2952;2953;2954;2955;2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967;2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978;2979;2980;2981;2982;2983;2984;2985;2986;2987;2988;2989;2990;2991;2992;2993;2994;2995;2996;2997;2998;2999;3000;3001;3002;3003;3004;3005	3003		55	9606
EATAGNPGGQTVR	0	1	Unmodified	1256.6109	0.61092723	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					13.264	13.264	2	0.00075235	2616	DP1063-1	131.82	108.5			2.0758	1.671	NaN	1	0	Median	4627200	1481600	3145600	679	222	633	1377	3006;3007;3008;3009	3009		4	9606
EATTEFSVDAR	0	1	Unmodified	1224.5622	0.5622457	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					16.894	16.894	2	0.0059719	6520	DP1063-1	93.111	49.864			15.281	12.757	NaN	1	0	Median	25135000	1924800	23210000	680	190	634	1378	3010	3010		1	9606
EAVGDLLDAFK	1	0	Unmodified	1176.6027	0.60265396	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2.4	1.02	1	2	1	1		23.384	23.384	2	2.5295E-05	13783	DP1063-1	144.65	104.71			1.3923	1.3152	15.654	3	0	Plateau	58668000	21560000	37108000	681	442	635	1379;1380;1381;1382;1383	3011;3012;3013;3014;3015;3016;3017;3018	3012		8	9606
EAYPGDVFYLHSR	0	1	Unmodified	1552.731	0.73104237	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			19.095	19.095	2;3	0.00024694	12346	DP1063-3	110.15	90.951			1.4964	1.1145	2.6808	2	0	Median	63125000	25520000	37605000	682	207	636	1384;1385	3019;3020;3021;3022;3023;3024	3019		6	9606
EAYTAVVYHNR	0	1	Unmodified	1321.6415	0.64149908	589	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	1	0	1					15.549	15.549	2	0.040183	5176	DP1063-1	76.17	40.946			NaN	NaN	NaN	0	0	Median	765410	0	765410	683	589	637	1386	3025	3025		1	9606
ECCDKPLLEK	2	0	Unmodified	1290.5948	0.59480816	14	CON__P02769			yes	yes	0	0	1	2	1	2		2			14.387	14.387	2;3	0.0019209	3895	DP1063-1	104.52	68.858		+	NaN	NaN	NaN	0	0	Median	96943000	96943000	0	684	14	638	1387;1388;1389;1390	3026;3027;3028;3029;3030;3031	3027		6	9606
ECCHGDLLECADDR	0	1	Unmodified	1748.6553	0.65525294	14	CON__P02769			yes	yes	0	0	0	2	0.816	1	1	1			16.257	16.257	2	7.806E-46	8442	DP1063-3	272.1	272.1		+	NaN	NaN	NaN	0	0	Median	49151000	49151000	0	685	14	639	1391;1392;1393	3032;3033;3034;3035;3036;3037;3038	3036		7	9606
ECCHGDLLECADDRADLAK	1	1	Unmodified	2246.9355	0.93545055	14	CON__P02769			yes	yes	0	0	1	2.3	0.9	2	4	3	1		17.035	17.035	2;3;4	1.4025E-148	9550	DP1063-3	358.73	347.63		+	NaN	NaN	NaN	0	0	Median	535420000	535420000	0	686	14	640	1394;1395;1396;1397;1398;1399;1400;1401;1402;1403	3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055	3053		17	9606
ECCQPVLVYIPPQAELR	0	1	Unmodified	2071.0231	0.023066988	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	1.11	4	1		1		21.395	21.395	2;3	2.6058E-14	12032	DP1063-1	228.17	207.11			0.91336	0.84561	0.97804	2	0	Median	299700000	168620000	131080000	687	460	641	1404;1405;1406;1407;1408;1409	3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071	3057		16	9606
ECFVCTACR	0	1	Unmodified	1201.4678	0.46783351	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		16.025	16.025	2	0.0051618	7936	DP1063-4	107.01	93.63			1.386	0.8563	NaN	1	0	Median	9449000	4044700	5404300	688	485	642	1410	3072;3073;3074;3075	3072		4	9606
ECLPLIIFLR	0	1	Unmodified	1272.7264	0.72641468	383	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4.67	0.471				1	2	24.759	24.759	2	0.0033279	18984	DP1063-4	98.458	98.458			1.875	1.2988	NaN	1	0	Median	4409700	1757000	2652700	689	383	643	1411;1412;1413	3076;3077;3078;3079;3080	3078		5	9606
ECLVCTGCQTPLAGQQFTSR	0	1	Unmodified	2312.0348	0.034770661	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		19.177	19.177	2	2.7899E-11	12112	DP1063-4	171.76	117.42			NaN	NaN	NaN	0	0	Median	0	0	0	690	477	644	1414	3081	3081		1	9606
ECPSDECGAGVFMASHFDR	0	1	Oxidation (M)	2186.8456	0.84557291	403	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	1	0	5	0					1	17.812	17.812	3	0.0057754	10564	DP1063-5	84.581	76.684			NaN	NaN	NaN	0	0	Median	10563000	0	10563000	691	403	645	1415	3082	3082	496	1	9606
ECVPNSNER	0	1	Unmodified	1103.4666	0.46657118	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	0	3	0			1			13.006	13.006	2	0.032897	4332	DP1063-3	84.498	50.245		+	NaN	NaN	NaN	0	0	Median	1917400	1917400	0	692	23	646	1416	3083	3083		1	
EDFDSLLQSAK	1	0	Unmodified	1251.5983	0.59829686	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				20.691	20.691	2	0.0035124	13122	DP1063-2	109.79	59.749			NaN	NaN	NaN	0	0	Median	3975400	0	3975400	693	134	647	1417	3084	3084		1	9606
EDGAISTIVLR	0	1	Unmodified	1172.6401	0.6401021	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			19.322	19.322	2	0.024591	12796	DP1063-3	81.525	18.045			NaN	NaN	NaN	0	0	Median	10437000	0	10437000	694	319	648	1418	3085	3085		1	9606
EDGLAQQQTQLNLR	0	1	Unmodified	1612.8169	0.81689726	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.67	0.471	1	2				17.783	17.783	2	3.3749E-39	7574	DP1063-1	251.43	205.02			2.3221	1.8912	NaN	1	0	Median	29120000	6031800	23088000	695	303	649	1419;1420;1421	3086;3087;3088;3089;3090;3091;3092;3093;3094	3087		9	9606
EDGNEEDKENQGDETQGQQPPQR	1	1	Unmodified	2627.0968	0.096773109	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		13.329	13.329	3	3.0439E-29	4517	DP1063-4	216.65	216.65			1.3723	1.3343	NaN	1	0	Median	20839000	7816400	13023000	696	410	650	1422	3095;3096;3097;3098;3099;3100;3101;3102	3101		8	9606
EDLQLDKPASGVK	2	0	Unmodified	1398.7355	0.73545904	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				15.591	15.591	2	0.00083975	6179	DP1063-2	126.71	80.706			0.70128	0.6699	NaN	1	0	Median	11123000	6415200	4708000	697	418	651	1423	3103;3104;3105;3106	3104		4	9606
EDQLLCTDCYSNEYSSK	1	0	Unmodified	2110.846	0.84595006	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		18.628	18.628	2	2.3805E-11	11371	DP1063-4	203.29	170.09			NaN	NaN	NaN	0	0	Median	4605100	0	4605100	698	485	652	1424	3107;3108	3108		2	9606
EDQTEYLEER	0	1	Unmodified	1310.5626	0.56263964	135;132	P08238;Q58FF7;Q58FF6;P07900	HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha	no	no	0	0	0	2	0		1				16.599	16.599	2	2.16E-05	7444	DP1063-2	133.13	109.15			2.5686	1.994	NaN	1	0	Median	51562000	15777000	35785000	699	135;132	653	1425	3109;3110;3111;3112	3109		4	9606
EDQTEYLEERR	0	2	Unmodified	1466.6638	0.66375066	135;132	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	0	0	1	2	0		1				15.42	15.42	3	0.02381	5970	DP1063-2	47.302	47.302			2.2962	2.1383	NaN	1	0	Median	10252000	2976700	7274900	700	135;132	654	1426	3113	3113		1	9606
EDSVKPGAHLTVK	2	0	Unmodified	1379.7409	0.74087877	322	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		13.801	13.801	3	0.030163	5045	DP1063-4	56.139	56.139			1.6283	1.691	NaN	1	0	Median	8290200	3196200	5094000	701	322	655	1427	3114;3115	3114		2	9606
EEAENTLQSFR	0	1	Unmodified	1322.6103	0.61025853	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3.5	0.5			1	1		17.559	17.559	2	4.8417E-16	10272	DP1063-3	218.55	155.13			NaN	NaN	NaN	0	0	Median	8948900	0	8948900	702	136	656	1428;1429	3116;3117	3116		2	9606
EEAISNMVVALK	1	0	Oxidation (M)	1318.6803	0.68025235	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	0	1.5	0.5	1	1				17.868	17.868	2	7.6581E-05	7640	DP1063-1	156.83	103.33			1.3737	1.2279	6.2544	2	0	Median	245090000	104280000	140810000	703	43;460	657	1430;1431	3118;3119;3120;3121;3122;3123;3124;3125	3120	36	8	9606
EEAISNMVVALK	1	0	Unmodified	1302.6853	0.68533773	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1.5	0.5	1	1				20.294	20.294	2	9.0979E-09	10677	DP1063-1	186.41	186.41			1.2158	1.0544	3.4034	2	0	Median	89658000	39679000	49980000	704	43;460	657	1432;1433	3126;3127;3128;3129;3130;3131;3132;3133	3128		8	9606
EEASGSSVTAEEAK	1	0	Unmodified	1393.6209	0.6208828	164	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	2	0		3				13.609	13.609	2	0.00015543	3623	DP1063-2	152.7	98.63			NaN	NaN	NaN	0	0	Median	4071300	0	4071300	705	164	658	1434;1435;1436	3134;3135;3136;3137	3134		4	9606
EEASGSSVTAEEAKK	2	0	Unmodified	1521.7158	0.71584581	164	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	2	0		1				12.859	12.859	3	0.00028355	2761	DP1063-2	112.02	84.693			1.3528	1.2923	NaN	1	0	Median	6165500	2926200	3239300	706	164	659	1437	3138;3139;3140;3141	3140		4	9606
EEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	409	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	4	0				1		24.332	24.332	2	8.5955E-11	18462	DP1063-4	191.48	191.48			3.0799	2.1319	NaN	1	0	Median	51619000	13765000	37855000	707	409	660	1438	3142;3143;3144;3145;3146;3147;3148	3148	501	7	9606
EEEIAALVIDNGSGMCK	1	0	Acetyl (Protein N-term)	1876.8547	0.85466426	409	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	0	0	4	0				1		25.147	25.147	2	4.6075000000000006E-30	19322	DP1063-4	228.61	191.65			3.1389	2.1726	NaN	1	0	Median	13621000	3041600	10579000	708	409	660	1439	3149;3150;3151;3152;3153;3154;3155	3153		7	9606
EEFASTCPDDEEIELAYEQVAK	1	0	Unmodified	2572.1163	0.11629449	37	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	4	0				1		22.165	22.165	2	0.00045218	15941	DP1063-4	113.59	86.617			NaN	NaN	NaN	0	0	Median	2862000	0	2862000	709	37	661	1440	3156	3156		1	9606
EEFLIPIYHQVAVQFADLHDTPGR	0	1	Unmodified	2794.4079	0.40786432	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3.5	0.957		1	2	2	1	23.119	23.119	3;4	1.3404E-15	17001	DP1063-4	181.23	181.23			1.0001	0.70479	6.7756	6	0	Median	101700000	48866000	52829000	710	460	662	1441;1442;1443;1444;1445;1446	3157;3158;3159;3160;3161;3162;3163;3164;3165;3166;3167	3160		10	9606
EEGIGPENLR	0	1	Unmodified	1112.5462	0.54620171	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				16.962	16.962	2	2.122E-07	6562	DP1063-1	167.23	135.29			1.2848	1.0555	6.806	2	0	Median	146060000	66577000	79483000	711	460	663	1447;1448	3168;3169;3170;3171;3172;3173	3171		6	9606
EELNAISGPNEFAEFYNR	0	1	Unmodified	2098.9596	0.95959833	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			2			21.909	21.909	2	0.0052348	16193	DP1063-3	113.52	87.291			NaN	NaN	NaN	0	0	Median	0	0	0	712	456	664	1449;1450	3174;3175	3175		2	9606
EELTLEGIR	0	1	Unmodified	1058.5608	0.56078914	350	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	4	0				1		19.171	19.171	2	0.018878	12122	DP1063-4	92.439	36.429			NaN	NaN	NaN	0	0	Median	4814500	0	4814500	713	350	665	1451	3176	3176		1	9606
EENKSDMNTVLNYIFSHAQVTK	2	0	Oxidation (M)	2583.2275	0.22751669	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	2	2				21.408	21.408	3;4	2.0417E-29	12066	DP1063-1	214.86	141.17			1.3798	1.3867	10.548	4	0	Median	136640000	53639000	83000000	714	460	666	1452;1453;1454;1455	3177;3178;3179;3180;3181;3182;3183;3184;3185;3186;3187	3178	565	11	9606
EENKSDMNTVLNYIFSHAQVTK	2	0	Unmodified	2567.2326	0.23260207	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1				22.803	22.803	3	0.013303	15782	DP1063-2	112.57	86.633			NaN	NaN	NaN	0	0	Median	0	0	0	715	460	666	1456	3188	3188		1	9606
EFFEIMPNYAK	1	0	Oxidation (M)	1403.6431	0.64313856	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.149	20.149	2	2.609E-06	13853	DP1063-3	153.08	129.93			1.5508	1.2453	NaN	1	0	Median	50843000	16145000	34698000	716	111	667	1457	3189;3190	3189	98	2	9606
EFFEIMPNYAK	1	0	Unmodified	1387.6482	0.64822394	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.605	21.605	2	1.3471E-09	15830	DP1063-3	185.72	160.59			1.1829	0.9499	NaN	1	0	Median	24076000	10585000	13490000	717	111	667	1458	3191;3192	3192		2	9606
EFHLNESGDPSSK	1	0	Unmodified	1445.6423	0.64228694	148	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				2		15.488	15.488	2;3	0.00083316	7268	DP1063-4	123.96	87.639			1.8529	1.2826	NaN	1	0	Median	8951600	2269200	6682400	718	148	668	1459;1460	3193;3194;3195	3195		3	9606
EFSFEAWNAK	1	0	Unmodified	1227.556	0.55603812	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.906	20.906	2	0.013452	13360	DP1063-2	80.165	63.692			1.1618	0.97197	NaN	1	0	Median	9561100	4157900	5403200	719	418	669	1461	3196	3196		1	9606
EFSITDVVPYPISLR	0	1	Unmodified	1734.9192	0.91923707	247	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	2	0		1				24.279	24.279	2	0.0001646	17635	DP1063-2	145.31	79.121			NaN	NaN	NaN	0	0	Median	5199100	0	5199100	720	247	670	1462	3197;3198	3197		2	9606
EFTQQNKATLVDHGIR	1	1	Unmodified	1855.9541	0.95405945	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.634	15.634	3	0.010989	5242	DP1063-1	62.861	62.861			1.3419	1.2512	NaN	1	0	Median	6384700	3019500	3365200	721	460	671	1463	3199	3199		1	9606
EGALCEENMR	0	1	Oxidation (M)	1223.4911	0.49107137	165	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	2	0		1				13.877	13.877	2	0.0044919	3945	DP1063-2	88.37	64.148			2.4295	1.7693	NaN	1	0	Median	12421000	3891800	8529200	722	165	672	1464	3200	3200	206	1	9606
EGGFLLLHTLLR	0	1	Unmodified	1367.7925	0.79252041	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1				22.439	22.439	2	0.0029982	15367	DP1063-2	106.62	71.174			NaN	NaN	NaN	0	0	Median	5268100	0	5268100	723	303	673	1465	3201	3201		1	9606
EGGLGPLNIPLLADVTR	0	1	Unmodified	1733.9676	0.96758424	241	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	5	0					1	24.656	24.656	2	0.036515	18805	DP1063-5	81.278	48.278			NaN	NaN	NaN	0	0	Median	1980100	0	1980100	724	241	674	1466	3202;3203	3202		2	9606
EGGLRAQMDQVK	1	1	Oxidation (M)	1346.6612	0.66124824	579	Q96EF0	MTMR8	Myotubularin-related protein 8	yes	yes	0	1	1	1	0	1					20.03	20.03	2	0.037819	10373	DP1063-1	77.677	33.908			NaN	NaN	NaN	0	0	Median	0	0	0	725	579	675	1467	3204	3204	697	1	9606
EGIPALDNFLDKL	1	0	Unmodified	1443.7609	0.76094551	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	2	0		1				25.39	25.39	2	0.00042733	18936	DP1063-2	101.38	69.372			1.7648	1.4764	NaN	1	0	Median	4929600	1672000	3257600	726	165	676	1468	3205;3206	3206		2	9606
EGLGVNEVHYVDNQDCIDLIEAK	1	0	Unmodified	2629.233	0.232996	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				20.402	20.402	3	0.00021511	12663	DP1063-2	108.69	77.625			NaN	NaN	NaN	0	0	Median	18334000	0	18334000	727	654	677	1469	3207;3208	3208		2	9606
EGLPLMVFANWR	0	1	Oxidation (M)	1447.7282	0.7282056	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.5	1.12	1	1	1	1		23.477	23.477	2	0.0004041	16621	DP1063-2	121.09	121.09			1.2383	0.92702	13.646	4	0	Median	134970000	57083000	77886000	728	460	678	1470;1471;1472;1473	3209;3210;3211;3212;3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223;3224;3225;3226;3227	3219	566	19	9606
EGLPLMVFANWR	0	1	Unmodified	1431.7333	0.73329097	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		24.79	24.79	2	1.2266E-05	15839	DP1063-1	168.26	168.26			1.203	1.0572	13.197	4	0	Linear	48013000	22029000	25984000	729	460	678	1474;1475;1476;1477	3228;3229;3230;3231;3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243	3231		16	9606
EGMNIVEAMER	0	1	2 Oxidation (M)	1309.5642	0.56423631	401	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	2	0	5	0					1	15.142	15.142	2	0.0098078	7324	DP1063-5	60.102	60.102			2.211	1.6513	NaN	1	0	Median	12299000	3511200	8788200	730	401	679	1478	3244	3244	491;492	1	9606
EGPEGFAR	0	1	Unmodified	861.39808	0.39808091	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			15.26	15.26	2	0.0075938	7107	DP1063-3	117.16	26.174			1.2909	1.2137	13.75	3	0	Plateau	814280000	346590000	467690000	731	154	680	1479;1480;1481	3245;3246;3247;3248;3249;3250;3251;3252;3253;3254	3253		10	9606
EGQGEGETQEAAAATAAAR	0	1	Unmodified	1816.8187	0.81874776	345	P58107	EPPK1	Epiplakin	yes	no	0	0	0	1	0	2					15.85	15.85	2	2.5225E-07	5515	DP1063-1	185.66	140.54			NaN	NaN	NaN	0	0	Median	1618000	0	1618000	732	345	681	1482;1483	3255;3256;3257	3256		3	9606
EGSIEIDIPVPK	1	0	Unmodified	1295.6973	0.69728262	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		20.597	20.597	2	0.00071998	14451	DP1063-3	121.83	121.83			1.2535	1.0274	1.4411	2	0	Median	215890000	97809000	118080000	733	595	682	1484;1485;1486	3258;3259;3260;3261;3262;3263;3264;3265;3266	3263		9	9606
EGSLSPASVGSDTLSDLGISSLQDGLALHIR	0	1	Unmodified	3094.5782	0.57823671	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.926	23.926	3	8.2936E-05	14855	DP1063-1	73.13	52.721			NaN	NaN	NaN	0	0	Median	1645600	0	1645600	734	460	683	1487	3267	3267		1	9606
EHALLAYTLGVK	1	0	Unmodified	1313.7343	0.73433683	412	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.67	1.25	2		2	2		19.068	19.068	2;3	2.2505E-09	11904	DP1063-4	144.7	144.7			2.1784	1.6072	23.932	6	0	Median	177100000	55968000	121130000	735	412	684	1488;1489;1490;1491;1492;1493	3268;3269;3270;3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284;3285;3286;3287	3285		20	9606
EHHFGSSGMTLHER	0	1	Oxidation (M)	1639.7161	0.71613736	668	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	1	0	2	0		1				12.857	12.857	4	0.0098258	2754	DP1063-2	52.891	46.275			1.9842	1.5095	NaN	1	0	Median	6434200	2058100	4376100	736	668	685	1494	3288;3289	3288	777	2	9606
EHIKNPDWR	1	1	Unmodified	1193.5942	0.59415496	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	2	0		1				13.872	13.872	3	0.012968	3946	DP1063-2	87.258	62.405			NaN	NaN	NaN	0	0	Median	5454700	0	5454700	737	495	686	1495	3290	3290		1	9606
EHINLGCDMDFDIAGPSIR	0	1	Oxidation (M)	2174.9725	0.97248798	191	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	1	0	4	0				1		19.835	19.835	3	0.015033	13022	DP1063-4	75.358	54.125			NaN	NaN	NaN	0	0	Median	5624000	0	5624000	738	191	687	1496	3291	3291	241	1	9606
EHVIEALR	0	1	Unmodified	965.52943	0.52942943	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	5	0					2	15.166	15.166	2	0.017022	7339	DP1063-5	98.523	60.39			3.0041	2.2436	NaN	1	0	Median	29063000	9335700	19728000	739	220	688	1497;1498	3292;3293;3294	3292		3	9606
EHVIEALRR	0	2	Unmodified	1121.6305	0.63054046	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	1	5	0					1	14.317	14.317	2	0.0016245	6257	DP1063-5	98.299	9.3569			3.5479	3.019	NaN	1	0	Median	7620900	1905700	5715200	740	220	689	1499	3295	3295		1	9606
EIAEAYLGK	1	0	Unmodified	992.51786	0.51786169	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			17.353	17.353	2	0.0067308	9998	DP1063-3	101.6	27.626			3.7795	3.0349	NaN	1	0	Median	28952000	6439700	22513000	741	153	690	1500	3296;3297	3297		2	9606
EIAEAYLGYPVTNAVITVPAYFNDSQR	0	1	Unmodified	3000.4869	0.4869025	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			24.208	24.208	3	2.2203E-05	19119	DP1063-3	71.159	71.159			2.2839	1.7874	NaN	1	0	Median	5835800	2032400	3803400	742	149	691	1501	3298;3299;3300;3301	3298		4	9606
EIAQDFK	1	0	Unmodified	849.42323	0.42323303	416	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	0	5	0					1	15.492	15.492	2	0.031735	7653	DP1063-5	97.068	10.201			1.5822	1.3394	NaN	1	0	Median	390060000	150320000	239740000	743	416	692	1502	3302;3303	3302		2	9606
EIAQDFKTDLR	1	1	Unmodified	1334.683	0.68302954	416	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	5	0					2	17.098	17.098	2;3	0.0002669	9603	DP1063-5	125.75	80.379			1.7	1.4493	1.4563	2	0	Median	197790000	74704000	123090000	744	416	693	1503;1504	3304;3305;3306;3307;3308;3309	3309		6	9606
EIAQEFKTDLR	1	1	Unmodified	1348.6987	0.69867961	533	Q5TEC6	HIST2H3PS2	Histone H3	yes	yes	0	0	1	5	0					2	17.193	17.193	2;3	0.0015759	9690	DP1063-5	108.57	75.192			1.6033	1.3669	2.2526	2	0	Median	164360000	66206000	98157000	745	533	694	1505;1506	3310;3311;3312;3313;3314;3315	3310		6	9606
EIDTDSTSQGESK	1	0	Unmodified	1395.6001	0.60014735	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	0	1					13.228	13.228	2	3.4706E-05	2590	DP1063-1	162.38	104.79			NaN	NaN	NaN	0	0	Median	961520	0	961520	746	314	695	1507	3316;3317	3316		2	9606
EIETYHNLLEGGQEDFESSGAGK	1	0	Unmodified	2509.1245	0.12449141	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.25	0.829	1	1	2			19.607	19.607	2;3	9.7179E-232	13100	DP1063-3	407.18	395.39		+	NaN	NaN	NaN	0	0	Median	337820000	337820000	0	747	251	696	1508;1509;1510;1511	3318;3319;3320;3321;3322;3323;3324;3325	3322		8	9606
EIFLSQPILLELEAPLK	1	0	Unmodified	1952.1234	0.12341618	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.86	0.35			1	6		27.707	27.707	2;3	4.9817E-07	20596	DP1063-3	187.78	122.5			NaN	NaN	NaN	0	0	Median	73441000	0	73441000	748	260;365;366	697	1512;1513;1514;1515;1516;1517;1518	3326;3327;3328;3329;3330;3331;3332;3333;3334;3335;3336	3326		11	9606
EIFNFVLK	1	0	Unmodified	1008.5644	0.56441796	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.904	21.904	2	0.013688	12633	DP1063-1	105.2	105.2			3.0109	2.3812	NaN	1	0	Median	4295000	1039500	3255400	749	420	698	1519	3337;3338	3337		2	9606
EIGYPVMIK	1	0	Oxidation (M)	1064.5576	0.55761802	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		18.156	18.156	2	0.020282	11095	DP1063-3	68.787	53.406			1.3006	0.96965	14.871	2	0	Median	165410000	72259000	93155000	750	110	699	1520;1521	3339;3340;3341;3342;3343	3340	86	5	9606
EIGYPVMIK	1	0	Unmodified	1048.5627	0.5627034	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.224	19.224	2	0.015419	12568	DP1063-3	85.064	45.811			1.4425	1.1583	NaN	1	0	Median	81796000	33482000	48313000	751	110	699	1522	3344;3345	3345		2	9606
EIIDLVLDR	0	1	Unmodified	1084.6128	0.61282471	413;605	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	4	1			1		1	21.999	21.999	2	2.255E-16	16338	DP1063-3	200.16	200.16			1.5045	1.2286	59.739	2	0	Median	326470000	111350000	215120000	752	413;605	700	1523;1524	3346;3347;3348;3349;3350;3351	3349		6	9606
EIKDILIQYDR	1	1	Unmodified	1404.7613	0.76127986	370	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					1	19.322	19.322	3	0.00042628	12530	DP1063-5	114.76	80.873			1.9305	1.6459	NaN	1	0	Median	25893000	8150800	17742000	753	370	701	1525	3352;3353;3354;3355	3354		4	9606
EILGTAQSVGCNVDGR	0	1	Unmodified	1674.7995	0.79953264	231	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.58	17.58	2	0.0021849	10218	DP1063-5	142.39	142.39			1.1704	0.87411	NaN	1	0	Median	27170000	12918000	14253000	754	231	702	1526	3356	3356		1	9606
EILIPVFK	1	0	Unmodified	957.5899	0.58990443	330	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	2	0		1				21.609	21.609	2	0.030438	14290	DP1063-2	89.369	46.455			NaN	NaN	NaN	0	0	Median	4283600	0	4283600	755	330	703	1527	3357	3357		1	9606
EILSEVER	0	1	Unmodified	973.50803	0.50802529	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			17.008	17.008	2	0.0008067	9540	DP1063-3	129.68	18.034			3.7743	2.8568	NaN	1	0	Median	36963000	9017800	27945000	756	304	704	1528	3358;3359	3359		2	9606
EIQELQSKPDR	1	1	Unmodified	1341.6888	0.6888432	338	P55196	MLLT4	Afadin	yes	yes	0	0	1	1	0	2					14.155	14.155	2;3	5.1113E-05	3607	DP1063-1	153.05	53.603			NaN	NaN	NaN	0	0	Median	2852400	0	2852400	757	338	705	1529;1530	3360;3361;3362	3361		3	9606
EIQVQHPAAK	1	0	Unmodified	1119.6037	0.60365701	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			13.149	13.149	2	0.00099426	4462	DP1063-3	113.41	113.41			3.5569	2.8562	NaN	1	0	Median	7912000	1539400	6372600	758	304	706	1531	3363;3364;3365	3365		3	9606
EITALAPSTMK	1	0	Oxidation (M)	1176.606	0.60602477	349;409;411	P60709;P63261;P68133;P68032;P63267;P62736	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	no	no	0	1	0	4	0				1		16.191	16.191	2	0.0041734	8075	DP1063-4	89.886	49.004			2.5994	1.7992	NaN	1	0	Median	94970000	26169000	68801000	759	349;409;411	707	1532	3366;3367;3368;3369	3367	439	4	9606
EIVHKPGPITLTVAK	2	0	Unmodified	1601.9505	0.95047762	573	Q92997	DVL3	Segment polarity protein dishevelled homolog DVL-3	yes	yes	0	0	1	2	0		1				16.399	16.399	3	0.0072263	7325	DP1063-2	85.45	66.781			NaN	NaN	NaN	0	0	Median	11397000	0	11397000	760	573	708	1533	3370;3371	3371		2	9606
EIVHLQAGQCGNQIGAK	1	0	Unmodified	1821.9156	0.91556545	414	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3.5	0.5			2	2		16.113	16.113	2;3	3.1862000000000003E-122	8246	DP1063-3	339.3	0			2.2115	1.7759	24.162	3	0	Median	187280000	57438000	129840000	761	414	709	1534;1535;1536;1537	3372;3373;3374;3375;3376;3377;3378;3379;3380;3381;3382;3383	3376		12	9606
EIVLADVIDNDSWR	0	1	Unmodified	1643.8155	0.81550028	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	4	0				1		23.069	23.069	2	2.3392E-39	16998	DP1063-4	252.97	206.17			2.2456	1.3999	NaN	1	0	Median	10137000	2594600	7542300	762	194	710	1538	3384;3385	3385		2	9606
EKAMTDTFTLQAHDQFSPFSSSSGR	1	1	Oxidation (M)	2790.2555	0.25552236	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	0		2				18.938	18.938	3;4	1.1456E-07	10668	DP1063-2	136.11	107.44			NaN	NaN	NaN	0	0	Median	25351000	25351000	0	763	595	711	1539;1540	3386;3387;3388	3386	710	3	9606
EKLEEEENLTR	1	1	Unmodified	1388.6783	0.6783381	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	1	2	0		1				15.088	15.088	2	0.026669	5514	DP1063-2	114.89	66.803			NaN	NaN	NaN	0	0	Median	0	0	0	764	547	712	1541	3389	3389		1	9606
EKPYFPIPEEYTFIQNVPLEDR	1	1	Unmodified	2723.3483	0.34828376	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				22.804	22.804	3	4.1545E-05	15794	DP1063-2	157.59	137.93			NaN	NaN	NaN	0	0	Median	24995000	0	24995000	765	429	713	1542	3390;3391;3392	3391		3	9606
EKQSDDEVYAPGLDIESSLK	2	0	Unmodified	2222.059	0.059037607	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		2				19.857	19.857	2	2.2655E-10	11922	DP1063-2	172.26	139.04			NaN	NaN	NaN	0	0	Median	0	0	0	766	513	714	1543;1544	3393;3394	3393		2	9606
ELAEDGYSGVEVR	0	1	Unmodified	1422.6627	0.66268803	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	3.33	1.7	1			1	1	17.531	17.531	2	5.7184E-13	9811	DP1063-4	195.51	169			2.3189	1.7991	4.6425	2	0	Median	95855000	28802000	67053000	767	200	715	1545;1546;1547	3395;3396;3397;3398;3399;3400;3401	3400		7	9606
ELAPAVSVLQLFCSSPK	1	0	Unmodified	1844.9706	0.97062071	681	Q9Y678;Q9UBF2	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	yes	no	0	0	0	2	0		1				24.639	24.639	2	0.0098291	18088	DP1063-2	96.734	65.094			NaN	NaN	NaN	0	0	Median	3272800	0	3272800	768	681	716	1548	3402;3403	3403		2	9606
ELAPYDENWFYTR	0	1	Unmodified	1702.7627	0.76273643	265	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	21.962	21.962	2	3.7284E-05	15734	DP1063-5	163.66	121.33			1.7147	1.2806	NaN	1	0	Median	11095000	3869400	7225600	769	265	717	1549	3404;3405	3404		2	9606
ELAQQIQK	1	0	Unmodified	956.5291	0.52909508	350	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	no	0	0	0	4	0				1		14.289	14.289	2	0.01111	5641	DP1063-4	110.36	17.101			2.6962	1.8662	NaN	1	0	Median	18710000	5356600	13353000	770	350	718	1550	3406;3407	3407		2	9606
ELASLSFSGDYSGTR	0	1	Unmodified	1588.7369	0.73691561	690				yes	yes	0	0	0	3	1		1		1		19.471	19.471	2	0.0027383	12463	DP1063-4	103.26	67.347	+		1.2268	0.87638	35.417	2	0	Median	123190000	57430000	65755000	771	690	719	1551;1552	3408;3409;3410;3411;3412	3412		5	9606
ELATVLSDQPGLLGPK	1	0	Unmodified	1636.9036	0.903587	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				20.964	20.964	2	0.0021368	13387	DP1063-2	105.03	105.03			0.72113	0.60331	NaN	1	0	Median	18087000	10282000	7804300	772	666	720	1553	3413;3414;3415	3413		3	9606
ELAVQIYEEAR	0	1	Unmodified	1319.6721	0.67213051	42	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			19.474	19.474	2	0.026833	13013	DP1063-3	80.755	34.626			NaN	NaN	NaN	0	0	Median	8042100	0	8042100	773	42	721	1554	3416;3417	3417		2	9606
ELEDATETADAMNR	0	1	Oxidation (M)	1580.6624	0.66243003	252	P35579	MYH9	Myosin-9	yes	yes	0	1	0	1	0	1					15.306	15.306	2	4.8923E-05	4902	DP1063-1	161.19	147.07			2.8005	2.2306	NaN	1	0	Median	5642100	1703100	3939000	774	252	722	1555	3418;3419;3420	3418	294	3	9606
ELEFYLR	0	1	Unmodified	968.49673	0.49673232	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	20.356	20.356	2	0.0276	13841	DP1063-5	103.29	41.289			1.8543	1.3849	NaN	1	0	Median	14961000	5254400	9706700	775	368	723	1556	3421	3421		1	9606
ELEVQHPAAK	1	0	Unmodified	1120.5877	0.58767259	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			13.509	13.509	2	2.1011E-06	4892	DP1063-3	150.36	95.75			3.789	3.0426	NaN	1	0	Median	9901800	2275800	7626000	776	319	724	1557	3422;3423;3424;3425	3424		4	9606
ELFESSTNNNK	1	0	Unmodified	1281.5837	0.58370943	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				15.684	15.684	2	0.0035396	6272	DP1063-2	109.48	63.88			NaN	NaN	NaN	0	0	Median	8301300	0	8301300	777	654	725	1558	3426;3427	3426		2	9606
ELFESSTNNNKDTK	2	0	Unmodified	1625.7533	0.75329395	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		1				14.415	14.415	2	0.00031942	4654	DP1063-2	178.71	107.26			NaN	NaN	NaN	0	0	Median	5316700	0	5316700	778	654	726	1559	3428;3429	3429		2	9606
ELFYEDR	0	1	Unmodified	970.43961	0.43961137	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		17.96	17.96	2	0.048079	10461	DP1063-4	90.777	63.656			0.93307	0.62565	NaN	1	0	Median	17941000	8180800	9759700	779	477	727	1560	3430	3430		1	9606
ELGIWEPLAVK	1	0	Unmodified	1253.702	0.70197407	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			22.199	22.199	2	0.0040172	16574	DP1063-3	104.01	61.149			NaN	NaN	NaN	0	0	Median	12054000	0	12054000	780	304	728	1561	3431;3432	3432		2	9606
ELHINLIPNKQDR	1	1	Unmodified	1588.8685	0.8685389	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	2	0		2				17.221	17.221	2;3	0.00086032	8285	DP1063-2	100.73	78.529			2.4468	2.3049	NaN	1	0	Median	44149000	11819000	32330000	781	132	729	1562;1563	3433;3434;3435;3436	3433		4	9606
ELIEIISGAAALD	0	0	Unmodified	1313.7078	0.70784731	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		24.822	24.822	2	5.1721E-05	18986	DP1063-4	141.2	92.913			NaN	NaN	NaN	0	0	Median	0	0	0	782	258	730	1564	3437;3438	3437		2	9606
ELIIGDR	0	1	Unmodified	814.45487	0.45486751	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.054	17.054	2	0.026984	9603	DP1063-3	111.28	17.115			1.9402	1.5115	NaN	1	0	Median	53719000	19032000	34686000	783	207	731	1565	3439;3440	3439		2	9606
ELIPNIPFQMLLR	0	1	Oxidation (M)	1598.8854	0.88543452	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.7	1		6	2	1	1	28.418	28.418	2;3	0.00012412	17345	DP1063-2	136.53	136.53			1.1735	0.90212	13.112	10	0	Median	964850000	436600000	528260000	784	154	732	1566;1567;1568;1569;1570;1571;1572;1573;1574;1575	3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451;3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467	3450	179	27	9606
ELIPNIPFQMLLR	0	1	Unmodified	1582.8905	0.8905199	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			25.128	25.128	2	1.217E-05	20156	DP1063-3	172.98	172.98			1.2551	0.9615	4.1522	2	0	Median	105400000	48024000	57373000	785	154	732	1576;1577	3468;3469;3470;3471;3472;3473;3474	3474		7	9606
ELISNASDALDK	1	0	Unmodified	1274.6354	0.63541065	135;169	P08238;P14625	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	no	no	0	0	0	2	0		1				17.744	17.744	2	0.00081823	9000	DP1063-2	140.49	140.49			2.723	2.2781	NaN	1	0	Median	73750000	24817000	48933000	786	135;169	733	1578	3475;3476;3477;3478	3475		4	9606
ELISNASDALDKIR	1	1	Unmodified	1543.8206	0.82058566	135;169	P08238;P14625	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	no	no	0	0	1	2	0		2				19.002	19.002	2;3	1.2856E-05	10769	DP1063-2	172.17	102.36			2.4316	2.2906	NaN	1	0	Median	104680000	10704000	93979000	787	135;169	734	1579;1580	3479;3480;3481;3482	3479		4	9606
ELISNSSDALDK	1	0	Unmodified	1290.6303	0.63032527	132	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	0	0	0	2	0		2				16.853	16.853	2	0.0083189	7829	DP1063-2	101.38	56.359			NaN	NaN	NaN	0	0	Median	0	0	0	788	132	735	1581;1582	3483;3484	3484		2	9606
ELISNSSDALDKIR	1	1	Unmodified	1559.8155	0.81550028	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	2	0		2				17.924	17.924	2;3	1.5068E-08	9230	DP1063-2	158.56	158.56			2.3182	2.1838	3.3772	2	0	Median	83329000	26502000	56827000	789	132	736	1583;1584	3485;3486;3487;3488;3489;3490;3491	3485		7	9606
ELLQSFDSALQSVK	1	0	Unmodified	1563.8144	0.81443765	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	2	0		1				22.303	22.303	2	0.003876	15170	DP1063-2	100.72	44.174			NaN	NaN	NaN	0	0	Median	4821800	0	4821800	790	314	737	1585	3492;3493	3492		2	9606
ELPDPQESIQR	0	1	Unmodified	1310.6466	0.64664404	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	0	2	0		1				17.172	17.172	2	0.049217	8167	DP1063-2	73.067	22		+	NaN	NaN	NaN	0	0	Median	11931000	11931000	0	791	23	738	1586	3494	3494		1	
ELPPDQAQYCIK	1	0	Unmodified	1460.697	0.69696505	253	P35609	ACTN2	Alpha-actinin-2	yes	yes	0	0	0	3	0			1			20.403	20.403	2	0.047606	14227	DP1063-3	74.173	5.5469			NaN	NaN	NaN	0	0	Median	21630000	21630000	0	792	253	739	1587	3495	3495		1	9606
ELQPQQQPR	0	1	Unmodified	1122.5782	0.57817054	338	P55196	MLLT4	Afadin	yes	yes	0	0	0	1.5	0.5	1	1				13.483	13.483	2	0.00053422	2868	DP1063-1	158.12	99.302			NaN	NaN	NaN	0	0	Median	5608500	0	5608500	793	338	740	1588;1589	3496;3497;3498;3499	3497		4	9606
ELQSQISDTSVVLSMDNSR	0	1	Oxidation (M)	2124.0005	0.0004768701	15	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	4	0				1		18.941	18.941	2	0.00088392	11818	DP1063-4	136.33	96.37		+	NaN	NaN	NaN	0	0	Median	3644800	0	3644800	794	15	741	1590	3500;3501	3501	17	2	9606
ELSDFISYLQR	0	1	Unmodified	1369.6878	0.68778057	233	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	3	0			1			23.108	23.108	2	0.0021799	17764	DP1063-3	106.2	60.197			2.3592	1.7952	NaN	1	0	Median	8028400	2775900	5252400	795	233	742	1591	3502;3503;3504	3503		3	9606
ELSDIAHR	0	1	Unmodified	939.47739	0.47739386	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		14.376	14.376	2	0.008568	5783	DP1063-4	107.32	60.272			NaN	NaN	NaN	0	0	Median	4142700	4142700	0	796	98	743	1592	3505;3506	3506		2	9606
ELSDLESAR	0	1	Unmodified	1018.4931	0.49310351	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					16.399	16.399	2	0.027911	6122	DP1063-1	75.043	42.689			2.0599	1.6199	NaN	1	0	Median	7370800	2191200	5179600	797	222	744	1593	3507;3508	3507		2	9606
ELSTTLNADEAVTR	0	1	Unmodified	1518.7526	0.75256567	247	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	2	0		1				17.689	17.689	2	0.0016291	8985	DP1063-2	110.08	52.488			1.6778	1.2176	NaN	1	0	Median	15037000	5569800	9466800	798	247	745	1594	3509;3510;3511;3512	3509		4	9606
ELTDEEAER	0	1	Unmodified	1090.4778	0.47784737	663	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		14.225	14.225	2	0.00040525	5557	DP1063-4	128.69	69.705			6.5958	4.0272	NaN	1	0	Median	8558500	1281300	7277200	799	663	746	1595	3513;3514	3514		2	9606
ELTNQQEASVER	0	1	Unmodified	1402.6688	0.66883604	486	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	2	0		1				14.637	14.637	2	0.0018634	4926	DP1063-2	107.83	73.299			2.7503	2.0543	NaN	1	0	Median	7970000	2224200	5745700	800	486	747	1596	3515;3516	3515		2	9606
ELTTEIDNNIEQISSYK	1	0	Unmodified	1995.9637	0.96368066	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	0	1					21.418	21.418	2	5.9447E-07	12089	DP1063-1	186.16	114.35		+	NaN	NaN	NaN	0	0	Median	6032300	6032300	0	801	19	748	1597	3517;3518	3517		2	9606
ELVSCSNCTDYQAR	0	1	Unmodified	1701.7087	0.70866872	309	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			2			16.001	16.001	2	0.0030504	8166	DP1063-3	102.4	70.068			NaN	NaN	NaN	0	0	Median	0	0	0	802	309	749	1598;1599	3519;3520	3519		2	9606
ELVSDANQHVK	1	0	Unmodified	1238.6255	0.62551466	234	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	3	0			2			13.774	13.774	2;3	0.015868	5248	DP1063-3	51.252	35.665			3.2615	2.619	NaN	1	0	Median	14190000	2320600	11870000	803	234	750	1600;1601	3521;3522	3521		2	9606
EMAQYASNITSVLCQFPSQQIANILDSHAATLNR	0	1	Oxidation (M)	3806.8356	0.83560715	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					24.634	24.634	3	1.1863999999999999E-19	15656	DP1063-1	143.47	143.47			1.3651	1.1048	NaN	1	0	Median	4331600	1759600	2572000	804	460	751	1602	3523;3524;3525;3526;3527	3524	567	5	9606
EMDEAATAEER	0	1	Oxidation (M)	1266.5034	0.5034102	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	1	0	1	0	1					13.325	13.325	2	0.0011447	2699	DP1063-1	106.88	78.706			3.4672	3.0612	NaN	1	0	Median	1494100	246410	1247700	805	442	752	1603	3528;3529	3528	550	2	9606
EMDRETLIDVAR	0	2	Oxidation (M)	1462.7086	0.70859237	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	1	1	3	0			1			16.958	16.958	3	0.00034585	9512	DP1063-3	101.35	101.35			4.0654	3.7169	NaN	1	0	Median	36012000	8512200	27500000	806	268	753	1604	3530	3530	322	1	9606
EMEAELEDER	0	1	Oxidation (M)	1265.5082	0.50816122	252	P35579	MYH9	Myosin-9	yes	yes	0	1	0	1	0	1					14.954	14.954	2	0.013733	4520	DP1063-1	96.331	66.955			NaN	NaN	NaN	0	0	Median	1481700	0	1481700	807	252	754	1605	3531;3532	3531	295	2	9606
EMEENFAVEAANYQDTIGR	0	1	Oxidation (M)	2201.9535	0.95352668	136	P08670	VIM	Vimentin	yes	yes	0	1	0	3	0			1			20.242	20.242	2	3.9369E-07	14017	DP1063-3	184.76	126.88			NaN	NaN	NaN	0	0	Median	11884000	0	11884000	808	136	755	1606	3533;3534	3533	145	2	9606
EMNPALGIDCLHK	1	0	Oxidation (M)	1512.7065	0.70648388	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	0	3	0			1			17.157	17.157	3	1.0419E-05	9730	DP1063-3	133.98	75.464			NaN	NaN	NaN	0	0	Median	14875000	0	14875000	809	301	756	1607	3535;3536	3535	353	2	9606
ENDPSVMR	0	1	Oxidation (M)	962.41274	0.4127447	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					13.226	13.226	2	0.03367	2501	DP1063-1	69.628	47.668			1.242	1.0542	NaN	1	0	Median	2418500	1108500	1309900	810	460	757	1608	3537	3537	568	1	9606
ENDPSVMR	0	1	Unmodified	946.41783	0.41783007	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.277	14.277	2	0.029734	3694	DP1063-1	85.064	60.141			1.2262	1.0236	NaN	1	0	Median	25109000	10943000	14166000	811	460	757	1609	3538	3538		1	9606
ENGMDVFR	0	1	Oxidation (M)	982.41783	0.41783007	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				15.696	15.696	2	0.039201	6268	DP1063-2	66.351	34.416			1.4722	1.2104	NaN	1	0	Median	105650000	39794000	65856000	812	154	758	1610	3539	3539	180	1	9606
ENMAYTVECLR	0	1	Oxidation (M)	1400.6064	0.60643548	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	4	0				1		17.398	17.398	2	0.0050094	9719	DP1063-4	110.14	66.623			NaN	NaN	NaN	0	0	Median	3108600	0	3108600	813	198	759	1611	3540;3541	3541	251	2	9606
ENNVDAVHPGYGFLSER	0	1	Unmodified	1902.886	0.88603946	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.56	1.07		2	2	3	2	18.656	18.656	2;3	3.5189E-69	10296	DP1063-2	286.88	286.88			1.4302	1.1194	15.749	6	0	Median	849460000	361540000	487920000	814	154	760	1612;1613;1614;1615;1616;1617;1618;1619;1620	3542;3543;3544;3545;3546;3547;3548;3549;3550;3551;3552;3553;3554;3555;3556;3557;3558;3559;3560;3561;3562;3563;3564;3565	3548		24	9606
ENPFMLLEAER	0	1	Oxidation (M)	1363.6442	0.6442012	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	0	2	0		4				28.256	28.256	2	0.023709	14550	DP1063-2	84.31	50.104			NaN	NaN	NaN	0	0	Median	112900000	0	112900000	815	524	761	1621;1622;1623;1624	3566;3567;3568;3569	3566	662	4	9606
ENPFMLLEAERR	0	2	Oxidation (M)	1519.7453	0.74531222	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	1	2	0		1				20.083	20.083	3	1.6161E-06	12213	DP1063-2	150.09	97.303			NaN	NaN	NaN	0	0	Median	68030000	0	68030000	816	524	762	1625	3570;3571	3570	662	2	9606
ENPFMLLEAERR	0	2	Unmodified	1503.7504	0.7503976	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	4	0				1		20.465	20.465	3	0.00016431	13834	DP1063-4	128.88	73.622			NaN	NaN	NaN	0	0	Median	4137700	0	4137700	817	524	762	1626	3572;3573	3572		2	9606
ENPSEEAQNLVEFTDEEGYGR	0	1	Unmodified	2412.0353	0.035342051	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			2			21.642	21.642	2;3	3.8576E-129	15857	DP1063-3	323.16	323.16			1.0194	0.75584	24.421	2	0	Median	38434000	18346000	20088000	818	456	763	1627;1628	3574;3575;3576;3577;3578;3579	3576		6	9606
ENVFQEHQTLK	1	0	Unmodified	1371.6783	0.67827852	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	2	0		1				15.977	15.977	2	0.047873	6695	DP1063-2	73.841	29.638			NaN	NaN	NaN	0	0	Median	0	0	0	819	488	764	1629	3580	3580		1	9606
EPPMHWPPEVLNK	1	0	Oxidation (M)	1588.7708	0.77079869	694				yes	yes	0	1	0	2	0		1				19.218	19.218	2	0.014733	11133	DP1063-2	89.247	39.053	+		NaN	NaN	NaN	0	0	Median	3643600	3643600	0	820	694	765	1630	3581	3581	795	1	9606
EPQVYVLAPPQEELSK	1	0	Unmodified	1825.9462	0.9461801	9	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3	0.816		1	1	1		20.059	20.059	2	0.00047631	12251	DP1063-2	174.72	139.2		+	NaN	NaN	NaN	0	0	Median	71465000	71465000	0	821	9	766	1631;1632;1633	3582;3583;3584;3585;3586;3587	3583		6	
EQAQILDNYTLK	1	0	Unmodified	1434.7355	0.73545904	688				yes	yes	0	0	0	3	0			1			17.077	17.077	2	0.00263	9641	DP1063-3	94.309	50.675	+		NaN	NaN	NaN	0	0	Median	16908000	16908000	0	822	688	767	1634	3588	3588		1	9606
EQGVLSFWR	0	1	Unmodified	1120.5665	0.56654322	108;159	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	3.33	1.7	1			1	1	21.668	21.668	2	3.2999E-10	15288	DP1063-4	162.25	162.25			1.878	1.4398	6.3639	3	0	Plateau	67529000	23064000	44465000	823	108;159	768	1635;1636;1637	3589;3590;3591;3592;3593;3594;3595;3596;3597;3598;3599	3596		11	9606
EQIVPKPEEEVAQK	2	0	Unmodified	1622.8516	0.85155143	184	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	15.527	15.527	2	0.036736	7705	DP1063-5	109.39	57.861			NaN	NaN	NaN	0	0	Median	3142200	0	3142200	824	184	769	1638	3600	3600		1	9606
EQLAIAEFAR	0	1	Unmodified	1146.6033	0.60332266	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			19.894	19.894	2	0.00065853	13483	DP1063-3	152.06	112.81			NaN	NaN	NaN	0	0	Median	41056000	0	41056000	825	179	770	1639	3601;3602	3601		2	9606
EQLDNQLDAYMSK	1	0	Oxidation (M)	1569.6981	0.69808726	672	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		17.589	17.589	2	0.0031011	9920	DP1063-4	109.39	59.923			NaN	NaN	NaN	0	0	Median	7046100	0	7046100	826	672	771	1640	3603;3604	3603	781	2	9606
EQQHVMEELFQSSFR	0	1	Oxidation (M)	1909.8629	0.86286118	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					18.623	18.623	3	0.0041645	8686	DP1063-1	62.357	47.428			2.2148	1.7532	NaN	1	0	Median	6418000	2232400	4185600	827	420	772	1641	3605;3606	3605	525	2	9606
EQQIVIQSSGGLSKDDIENMVK	2	0	Oxidation (M)	2433.2057	0.20571862	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			18.074	18.074	3	3.8263E-06	10947	DP1063-3	94.911	94.911			1.3647	1.2244	NaN	1	0	Median	23869000	8738100	15131000	828	263	773	1642	3607;3608	3607	315	2	9606
EQSILELGSLLAK	1	0	Unmodified	1399.7922	0.79224564	36	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	4	0				1		23.255	23.255	2	0.01006	17203	DP1063-4	89.548	38.202			NaN	NaN	NaN	0	0	Median	1172800	0	1172800	829	36	774	1643	3609	3609		1	9606
EQSQLTATQTR	0	1	Unmodified	1261.6262	0.62624295	536	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					13.869	13.869	2	6.5672E-07	3269	DP1063-1	166.34	133.5			2.3785	1.9625	NaN	1	0	Median	3420100	950190	2470000	830	536	775	1644	3610;3611;3612;3613;3614	3611		5	9606
EQVANSAFVER	0	1	Unmodified	1248.6099	0.6098646	135	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2.5	1.12	1	1	1	1		16.227	16.227	2	5.3786E-14	7060	DP1063-2	202.96	135.47			2.5946	2.1582	NaN	1	0	Median	127390000	33366000	94020000	831	135	776	1645;1646;1647;1648	3615;3616;3617;3618;3619;3620;3621;3622	3617		8	9606
EQVNDLFSR	0	1	Unmodified	1106.5356	0.53563702	418	P78347;Q86UP8;Q6EKJ0	GTF2I;GTF2IRD2;GTF2IRD2B	General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B	yes	no	0	0	0	2	0		1				18.481	18.481	2	4.3352E-05	10058	DP1063-2	141.2	103.38			0.90557	0.67826	NaN	1	0	Median	32962000	16393000	16568000	832	418	777	1649	3623;3624	3624		2	9606
ERDFTSLENTVEER	0	2	Unmodified	1723.8013	0.80130678	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			2			18.178	18.178	2;3	0.001487	11137	DP1063-3	172.33	117.56			2.172	1.9859	NaN	1	0	Median	36932000	8063500	28869000	833	449	778	1650;1651	3625;3626	3626		2	9606
EREEFLIPIYHQVAVQFADLHDTPGR	0	2	Unmodified	3079.5516	0.55156844	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	3.25	0.829		1	1	2		22.239	22.239	4;5	1.9611E-11	15076	DP1063-2	123.85	110.7			1.1413	1.0628	30.773	3	0	Median	61284000	34820000	26463000	834	460	779	1652;1653;1654;1655	3627;3628;3629;3630;3631	3627		4	9606
ERPGEQSEVAQLIQQTLEQER	0	2	Unmodified	2467.2303	0.23029389	596	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				22.387	22.387	3	7.8021E-05	15300	DP1063-2	139.69	99.697			NaN	NaN	NaN	0	0	Median	10673000	0	10673000	835	596	780	1656	3632	3632		1	9606
ESKEEETSIDVAGKPNEVTK	3	0	Unmodified	2189.0699	0.069936644	332	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	2	4	0				1		14.931	14.931	3	0.055727	6508	DP1063-4	63.447	37.576			NaN	NaN	NaN	0	0	Median	0	0	0	836	332	781	1657	3633	3633		1	9606
ESLCQAALGLILK	1	0	Unmodified	1414.7854	0.78538612	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		24.278	24.278	2	0.00069908	18405	DP1063-4	113.62	91.293			1.4933	1.2345	8.3769	3	0	Plateau	286640000	114940000	171690000	837	595	782	1658;1659;1660;1661	3634;3635;3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646	3646		13	9606
ESLEALLQR	0	1	Unmodified	1057.5768	0.57677356	80	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				20.487	20.487	2	0.052277	12777	DP1063-2	84.498	31.782			NaN	NaN	NaN	0	0	Median	0	0	0	838	80	783	1662	3647	3647		1	9606
ESLIDGIKR	1	1	Unmodified	1029.5819	0.58185894	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	1	4	0				1		16.647	16.647	2	0.051507	8703	DP1063-4	81.548	0			NaN	NaN	NaN	0	0	Median	3835400	0	3835400	839	201	784	1663	3648	3648		1	9606
ESNCYDPER	0	1	Unmodified	1168.4455	0.44550139	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					14.242	14.242	2	0.023242	3696	DP1063-1	78.264	69.023			1.637	1.3781	NaN	1	0	Median	2673800	1083100	1590700	840	428	785	1664	3649	3649		1	9606
ESQTQDNITVR	0	1	Unmodified	1289.6212	0.62115757	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				14.676	14.676	2	0.0041877	4967	DP1063-2	102.06	73.335			NaN	NaN	NaN	0	0	Median	5890500	0	5890500	841	569	786	1665	3650;3651	3650		2	9606
ESTGAQVQVAGDMLPNSTER	0	1	Oxidation (M)	2104.9695	0.96951109	508;507	Q15365;Q15366;P57721	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	no	no	0	1	0	4	0				2		17.009	17.009	2;3	7.04E-12	9138	DP1063-4	189.33	148.96			2.8322	1.817	11.625	2	0	Median	25626000	6242500	19384000	842	507;508	787	1666;1667	3652;3653;3654;3655;3656	3653	644	5	9606
ESTLHLVLR	0	1	Unmodified	1066.6135	0.61349341	403	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	1.41	1	1	1	1	1	17.522	17.522	2	3.3542E-16	8755	DP1063-2	195.81	151.06			4.7018	3.8331	68.796	4	0	Linear	140970000	29833000	111130000	843	403	788	1668;1669;1670;1671;1672	3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667;3668	3661		12	9606
ESTYQGHHTPPVQK	1	0	Unmodified	1607.7692	0.76921879	92	P00414	MT-CO3	Cytochrome c oxidase subunit 3	yes	yes	0	0	0	1	0	1					12.721	12.721	3	0.00094954	2001	DP1063-1	89.46	73.915			1.5918	1.3939	NaN	1	0	Median	1586700	559340	1027300	844	92	789	1673	3669;3670	3669		2	9606
ESVFTVEGGHR	0	1	Unmodified	1216.5836	0.58364985	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		15.86	15.86	2	0.0086109	7744	DP1063-4	87.913	60.61			1.5747	0.97007	NaN	1	0	Median	9237800	2891700	6346100	845	598	790	1674	3671;3672	3672		2	9606
ESVLGHMALK	1	0	Oxidation (M)	1099.5696	0.56957969	683				yes	yes	0	1	0	1	0	1					17.586	17.586	2	0.017357	7348	DP1063-1	66.073	32.695	+		1.0952	0.85284	NaN	1	0	Median	7016700	3130500	3886300	846	683	791	1675	3673	3673	789	1	9606
ESVSTASDQPSHSLER	0	1	Unmodified	1728.7915	0.79147037	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				14.348	14.348	3	0.00098311	4571	DP1063-2	108.66	84.83			NaN	NaN	NaN	0	0	Median	5267600	0	5267600	847	558	792	1676	3674;3675	3674		2	9606
ESYSIYVYK	1	0	Unmodified	1150.5546	0.55464113	126	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	5	0					1	18.486	18.486	2	0.0033034	11396	DP1063-5	113.41	113.41			1.6624	1.4072	NaN	1	0	Median	60051000	24290000	35761000	848	126	793	1677	3676;3677;3678;3679	3679		4	9606
ESYSVYVYK	1	0	Unmodified	1136.539	0.53899107	66	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	0	5	0					1	17.77	17.77	2	0.0015996	10449	DP1063-5	122.18	122.18			1.6402	1.3884	NaN	1	0	Median	94460000	36890000	57569000	849	66	794	1678	3680;3681;3682;3683	3682		4	9606
ETAENYLGHTAK	1	0	Unmodified	1332.631	0.63099397	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			2			14.979	14.979	2;3	0.0022622	6763	DP1063-3	80.245	63.222			1.4401	1.1564	NaN	1	0	Median	17055000	7206100	9848700	850	263	795	1679;1680	3684;3685	3684		2	9606
ETFLTSPEELYR	0	1	Unmodified	1483.7195	0.71947463	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		20.646	20.646	2	0.059856	14142	DP1063-4	59.426	59.426			1.2854	0.7996	NaN	1	0	Median	9968600	4712000	5256600	851	86	796	1681	3686	3686		1	9606
ETGEHLVHVK	1	0	Unmodified	1147.5986	0.59857163	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				13.212	13.212	2	0.0002901	2604	DP1063-1	145.63	97.976			NaN	NaN	NaN	0	0	Median	4486600	0	4486600	852	190	797	1682;1683	3687;3688;3689	3687		3	9606
ETGEHLVHVKK	2	0	Unmodified	1275.6935	0.69353465	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					12.608	12.608	3	0.0379	1897	DP1063-1	58.592	31.443			NaN	NaN	NaN	0	0	Median	1215900	0	1215900	853	190	798	1684	3690	3690		1	9606
ETGVDLTKDNMALQR	1	1	Oxidation (M)	1705.8305	0.83049842	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			16.223	16.223	2	0.0010137	8537	DP1063-3	128.88	108.68			1.6202	1.4695	NaN	1	0	Median	11694000	4489100	7205000	854	263	799	1685	3691;3692;3693	3693	316	3	9606
ETLLNSATTSLNSK	1	0	Unmodified	1477.7624	0.76240208	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			18.397	18.397	2	0.011273	11491	DP1063-3	88.803	50.049			NaN	NaN	NaN	0	0	Median	11671000	0	11671000	855	320	800	1686	3694	3694		1	9606
ETLPAEQDLTTK	1	0	Unmodified	1344.6773	0.67727546	208	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	4	0				1		17.11	17.11	2	0.0051369	9227	DP1063-4	94.692	46.823			1.0818	0.7488	NaN	1	0	Median	8847100	4221500	4625600	856	208	801	1687	3695;3696	3695		2	9606
ETNLDSLPLVDTHSK	1	0	Unmodified	1667.8366	0.83662965	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			18.583	18.583	3	0.037802	11785	DP1063-3	64.04	9.1687			NaN	NaN	NaN	0	0	Median	7684700	0	7684700	857	136	802	1688	3697	3697		1	9606
ETQALILAPTR	0	1	Unmodified	1211.6874	0.68738664	264	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	4	0				1		18.172	18.172	2	0.003053	10813	DP1063-4	99.788	52.601			0.96284	0.59494	NaN	1	0	Median	9458800	5163800	4295000	858	264	803	1689	3698;3699	3698		2	9606
ETQAQYQALER	0	1	Unmodified	1335.6419	0.64189301	596	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	0	2	0		1				15.762	15.762	2	3.4112E-05	6394	DP1063-2	142.98	76.29			NaN	NaN	NaN	0	0	Median	17032000	0	17032000	859	596	804	1690	3700;3701	3701		2	9606
ETQSQLETER	0	1	Unmodified	1219.5681	0.56805936	173	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	0	1					14.013	14.013	2	6.5166E-06	3432	DP1063-1	143.37	50.23			2.0569	1.7498	NaN	1	0	Median	2353000	889790	1463200	860	173	805	1691	3702;3703;3704	3703		3	9606
ETQTECEWTVDTSK	1	0	Unmodified	1712.7199	0.71994491	173	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	0	1					17.38	17.38	2	0.016991	7117	DP1063-1	84.188	47.504			NaN	NaN	NaN	0	0	Median	0	0	0	861	173	806	1692	3705	3705		1	9606
ETSMVHELNR	0	1	Oxidation (M)	1230.5663	0.56628523	361	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	1	0	1	0	2					13.182	13.182	2;3	0.0003562	2500	DP1063-1	101.65	64.138			1.8835	1.5817	6.2685	2	0	Median	7949900	2591200	5358600	862	361	807	1693;1694	3706;3707;3708;3709;3710;3711	3707	456	6	9606
ETVSEESNVLCLSK	1	0	Unmodified	1593.7556	0.75560214	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	3	1		1		1		18.556	18.556	2	3.7665E-09	10183	DP1063-2	191.33	131.27			2.7876	2.3322	NaN	1	0	Median	55900000	12243000	43656000	863	165	808	1695;1696	3712;3713;3714;3715;3716	3714		5	9606
ETYGDMADCCEK	1	0	Oxidation (M)	1493.5109	0.51088012	14	CON__P02769			yes	yes	0	1	0	2.75	1.48	1	1	1		1	13.968	13.968	2	0.010675	4041	DP1063-2	94.465	85.033		+	NaN	NaN	NaN	0	0	Median	217330000	217330000	0	864	14	809	1697;1698;1699;1700	3717;3718;3719;3720;3721;3722;3723	3720	13	7	9606
ETYGDMADCCEK	1	0	Unmodified	1477.516	0.51596549	14	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1		15.779	15.779	2	0.0019212	7783	DP1063-3	118.4	110.6		+	NaN	NaN	NaN	0	0	Median	88361000	88361000	0	865	14	809	1701;1702;1703;1704	3724;3725;3726;3727;3728;3729;3730;3731	3729		8	9606
ETYGDMADCCEKQEPER	1	1	Oxidation (M)	2132.8085	0.8085187	14	CON__P02769			yes	yes	0	1	1	2.33	0.943	1		2			14.161	14.161	2;3	0.00046394	5651	DP1063-3	153.2	153.2		+	NaN	NaN	NaN	0	0	Median	22288000	22288000	0	866	14	810	1705;1706;1707	3732;3733;3734;3735;3736;3737	3735	13	6	9606
ETYGDMADCCEKQEPER	1	1	Unmodified	2116.8136	0.81360408	14	CON__P02769			yes	yes	0	0	1	3	0			1			15.505	15.505	3	0.03759	7513	DP1063-3	120.32	99.367		+	NaN	NaN	NaN	0	0	Median	0	0	0	867	14	810	1708	3738	3738		1	9606
ETYGDMADCCEKQEPERNECFLSHK	2	1	Oxidation (M)	3148.2631	0.26306863	14	CON__P02769			yes	yes	0	1	2	3	0			1			15.583	15.583	4	0.028425	7643	DP1063-3	50.189	41.985		+	NaN	NaN	NaN	0	0	Median	8959000	8959000	0	868	14	811	1709	3739;3740	3740	13	2	9606
EVAAFAQFGSDLDAATQQLLSR	0	1	Unmodified	2337.1601	0.16008906	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			25.692	25.692	2	3.2709E-63	20812	DP1063-3	258.41	258.41			1.3564	1.0551	NaN	1	0	Median	6254600	2583100	3671600	869	207	812	1710	3741;3742	3741		2	9606
EVATNSELVQSGK	1	0	Unmodified	1360.6834	0.68342347	12	CON__P02533;P02533;CON__Q9QWL7;CON__Q04695;Q04695	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	yes	no	0	0	0	2.75	1.09	1		2	1		15.158	15.158	2	7.9367E-08	7010	DP1063-3	167.12	88.599		+	NaN	NaN	NaN	0	0	Median	11254000	11254000	0	870	12	813	1711;1712;1713;1714	3743;3744;3745;3746;3747;3748	3745		6	9606
EVCGFAPYER	0	1	Unmodified	1226.539	0.53900784	671	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	5	0					1	17.779	17.779	2	0.044877	10543	DP1063-5	68.846	49.493			1.3952	1.042	NaN	1	0	Median	14381000	6567300	7814000	871	671	814	1715	3749	3749		0	9606
EVDEQMLNVQNK	1	0	Oxidation (M)	1461.677	0.67695789	414;129;480	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	4	0.816			1	1	1	15.468	15.468	2	1.8683E-13	7192	DP1063-4	195.57	148.62			2.033	1.7183	14.082	3	0	Median	178720000	57932000	120780000	872	129;414;480	815	1716;1717;1718	3750;3751;3752;3753;3754;3755;3756;3757;3758;3759;3760;3761;3762	3756	123	13	9606
EVDEQMLNVQNK	1	0	Unmodified	1445.682	0.68204326	414;129;480	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.5	0.5			1	1		17.252	17.252	2	2.3635E-13	9892	DP1063-3	199.7	134.43			2.2144	1.7781	NaN	1	0	Median	63748000	19873000	43875000	873	129;414;480	815	1719;1720	3763;3764;3765;3766;3767	3764		5	9606
EVFFMNTQSIVQLVQR	0	1	Oxidation (M)	1953.9982	0.99823245	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.707	5	2	1			22.914	22.914	2;3	1.1657E-53	15633	DP1063-2	258.01	237.9			1.3396	1.1573	9.408	3	0	Plateau	268120000	114290000	153830000	874	460	816	1721;1722;1723;1724;1725;1726;1727;1728	3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791	3790	569	24	9606
EVFFMNTQSIVQLVQR	0	1	Unmodified	1938.0033	0.003317824	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	4	0				1		24.058	24.058	2	0.032267	18135	DP1063-4	74.698	35.118			NaN	NaN	NaN	0	0	Median	0	0	0	875	460	816	1729	3792	3792		1	9606
EVFSMAGVVVR	0	1	Oxidation (M)	1208.6223	0.62234354	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	4	0				1		17.999	17.999	2	0.049667	10523	DP1063-4	78.113	45.114			NaN	NaN	NaN	0	0	Median	3259900	3259900	0	876	323	817	1730	3793	3793	394	1	9606
EVGKDVSDEKLR	2	1	Unmodified	1373.7151	0.71505795	71	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	2	4	0				1		13.564	13.564	3	0.0026017	4783	DP1063-4	86.911	47.763			1.9349	2.0005	NaN	1	0	Median	3352500	1519500	1833000	877	71	818	1731	3794;3795	3795		2	9606
EVIELPLTNPELFQR	0	1	Unmodified	1796.9672	0.96724989	381	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	4	0				1		23.143	23.143	2	0.0025548	17009	DP1063-4	138.63	138.63			1.5085	1.0195	NaN	1	0	Median	5018700	2070200	2948600	878	381	819	1732	3796;3797;3798;3799	3796		4	9606
EVIINSR	0	1	Unmodified	829.46577	0.46576654	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		14.69	14.69	2	4.8191E-10	6366	DP1063-3	167.82	43.836			1.4669	1.3628	12.273	3	0	Plateau	645210000	259090000	386120000	879	110	820	1733;1734;1735	3800;3801;3802;3803;3804;3805;3806;3807;3808;3809	3806		10	9606
EVLCPESQSPNGVR	0	1	Unmodified	1570.741	0.74095513	490	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				16.124	16.124	2	0.0041844	6904	DP1063-2	99.522	52.262			NaN	NaN	NaN	0	0	Median	0	0	0	880	490	821	1736	3810	3810		1	9606
EVLDQVCYR	0	1	Unmodified	1180.5547	0.55465791	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	3	0.816		1	1	1		17.371	17.371	2	1.1019E-07	8550	DP1063-2	150.84	111.19			1.4393	1.1527	16.065	3	0	Plateau	94101000	38618000	55483000	881	513	822	1737;1738;1739	3811;3812;3813;3814;3815;3816;3817;3818	3814		8	9606
EVLDSFLDLAR	0	1	Unmodified	1276.6663	0.66631685	515	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	3	0			1			23.353	23.353	2	6.7136E-07	18072	DP1063-3	166.09	131.92			1.6065	1.1889	NaN	1	0	Median	11014000	3599800	7413700	882	515	823	1740	3819;3820;3821;3822	3821		4	9606
EVPAVPETLK	1	0	Unmodified	1081.6019	0.60192568	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		17.428	17.428	2	0.03032	9714	DP1063-4	66.299	32.21			1.2239	0.84715	NaN	1	0	Median	12026000	5505400	6520400	883	182	824	1741	3823	3823		1	9606
EVPGPDCR	0	1	Unmodified	928.40727	0.40726539	520	Q16658	FSCN1	Fascin	yes	yes	0	0	0	3	0			1			13.772	13.772	2	0.037556	5218	DP1063-3	80.229	51.806			2.1828	1.6873	NaN	1	0	Median	6715200	2209800	4505400	884	520	825	1742	3824	3824		1	9606
EVQTNDLKEVVNK	2	0	Unmodified	1514.794	0.79403655	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				2		15.858	15.858	2;3	0.00068703	7743	DP1063-4	158.56	110.86			1.9526	2.0278	NaN	1	0	Median	15685000	3704500	11981000	885	355	826	1743;1744	3825;3826;3827;3828	3827		4	9606
EVSFQSTGESEWK	1	0	Unmodified	1512.6733	0.67325272	448	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4.5	0.5				1	1	18.246	18.246	2	4.0109E-05	11034	DP1063-5	136.52	54.99			NaN	NaN	NaN	0	0	Median	11955000	0	11955000	886	448	827	1745;1746	3829;3830;3831;3832	3831		4	9606
EVSSATNALR	0	1	Unmodified	1046.5356	0.53563702	139	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	4	0				1		14.713	14.713	2	0.013182	6208	DP1063-4	80.438	41.646			1.7497	1.0779	NaN	1	0	Median	8164100	4422600	3741500	887	139	828	1747	3833;3834	3834		2	9606
EVVDPTKCNLLAEK	2	0	Unmodified	1614.8287	0.8287075	18	CON__P12763			yes	yes	0	0	1	3	0			2			17.697	17.697	2;3	0.00088828	10484	DP1063-3	152.96	73.469		+	NaN	NaN	NaN	0	0	Median	21461000	21461000	0	888	18	829	1748;1749	3835;3836;3837;3838	3835		4	9606
EVVEEAENGR	0	1	Unmodified	1130.5204	0.52038089	119	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	0	5	0					3	14.116	14.116	2	0.0024614	6033	DP1063-5	113.62	60.271			NaN	NaN	NaN	0	0	Median	3019200	3019200	0	889	119	830	1750;1751;1752	3839;3840;3841;3842	3840		4	9606
EVYQQQQYGSGGR	0	1	Unmodified	1498.6801	0.68006943	600	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	4	0				1		14.645	14.645	2	0.0007453	6077	DP1063-4	138.76	93.604			2.3319	1.498	NaN	1	0	Median	6552100	2554800	3997300	890	600	831	1753	3843;3844;3845;3846;3847	3843		5	9606
EYEAEGIAK	1	0	Unmodified	1008.4764	0.47639081	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		15.016	15.016	2	1.3848E-07	6807	DP1063-3	148.04	107.26			1.4706	1.0964	8.2397	2	0	Median	635320000	253090000	382230000	891	624	832	1754;1755	3848;3849;3850;3851;3852;3853;3854	3849		7	9606
EYEAEGIAKDGAK	2	0	Unmodified	1379.6569	0.65687437	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			14.231	14.231	2;3	7.999E-20	5789	DP1063-3	215.06	162.81			1.3035	1.1695	12.502	2	0	Median	23072000	10279000	12793000	892	624	833	1756;1757	3855;3856;3857;3858	3857		4	9606
EYEATLEECCAK	1	0	Unmodified	1501.6065	0.60649506	14	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.343	16.343	2	6.7363E-42	8559	DP1063-3	264.3	231.11		+	NaN	NaN	NaN	0	0	Median	332840000	332840000	0	893	14	834	1758;1759;1760;1761	3859;3860;3861;3862;3863;3864;3865;3866	3863		8	9606
EYEATLEECCAKDDPHACYSTVFDK	2	0	Unmodified	3037.2416	0.24158813	14	CON__P02769			yes	yes	0	0	1	2.25	0.829	1	1	2			18.308	18.308	3;4	3.3186E-09	11257	DP1063-3	166.01	154.89		+	NaN	NaN	NaN	0	0	Median	127340000	127340000	0	894	14	835	1762;1763;1764;1765	3867;3868;3869;3870;3871;3872;3873;3874	3871		8	9606
EYFSWEGAFQHVGK	1	0	Unmodified	1683.7682	0.76815616	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3.5	0.5			2	2		20.866	20.866	2;3	3.4496E-05	14293	DP1063-4	177.57	154.19			2.4103	1.6683	NaN	1	0	Median	33440000	4348000	29092000	895	218	836	1766;1767;1768;1769	3875;3876;3877;3878;3879;3880;3881;3882	3881		8	9606
EYLTSHLEIR	0	1	Unmodified	1259.651	0.65100113	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				17.761	17.761	3	0.0030713	9107	DP1063-2	73.887	61.08			1.2013	0.86969	NaN	1	0	Median	21558000	8185400	13373000	896	666	837	1770	3883;3884	3884		2	9606
EYQTIEDK	1	0	Unmodified	1024.4713	0.47130543	27	CON__Q3SZR3			yes	yes	0	0	0	4	0				1		14.395	14.395	2	0.039062	5767	DP1063-4	84.916	47.851		+	NaN	NaN	NaN	0	0	Median	4616900	4616900	0	897	27	838	1771	3885	3885		1	
EYVRPGLPVTFIDEVDSEEAPQAAK	1	1	Unmodified	2759.3654	0.36539038	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.75	0.829		2	1	1		21.535	21.535	2;3	1.4067E-25	14111	DP1063-2	213.71	201.97			NaN	NaN	NaN	0	0	Median	204830000	0	204830000	898	524	839	1772;1773;1774;1775	3886;3887;3888;3889;3890;3891;3892;3893;3894;3895	3886		10	9606
FAAATGATPIAGR	0	1	Unmodified	1202.6408	0.6407708	0	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		16.35	16.35	2	0.00056921	8340	DP1063-4	151.22	151.22			1.7986	1.2414	NaN	1	0	Median	22502000	8594200	13907000	899	0	840	1776	3896;3897;3898;3899	3896		4	9606
FAAGHDAEGSHSHVHFDEK	1	0	Unmodified	2076.9038	0.90381479	615	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					1	13.52	13.52	5	0.041795	5310	DP1063-5	48.555	42.545			NaN	NaN	NaN	0	0	Median	10212000	0	10212000	900	615	841	1777	3900;3901	3900		2	9606
FACHSASLTVR	0	1	Unmodified	1247.6081	0.60809046	505	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	3	0			2			15.03	15.03	3	0.0039293	6856	DP1063-3	86.189	58.275			NaN	NaN	NaN	0	0	Median	29676000	0	29676000	901	505	842	1778;1779	3902;3903;3904	3902		3	9606
FADLSEAANR	0	1	Unmodified	1092.52	0.51998696	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3.5	0.5			1	1		16.699	16.699	2	0.0010479	8749	DP1063-4	158.07	108.63			NaN	NaN	NaN	0	0	Median	22569000	0	22569000	902	136	843	1780;1781	3905;3906;3907;3908	3907		4	9606
FAEAFEAIPR	0	1	Unmodified	1149.5819	0.58185893	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			19.679	19.679	2	0.00044438	13206	DP1063-3	122.13	86.866			4.0616	3.077	NaN	1	0	Median	37385000	5682300	31703000	903	319	844	1782	3909;3910	3909		2	9606
FAEALGSTEAK	1	0	Unmodified	1122.5557	0.55570376	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				16.017	16.017	2	6.8292E-05	6765	DP1063-2	136.52	87.073			NaN	NaN	NaN	0	0	Median	12305000	12305000	0	904	418	845	1783	3911;3912	3912		2	9606
FAIYETVR	0	1	Unmodified	997.52328	0.52328142	643	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	4	0				1		18.548	18.548	2	0.025427	11259	DP1063-4	92.47	44.555			NaN	NaN	NaN	0	0	Median	3441300	0	3441300	905	643	846	1784	3913;3914	3914		2	9606
FANPFPAAVR	0	1	Unmodified	1088.5767	0.57671398	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	19.435	19.435	2	0.0017604	12751	DP1063-3	108.46	108.46			1.1743	1.0418	14.606	3	0	Plateau	325760000	152750000	173010000	906	111	847	1785;1786;1787	3915;3916;3917;3918;3919;3920;3921;3922;3923;3924	3916		10	9606
FAQALGLTEAVK	1	0	Unmodified	1246.6921	0.69213767	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				19.051	19.051	2	0.0009378	10803	DP1063-2	113.93	74.622			0.96949	0.81109	NaN	1	0	Median	40030000	19345000	20685000	907	418	848	1788	3925;3926;3927;3928	3926		4	9606
FAQHGTFEYEYSQR	0	1	Unmodified	1761.7747	0.7746981	199	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		3				16.854	16.854	2;3	2.7629E-28	7815	DP1063-2	254.07	214.2			2.4226	1.8078	13.233	2	0	Median	63885000	18141000	45744000	908	199	849	1789;1790;1791	3929;3930;3931;3932;3933;3934	3930		6	9606
FASFIDK	1	0	Unmodified	826.4225	0.42250475	22;15;20;30	CON__P35908v2;P35908;CON__P35908;CON__Q01546;Q01546;CON__Q6NXH9;CON__P07744;CON__Q5XKE5;Q5XKE5;Q7RTS7;P12035;CON__Q7RTS7;CON__P12035;Q86Y46;CON__Q32MB2;Q7Z794;CON__Q9R0H5;CON__Q7Z794;CON__P19013;CON__Q6IME9;CON__Q14CN4-1;P19013;Q3SY84;Q14CN4;CON__Q3SY84;CON__P05787;P05787;CON__Q9H552;CON__Q9DCV7;CON__Q3KNV1;CON__P08729;CON__Q9NSB2;CON__Q6ISB0;P08729;Q9NSB2;CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__Q8VED5;CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7;CON__P50446	KRT2;KRT76;KRT79;KRT74;KRT3;KRT73;KRT77;KRT4;KRT71;KRT72;KRT8;KRT7;KRT84;KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	0	2	0.816	1	1	1			18.037	18.037	2	0.0020379	10851	DP1063-3	128.86	74.096		+	NaN	NaN	NaN	0	0	Median	59194000	59194000	0	909	22;15;20;30	850	1792;1793;1794	3935;3936;3937;3938;3939	3938		5	9606
FASLQPVSNQIER	0	1	Unmodified	1487.7732	0.77324153	627	Q9NQC7	CYLD	Ubiquitin carboxyl-terminal hydrolase CYLD	yes	yes	0	0	0	2	0		1				18.238	18.238	2	9.8016E-05	9748	DP1063-2	132.25	69.787			NaN	NaN	NaN	0	0	Median	7093800	0	7093800	910	627	851	1795	3940	3940		1	9606
FATEAAITILR	0	1	Unmodified	1204.6816	0.68157298	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3.5	0.5			1	1		20.37	20.37	2	8.1307E-06	14147	DP1063-3	145.72	114.49			3.3898	2.4948	NaN	1	0	Median	28023000	5630100	22393000	911	179	852	1796;1797	3941;3942;3943;3944	3941		4	9606
FATNEAIQR	0	1	Unmodified	1048.5302	0.53015772	50	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	1.5	0.5	1	1				15.379	15.379	2	0.045476	5848	DP1063-2	91.318	53.507			NaN	NaN	NaN	0	0	Median	0	0	0	912	50	853	1798;1799	3945;3946	3946		2	9606
FCANTCVECR	0	1	Unmodified	1315.5108	0.51076096	476	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		15.359	15.359	2	0.0016029	7106	DP1063-4	109.48	109.48			1.3993	0.92483	NaN	1	0	Median	5643300	2125100	3518200	913	476	854	1800	3947	3947		1	9606
FCFTPHTEEGCLSER	0	1	Unmodified	1868.7822	0.78216801	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	2					17.8	17.8	2;3	0.00020422	7650	DP1063-1	170.89	140			2.7252	2.2166	NaN	1	0	Median	19980000	4885600	15095000	914	303	855	1801;1802	3948;3949;3950;3951	3951		4	9606
FCIWTESAFR	0	1	Unmodified	1315.6019	0.60194245	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		21.777	21.777	2	2.0527E-05	15419	DP1063-4	133.86	91.753			2.7455	1.8652	NaN	1	0	Median	19885000	5347400	14538000	915	259	856	1803	3952;3953;3954	3952		3	9606
FCTGLTQIETLFK	1	0	Unmodified	1556.7909	0.79086543	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		23.495	23.495	2	3.0854E-05	17514	DP1063-4	163.84	113.05			NaN	NaN	NaN	0	0	Median	7358100	0	7358100	916	162	857	1804	3955;3956;3957	3957		3	9606
FDAGELITQR	0	1	Unmodified	1148.5826	0.58258722	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		19.32	19.32	2	0.0012094	12354	DP1063-4	123.35	87.917			NaN	NaN	NaN	0	0	Median	14135000	0	14135000	917	249	858	1805	3958;3959	3959		2	9606
FDASFFGVHPK	1	0	Unmodified	1250.6084	0.60840804	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				19.608	19.608	2	0.005169	9912	DP1063-1	94.692	94.692			2.1652	1.7646	12.764	2	0	Median	24188000	8349000	15839000	918	303	859	1806;1807	3960;3961;3962	3960		2	9606
FDCHHCNESLFGK	1	0	Unmodified	1649.6715	0.67149535	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		15.84	15.84	3	0.0002282	7731	DP1063-4	106.79	94.431			1.3516	0.93555	NaN	1	0	Median	11920000	4095800	7824200	919	485	860	1808	3963;3964;3965;3966	3966		4	9606
FDDGAGGDNEVQR	0	1	Unmodified	1378.5749	0.57493566	257	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3.5	0.5			1	1		14.906	14.906	2	0.0001096	6452	DP1063-4	160.36	144.73			1.7484	1.1645	NaN	1	0	Median	9573900	2070500	7503500	920	257	861	1809;1810	3967;3968;3969;3970;3971;3972;3973	3970		7	9606
FDGALNVDLTEFQTNLVPYPR	0	1	Unmodified	2408.2012	0.20122559	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		24.263	24.263	2	1.1091E-34	19151	DP1063-3	226.19	187.81			0.88353	0.61756	40.566	2	0	Median	16072000	8008400	8063300	921	413;605	862	1811;1812	3974;3975;3976;3977;3978;3979;3980	3975		7	9606
FDLMYAK	1	0	Oxidation (M)	902.42079	0.42079019	413;605	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	1	0	3	0			1			17.781	17.781	2	0.017401	10588	DP1063-3	97.071	56.968			2.1201	1.7024	NaN	1	0	Median	64294000	22416000	41878000	922	413;605	863	1813	3981;3982;3983	3983	510	3	9606
FDQLFDDESDPFEVLK	1	0	Unmodified	1942.8836	0.88363942	555	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	3	0			1			24.065	24.065	2	0.0016037	18945	DP1063-3	120.53	100.89			2.2695	1.8224	NaN	1	0	Median	11728000	4362700	7365100	923	555	864	1814	3984;3985;3986	3984		3	9606
FDSEYER	0	1	Unmodified	944.38758	0.3875758	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				14.945	14.945	2	0.022437	5281	DP1063-2	117.16	97.683			2.3176	1.6934	NaN	1	0	Median	10339000	2889000	7449800	924	281	865	1815	3987	3987		1	9606
FDSSLDRK	1	1	Unmodified	966.47706	0.47705951	437	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	3	0			1			13.823	13.823	2	0.029698	5295	DP1063-3	92.47	39.834			NaN	NaN	NaN	0	0	Median	4476700	0	4476700	925	437	866	1816	3988	3988		1	9606
FDTGNLCMVTGGANLGR	0	1	Oxidation (M)	1797.8138	0.81380249	383	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	4.5	0.5				1	1	19.272	19.272	2	0.00059861	12419	DP1063-5	109.44	93.064			1.6411	1.1324	14.782	2	0	Median	24460000	9314600	15145000	926	383	867	1817;1818	3989;3990;3991	3991	473	3	9606
FEAHPNDLYVEGLPENIPFR	0	1	Unmodified	2356.1488	0.14879609	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		2				21.481	21.481	2;3	1.9499E-05	14061	DP1063-2	109.22	84.023			0.72381	0.55136	NaN	1	0	Median	40704000	21347000	19357000	927	418	868	1819;1820	3992;3993;3994;3995;3996	3993		5	9606
FEEEGNPYYSSAR	0	1	Unmodified	1547.6529	0.65285163	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	16.918	16.918	2	1.3749E-65	9368	DP1063-3	287.65	282.31			1.2859	0.98769	17.907	3	0	Median	247480000	107570000	139910000	928	624	869	1821;1822;1823	3997;3998;3999;4000;4001;4002;4003;4004;4005;4006;4007;4008;4009;4010	3998		14	9606
FEELNADLFR	0	1	Unmodified	1252.6088	0.60880197	153	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0			1			21.127	21.127	2	8.9432E-11	15132	DP1063-3	191.85	149.56			3.3225	2.522	NaN	1	0	Median	38355000	8786000	29569000	929	153	870	1824	4011;4012	4011		2	9606
FEELTNLIR	0	1	Unmodified	1133.6081	0.60807369	5	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	2	0		1				20.712	20.712	2	0.0061103	13111	DP1063-2	103.74	33.214			2.7604	2.0124	NaN	1	0	Median	11717000	2975800	8741700	930	5	871	1825	4013	4013		1	9606
FELTGIPPAPR	0	1	Unmodified	1196.6554	0.65535823	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.439	19.439	2	0.010345	12861	DP1063-3	84.498	84.498			2.3124	1.9836	NaN	1	0	Median	187470000	58924000	128540000	931	153	872	1826	4014;4015	4015		2	9606
FENAFLSHVVSQHQALLGTIR	0	1	Unmodified	2366.2495	0.24951318	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			21.093	21.093	3;4	1.3274E-12	15130	DP1063-3	178.71	163.27			1.6314	1.2535	3.7594	2	0	Median	92383000	37261000	55122000	932	207	873	1827;1828	4016;4017;4018;4019;4020;4021;4022	4017		7	9606
FEPYANPTKR	1	1	Unmodified	1221.6142	0.6142217	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	2.67	0.471		1	2			14.944	14.944	2;3	0.0011093	5357	DP1063-2	89.029	69.758			1.1294	1.0639	31.815	3	0	Median	48624000	23143000	25481000	933	323	874	1829;1830;1831	4023;4024;4025;4026;4027;4028;4029	4023		7	9606
FESPEVAER	0	1	Unmodified	1062.4982	0.49818889	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0.816		1	1	1		15.879	15.879	2	4.0368E-05	7995	DP1063-3	141.52	122.74			1.1857	0.90898	10.451	3	0	Plateau	127020000	57218000	69799000	934	323	875	1832;1833;1834	4030;4031;4032;4033;4034;4035;4036;4037	4036		8	9606
FFEVILIDPFHK	1	0	Unmodified	1503.8126	0.81258715	357	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	23.644	23.644	2	0.011759	17730	DP1063-5	83.862	83.862			1.3126	1.1111	NaN	1	0	Median	3097300	1544600	1552700	935	357	876	1835	4038;4039	4038		2	9606
FFVMTSLR	0	1	Oxidation (M)	1015.5161	0.51608756	329	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	1	0	4	0				1		18.839	18.839	2	0.010978	11670	DP1063-4	95.352	34.554			1.5287	0.96478	NaN	1	0	Median	11164000	4490200	6673300	936	329	877	1836	4040;4041;4042;4043	4043	420	4	9606
FGAVWTGDNTAEWDHLK	1	0	Unmodified	1945.8959	0.89587586	491	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	2	0		1				20.453	20.453	3	0.027817	12665	DP1063-2	46.156	24.342			1.4594	1.2209	NaN	1	0	Median	10434000	4131300	6302600	937	491	878	1837	4044	4044		1	9606
FGAYIVDGLR	0	1	Unmodified	1109.5869	0.58694431	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	2	1.15	3	1	1	1		20.236	20.236	2	2.1493E-06	13576	DP1063-4	150.05	150.05			1.3546	1.094	14.855	5	0	Median	709620000	294490000	415130000	938	43;460	879	1838;1839;1840;1841;1842;1843	4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062	4062		18	9606
FGDPVVQSDMK	1	0	Oxidation (M)	1237.5649	0.56488824	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	0	3	0			1			16.06	16.06	2	0.011952	8208	DP1063-3	69.721	53.467			2.655	2.132	NaN	1	0	Median	59811000	16302000	43509000	939	149	880	1844	4063;4064	4064	156	2	9606
FGDPVVQSDMK	1	0	Unmodified	1221.57	0.56997362	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.307	17.307	2	0.003083	9976	DP1063-3	99.568	66.306			2.1537	1.7294	NaN	1	0	Median	24240000	7224000	17016000	940	149	880	1845	4065;4066	4065		2	9606
FGEVVDCTLK	1	0	Unmodified	1166.5642	0.56415996	482	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		17.767	17.767	2	0.010466	10181	DP1063-4	83.647	0			1.7739	1.2279	NaN	1	0	Median	7169900	2501600	4668300	941	482	881	1846	4067	4067		1	9606
FGFPEGSVELYAEK	1	0	Unmodified	1571.7508	0.75077476	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		21.127	21.127	2	0.0028536	14771	DP1063-4	98.156	72.683			2.1581	1.4938	NaN	1	0	Median	22365000	6381900	15984000	942	200	882	1847	4068;4069;4070;4071	4071		4	9606
FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK	1	0	Unmodified	4091.0653	0.065347814	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			2			23.127	23.127	3;4	5.4099E-12	17876	DP1063-3	90.867	77.977		+	NaN	NaN	NaN	0	0	Median	26277000	26277000	0	943	22	883	1848;1849	4072;4073	4073		2	9606
FGGNKVIEK	2	0	Unmodified	990.54983	0.54983053	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					13.629	13.629	2	0.014775	3035	DP1063-1	82.287	42.019			1.2065	1.2125	NaN	1	0	Median	2158300	964820	1193500	944	460	884	1850	4074	4074		1	9606
FGISEPGNQEK	1	0	Unmodified	1204.5724	0.57241646	314;147	P49792;P0DJD0	RANBP2;RGPD1	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1	no	no	0	0	0	1	0	1					16.346	16.346	2	0.002846	6059	DP1063-1	117.31	74.065			NaN	NaN	NaN	0	0	Median	2423800	0	2423800	945	314;147	885	1851	4075	4075		1	9606
FGMFEFLSNHMR	0	1	2 Oxidation (M)	1546.6697	0.66970444	329	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	2	0	4	0				1		19.275	19.275	3	0.003529	12231	DP1063-4	66.267	39.514			1.8862	1.1611	NaN	1	0	Median	9181600	3406500	5775100	946	329	886	1852	4076;4077	4076	421;422	2	9606
FGQAATMEGIGAIGGTPPAFNR	0	1	Oxidation (M)	2178.0528	0.052787212	505	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	0	3	0			1			19.997	19.997	2	7.6123E-05	13677	DP1063-3	127.88	98.894			NaN	NaN	NaN	0	0	Median	7865300	0	7865300	947	505	887	1853	4078;4079	4079	638	2	9606
FGQGGAGPVGGQGPR	0	1	Unmodified	1340.6585	0.65854613	199	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				15.357	15.357	2	0.0025776	5844	DP1063-2	137.46	137.46			1.8715	1.3871	NaN	1	0	Median	28912000	11853000	17060000	948	199	888	1854	4080;4081;4082;4083	4082		4	9606
FGSGMNMGR	0	1	Oxidation (M)	971.39532	0.39532049	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			14.193	14.193	2	0.0079072	5787	DP1063-3	86.794	82.438			1.4044	1.0037	NaN	1	0	Median	17528000	7267600	10260000	949	323	889	1855	4084;4085	4085	395	2	9606
FGVEQDVDMVFASFIR	0	1	Oxidation (M)	1874.8873	0.88728501	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	0	3	0			1			25.747	25.747	2	0.016881	20856	DP1063-3	92.295	68.919			NaN	NaN	NaN	0	0	Median	2759800	0	2759800	950	168	890	1856	4086	4086	213	1	9606
FGVQTDRQDK	1	1	Unmodified	1192.5836	0.58364985	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	3	0			1			13.542	13.542	3	0.03071	4975	DP1063-3	73.499	32.776			NaN	NaN	NaN	0	0	Median	5431600	0	5431600	951	488	891	1857	4087	4087		1	9606
FIDTSQFILNR	0	1	Unmodified	1352.7089	0.70885036	63	O60220	TIMM8A	Mitochondrial import inner membrane translocase subunit Tim8 A	yes	yes	0	0	0	5	0					1	21.03	21.03	2	2.8262E-05	14652	DP1063-5	144.09	94.048			NaN	NaN	NaN	0	0	Median	4905100	0	4905100	952	63	892	1858	4088;4089	4088		2	9606
FIEIAAR	0	1	Unmodified	818.46504	0.46503826	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				17.371	17.371	2	0.0276	8499	DP1063-2	103.28	49.762			2.2788	1.7942	NaN	1	0	Median	61521000	18255000	43267000	953	429	893	1859	4090	4090		1	9606
FIGPSPEVVR	0	1	Unmodified	1099.6026	0.60259438	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.38	1	1	9	1	1	1	21.869	21.869	2	0.00051086	10397	DP1063-5	120.87	120.87			1.1486	0.88115	12.589	11	0	Median	1406600000	626770000	779830000	954	154	894	1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872	4091;4092;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;4103;4104;4105;4106;4107;4108;4109;4110;4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123	4120		33	9606
FIGPSPEVVRK	1	1	Unmodified	1227.6976	0.69755739	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				16.073	16.073	2	0.00051324	6785	DP1063-2	72.325	72.325			1.17	1.1022	NaN	1	0	Median	18622000	8116100	10506000	955	154	895	1873	4124;4125;4126;4127	4126		4	9606
FIHDQTSPNPK	1	0	Unmodified	1282.6306	0.63060004	329	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		13.39	13.39	3	0.0033124	4562	DP1063-4	70.412	48.083			1.3161	0.91098	NaN	1	0	Median	10317000	4626600	5690200	956	329	896	1874	4128;4129;4130;4131	4128		4	9606
FIIGSVSEDNSEDEISNLVK	1	0	Unmodified	2194.0641	0.064122984	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.54	0.929	9	2	1	1		22.537	22.537	2;3	5.8756E-129	15025	DP1063-2	333.44	302.57			1.2888	1.0564	17.569	6	0	Median	330610000	134330000	196280000	957	460	897	1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887	4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154;4155;4156;4157;4158;4159;4160	4150		29	9606
FIIPNVVK	1	0	Unmodified	928.57459	0.57458871	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		19.945	19.945	2	0.050575	13121	DP1063-4	74.439	5.0063			2.0324	1.4068	NaN	1	0	Median	17717000	4466700	13250000	958	91	898	1888	4161	4161		1	9606
FINMFAVLDELK	1	0	Oxidation (M)	1454.7479	0.74793799	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	1	0	2	0		1				22.859	22.859	2	0.0043739	15860	DP1063-2	90.05	65.175			1.0274	0.85953	NaN	1	0	Median	8450500	3993400	4457200	959	543;581	899	1889	4162	4162	674	1	9606
FISELAR	0	1	Unmodified	834.45995	0.45995289	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				17.106	17.106	2	0.050946	8166	DP1063-2	89.673	33.647			1.4299	1.0698	NaN	1	0	Median	32518000	13855000	18663000	960	543;581	900	1890	4163	4163		1	9606
FITHAPPGEFNEVFNDVR	0	1	Unmodified	2088.0065	0.0064889465	328	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	4	0				1		20.191	20.191	3	2.2385E-06	13432	DP1063-4	180.1	152.95			NaN	NaN	NaN	0	0	Median	7651000	0	7651000	961	328	901	1891	4164;4165	4165		2	9606
FKDLGEEHFK	2	0	Unmodified	1248.6139	0.61388734	14	CON__P02769			yes	yes	0	0	1	2.86	1.25	1	2	2	1	1	15.255	15.255	2;3	0.00014827	5703	DP1063-2	138.25	57.331		+	NaN	NaN	NaN	0	0	Median	3808399999.9999995	3808399999.9999995	0	962	14	902	1892;1893;1894;1895;1896;1897;1898	4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177	4167		12	9606
FKMPEMHFK	2	0	2 Oxidation (M)	1225.5624	0.56238582	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	2	1	1.5	0.5	1	1				13.734	13.734	3	0.030719	3091	DP1063-1	46.462	46.462			6.2165	6.2476	NaN	1	0	Median	1975500	247180	1728300	963	455	903	1899;1900	4178;4179	4178	556;557	2	9606
FLAVGLVDNTVR	0	1	Unmodified	1302.7296	0.7295858	509	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					20.677	20.677	2	0.0013473	11183	DP1063-1	110.53	86.504			3.6548	2.918	NaN	1	0	Median	5365300	1039900	4325500	964	509	904	1901	4180;4181	4180		2	9606
FLDDLGNAK	1	0	Unmodified	991.49746	0.4974606	88	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	18.044	18.044	2	0.002939	10806	DP1063-5	113.5	55.332			NaN	NaN	NaN	0	0	Median	8066400	0	8066400	965	88	905	1902	4182	4182		1	9606
FLDGIYVSEK	1	0	Unmodified	1169.5968	0.5968403	242	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	5	0					1	19.746	19.746	2	0.001297	13076	DP1063-5	111.46	84.325			1.8563	1.5713	NaN	1	0	Median	7422600	3093900	4328700	966	242	906	1903	4183;4184	4184		2	9606
FLEQQNQVLQTK	1	0	Unmodified	1474.778	0.77799256	101;22	CON__P35908v2;P35908;CON__P35908;CON__Q6NXH9;Q7Z794;CON__Q9R0H5;CON__Q7Z794;P04264;CON__P04264	KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	no	no	0	0	0	3	1.41	1	1	1	1	1	17.34	17.34	2	1.0295E-31	7065	DP1063-1	253.71	163.82		+	NaN	NaN	NaN	0	0	Median	830300000	830300000	0	967	22;101	907	1904;1905;1906;1907;1908	4185;4186;4187;4188;4189;4190;4191;4192;4193;4194;4195	4186		11	9606
FLHKHDLDLICR	1	1	Unmodified	1565.8137	0.81366656	365;260	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	1	3.75	0.829			2	1	1	16.517	16.517	2;3	0.00025067	8890	DP1063-3	145.28	103.03			NaN	NaN	NaN	0	0	Median	255410000	0	255410000	968	260;365	908	1909;1910;1911;1912	4196;4197;4198;4199;4200;4201;4202	4199		7	9606
FLILPDMLK	1	0	Oxidation (M)	1104.6253	0.62530365	380	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	1	0	5	0					1	21.378	21.378	2	0.0090285	15068	DP1063-5	83.265	57.326			2.0619	1.7454	NaN	1	0	Median	10100000	2896800	7203500	969	380	909	1913	4203;4204;4205;4206	4204	471	4	9606
FLIPNASQAESK	1	0	Unmodified	1303.6772	0.67721588	404	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4	0				1		18.206	18.206	2	0.037767	10810	DP1063-4	77.379	28.583			NaN	NaN	NaN	0	0	Median	4536700	0	4536700	970	404	910	1914	4207	4207		1	9606
FLIQNVLR	0	1	Unmodified	1001.6022	0.60220045	274	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				20.768	20.768	2	0.016592	13156	DP1063-2	99.384	60.166			1.9845	1.4354	NaN	1	0	Median	18054000	6080000	11974000	971	274	911	1915	4208;4209;4210	4208		3	9606
FLSDVYPDGFK	1	0	Unmodified	1286.6183	0.61830402	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		20.397	20.397	2	1.9403E-09	14141	DP1063-3	182.39	145.94			1.3266	1.0652	17.828	3	0	Plateau	249610000	103910000	145700000	972	110	912	1916;1917;1918	4211;4212;4213;4214;4215;4216;4217;4218;4219;4220;4221	4218		11	9606
FLYECPWR	0	1	Unmodified	1169.5328	0.53280025	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			20.274	20.274	2	8.5998E-17	12466	DP1063-2	187.14	161.4			1.3436	1.1438	10.047	2	0	Median	573020000	247150000	325870000	973	154	913	1919;1920;1921	4222;4223;4224;4225;4226;4227;4228;4229;4230;4231	4225		10	9606
FLYIWPNAR	0	1	Unmodified	1178.6237	0.62366417	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.15	0.477			18	1	1	25.859	25.859	2	2.958E-10	16003	DP1063-3	163.84	163.84			1.4729	1.1466	22.91	5	0	Median	975480000	395710000	579770000	974	624	914	1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941	4232;4233;4234;4235;4236;4237;4238;4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250;4251;4252;4253;4254;4255;4256;4257;4258;4259;4260;4261;4262;4263;4264;4265;4266;4267;4268;4269;4270;4271;4272;4273;4274;4275	4232		44	9606
FMSAYEQR	0	1	Oxidation (M)	1046.4491	0.4491302	511	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	0	3	0			1			14.68	14.68	2	0.0077357	6353	DP1063-3	104.37	74.989			1.4195	1.1016	NaN	1	0	Median	51112000	21776000	29336000	975	511	915	1942	4276;4277;4278	4278	648	3	9606
FNADEFEDMVAEK	1	0	Oxidation (M)	1559.645	0.64498906	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	5	0					1	19.219	19.219	2	0.00060969	12256	DP1063-5	110.08	110.08			3.4529	2.9228	NaN	1	0	Median	12868000	4136600	8731200	976	220	916	1943	4279;4280;4281;4282	4279	272	4	9606
FNADEFEDMVAEKR	1	1	Oxidation (M)	1715.7461	0.74610008	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	5	0					1	18.233	18.233	3	0.00025577	11047	DP1063-5	108.97	108.97			2.9967	2.5549	NaN	1	0	Median	12903000	4355600	8547800	977	220	917	1944	4283;4284	4283	272	2	9606
FNASQLITQR	0	1	Unmodified	1176.6251	0.62512073	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		18.714	18.714	2	9.3058E-06	11485	DP1063-4	141.48	119.39			1.8254	1.2104	NaN	1	0	Median	16443000	5778100	10664000	978	598	918	1945	4285;4286	4286		2	9606
FNEEHIPDSPFVVPVASPSGDAR	0	1	Unmodified	2466.1816	0.18155278	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					20.682	20.682	3	0.00026503	11130	DP1063-1	106.63	80.219			NaN	NaN	NaN	0	0	Median	7364200	0	7364200	979	190	919	1946	4287;4288	4288		2	9606
FNEVVSVLK	1	0	Unmodified	1033.5808	0.5807963	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				18.801	18.801	2	0.0033378	10504	DP1063-2	111.95	31.718			NaN	NaN	NaN	0	0	Median	18862000	0	18862000	980	654	920	1947	4289;4290	4290		2	9606
FNFLNPNDPYHAYYR	0	1	Unmodified	1929.8798	0.87983187	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				20.516	20.516	3	0.00063988	12865	DP1063-2	127.3	108.84			1.1283	0.82075	NaN	1	0	Median	22884000	10202000	12682000	981	513	921	1948	4291	4291		1	9606
FNPFVTSDR	0	1	Unmodified	1081.5193	0.51925868	356	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	18.872	18.872	2	0.012149	11907	DP1063-5	90.709	56.536			1.3753	1.0272	NaN	1	0	Median	16470000	6483300	9986300	982	356	922	1949	4292;4293;4294;4295	4293		4	9606
FNVWDTAGQEK	1	0	Unmodified	1293.599	0.59896556	387	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	18.937	18.937	2	4.1245E-07	11996	DP1063-5	170.5	149.66			3.0248	2.5605	NaN	1	0	Median	26116000	6341100	19775000	983	387	923	1950	4296;4297;4298	4297		3	9606
FPEELTQTFMSCNLITGMFQR	0	1	2 Oxidation (M)	2581.1651	0.16511613	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	2	0	4	0				1		22.976	22.976	2	0.042597	16883	DP1063-4	65.472	38.136			NaN	NaN	NaN	0	0	Median	0	0	0	984	218	924	1951	4299	4299	269;270	1	9606
FPGDSVVTGR	0	1	Unmodified	1033.5193	0.51925868	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	17.296	17.296	2	1.0879E-07	9930	DP1063-3	172.25	123.97			1.2919	1.0922	23.967	3	0	Plateau	184260000	75968000	108290000	985	111	925	1952;1953;1954	4300;4301;4302;4303;4304;4305;4306;4307	4301		8	9606
FPGQLNADLR	0	1	Unmodified	1129.588	0.58800695	414;129;480;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		18.325	18.325	2	1.9099E-07	10888	DP1063-4	168.26	103.01			2.0493	1.6901	4.4314	2	0	Median	302650000	91383000	211260000	986	129;414;480;471	926	1955;1956	4308;4309;4310;4311;4312;4313;4314;4315;4316	4315		9	9606
FPGQLNADLRK	1	1	Unmodified	1257.683	0.68296996	414;129;480;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	1	3.25	0.433			3	1		16.714	16.714	2;3	8.3363E-06	8950	DP1063-3	122.33	75.939			2.2338	2.026	9.1927	3	0	Plateau	173510000	50583000	122920000	987	129;414;480;471	927	1957;1958;1959;1960	4317;4318;4319;4320;4321;4322;4323;4324	4318		7	9606
FPQLDSTSFANSR	0	1	Unmodified	1468.6947	0.69465686	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					19.501	19.501	2	1.6326E-08	9688	DP1063-1	186.87	136.83			2.4613	2.0404	NaN	1	0	Median	22751000	7007100	15744000	988	303	928	1961	4325;4326	4326		2	9606
FPSLLTHNENMVAK	1	0	Oxidation (M)	1615.8028	0.8028271	397	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					2	17.508	17.508	2;3	0.00084531	10143	DP1063-5	87.863	87.863			1.4236	1.205	2.2407	2	0	Median	35109000	16159000	18950000	989	397	929	1962;1963	4327;4328;4329;4330;4331	4328	488	5	9606
FQAQSLGTTYIYDIPEMFR	0	1	Oxidation (M)	2295.0882	0.088169665	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.8	0.748	2	2	1			23.019	23.019	2;3	1.5093E-11	13890	DP1063-1	188.92	188.92			1.272	1.0383	8.9083	4	0	Median	230310000	101050000	129270000	990	460	930	1964;1965;1966;1967;1968	4332;4333;4334;4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348	4333	570	17	9606
FQAQSLGTTYIYDIPEMFR	0	1	Unmodified	2279.0933	0.093255043	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				24.547	24.547	2	4.8906E-05	15538	DP1063-1	154.07	154.07			1.1364	0.89309	1.0732	2	0	Median	10794000	4385200	6408700	991	460	930	1969;1970	4349;4350;4351;4352;4353;4354	4349		6	9606
FQDGDLTLYQSNTILR	0	1	Unmodified	1882.9425	0.94249171	140	P09211	GSTP1	Glutathione S-transferase P	yes	yes	0	0	0	5	0					1	21.101	21.101	2	3.5178E-30	14729	DP1063-5	230.81	214.43			2.6577	1.9849	NaN	1	0	Median	20633000	7092900	13540000	992	140	931	1971	4355;4356	4356		2	9606
FQESEERPK	1	1	Unmodified	1148.5462	0.54620171	247	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	2	0		1				12.85	12.85	2	0.006102	2720	DP1063-2	100.02	47.535			2.2984	2.1652	NaN	1	0	Median	4222800	1345200	2877600	993	247	932	1972	4357;4358	4357		2	9606
FQSGDFHVINGVLR	0	1	Unmodified	1587.8158	0.81577505	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				19.519	19.519	3	0.010056	11428	DP1063-2	56.599	41.657			2.595	1.882	NaN	1	0	Median	15582000	3974200	11608000	994	336	933	1973	4359	4359		1	9606
FQSIVIGCALEDQKK	2	0	Unmodified	1734.8975	0.89745577	88	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	1	5	0					1	18.602	18.602	2	0.0031127	11565	DP1063-5	128.68	93.902			NaN	NaN	NaN	0	0	Median	0	0	0	995	88	934	1974	4360	4360		1	9606
FQSSHHPTDITSLDQYVER	0	1	Unmodified	2259.0556	0.055623984	169	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	0		1				18.186	18.186	3	9.4282E-12	9638	DP1063-2	183.71	183.71			1.9384	1.4713	NaN	1	0	Median	38911000	11402000	27508000	996	169	935	1975	4361;4362;4363	4361		3	9606
FQVENSNR	0	1	Unmodified	992.46756	0.46755746	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	3	0			1			14.107	14.107	2	0.014269	5635	DP1063-3	99.375	45.665		+	NaN	NaN	NaN	0	0	Median	6193500	6193500	0	997	8	936	1976	4364	4364		1	
FSALQQAVPTESTDNRR	0	2	Unmodified	1918.9497	0.94970235	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	1.5	0.5	1	1				16.804	16.804	3	3.8133E-07	6455	DP1063-1	175.01	144.27			4.0003	3.6768	NaN	1	0	Median	23137000	2950300	20187000	998	442	937	1977;1978	4365;4366;4367;4368;4369	4366		5	9606
FSASGELGNGNIK	1	0	Unmodified	1292.6361	0.63607935	157	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				2		16.841	16.841	2	0.016871	8924	DP1063-4	84.817	26.587			NaN	NaN	NaN	0	0	Median	0	0	0	999	157	938	1979;1980	4370;4371	4370		2	9606
FSATEVTNK	1	0	Unmodified	995.49238	0.49237523	553	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				15.23	15.23	2	0.049347	5708	DP1063-2	80.165	47.273			NaN	NaN	NaN	0	0	Median	6375600	0	6375600	1000	553	939	1981	4372	4372		1	9606
FSGELNNEGCFSQQVNTK	1	0	Unmodified	2057.9113	0.91126793	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	1	0	1					17.936	17.936	2	0.00048483	7771	DP1063-1	156.52	124.81		+	NaN	NaN	NaN	0	0	Median	1521100	1521100	0	1001	8	940	1982	4373;4374	4374		2	
FSGWYDADLSPAGHEEAKR	1	1	Unmodified	2134.9708	0.97083172	185	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	1	5	0					1	18.036	18.036	4	0.0036444	10766	DP1063-5	84.035	64.615			NaN	NaN	NaN	0	0	Median	6230100	0	6230100	1002	185	941	1983	4375;4376	4375		2	9606
FSHEEIAMATVTALR	0	1	Oxidation (M)	1690.8349	0.83485551	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	1	0	4	0				2		18.383	18.383	2;3	0.00036865	11007	DP1063-4	120.53	99.789			2.0949	1.3945	NaN	1	0	Median	22252000	5333300	16918000	1003	98	942	1984;1985	4377;4378;4379;4380	4378	69	4	9606
FSHEEIAMATVTALR	0	1	Unmodified	1674.8399	0.83994089	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				2		19.658	19.658	3	0.0018985	12818	DP1063-4	98.253	69.154			NaN	NaN	NaN	0	0	Median	6968400	0	6968400	1004	98	942	1986;1987	4381;4382	4381		2	9606
FSHQGVQLIDFSPCER	0	1	Unmodified	1918.8996	0.89958103	340	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		1				19.541	19.541	2	0.0082809	11520	DP1063-2	96.866	62.816			NaN	NaN	NaN	0	0	Median	6858500	0	6858500	1005	340	943	1988	4383	4383		1	9606
FSNSSSSNEFSK	1	0	Unmodified	1319.563	0.56297399	29	CON__Q5D862;Q5D862	FLG2	Filaggrin-2	yes	no	0	0	0	1	0	1					14.82	14.82	2	0.011023	4355	DP1063-1	88.155	35.9		+	NaN	NaN	NaN	0	0	Median	671670	671670	0	1006	29	944	1989	4384;4385	4384		2	9606
FSPDGELYASGSEDGTLR	0	1	Unmodified	1899.8487	0.8486509	670	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				1		19.137	19.137	2	0.00034389	12072	DP1063-4	165.51	140.49			NaN	NaN	NaN	0	0	Median	7805500	0	7805500	1007	670	945	1990	4386;4387	4387		2	9606
FSPDSQYIDNR	0	1	Unmodified	1340.5997	0.59969384	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				17.133	17.133	2	4.5459E-05	8179	DP1063-2	140.83	98.856			NaN	NaN	NaN	0	0	Median	8285300	0	8285300	1008	558	946	1991	4388;4389	4388		2	9606
FSPLTTNLINLLAENGR	0	1	Unmodified	1872.0105	0.010511692	300	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	5	0					1	24.665	24.665	2	0.0018328	18829	DP1063-5	113.76	81.141			NaN	NaN	NaN	0	0	Median	2182800	0	2182800	1009	300	947	1992	4390;4391	4390		2	9606
FSSCGGGGGSFGAGGGFGSR	0	1	Unmodified	1764.7274	0.72743033	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.5	1.12	1	1	1	1		17.785	17.785	2	5.6333E-37	7628	DP1063-1	244.23	228.31		+	NaN	NaN	NaN	0	0	Median	116030000	116030000	0	1010	101	948	1993;1994;1995;1996	4392;4393;4394;4395;4396;4397;4398	4393		7	9606
FSSSGGGGGGGRFSSSSGYGGGSSR	0	2	Unmodified	2197.9373	0.93729976	251	P35527	KRT9	Keratin, type I cytoskeletal 9	yes	yes	0	0	1	4	0				1		14.772	14.772	3	0.0040251	6347	DP1063-4	90.464	69.906		+	NaN	NaN	NaN	0	0	Median	2800200	2800200	0	1011	251	949	1997	4399	4399		1	9606
FSSSSGYGGGSSR	0	1	Unmodified	1234.5214	0.52144352	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.75	1.48	1	1	1		1	13.953	13.953	2	1.2764E-17	5372	DP1063-3	223.31	185.15		+	NaN	NaN	NaN	0	0	Median	262530000	262530000	0	1012	251	950	1998;1999;2000;2001	4400;4401;4402;4403;4404;4405;4406;4407	4405		8	9606
FSSSTEQSSASR	0	1	Unmodified	1272.5582	0.55822296	46;573	O14641;Q92997	DVL2;DVL3	Segment polarity protein dishevelled homolog DVL-2;Segment polarity protein dishevelled homolog DVL-3	no	no	0	0	0	3	0.816		1	1	1		12.999	12.999	2	6.7846E-08	2909	DP1063-2	185.6	154.53			NaN	NaN	NaN	0	0	Median	19332000	0	19332000	1013	46;573	951	2002;2003;2004	4408;4409;4410;4411;4412	4409		5	9606
FSVCVLGDQQHCDEAK	1	0	Unmodified	1891.8193	0.8192818	397	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					3	17.577	17.577	2;3	1.0628E-09	10195	DP1063-5	184.02	162.35			1.5031	1.2723	NaN	1	0	Median	32368000	13902000	18465000	1014	397	952	2005;2006;2007	4413;4414;4415;4416;4417;4418	4414		6	9606
FSVSPVVR	0	1	Unmodified	889.50215	0.50215205	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2.5	0.5		1	1			17.441	17.441	2	0.010975	8670	DP1063-2	110.63	63.97			2.6692	2.0954	NaN	1	0	Median	70797000	16266000	54531000	1015	165	953	2008;2009	4419;4420;4421;4422;4423	4421		5	9606
FSWFVDDVEVNTATTKPR	1	1	Unmodified	2111.0324	0.032369346	9	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	3	0			1			21.019	21.019	3	0.00092989	15049	DP1063-3	176.08	138.17		+	NaN	NaN	NaN	0	0	Median	15710000	15710000	0	1016	9	954	2010	4424;4425	4424		2	
FTASAGIQVVGDDLTVTNPK	1	0	Unmodified	2032.0477	0.047685059	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				2		20.658	20.658	2;3	6.4031E-34	14030	DP1063-4	262.37	238.3			1.6275	1.1265	29.672	2	0	Median	36644000	13563000	23080000	1017	123	955	2011;2012	4426;4427;4428;4429;4430;4431;4432	4427		7	9606
FTAVEDQYYCVDCYK	1	0	Unmodified	1959.8019	0.8019004	476	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		19.457	19.457	2	0.0021236	12498	DP1063-4	142.97	131.05			1.164	0.8057	NaN	1	0	Median	9551300	4876800	4674500	1018	476	956	2013	4433;4434;4435;4436	4433		4	9606
FTITPPTAQVVGVLK	1	0	Unmodified	1569.913	0.91302948	328	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	4	0				1		21.464	21.464	2	0.00079559	15088	DP1063-4	123.67	89.71			NaN	NaN	NaN	0	0	Median	4470800	0	4470800	1019	328	957	2014	4437;4438	4438		2	9606
FTQAGSEVSALLGR	0	1	Unmodified	1434.7467	0.74669243	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	4	0				1		20.406	20.406	2	0.051019	13780	DP1063-4	74.76	41.015			NaN	NaN	NaN	0	0	Median	4101100	0	4101100	1020	121	958	2015	4439	4439		1	9606
FVDGLMIHSGDPVNYYVDTAVR	0	1	Oxidation (M)	2483.1791	0.17910994	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		20.903	20.903	3	3.3899E-09	14382	DP1063-4	159.14	159.14			2.1885	1.609	NaN	1	0	Median	36896000	10747000	26149000	1021	200	959	2016	4440;4441;4442;4443	4442	255	4	9606
FVIATSTK	1	0	Unmodified	865.49092	0.49091866	439	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.199	16.199	2	0.016786	8190	DP1063-4	98.997	61.837			1.5911	1.1013	NaN	1	0	Median	15787000	6192100	9594400	1022	439	960	2017	4444;4445	4444		2	9606
FVIGGPQGDAGLTGR	0	1	Unmodified	1443.747	0.74702678	235	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	4	0				1		18.938	18.938	2	0.0027352	11808	DP1063-4	108.68	74.598			NaN	NaN	NaN	0	0	Median	4801400	0	4801400	1023	235	961	2018	4446;4447	4446		2	9606
FVLINWTGEGVNDVR	0	1	Unmodified	1717.8788	0.87876924	649	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	3	0			1			22.544	22.544	2	0.023058	17011	DP1063-3	83.182	37.823			NaN	NaN	NaN	0	0	Median	4625500	0	4625500	1024	649	962	2019	4448	4448		1	9606
FVQCPDGELQK	1	0	Unmodified	1319.618	0.61798644	660	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	3	0			1			16.003	16.003	2	0.010844	8159	DP1063-3	89.029	58.342			NaN	NaN	NaN	0	0	Median	7861400	0	7861400	1025	660	963	2020	4449	4449		1	9606
FVTVQTISGTGALR	0	1	Unmodified	1448.7987	0.798728	94	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	4	0				1		19.233	19.233	2	0.0019174	12174	DP1063-4	135.99	135.99			2.7512	1.775	NaN	1	0	Median	13265000	3965000	9299700	1026	94	964	2021	4450;4451	4450		2	9606
FVVMVTPEDLK	1	0	Unmodified	1276.6737	0.67371041	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	2.5	1.12	1	1	1	1		20.838	20.838	2	1.4234E-05	11395	DP1063-1	139.98	102.91			1.1011	0.92886	21.033	4	0	Median	169910000	79718000	90196000	1027	43;460	965	2022;2023;2024;2025	4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466	4454		15	9606
FVVMVTPEDLK	1	0	Oxidation (M)	1292.6686	0.66862503	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	0	2.17	1.46	3	1	1		1	25.157	25.157	2	0.0004802	11669	DP1063-2	117.31	69.221			1.1431	0.93692	12.672	6	0	Median	128320000	57312000	71006000	1028	43;460	965	2026;2027;2028;2029;2030;2031	4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481	4472	37	15	9606
FWEVISDEHGIDPTGSYHGDSDLQLER	0	1	Unmodified	3101.4003	0.40027234	480	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	3	0			1			20.832	20.832	3	0.0038654	14795	DP1063-3	76.186	9.3155			NaN	NaN	NaN	0	0	Median	0	0	0	1029	480	966	2032	4482	4482		1	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	0	1	Unmodified	3101.4003	0.40027234	129	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		20.804	20.804	4	0.0079171	14707	DP1063-3	43.099	20.692			2.3558	1.6392	33.344	2	0	Median	37147000	12459000	24688000	1030	129	967	2033;2034	4483;4484	4483		1	9606
FWEVISDEHGIDPTGTYHGDSDLQLER	0	1	Unmodified	3115.4159	0.4159224	414	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3.5	0.5			1	1		20.737	20.737	4	0.0045747	14730	DP1063-3	48.232	48.232			1.5232	1.1271	NaN	1	0	Median	32220000	6862200	25358000	1031	414	968	2035;2036	4485;4486	4485		1	9606
FWYFVSQLK	1	0	Unmodified	1216.6281	0.62808085	436	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	22.529	22.529	2	0.031989	16432	DP1063-5	72.23	37.427			1.5449	1.3077	NaN	1	0	Median	4692500	2266600	2425900	1032	436	969	2037	4487	4487		1	9606
FYALSASFEPFSNK	1	0	Unmodified	1606.7668	0.76675917	223	P27797	CALR	Calreticulin	yes	yes	0	0	0	3	0			1			22.128	22.128	2	0.0023945	16524	DP1063-3	109.39	81.907			NaN	NaN	NaN	0	0	Median	4189600	0	4189600	1033	223	970	2038	4488;4489	4489		2	9606
FYEAFSK	1	0	Unmodified	890.41742	0.41741937	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				17.351	17.351	2	0.027281	8494	DP1063-2	107.43	68.211			2.6626	2.2275	NaN	1	0	Median	65453000	22128000	43325000	1034	135	971	2039	4490;4491	4491		2	9606
FYEQFSK	1	0	Unmodified	947.43888	0.43888309	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				16.76	16.76	2	0.027639	7673	DP1063-2	102.77	34.289			2.6548	2.221	NaN	1	0	Median	46108000	13037000	33071000	1035	132	972	2040	4492	4492		1	9606
GADFLVTEVENGGSLGSK	1	0	Unmodified	1778.8687	0.86865806	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			1			21.232	21.232	2	0.0003935	15339	DP1063-3	127.3	102.95			2.408	1.9336	NaN	1	0	Median	21338000	5103100	16235000	1036	168	973	2041	4493;4494	4493		2	9606
GAEAANVTGPGGVPVQGSK	1	0	Unmodified	1694.8588	0.85876208	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.908	15.908	2	8.8908E-05	7742	DP1063-4	147.73	119.35			1.5063	1.0426	NaN	1	0	Median	13623000	5103500	8519400	1037	410	974	2042	4495;4496;4497;4498	4496		4	9606
GAEILEVLHSLPAVR	0	1	Unmodified	1602.9093	0.90934108	497	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	4	0				1		22.249	22.249	3	0.0094007	16014	DP1063-4	84.468	53.47			NaN	NaN	NaN	0	0	Median	0	0	0	1038	497	975	2043	4499	4499		1	9606
GAFGKPQGTVAR	1	1	Unmodified	1187.6411	0.64110515	220	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	1	5	0					2	13.749	13.749	2;3	0.0050996	5549	DP1063-5	89.356	48.629			2.8454	2.4259	NaN	1	0	Median	46949000	2679000	44270000	1039	220	976	2044;2045	4500;4501;4502	4502		3	9606
GAGQQQSQEMMEVDR	0	1	2 Oxidation (M)	1724.7094	0.709397	512	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	2	0	4	0				1		13.433	13.433	2	0.0015589	4676	DP1063-4	112.13	81.92			NaN	NaN	NaN	0	0	Median	3119200	0	3119200	1040	512	977	2046	4503;4504	4504	652;653	2	9606
GAGTGGLGLAVEGPSEAK	1	0	Unmodified	1569.7999	0.79985021	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					18.099	18.099	2	7.3838E-05	7961	DP1063-1	154.1	128.91			10.524	8.7785	NaN	1	0	Median	21937000	2394700	19542000	1041	190	978	2047	4505;4506;4507	4507		3	9606
GAHSVGLMWWMLAR	0	1	2 Oxidation (M)	1645.7857	0.78573725	0	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	2	0	4	0				1		20.633	20.633	3	0.049864	13928	DP1063-4	56.295	25.752			NaN	NaN	NaN	0	0	Median	1770900	0	1770900	1042	0	979	2048	4508	4508	0;1	1	9606
GALQNIIPASTGAAK	1	0	Unmodified	1410.7831	0.78307794	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.755	18.755	2	0.0015006	11482	DP1063-4	150.09	107.88			2.0879	1.4452	NaN	1	0	Median	55498000	16563000	38934000	1043	102	980	2049	4509;4510;4511;4512	4510		4	9606
GANAVGYTNYPDNVVFK	1	0	Unmodified	1827.8792	0.87916317	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.316	1	18	1			23.823	23.823	2	5.6106E-22	11555	DP1063-2	221.09	185.91			1.256	1.0194	15.121	5	0	Median	939720000	397440000	542280000	1044	154	981	2050;2051;2052;2053;2054;2055;2056;2057;2058;2059;2060;2061;2062;2063;2064;2065;2066;2067;2068;2069	4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542;4543;4544;4545;4546	4517		34	9606
GANDFMCDEMER	0	1	2 Oxidation (M)	1505.5221	0.5221135	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	2	0	3	0			1			15.162	15.162	2	0.0002705	7022	DP1063-3	108.47	108.47			4.2814	3.059	NaN	1	0	Median	17483000	3827100	13656000	1045	179	982	2070	4547;4548	4548	223;224	2	9606
GASQAGMLAPGTR	0	1	Oxidation (M)	1231.5979	0.5979197	510	Q15417	CNN3	Calponin-3	yes	yes	0	1	0	4	0				1		14.236	14.236	2	0.012602	5590	DP1063-4	91.701	61.447			NaN	NaN	NaN	0	0	Median	5705600	0	5705600	1046	510	983	2071	4549	4549	647	1	9606
GASQAGMTGYGMPR	0	1	2 Oxidation (M)	1414.5969	0.59693343	261	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	2	0	5	0					1	13.704	13.704	2	0.00014262	5479	DP1063-5	152.7	123.53			5.7192	4.2714	NaN	1	0	Median	14742000	1998700	12743000	1047	261	984	2072	4550;4551;4552	4551	312;313	3	9606
GATQQILDEAER	0	1	Unmodified	1329.6525	0.6524577	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3.5	0.5			1	1		17.757	17.757	2	4.612E-08	10498	DP1063-3	188.99	103.31			NaN	NaN	NaN	0	0	Median	92626000	0	92626000	1048	419	985	2073;2074	4553;4554;4555;4556;4557	4553		5	9606
GATYGKPVHHGVNQLK	2	0	Unmodified	1704.906	0.90598704	357	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	1	5	0					2	12.78	12.78	3;4	0.00083923	4553	DP1063-5	106.32	81.898			1.6233	1.5861	16.024	2	0	Median	13870000	5713200	8156800	1049	357	986	2075;2076	4558;4559;4560;4561;4562;4563;4564;4565	4562		8	9606
GAVDGGLSIPHSTK	1	0	Unmodified	1337.6939	0.69392858	288	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				2		16.108	16.108	2;3	0.011507	8095	DP1063-4	54.402	35.008			1.9	1.3151	NaN	1	0	Median	14188000	4592900	9595200	1050	288	987	2077;2078	4566;4567;4568;4569	4567		4	9606
GAVEALAAALAHISGATSVDQR	0	1	Unmodified	2107.1022	0.10218025	629	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				24.129	24.129	3	1.5714E-07	17493	DP1063-2	108.13	108.13			2.2611	1.6637	NaN	1	0	Median	9491800	3171500	6320400	1051	629	988	2079	4570;4571;4572	4571		3	9606
GAVECCPNCR	0	1	Unmodified	1221.4689	0.46889614	236	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				1		13.263	13.263	2	0.0075239	4445	DP1063-4	89.752	73.549			2.6744	1.84	NaN	1	0	Median	4568500	1362900	3205600	1052	236	989	2080	4573;4574;4575;4576	4573		4	9606
GAVEIIFK	1	0	Unmodified	875.51165	0.5116541	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			19.389	19.389	1;2	0.021287	12833	DP1063-3	94.006	8.6469			1.4068	1.1297	1.3773	2	0	Median	321580000	136140000	185440000	1053	111	990	2081;2082	4577;4578;4579;4580	4579		3	9606
GAVIATELK	1	0	Unmodified	900.52803	0.52803245	54	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	3	0			1			16.471	16.471	2	0.041468	8826	DP1063-3	82.241	41.462			NaN	NaN	NaN	0	0	Median	13696000	0	13696000	1054	54	991	2083	4581	4581		1	9606
GAVSAEQVIAGFNR	0	1	Unmodified	1417.7314	0.73137672	646	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	5	0					1	20.296	20.296	2	0.00065399	13759	DP1063-5	125.74	47.248			NaN	NaN	NaN	0	0	Median	5018600	0	5018600	1055	646	992	2084	4582	4582		1	9606
GAWSNVLR	0	1	Unmodified	901.477	0.47699993	108;159;158	P05141;P12235;P12236	SLC25A5;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				2		18.43	18.43	1;2	0.00094824	11046	DP1063-4	133.6	68.797			1.8614	1.317	8.3701	2	0	Median	77653000	27035000	50617000	1056	108;158;159	993	2085;2086	4583;4584;4585;4586;4587	4587		5	9606
GCEVVVSGK	1	0	Unmodified	933.45897	0.45896661	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		13.888	13.888	2	0.014193	5152	DP1063-4	87.181	44.058			2.3152	1.6025	NaN	1	0	Median	15294000	5024000	10270000	1057	200	994	2087	4588;4589;4590	4588		3	9606
GCGTVLLSGPR	0	1	Unmodified	1115.5757	0.5757277	447	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	17.039	17.039	2	0.0029653	9487	DP1063-5	116.05	83.158			NaN	NaN	NaN	0	0	Median	18521000	0	18521000	1058	447	995	2088	4591;4592	4591		2	9606
GCHLLVATPGR	0	1	Unmodified	1179.6183	0.61826122	42	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			15.759	15.759	2	0.00841	7795	DP1063-3	93.598	55.437			NaN	NaN	NaN	0	0	Median	10942000	0	10942000	1059	42	996	2089	4593	4593		1	9606
GCITIIGGGDTATCCAK	1	0	Unmodified	1753.7797	0.77972517	95	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	4	0				2		17.739	17.739	2	0.0025951	10110	DP1063-4	150.21	111.43			NaN	NaN	NaN	0	0	Median	4910400	0	4910400	1060	95	997	2090;2091	4594;4595	4594		2	9606
GCTATLGNFAK	1	0	Unmodified	1138.5441	0.54409322	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.947	16.947	2	2.1906E-05	9080	DP1063-4	132.76	105.5			2.4434	1.6913	NaN	1	0	Median	36213000	11330000	24884000	1061	172	998	2092	4596;4597;4598	4596		3	9606
GCTGSLNMTLQR	0	1	Oxidation (M)	1352.6177	0.61766887	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	1	0	3	0			1			15.614	15.614	2	0.032092	7681	DP1063-3	82.417	46.875			NaN	NaN	NaN	0	0	Median	4768000	0	4768000	1062	582	999	2093	4599	4599	700	1	9606
GDADQASNILASFGLSAR	0	1	Unmodified	1791.8751	0.87514042	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				23.671	23.671	2	5.7215E-05	16865	DP1063-2	177.93	130.94			NaN	NaN	NaN	0	0	Median	8415200	0	8415200	1063	281	1000	2094	4600;4601	4600		2	9606
GDECGLALGR	0	1	Unmodified	1046.4815	0.48149296	335	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	2	0		1				16.652	16.652	2	0.051977	7594	DP1063-2	76.478	44.543			NaN	NaN	NaN	0	0	Median	5802700	0	5802700	1064	335	1001	2095	4602	4602		1	9606
GDEELDSLIK	1	0	Unmodified	1117.5503	0.55028404	144	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	19.445	19.445	2	0.0037246	12665	DP1063-5	97.635	49.074			1.3826	1.1703	NaN	1	0	Median	14704000	5245500	9458300	1065	144	1002	2096	4603;4604;4605	4604		3	9606
GDFCIQVGR	0	1	Unmodified	1050.4917	0.49166372	171;196	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	0	0	5	0					1	18.125	18.125	2	0.0074865	10908	DP1063-5	98.997	67.767			2.5229	1.8842	NaN	1	0	Median	42646000	11325000	31322000	1066	196;171	1003	2097	4606;4607;4608	4607		3	9606
GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK	1	1	Oxidation (M)	3833.906	0.9060104	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	1	3	0			1			19.762	19.762	5	0.0016475	13326	DP1063-3	44.347	44.347			0.6396	0.58012	NaN	1	0	Median	32062000	18650000	13412000	1067	323	1004	2098	4609	4609	396	1	9606
GDGPICLVLAPTR	0	1	Unmodified	1367.7231	0.72312022	178;568	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			20.835	20.835	2	0.0022631	14764	DP1063-3	99.283	74.044			1.8467	1.3197	NaN	1	0	Median	17523000	4755600	12768000	1068	568;178	1005	2099	4610;4611	4610		2	9606
GDGPVQGIINFEQK	1	0	Unmodified	1500.7573	0.75725712	93	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	5	0					1	20.235	20.235	2	0.0024659	13699	DP1063-5	125.97	125.97			1.3002	1.1006	NaN	1	0	Median	5952400	2708500	3243900	1069	93	1006	2100	4612	4612		1	9606
GDHAWSFLK	1	0	Acetyl (Protein N-term)	1101.5243	0.52434406	158	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	1	0	0	4	0				1		20.782	20.782	2	0.023623	14252	DP1063-4	93.162	49.355			1.6384	1.1341	NaN	1	0	Median	5631500	2072200	3559400	1070	158	1007	2101	4613;4614	4613		2	9606
GDLGIEIPAEK	1	0	Unmodified	1140.6027	0.60265396	168	P14618;P30613	PKM;PKLR	Pyruvate kinase PKM;Pyruvate kinase PKLR	yes	no	0	0	0	3	0			1			18.985	18.985	2	0.001293	12286	DP1063-3	112.71	42.899			0.71629	0.57518	NaN	1	0	Median	46715000	20850000	25864000	1071	168	1008	2102	4615;4616	4616		2	9606
GDLGPASPSQELGSQPVPGGDGAPALGK	1	0	Unmodified	2558.2613	0.26125966	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.5	0.5		2	2			19.295	19.295	2;3	4.358E-26	11113	DP1063-2	214.34	184.76			NaN	NaN	NaN	0	0	Median	155980000	0	155980000	1072	524	1009	2103;2104;2105;2106	4617;4618;4619;4620;4621;4622;4623;4624;4625;4626;4627	4618		11	9606
GDSVIVVLR	0	1	Unmodified	956.56548	0.56548059	379	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	18.767	18.767	2	0.017477	11771	DP1063-5	82.241	39.844			2.2061	1.6476	NaN	1	0	Median	14251000	4993300	9257400	1073	379	1010	2107	4628;4629	4629		2	9606
GDTPGHATPGHGGATSSAR	0	1	Unmodified	1732.7877	0.7877224	73	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				12.603	12.603	4	0.034461	2468	DP1063-2	58.672	28.984			NaN	NaN	NaN	0	0	Median	1911300	0	1911300	1074	73	1011	2108	4630	4630		1	9606
GEDFYCVTCHETK	1	0	Unmodified	1644.6548	0.65484224	476	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		16.38	16.38	3	0.0031861	8467	DP1063-4	74.987	73.669			2.0245	1.4013	NaN	1	0	Median	12784000	3771900	9011800	1075	476	1012	2109	4631;4632	4631		2	9606
GEGPDVDVNLPK	1	0	Unmodified	1238.6143	0.61428128	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	0	1					17.844	17.844	2	0.048483	7734	DP1063-1	73.887	8.26			NaN	NaN	NaN	0	0	Median	2498200	0	2498200	1076	455	1013	2110	4633	4633		1	9606
GEGQLGPAER	0	1	Unmodified	1012.4938	0.49377221	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				14.171	14.171	2	9.2465E-06	4286	DP1063-2	141.52	97.126			2.191	1.6844	NaN	1	0	Median	45633000	15197000	30435000	1077	165	1014	2111	4634;4635	4635		2	9606
GENSWFSTQVDTVATK	1	0	Unmodified	1768.8268	0.82679325	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				20.269	20.269	2	0.0031781	12472	DP1063-2	135.58	110.29			2.4282	2.0315	NaN	1	0	Median	22278000	8007000	14271000	1078	134	1015	2112	4636;4637;4638;4639	4638		4	9606
GESPVDYDGGR	0	1	Unmodified	1150.4891	0.48908076	502	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	4	0				1		15.406	15.406	2	0.011129	7105	DP1063-4	88.496	25.949			NaN	NaN	NaN	0	0	Median	2861300	0	2861300	1079	502	1016	2113	4640;4641	4641		2	9606
GEVAYIDGQVLVPPGYGQDVR	0	1	Unmodified	2231.1222	0.12224699	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					21.245	21.245	2	7.0116E-05	11893	DP1063-1	122.93	89.736			NaN	NaN	NaN	0	0	Median	3049200	0	3049200	1080	222	1017	2114	4642	4642		1	9606
GFAFISFHR	0	1	Unmodified	1080.5505	0.55049923	77	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	4	0				1		19.921	19.921	2	0.0036634	13124	DP1063-4	112.17	112.17			1.9314	1.1803	NaN	1	0	Median	8672200	2649800	6022400	1081	77	1018	2115	4643	4643		1	9606
GFAFVQYVNER	0	1	Unmodified	1328.6513	0.65133548	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.664	20.664	2	3.0989E-07	14032	DP1063-4	172.25	172.25			1.5596	1.0948	NaN	1	0	Median	25697000	10067000	15629000	1082	133	1019	2116	4644;4645	4645		2	9606
GFAFVTFDDHDSVDK	1	0	Unmodified	1698.7526	0.75256567	141	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		20.29	20.29	3	0.038485	13637	DP1063-4	42.242	22.072			1.9533	1.352	NaN	1	0	Median	5681100	2096300	3584800	1083	141	1020	2117	4646	4646		1	9606
GFAFVTFDDHDSVDKIVIQK	2	0	Unmodified	2280.1426	0.14264808	141	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		20.851	20.851	4	0.055753	14367	DP1063-4	37.851	4.7202			NaN	NaN	NaN	0	0	Median	3977600	0	3977600	1084	141	1021	2118	4647	4647		1	9606
GFCFLEYEDHK	1	0	Unmodified	1443.6129	0.61290107	64	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	no	no	0	0	0	3	0			1			19.53	19.53	3	0.034379	13058	DP1063-3	62.466	38.998			NaN	NaN	NaN	0	0	Median	7285300	0	7285300	1085	64	1022	2119	4648	4648		1	9606
GFCLPPHCSR	0	1	Unmodified	1229.5434	0.54338171	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		15.685	15.685	3	0.021173	7431	DP1063-4	72.243	54.184			NaN	NaN	NaN	0	0	Median	3894100	0	3894100	1086	162	1023	2120	4649;4650	4650		2	9606
GFEVVYMTEPIDEYCVQQLK	1	0	Oxidation (M)	2463.1338	0.13379923	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		2				21.728	21.728	2;3	2.7691E-17	14404	DP1063-2	201.09	76.717			1.9486	1.6302	10.639	2	0	Median	44099000	13525000	30574000	1087	135	1024	2121;2122	4651;4652;4653;4654;4655	4653	141	5	9606
GFEVVYMTEPIDEYCVQQLK	1	0	Unmodified	2447.1389	0.13888461	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		2				22.918	22.918	2	4.2946E-11	15932	DP1063-2	180.09	82.968			1.9043	1.5932	NaN	1	0	Median	11024000	3565700	7458500	1088	135	1024	2123;2124	4656;4657;4658;4659;4660	4658		5	9606
GFGFVCFSSPEEATK	1	0	Unmodified	1661.7396	0.73955814	156	P11940;Q9H361;Q13310;Q4VXU2	PABPC1;PABPC3;PABPC4;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1-like	yes	no	0	0	0	3	0			1			21.343	21.343	2	0.0026841	15459	DP1063-3	121.02	100.73			2.3132	1.8575	NaN	1	0	Median	14520000	5282100	9238400	1089	156	1025	2125	4661;4662	4662		2	9606
GFGFVLFK	1	0	Unmodified	913.50617	0.5061748	482	Q14103;O14979	HNRNPD;HNRNPDL	Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like	yes	no	0	0	0	4	0				1		22.688	22.688	2	0.041084	16502	DP1063-4	84.359	53.855			NaN	NaN	NaN	0	0	Median	7332800	0	7332800	1090	482	1026	2126	4663	4663		1	9606
GFGFVSFER	0	1	Unmodified	1044.5029	0.50288033	156	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	0	3	0			1			21.054	21.054	2	0.015334	15084	DP1063-3	85.212	55.045			2.3017	1.6624	NaN	1	0	Median	14512000	3979400	10532000	1091	156	1027	2127	4664	4664		1	9606
GFGFVTFDDHDPVDK	1	0	Unmodified	1694.7577	0.75765105	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		20.452	20.452	2	0.005391	13794	DP1063-4	95.094	72.896			NaN	NaN	NaN	0	0	Median	0	0	0	1092	197	1028	2128	4665	4665		1	9606
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	2	2 Oxidation (M)	2858.3116	0.31159745	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	2	1	4	0				1		20.738	20.738	4	0.0042267	14156	DP1063-4	65.111	41.229			NaN	NaN	NaN	0	0	Median	6591800	0	6591800	1093	197	1029	2129	4666	4666	247;248	1	9606
GFGFVTYATVEEVDAAMNAR	0	1	Oxidation (M)	2162.9943	0.99426928	141	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	0	4	0				1		22.678	22.678	2	0.0042907	16588	DP1063-4	103.76	82.51			NaN	NaN	NaN	0	0	Median	4625700	0	4625700	1094	141	1030	2130	4667	4667	149	1	9606
GFGFVTYATVEEVDAAMNARPHK	1	1	Oxidation (M)	2525.2009	0.20090801	141	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	4	0				1		20.586	20.586	4	0.00011151	14064	DP1063-4	79.88	79.88			2.6098	2.5374	NaN	1	0	Median	11010000	3424500	7585000	1095	141	1031	2131	4668;4669;4670	4670	149	3	9606
GFGHIGIAVPDVYSACK	1	0	Unmodified	1789.8821	0.88214006	443	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	5	0					1	19.896	19.896	3	0.0083645	13199	DP1063-5	55.815	39.322			2.0198	1.7097	NaN	1	0	Median	8503000	2859100	5643900	1096	443	1032	2132	4671	4671		1	9606
GFSGGMKDMYDQVLK	2	0	2 Oxidation (M)	1706.7644	0.76439269	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	2	1	1.33	0.471	2	1				16.614	16.614	2;3	0.00030601	6269	DP1063-1	109.44	109.44			1.2867	1.2932	4.5638	2	0	Median	232010000	97477000	134530000	1097	43;460	1033	2133;2134;2135	4672;4673;4674;4675;4676;4677;4678;4679;4680	4677	35;38	9	9606
GFSGGMKDMYDQVLK	2	0	Oxidation (M)	1690.7695	0.76947806	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	1	1	0	2					17.757	17.757	2;3	0.00048586	7599	DP1063-1	137.4	137.4			1.4778	1.4852	11.415	2	0	Median	23019000	9202100	13817000	1098	43;460	1033	2136;2137	4681;4682;4683;4684;4685;4686;4687	4685	35;38	7	9606
GFSLEELR	0	1	Unmodified	949.4869	0.48689592	214	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					1	19.835	19.835	2	0.0057899	13161	DP1063-5	120.49	83.395			2.0672	1.5439	NaN	1	0	Median	31037000	9871800	21166000	1099	214	1034	2138	4688;4689	4688		2	9606
GFSSGSAVVSGGSR	0	1	Unmodified	1253.6	0.60002819	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	3	1.63	1		1		1	15.484	15.484	2	1.3984E-07	7442	DP1063-3	193.83	154.58		+	NaN	NaN	NaN	0	0	Median	114020000	114020000	0	1100	22	1035	2139;2140;2141	4690;4691;4692;4693;4694;4695	4692		6	9606
GFSVVADTPELQR	0	1	Unmodified	1417.7201	0.72014333	494	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	4	0				1		19.219	19.219	2	4.6411E-05	12199	DP1063-4	157.95	107.34			NaN	NaN	NaN	0	0	Median	5618200	0	5618200	1101	494	1036	2142	4696;4697	4697		2	9606
GFVDDIIQPSSTR	0	1	Unmodified	1433.7151	0.71505795	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.27	0.617			9	1	1	21.761	21.761	2	1.8087E-79	13881	DP1063-3	289.67	231.24			1.3671	0.99242	15.259	3	0	Median	413080000	172280000	240810000	1102	111	1037	2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153	4698;4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709;4710;4711;4712;4713;4714;4715	4700		18	9606
GGAEQFMEETER	0	1	Oxidation (M)	1398.5722	0.57215846	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	3	0			1			15.601	15.601	2	1.3477E-13	7564	DP1063-3	199.33	162.27			4.711	3.5	NaN	1	0	Median	29027000	5043400	23983000	1103	601	1038	2154	4716;4717;4718;4719	4716	729	4	9606
GGAEQFMEETER	0	1	Unmodified	1382.5772	0.57724384	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			17.819	17.819	2	2.6645E-16	10660	DP1063-3	217.02	153.94			NaN	NaN	NaN	0	0	Median	10592000	0	10592000	1104	601	1038	2155	4720;4721	4720		2	9606
GGAYYPVTVK	1	0	Unmodified	1053.5495	0.54949617	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.878	16.878	2	0.0134	9362	DP1063-3	80.219	57.727			1.3687	1.099	NaN	1	0	Median	265640000	104730000	160900000	1105	624	1039	2156	4722;4723;4724;4725	4724		4	9606
GGEASGTSDGGPPPSR	0	1	Unmodified	1427.6277	0.62769951	46	O14641	DVL2	Segment polarity protein dishevelled homolog DVL-2	yes	yes	0	0	0	2	0		1				12.83	12.83	2	0.023171	2730	DP1063-2	80.17	35.852			NaN	NaN	NaN	0	0	Median	0	0	0	1106	46	1040	2157	4726	4726		1	9606
GGGAFVQNSQPVAVR	0	1	Unmodified	1485.7688	0.76882486	243	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	2	0		1				16.711	16.711	2	0.00022387	7667	DP1063-2	130.98	94.289			NaN	NaN	NaN	0	0	Median	8019100	0	8019100	1107	243	1041	2158	4727;4728;4729	4728		3	9606
GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR	0	1	Unmodified	2398.0111	0.011133407	22	CON__P35908v2;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.63	1		1		1	20.946	20.946	2	1.1698999999999999E-52	14979	DP1063-3	313.76	272.28		+	NaN	NaN	NaN	0	0	Median	26895000	26895000	0	1108	22	1042	2159;2160;2161	4730;4731;4732;4733;4734	4733		5	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	0	1	Unmodified	2382.9446	0.94456998	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.17	1.07	2	2	1	1		15.045	15.045	2;3	3.0684E-173	6783	DP1063-3	364.14	246.66		+	NaN	NaN	NaN	0	0	Median	122550000	122550000	0	1109	101	1043	2162;2163;2164;2165;2166;2167	4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745;4746;4747;4748	4745		14	9606
GGGGNFGPGPGSNFR	0	1	Unmodified	1376.6222	0.62216062	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.894	16.894	2	0.0021733	8925	DP1063-4	110.08	71.99			1.8528	1.2739	NaN	1	0	Median	21834000	7548000	14286000	1110	197	1044	2168	4749;4750;4751;4752	4749		4	9606
GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR	0	1	Unmodified	2704.1538	0.15383448	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.33	1.11	2	1	2	1		20.884	20.884	2;3	5.3469E-112	14829	DP1063-3	313.74	278.99		+	NaN	NaN	NaN	0	0	Median	100780000	100780000	0	1111	251	1045	2169;2170;2171;2172;2173;2174	4753;4754;4755;4756;4757;4758;4759;4760;4761;4762;4763;4764;4765;4766	4761		14	9606
GGGHVAQIYAIR	0	1	Unmodified	1240.6677	0.66765425	370	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					2	16.035	16.035	2;3	0.0019826	8362	DP1063-5	82.417	82.417			2.1407	1.5988	NaN	1	0	Median	48194000	14826000	33368000	1112	370	1046	2175;2176	4767;4768;4769;4770	4769		4	9606
GGGQIIPTAR	0	1	Unmodified	968.54033	0.54032847	165;499	P13639;Q15029	EEF2;EFTUD2	Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component	no	no	0	0	0	2	0		1				15.836	15.836	2	0.01763	6520	DP1063-2	88.37	54.197			NaN	NaN	NaN	0	0	Median	35075000	0	35075000	1113	165;499	1047	2177	4771	4771		1	9606
GGKPEPPAMPQPVPTA	1	0	Oxidation (M)	1588.7919	0.79192806	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	1	4	0				1		15.743	15.743	2	0.00034457	7522	DP1063-4	85.672	85.672			1.1893	0.82322	NaN	1	0	Median	13234000	5717500	7516300	1114	200	1048	2178	4772;4773;4774;4775	4775	256	4	9606
GGNFGFGDSR	0	1	Unmodified	1012.4363	0.43625733	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.138	17.138	2	0.046576	9384	DP1063-4	63.534	63.534			2.219	1.4859	NaN	1	0	Median	17749000	5674000	12075000	1115	197	1049	2179	4776	4776		1	9606
GGNRFEPYANPTKR	1	2	Unmodified	1605.8012	0.80118762	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	2	3	0			1			14.612	14.612	4	0.055235	6295	DP1063-3	45.825	45.825			1.1156	1.2324	NaN	1	0	Median	14522000	7080100	7441600	1116	323	1050	2180	4777	4777		1	9606
GGPAEGQLQENDR	0	1	Unmodified	1369.6222	0.6222202	450	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1	0	1					14.48	14.48	2	6.5402E-05	3912	DP1063-1	146.71	98.842			NaN	NaN	NaN	0	0	Median	2104200	0	2104200	1117	450	1051	2181	4778;4779	4779		2	9606
GGSGGGGSISGGGYGSGGGSGGR	0	1	Unmodified	1740.7412	0.74116614	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.5	1.12	1	1	1	1		14.074	14.074	2	4.6333E-67	5585	DP1063-3	284.24	248.57		+	NaN	NaN	NaN	0	0	Median	31227000	31227000	0	1118	22	1052	2182;2183;2184;2185	4780;4781;4782;4783;4784;4785;4786;4787	4785		8	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	1	0	Unmodified	3222.2743	0.27429656	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.5	1.12	1	1	1	1		15.247	15.247	3	8.763599999999998E-50	4854	DP1063-1	221.86	221.86		+	NaN	NaN	NaN	0	0	Median	97609000	97609000	0	1119	251	1053	2186;2187;2188;2189	4788;4789;4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801	4789		14	9606
GGSGGSYGGGGSGGGYGGGSGSR	0	1	Unmodified	1790.7204	0.72043069	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.6	1.02	1	1	2	1		13.751	13.751	2;3	2.487E-97	5126	DP1063-3	307.07	118.44		+	NaN	NaN	NaN	0	0	Median	120690000	120690000	0	1120	251	1054	2190;2191;2192;2193;2194	4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812	4808		11	9606
GGSGSGPTIEEVD	0	0	Unmodified	1203.5255	0.52552585	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.506	17.506	2	0.018811	10149	DP1063-3	83.647	48.202			NaN	NaN	NaN	0	0	Median	0	0	0	1121	149	1055	2195	4813;4814	4813		2	9606
GGSISGGGYGSGGGK	1	0	Unmodified	1196.5422	0.54217896	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					13.649	13.649	2	0.010507	3012	DP1063-1	91.123	61.974		+	NaN	NaN	NaN	0	0	Median	5355300	5355300	0	1122	22	1056	2196	4815;4816	4816		2	9606
GGSSSGGGYGSGGGGSSSVK	1	0	Unmodified	1587.6761	0.67610626	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					12.908	12.908	2	0.00017683	2208	DP1063-1	128.95	106.61		+	NaN	NaN	NaN	0	0	Median	1358800	1358800	0	1123	22	1057	2197	4817;4818	4817		2	9606
GGSWVVIDSSINPR	0	1	Unmodified	1485.7576	0.75759147	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	2	1	1	1		20.286	20.286	2;3	1.6651999999999998E-28	10676	DP1063-1	231.42	231.42			1.2287	1.0367	5.8998	5	0	Linear	296580000	131750000	164830000	1124	460	1058	2198;2199;2200;2201;2202	4819;4820;4821;4822;4823;4824;4825;4826;4827;4828;4829;4830;4831;4832;4833;4834	4822		16	9606
GHENVEAAQAEYIEK	1	0	Unmodified	1686.7849	0.78492843	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			2	2	2	15.654	15.654	2;3	7.0366E-30	7668	DP1063-3	267.77	241.66			1.4063	1.0988	19.445	6	0	Median	723890000	284830000	439050000	1125	111	1059	2203;2204;2205;2206;2207;2208	4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850;4851;4852;4853;4854	4840		20	9606
GHFGPINSVAFHPDGK	1	0	Unmodified	1678.8216	0.82158871	469	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				1		17.311	17.311	3	0.00026614	9568	DP1063-4	112.03	112.03			1.5929	1.1026	NaN	1	0	Median	9189300	3455400	5733800	1126	469	1060	2209	4855;4856;4857	4855		3	9606
GHLENNPALEK	1	0	Unmodified	1220.6149	0.61494998	115	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	3.67	0.471			1	2		13.744	13.744	2;3	2.0066E-05	4977	DP1063-4	145.99	79.689			1.435	0.99326	14.214	3	0	Plateau	33279000	14038000	19241000	1127	115	1061	2210;2211;2212	4858;4859;4860;4861;4862;4863;4864;4865	4861		8	9606
GHNQPCLLVGSGR	0	1	Unmodified	1393.6885	0.68846605	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	2					15.564	15.564	2	0.020486	5233	DP1063-1	82.261	36.259			NaN	NaN	NaN	0	0	Median	0	0	0	1128	222	1062	2213;2214	4866;4867	4867		2	9606
GHVFEESQVAGTPMFVVK	1	0	Oxidation (M)	1976.9666	0.96659797	165	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	2	0		2				18.534	18.534	2;3	2.0729E-07	10133	DP1063-2	192.4	158.22			2.1568	1.8044	NaN	1	0	Median	36984000	10163000	26821000	1129	165	1063	2215;2216	4868;4869;4870;4871;4872;4873;4874	4874	207	7	9606
GHYTEGAELVDSVLDVVR	0	1	Unmodified	1957.9745	0.97452012	414;129;480;471	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			2	2		22.82	22.82	2;3	3.367E-251	17335	DP1063-3	412.2	412.2			2.3442	2.0104	29.197	4	0	Linear	277080000	95443000	181630000	1130	129;414;480;471	1064	2217;2218;2219;2220	4875;4876;4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891	4880		17	9606
GHYTEGAELVDSVLDVVRK	1	1	Unmodified	2086.0695	0.069483134	414;129;480;471	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	1	3.33	0.471			2	1		21.703	21.703	2;3	1.6957E-73	15864	DP1063-3	278.19	278.19			2.6315	2.4711	3.839	2	0	Median	92870000	23863000	69007000	1131	129;414;480;471	1065	2221;2222;2223	4892;4893;4894;4895;4896	4892		5	9606
GIDPFSLDALSK	1	0	Unmodified	1261.6554	0.65541781	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			22.191	22.191	2	0.0013656	16516	DP1063-3	110.38	16.072			4.2804	3.4371	NaN	1	0	Median	23058000	3519000	19539000	1132	268	1066	2224	4897;4898	4897		2	9606
GIDQCIPLFVEAALER	0	1	Unmodified	1829.9346	0.93456956	84	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				25.148	25.148	2	0.0030785	18666	DP1063-2	108.72	63.869			NaN	NaN	NaN	0	0	Median	3081400	0	3081400	1133	84	1067	2225	4899;4900;4901	4900		3	9606
GIDVQQVSLVINYDLPTNR	0	1	Unmodified	2143.1273	0.12733236	350	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	no	0	0	0	4	0				1		22.769	22.769	2	1.1086E-05	16650	DP1063-4	179.65	147.12			NaN	NaN	NaN	0	0	Median	3659200	0	3659200	1134	350	1068	2226	4902;4903	4902		2	9606
GIEILTDMSRPVELSDRETLLNSATTSLNSK	1	2	Oxidation (M)	3405.7297	0.72972832	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	2	3	0			1			20.626	20.626	3	0.027835	14526	DP1063-3	51.16	26.363			NaN	NaN	NaN	0	0	Median	6505500	0	6505500	1135	320	1069	2227	4904	4904	386	1	9606
GIEQAVQSHAVAEEEAR	0	1	Unmodified	1822.881	0.88095408	522	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	2	0		1				17.046	17.046	3	0.0001554	8043	DP1063-2	96.096	83.95			1.5731	1.1375	NaN	1	0	Median	18325000	7294400	11031000	1136	522	1070	2228	4905;4906;4907	4905		3	9606
GIGMGNIGPAGMGMEGIGFGINK	1	0	3 Oxidation (M)	2225.0279	0.027894369	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	3	0	2.5	0.5		1	1			19.7	19.7	2	8.226E-11	11684	DP1063-2	161.94	161.94			1.3025	1.0676	7.4645	2	0	Median	55385000	25454000	29931000	1137	323	1071	2229;2230	4908;4909;4910;4911;4912;4913;4914;4915	4909	397;398;399	8	9606
GIHPTIISESFQK	1	0	Unmodified	1455.7722	0.7721789	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			2			17.603	17.603	2;3	0.00015729	10369	DP1063-3	134.75	103.61			3.3429	2.6844	1.678	2	0	Median	77090000	18639000	58451000	1138	320	1072	2231;2232	4916;4917;4918;4919	4918		4	9606
GILAADESTGSIAK	1	0	Unmodified	1331.6933	0.69325988	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		17.287	17.287	2	1.503E-05	9521	DP1063-4	172.21	116.2			2.4798	1.7164	NaN	1	0	Median	35103000	10424000	24679000	1139	98	1073	2233	4920;4921;4922;4923	4921		4	9606
GILADEDSSRPVWLK	1	1	Unmodified	1684.8784	0.87843489	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	0	1					19.632	19.632	3	0.014081	9876	DP1063-1	81.703	38.387			NaN	NaN	NaN	0	0	Median	6569800	0	6569800	1140	303	1074	2234	4924;4925	4924		2	9606
GILLQLFGGTR	0	1	Unmodified	1173.687	0.68699271	244	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	2	0		1				23.552	23.552	2	0.0022723	16751	DP1063-2	105.52	76.371			2.4824	1.9169	NaN	1	0	Median	5406700	1818200	3588500	1141	244	1075	2235	4926	4926		1	9606
GILQELFLNK	1	0	Unmodified	1173.6758	0.67575932	593	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				23.668	23.668	2	0.045731	16866	DP1063-2	79.713	36.062			NaN	NaN	NaN	0	0	Median	0	0	0	1142	593	1076	2236	4927	4927		1	9606
GINSSNVENQLQATQAAR	0	1	Unmodified	1899.9399	0.93986594	324	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			17.532	17.532	2	1.6211E-12	10283	DP1063-3	210.38	167.95			NaN	NaN	NaN	0	0	Median	12623000	0	12623000	1143	324	1077	2237	4928;4929	4929		2	9606
GIPAPEEER	0	1	Unmodified	996.48762	0.4876242	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		15.011	15.011	2	0.015747	6587	DP1063-4	84.498	62.538			1.0818	0.71185	NaN	1	0	Median	15480000	7511800	7967900	1144	86	1078	2238	4930	4930		1	9606
GIPAPEEERTR	0	2	Unmodified	1253.6364	0.6364137	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	1	4	0				2		14.133	14.133	2;3	0.0014784	5487	DP1063-4	97.734	97.734			1.2018	1.0776	19.277	2	0	Median	9078300	3953500	5124800	1145	86	1079	2239;2240	4931;4932;4933;4934;4935	4933		5	9606
GIPHLVTHDAR	0	1	Unmodified	1214.652	0.65200419	383	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	4.5	0.5				1	1	14.509	14.509	3	0.0028108	5965	DP1063-4	86.344	86.344			1.9202	1.3573	0.55994	2	0	Median	32141000	11657000	20484000	1146	383	1080	2241;2242	4936;4937;4938;4939;4940;4941	4938		6	9606
GIRPAINVGLSVSR	0	2	Unmodified	1437.8416	0.84159587	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			2			17.871	17.871	2;3	0.0013853	10698	DP1063-3	121.02	92.844			1.5911	1.4547	11.144	2	0	Median	66474000	22407000	44067000	1147	207	1081	2243;2244	4942;4943;4944;4945	4944		4	9606
GISDLAQHYLMR	0	1	Oxidation (M)	1418.6976	0.69763375	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			19.567	19.567	3	0.0017613	13052	DP1063-3	97.452	65.974			NaN	NaN	NaN	0	0	Median	15635000	0	15635000	1148	304	1082	2245	4946;4947	4946	367	2	9606
GISEETTTGVHNLYK	1	0	Unmodified	1647.8104	0.8104149	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	4	0				2		16.604	16.604	2;3	1.772E-34	8618	DP1063-4	252.97	200.24			2.3967	1.6589	NaN	1	0	Median	25307000	6518500	18788000	1149	201	1083	2246;2247	4948;4949;4950;4951;4952;4953;4954	4952		7	9606
GISHVIVDEIHER	0	1	Unmodified	1502.7841	0.78414057	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				17.031	17.031	3	0.00011323	8064	DP1063-2	113.69	113.69			2.4023	1.7506	NaN	1	0	Median	23410000	9448100	13962000	1150	452	1084	2248	4955;4956;4957	4956		3	9606
GISQEQMQEFR	0	1	Oxidation (M)	1367.614	0.6139637	60	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	1	0	2	0		1				15.634	15.634	2	0.035376	6260	DP1063-2	81.525	47.436			NaN	NaN	NaN	0	0	Median	8066200	0	8066200	1151	60	1085	2249	4958	4958	52	1	9606
GITINAAHVEYSTAAR	0	1	Unmodified	1672.8533	0.85328277	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		17.165	17.165	3	0.00025122	9330	DP1063-4	139.77	120.08			2.1046	1.451	NaN	1	0	Median	22304000	7210900	15093000	1152	306	1086	2250	4959;4960;4961	4959		3	9606
GITNLCVIGGDGSLTGANLFR	0	1	Unmodified	2134.0841	0.08408734	433	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	2	0		1				22.979	22.979	2	3.9282E-14	16015	DP1063-2	200.63	154.74			NaN	NaN	NaN	0	0	Median	8156100	0	8156100	1153	433	1087	2251	4962;4963	4962		2	9606
GIVDQSQQAYQEAFEISK	1	0	Unmodified	2039.98	0.97999942	404	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4	0				1		21.346	21.346	2	3.9064E-07	14913	DP1063-4	185.95	143.52			NaN	NaN	NaN	0	0	Median	5661000	0	5661000	1154	404	1088	2252	4964;4965	4965		2	9606
GIVDQSQQAYQEAFEISKK	2	0	Unmodified	2168.075	0.074962442	404	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	1	5	0					1	20.178	20.178	3	3.1689E-05	13589	DP1063-5	116.06	98.003			2.0284	1.982	NaN	1	0	Median	6075800	2503600	3572200	1155	404	1089	2253	4966	4966		1	9606
GIYAYGFEKPSAIQQR	1	1	Unmodified	1826.9315	0.93153309	350;264	P60842;Q14240;P38919	EIF4A1;EIF4A2;EIF4A3	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	no	no	0	0	1	4	0				2		18.139	18.139	2;3	0.0011287	10648	DP1063-4	150.9	124.1			2.2205	2.1588	7.7104	2	0	Median	36822000	11374000	25448000	1156	350;264	1090	2254;2255	4967;4968;4969;4970;4971;4972	4968		6	9606
GIYTGLSAGLLR	0	1	Unmodified	1219.6925	0.69247202	440	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		20.888	20.888	2	0.0004495	14359	DP1063-4	140.45	78.484			1.8492	1.1636	NaN	1	0	Median	10912000	4129300	6783100	1157	440	1091	2256	4973;4974;4975	4973		3	9606
GLAPDLPEDLYHLIK	1	0	Unmodified	1692.9087	0.90867238	375	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	22.673	22.673	2	0.0032369	16634	DP1063-5	133.42	133.42			1.8909	1.6006	NaN	1	0	Median	5290200	1934100	3356200	1158	375	1092	2257	4976;4977	4977		2	9606
GLAPVQAYLHIPDIIK	1	0	Unmodified	1747.0032	0.0032414695	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.71	1.07		11	2	2	2	26.114	26.114	2;3	0.00021459	23498	DP1063-2	100.4	69.823			1.1643	0.95227	15.954	14	0	Median	675090000	299430000	375650000	1159	154	1093	2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274	4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001;5002;5003;5004;5005;5006;5007;5008;5009;5010;5011;5012;5013;5014;5015	4988		38	9606
GLCAIAQAESLR	0	1	Unmodified	1287.6605	0.66051996	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4.5	0.5				1	1	18.922	18.922	2	2.1469E-13	11768	DP1063-4	200.56	150.85			2.4229	1.8619	1.0491	2	0	Median	83011000	25219000	57792000	1160	200	1094	2275;2276	5016;5017;5018;5019;5020;5021;5022	5017		7	9606
GLCGAIHSSIAK	1	0	Unmodified	1212.6285	0.62849155	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				2		15.581	15.581	2;3	0.00067363	7344	DP1063-4	123.86	93.177			1.7071	1.1816	11.816	2	0	Median	24361000	8126200	16235000	1161	258	1095	2277;2278	5023;5024;5025;5026;5027;5028	5024		6	9606
GLDVDSLVIEHIQVNK	1	0	Unmodified	1777.9574	0.95741349	184	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	20.986	20.986	3	0.00029822	14678	DP1063-5	90.853	90.853			1.7062	1.4443	NaN	1	0	Median	10625000	4064100	6561100	1162	184	1096	2279	5029;5030;5031	5030		3	9606
GLFIIDDK	1	0	Unmodified	919.50148	0.50148335	446;462	Q13162;Q06830	PRDX4;PRDX1	Peroxiredoxin-4;Peroxiredoxin-1	no	no	0	0	0	5	0					1	20.406	20.406	2	0.020667	13883	DP1063-5	94.662	65.324			2.6506	2.2437	NaN	1	0	Median	35000000	9611200	25389000	1163	462;446	1097	2280	5032	5032		1	9606
GLFIIDDKGILR	1	1	Unmodified	1358.7922	0.79218606	446;462	Q13162;Q06830	PRDX4;PRDX1	Peroxiredoxin-4;Peroxiredoxin-1	no	no	0	0	1	5	0					2	21.077	21.077	2;3	0.00031617	14755	DP1063-5	114.97	114.97			2.4573	2.0949	4.1586	2	0	Median	58759000	15159000	43600000	1164	462;446	1098	2281;2282	5033;5034;5035;5036;5037;5038	5038		6	9606
GLGTDEDSLIEIICSR	0	1	Unmodified	1776.8564	0.85637882	128	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	4	0				1		23.461	23.461	2	2.0723E-09	17453	DP1063-4	190.46	151.58			1.6929	1.0999	NaN	1	0	Median	6174400	1442900	4731500	1165	128	1099	2283	5039;5040;5041	5039		3	9606
GLGTDEDTLIEILASR	0	1	Unmodified	1701.8785	0.87849447	99	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	4	0				1		24.413	24.413	2	0.0016164	18560	DP1063-4	99.011	70.246			1.7304	1.3455	NaN	1	0	Median	2401500	840820	1560700	1166	99	1100	2284	5042;5043;5044;5045	5043		4	9606
GLGTDEESILTLLTSR	0	1	Unmodified	1703.8941	0.89414453	138	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	4	0				1		24.745	24.745	2	0.0013657	18958	DP1063-4	138.89	107.71			2.2186	1.4938	NaN	1	0	Median	5118800	1450700	3668200	1167	138	1101	2285	5046;5047;5048;5049	5047		4	9606
GLLPQLLGVAPEK	1	0	Unmodified	1333.7969	0.79693709	647	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	3	0			1			22.075	22.075	2	0.022448	16430	DP1063-3	72.652	0			1.5751	1.2648	NaN	1	0	Median	6475300	3351600	3123700	1168	647	1102	2286	5050	5050		1	9606
GLPWSCSADEVQR	0	1	Unmodified	1503.6776	0.67762659	237	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			1			18.814	18.814	2	0.0012428	11985	DP1063-3	119.34	67.89			NaN	NaN	NaN	0	0	Median	31659000	0	31659000	1169	237	1103	2287	5051;5052;5053	5051		3	9606
GLQAQIASSGLTVEVDAPK	1	0	Unmodified	1883	6.5851E-06	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		20.278	20.278	2	0.0087123	13567	DP1063-4	92.039	47.274			NaN	NaN	NaN	0	0	Median	0	0	0	1170	118	1104	2288	5054	5054		1	9606
GLQDVLR	0	1	Unmodified	799.4552	0.45520186	268	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	yes	no	0	0	0	3	0			1			18.052	18.052	2	0.029745	11032	DP1063-3	99.919	11.185			NaN	NaN	NaN	0	0	Median	31692000	0	31692000	1171	268	1105	2289	5055	5055		1	9606
GLSEDTTEETLKESFDGSVR	1	1	Unmodified	2199.0179	0.017901073	187	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		2				19.605	19.605	2;3	3.0036E-76	11576	DP1063-2	299.64	252.84			NaN	NaN	NaN	0	0	Median	7609800	0	7609800	1172	187	1106	2290;2291	5056;5057;5058;5059	5056		4	9606
GLSQSALPYR	0	1	Unmodified	1090.5771	0.57710791	375	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	17.093	17.093	2	0.00044222	9509	DP1063-5	122.18	47.921			1.5116	1.1289	NaN	1	0	Median	24060000	9572300	14488000	1173	375	1107	2292	5060;5061;5062	5060		3	9606
GLSSLLYGSIPK	1	0	Unmodified	1233.6969	0.69688869	329	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				2		21.598	21.598	2	0.0043817	15227	DP1063-4	99.788	46.699			NaN	NaN	NaN	0	0	Median	5018400	5018400	0	1174	329	1108	2293;2294	5063;5064	5063		2	9606
GLTSVINQK	1	0	Unmodified	958.54475	0.54474515	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		16.427	16.427	2	0.0070645	8491	DP1063-4	100.45	100.45			2.9145	2.0174	NaN	1	0	Median	55626000	13899000	41726000	1175	127	1109	2295	5065;5066	5066		2	9606
GLVEPVDVVDNADGTQTVNYVPSR	0	1	Unmodified	2543.2504	0.25036063	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	2					20.724	20.724	2;3	2.8462E-53	11189	DP1063-1	262.24	232.26			NaN	NaN	NaN	0	0	Median	21825000	0	21825000	1176	190	1110	2296;2297	5067;5068;5069	5068		3	9606
GLVGEIIKR	1	1	Unmodified	983.61277	0.61276513	171;196	P22392;P15531	NME2;NME1	Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A	no	no	0	0	1	5	0					1	17.257	17.257	2	0.0069907	9753	DP1063-5	101.64	58.52			NaN	NaN	NaN	0	0	Median	12823000	0	12823000	1177	196;171	1111	2298	5070;5071	5070		2	9606
GLVLDHGAR	0	1	Unmodified	936.51411	0.51411372	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			14.493	14.493	2	0.012968	6144	DP1063-3	89.296	55.207			4.2607	3.246	NaN	1	0	Median	40199000	8998600	31200000	1178	268	1112	2299	5072;5073;5074	5074		3	9606
GLVLIAFSQYLQQCPFDEHVK	1	0	Unmodified	2491.257	0.25696633	14	CON__P02769			yes	yes	0	0	0	3	0.816		3	3	3		24.107	24.107	2;3;4	5.5318E-30	18918	DP1063-3	238.67	192.39		+	NaN	NaN	NaN	0	0	Median	225770000	225770000	0	1179	14	1113	2300;2301;2302;2303;2304;2305;2306;2307;2308	5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092	5082		18	9606
GLVPEDDTKEK	2	0	Unmodified	1229.6139	0.61394692	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		2				14.406	14.406	2;3	0.006956	4638	DP1063-2	75.566	75.566			1.0959	1.0468	4.2844	2	0	Median	44272000	20039000	24233000	1180	513	1114	2309;2310	5093;5094;5095;5096;5097	5096		5	9606
GLYAAFDCTATMK	1	0	Oxidation (M)	1463.6425	0.64248664	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		18.782	18.782	2	0.00040876	11995	DP1063-3	125.74	110.11			1.4779	1.196	8.9351	3	0	Plateau	505120000	202400000	302720000	1181	154	1115	2311;2312;2313	5098;5099;5100;5101;5102;5103;5104;5105;5106;5107	5104	181	10	9606
GLYAAFDCTATMK	1	0	Unmodified	1447.6476	0.64757201	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			19.767	19.767	2	0.00024089	11810	DP1063-2	157.75	157.75			1.5512	1.2978	NaN	1	0	Median	97645000	34585000	63060000	1182	154	1115	2314;2315	5108;5109;5110;5111;5112	5110		5	9606
GMIQLIVAR	0	1	Oxidation (M)	1015.5848	0.58483582	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	1	0	2	0		1				18.36	18.36	2	0.025465	9904	DP1063-2	93.262	37.14			NaN	NaN	NaN	0	0	Median	6929000	0	6929000	1183	558	1116	2316	5113	5113	685	1	9606
GMSLNLEPDNVGVVVFGNDK	1	0	Oxidation (M)	2119.0256	0.025569409	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			21.802	21.802	2	1.7615E-07	16091	DP1063-3	164.66	130.61			1.2999	1.0438	NaN	1	0	Median	20095000	9236800	10858000	1184	207	1117	2317	5114;5115	5115	261	2	9606
GMTLVTPLQLLLFASK	1	0	Oxidation (M)	1746.9954	0.9953789	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	2	0		1				26.222	26.222	2	0.003833	19890	DP1063-2	72.496	72.496			1.8411	1.5403	NaN	1	0	Median	5065900	2101600	2964200	1185	452	1118	2318	5116;5117	5116	554	2	9606
GNAGQSNYGFANSAMER	0	1	Oxidation (M)	1788.7486	0.7485597	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	1.5	0.5	1	1				16.171	16.171	2	4.9829E-06	5856	DP1063-1	169.17	158.84			2.5805	2.0772	NaN	1	0	Median	22808000	3763300	19045000	1186	303	1119	2319;2320	5118;5119;5120;5121;5122;5123	5119	357	6	9606
GNAGQSNYGFANSAMER	0	1	Unmodified	1772.7536	0.75364508	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					17.515	17.515	2	7.0951E-08	7260	DP1063-1	194.98	127.46			NaN	NaN	NaN	0	0	Median	3759200	0	3759200	1187	303	1119	2321	5124;5125	5125		2	9606
GNDISSGTVLSDYVGSGPPK	1	0	Unmodified	1948.9378	0.93780026	232	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	5	0					1	19.971	19.971	2	0.00093872	13331	DP1063-5	113.59	84.962			NaN	NaN	NaN	0	0	Median	4140500	0	4140500	1188	232	1120	2322	5126	5126		1	9606
GNFGGSFAGSFGGAGGHAPGVAR	0	1	Unmodified	2033.9456	0.94562002	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3.17	1.07		2	2	1	1	18.416	18.416	2;3	9.4862E-29	11498	DP1063-3	201.3	170.97			1.1334	0.83875	16.373	6	0	Median	341990000	157860000	184130000	1189	323	1121	2323;2324;2325;2326;2327;2328	5127;5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145;5146	5139		20	9606
GNIPTLNR	0	1	Unmodified	883.48756	0.48756462	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				16.1	16.1	1;2	0.014064	5646	DP1063-1	104.45	64.802			1.2162	0.99666	14.61	3	0	Median	792970000	357800000	435160000	1190	460	1122	2329;2330;2331	5147;5148;5149;5150;5151;5152;5153;5154;5155	5149		8	9606
GNLANVIR	0	1	Unmodified	855.49265	0.49265	108;159;158	P05141;Q9H0C2;P12235;P12236	SLC25A5;SLC25A31;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	2.5	1.5	1			1		16.625	16.625	2	0.022741	8600	DP1063-4	92.467	47.745			2.4704	2.0781	NaN	1	0	Median	134830000	31887000	102940000	1191	108;158;159	1123	2332;2333	5156;5157;5158	5158		3	9606
GNLGAGNGNLQGPR	0	1	Unmodified	1323.6644	0.66435979	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				15.208	15.208	2	0.0024595	5694	DP1063-2	126.31	92.227			1.9046	1.4027	NaN	1	0	Median	9388500	4129400	5259100	1192	281	1124	2334	5159;5160	5159		2	9606
GNPTVEVDLFTSK	1	0	Unmodified	1405.7089	0.70890994	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		20.083	20.083	2	0.00073508	13298	DP1063-4	123.51	23.945			2.0699	1.4327	NaN	1	0	Median	40885000	14073000	26813000	1193	123	1125	2335	5161;5162;5163	5162		3	9606
GNTSGSHIVNHLVR	0	1	Unmodified	1489.775	0.77497287	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				14.328	14.328	3	0.00067513	4509	DP1063-2	94.191	94.191			6.6652	4.8166	NaN	1	0	Median	18962000	2121300	16840000	1194	569	1126	2336	5164;5165	5165		2	9606
GNVGFVFTK	1	0	Unmodified	967.51272	0.51271674	115	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				1		18.777	18.777	2	0.035805	11571	DP1063-4	69.598	49.078			1.8009	1.2466	NaN	1	0	Median	12911000	3978100	8933000	1195	115	1127	2337	5166;5167	5166		2	9606
GNVGFVFTKEDLTEIR	1	1	Unmodified	1823.9418	0.94176342	115	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	1	4	0				1		20.393	20.393	3	0.012892	13732	DP1063-4	61.732	43.063			2.9364	2.8549	NaN	1	0	Median	5603200	1295200	4308000	1196	115	1128	2338	5168	5168		1	9606
GNYDEGFGHRPHK	1	1	Unmodified	1512.6858	0.68582351	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	2	0		1				13.169	13.169	3	0.035195	3135	DP1063-2	68.515	30.521			NaN	NaN	NaN	0	0	Median	4232000	0	4232000	1197	644	1129	2339	5169	5169		1	9606
GPAGDATVASEKESVM	1	0	Oxidation (M)	1563.7087	0.70865195	515	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	1	1	3	0			1			15.157	15.157	2	3.94E-06	7058	DP1063-3	169.65	148.26			1.6276	1.307	NaN	1	0	Median	6644600	2340100	4304500	1198	515	1130	2340	5170;5171	5171	659	2	9606
GPAVGIDLGTTYSCVGVFQHGK	1	0	Unmodified	2262.1103	0.11030209	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			3			20.358	20.358	2;3	7.1386E-82	14135	DP1063-3	303.7	244.54			3.4836	2.7973	NaN	1	0	Median	86870000	14032000	72838000	1199	153	1131	2341;2342;2343	5172;5173;5174;5175	5173		4	9606
GPCIIYNEDNGIIK	1	0	Unmodified	1604.7868	0.78684269	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		19.225	19.225	2	0.0022013	12173	DP1063-4	131.82	96.308			2.0875	1.4449	NaN	1	0	Median	11761000	3936200	7824800	1200	259	1132	2344	5176;5177;5178	5178		3	9606
GPDNSMGFGAER	0	1	Oxidation (M)	1252.5142	0.51424965	74	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	1	0	2	0		1				14.837	14.837	2	0.0039615	5207	DP1063-2	109.42	88.517			NaN	NaN	NaN	0	0	Median	4857500	0	4857500	1201	74	1133	2345	5179;5180	5180	57	2	9606
GPFVEAEVPDVDLECPDAK	1	0	Unmodified	2085.9565	0.95648679	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1.5	0.5	1	1				21.063	21.063	2	0.00029853	11692	DP1063-1	130.2	88.957			NaN	NaN	NaN	0	0	Median	2920700	0	2920700	1202	455	1134	2346;2347	5181;5182	5181		2	9606
GPGASGEQPEPGEAAAGGAAEEAR	0	1	Unmodified	2164.9621	0.96211753	617	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	3	0			1			15.636	15.636	2	0.00092509	7683	DP1063-3	112.3	77.095			NaN	NaN	NaN	0	0	Median	0	0	0	1203	617	1135	2348	5183	5183		1	9606
GPGPLQER	0	1	Unmodified	852.44537	0.44536545	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				14.376	14.376	2	0.039266	4651	DP1063-2	79.469	22.291			1.5802	1.148	NaN	1	0	Median	14155000	5807000	8348100	1204	281	1136	2349	5184	5184		1	9606
GPHHLDNSSPGPGSEAR	0	1	Unmodified	1713.7819	0.78190874	560	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	2	0		2				12.708	12.708	3;4	0.00015513	2588	DP1063-2	112.12	81.293			1.5206	1.1776	NaN	1	0	Median	7354200	2109300	5244900	1205	560	1137	2350;2351	5185;5186;5187;5188;5189	5187		5	9606
GPLQSVQVFGR	0	1	Unmodified	1186.6459	0.64585618	370	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	19.513	19.513	2	1.0369E-13	12631	DP1063-5	197.3	197.3			1.6542	1.2355	NaN	1	0	Median	50218000	20965000	29253000	1206	370	1138	2352	5190;5191;5192;5193	5191		4	9606
GPNKHTLTQIK	2	0	Unmodified	1235.6986	0.69862003	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	1	3	0			1			12.81	12.81	3	0.029528	4132	DP1063-3	57.174	30.036			2.9714	2.666	NaN	1	0	Median	6352700	1806800	4545900	1207	268	1139	2353	5194	5194		1	9606
GPSSVEDIK	1	0	Unmodified	930.46583	0.46582612	125	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		14.675	14.675	2	0.017422	6125	DP1063-4	82.279	49.924			2.3361	1.617	NaN	1	0	Median	45247000	13436000	31811000	1208	125	1140	2354	5195;5196;5197;5198	5197		4	9606
GPSWDPFRDWYPHSR	0	2	Unmodified	1901.8598	0.85976513	104	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	1	5	0					2	20.928	20.928	3;4	0.001758	14563	DP1063-5	103.76	69.814			NaN	NaN	NaN	0	0	Median	10162000	0	10162000	1209	104	1141	2355;2356	5199;5200;5201	5200		3	9606
GPVGLEGLLTTK	1	0	Unmodified	1183.6812	0.68123863	335	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	2	0		1				20.983	20.983	2	0.045238	13489	DP1063-2	74.944	24.652			NaN	NaN	NaN	0	0	Median	4323900	0	4323900	1210	335	1142	2357	5202	5202		1	9606
GPVKPTGGPGGGGTQTQQQMNQLK	2	0	Oxidation (M)	2381.1758	0.17575589	213	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	1	1	3	0			1			13.921	13.921	3	3.6605E-08	5381	DP1063-3	121.33	121.33			1.8046	1.6192	NaN	1	0	Median	5199700	1698700	3501000	1211	213	1143	2358	5203;5204;5205;5206	5203	265	4	9606
GPVSGTEPEPVYSMEAADYR	0	1	Oxidation (M)	2169.9525	0.95246405	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	1	0	2.5	0.5		1	1			17.989	17.989	2	2.316E-07	10855	DP1063-3	180.85	155.13			NaN	NaN	NaN	0	0	Median	39061000	0	39061000	1212	488	1144	2359;2360	5207;5208;5209;5210;5211;5212	5212	621	6	9606
GPYESGSGHSSGLGHQESR	0	1	Unmodified	1927.8409	0.84088018	31	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	3	0			2			12.935	12.935	3;4	0.00046267	4242	DP1063-3	143.43	106.27		+	NaN	NaN	NaN	0	0	Median	7822500	7822500	0	1213	31	1145	2361;2362	5213;5214;5215	5214		3	9606
GPYESGSGHSSGLGHR	0	1	Unmodified	1583.7077	0.70768116	31	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	2.6	1.02	1	1	2	1		12.811	12.811	2;3	0.00019899	4007	DP1063-3	164.2	112.91		+	NaN	NaN	NaN	0	0	Median	53128000	53128000	0	1214	31	1146	2363;2364;2365;2366;2367	5216;5217;5218;5219;5220;5221;5222;5223	5221		8	9606
GQFSTDELVAEVEK	1	0	Unmodified	1550.7464	0.74641766	428	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1	0	1					20.683	20.683	2	0.029142	11186	DP1063-1	75.78	43.174			NaN	NaN	NaN	0	0	Median	0	0	0	1215	428	1147	2368	5224	5224		1	9606
GQFSTDELVAEVEKR	1	1	Unmodified	1706.8475	0.84752869	428	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	1	1	0	1					19.985	19.985	3	0.0014427	10327	DP1063-1	72.315	46.168			1.7614	1.6423	NaN	1	0	Median	7437300	2407900	5029400	1216	428	1148	2369	5225;5226	5226		2	9606
GQIGAPMPGK	1	0	Oxidation (M)	970.4906	0.49060109	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			14.041	14.041	2	0.0089289	5530	DP1063-3	77.318	55.081			1.1442	0.93784	3.7814	2	0	Median	164610000	75175000	89434000	1217	154	1149	2370;2371	5227;5228;5229	5228	182	3	9606
GQLCELSCSTDYR	0	1	Unmodified	1587.6657	0.66574127	602	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	4	0				1		17.497	17.497	2	0.0084743	9824	DP1063-4	91.03	56.824			NaN	NaN	NaN	0	0	Median	0	0	0	1218	602	1150	2372	5230	5230		1	9606
GQNLLQTQDHAK	1	0	Unmodified	1351.6844	0.68442653	284	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				14.259	14.259	2	0.00065971	4407	DP1063-2	128.27	42.915			NaN	NaN	NaN	0	0	Median	3331700	0	3331700	1219	284	1151	2373;2374	5231;5232;5233;5234	5233		4	9606
GQPAIIDGELYNEVK	1	0	Unmodified	1644.8359	0.83590137	663	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		19.861	19.861	2	0.0010396	12976	DP1063-4	120.55	73.263			NaN	NaN	NaN	0	0	Median	3374400	0	3374400	1220	663	1152	2375	5235;5236	5235		2	9606
GQSEDPGSLLSLFR	0	1	Unmodified	1504.7522	0.75217174	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2.5	0.5		1	1			23.512	23.512	2	3.3649E-13	16668	DP1063-2	196.67	153.95			1.9904	1.4643	2.9497	2	0	Median	37622000	11369000	26253000	1221	134	1153	2376;2377	5237;5238;5239;5240;5241;5242;5243	5238		7	9606
GQVGGDVNVEMDAAPGVDLSR	0	1	Oxidation (M)	2100.9746	0.97459647	12	CON__P02533;P02533;CON__Q6IFX2	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	1	0	2.67	1.25	1		1	1		18.523	18.523	2	0.00010386	11186	DP1063-4	158.14	130.2		+	NaN	NaN	NaN	0	0	Median	21903000	21903000	0	1222	12	1154	2378;2379;2380	5244;5245;5246;5247;5248;5249;5250	5249	9	7	9606
GQVLPAHTLLNTVDVELIYEGVK	1	0	Unmodified	2507.3635	0.36353989	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				23.039	23.039	3	9.2033E-08	16091	DP1063-2	115.5	115.5			1.2185	1.0006	1.693	2	0	Median	24373000	10652000	13722000	1223	460	1155	2381;2382	5251;5252;5253;5254;5255;5256	5255		6	9606
GSAITGPVAK	1	0	Unmodified	899.50763	0.50763136	388	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	14.298	14.298	2	0.015869	6245	DP1063-5	77.732	43.546			2.3938	2.0263	NaN	1	0	Median	45141000	13032000	32109000	1224	388	1156	2383	5257;5258	5257		2	9606
GSDFDCELR	0	1	Unmodified	1097.4448	0.44477311	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			16.919	16.919	2	0.011486	9399	DP1063-3	91.853	83.928			2.9088	2.1333	NaN	1	0	Median	24542000	4988100	19554000	1225	362	1157	2384	5259	5259		1	9606
GSGTAEVELKK	2	0	Unmodified	1117.5979	0.59790293	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	3	0			1			13.324	13.324	2	0.00010472	4717	DP1063-3	122.96	100.43			2.7108	2.4322	NaN	1	0	Median	9596900	2781900	6815100	1226	168	1158	2385	5260;5261;5262;5263	5262		4	9606
GSLGGGFSSGGFSGGSFSR	0	1	Unmodified	1706.7649	0.76486169	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.41	1	1	1	1	1	19.564	19.564	2	5.1816000000000005E-27	12622	DP1063-4	239.38	215.86		+	NaN	NaN	NaN	0	0	Median	170010000	170010000	0	1227	19	1159	2386;2387;2388;2389;2390	5264;5265;5266;5267;5268;5269;5270;5271;5272;5273	5271		10	9606
GSNMDFREPTEEER	0	2	Oxidation (M)	1711.7108	0.71077721	500	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	1	1	5	0					1	14.67	14.67	3	0.0081734	6694	DP1063-5	58.116	51.077			2.5613	2.1795	NaN	1	0	Median	8245900	2525800	5720100	1228	500	1160	2391	5274	5274	636	1	9606
GSNTFTVVPK	1	0	Unmodified	1048.5553	0.55530983	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	0			1			16.841	16.841	2	0.0043761	9268	DP1063-3	101.46	65.842			NaN	NaN	NaN	0	0	Median	79252000	0	79252000	1229	524	1161	2392	5275	5275		1	9606
GSQFGQSCCLR	0	1	Unmodified	1298.5496	0.5495893	131	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	0	1					15.836	15.836	2	0.010599	5491	DP1063-1	83.998	68.847			1.6769	1.4037	NaN	1	0	Median	2863700	1100000	1763700	1230	131	1162	2393	5276	5276		1	9606
GSRGGSGGSYGGGGSGGGYGGGSGSR	0	2	Unmodified	2090.875	0.87503386	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	4	0				1		12.97	12.97	3	0.02035	4167	DP1063-4	62.291	40.893		+	NaN	NaN	NaN	0	0	Median	3403500	3403500	0	1231	251	1163	2394	5277;5278	5278		2	9606
GSSGGGCFGGSSGGYGGLGGFGGGSFR	0	1	Unmodified	2341.9771	0.97705609	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.71	1.28	1	3	1	1	1	20.517	20.517	2	1.1997000000000001E-25	14334	DP1063-3	268.82	236.83		+	NaN	NaN	NaN	0	0	Median	64373000	64373000	0	1232	19	1164	2395;2396;2397;2398;2399;2400;2401	5279;5280;5281;5282;5283;5284;5285;5286;5287;5288	5285		10	9606
GSSGGSGAKPSDAASEAAR	1	1	Unmodified	1661.7605	0.7605046	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	1	0	1					12.762	12.762	3	0.00010013	2062	DP1063-1	108.71	79.924			3.2948	3.0721	NaN	1	0	Median	1258600	216840	1041700	1233	442	1165	2402	5289;5290	5289		2	9606
GSSGGSGAKPSDAASEAARPATSTLNR	1	2	Unmodified	2502.2059	0.20587005	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	2	1	0	1					14.891	14.891	4	0.00093892	4411	DP1063-1	72.227	52.028			NaN	NaN	NaN	0	0	Median	2961100	0	2961100	1234	442	1166	2403	5291	5291		1	9606
GSSSGGGYSSGSSSYGSGGR	0	1	Unmodified	1739.6983	0.69829827	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.41	1	1	1	1	1	13.841	13.841	2	7.761199999999999E-19	5244	DP1063-3	219.95	200.99		+	NaN	NaN	NaN	0	0	Median	37798000	37798000	0	1235	22	1167	2404;2405;2406;2407;2408	5292;5293;5294;5295;5296;5297;5298;5299;5300	5297		9	9606
GSSWHETCFICHR	0	1	Unmodified	1675.6984	0.69837881	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		16.16	16.16	3	0.0001082	8143	DP1063-4	125.82	98.409			1.3612	0.91724	NaN	1	0	Median	18652000	8916400	9735800	1236	485	1168	2409	5301;5302;5303;5304	5304		4	9606
GSTDNLMDDIER	0	1	Oxidation (M)	1380.5827	0.58272315	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	3	0			1			16.809	16.809	2	0.010813	9221	DP1063-3	94.297	61.691			NaN	NaN	NaN	0	0	Median	18869000	0	18869000	1237	319	1169	2410	5305;5306	5305	382	2	9606
GSVLEPEGTVEIK	1	0	Unmodified	1356.7137	0.71366097	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.86	1.12	4	1	1	1		19.745	19.745	2	0.00037315	8110	DP1063-1	155.11	118.05			1.1427	0.95604	21.145	5	0	Median	963830000	431920000	531900000	1238	460	1170	2411;2412;2413;2414;2415;2416;2417	5307;5308;5309;5310;5311;5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325	5307		19	9606
GSVLEPEGTVEIKFR	1	1	Unmodified	1659.8832	0.88318591	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.158	19.158	3	0.005005	9301	DP1063-1	69.258	44.843			1.3501	1.2588	NaN	1	0	Median	6585500	2949300	3636200	1239	460	1171	2418	5326;5327;5328	5327		3	9606
GSYGDLGGPIITTQVTIPK	1	0	Unmodified	1916.0255	0.025493054	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			21.067	21.067	2	0.00031243	15078	DP1063-3	122.12	94.966			1.9491	1.5651	NaN	1	0	Median	28976000	8127100	20849000	1240	362	1172	2419	5329;5330	5329		2	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	0	1	Unmodified	3311.3008	0.30084566	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.5	1.12	1	1	1	1		15.393	15.393	3	6.8158E-33	5018	DP1063-1	199.79	173.66		+	NaN	NaN	NaN	0	0	Median	125450000	125450000	0	1241	101	1173	2420;2421;2422;2423	5331;5332;5333;5334;5335;5336;5337;5338;5339;5340;5341;5342;5343;5344	5332		14	9606
GSYSCEVTHEGSTVTK	1	0	Unmodified	1740.7625	0.76247843	24	CON__Q1RMN8			yes	yes	0	0	0	5	0					2	14.594	14.594	2;3	5.2454E-17	6596	DP1063-5	217.09	156.69		+	NaN	NaN	NaN	0	0	Median	36610000	36610000	0	1242	24	1174	2424;2425	5345;5346;5347	5346		3	
GSYVSIHSSGFR	0	1	Unmodified	1295.6258	0.62584901	34	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	yes	no	0	0	0	4	0				1		16.157	16.157	2	0.04156	8125	DP1063-4	76.143	38.799			NaN	NaN	NaN	0	0	Median	2765000	0	2765000	1243	34	1175	2426	5348	5348		1	9606
GTDIMYTGTLDCWR	0	1	Oxidation (M)	1703.7283	0.72834153	108	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	0	4	0				1		20.004	20.004	2	1.8528E-05	13262	DP1063-4	165.63	151.73			1.7931	1.1797	NaN	1	0	Median	15457000	5248900	10208000	1244	108	1176	2427	5349;5350;5351;5352	5352	81	4	9606
GTEDITSPHGIPLDLLDR	0	1	Unmodified	1947.9902	0.99017018	662	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			1			21.015	21.015	2	0.01193	15092	DP1063-3	94.725	55.065			NaN	NaN	NaN	0	0	Median	7248600	0	7248600	1245	662	1177	2428	5353	5353		1	9606
GTEVQVDDIKR	1	1	Unmodified	1258.6517	0.65172941	660	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	1	3	0			1			14.859	14.859	3	0.027848	6607	DP1063-3	45.653	14.367			3.4316	3.1125	NaN	1	0	Median	11261000	3411000	7850300	1246	660	1178	2429	5354;5355	5355		2	9606
GTGGVDTAAVGGVFDVSNADR	0	1	Unmodified	1963.9235	0.92354718	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		20.102	20.102	3	0.00097049	13334	DP1063-4	99.313	61.719			NaN	NaN	NaN	0	0	Median	4326400	0	4326400	1247	162	1179	2430	5356;5357	5356		2	9606
GTGIVSAPVPK	1	0	Unmodified	1024.5917	0.59169534	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.236	16.236	2	0.041419	8227	DP1063-4	63.426	63.426			1.9583	1.3555	NaN	1	0	Median	47445000	17141000	30304000	1248	172	1180	2431	5358;5359	5359		2	9606
GTHFVQLCCQR	0	1	Unmodified	1404.6391	0.63907301	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		15.69	15.69	2;3	1.0086E-06	7719	DP1063-3	149.23	149.23			1.4951	1.4184	9.1878	4	0	Linear	790360000	305600000	484760000	1249	624	1181	2432;2433;2434;2435	5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373	5367		14	9606
GTIEILSDVQLIK	1	0	Unmodified	1427.8235	0.82354577	115	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		22.441	22.441	2	0.0009549	16237	DP1063-4	138.22	91.4			1.6725	1.1577	NaN	1	0	Median	12621000	4843800	7777600	1250	115	1182	2436	5374;5375	5374		2	9606
GTPLDTEVPMER	0	1	Oxidation (M)	1359.634	0.63403044	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.4	1.02	1	2	1	1		18.589	18.589	2	0.00027559	7904	DP1063-2	133.75	133.75			1.1212	0.78416	17.477	5	0	Plateau	686100000	318300000	367800000	1251	154	1183	2437;2438;2439;2440;2441	5376;5377;5378;5379;5380;5381;5382;5383;5384;5385;5386;5387;5388;5389;5390;5391;5392	5381	183	17	9606
GTPLDTEVPMER	0	1	Unmodified	1343.6391	0.63911582	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			18.185	18.185	2	4.0324E-28	9618	DP1063-2	232.72	232.72			1.2545	1.0111	0.15078	2	0	Median	244290000	108130000	136160000	1252	154	1183	2442;2443	5393;5394;5395;5396;5397;5398	5394		6	9606
GTVVTGTLER	0	1	Unmodified	1031.5611	0.56112349	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		15.775	15.775	2	0.00022874	7624	DP1063-4	126.24	77.146			1.9586	1.3406	NaN	1	0	Median	21081000	6861900	14219000	1253	306	1184	2444	5399;5400	5399		2	9606
GTYLATFHQR	0	1	Unmodified	1192.5989	0.59890598	340	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		2				16.093	16.093	2;3	0.016914	6910	DP1063-2	76.679	55.777			2.7907	2.018	NaN	1	0	Median	28717000	4945300	23771000	1254	340	1185	2445;2446	5401;5402	5401		2	9606
GVAPLWMR	0	1	Oxidation (M)	944.49021	0.49020716	426	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	4	0				1		18.236	18.236	2	0.021554	10791	DP1063-4	79.454	57.907			1.5425	1.0129	NaN	1	0	Median	15229000	5697800	9531500	1255	426	1186	2447	5403;5404	5403	539	2	9606
GVCTEAGMYALR	0	1	Oxidation (M)	1342.601	0.60095617	367	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	1	0	4	0				1		17.157	17.157	2	0.03754	9407	DP1063-4	57.55	37.409			0.59147	0.36387	NaN	1	0	Median	8224300	4140400	4083900	1256	367	1187	2448	5405	5405	461	1	9606
GVDDLDFFIGDEAIEKPTYATK	2	0	Unmodified	2443.1795	0.17948709	353	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	1	4	0				1		22.251	22.251	3	0.055428	15985	DP1063-4	58.914	34.492			NaN	NaN	NaN	0	0	Median	2241000	0	2241000	1257	353	1188	2449	5406	5406		1	9606
GVDLVLNSLAEEK	1	0	Unmodified	1385.7402	0.74021007	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				20.993	20.993	2	0.00080648	11539	DP1063-1	144.7	74.3			2.8196	2.2765	NaN	1	0	Median	12792000	3507000	9285000	1258	303	1189	2450;2451	5407;5408;5409;5410;5411	5407		5	9606
GVEEEEEDGEMRE	0	1	Oxidation (M)	1552.5835	0.58351101	377	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	1	5	0					1	14.421	14.421	2	2.6419E-05	6406	DP1063-5	162.36	162.36			2.5012	1.868	NaN	1	0	Median	6876300	1826700	5049600	1259	377	1190	2452	5412;5413;5414	5412	470	3	9606
GVEGLIDIENPNR	0	1	Unmodified	1424.726	0.72595699	470	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	5	0					1	20.028	20.028	2	0.0023256	13425	DP1063-5	107.55	81.491			NaN	NaN	NaN	0	0	Median	4024400	0	4024400	1260	470	1191	2453	5415;5416	5415		2	9606
GVEICIATPGR	0	1	Unmodified	1171.6019	0.60194245	178;568	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			18.23	18.23	2	0.0040446	11310	DP1063-3	103.7	67.253			NaN	NaN	NaN	0	0	Median	9270700	0	9270700	1261	568;178	1192	2454	5417;5418	5418		2	9606
GVFVQSVLPYFVATK	1	0	Unmodified	1653.913	0.91302948	527	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	4	0				1		23.591	23.591	2	0.0030284	17607	DP1063-4	99.752	79.089			1.568	1.0853	NaN	1	0	Median	4574400	1555400	3019100	1262	527	1193	2455	5419;5420	5419		2	9606
GVGIISEGNETVEDIAAR	0	1	Unmodified	1828.9167	0.91667089	107	P05023;P13637;P50993	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	yes	no	0	0	0	1.5	0.5	1	1				20.306	20.306	2	9.3318E-07	12579	DP1063-2	164.93	164.93			1.7298	1.2485	NaN	1	0	Median	23334000	9534200	13800000	1263	107	1194	2456;2457	5421;5422;5423;5424;5425	5424		5	9606
GVISDILDWK	1	0	Unmodified	1144.6128	0.61282471	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		23.669	23.669	2	2.2688E-07	17630	DP1063-4	166.52	111.79			1.3235	1.0169	33.799	4	0	Median	81250000	35546000	45704000	1264	460	1195	2458;2459;2460;2461	5426;5427;5428;5429;5430;5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441	5439		16	9606
GVIVDKDFSHPQMPK	2	0	Oxidation (M)	1712.8556	0.85559095	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	3	0			1			15.458	15.458	2	0.025948	7449	DP1063-3	80.737	51.204			NaN	NaN	NaN	0	0	Median	0	0	0	1265	301	1196	2462	5442	5442	354	1	9606
GVLLMLFGGVPK	1	0	Oxidation (M)	1245.7155	0.71551564	489	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	1	0	2	0		1				23.277	23.277	2	0.035722	16383	DP1063-2	81.594	38.511			NaN	NaN	NaN	0	0	Median	3375000	0	3375000	1266	489	1197	2463	5443	5443	622	1	9606
GVMLAVDAVIAELKK	2	0	Oxidation (M)	1571.8957	0.89566485	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	1	3	0			1			22.34	22.34	3	0.035292	16823	DP1063-3	64.374	42.053			NaN	NaN	NaN	0	0	Median	4246900	0	4246900	1267	151	1198	2464	5444	5444	163	1	9606
GVNLPGAAVDLPAVSEKDIQDLK	2	0	Unmodified	2348.2587	0.25874047	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	3	0			1			21.258	21.258	3	0.0003548	15411	DP1063-3	108.13	89.642			NaN	NaN	NaN	0	0	Median	8738900	0	8738900	1268	168	1199	2465	5445	5445		1	9606
GVSFTFGAEVVAK	1	0	Unmodified	1310.6871	0.68705229	365;260	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	4	1			1		1	20.464	20.464	2	0.0022408	14288	DP1063-3	108.47	45.647			NaN	NaN	NaN	0	0	Median	29477000	0	29477000	1269	260;365	1200	2466;2467	5446;5447;5448	5446		3	9606
GVTFLFPIQAK	1	0	Unmodified	1219.6965	0.69649476	629	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				22.267	22.267	2	0.0036744	15105	DP1063-2	97.635	97.635			1.7852	1.4936	NaN	1	0	Median	14409000	5041200	9367800	1270	629	1201	2468	5449;5450;5451;5452	5452		4	9606
GVTHNIALLR	0	1	Unmodified	1092.6404	0.64037687	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.522	16.522	2	0.00034226	7438	DP1063-2	124.08	124.08			1.4882	1.3253	6.7025	3	0	Median	536630000	201540000	335090000	1271	110	1202	2469;2470;2471	5453;5454;5455;5456;5457;5458;5459;5460	5454		8	9606
GVTIASGGVLPNIHPELLAK	1	0	Unmodified	1985.131	0.13096118	69	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		20.696	20.696	3	0.043538	14160	DP1063-4	39.351	39.351			1.3445	0.93065	NaN	1	0	Median	7353100	3486500	3866600	1272	69	1203	2472	5461	5461		1	9606
GVVDSDDLPLNVSR	0	1	Unmodified	1484.7471	0.74708636	169	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	0		1				19.443	19.443	2	0.00036474	11345	DP1063-2	158.08	158.08			1.9707	1.4665	NaN	1	0	Median	30397000	10191000	20205000	1273	169	1204	2473	5462;5463;5464	5462		3	9606
GVVDSEDLPLNISR	0	1	Unmodified	1512.7784	0.77838649	135;132	P08238;P07900	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	no	no	0	0	0	3	0.816		1	1	1		20.101	20.101	2	2.7121999999999998E-52	12253	DP1063-2	271.65	0			2.1747	1.8227	11.04	2	0	Median	392770000	118490000	274290000	1274	135;132	1205	2474;2475;2476	5465;5466;5467;5468;5469;5470;5471;5472;5473	5468		9	9606
GVVEVTHDLQK	1	0	Unmodified	1223.651	0.65100113	317	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	4	0				2		15.653	15.653	2	0.0094772	7477	DP1063-4	96.143	57.121			NaN	NaN	NaN	0	0	Median	0	0	0	1275	317	1206	2477;2478	5474;5475	5475		2	9606
GVVLSGAESLLEHSR	0	1	Unmodified	1552.8209	0.82092001	613	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	2	0		1				20.068	20.068	3	0.0010248	12210	DP1063-2	108.71	60.819			NaN	NaN	NaN	0	0	Median	0	0	0	1276	613	1207	2479	5476	5476		1	9606
GVVPLAGTDGETTTQGLDGLSER	0	1	Unmodified	2272.1183	0.11828382	143	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	4	0				2		20.368	20.368	2	0.00070099	13743	DP1063-4	89.506	62.795			1.8854	1.1921	NaN	1	0	Median	11325000	3714800	7609900	1277	143	1208	2480;2481	5477;5478	5477		2	9606
GVVPLAGTNGETTTQGLDGLSER	0	1	Unmodified	2271.1343	0.13426824	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		19.793	19.793	2	0.0027586	12994	DP1063-4	90.498	55.294			NaN	NaN	NaN	0	0	Median	5880200	5880200	0	1278	98	1209	2482	5479;5480	5480		2	9606
GVVQELQQAISK	1	0	Unmodified	1298.7194	0.71941505	228	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				2		21.28	21.28	2	5.3078E-06	14862	DP1063-4	150.81	84.243			NaN	NaN	NaN	0	0	Median	13933000	4172300	9761200	1279	228	1210	2483;2484	5481;5482;5483;5484	5482		4	9606
GVVVVIKR	1	1	Unmodified	868.58582	0.5858221	290	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	1	5	0					1	14.827	14.827	2	0.036409	6912	DP1063-5	51.572	19.102			2.227	1.8986	NaN	1	0	Median	4392400	1402000	2990500	1280	290	1211	2485	5485;5486	5486		2	9606
GWEEGVAQMSVGQR	0	1	Oxidation (M)	1548.6991	0.69909031	402	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	yes	yes	0	1	0	5	0					1	17.367	17.367	2	0.017189	9961	DP1063-5	87.713	62.475			NaN	NaN	NaN	0	0	Median	4883500	0	4883500	1281	402	1212	2486	5487	5487	495	1	9606
GWWYAHFDGPWIAR	0	1	Unmodified	1760.8212	0.82119478	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				22.623	22.623	3	0.034231	15502	DP1063-2	64.224	36.458			NaN	NaN	NaN	0	0	Median	3767600	0	3767600	1282	654	1213	2487	5488	5488		1	9606
GYAVLGGER	0	1	Unmodified	920.47158	0.4715802	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.618	16.618	2	0.010273	6280	DP1063-1	98.458	69.12			NaN	NaN	NaN	0	0	Median	19307000	0	19307000	1283	303	1214	2488	5489;5490	5489		2	9606
GYDVIAQAQSGTGK	1	0	Unmodified	1393.6838	0.68375782	350	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	no	0	0	0	4	0				1		17.033	17.033	2	0.0015866	9192	DP1063-4	120.86	120.86			2.4655	1.7065	NaN	1	0	Median	18656000	4840600	13815000	1284	350	1215	2489	5491;5492;5493	5493		3	9606
GYFEYIEENKYSR	1	1	Unmodified	1696.7733	0.77330111	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				18.961	18.961	3	0.00076499	10777	DP1063-2	115.92	86.791			NaN	NaN	NaN	0	0	Median	18106000	0	18106000	1285	429	1216	2490	5494;5495	5494		2	9606
GYGFVHFETQEAAER	0	1	Unmodified	1739.7903	0.79034816	156	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	3	0			2			18.327	18.327	2;3	0.00014482	11336	DP1063-3	154.65	142.69			2.8892	2.0762	NaN	1	0	Median	29561000	6052700	23509000	1286	156	1217	2491;2492	5496;5497;5498;5499	5496		4	9606
GYIFLEYASPAHAVDAVK	1	0	Unmodified	1949.9887	0.98871362	340	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		1				20.991	20.991	3	0.016259	13450	DP1063-2	79.347	52.023			NaN	NaN	NaN	0	0	Median	0	0	0	1287	340	1218	2493	5500	5500		1	9606
GYISPYFINTSK	1	0	Unmodified	1388.6976	0.69761697	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.97	19.97	2	1.0271E-05	13595	DP1063-3	169.76	138.94			2.4739	1.9866	NaN	1	0	Median	45349000	9880600	35469000	1288	151	1219	2494	5501;5502	5501		2	9606
GYLDKLEPSK	2	0	Unmodified	1148.6077	0.60773933	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			17.088	17.088	2	0.00046008	9653	DP1063-3	120.27	94.209			1.0707	0.96063	NaN	1	0	Median	17046000	9738100	7307400	1289	207	1220	2495	5503;5504	5503		2	9606
GYSFTTTAER	0	1	Unmodified	1131.5197	0.51965261	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4.67	0.471				1	2	16.596	16.596	2	2.5903E-07	8589	DP1063-4	164.96	164.96			3.0146	2.878	NaN	1	0	Median	285510000	67852000	217660000	1290	349;409	1221	2496;2497;2498	5505;5506;5507;5508;5509;5510	5508		6	9606
GYSYDLEVEQAYDLAR	0	1	Unmodified	1890.8636	0.86357268	225	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	5	0					1	21.472	21.472	2	0.0041538	15185	DP1063-5	102.66	81.289			NaN	NaN	NaN	0	0	Median	0	0	0	1291	225	1222	2499	5511	5511		1	9606
GYVKDVDDGLQAAEEVGYPVMIK	2	0	Oxidation (M)	2511.2203	0.22030605	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	3					20.916	20.916	2;3	3.2637E-11	11883	DP1063-1	163.92	163.92			1.0828	1.0883	5.0115	2	0	Median	56424000	24726000	31698000	1292	460	1223	2500;2501;2502	5512;5513;5514;5515;5516;5517;5518;5519	5514	564	8	9606
HALIIYDDLSK	1	0	Unmodified	1286.6871	0.68705229	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.383	18.383	2	0.0013686	11415	DP1063-3	125.71	40.97			NaN	NaN	NaN	0	0	Median	13784000	13784000	0	1293	207	1224	2503	5520;5521	5520		2	9606
HAMNLEAVNTYEGTHDIHALILGR	0	1	Oxidation (M)	2690.3235	0.32348276	571	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	1	0	4	0				1		19.067	19.067	4	0.00059912	11949	DP1063-4	84.025	58.768			NaN	NaN	NaN	0	0	Median	6006300	0	6006300	1294	571	1225	2504	5522;5523	5523	692	2	9606
HCSLQAVPEEIYR	0	1	Unmodified	1600.7668	0.76677595	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1	0	1					17.625	17.625	2	0.00012902	7408	DP1063-1	129.88	73.864			NaN	NaN	NaN	0	0	Median	0	0	0	1295	484	1226	2505	5524	5524		1	9606
HDLDLICR	0	1	Unmodified	1040.5073	0.50731378	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0.816			1	1	1	16.76	16.76	2	0.0046648	9057	DP1063-5	116.9	81.285			58.767	52.122	NaN	1	0	Median	497290000	3048600	494240000	1296	260;365;366	1227	2506;2507;2508	5525;5526;5527;5528;5529;5530	5530		6	9606
HEENPINPGVDQCCTSSYSNR	0	1	Unmodified	2463.0179	0.017934623	26	CON__Q3SZ57			yes	yes	0	0	0	3	0			1			15.958	15.958	3	0.00077175	8125	DP1063-3	101.48	89.009		+	NaN	NaN	NaN	0	0	Median	6577100	6577100	0	1297	26	1228	2509	5531;5532	5532		2	
HEEQPAPGYDTHGR	0	1	Unmodified	1592.6968	0.69678213	450	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1.5	0.5	1	1				12.811	12.811	3	0.00036329	2686	DP1063-2	119.87	89.429			NaN	NaN	NaN	0	0	Median	6250100	0	6250100	1298	450	1229	2510;2511	5533;5534;5535;5536	5535		4	9606
HELQANCYEEVKDR	1	1	Unmodified	1789.8053	0.8053463	202	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	5	0					1	14.542	14.542	3	0.00022814	6547	DP1063-5	141.06	118.71			2.335	1.9907	NaN	1	0	Median	19641000	5711200	13930000	1299	202	1230	2512	5537;5538;5539;5540	5539		4	9606
HEQNIDCGGGYVK	1	0	Unmodified	1475.6463	0.64632646	223	P27797	CALR	Calreticulin	yes	yes	0	0	0	3	0			1			14.332	14.332	3	0.0064758	5908	DP1063-3	63.662	52.716			2.7922	2.2422	NaN	1	0	Median	8248500	2065700	6182900	1300	223	1231	2513	5541;5542	5541		2	9606
HEVEKSEISENTDASGK	2	0	Unmodified	1858.8545	0.85446456	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	2	0		1				12.947	12.947	3	0.036391	2861	DP1063-2	115.66	78.716			NaN	NaN	NaN	0	0	Median	0	0	0	1301	644	1232	2514	5543	5543		1	9606
HFAGAVCYETTQFVEK	1	0	Unmodified	1885.8669	0.86688392	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				18.267	18.267	2	9.8291E-47	9751	DP1063-2	273.27	218.5			NaN	NaN	NaN	0	0	Median	15060000	0	15060000	1302	654	1233	2515	5544;5545	5544		2	9606
HFDETVNR	0	1	Unmodified	1016.4676	0.46755746	105	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	3	0			1			13.445	13.445	2	0.0057899	4878	DP1063-3	120.49	82.93			2.6173	1.9525	NaN	1	0	Median	10053000	2683800	7369500	1303	105	1234	2516	5546;5547	5547		2	9606
HFLQMLSLENCR	0	1	Oxidation (M)	1562.7334	0.73336733	561	Q8WX94	NLRP7	NACHT, LRR and PYD domains-containing protein 7	yes	yes	0	1	0	3	0			1			16.596	16.596	2	0.039427	8957	DP1063-3	80.755	20.847			NaN	NaN	NaN	0	0	Median	10133000	10133000	0	1304	561	1235	2517	5548	5548	689	1	9606
HFSGLEEAVYR	0	1	Unmodified	1306.6306	0.63060004	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			17.446	17.446	2	6.0048E-06	10096	DP1063-3	150.27	132.45			3.8701	2.909	NaN	1	0	Median	33768000	8080800	25688000	1305	319	1236	2518	5549;5550	5549		2	9606
HFSVEGQLEFR	0	1	Unmodified	1347.6571	0.65714914	135;132	P08238;Q58FF7;P07900;Q14568;Q58FG1	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA2P;HSP90AA4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4	no	no	0	0	0	2	0		2				18.502	18.502	2;3	4.2758E-20	10048	DP1063-2	217.66	181.75			2.5731	2.0039	9.4567	2	0	Median	112890000	32971000	79917000	1306	135;132	1237	2519;2520	5551;5552;5553;5554;5555;5556;5557;5558	5551		8	9606
HFVALSTNTTK	1	0	Unmodified	1217.6404	0.64043645	124	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	3	0			1			14.94	14.94	2	0.0034474	6784	DP1063-3	110.53	66.184			NaN	NaN	NaN	0	0	Median	7464600	0	7464600	1307	124	1238	2521	5559;5560	5560		2	9606
HGEEVTPEDVLSAAMYPDVFAHFK	1	0	Oxidation (M)	2704.2479	0.24791778	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.25	0.433		3	1			22.44	22.44	2;3;4	7.3055E-16	15340	DP1063-2	190.11	184.45			1.1393	0.95313	8.1703	4	0	Median	456870000	206650000	250230000	1308	154	1239	2522;2523;2524;2525	5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580	5573	184	20	9606
HGEEVTPEDVLSAAMYPDVFAHFK	1	0	Unmodified	2688.253	0.25300316	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			23.493	23.493	3;4	2.1694E-09	16665	DP1063-2	156.74	156.74			1.11	0.92867	12.765	3	0	Median	75654000	33764000	41890000	1309	154	1239	2526;2527;2528	5581;5582;5583;5584;5585;5586;5587;5588;5589	5583		9	9606
HGEIDYEAIVK	1	0	Unmodified	1272.635	0.63501672	381	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	4	0				1		17.527	17.527	2	0.0042225	9872	DP1063-4	101.66	51.631			NaN	NaN	NaN	0	0	Median	3187300	0	3187300	1310	381	1240	2529	5590	5590		1	9606
HGESAWNLENR	0	1	Unmodified	1311.5956	0.59561152	185	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	0	5	0					1	15.965	15.965	3	0.027732	8263	DP1063-5	46.796	37.364			2.76	2.0613	NaN	1	0	Median	9031900	2959400	6072500	1311	185	1241	2530	5591	5591		1	9606
HGGGGGGFGGGGFGSR	0	1	Unmodified	1319.5755	0.57554478	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.5	1.38	2	1	2		1	15.023	15.023	2;3	0.0010553	6793	DP1063-3	117.09	87.93		+	NaN	NaN	NaN	0	0	Median	73355000	73355000	0	1312	22	1242	2531;2532;2533;2534;2535;2536	5592;5593;5594;5595;5596;5597;5598;5599	5598		8	9606
HGINCFINR	0	1	Unmodified	1129.5451	0.54509627	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			16.038	16.038	2	0.00092484	8207	DP1063-3	127.12	90.671			NaN	NaN	NaN	0	0	Median	27555000	0	27555000	1313	419	1243	2537	5600;5601	5600		2	9606
HGNALWLNER	0	1	Unmodified	1208.6051	0.60505399	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.8	0.748		2	2	1		16.887	16.887	2;3	1.6717E-06	9300	DP1063-3	181.41	141.34			1.3765	1.4028	19.817	5	0	Linear	344490000	145530000	198950000	1314	110	1244	2538;2539;2540;2541;2542	5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614;5615;5616;5617	5608		16	9606
HGSGSGHSSSYGQHGSGSGWSSSSGR	0	1	Unmodified	2476.0137	0.013652602	31	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	3	0			1			12.631	12.631	4	5.5966E-08	3890	DP1063-3	139.28	122.46		+	NaN	NaN	NaN	0	0	Median	5689100	5689100	0	1315	31	1245	2543	5618;5619	5618		2	9606
HGSLGFLPR	0	1	Unmodified	982.53485	0.53484916	266	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		17.156	17.156	2	0.002476	9364	DP1063-4	117.4	69.656			1.9155	1.2748	NaN	1	0	Median	16916000	6318300	10598000	1316	266	1246	2544	5620;5621	5621		2	9606
HGVESTLER	0	1	Unmodified	1026.5094	0.50942227	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	0	1					13.577	13.577	2	6.9646E-06	2948	DP1063-1	145.16	111.23			3.2306	2.5864	NaN	1	0	Median	5067100	907470	4159700	1317	442	1247	2545	5622;5623	5623		2	9606
HGVIVAADSR	0	1	Unmodified	1023.5461	0.54614213	225	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	5	0					1	13.422	13.422	2	0.005752	5216	DP1063-5	93.429	61.074			2.0525	1.5329	NaN	1	0	Median	8398500	2768800	5629700	1318	225	1248	2546	5624;5625;5626;5627	5625		4	9606
HGVQELEIELQSQLSK	1	0	Unmodified	1836.9581	0.95814177	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0.707		1	2	1		20.82	20.82	2;3	2.7377000000000002E-73	14701	DP1063-3	305.75	261.14		+	NaN	NaN	NaN	0	0	Median	87944000	87944000	0	1319	251	1249	2547;2548;2549;2550	5628;5629;5630;5631;5632	5629		5	9606
HGYIGEFEIIDDHR	0	1	Unmodified	1699.7954	0.79543354	369	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	18.626	18.626	3	0.00033105	11578	DP1063-5	127.79	105.47			2.4276	1.813	NaN	1	0	Median	30285000	7866200	22419000	1320	369	1250	2551	5633;5634	5634		2	9606
HHIETGGGQLPAK	1	0	Unmodified	1343.6946	0.69459728	567	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					13.102	13.102	3	0.014922	2423	DP1063-1	78.903	42.375			NaN	NaN	NaN	0	0	Median	0	0	0	1321	567	1251	2552	5635	5635		1	9606
HHYEQQQEDLAR	0	1	Unmodified	1552.7019	0.7018675	493	Q14839;Q8TDI0;Q12873	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	yes	no	0	0	0	1.5	0.5	1	1				13.104	13.104	3	0.012313	2445	DP1063-1	55.261	38.127			2.6784	2.3878	NaN	1	0	Median	1327400	350280	977090	1322	493	1252	2553;2554	5636;5637	5636		2	9606
HIADLAGNSEVILPVPAFNVINGGSHAGNK	1	0	Unmodified	3010.5625	0.56246748	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		21.356	21.356	4	1.9303E-14	14963	DP1063-4	100.12	100.12			1.3168	0.91145	NaN	1	0	Median	11374000	3769000	7604600	1323	123	1253	2555	5638;5639;5640	5639		3	9606
HIEIQVLGDK	1	0	Unmodified	1150.6346	0.63462279	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		17.281	17.281	2	8.2823E-10	9924	DP1063-3	180.07	124.39			1.4106	1.1984	10.358	3	0	Plateau	510750000	203610000	307130000	1324	110	1254	2556;2557;2558	5641;5642;5643;5644;5645;5646;5647;5648;5649;5650;5651;5652	5648		12	9606
HIEVQILGDQYGNILHLYER	0	1	Unmodified	2409.2441	0.24409346	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		21.758	21.758	3;4	1.0732E-13	14518	DP1063-2	193.06	173.75			1.4217	1.0714	12.939	4	0	Median	120210000	48441000	71765000	1325	154	1255	2559;2560;2561;2562	5653;5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665	5656		13	9606
HIGLVYSGMGPDYR	0	1	Oxidation (M)	1579.7453	0.74531222	209	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	1	0	5	0					1	17.253	17.253	3	0.027538	9836	DP1063-5	43.594	19.243			1.1976	0.89445	NaN	1	0	Median	7115000	2935100	4179900	1326	209	1256	2563	5666	5666	264	1	9606
HIMGQNVADYMR	0	1	2 Oxidation (M)	1465.6442	0.64421797	288	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	0	4	0				1		14.52	14.52	3	0.026926	5928	DP1063-4	43.897	24.502			2.5079	1.6729	NaN	1	0	Median	5375500	1577900	3797600	1327	288	1257	2564	5667	5667	343;344	1	9606
HITIFSPEGR	0	1	Unmodified	1155.6037	0.60365701	352	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	5	0					1	17.086	17.086	2	0.0014591	9564	DP1063-5	110.41	79.334			1.8117	1.353	NaN	1	0	Median	13482000	2863100	10618000	1328	352	1258	2565	5668;5669;5670;5671	5668		4	9606
HIYYITGETK	1	0	Unmodified	1223.6186	0.61863837	132	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	2	0		1				15.854	15.854	2	6.5166E-06	6488	DP1063-2	143.37	108.11			2.0445	1.7105	NaN	1	0	Median	49255000	13977000	35278000	1329	132	1259	2566	5672;5673;5674;5675	5673		4	9606
HKLDVTSVEDYK	2	0	Unmodified	1432.7198	0.71980898	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	3	0			2			15.949	15.949	2;3	0.00025979	8085	DP1063-3	145.09	91.334			3.4394	3.0859	NaN	1	0	Median	29925000	6228100	23697000	1330	301	1260	2567;2568	5676;5677;5678;5679	5678		4	9606
HKSETDTSLIR	1	1	Unmodified	1285.6626	0.66262845	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	1	3	0			1			13.295	13.295	3	0.034527	4620	DP1063-3	54.7	24.893			4.6915	4.2552	NaN	1	0	Median	17616000	2936300	14679000	1331	268	1261	2569	5680;5681	5680		2	9606
HLCGDTNYAWPTAEIAVMGAK	1	0	Oxidation (M)	2320.0616	0.061637339	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			2			19.646	19.646	2;3	4.759699999999999E-46	13163	DP1063-3	241.39	220.14			1.4082	1.1308	1.9797	2	0	Median	102210000	40897000	61316000	1332	111	1262	2570;2571	5682;5683;5684;5685;5686;5687;5688;5689	5688	99	8	9606
HLCGDTNYAWPTAEIAVMGAK	1	0	Unmodified	2304.0667	0.066722717	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.894	20.894	3	8.3061E-06	14894	DP1063-3	94.632	79.317			1.1816	0.94885	NaN	1	0	Median	34061000	15237000	18823000	1333	111	1262	2572	5690;5691	5690		2	9606
HLEINPDHPIVETLR	0	1	Unmodified	1781.9424	0.94243213	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				17.847	17.847	3	0.00047625	9201	DP1063-2	139.58	139.58			2.3448	1.9308	NaN	1	0	Median	107680000	36579000	71097000	1334	135	1263	2573	5692;5693	5693		2	9606
HLEINPDHSIIETLR	0	1	Unmodified	1785.9373	0.93734675	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		3				18.63	18.63	2;3	4.066799999999999E-21	10229	DP1063-2	209.79	209.79			2.312	1.8692	NaN	1	0	Median	98362000	28267000	70094000	1335	132	1264	2574;2575;2576	5694;5695;5696;5697;5698;5699	5694		6	9606
HLEPALAFQLELNR	0	1	Unmodified	1649.8889	0.88893999	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1.5	0.5	2	2				20.729	20.729	2;3	4.2991E-05	13077	DP1063-2	126.09	126.09			1.1898	0.92665	14.823	4	0	Median	72908000	31695000	41213000	1336	43;460	1265	2577;2578;2579;2580	5700;5701;5702;5703;5704;5705;5706;5707;5708;5709	5704		10	9606
HLEVQILADQYGNAISLFGR	0	1	Unmodified	2243.1699	0.16986588	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				23.35	23.35	2;3	0.0092591	16453	DP1063-2	93.228	52.651			1.2368	1.0289	NaN	1	0	Median	3090900	1424300	1666700	1337	460	1266	2581;2582	5710;5711	5711		2	9606
HLIPAANTGESK	1	0	Unmodified	1236.6463	0.64625011	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				2		14.15	14.15	2;3	0.0006307	5515	DP1063-4	125.75	105.98			3.1356	2.1704	NaN	1	0	Median	6560400	930240	5630100	1338	371	1267	2583;2584	5712;5713;5714	5713		3	9606
HLLIGVSSDR	0	1	Unmodified	1095.6037	0.60365701	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		16.278	16.278	2	0.00051086	8281	DP1063-4	120.87	101.08			1.7671	1.224	NaN	1	0	Median	23139000	7969900	15169000	1339	258	1268	2585	5715;5716;5717;5718	5716		4	9606
HLLPVETQR	0	1	Unmodified	1091.6087	0.60874239	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					15.647	15.647	2	0.01717	5280	DP1063-1	82.452	45.692			2.2968	1.9055	NaN	1	0	Median	3197500	1238000	1959500	1340	487	1269	2586	5719	5719		1	9606
HLNEIDLFHCIDPNDSK	1	0	Unmodified	2065.9527	0.95273882	504	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	5	0					1	19.729	19.729	3	0.00041892	12991	DP1063-5	78.501	61.838			2.47	2.0909	NaN	1	0	Median	12118000	3438600	8679700	1341	504	1270	2587	5720;5721	5721		2	9606
HLQLAIR	0	1	Unmodified	849.51847	0.51847082	145;174;144	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;P16104;Q96QV6;Q71UI9;P0C0S5	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFX;HIST1H2AA;H2AFV;H2AFZ	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2AX;Histone H2A type 1-A;Histone H2A.V;Histone H2A.Z	no	no	0	0	0	5	0					1	15.754	15.754	2	0.0080292	7968	DP1063-5	126.68	45.677			1.6869	1.2599	NaN	1	0	Median	665320000	251000000	414330000	1342	145;174;144	1271	2588	5722;5723;5724	5723		3	9606
HLQLAIRNDEELNK	1	1	Unmodified	1691.8955	0.89548193	145;174	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;P16104;Q96QV6	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFX;HIST1H2AA	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2AX;Histone H2A type 1-A	no	no	0	0	1	5	0					1	16.096	16.096	3	0.00099516	8428	DP1063-5	126.12	103.77			1.4763	1.2586	NaN	1	0	Median	43101000	13146000	29956000	1343	145;174	1272	2589	5725;5726;5727;5728	5727		4	9606
HLQTGENHTSVDPR	0	1	Unmodified	1589.7546	0.75463136	80	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				13.013	13.013	3	0.045163	2916	DP1063-2	39.424	19.415			1.6741	1.3099	NaN	1	0	Median	4638200	1937800	2700400	1344	80	1273	2590	5729	5729		1	9606
HLSVNDLPVGR	0	1	Unmodified	1205.6517	0.65166983	230	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	5	0					1	17.037	17.037	2	8.2894E-05	9494	DP1063-5	133.75	64.125			NaN	NaN	NaN	0	0	Median	6672900	0	6672900	1345	230	1274	2591	5730;5731	5730		2	9606
HLTGEFEK	1	0	Unmodified	959.47125	0.47124585	387	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	13.936	13.936	2	0.00021354	5787	DP1063-5	140.09	81.922			2.8111	2.3796	NaN	1	0	Median	20734000	4764300	15970000	1346	387	1275	2592	5732;5733;5734;5735	5732		4	9606
HLTNDTTTPESTMTSGQAR	0	1	Oxidation (M)	2062.9226	0.9225609	635	Q9NWD8	TMEM248	Transmembrane protein 248	yes	yes	0	1	0	5	0					1	17.66	17.66	2	0.0256	10313	DP1063-5	56.951	35.394			3.2767	2.4472	NaN	1	0	Median	162540000	23884000	138660000	1347	635	1276	2593	5736	5736	759	1	9606
HLVDEPQNLIK	1	0	Unmodified	1304.7089	0.70885036	14	CON__P02769			yes	yes	0	0	0	2.81	0.527	1	1	14			21.714	21.714	1;2	9.9336E-17	9575	DP1063-3	225.87	174.8		+	NaN	NaN	NaN	0	0	Median	2947499999.9999995	2947499999.9999995	0	1348	14	1277	2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609	5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759;5760	5741		24	9606
HLVDEPQNLIKQNCDQFEK	2	0	Unmodified	2354.1325	0.1324941	14	CON__P02769			yes	yes	0	0	1	3	0			1			17.814	17.814	3	0.00043205	10621	DP1063-3	147.37	96.761		+	NaN	NaN	NaN	0	0	Median	11962000	11962000	0	1349	14	1278	2610	5761;5762	5761		2	9606
HMEMYADR	0	1	Oxidation (M)	1067.4164	0.41644987	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					13.19	13.19	2	0.0036943	2369	DP1063-1	118.74	103.11			1.4162	1.1719	NaN	1	0	Median	3301000	1453900	1847100	1350	460	1279	2611	5763;5764	5763	571;572	2	9606
HMEMYADR	0	1	Unmodified	1051.4215	0.42153524	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.368	14.368	2	0.0004065	3860	DP1063-1	134.81	112.32			1.3808	1.089	NaN	1	0	Median	11166000	4526100	6639500	1351	460	1279	2612	5765;5766;5767	5767		3	9606
HMEMYADRESR	0	2	Oxidation (M)	1439.5922	0.5921824	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					12.831	12.831	3	0.012068	2031	DP1063-1	54.486	53.496			1.2993	1.1943	NaN	1	0	Median	5341600	2134500	3207200	1352	460	1280	2613	5768	5768	571;572	1	9606
HMFHVAWVDPEDPYK	1	0	Oxidation (M)	1885.8458	0.84575455	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				18.695	18.695	3	0.00023711	10362	DP1063-2	102.33	102.33			1.2235	1.0556	0.65098	2	0	Median	100850000	46571000	54276000	1353	460	1281	2614;2615	5769;5770;5771;5772;5773;5774;5775;5776	5775	573	8	9606
HMFHVAWVDPEDPYK	1	0	Unmodified	1869.8508	0.85083993	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.501	19.501	3	0.001258	9716	DP1063-1	75.589	59.771			1.2442	0.9724	NaN	1	0	Median	7455400	2809200	4646200	1354	460	1281	2616	5777;5778	5777		2	9606
HMFHVAWVDPEDPYKGYR	1	1	Oxidation (M)	2262.0317	0.03165784	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.33	0.471	2	1				18.396	18.396	3;4	1.7191E-11	8420	DP1063-1	180.11	180.11			0.96603	0.91003	23.921	3	0	Plateau	86266000	43077000	43188000	1355	460	1282	2617;2618;2619	5779;5780;5781;5782;5783;5784	5781	573	6	9606
HMYHSLYLK	1	0	Oxidation (M)	1206.5856	0.5855641	424	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	1	0	5	0					1	14.407	14.407	3	0.036122	6417	DP1063-5	42.864	42.864			1.9798	1.6759	NaN	1	0	Median	11440000	4115400	7325100	1356	424	1283	2620	5785	5785	536	1	9606
HNDDEQYAWESSAGGSFTVR	0	1	Unmodified	2254.9516	0.95155284	135;132	P08238;P07900;Q14568	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	no	no	0	0	0	2	0		2				19.094	19.094	2;3	2.5287E-227	10867	DP1063-2	386.37	368.68			2.576	2.0015	9.0952	2	0	Median	105910000	28400000	77510000	1357	135;132	1284	2621;2622	5786;5787;5788;5789;5790;5791;5792;5793;5794	5793		9	9606
HNFCFMEMNTR	0	1	2 Oxidation (M)	1517.585	0.58498853	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2.5	0.5		2	2			15.577	15.577	2;3	0.0010611	6099	DP1063-2	92.538	85.879			1.5078	1.1524	8.3262	4	0	Median	176630000	63167000	113460000	1358	595	1285	2623;2624;2625;2626	5795;5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807	5797	712;713	13	9606
HNFCFMEMNTR	0	1	Oxidation (M)	1501.5901	0.59007391	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		2				17.089	17.089	2;3	0.0031513	8011	DP1063-2	93.556	93.556			1.5452	1.1244	5.4694	2	0	Median	45960000	18378000	27581000	1359	595	1285	2627;2628	5808;5809;5810;5811;5812;5813;5814;5815	5814	712;713	8	9606
HNLEIIK	1	0	Unmodified	865.50215	0.50215205	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.109	15.109	2	0.0025031	4689	DP1063-1	127.12	37.975			NaN	NaN	NaN	0	0	Median	4374000	0	4374000	1360	420	1286	2629	5816;5817	5816		2	9606
HPENYDLATLK	1	0	Unmodified	1299.6459	0.64591575	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		2				16.48	16.48	2	2.7642E-06	7328	DP1063-2	166.66	90.488			NaN	NaN	NaN	0	0	Median	25045000	25045000	0	1361	418	1287	2630;2631	5818;5819	5818		2	9606
HPEYAVSVLLR	0	1	Unmodified	1282.7034	0.70337105	14	CON__P02769			yes	yes	0	0	0	2.75	1.09	1		2	1		18.732	18.732	2;3	3.5969E-08	11901	DP1063-3	149.33	124.26		+	NaN	NaN	NaN	0	0	Median	160800000	160800000	0	1362	14	1288	2632;2633;2634;2635	5820;5821;5822;5823;5824;5825	5824		6	9606
HPGSFDVVHVK	1	0	Unmodified	1220.6302	0.63020611	383	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	4	0				1		15.202	15.202	3	0.031437	6861	DP1063-4	55.721	15.873			NaN	NaN	NaN	0	0	Median	0	0	0	1363	383	1289	2636	5826	5826		1	9606
HPHDIIDDINSGAVECPAS	0	0	Unmodified	2045.9113	0.91126793	231	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	18.99	18.99	3	0.00027872	12065	DP1063-5	115.26	98.644			NaN	NaN	NaN	0	0	Median	0	0	0	1364	231	1290	2637	5827;5828	5828		2	9606
HPQPGAVELAAK	1	0	Unmodified	1216.6564	0.65642086	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					14.609	14.609	2	3.0739E-06	4109	DP1063-1	170.89	113.97			NaN	NaN	NaN	0	0	Median	3932900	0	3932900	1365	222	1291	2638	5829;5830	5830		2	9606
HPSKPDPSGECNPDLR	1	1	Unmodified	1804.8162	0.81624534	453	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	1	3	0			1			13.5	13.5	3	0.00098831	4956	DP1063-3	80.632	62.617			2.2698	2.0587	NaN	1	0	Median	3293100	1000300	2292800	1366	453	1292	2639	5831;5832	5832		2	9606
HPYFYAPELLYYANK	1	0	Unmodified	1887.9196	0.91957142	14	CON__P02769			yes	yes	0	0	0	2.83	0.591	2	2	24	1		25.007	25.007	2;3	4.237899999999999E-46	15588	DP1063-3	311.02	234.17		+	NaN	NaN	NaN	0	0	Median	441530000	441530000	0	1367	14	1293	2640;2641;2642;2643;2644;2645;2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668	5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865;5866	5840		34	9606
HQEGEIFDTEKEKYEITEQR	2	1	Unmodified	2508.1769	0.17686133	439	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	2	4	0				1		16.836	16.836	4	5.022E-05	8910	DP1063-4	100.27	100.27			1.2634	1.3062	NaN	1	0	Median	17040000	6071300	10969000	1368	439	1294	2669	5867;5868	5867		2	9606
HQGVMVGMGQK	1	0	Oxidation (M)	1186.5587	0.55869743	349;409;411;528	P60709;P63261;P68133;P68032;P63267;P62736;Q562R1	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	1	0	4	0				1		13.442	13.442	2	0.0054539	4615	DP1063-4	106.6	72.393			NaN	NaN	NaN	0	0	Median	5130900	0	5130900	1369	349;409;411;528	1295	2670	5869	5869	440	1	9606
HQNVQLPR	0	1	Unmodified	990.53591	0.5359118	215	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	3	0			1			13.938	13.938	2	0.037449	5431	DP1063-3	85.359	37.186			NaN	NaN	NaN	0	0	Median	2878700	2878700	0	1370	215	1296	2671	5870	5870		1	9606
HRPSEADEEELAR	0	2	Unmodified	1537.7121	0.71209784	44	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	1	2	0		1				13.66	13.66	3	0.0012683	3730	DP1063-2	104.9	71.701			NaN	NaN	NaN	0	0	Median	2563000	0	2563000	1371	44	1297	2672	5871;5872	5872		2	9606
HSDLVTKEASFEYLQNEGER	1	1	Unmodified	2351.103	0.10296811	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.951	17.951	3	0.00049934	7801	DP1063-1	113.23	83.223			NaN	NaN	NaN	0	0	Median	2072200	0	2072200	1372	460	1298	2673	5873;5874;5875;5876	5874		4	9606
HSEAATAQREEWK	1	1	Unmodified	1541.7223	0.7222686	482	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	1	4	0				1		13.191	13.191	3	0.0078878	4355	DP1063-4	76.24	55.383			2.6256	2.5527	NaN	1	0	Median	5228300	1455300	3773100	1373	482	1299	2674	5877;5878	5878		2	9606
HSEAFEALQQK	1	0	Unmodified	1286.6255	0.62551466	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			15.611	15.611	2	1.0396E-13	7623	DP1063-3	197.27	152.92			1.4911	1.1973	NaN	1	0	Median	24717000	10472000	14245000	1374	449	1300	2675	5879;5880	5879		2	9606
HSGNITFDEIVNIAR	0	1	Unmodified	1684.8533	0.85328277	231	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					3	20.801	20.801	2;3	5.1687E-05	14377	DP1063-5	159.41	121.04			1.4287	1.067	NaN	1	0	Median	8055800	3751400	4304400	1375	231	1301	2676;2677;2678	5881;5882;5883;5884;5885	5882		5	9606
HSGPNSADSANDGFVR	0	1	Unmodified	1629.7132	0.71316047	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				2		14.43	14.43	2;3	0.00032497	5859	DP1063-4	142.57	114.52			1.7934	1.1864	NaN	1	0	Median	19158000	6066600	13091000	1376	327	1302	2679;2680	5886;5887;5888;5889;5890;5891;5892	5890		7	9606
HSQDLAFLSMLNDIAAVPATAMPFR	0	1	2 Oxidation (M)	2747.3411	0.34110666	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	2	0	2	0		1				23.253	23.253	3	0.0028078	16338	DP1063-2	72.122	36.792			NaN	NaN	NaN	0	0	Median	4735400	0	4735400	1377	303	1303	2681	5893	5893	358;359	1	9606
HSQFIGYPITLFVEK	1	0	Unmodified	1777.9403	0.94030686	132	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	2	0		1				22.036	22.036	3	0.00050413	14747	DP1063-2	90.259	90.259			2.4266	2.0301	NaN	1	0	Median	11021000	3895600	7125200	1378	132	1304	2682	5894;5895	5894		2	9606
HSQFLGYPITLYLEK	1	0	Unmodified	1807.9509	0.95087155	529	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	0	2	0		1				21.657	21.657	2	5.3765E-07	14285	DP1063-2	191.01	0			NaN	NaN	NaN	0	0	Median	12356000	0	12356000	1379	529	1305	2683	5896;5897	5896		2	9606
HSQYHVDGSLEKDR	1	1	Unmodified	1669.7808	0.78084611	583	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	1	4	0				1		13.508	13.508	4	0.049361	4731	DP1063-4	43.791	19.094			NaN	NaN	NaN	0	0	Median	2025500	0	2025500	1380	583	1306	2684	5898	5898		1	9606
HSSLITPLQAVAQR	0	1	Unmodified	1519.8471	0.84707518	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.525	18.525	3	0.034032	8615	DP1063-1	64.313	34.763			NaN	NaN	NaN	0	0	Median	3415700	0	3415700	1381	420	1307	2685	5899	5899		1	9606
HSVGVVIGR	0	1	Unmodified	922.53485	0.53484916	570	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2	0		1				14.594	14.594	2	0.055119	4937	DP1063-2	64.567	48.935			3.5895	2.6099	NaN	1	0	Median	13558000	2881300	10677000	1382	570	1308	2686	5900	5900		1	9606
HTFSGVASVESSSGEAFHVGK	1	0	Unmodified	2118.997	0.99704647	18	CON__P12763			yes	yes	0	0	0	3	0			3			17.495	17.495	2;3;4	2.9917E-81	10187	DP1063-3	334.79	286.22		+	NaN	NaN	NaN	0	0	Median	193920000	193920000	0	1383	18	1309	2687;2688;2689	5901;5902;5903;5904;5905	5903		5	9606
HTGPGILSMANAGPNTNGSQFFICTAK	1	0	Oxidation (M)	2806.3167	0.31668283	401	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	1	0	5	0					1	19.534	19.534	3	5.0467E-08	12739	DP1063-5	141	107.98			NaN	NaN	NaN	0	0	Median	12217000	0	12217000	1384	401	1310	2690	5906;5907	5907	493	2	9606
HTGPNSPDTANDGFVR	0	1	Unmodified	1683.7601	0.76011066	237	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3.33	0.471			2	1		15.027	15.027	2;3	1.3277E-21	6841	DP1063-3	252.96	225.19			1.3786	1.0692	14.555	3	0	Median	80608000	32475000	48133000	1385	237	1311	2691;2692;2693	5908;5909;5910;5911;5912;5913;5914;5915;5916;5917;5918;5919	5915		12	9606
HTLNQIDSVK	1	0	Unmodified	1153.6091	0.60913632	18	CON__P12763			yes	yes	0	0	0	4	0.816			1	1	1	14.403	14.403	2	8.0674E-05	5766	DP1063-4	188.91	127.32		+	NaN	NaN	NaN	0	0	Median	170730000	170730000	0	1386	18	1312	2694;2695;2696	5920;5921;5922;5923;5924	5922		5	9606
HTNYTMEHIR	0	1	Oxidation (M)	1316.5932	0.59316868	60;253	O43707;P12814;P35609	ACTN4;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2	no	no	0	1	0	2	0		1				12.816	12.816	3	0.00046044	2713	DP1063-2	97.813	72.96			2.7287	2.0159	NaN	1	0	Median	9058100	2447900	6610200	1387	60;253	1313	2697	5925;5926	5925	53	2	9606
HTPLVEFEEEESDKR	1	1	Unmodified	1843.8588	0.85882166	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.17	1.07		2	2	1	1	17.015	17.015	2;3	1.2883E-82	9538	DP1063-3	296.97	277.68			1.2766	1.1579	14.064	5	0	Median	355990000	152540000	203450000	1388	595	1314	2698;2699;2700;2701;2702;2703	5927;5928;5929;5930;5931;5932;5933;5934;5935;5936;5937;5938;5939;5940;5941;5942;5943;5944;5945;5946;5947;5948	5939		22	9606
HTPLVEFEEEESDKRESE	1	1	Unmodified	2188.976	0.97603626	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	3	1.07		3	2	1	1	17.344	17.344	2;3	9.4563E-72	9862	DP1063-3	279.77	258.93			1.3384	1.2166	9.0057	7	0	Median	1051499999.9999999	441800000	609690000	1389	595	1315	2704;2705;2706;2707;2708;2709;2710	5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968;5969;5970;5971;5972;5973;5974;5975;5976;5977;5978	5966		30	9606
HVEVQVFGDHHGNAVYLFER	0	1	Unmodified	2352.14	0.13996274	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.88	0.781		3	3	2		18.879	18.879	2;3;4	8.561E-74	10596	DP1063-2	284.24	284.24			1.5416	1.2975	11.42	8	0	Median	1484599999.9999998	573860000	910730000	1390	595	1316	2711;2712;2713;2714;2715;2716;2717;2718	5979;5980;5981;5982;5983;5984;5985;5986;5987;5988;5989;5990;5991;5992;5993;5994;5995;5996;5997;5998;5999;6000;6001;6002;6003;6004;6005;6006;6007;6008;6009;6010;6011;6012;6013	5990		35	9606
HVFGESDELIGQK	1	0	Unmodified	1457.7151	0.71505795	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					2	17.231	17.231	2;3	1.9813E-05	9740	DP1063-5	169.58	105.54			2.1624	1.8304	NaN	1	0	Median	30166000	6132800	24033000	1391	347	1317	2719;2720	6014;6015;6016;6017	6017		4	9606
HVFGQAVK	1	0	Unmodified	884.48684	0.48683634	652	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	3	0			1			13.569	13.569	2	0.035156	4954	DP1063-3	81.297	55.188			3.1977	2.5677	NaN	1	0	Median	4966600	1128900	3837700	1392	652	1318	2721	6018	6018		1	9606
HVMQPYYK	1	0	Oxidation (M)	1080.5063	0.50625115	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					13.553	13.553	2	0.009812	2917	DP1063-1	97.602	76.903			2.1878	1.9188	NaN	1	0	Median	1562700	503360	1059300	1393	420	1319	2722	6019;6020	6020	526	2	9606
HVQLLGR	0	1	Unmodified	821.48717	0.48717069	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				14.862	14.862	2	0.026953	5245	DP1063-2	111.69	42.298			1.1994	0.88752	NaN	1	0	Median	28344000	13386000	14958000	1394	543;581	1320	2723	6021	6021		1	9606
HWGGNVLGPK	1	0	Unmodified	1063.5563	0.55631289	382	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		15.907	15.907	2	0.017848	7859	DP1063-4	75.738	75.738			1.7508	1.2118	NaN	1	0	Median	14004000	6094200	7909800	1395	382	1321	2724	6022	6022		1	9606
HWHEACFHCSQCR	0	1	Unmodified	1813.6984	0.69839558	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		13.686	13.686	4	0.0023956	4933	DP1063-4	89.189	86.244			1.2231	0.78995	NaN	1	0	Median	13373000	5752400	7620300	1396	485	1322	2725	6023;6024	6024		2	9606
HWHHNCFSCAR	0	1	Unmodified	1510.6095	0.60950422	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		13.257	13.257	3	0.0094631	4458	DP1063-4	59.542	39.115			0.99492	0.70136	NaN	1	0	Median	4020800	2018200	2002600	1397	477	1323	2726	6025;6026;6027	6027		3	9606
HWILPQDYDHAQAEAR	0	1	Unmodified	1948.918	0.91800829	506	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	4	0				1		17.554	17.554	3	0.0002188	9919	DP1063-4	84.62	67.74			1.469	1.0137	NaN	1	0	Median	4496700	1973000	2523800	1398	506	1324	2727	6028	6028		1	9606
HWPFQVINDGDKPK	2	0	Unmodified	1679.842	0.8419898	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			18.104	18.104	3	0.0022965	10908	DP1063-3	90.689	90.689			2.6969	2.4198	NaN	1	0	Median	113810000	32609000	81202000	1399	149	1325	2728	6029;6030;6031;6032	6032		4	9606
HYFIEVNSR	0	1	Unmodified	1163.5724	0.57235688	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.648	16.648	2	7.6976E-08	7517	DP1063-2	154.12	105.36			1.4801	1.4212	15.733	3	0	Plateau	775360000	324910000	450450000	1400	154	1326	2729;2730;2731	6033;6034;6035;6036;6037;6038;6039;6040;6041	6034		9	9606
HYFQNTQGLIFVVDSNDRER	0	2	Unmodified	2437.1775	0.17747045	181	P18085;P84085;P84077;P61204	ARF4;ARF5;ARF1;ARF3	ADP-ribosylation factor 4;ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3	yes	no	0	0	1	5	0					1	19.384	19.384	3	0.00095772	12600	DP1063-5	108.77	83.271			NaN	NaN	NaN	0	0	Median	10691000	0	10691000	1401	181	1327	2732	6042;6043	6042		2	9606
HYNGEAYEDDEHHPR	0	1	Unmodified	1867.751	0.75100254	236	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				1		12.877	12.877	4	0.00082618	4087	DP1063-4	98.592	93.05			2.4201	1.5778	NaN	1	0	Median	6062500	2378800	3683600	1402	236	1328	2733	6044;6045;6046;6047	6046		4	9606
IAAAILNTPDLR	0	1	Unmodified	1266.7296	0.7295858	94	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	4	0				1		19.544	19.544	2	0.00049518	12605	DP1063-4	134.68	56.999			2.457	1.6184	NaN	1	0	Median	5745100	1652100	4092900	1403	94	1329	2734	6048;6049	6048		2	9606
IAAGEKIPLSQEEITLQGHAFEAR	1	1	Unmodified	2607.3657	0.36566515	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0.816		2	2	2		19.115	19.115	3;4	4.0981E-80	10880	DP1063-2	285.13	285.13			1.3487	1.2613	21.094	6	0	Median	689910000	286340000	403580000	1404	595	1330	2735;2736;2737;2738;2739;2740	6050;6051;6052;6053;6054;6055;6056;6057;6058;6059;6060;6061;6062;6063;6064;6065;6066;6067;6068;6069	6050		20	9606
IADGYEQAAR	0	1	Unmodified	1092.52	0.51998696	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			14.758	14.758	2	0.0056705	6464	DP1063-3	93.598	44.842			4.0078	3.0979	NaN	1	0	Median	48536000	9683400	38852000	1405	301	1331	2741	6070;6071	6071		2	9606
IAEEFEVELER	0	1	Unmodified	1362.6667	0.66671078	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		19.978	19.978	2	1.2501E-37	12105	DP1063-2	244.8	191.3			1.3437	1.184	18.228	3	0	Plateau	312730000	125100000	187630000	1406	154	1332	2742;2743;2744	6072;6073;6074;6075;6076;6077;6078;6079;6080;6081	6075		10	9606
IAEFTTNLTEEEEKSK	2	0	Unmodified	1867.9051	0.90510315	252	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	0	2					17.533	17.533	2;3	0.00075531	7330	DP1063-1	144.68	144.68			2.1551	2.1659	NaN	1	0	Median	9523000	2522600	7000400	1407	252	1333	2745;2746	6082;6083;6084;6085;6086	6084		5	9606
IAFAITAIK	1	0	Unmodified	946.58515	0.5851534	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	20.114	20.114	2	0.015363	13484	DP1063-5	85.161	31.809			2.0878	1.7673	NaN	1	0	Median	36846000	11457000	25389000	1408	374	1334	2747	6087;6088;6089	6088		3	9606
IAGYVTHLMK	1	0	Oxidation (M)	1147.606	0.6059652	137	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	5	0					1	15.336	15.336	2	0.011699	7471	DP1063-5	72.23	72.23			2.8548	2.4166	NaN	1	0	Median	12697000	3106100	9590900	1409	137	1335	2748	6090;6091	6090	146	2	9606
IAILTCPFEPPKPK	2	0	Unmodified	1609.8902	0.89018555	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	3	0			1			19.295	19.295	3	0.0024393	12683	DP1063-3	89.747	89.747			2.2563	2.0244	NaN	1	0	Median	20645000	4729000	15916000	1410	301	1336	2749	6092;6093;6094;6095;6096	6095		5	9606
IAIPGLAGAGNSVLLVSNLNPER	0	1	Unmodified	2274.2696	0.26957993	215	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	3	0			2			23.533	23.533	2	1.0013E-07	18343	DP1063-3	146.3	146.3			1.9618	1.4926	NaN	1	0	Median	8041300	2920800	5120500	1411	215	1337	2750;2751	6097;6098;6099;6100;6101;6102	6101		6	9606
IALTDNALIAR	0	1	Unmodified	1169.6768	0.67682195	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		19.256	19.256	2	6.0446E-07	12197	DP1063-4	167.23	90.455			1.62	1.2176	NaN	1	0	Median	43853000	17294000	26559000	1412	182	1338	2752	6103;6104;6105;6106	6103		4	9606
IAMENDDGRTEEEKHSAVQR	1	2	Oxidation (M)	2330.0557	0.055700338	560	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	1	2	2	0		1				12.881	12.881	4	0.014073	2764	DP1063-2	68.243	48.839			NaN	NaN	NaN	0	0	Median	2329800	0	2329800	1413	560	1339	2753	6107	6107	688	1	9606
IANPVEGSSGR	0	1	Unmodified	1085.5465	0.54653606	507	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		14.787	14.787	2	0.014147	6258	DP1063-4	79.148	41.59			2.5741	1.6452	NaN	1	0	Median	6729800	1794000	4935800	1414	507	1340	2754	6108;6109	6109		2	9606
IANPVEGSTDR	0	1	Unmodified	1157.5677	0.56766543	508	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		15.168	15.168	2	0.004224	6772	DP1063-4	101.65	53.94			NaN	NaN	NaN	0	0	Median	3759900	3759900	0	1415	508	1341	2755	6110	6110		1	9606
IAPLEEGTLPFNLAEAQR	0	1	Unmodified	1968.0316	0.031641065	647	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	3	0			1			22.347	22.347	2	0.00036205	16734	DP1063-3	117.08	117.08			3.7732	2.7219	NaN	1	0	Median	14715000	3433800	11281000	1416	647	1342	2756	6111	6111		1	9606
IAPYVAHNFSK	1	0	Unmodified	1245.6506	0.6506072	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.957	1	2	2	1		15.799	15.799	2;3	4.9269E-06	6426	DP1063-2	125.71	125.71			1.3173	1.0908	6.024	5	0	Median	1333400000	562070000	771330000	1417	154	1343	2757;2758;2759;2760;2761;2762	6112;6113;6114;6115;6116;6117;6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133	6123		22	9606
IAQLEEELEEEQGNTELINDR	0	1	Unmodified	2471.1664	0.16635622	252	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					21.034	21.034	2	1.6423999999999999E-66	11590	DP1063-1	281.65	200.69			NaN	NaN	NaN	0	0	Median	4146200	0	4146200	1418	252	1344	2763	6134;6135	6134		2	9606
IAQLEEQLDNETK	1	0	Unmodified	1529.7573	0.7573167	252	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					17.926	17.926	2	3.4645E-05	7773	DP1063-1	164.64	106.37			2.3795	1.9395	NaN	1	0	Median	3197500	938940	2258600	1419	252	1345	2764	6136;6137	6136		2	9606
IAQLEEQLDNETKER	1	1	Unmodified	1814.901	0.90102082	252	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	0	1					17.332	17.332	3	0.00046618	7085	DP1063-1	121.76	32.53			NaN	NaN	NaN	0	0	Median	3226000	0	3226000	1420	252	1346	2765	6138;6139	6139		2	9606
IAQPGDHVSVTGIFLPILR	0	1	Unmodified	2032.1469	0.14694559	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		2				22.729	22.729	2;3	4.6758E-05	15720	DP1063-2	94.281	94.281			1.4862	1.0871	NaN	1	0	Median	24530000	10018000	14512000	1421	246	1347	2766;2767	6140;6141;6142	6140		3	9606
IAQSEAELISDEAQADLALR	0	1	Unmodified	2142.0804	0.080441751	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				22.183	22.183	2	4.5961E-49	14954	DP1063-2	264.31	217.33			NaN	NaN	NaN	0	0	Median	21798000	0	21798000	1422	654	1348	2768	6143;6144;6145	6143		3	9606
IASLEVENQSLR	0	1	Unmodified	1357.7201	0.72014333	228	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		17.74	17.74	2	3.3419E-13	10123	DP1063-4	195.83	44.388			2.5511	1.8162	NaN	1	0	Median	28693000	8918600	19775000	1423	228	1349	2769	6146;6147;6148;6149	6147		4	9606
IASSIVAQTAGIPTLPWSGSGLR	0	1	Unmodified	2281.243	0.24303082	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	4	2	2	2		22.914	22.914	2;3	4.3006E-96	13799	DP1063-1	395.76	395.76			1.1348	1.0606	17.024	8	0	Linear	333550000	151050000	182500000	1424	460	1350	2770;2771;2772;2773;2774;2775;2776;2777;2778;2779	6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183	6152		34	9606
IAVAAQNCYK	1	0	Unmodified	1136.5648	0.56482866	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	14.961	14.961	2	0.00020644	7065	DP1063-5	126.67	126.67			2.5018	2.1178	NaN	1	0	Median	23172000	6094900	17077000	1425	347	1351	2780	6184;6185;6186;6187	6185		4	9606
IAVQTEKEESK	2	0	Unmodified	1260.6561	0.65614609	620	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	0	1	1	0	1					12.755	12.755	3	0.012861	2092	DP1063-1	81.017	27.265			NaN	NaN	NaN	0	0	Median	515800	0	515800	1426	620	1352	2781	6188	6188		1	9606
IAWDDEETR	0	1	Unmodified	1133.4989	0.49891717	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.222	17.222	2	1.3211E-12	9814	DP1063-3	186.09	150.73			1.4151	1.1345	NaN	1	0	Median	77885000	30774000	47111000	1427	110	1353	2782	6189;6190;6191;6192	6191		4	9606
IAWDDEETRDGFR	0	2	Unmodified	1608.7168	0.71684887	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.8	0.748		2	2	1		18.094	18.094	2;3	1.7404E-50	10944	DP1063-3	211.64	172.34			1.5012	1.3725	2.1386	5	0	Median	676930000	279570000	397360000	1428	110	1354	2783;2784;2785;2786;2787	6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209;6210;6211	6205		19	9606
IAWPPPTELGSSGSALEEGIK	1	0	Unmodified	2138.0895	0.089549874	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	2	0		1				21.583	21.583	2	0.0016687	14214	DP1063-2	106.52	68.571			NaN	NaN	NaN	0	0	Median	5640000	0	5640000	1429	644	1355	2788	6212	6212		1	9606
ICCDLDVLASK	1	0	Unmodified	1292.6105	0.61045823	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.019	19.019	2	0.00043976	12240	DP1063-3	123.86	123.86			1.3794	1.1077	NaN	1	0	Median	208320000	84077000	124240000	1430	111	1356	2789	6213;6214;6215;6216	6213		4	9606
ICCDLDVLASKK	2	0	Unmodified	1420.7054	0.70542124	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			17.432	17.432	3	0.0057258	10081	DP1063-3	60.157	49.808			1.732	1.554	NaN	1	0	Median	33388000	12205000	21183000	1431	111	1357	2790	6217	6217		1	9606
ICDDELILIK	1	0	Unmodified	1230.653	0.65297497	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			20.579	20.579	2	0.0017529	14479	DP1063-3	118.5	51.326			NaN	NaN	NaN	0	0	Median	21199000	0	21199000	1432	179	1358	2791	6218	6218		1	9606
ICGDIHGQYYDLLR	0	1	Unmodified	1721.8195	0.8195398	365;260	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.78	0.786			4	3	2	20.348	20.348	2;3	3.3245E-11	12621	DP1063-3	204.32	162.11			90.473	84.424	NaN	1	0	Median	872150000	3497900	868650000	1433	260;365	1359	2792;2793;2794;2795;2796;2797;2798;2799;2800	6219;6220;6221;6222;6223;6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234	6222		16	9606
IDCFSEVPTSVFGEK	1	0	Unmodified	1713.792	0.79198764	41	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			21.192	21.192	2	0.02955	15306	DP1063-3	81.431	52.474			NaN	NaN	NaN	0	0	Median	3774900	0	3774900	1434	41	1360	2801	6235	6235		1	9606
IDDIRKPGESEE	1	1	Unmodified	1386.6627	0.66268803	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	2	3	0			1			14.236	14.236	2	0.03965	5839	DP1063-3	118.23	84.027			NaN	NaN	NaN	0	0	Median	6497500	0	6497500	1435	301	1361	2802	6236	6236		1	9606
IDDVVNTR	0	1	Unmodified	930.47706	0.47705951	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			15.047	15.047	2	1.1288E-06	6898	DP1063-3	147.52	80.72			3.9217	3.0311	NaN	1	0	Median	48474000	12135000	36338000	1436	320	1362	2803	6237;6238;6239;6240	6239		4	9606
IDIIPNPQER	0	1	Unmodified	1193.6404	0.64043645	135	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2	0		1				18.633	18.633	2	0.00022874	10108	DP1063-2	126.24	86.938			1.8857	1.4844	NaN	1	0	Median	61352000	22073000	39279000	1437	135	1363	2804	6241;6242;6243	6242		3	9606
IDILDSALLRPGR	0	2	Unmodified	1437.8304	0.83036248	367	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	1	4	0				1		20.922	20.922	3	0.030444	14441	DP1063-4	55.98	40.059			0.85624	0.76776	NaN	1	0	Median	8208200	3117800	5090400	1438	367	1364	2805	6244	6244		1	9606
IDKPILK	2	0	Unmodified	825.53239	0.53238955	400	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		14.076	14.076	2	0.052745	5388	DP1063-4	85.359	16.875			1.2806	1.3299	NaN	1	0	Median	5441200	2508800	2932400	1439	400	1365	2806	6245	6245		1	9606
IDLTLLNR	0	1	Unmodified	956.56548	0.56548059	536	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					20.38	20.38	2	0.010468	10816	DP1063-1	111.65	53.481			2.1999	1.7987	NaN	1	0	Median	3821700	1225300	2596400	1440	536	1366	2807	6246	6246		1	9606
IDSHHDNQSAVAELDR	0	1	Unmodified	1805.8293	0.82925286	475	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	2	0		2				14.881	14.881	2;3	1.2018E-06	5223	DP1063-2	180.27	130.12			NaN	NaN	NaN	0	0	Median	13718000	0	13718000	1441	475	1367	2808;2809	6247;6248;6249	6248		3	9606
IDTGWLDR	0	1	Unmodified	974.48214	0.48214489	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	1.09	5	1	1	1		23.3	23.3	2	8.3255E-17	11198	DP1063-2	187.34	90.266			1.2657	1.0592	1.5315	3	0	Plateau	423830000	327080000	96745000	1442	460	1368	2810;2811;2812;2813;2814;2815;2816;2817	6250;6251;6252;6253;6254;6255;6256;6257;6258;6259;6260;6261;6262	6259		13	9606
IDTIEIITDR	0	1	Unmodified	1187.6398	0.63976774	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		20.089	20.089	2	2.3892E-06	13330	DP1063-4	148.52	103.19			1.9379	1.2152	NaN	1	0	Median	10612000	3117000	7494700	1443	197	1369	2818	6263;6264;6265;6266	6264		4	9606
IDVTAPDVSIEEPEGK	1	0	Unmodified	1697.836	0.83596095	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	2	0		1				19.172	19.172	2	0.0069715	10985	DP1063-2	90.861	43.302			NaN	NaN	NaN	0	0	Median	0	0	0	1444	455	1370	2819	6267	6267		1	9606
IEALGGFVSHMDCWR	0	1	Oxidation (M)	1792.8025	0.80250953	310	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	1	0	2	0		1				15.194	15.194	2	0.0017924	5621	DP1063-2	87.258	56.646			1.3332	0.96731	NaN	1	0	Median	15222000	6953000	8268500	1445	310	1371	2820	6268;6269;6270;6271;6272	6269	377	5	9606
IECDDKGDGSCDVR	1	1	Unmodified	1624.6457	0.64573411	190	P21333;Q14315	FLNA;FLNC	Filamin-A;Filamin-C	yes	no	0	0	1	1.33	0.471	2	1				13.209	13.209	2;3	0.00086735	2603	DP1063-1	104.81	104.81			13.61	12.69	NaN	1	0	Median	20850000	1000200	19850000	1446	190	1372	2821;2822;2823	6273;6274;6275;6276;6277;6278;6279	6275		7	9606
IEDFLER	0	1	Unmodified	920.46035	0.46034682	291	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	18.59	18.59	2	0.00736	11514	DP1063-5	127.12	64.403			2.1046	1.5718	NaN	1	0	Median	32785000	9488200	23297000	1447	291	1373	2824	6280;6281;6282	6282		3	9606
IEDLSQQAQLAAAEK	1	0	Unmodified	1613.8261	0.82606496	33	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	4	0				1		17.876	17.876	2	0.00045608	10286	DP1063-4	158.42	158.42			2.9375	2.0333	NaN	1	0	Median	9509400	2795800	6713600	1448	33	1374	2825	6283;6284;6285	6283		3	9606
IEDVTPIPSDSTR	0	1	Unmodified	1428.7096	0.70963822	372	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	17.338	17.338	2	0.00074987	9873	DP1063-5	147.62	125.63			1.5675	1.1707	NaN	1	0	Median	60153000	23804000	36348000	1449	372	1375	2826	6286;6287;6288;6289;6290;6291;6292	6289		7	9606
IEEELGSK	1	0	Unmodified	903.45493	0.45492709	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3.5	0.5			1	1		14.334	14.334	2	0.00046845	5691	DP1063-4	133.12	78.33			2.453	1.8288	5.1929	2	0	Median	79612000	23164000	56448000	1450	123	1376	2827;2828	6293;6294;6295;6296;6297;6298	6298		6	9606
IEELQLIVNDK	1	0	Unmodified	1312.7238	0.72383172	367	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	4	0				1		20.147	20.147	2	2.1781E-05	13436	DP1063-4	132.88	64.09			1.8686	1.2934	NaN	1	0	Median	5065500	1621900	3443700	1451	367	1377	2829	6299	6299		1	9606
IEFGVDVTTK	1	0	Unmodified	1107.5812	0.58119023	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	4	0				1		18.853	18.853	2	0.015055	11624	DP1063-4	90.906	28.188			NaN	NaN	NaN	0	0	Median	3209300	0	3209300	1452	194	1378	2830	6300;6301	6300		2	9606
IEGDETSTEAATR	0	1	Unmodified	1378.6212	0.62121715	325	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	5	0					2	13.945	13.945	2	0.0003967	5790	DP1063-5	128.88	84.017			NaN	NaN	NaN	0	0	Median	3561100	0	3561100	1453	325	1379	2831;2832	6302;6303;6304	6302		3	9606
IEGDPQGVQQAK	1	0	Unmodified	1268.6361	0.63607935	427	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	2	0		1				14.05	14.05	2	5.0794E-05	4231	DP1063-2	134.25	73.274			NaN	NaN	NaN	0	0	Median	4298800	0	4298800	1454	427	1380	2833	6305;6306	6306		2	9606
IEGTQESQMVGSSSTR	0	1	Oxidation (M)	1711.7683	0.76829209	620	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	1	0	1	0	1					14.083	14.083	2	0.00085363	3508	DP1063-1	125.54	95.21			NaN	NaN	NaN	0	0	Median	828680	0	828680	1455	620	1381	2834	6307;6308	6307	744	2	9606
IEGVYAR	0	1	Unmodified	806.42865	0.42865276	180	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	5	0					1	14.888	14.888	2	0.0021198	7005	DP1063-5	134.12	68.222			1.599	1.1942	NaN	1	0	Median	23408000	9343600	14064000	1456	180	1382	2835	6309;6310	6310		2	9606
IEISELNR	0	1	Unmodified	972.52401	0.52400971	101;22	CON__P35908v2;P35908;CON__P35908;P04264;CON__P04264	KRT2;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1	no	no	0	0	0	3	0.816		1	1	1		17.365	17.365	2	0.00099202	9589	DP1063-4	130.77	6.3919		+	NaN	NaN	NaN	0	0	Median	433210000	433210000	0	1457	22;101	1383	2836;2837;2838	6311;6312;6313;6314;6315;6316	6316		6	9606
IESLSSQLSNLQK	1	0	Unmodified	1445.7726	0.77257283	189	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	3	0			1			19.162	19.162	2	0.015545	12564	DP1063-3	84.658	37.471			NaN	NaN	NaN	0	0	Median	6172900	0	6172900	1458	189	1384	2839	6317	6317		1	9606
IETIEVMEDR	0	1	Oxidation (M)	1249.586	0.58601761	322	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	4	0				1		16.584	16.584	2	0.0013695	8640	DP1063-4	103.7	65.407			1.7343	1.0839	NaN	1	0	Median	7568800	2861800	4706900	1459	322	1385	2840	6318;6319	6319	391	2	9606
IETNENNLESAK	1	0	Unmodified	1360.647	0.64703797	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			14.713	14.713	2	1.0174E-08	6437	DP1063-3	185.6	157.42			1.1646	0.93517	NaN	1	0	Median	27608000	13498000	14110000	1460	449	1386	2841	6320;6321;6322;6323	6323		4	9606
IEVIEIMTDR	0	1	Oxidation (M)	1233.6275	0.6274885	141	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		18.623	18.623	2	0.0038216	11334	DP1063-4	90.906	33.728			2.7555	1.8684	NaN	1	0	Median	19586000	5247400	14338000	1461	141	1387	2842	6324;6325	6324	150	2	9606
IEVIEIMTDR	0	1	Unmodified	1217.6326	0.63257388	141	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		21.031	21.031	2	0.0038232	14541	DP1063-4	97.431	53.081			2.4708	1.5102	NaN	1	0	Median	8510100	2113600	6396500	1462	141	1387	2843	6326;6327	6326		2	9606
IEYNDQNDGSCDVK	1	0	Unmodified	1655.6733	0.67332907	70	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	0	1					15.052	15.052	2	0.0011089	4625	DP1063-1	115.33	92.834			NaN	NaN	NaN	0	0	Median	0	0	0	1463	70	1388	2844	6328	6328		1	9606
IFAPNHVVAK	1	0	Unmodified	1094.6237	0.62366417	436	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	15.037	15.037	2	0.002822	7178	DP1063-5	101.6	101.6			1.6483	1.3953	NaN	1	0	Median	7185100	2885300	4299800	1464	436	1389	2845	6329;6330	6330		2	9606
IFAQDGEGQR	0	1	Unmodified	1119.5309	0.530886	70	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	0	1					14.898	14.898	2	0.052259	4460	DP1063-1	67.993	38.419			1.4502	1.2613	NaN	1	0	Median	1795500	645720	1149800	1465	70	1390	2846	6331	6331		0	9606
IFCCHGGLSPDLQSMEQIR	0	1	Oxidation (M)	2263.0184	0.018392316	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	0	3.5	0.5			2	2		18.046	18.046	2;3	5.443E-08	10934	DP1063-3	194.59	174.17			NaN	NaN	NaN	0	0	Median	354200000	0	354200000	1466	260;365;366	1391	2847;2848;2849;2850	6332;6333;6334;6335;6336;6337;6338;6339;6340	6335	311	9	9606
IFCCHGGLSPDLQSMEQIR	0	1	Unmodified	2247.0235	0.023477694	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			2	2		19.784	19.784	2;3	5.6069E-19	13406	DP1063-3	225.33	186.89			NaN	NaN	NaN	0	0	Median	148800000	0	148800000	1467	260;365;366	1391	2851;2852;2853;2854	6341;6342;6343;6344;6345;6346;6347;6348	6344		8	9606
IFCCHGGLSPDLQSMEQIRR	0	2	Unmodified	2403.1246	0.12458872	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.67	0.471			1	2		18.633	18.633	3;4	5.1836E-05	11403	DP1063-4	119.56	91.514			NaN	NaN	NaN	0	0	Median	34746000	0	34746000	1468	260;365;366	1392	2855;2856;2857	6349;6350;6351;6352	6352		4	9606
IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR	1	1	Oxidation (M)	3970.7666	0.76658412	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					20.324	20.324	4	1.0638E-05	10732	DP1063-1	63.913	55.848			0.55987	0.52202	NaN	1	0	Median	9574900	5100400	4474600	1469	460	1393	2858	6353;6354	6354	574	2	9606
IFGVTTLDIVR	0	1	Unmodified	1232.7129	0.71287311	270	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		22.06	22.06	2	0.046028	15815	DP1063-4	74.162	26.339			NaN	NaN	NaN	0	0	Median	1970300	1970300	0	1470	270	1394	2859	6355	6355		1	9606
IFGYPVGIVGNNGVLFSESAK	1	0	Unmodified	2167.1314	0.13135511	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		23.289	23.289	2;3	6.6653E-74	17922	DP1063-3	300.49	300.49			1.4493	1.0942	10.763	4	0	Median	265100000	106640000	158460000	1471	624	1395	2860;2861;2862;2863	6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370	6359		15	9606
IFGYPVGIVGNNGVLFSESAKK	2	0	Unmodified	2295.2263	0.22631813	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			21.73	21.73	3	1.4793E-15	15968	DP1063-3	186.56	186.56			1.3078	1.1734	NaN	1	0	Median	36130000	14348000	21782000	1472	624	1396	2864	6371;6372	6372		2	9606
IFTSIGEDYDER	0	1	Unmodified	1443.6518	0.65178899	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4.5	0.5				1	1	18.824	18.824	2	0.00048062	11643	DP1063-4	136.52	136.52			1.7251	1.1405	NaN	1	0	Median	16058000	5582700	10476000	1473	249	1397	2865;2866	6373;6374;6375;6376;6377	6374		5	9606
IFVGNVSAACTSQELR	0	1	Unmodified	1750.8672	0.86721827	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	0			1			18.691	18.691	2	0.00024718	11884	DP1063-3	169.89	125.99			NaN	NaN	NaN	0	0	Median	10924000	10924000	0	1474	591	1398	2867	6378;6379	6378		2	9606
IGAEVYHNLK	1	0	Unmodified	1142.6084	0.60840804	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3.5	0.5			1	1		15.397	15.397	2	3.1472E-07	7085	DP1063-4	162.25	109.85			2.5022	1.732	NaN	1	0	Median	34452000	5762000	28690000	1475	123	1399	2868;2869	6380;6381;6382	6382		3	9606
IGASFLQR	0	1	Unmodified	890.4974	0.49740102	94	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	4	0				1		17.857	17.857	2	0.037793	10312	DP1063-4	85.265	43.836			NaN	NaN	NaN	0	0	Median	5776600	0	5776600	1476	94	1400	2870	6383	6383		1	9606
IGDLQAFQGHGAGNLAGLK	1	0	Unmodified	1865.9748	0.97479489	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				19.133	19.133	3	3.3451E-05	10915	DP1063-2	117.07	117.07			2.2486	1.8812	NaN	1	0	Median	33928000	10104000	23824000	1477	134	1401	2871	6384;6385;6386;6387	6384		4	9606
IGEEEIQKPEEK	2	0	Unmodified	1427.7144	0.71438925	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		4				14.558	14.558	2;3	3.1421E-15	4837	DP1063-2	219.5	168.07			1.0846	1.0361	NaN	1	0	Median	45802000	17955000	27847000	1478	513	1402	2872;2873;2874;2875	6388;6389;6390;6391;6392;6393;6394;6395;6396	6393		9	9606
IGEGTYGVVYK	1	0	Unmodified	1184.6077	0.60773933	120	P06493;P24941;Q00526	CDK1;CDK2;CDK3	Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	yes	no	0	0	0	4	0				1		17.501	17.501	2	0.045997	9815	DP1063-4	74.173	1.9427			NaN	NaN	NaN	0	0	Median	6471000	0	6471000	1479	120	1403	2876	6397	6397		1	9606
IGEHTPSALAIMENANVLAR	0	1	Oxidation (M)	2122.0841	0.084087341	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	1	0	4	0				1		18.814	18.814	3	2.2589E-05	11664	DP1063-4	91.065	91.065			2.1416	1.4912	NaN	1	0	Median	24107000	6902300	17204000	1480	98	1404	2877	6398;6399	6398	70	2	9606
IGEHTPSALAIMENANVLAR	0	1	Unmodified	2106.0892	0.089172718	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		21.354	21.354	3	5.8017E-05	14937	DP1063-4	142.4	101.08			NaN	NaN	NaN	0	0	Median	6397200	0	6397200	1481	98	1404	2878	6400;6401	6401		2	9606
IGGDAATTVNNSTPDFGFGGQK	1	0	Unmodified	2153.0025	0.0025257806	570	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2	0		1				19.525	19.525	2	0.0055893	11465	DP1063-2	98.943	58.83			NaN	NaN	NaN	0	0	Median	0	0	0	1482	570	1405	2879	6402	6402		1	9606
IGGIGTVPVGR	0	1	Unmodified	1024.6029	0.60292873	412	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2	1	1		1			17.441	17.441	2	2.3708E-05	10038	DP1063-3	131.06	63.892			1.7196	1.4003	11.227	2	0	Median	91641000	30557000	61084000	1483	412	1406	2880;2881	6403;6404;6405;6406;6407;6408;6409;6410	6408		8	9606
IGGVQQDTILAEGLHFR	0	1	Unmodified	1852.9795	0.97954591	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				2		20.593	20.593	2;3	1.6411E-42	13962	DP1063-4	252.12	231.47			1.6559	1.2373	NaN	1	0	Median	44233000	14400000	29833000	1484	598	1407	2882;2883	6411;6412;6413;6414;6415	6413		5	9606
IGIEIIKR	1	1	Unmodified	940.60695	0.60695147	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	3	0			1			17.035	17.035	2	0.0031279	9604	DP1063-3	102.72	9.4568			3.7046	3.3601	NaN	1	0	Median	16281000	3415700	12865000	1485	151	1408	2884	6416	6416		1	9606
IGLAEEIR	0	1	Unmodified	899.50763	0.50763136	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.6	0.8	3	1	1			19.997	19.997	2	1.3149E-16	7541	DP1063-1	183.89	25.515			1.3072	1.4193	29.712	3	0	Plateau	1369500000	590590000	778900000	1486	460	1409	2885;2886;2887;2888;2889	6417;6418;6419;6420;6421;6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436	6420		20	9606
IGLETSLR	0	1	Unmodified	887.50763	0.50763136	660	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	3	0			1			17.548	17.548	2	0.0026906	10317	DP1063-3	124.83	41.22			NaN	NaN	NaN	0	0	Median	12834000	0	12834000	1487	660	1410	2890	6437	6437		1	9606
IGLFGGAGVGK	1	0	Unmodified	974.55492	0.5549159	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			19.3	19.3	2	0.021892	12729	DP1063-3	69.598	44.148			1.8243	1.4649	NaN	1	0	Median	18946000	5937400	13008000	1488	121	1411	2891	6438	6438		1	9606
IGLIQFCLSAPK	1	0	Unmodified	1345.7428	0.74279303	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			21.945	21.945	2	0.0026565	16251	DP1063-3	110.53	53.618			NaN	NaN	NaN	0	0	Median	9368600	0	9368600	1489	320	1412	2892	6439;6440	6439		2	9606
IGNCPFSQR	0	1	Unmodified	1077.5026	0.50256276	37	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	4	0				1		15.768	15.768	2	0.0059651	7590	DP1063-4	101.72	57.274			NaN	NaN	NaN	0	0	Median	6120800	0	6120800	1490	37	1413	2893	6441	6441		1	9606
IGPLGLSPK	1	0	Unmodified	880.5382	0.53820321	231	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.983	17.983	2	0.0325	10736	DP1063-5	71.877	18.526			1.3553	1.1473	NaN	1	0	Median	26939000	12399000	14541000	1491	231	1414	2894	6442;6443	6442		2	9606
IGPYQPNVPVGIDYVIPK	1	0	Unmodified	1968.072	0.072049316	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				22.093	22.093	2	0.00028302	14863	DP1063-2	141.73	141.73			1.2333	1.0318	NaN	1	0	Median	19259000	7601300	11657000	1492	281	1415	2895	6444;6445	6445		2	9606
IGQGYLIK	1	0	Unmodified	890.52255	0.52255314	266	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		17.232	17.232	2	0.055746	9499	DP1063-4	72.138	25.144			2.1019	1.4549	NaN	1	0	Median	15026000	5214800	9811300	1493	266	1416	2896	6446	6446		1	9606
IGSFGPGEDLLYLR	0	1	Unmodified	1535.7984	0.79839365	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.575	22.575	2	3.6572E-05	13396	DP1063-1	164.65	135.1			1.0053	0.78772	NaN	1	0	Median	7953200	3550900	4402300	1494	43	1417	2897	6447;6448;6449	6448		3	9606
IGSFGPQEDLLFLR	0	1	Unmodified	1590.8406	0.84059282	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.21	0.607	34	3	1	1		33.31	33.31	2	4.0434E-13	16334	DP1063-2	194.17	158.62			1.2437	1.0742	15.111	19	0	Median	1101300000	485630000	615700000	1495	460	1418	2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935;2936	6450;6451;6452;6453;6454;6455;6456;6457;6458;6459;6460;6461;6462;6463;6464;6465;6466;6467;6468;6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508;6509;6510;6511;6512;6513;6514;6515;6516;6517;6518;6519;6520;6521;6522;6523;6524;6525	6516		76	9606
IGYPVMIK	1	0	Oxidation (M)	935.51502	0.51502492	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		1				17.748	17.748	2	0.045076	9078	DP1063-2	64.803	64.803			1.4013	1.1723	NaN	1	0	Median	77669000	32572000	45096000	1496	595	1419	2937	6526	6526	714	1	9606
IHEGCEEPATHNALAK	1	0	Unmodified	1775.8261	0.82608174	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1.5	0.5	1	1				13.517	13.517	3	0.00028574	3471	DP1063-2	93.716	77.832			1.5861	1.2757	3.0507	2	0	Median	13349000	5436000	7912800	1497	428	1420	2938;2939	6527;6528;6529;6530;6531;6532;6533	6532		7	9606
IHFPLATYAPVISAEK	1	0	Unmodified	1755.956	0.95595693	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			2	2		20.809	20.809	2;3	0.0002937	14208	DP1063-3	105.14	105.14			1.6542	1.3283	NaN	1	0	Median	220340000	56987000	163350000	1498	413;605	1421	2940;2941;2942;2943	6534;6535;6536;6537;6538;6539;6540;6541;6542	6534		9	9606
IHNAENIQPGEQK	1	0	Unmodified	1476.7321	0.732105	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	0	1					13.382	13.382	3	0.0024648	2748	DP1063-1	80.318	39.803			2.3007	1.9397	NaN	1	0	Median	2298700	694730	1603900	1499	442	1422	2944	6543;6544	6543		2	9606
IHNANPELTDGQIQAMLR	0	1	Oxidation (M)	2036.0109	0.010922397	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.31	1.32	5	3	2	2	1	17.451	17.451	2;3	9.6947E-08	6971	DP1063-1	167.18	167.18			1.2237	0.97426	15.355	9	0	Median	923960000	402620000	521330000	1500	460	1423	2945;2946;2947;2948;2949;2950;2951;2952;2953;2954;2955;2956;2957	6545;6546;6547;6548;6549;6550;6551;6552;6553;6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564;6565;6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579;6580;6581;6582;6583;6584	6547	575	40	9606
IHNANPELTDGQIQAMLR	0	1	Unmodified	2020.016	0.016007775	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.4	1.36	2	1		2		19.356	19.356	2;3	1.9532E-87	9547	DP1063-1	292.76	292.76			1.0736	0.8128	36.286	4	0	Median	186440000	83142000	103300000	1501	460	1423	2958;2959;2960;2961;2962	6585;6586;6587;6588;6589;6590;6591;6592;6593;6594;6595;6596;6597;6598;6599;6600	6591		16	9606
IIAATIENAQPILQIDNAR	0	1	Unmodified	2063.1375	0.13750312	17	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	4	0				1		21.215	21.215	2	0.00022903	14809	DP1063-4	164.81	101.15		+	NaN	NaN	NaN	0	0	Median	2201600	2201600	0	1502	17	1424	2963	6601	6601		1	9606
IIAHAQLLEQHR	0	1	Unmodified	1427.7997	0.79973106	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					15.245	15.245	3	7.4375E-05	4817	DP1063-1	137.01	114.12			2.1973	1.7456	NaN	1	0	Median	5955000	1406200	4548800	1503	222	1425	2964	6602;6603	6602		2	9606
IIANALSSEPACLAEIEEDKAR	1	1	Unmodified	2399.2002	0.20023931	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					20.053	20.053	3	1.2175E-11	10428	DP1063-1	176.39	143.22			1.72	1.6037	NaN	1	0	Median	8592900	2647400	5945400	1504	420	1426	2965	6604;6605	6604		2	9606
IIAPANMERPVR	0	2	Oxidation (M)	1381.75	0.75000367	551	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	1	1	3	0			1			14.414	14.414	3	0.0024119	6060	DP1063-3	77.062	49.964			0.98606	0.90154	NaN	1	0	Median	21450000	10473000	10977000	1505	551	1427	2966	6606;6607;6608;6609	6607	680	4	9606
IIAPPER	0	1	Unmodified	794.46504	0.46503826	349;409;411;528	P60709;P63261;P68133;P68032;P63267;P62736;Q562R1	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	4	0				1		14.949	14.949	2	0.0033379	6463	DP1063-4	123.99	30.396			NaN	NaN	NaN	0	0	Median	81898000	0	81898000	1506	349;409;411;528	1428	2967	6610;6611	6610		2	9606
IIAPPERK	1	1	Unmodified	922.56	0.56000128	349;409;411;528	P60709;P63261;P68133;P68032;P63267;P62736;Q562R1	ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	1	4	0				1		13.435	13.435	2	0.0056982	4650	DP1063-4	87.754	57.142			2.4634	2.395	NaN	1	0	Median	9317600	2724400	6593200	1507	349;409;411;528	1429	2968	6612;6613	6613		2	9606
IIDEVVNK	1	0	Unmodified	928.52295	0.52294707	88	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	15.532	15.532	2	0.021287	7685	DP1063-5	94.006	17.232			2.9445	2.4925	NaN	1	0	Median	16746000	4992900	11754000	1508	88	1430	2969	6614;6615	6614		2	9606
IIDVDALWSHR	0	1	Unmodified	1323.6935	0.69353465	613	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	2	0		1				20.773	20.773	3	0.003358	13182	DP1063-2	89.561	49.981			NaN	NaN	NaN	0	0	Median	7807900	0	7807900	1509	613	1431	2970	6616	6616		1	9606
IIDVVYNASNNELVR	0	1	Unmodified	1717.8999	0.89989861	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					2	19.869	19.869	2;3	1.3811E-08	13187	DP1063-5	224.42	224.42			1.6609	1.2404	1.2104	2	0	Median	66804000	23316000	43488000	1510	368	1432	2971;2972	6617;6618;6619;6620;6621;6622;6623	6618		7	9606
IIEDQQESLNK	1	0	Unmodified	1315.662	0.66195975	116	P05455	SSB	Lupus La protein	yes	yes	0	0	0	4	0				1		15.076	15.076	2	0.00084984	6721	DP1063-4	117.7	54.133			2.2006	1.5232	NaN	1	0	Median	8170100	2157600	6012600	1511	116	1433	2973	6624;6625;6626	6625		3	9606
IIEEAPAPGIK	1	0	Unmodified	1136.6441	0.64412484	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		16.765	16.765	2	5.4831E-06	7440	DP1063-2	151.44	128.01			1.2441	1.0041	29.742	4	0	Median	978890000	430940000	547950000	1512	595	1434	2974;2975;2976;2977	6627;6628;6629;6630;6631;6632;6633;6634;6635;6636;6637;6638;6639;6640;6641;6642	6628		16	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Oxidation (M)	2670.3033	0.30332417	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.6	0.8	3	1	1			19.99	19.99	2;3	3.7951E-08	9816	DP1063-1	100.53	100.53			0.9487	0.78839	26.476	5	0	Median	373700000	182980000	190720000	1513	460	1435	2978;2979;2980;2981;2982	6643;6644;6645;6646;6647;6648;6649;6650;6651;6652;6653;6654;6655;6656;6657;6658;6659;6660	6645	576	17	9606
IIEEAPATIATPAVFEHMEQCAVK	1	0	Unmodified	2654.3084	0.30840955	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				21.402	21.402	2;3	5.2545E-10	12033	DP1063-1	160.52	160.52			1.0071	0.92182	14.823	3	0	Plateau	193590000	92414000	101180000	1514	460	1435	2983;2984;2985	6661;6662;6663;6664;6665;6666;6667;6668;6669;6670;6671;6672;6673;6674;6675	6664		15	9606
IIEFVPTK	1	0	Unmodified	945.55352	0.55351892	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		18.578	18.578	2	3.5696E-07	10181	DP1063-2	157.21	82.692			1.2591	1.0603	14.398	3	0	Plateau	670900000	130530000	540370000	1515	460	1436	2986;2987;2988;2989	6676;6677;6678;6679;6680;6681;6682;6683;6684;6685;6686;6687;6688;6689	6681		14	9606
IIEFVPTKTPYDPR	1	1	Unmodified	1674.8981	0.8981077	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.948	18.948	3	0.011714	9067	DP1063-1	65.043	18.837			1.2644	1.1789	NaN	1	0	Median	9426200	4391200	5035000	1516	460	1437	2990	6690;6691	6691		2	9606
IIETLTQQLQAK	1	0	Unmodified	1384.7926	0.79257999	646	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	5	0					1	18.815	18.815	2	0.0025028	11845	DP1063-5	112.3	46.948			NaN	NaN	NaN	0	0	Median	4205200	0	4205200	1517	646	1438	2991	6692	6692		1	9606
IIEVVDAIMTTAQSHQR	0	1	Oxidation (M)	1926.9833	0.98331066	433	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	1	0	2	0		1				19.199	19.199	3	0.0083173	11062	DP1063-2	52.862	32.423			1.6249	1.1735	NaN	1	0	Median	19637000	7994000	11643000	1518	433	1439	2992	6693	6693	545	1	9606
IIGLDQVAGMSETALPGAFK	1	0	Oxidation (M)	2033.0503	0.050327596	252	P35579	MYH9	Myosin-9	yes	yes	0	1	0	1	0	1					21.977	21.977	2	0.0089197	12743	DP1063-1	95.57	56.145			NaN	NaN	NaN	0	0	Median	4922200	0	4922200	1519	252	1440	2993	6694	6694	296	1	9606
IILDLISESPIK	1	0	Unmodified	1339.7963	0.79626839	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.5	0.5			1	1		22.624	22.624	2	0.00011922	17089	DP1063-3	157.66	157.66			2.9528	2.3711	NaN	1	0	Median	23799000	5464000	18335000	1520	362	1441	2994;2995	6695;6696;6697;6698;6699;6700	6696		6	9606
IILLAEGR	0	1	Unmodified	883.5491	0.54910224	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	4	0				1		18.484	18.484	2	0.014269	11137	DP1063-4	99.375	8.5983			NaN	NaN	NaN	0	0	Median	13424000	0	13424000	1521	201	1442	2996	6701	6701		1	9606
IINDLLQSLR	0	1	Unmodified	1183.6925	0.69247202	570	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2	0		1				21.388	21.388	2	9.3058E-06	13944	DP1063-2	141.48	88.998			2.3793	1.7304	NaN	1	0	Median	13360000	3528900	9831100	1522	570	1443	2997	6702;6703	6702		2	9606
IINDNATYCR	0	1	Unmodified	1238.5714	0.5713706	41	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			2			15.087	15.087	2	0.0082221	6936	DP1063-3	97.635	62.197			NaN	NaN	NaN	0	0	Median	6651700	0	6651700	1523	41	1444	2998;2999	6704;6705;6706	6704		3	9606
IINEPTAAAIAYGLDK	1	0	Unmodified	1658.8879	0.88793694	153;152	P11142;P54652;P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	no	no	0	0	0	3	0			1			20.687	20.687	2	0.0015669	14635	DP1063-3	147.33	147.33			2.8271	2.2701	NaN	1	0	Median	68908000	16639000	52269000	1524	153;152	1445	3000	6707;6708;6709;6710	6709		4	9606
IINEPTAAAIAYGLDKK	2	0	Unmodified	1786.9829	0.98289996	153	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			2			19.315	19.315	2;3	0.00014984	12789	DP1063-3	110.22	110.22			3.2043	2.875	9.7065	2	0	Median	204830000	45398000	159430000	1525	153	1446	3001;3002	6711;6712;6713;6714;6715;6716	6713		6	9606
IINEPTAAAIAYGLDKR	1	1	Unmodified	1814.989	0.98904797	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			19.56	19.56	3	0.0038998	13049	DP1063-3	92.211	55.819			NaN	NaN	NaN	0	0	Median	24976000	0	24976000	1526	152	1447	3003	6717	6717		1	9606
IINEPTAAAIAYGLDR	0	1	Unmodified	1686.8941	0.89408495	149;176	P17066;P0DMV9;P0DMV8	HSPA6;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.07	0.249			28	2		27.11	27.11	2;3	4.4449E-14	14969	DP1063-3	218.02	156.25			2.9483	2.9869	25.913	4	0	Linear	845950000	206220000	639730000	1527	176;149	1448	3004;3005;3006;3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017;3018;3019;3020;3021;3022;3023;3024;3025;3026;3027;3028;3029;3030;3031;3032;3033	6718;6719;6720;6721;6722;6723;6724;6725;6726;6727;6728;6729;6730;6731;6732;6733;6734;6735;6736;6737;6738;6739;6740;6741;6742;6743;6744;6745;6746;6747;6748;6749;6750;6751;6752;6753;6754;6755;6756;6757;6758;6759	6719		42	9606
IIPGFMCQGGDFTR	0	1	Oxidation (M)	1613.733	0.73303298	401	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	1	0	5	0					1	19.381	19.381	2	0.0010513	12506	DP1063-5	107.03	82.75			2.0267	1.5137	NaN	1	0	Median	66746000	20313000	46433000	1528	401	1449	3034	6760;6761;6762;6763;6764;6765	6761	494	6	9606
IIPGFMCQGGDFTR	0	1	Unmodified	1597.7381	0.73811836	401	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	5	0					1	20.702	20.702	2	0.0021442	14232	DP1063-5	141.88	117.41			2.4406	1.8228	NaN	1	0	Median	17431000	5335300	12096000	1529	401	1449	3035	6766;6767	6766		2	9606
IIQLLDDYPK	1	0	Unmodified	1216.6703	0.67033959	115	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		20.45	20.45	2	0.00082726	13782	DP1063-4	114.84	37.524			1.3143	0.9097	NaN	1	0	Median	16444000	7360100	9084400	1530	115	1450	3036	6768;6769;6770;6771	6769		4	9606
IIQQAGQVWFPDSAFK	1	0	Unmodified	1833.9414	0.94136949	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.24	0.73	30	2		2		27.147	27.147	2;3	7.9746E-22	12525	DP1063-1	228.61	228.61			1.2163	0.98425	15.676	10	0	Median	663350000	294910000	368440000	1531	460	1451	3037;3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070	6772;6773;6774;6775;6776;6777;6778;6779;6780;6781;6782;6783;6784;6785;6786;6787;6788;6789;6790;6791;6792;6793;6794;6795;6796;6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807;6808;6809;6810;6811;6812;6813;6814;6815;6816;6817;6818;6819;6820;6821;6822;6823;6824;6825;6826;6827	6774		56	9606
IIQQAGQVWFPDSAYK	1	0	Unmodified	1849.9363	0.93628412	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.066	21.066	2	0.0021212	11306	DP1063-1	117.95	117.95			1.4311	1.1058	NaN	1	0	Median	11950000	2819500	9130900	1532	43	1452	3071;3072	6828;6829;6830;6831;6832	6828		5	9606
IIQTYEMMIVR	0	1	2 Oxidation (M)	1427.7153	0.71525765	540	Q6ZR08	DNAH12	Dynein heavy chain 12, axonemal	yes	yes	0	2	0	1	0	1					20.872	20.872	2	0.027829	11424	DP1063-1	47.574	7.726			1.2926	1.0108	NaN	1	0	Median	9881600	4290600	5591000	1533	540	1453	3073	6833	6833	672;673	1	9606
IISNASCTTNCLAPLAK	1	0	Unmodified	1832.9125	0.91245391	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.077	18.077	2	5.8397E-11	10549	DP1063-4	193.11	164.88			2.4203	1.6753	NaN	1	0	Median	38328000	10951000	27378000	1534	102	1454	3074	6834;6835;6836;6837	6836		4	9606
IISSIEQK	1	0	Unmodified	916.52295	0.52294707	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				1		14.97	14.97	2	0.0097698	6543	DP1063-4	104.37	50.811			NaN	NaN	NaN	0	0	Median	7485800	0	7485800	1535	371	1455	3075	6838;6839	6839		2	9606
IISSIEQKEENKGGEDK	3	0	Unmodified	1902.9535	0.95345032	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	2	4	0				1		13.782	13.782	3	0.041229	5055	DP1063-4	87.02	49.426			NaN	NaN	NaN	0	0	Median	2231800	0	2231800	1536	371	1456	3076	6840	6840		1	9606
IITEGFEAAKEK	2	0	Unmodified	1334.7082	0.70818166	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	1	3	0			1			15.941	15.941	3	0.040215	8103	DP1063-3	66.538	35.809			NaN	NaN	NaN	0	0	Median	4938100	0	4938100	1537	268	1457	3077	6841	6841		1	9606
IITHPNFNGNTLDNDIMLIK	1	0	Oxidation (M)	2298.1678	0.16781697	10	CON__P00761			yes	yes	0	1	0	3.09	1.23	7	8	11	16	5	29.111	29.111	2;3	4.8055E-12	14198	DP1063-3	199.84	176.35		+	NaN	NaN	NaN	0	0	Median	5163800000	5163800000	0	1538	10	1458	3078;3079;3080;3081;3082;3083;3084;3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124	6842;6843;6844;6845;6846;6847;6848;6849;6850;6851;6852;6853;6854;6855;6856;6857;6858;6859;6860;6861;6862;6863;6864;6865;6866;6867;6868;6869;6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880;6881;6882;6883;6884;6885;6886;6887;6888;6889;6890;6891;6892;6893;6894;6895;6896;6897;6898;6899;6900;6901;6902;6903;6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915;6916;6917;6918;6919;6920	6866	8	79	
IITHPNFNGNTLDNDIMLIK	1	0	Unmodified	2282.1729	0.17290235	10	CON__P00761			yes	yes	0	0	0	3.12	1.09	2	6	4	11	1	28.048	28.048	2;3	1.8304E-20	15010	DP1063-3	205.66	179.54		+	NaN	NaN	NaN	0	0	Median	2078399999.9999998	2078399999.9999998	0	1539	10	1458	3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146;3147;3148	6921;6922;6923;6924;6925;6926;6927;6928;6929;6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958	6937		38	
IITITGTQDQIQNAQYLLQNSVK	1	0	Unmodified	2588.381	0.38098087	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			22.746	22.746	2;3	8.159100000000001E-29	17276	DP1063-3	285.04	285.04			2.7497	2.208	10.522	2	0	Median	44741000	10376000	34364000	1540	362	1459	3149;3150	6959;6960;6961;6962	6961		4	9606
IITLAGPTNAIFK	1	0	Unmodified	1357.7969	0.79693709	508	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		21.249	21.249	2	0.00035211	14769	DP1063-4	155.53	110.38			2.6437	1.8299	NaN	1	0	Median	17780000	4537700	13243000	1541	508	1460	3151	6963;6964;6965;6966	6963		4	9606
IITLTGPTNAIFK	1	0	Unmodified	1387.8075	0.80750177	507	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		21.19	21.19	2	0.00053853	14744	DP1063-4	151.83	81.01			3.2229	2.2308	NaN	1	0	Median	12678000	2947800	9730200	1542	507	1461	3152	6967;6968	6968		2	9606
IIVDELKQEVISTSSK	2	0	Unmodified	1787.988	0.98804492	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	1	4	0				3		19.419	19.419	2;3	8.5335E-10	12437	DP1063-4	201.09	127.19			2.4517	2.5461	NaN	1	0	Median	17873000	2679200	15193000	1543	408	1462	3153;3154;3155	6969;6970;6971;6972	6971		4	9606
IKAEYEGDGIPTVFVAVAGR	1	1	Unmodified	2091.1001	0.10005498	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	1	4	0				1		20.882	20.882	3	0.0028845	14395	DP1063-4	68.639	68.639			1.9964	1.941	NaN	1	0	Median	9277600	3428900	5848700	1544	194	1463	3156	6973;6974	6973		2	9606
IKDPDASKPEDWDER	2	1	Unmodified	1799.8326	0.83260691	223	P27797	CALR	Calreticulin	yes	yes	0	0	2	3	0			1			15.426	15.426	3	0.0058317	7448	DP1063-3	64.476	64.476			2.0129	2.0159	NaN	1	0	Median	13838000	4914800	8923400	1545	223	1464	3157	6975	6975		1	9606
IKFEMEQNLR	1	1	Oxidation (M)	1322.6653	0.66527099	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	1.67	0.943	2		1			15.756	15.756	2;3	0.0039208	7702	DP1063-3	94.409	53.415		+	NaN	NaN	NaN	0	0	Median	191960000	191960000	0	1546	251	1465	3158;3159;3160	6976;6977;6978;6979	6979	287	4	9606
IKFEMEQNLR	1	1	Unmodified	1306.6704	0.67035637	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			17.492	17.492	3	0.049456	10212	DP1063-3	54.784	34.321		+	NaN	NaN	NaN	0	0	Median	39207000	39207000	0	1547	251	1465	3161	6980	6980		1	9606
IKGEHPGLSIGDVAK	2	0	Unmodified	1519.8358	0.83584179	4	B2RPK0;P09429	HMGB1P1;HMGB1	Putative high mobility group protein B1-like 1;High mobility group protein B1	yes	no	0	0	1	4	0				1		15.665	15.665	3	0.0013213	7476	DP1063-4	89.624	68.531			2.3101	2.3991	NaN	1	0	Median	7739000	2153900	5585200	1548	4	1466	3162	6981	6981		1	9606
IKYPENFFLLR	1	1	Unmodified	1438.7973	0.79727144	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.8	0.748			2	2	1	20.996	20.996	2;3	3.3951E-07	14503	DP1063-4	177.44	133.25			NaN	NaN	NaN	0	0	Median	339840000	0	339840000	1549	260;365;366	1467	3163;3164;3165;3166;3167	6982;6983;6984;6985;6986;6987;6988;6989;6990;6991	6987		10	9606
ILATPPQEDAPSVDIANIR	0	1	Unmodified	2019.0637	0.063669474	227	P29401	TKT	Transketolase	yes	yes	0	0	0	3	0			1			20.142	20.142	2	0.013629	13801	DP1063-3	88.163	48.245			NaN	NaN	NaN	0	0	Median	6419600	0	6419600	1550	227	1468	3168	6992	6992		1	9606
ILAVNGQDVR	0	1	Unmodified	1083.6037	0.60365701	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1	0	1					16.398	16.398	2	0.0002901	6102	DP1063-1	136.8	76.037			NaN	NaN	NaN	0	0	Median	4228300	0	4228300	1551	484	1469	3169	6993;6994	6994		2	9606
ILDEIEEHNIK	1	0	Unmodified	1351.6983	0.69834526	498	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	4	0				1		16.925	16.925	2	0.026833	9091	DP1063-4	80.755	43.411			NaN	NaN	NaN	0	0	Median	5117100	0	5117100	1552	498	1470	3170	6995	6995		1	9606
ILDSVGIEADDDRLNK	1	1	Unmodified	1771.8952	0.89520716	114	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	1	5	0					1	17.894	17.894	2	0.037162	10620	DP1063-5	101.6	67.209			NaN	NaN	NaN	0	0	Median	0	0	0	1553	114	1471	3171	6996	6996		1	9606
ILELDQFK	1	0	Unmodified	1004.5542	0.5542472	163	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	3	0			1			20.003	20.003	2	0.044181	13754	DP1063-3	77.282	9.3017			1.4438	1.1594	NaN	1	0	Median	14862000	6660600	8201600	1554	163	1472	3172	6997;6998	6998		2	9606
ILELSGSSSEDSEK	1	0	Unmodified	1479.694	0.69404774	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.845	16.845	2	0.0064654	6527	DP1063-1	88.441	64.059			1.9004	1.4993	NaN	1	0	Median	4397900	1486200	2911700	1555	420	1473	3173	6999	6999		1	9606
ILEPGLNILIPVLDR	0	1	Unmodified	1674.008	0.0079924964	650	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				1		24.992	24.992	2	0.010034	19190	DP1063-4	88.441	58.968			NaN	NaN	NaN	0	0	Median	0	0	0	1556	650	1474	3174	7000	7000		1	9606
ILFRPVASQLPR	0	2	Unmodified	1395.8351	0.83505393	249	P35232	PHB	Prohibitin	yes	yes	0	0	1	4	0				1		18.35	18.35	3	0.0072885	10955	DP1063-4	76.165	53.672			1.8932	1.6975	NaN	1	0	Median	28172000	11010000	17161000	1557	249	1475	3175	7001;7002;7003;7004	7001		4	9606
ILGADTSVDLEETGR	0	1	Unmodified	1574.7788	0.77878042	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		18.918	18.918	2	9.1154E-11	12159	DP1063-3	199.19	118.43			NaN	NaN	NaN	0	0	Median	42830000	0	42830000	1558	207	1476	3176;3177	7005;7006;7007	7006		3	9606
ILGLLDAYLK	1	0	Unmodified	1117.6747	0.67469669	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3.5	0.5			3	3		23.449	23.449	2	0.002519	18145	DP1063-3	113.26	51.293			NaN	NaN	NaN	0	0	Median	9449700	9449700	0	1559	218	1477	3178;3179;3180;3181;3182;3183	7008;7009;7010;7011;7012;7013;7014;7015	7008		8	9606
ILGSGISSSSVLHGMVFK	1	0	Oxidation (M)	1833.9659	0.96586969	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	3	0			2			19.241	19.241	2;3	0.0061811	12631	DP1063-3	106.17	62.57			NaN	NaN	NaN	0	0	Median	21760000	0	21760000	1560	319	1478	3184;3185	7016;7017;7018;7019	7018	383	4	9606
ILIANTGMDTDKIK	2	0	Oxidation (M)	1547.8229	0.82289384	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	1	3	0			1			16.212	16.212	3	0.0003675	8474	DP1063-3	132.06	104.72			5.4467	4.8869	NaN	1	0	Median	29812000	5680300	24132000	1561	419	1479	3186	7020;7021	7021	521	2	9606
ILKEEQELYQK	2	0	Unmodified	1419.7609	0.76094551	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		2				15.861	15.861	2;3	1.2613E-11	6521	DP1063-2	211.78	157.58			NaN	NaN	NaN	0	0	Median	54714000	0	54714000	1562	654	1480	3187;3188	7022;7023;7024;7025	7022		4	9606
ILLAELEQLK	1	0	Unmodified	1168.7067	0.7067251	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			21.75	21.75	2	0.023733	16024	DP1063-3	69.812	39.125			2.5838	2.0748	NaN	1	0	Median	7805600	1977900	5827700	1563	136	1481	3189	7026	7026		1	9606
ILMEHIHK	1	0	Oxidation (M)	1035.5535	0.55353569	424	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	1	0	5	0					1	12.925	12.925	2	0.035701	4713	DP1063-5	67.981	43.087			2.0625	1.7459	NaN	1	0	Median	3408400	1299200	2109200	1564	424	1482	3190	7027	7027	537	1	9606
ILMVGLDAAGK	1	0	Oxidation (M)	1102.6056	0.60563084	181	P18085;P84085;P84077;P61204	ARF4;ARF5;ARF1;ARF3	ADP-ribosylation factor 4;ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3	yes	no	0	1	0	5	0					1	18.161	18.161	2	0.0098814	11010	DP1063-5	74.376	74.376			2.0363	1.7237	NaN	1	0	Median	20729000	8171800	12557000	1565	181	1483	3191	7028;7029;7030;7031	7031	230	4	9606
ILNVPQELYEK	1	0	Unmodified	1344.7289	0.7289171	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.18	0.625	30	1	1	1		26.468	26.468	2	7.0635E-08	9795	DP1063-1	176.33	149.28			1.297	1.218	14.747	7	0	Median	928820000	410180000	518640000	1566	460	1484	3192;3193;3194;3195;3196;3197;3198;3199;3200;3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211;3212;3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223;3224	7032;7033;7034;7035;7036;7037;7038;7039;7040;7041;7042;7043;7044;7045;7046;7047;7048;7049;7050;7051;7052;7053;7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064;7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085;7086;7087	7035		56	9606
ILPEYLSNWTMEK	1	0	Unmodified	1622.8014	0.80143012	89	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	3	0			1			21.99	21.99	2	0.024048	16300	DP1063-3	79.741	41.027			NaN	NaN	NaN	0	0	Median	0	0	0	1567	89	1485	3225	7088	7088		1	9606
ILPTLEAVAALGNK	1	0	Unmodified	1408.829	0.8289655	457	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		22.035	22.035	2	0.0044557	15784	DP1063-4	99.788	63.47			NaN	NaN	NaN	0	0	Median	3495900	0	3495900	1568	457	1486	3226	7089	7089		1	9606
ILQEHEQIK	1	0	Unmodified	1136.619	0.61897272	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				13.86	13.86	2	0.0015044	3927	DP1063-2	141.48	66.371			NaN	NaN	NaN	0	0	Median	1717600	0	1717600	1569	483	1487	3227	7090;7091	7090		2	9606
ILQEHEQIKK	2	0	Unmodified	1264.7139	0.71393574	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	2	0		1				12.839	12.839	3	0.033992	2707	DP1063-2	44.425	24.218			2.6139	2.4969	NaN	1	0	Median	2933700	753370	2180300	1570	483	1488	3228	7092	7092		1	9606
ILQLVATGAVR	0	1	Unmodified	1139.7026	0.70264277	298	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	2	0		1				19.041	19.041	2	0.011767	10829	DP1063-2	87.298	29.338			NaN	NaN	NaN	0	0	Median	4169700	0	4169700	1571	298	1489	3229	7093	7093		1	9606
ILQNEPLPER	0	1	Unmodified	1207.6561	0.65608651	87	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3	0			1			16.544	16.544	2	0.018538	9002	DP1063-3	87.476	36.598			NaN	NaN	NaN	0	0	Median	10063000	0	10063000	1572	87	1490	3230	7094	7094		1	9606
ILSGVVTK	1	0	Unmodified	815.51165	0.5116541	376	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	15.686	15.686	2	0.0093487	7923	DP1063-5	113.89	42.546			3.4981	2.9612	NaN	1	0	Median	98830000	22293000	76537000	1573	376	1491	3231	7095;7096	7096		2	9606
ILVATNLFGR	0	1	Unmodified	1102.6499	0.64987892	34	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	yes	no	0	0	0	4	0				1		20.921	20.921	2	5.7607E-06	14387	DP1063-4	143.89	68.674			3.3738	2.0813	NaN	1	0	Median	9339600	2227300	7112300	1574	34	1492	3232	7097;7098	7097		2	9606
ILVTLLHTLER	0	1	Unmodified	1306.7973	0.79727144	612	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	4	0				1		20.495	20.495	3	0.0022381	13839	DP1063-4	96.171	42.604			NaN	NaN	NaN	0	0	Median	2177000	0	2177000	1575	612	1493	3233	7099	7099		1	9606
IMDPNIVGSEHYDVAR	0	1	Oxidation (M)	1830.857	0.85704752	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3	0			1			17.196	17.196	3	0.00022756	9848	DP1063-3	97.904	82.277			2.4037	1.7682	NaN	1	0	Median	25527000	6969300	18558000	1576	121	1494	3234	7100;7101	7101	106	2	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Oxidation (M)	2170.1052	0.10521671	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		20.338	20.338	2;3	1.9814E-182	14039	DP1063-3	363.11	363.11			1.2514	1.0786	14.564	3	0	Plateau	251010000	115070000	135940000	1577	111	1495	3235;3236;3237	7102;7103;7104;7105;7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116	7103	100	15	9606
IMDQAITVGAPVIGLNDSGGAR	0	1	Unmodified	2154.1103	0.11030209	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.148	21.148	2	2.8589E-40	15195	DP1063-3	240.5	174.24			1.3675	1.0795	NaN	1	0	Median	63720000	25353000	38367000	1578	111	1495	3238;3239	7117;7118;7119;7120;7121;7122	7121		6	9606
IMGPNYTPGKK	2	0	Oxidation (M)	1220.6223	0.62234354	165	P13639	EEF2	Elongation factor 2	yes	yes	0	1	1	2	0		1				13.962	13.962	3	0.03647	4107	DP1063-2	42.802	20.161			1.6165	1.5442	NaN	1	0	Median	4401500	1845100	2556300	1579	165	1496	3240	7123	7123	208	1	9606
IMLFTNEDNPHGNDSAK	1	0	Oxidation (M)	1917.8527	0.85269042	163	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	1	0	3	0			1			16.789	16.789	3	0.00079031	9251	DP1063-3	70.784	56.053			1.7771	1.427	NaN	1	0	Median	15400000	5023800	10376000	1580	163	1497	3241	7124;7125	7125	202	2	9606
IMLPWDPTGK	1	0	Oxidation (M)	1172.59	0.58998078	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		21.314	21.314	2	0.009554	14910	DP1063-4	76.17	26.747			1.8656	1.2913	NaN	1	0	Median	7492200	2706500	4785700	1581	200	1498	3242	7126;7127;7128	7127	257	3	9606
IMLPWDPTGK	1	0	Unmodified	1156.5951	0.59506616	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		22.161	22.161	2	0.030488	15945	DP1063-4	66.27	23.922			1.5028	1.0402	NaN	1	0	Median	3073500	1228000	1845500	1582	200	1498	3243	7129	7129		1	9606
IMNTFSVVPSPK	1	0	Oxidation (M)	1334.6904	0.69042311	414;129;471	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		18.329	18.329	2	0.0014837	10891	DP1063-4	99.283	72.768			1.9161	1.4285	7.6154	2	0	Median	155010000	47421000	107590000	1583	129;414;471	1499	3244;3245	7130;7131;7132;7133;7134;7135	7134	124	6	9606
IMNTFSVVPSPK	1	0	Unmodified	1318.6955	0.69550848	414;129;471	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		19.343	19.343	2	0.0004012	12837	DP1063-3	146.11	97.047			1.4651	1.1765	NaN	1	0	Median	47084000	16717000	30367000	1584	129;414;471	1499	3246;3247	7136;7137;7138;7139;7140;7141	7140		6	9606
IMNVIGEPIDER	0	1	Oxidation (M)	1400.697	0.69696505	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3	0			1			17.992	17.992	2	0.0088141	10937	DP1063-3	78.342	54.988			1.791	1.2917	NaN	1	0	Median	14746000	5151600	9594700	1585	121	1500	3248	7142;7143	7142	107	2	9606
INALTAASEAACLIVSVDETIKNPR	1	1	Unmodified	2655.3902	0.39016535	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	3	0			1			25.561	25.561	3	5.9195E-07	20642	DP1063-3	129.26	96.107			NaN	NaN	NaN	0	0	Median	5401600	0	5401600	1586	601	1501	3249	7144;7145	7144		2	9606
INEILSNALK	1	0	Unmodified	1113.6394	0.63937381	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2.5	0.5		1	1			18.995	18.995	2	2.0249E-05	10747	DP1063-2	134.05	80.084			1.2801	1.0492	5.9018	2	0	Median	109380000	46103000	63282000	1587	323	1502	3250;3251	7146;7147;7148;7149;7150;7151;7152;7153	7146		8	9606
INFDKYHPGYFGK	2	0	Unmodified	1584.7725	0.77251325	287	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	1	5	0					1	17.579	17.579	3	0.0023302	10221	DP1063-5	93.839	64.034			2.1297	2.081	NaN	1	0	Median	8473400	2112700	6360700	1588	287	1503	3252	7154	7154		1	9606
INGCAIQCR	0	1	Unmodified	1090.5012	0.50118255	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		14.395	14.395	2	0.00068073	4590	DP1063-2	129.4	79.974			1.3697	0.982	NaN	1	0	Median	87359000	6969100	80389000	1589	154	1504	3253;3254;3255	7155;7156;7157;7158;7159;7160	7156		6	9606
INGWAVECR	0	1	Unmodified	1103.5182	0.51821282	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.474	17.474	2	0.0010238	10126	DP1063-3	125.31	92.474			1.4035	1.1302	NaN	1	0	Median	82578000	28611000	53967000	1590	110	1505	3256	7161;7162;7163;7164	7162		4	9606
INISEGNCPER	0	1	Unmodified	1287.5877	0.58774895	508;507	Q15365;Q15366;P57721	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	no	no	0	0	0	4	0				1		15.334	15.334	2	5.8089E-10	6998	DP1063-4	190.02	144.34			2.4478	1.6744	NaN	1	0	Median	20971000	6494300	14477000	1591	507;508	1506	3257	7165;7166;7167;7168	7166		4	9606
INLNLIYDHNPK	1	0	Unmodified	1452.7725	0.77251325	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				18.627	18.627	3	0.021988	10302	DP1063-2	68.515	29.801			NaN	NaN	NaN	0	0	Median	7789900	0	7789900	1592	82	1507	3258	7169;7170	7170		2	9606
INQVFHGSCITEGNELTK	1	0	Unmodified	2045.984	0.98403894	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.472	17.472	3	0.00076002	7213	DP1063-1	111.73	78.596			NaN	NaN	NaN	0	0	Median	5078500	0	5078500	1593	420	1508	3259	7171;7172	7171		2	9606
INTQWLLTSGTTEANAWK	1	0	Unmodified	2033.0218	0.02180466	32	CON__Streptavidin			yes	yes	0	0	0	4.33	1.11		1		1	4	21.658	21.658	2;3	4.5389000000000005E-77	21908	DP1063-5	357.95	279.63		+	NaN	NaN	NaN	0	0	Median	8905100000	8905100000	0	1594	32	1509	3260;3261;3262;3263;3264;3265	7173;7174;7175;7176;7177;7178;7179;7180;7181;7182;7183;7184;7185;7186;7187;7188;7189;7190;7191;7192;7193;7194;7195;7196;7197;7198;7199;7200;7201;7202;7203;7204;7205;7206;7207;7208;7209;7210;7211;7212;7213;7214;7215;7216;7217;7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229;7230;7231;7232;7233;7234;7235;7236;7237;7238;7239;7240;7241;7242;7243;7244;7245;7246;7247;7248;7249;7250;7251;7252;7253;7254;7255;7256;7257;7258;7259;7260;7261;7262;7263;7264;7265;7266	7189		94	
INTQWLLTSGTTEANAWKSTLVGHDTFTK	2	0	Unmodified	3219.62	0.62004194	32	CON__Streptavidin			yes	yes	0	0	1	5	0					1	22.446	22.446	4	4.3218E-10	16335	DP1063-5	127.94	92.392		+	NaN	NaN	NaN	0	0	Median	8968600	8968600	0	1595	32	1510	3266	7267;7268;7269	7267		3	
INVYYNEATGGK	1	0	Unmodified	1327.6408	0.64083038	414	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	3.5	0.5			1	1		16.965	16.965	2	1.3709E-06	9066	DP1063-4	176.33	71.224			2.1782	1.7491	NaN	1	0	Median	186660000	45843000	140820000	1596	414	1511	3267;3268	7270;7271;7272;7273;7274;7275	7274		6	9606
IPAFLNVVDIAGLVK	1	0	Unmodified	1567.9338	0.93376492	632	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	4	0				1		25.218	25.218	2	0.00045075	19447	DP1063-4	142.97	124.44			NaN	NaN	NaN	0	0	Median	1973100	0	1973100	1597	632	1512	3269	7276;7277	7276		2	9606
IPDEFDNDPILVQQLR	0	1	Unmodified	1910.9738	0.97379183	523	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				2		21.914	21.914	2	0.00051751	15614	DP1063-4	139.46	97.923			NaN	NaN	NaN	0	0	Median	3073700	0	3073700	1598	523	1513	3270;3271	7278;7279;7280	7279		3	9606
IPDWFLNR	0	1	Unmodified	1059.5502	0.55016488	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	21.502	21.502	2	1.5903E-11	15194	DP1063-5	173.93	93.714			1.8196	1.359	NaN	1	0	Median	63083000	21871000	41213000	1599	374	1514	3272	7281;7282;7283;7284	7284		4	9606
IPFTFWAR	0	1	Unmodified	1036.5494	0.54943659	678	Q9Y5V3	MAGED1	Melanoma-associated antigen D1	yes	yes	0	0	0	2	0		1				22.266	22.266	2	0.048543	15125	DP1063-2	82.305	25.203			NaN	NaN	NaN	0	0	Median	3870700	0	3870700	1600	678	1515	3273	7285	7285		1	9606
IPGGIIEDSCVLR	0	1	Unmodified	1427.7442	0.74424959	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			19.809	19.809	2	0.00072385	13400	DP1063-3	126.39	85.27			3.8514	2.8779	NaN	1	0	Median	31277000	5666800	25610000	1601	304	1516	3274	7286;7287;7288;7289	7287		4	9606
IPGLLSPHPLLQLSYTATDR	0	1	Unmodified	2191.2001	0.20010338	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					21.881	21.881	3	3.2198E-05	12631	DP1063-1	128.1	128.1			2.1416	1.7172	NaN	1	0	Median	4910900	1707400	3203400	1602	303	1517	3275	7290	7290		1	9606
IPLLSDLTHQISK	1	0	Unmodified	1463.8348	0.83477916	462	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					1	20.689	20.689	3	0.00011798	14248	DP1063-5	141.13	123.46			1.6611	1.4061	NaN	1	0	Median	29242000	10374000	18868000	1603	462	1518	3276	7291;7292;7293;7294	7292		4	9606
IPLSQEEITLQGHAFEAR	0	1	Unmodified	2038.0484	0.048353761	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.6	0.952		10	2	2	1	21.454	21.454	2;3	2.2194E-105	12738	DP1063-3	330.35	330.35			1.3792	1.1919	12.049	7	0	Median	1590299999.9999998	674280000	915990000	1604	595	1519	3277;3278;3279;3280;3281;3282;3283;3284;3285;3286;3287;3288;3289;3290;3291	7295;7296;7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312;7313;7314;7315;7316;7317;7318;7319;7320;7321;7322;7323;7324;7325;7326;7327;7328;7329;7330;7331;7332	7320		38	9606
IPPNVEK	1	0	Unmodified	795.44905	0.44905385	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				13.522	13.522	2	0.011561	2764	DP1063-1	124.34	46.969			183.78	165.13	NaN	1	0	Median	85251000	484290	84766000	1605	460	1520	3292;3293;3294	7333;7334;7335;7336	7334		4	9606
IPQAIAQLSK	1	0	Unmodified	1067.6339	0.63389451	521	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	4	0				1		17.94	17.94	2	0.038893	10434	DP1063-4	64.841	28.08			1.0886	0.75352	NaN	1	0	Median	4507000	2458500	2048500	1606	521	1521	3295	7337	7337		1	9606
IPSAVGYQPTLATDMGTMQER	0	1	2 Oxidation (M)	2297.0668	0.066782296	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	2	0	3	0			1			18.301	18.301	2	5.5788E-05	11365	DP1063-3	128.85	86.85			NaN	NaN	NaN	0	0	Median	7998000	0	7998000	1607	121	1522	3296	7338;7339	7338	108;109	2	9606
IPVQAVWAGWGHASENPK	1	0	Unmodified	1945.9799	0.97988027	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	2.17	1.07	2	2	1	1		19.921	19.921	2;3	1.4695E-24	10263	DP1063-1	211.49	211.49			1.1433	0.98105	18.21	6	0	Median	455190000	207230000	247970000	1608	43;460	1523	3297;3298;3299;3300;3301;3302	7340;7341;7342;7343;7344;7345;7346;7347;7348;7349;7350;7351;7352;7353;7354;7355;7356	7343		17	9606
IPWFQYPIIYDIR	0	1	Unmodified	1722.9134	0.91336383	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		24.981	24.981	2	8.845E-14	19150	DP1063-4	206.97	165.57			1.3529	0.87082	NaN	1	0	Median	13029000	5074800	7954200	1609	598	1524	3303	7357;7358;7359;7360;7361	7359		5	9606
IQAEFEKK	2	0	Unmodified	991.53385	0.53384611	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			1			13.602	13.602	2	0.028943	5044	DP1063-3	56.721	30.782			1.2928	1.1599	NaN	1	0	Median	3234200	1466900	1767200	1610	456	1525	3304	7362	7362		1	9606
IQAEVEAQLAR	0	1	Unmodified	1226.6619	0.66190017	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	3	0.816		1	1	1		17.037	17.037	2	4.9982E-05	8063	DP1063-2	139.98	65.515			NaN	NaN	NaN	0	0	Median	50247000	0	50247000	1611	654	1526	3305;3306;3307	7363;7364;7365;7366	7363		4	9606
IQDKEGIPPDQQR	1	1	Unmodified	1522.774	0.77396981	403	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	2.5	1.5	1	2			1	14.106	14.106	2;3	0.0069241	5439	DP1063-5	78.964	78.964			2.542	2.3702	46.92	3	0	Median	30638000	7247900	23390000	1612	403	1527	3308;3309;3310;3311	7367;7368;7369;7370;7371	7371		5	9606
IQDWYDKK	2	0	Unmodified	1094.5397	0.53965977	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			15.516	15.516	2	0.018397	7478	DP1063-3	98.458	33.701		+	NaN	NaN	NaN	0	0	Median	44498000	44498000	0	1613	251	1528	3312	7372;7373	7372		2	9606
IQEAGTEVVK	1	0	Unmodified	1072.5764	0.57643921	270	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		14.574	14.574	2	0.0092669	6018	DP1063-4	86.136	23.418			2.141	1.4819	NaN	1	0	Median	8304300	2530500	5773800	1614	270	1529	3313	7374;7375	7375		2	9606
IQEGVESLAGYADIFLR	0	1	Unmodified	1879.968	0.96797818	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.83	0.687			2	3	1	24.673	24.673	2;3	2.4307E-25	18825	DP1063-4	234.83	152.91			1.7345	1.2751	13.701	4	0	Linear	86453000	34362000	52091000	1615	111	1530	3314;3315;3316;3317;3318;3319	7376;7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389	7387		14	9606
IQEQESSGEEDSDLSPEER	0	1	Unmodified	2162.9087	0.90874455	273	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	0	4	0				1		15.902	15.902	2	3.5435E-26	7802	DP1063-4	207.31	172.11			NaN	NaN	NaN	0	0	Median	0	0	0	1616	273	1531	3320	7390	7390		1	9606
IQEQVQQTLAR	0	1	Unmodified	1312.7099	0.709913	603	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	2	0		2				15.914	15.914	2	0.006354	6610	DP1063-2	97.456	27.858			NaN	NaN	NaN	0	0	Median	4205900	0	4205900	1617	603	1532	3321;3322	7391;7392;7393	7391		3	9606
IQESHPELRR	0	2	Unmodified	1263.6684	0.66838253	622	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	1	4	0				1		13.021	13.021	3	0.043605	4233	DP1063-4	64.04	24.103			NaN	NaN	NaN	0	0	Median	0	0	0	1618	622	1533	3323	7394	7394		1	9606
IQETQAELPR	0	1	Unmodified	1183.6197	0.619701	489	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	2	0		1				15.826	15.826	2	0.0040476	6555	DP1063-2	103.55	29.245			NaN	NaN	NaN	0	0	Median	7324000	0	7324000	1619	489	1534	3324	7395;7396	7396		2	9606
IQEVADELQK	1	0	Unmodified	1171.6085	0.60846762	181	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	5	0					1	16.276	16.276	2	0.0016129	8661	DP1063-5	119.75	34.831			NaN	NaN	NaN	0	0	Median	6162100	0	6162100	1620	181	1535	3325	7397;7398	7397		2	9606
IQGLTVEQAEAVVR	0	1	Unmodified	1511.8308	0.83075641	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					19.724	19.724	2	0.00084167	10006	DP1063-1	152.7	92.632			1.5347	1.2208	NaN	1	0	Median	5799900	2402600	3397300	1621	487	1536	3326	7399;7400	7400		2	9606
IQLVEEELDRAQER	0	2	Unmodified	1726.885	0.88497683	25	CON__Q3SX28;P67936;P09493;P07951;P06753	TPM4;TPM1;TPM2;TPM3	Tropomyosin alpha-4 chain;Tropomyosin alpha-1 chain;Tropomyosin beta chain;Tropomyosin alpha-3 chain	yes	no	0	0	1	4	0				1		18.498	18.498	3	0.0016012	11141	DP1063-4	95.273	67.63		+	1.9615	1.7588	NaN	1	0	Median	12845000	3925300	8920100	1622	25	1537	3327	7401;7402	7401		2	9606
IQNGAQGIR	0	1	Unmodified	955.51993	0.51992738	237	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			2			13.442	13.442	2	0.015284	4853	DP1063-3	138.9	58.457			NaN	NaN	NaN	0	0	Median	0	0	0	1623	237	1538	3328;3329	7403;7404	7404		2	9606
IQPGSQQADFLDALIVSMDVIQHETIGK	1	0	Oxidation (M)	3068.5489	0.54885083	164	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	0	2	0		1				24.899	24.899	3	1.0789E-05	18407	DP1063-2	69.248	52.032			1.0093	0.84443	NaN	1	0	Median	4648600	1880800	2767800	1624	164	1539	3330	7405;7406;7407	7406	203	3	9606
IQQNTFTR	0	1	Unmodified	1006.5196	0.51959303	190;70	P21333;Q14315;O75369	FLNA;FLNC;FLNB	Filamin-A;Filamin-C;Filamin-B	no	no	0	0	0	2	0		1				14.625	14.625	2	0.0071469	4892	DP1063-2	110.81	39.895			NaN	NaN	NaN	0	0	Median	9875100	0	9875100	1625	190;70	1540	3331	7408;7409	7409		2	9606
IQSTALR	0	1	Unmodified	787.4552	0.45520186	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					13.873	13.873	2	0.00024872	3295	DP1063-1	163.34	55.597			NaN	NaN	NaN	0	0	Median	0	0	0	1626	460	1541	3332;3333	7410;7411	7411		2	9606
IQSTALRGEK	1	1	Unmodified	1101.6142	0.6142217	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	3					13.028	13.028	2;3	1.0885E-06	2337	DP1063-1	155.58	64.984			1.4168	1.3211	NaN	1	0	Median	24549000	10155000	14394000	1627	460	1542	3334;3335;3336	7412;7413;7414;7415;7416;7417;7418	7414		7	9606
IQTQPGYANTLR	0	1	Unmodified	1360.7099	0.709913	426	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		16.326	16.326	2	0.00034142	8308	DP1063-4	148.56	89.49			1.7572	1.3565	18.744	2	0	Median	56560000	20657000	35903000	1628	426	1543	3337;3338	7419;7420;7421;7422;7423;7424;7425;7426	7425		8	9606
IQVRLGEHNIDVLEGNEQFINAAK	1	1	Unmodified	2706.4089	0.40892695	10	CON__P00761			yes	yes	0	0	1	3.27	1.21	1	2	3	3	2	20.266	20.266	2;3;4	3.9845000000000003E-29	13538	DP1063-4	152.68	131.43		+	NaN	NaN	NaN	0	0	Median	250410000	250410000	0	1629	10	1544	3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349	7427;7428;7429;7430;7431;7432;7433;7434;7435;7436;7437;7438;7439;7440;7441;7442;7443;7444;7445;7446;7447	7443		21	
IQVWHEEHR	0	1	Unmodified	1232.6051	0.60505399	212	P26038	MSN	Moesin	yes	yes	0	0	0	3	0			1			14.362	14.362	3	0.0084079	5917	DP1063-3	87.149	51.241			NaN	NaN	NaN	0	0	Median	14939000	0	14939000	1630	212	1545	3350	7448;7449	7448		2	9606
IREEYPDR	0	2	Unmodified	1076.5251	0.52507234	414;129;480	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;Q9BVA1;Q13885	TUBB;TUBB1;TUBB4B;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	1	3.33	0.471			2	1		13.484	13.484	2;3	0.0024356	4863	DP1063-3	120.15	120.15			2.1053	1.9249	13.925	3	0	Median	125870000	40100000	85772000	1631	129;414;480	1546	3351;3352;3353	7450;7451;7452;7453;7454;7455;7456;7457;7458	7454		9	9606
IRELTAVVQK	1	1	Unmodified	1155.6976	0.69755739	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		15.481	15.481	2	0.020914	7206	DP1063-4	68.893	12.083			2.1268	2.0678	NaN	1	0	Median	13952000	4325700	9626400	1632	200	1547	3354	7459	7459		1	9606
IRLENEIQTYR	0	2	Unmodified	1433.7627	0.76267685	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	1.1	1		2	2		17.226	17.226	2;3	3.1264999999999996E-21	9868	DP1063-3	227.94	147.19		+	NaN	NaN	NaN	0	0	Median	171840000	171840000	0	1633	19	1548	3355;3356;3357;3358;3359	7460;7461;7462;7463;7464;7465;7466;7467;7468;7469	7465		10	9606
IRQNEINNPK	1	1	Unmodified	1224.6575	0.65748349	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				12.727	12.727	3	0.0012539	2587	DP1063-2	99.973	77.412			1.1198	1.0549	NaN	1	0	Median	17155000	8458700	8696100	1634	513	1549	3360	7470;7471;7472;7473	7473		4	9606
ISANENSLAVR	0	1	Unmodified	1172.6149	0.61494998	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	2	0		1				15.954	15.954	2	0.00049933	6653	DP1063-2	130.66	42.959			NaN	NaN	NaN	0	0	Median	12750000	0	12750000	1635	644	1550	3361	7474;7475	7475		2	9606
ISEQFTAMFR	0	1	Oxidation (M)	1244.586	0.58595803	414;129;480;471	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		18.658	18.658	2	0.00040965	11416	DP1063-4	116.37	92.603			1.8221	1.4441	16.798	2	0	Median	221730000	72236000	149490000	1636	129;414;480;471	1551	3362;3363	7476;7477;7478;7479;7480;7481	7478	125	6	9606
ISEQFTAMFR	0	1	Unmodified	1228.591	0.59104341	414;129;480;471	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		20.666	20.666	2	4.1521E-08	14597	DP1063-3	175.51	109.44			2.5645	1.7906	12.542	2	0	Median	69302000	19414000	49888000	1637	129;414;480;471	1551	3364;3365	7482;7483;7484;7485;7486	7483		5	9606
ISGLIYEETR	0	1	Unmodified	1179.6136	0.61355299	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	4.93	0.258				1	13	19.249	19.249	2	0.012783	10835	DP1063-4	93.143	47.808			NaN	NaN	NaN	0	0	Median	4568900	0	4568900	1638	386	1552	3366;3367;3368;3369;3370;3371;3372;3373;3374;3375;3376;3377;3378;3379	7487;7488;7489;7490;7491;7492;7493;7494;7495;7496;7497;7498;7499;7500	7487		14	9606
ISISTSGGSFR	0	1	Unmodified	1110.5669	0.56693715	20	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	2.67	1.25	1		1	1		17.379	17.379	2	6.0023E-05	10037	DP1063-3	138.08	79.85		+	NaN	NaN	NaN	0	0	Median	27186000	27186000	0	1639	20	1553	3380;3381;3382	7501;7502;7503;7504	7503		4	9606
ISLGLPVGAVINCADNTGAK	1	0	Unmodified	1969.0303	0.030260856	388	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	21.763	21.763	2	1.9658E-24	15496	DP1063-5	214.48	214.48			2.9552	2.5016	NaN	1	0	Median	44214000	12254000	31960000	1640	388	1554	3383	7505;7506	7506		2	9606
ISLLLDPGSFVESDMFVEHR	0	1	Oxidation (M)	2306.1253	0.12528345	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.745			5		1	23.038	23.038	2;3	1.5954E-07	17674	DP1063-3	165.86	142.98			1.3199	1.0448	10.138	3	0	Median	278870000	120550000	158320000	1641	111	1555	3384;3385;3386;3387;3388;3389	7507;7508;7509;7510;7511;7512;7513;7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525	7517	101	19	9606
ISLLLDPGSFVESDMFVEHR	0	1	Unmodified	2290.1304	0.13036883	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			24.077	24.077	3	5.5199E-05	18943	DP1063-3	163.45	124.75			NaN	NaN	NaN	0	0	Median	12497000	12497000	0	1642	111	1555	3390	7526;7527	7527		2	9606
ISLPLPNFSSLNLR	0	1	Unmodified	1569.8879	0.88787736	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3.5	0.5			1	1		23.661	23.661	2	3.3782E-05	18322	DP1063-3	165.63	165.63			3.5276	2.5749	24.242	2	0	Median	15405000	3397100	12008000	1643	136	1556	3391;3392	7528;7529;7530;7531;7532;7533;7534	7529		7	9606
ISSIQSIVPALEIANAHR	0	1	Unmodified	1918.0636	0.063609895	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			2			21.292	21.292	2;3	5.0334E-17	15372	DP1063-3	193.31	193.31			2.0086	1.4808	16.654	2	0	Median	43071000	13429000	29641000	1644	151	1557	3393;3394	7535;7536;7537;7538	7536		4	9606
ISSLLEEQFQQGK	1	0	Unmodified	1505.7726	0.77257283	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.386	19.386	2	0.00067177	12590	DP1063-5	114.4	60.908			NaN	NaN	NaN	0	0	Median	0	0	0	1645	368	1558	3395	7539	7539		1	9606
ISSLNSVHCK	1	0	Unmodified	1143.5706	0.57064232	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					13.582	13.582	2	0.0095461	2975	DP1063-1	96.331	54.222			NaN	NaN	NaN	0	0	Median	467690	467690	0	1646	43	1559	3396	7540	7540		1	9606
ISTLTIEEGNLDIQRPK	1	1	Unmodified	1926.0422	0.042205751	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		18.82	18.82	3	0.00033999	11636	DP1063-4	162.64	131.53			NaN	NaN	NaN	0	0	Median	8703300	0	8703300	1647	458	1560	3397	7541;7542	7541		2	9606
ISVMGGEQAANVLATITK	1	0	Oxidation (M)	1817.9557	0.95569893	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.1	0.39			29	1	1	26.432	26.432	2;3	2.078E-44	15367	DP1063-3	247.11	224.53			1.6317	1.3102	6.2092	5	0	Median	977970000	364230000	613740000	1648	624	1561	3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413;3414;3415;3416;3417;3418;3419;3420;3421;3422;3423;3424;3425;3426;3427;3428	7543;7544;7545;7546;7547;7548;7549;7550;7551;7552;7553;7554;7555;7556;7557;7558;7559;7560;7561;7562;7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577;7578;7579;7580;7581;7582;7583;7584;7585;7586;7587;7588;7589;7590;7591;7592;7593;7594	7548	748	52	9606
ISVMGGEQAANVLATITK	1	0	Unmodified	1801.9608	0.96078431	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			22.448	22.448	2	2.0633E-11	16867	DP1063-3	191.19	191.19			1.8543	1.489	NaN	1	0	Median	249220000	86109000	163110000	1649	624	1561	3429	7595;7596;7597;7598	7596		4	9606
ISVYYNEATGGK	1	0	Unmodified	1300.6299	0.62993134	129	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		16.944	16.944	2	1.6727E-13	9434	DP1063-3	202.44	146.01			2.4186	1.8032	0.17311	2	0	Median	198690000	54944000	143750000	1650	129	1562	3430;3431	7599;7600;7601;7602;7603;7604;7605;7606;7607	7601		9	9606
ITDIIGK	1	0	Unmodified	758.4538	0.45380487	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.334	16.334	2	0.04321	6050	DP1063-1	92.467	29.319			NaN	NaN	NaN	0	0	Median	0	0	0	1651	460	1563	3432	7608	7608		1	9606
ITDIIGKEEGIGPENLR	1	1	Unmodified	1852.9894	0.9894419	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.764	8	2	2			19.433	19.433	2;3	1.4878000000000002E-84	8882	DP1063-1	293.53	293.53			1.1519	1.074	7.3679	5	0	Median	847150000	388760000	458390000	1652	460	1564	3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444	7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639;7640	7619		32	9606
ITENIGCVMTGMTADSR	0	1	2 Oxidation (M)	1886.8172	0.81723289	352	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	2	0	5	0					1	16.507	16.507	2	0.0029595	8868	DP1063-5	95.854	66.609			NaN	NaN	NaN	0	0	Median	0	0	0	1653	352	1565	3445	7641	7641	449;450	1	9606
ITESEEVVSR	0	1	Unmodified	1147.5721	0.57208211	97	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	3	0			1			14.942	14.942	2	0.00011753	6739	DP1063-3	128.36	89.108			1.8299	1.3323	NaN	1	0	Median	13247000	4399500	8847100	1654	97	1566	3446	7642;7643	7643		2	9606
ITFHGEGDQEPGLEPGDIIIVLDQK	1	0	Unmodified	2719.3705	0.37047576	236	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				3		22.658	22.658	3	0.0090099	16508	DP1063-4	46.862	34.8			1.7993	1.2454	NaN	1	0	Median	5606900	2294700	3312200	1655	236	1567	3447;3448;3449	7644;7645;7646;7647	7644		4	9606
ITGEAFVQFASQELAEK	1	0	Unmodified	1866.9363	0.9363437	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		23.237	23.237	2	7.2756E-22	17192	DP1063-4	219.97	171.86			1.8725	1.2961	NaN	1	0	Median	20624000	6194300	14429000	1656	327	1568	3450	7648;7649;7650;7651	7651		4	9606
ITGMLLEIDNSELLHMLESPESLR	0	1	2 Oxidation (M)	2771.3721	0.37213202	156	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	2	0	3	0			1			23.017	23.017	3	0.022728	17659	DP1063-3	59.539	20.814			NaN	NaN	NaN	0	0	Median	6283700	0	6283700	1657	156	1569	3451	7652	7652	193;194	1	9606
ITITNDQNR	0	1	Unmodified	1073.5465	0.54653606	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			14.37	14.37	2	3.8585E-29	5968	DP1063-3	226.68	167.76			3.2809	2.4673	NaN	1	0	Median	33976000	8023900	25952000	1658	152	1570	3452	7653;7654	7653		2	9606
ITKPGSIDSNNQLFAPGGR	1	1	Unmodified	1971.0174	0.017387984	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	1	0	1					17.513	17.513	3	0.011136	7243	DP1063-1	83.404	59.038			NaN	NaN	NaN	0	0	Median	6845700	0	6845700	1659	442	1571	3453	7655	7655		1	9606
ITLIIGGSYGAGNYGMCGR	0	1	Oxidation (M)	1974.9292	0.9291666	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.411	20.411	2	2.8797E-11	14223	DP1063-3	184.96	184.96			1.5481	1.3151	NaN	1	0	Median	165230000	64826000	100400000	1660	624	1572	3454	7656;7657;7658;7659	7658	749	4	9606
ITLIIGGSYGAGNYGMCGR	0	1	Unmodified	1958.9343	0.93425198	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.67	0.471			1	2		21.179	21.179	2	3.2178E-45	15253	DP1063-3	253.42	210.79			1.6027	1.2436	NaN	1	0	Median	50988000	18506000	32482000	1661	624	1572	3455;3456;3457	7660;7661;7662;7663;7664;7665	7661		6	9606
ITLPVDFVTADKFDENAK	2	0	Unmodified	2022.031	0.030972363	95	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	4	0				1		21.359	21.359	3	0.0039748	14955	DP1063-4	99.044	62.851			NaN	NaN	NaN	0	0	Median	4777500	0	4777500	1662	95	1573	3458	7666;7667	7666		2	9606
ITPAHDQNDYEVGQR	0	1	Unmodified	1741.802	0.80197548	217	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	2	0		1				14.64	14.64	3	0.00041541	4968	DP1063-2	104.17	82.349			2.046	1.4948	NaN	1	0	Median	10448000	3555800	6891900	1663	217	1574	3459	7668;7669;7670	7670		3	9606
ITPPAAKPGSPQAK	2	0	Unmodified	1361.7667	0.76669959	256	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	1	1	0	1					13.52	13.52	3	0.02244	2898	DP1063-1	58.831	44.145			1.4604	1.4677	NaN	1	0	Median	1525500	556380	969130	1664	256	1575	3460	7671	7671		1	9606
ITPSYVAFTPEGER	0	1	Unmodified	1565.7726	0.77257283	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			19.263	19.263	2	0.0022556	12657	DP1063-3	134.13	111.21			3.0514	2.3219	NaN	1	0	Median	39587000	9423100	30164000	1665	152	1576	3461	7672;7673;7674;7675;7676	7674		5	9606
ITSAVWGPLGECIIAGHESGELNQYSAK	1	0	Unmodified	2986.4495	0.44947114	469	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				2		21.693	21.693	3	0.000266	15335	DP1063-4	95.209	67.646			NaN	NaN	NaN	0	0	Median	3210000	0	3210000	1666	469	1577	3462;3463	7677;7678	7678		2	9606
ITSCIFQLLQEAGIK	1	0	Unmodified	1719.9229	0.92294224	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	4	0				2		24.804	24.804	2	0.00038965	18985	DP1063-4	140.78	84.694			NaN	NaN	NaN	0	0	Median	2596100	0	2596100	1667	194	1578	3464;3465	7679;7680;7681	7679		3	9606
ITSEALLVTQQLVK	1	0	Unmodified	1541.9029	0.90285872	548	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				21.118	21.118	2	0.0017322	13624	DP1063-2	108.98	76.254			2.4904	2.0835	NaN	1	0	Median	12308000	4069200	8238500	1668	548	1579	3466	7682;7683	7682		2	9606
ITSEMGSASQANIR	0	1	Oxidation (M)	1479.6988	0.69875596	618	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	1	0	1	0	1					14.34	14.34	2	0.0068069	3794	DP1063-1	99.343	56.046			NaN	NaN	NaN	0	0	Median	767960	0	767960	1669	618	1580	3467	7684;7685	7685	742	2	9606
ITSENPDEGFKPSSGTVQELNFR	1	1	Unmodified	2551.2191	0.2190605	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	1	1.26	0.699	23	2	1	1		25.067	25.067	2;3;4	1.659E-115	8952	DP1063-1	323.02	306.92			1.0539	0.99279	17.057	13	0	Median	2138499999.9999998	993840000	1144700000	1670	43;460	1581	3468;3469;3470;3471;3472;3473;3474;3475;3476;3477;3478;3479;3480;3481;3482;3483;3484;3485;3486;3487;3488;3489;3490;3491;3492;3493;3494	7686;7687;7688;7689;7690;7691;7692;7693;7694;7695;7696;7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715;7716;7717;7718;7719;7720;7721;7722;7723;7724;7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761;7762;7763;7764;7765;7766;7767;7768	7701		83	9606
ITTGSSSAGTQSSTSNR	0	1	Unmodified	1640.7602	0.76017024	49	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	2	0		1				12.73	12.73	2	0.00057725	2622	DP1063-2	123.95	89.447			NaN	NaN	NaN	0	0	Median	1491100	0	1491100	1671	49	1582	3495	7769	7769		1	9606
ITVLEALR	0	1	Unmodified	913.55967	0.55966693	634	Q9NVI7;Q5T9A4;Q5T2N8	ATAD3A;ATAD3B;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			19.974	19.974	2	0.015643	13666	DP1063-3	101.28	44.003			2.0496	1.5222	NaN	1	0	Median	28899000	8480400	20419000	1672	634	1583	3496	7770	7770		1	9606
ITVVGVGQVGMACAISILGK	1	0	Oxidation (M)	1988.0799	0.079853586	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	1	0	4	0				1		22.255	22.255	2	0.00025076	16001	DP1063-4	132.51	79.954			NaN	NaN	NaN	0	0	Median	4859100	0	4859100	1673	127	1584	3497	7771;7772	7771	120	2	9606
IVADKDYSVTANSK	2	0	Unmodified	1509.7675	0.76748745	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	4	0				2		14.635	14.635	2;3	0.00057433	6081	DP1063-4	143.98	110.97			2.4821	2.5777	NaN	1	0	Median	24239000	4977400	19261000	1674	127	1585	3498;3499	7773;7774;7775;7776;7777;7778;7779	7773		7	9606
IVAERPGTNSTGPAPMAPPR	0	2	Oxidation (M)	2034.0317	0.031657839	466	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	1	2	0		1				14.903	14.903	3	0.00017676	5249	DP1063-2	80.541	80.541			1.222	1.1379	NaN	1	0	Median	12078000	4567400	7510600	1675	466	1586	3500	7780;7781;7782;7783	7783	609	4	9606
IVALNAHTFLR	0	1	Unmodified	1253.7244	0.72444085	193	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	no	no	0	0	0	4	0				2		18.67	18.67	2;3	0.00011359	11404	DP1063-4	119.53	103.61			1.885	1.2547	4.2601	2	0	Median	35137000	10224000	24913000	1676	193	1587	3501;3502	7784;7785;7786;7787	7784		4	9606
IVALSSSLSNAK	1	0	Unmodified	1188.6714	0.67140222	76	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.371	17.371	2	0.012439	7121	DP1063-1	82.749	66.276			2.733	2.1339	NaN	1	0	Median	7342800	2050300	5292500	1677	76	1588	3503	7788	7788		1	9606
IVATKPLYVALAQR	1	1	Unmodified	1541.9293	0.92934824	156	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	3	0			2			18.474	18.474	2;3	0.0006983	11562	DP1063-3	119.01	119.01			2.4536	2.2254	NaN	1	0	Median	29525000	8236000	21289000	1678	156	1589	3504;3505	7789;7790;7791	7789		3	9606
IVEANPLLEAFGNAK	1	0	Unmodified	1584.8512	0.8511575	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				22.378	22.378	2	0.00048411	15167	DP1063-2	160.86	120.92			NaN	NaN	NaN	0	0	Median	38495000	0	38495000	1679	654	1590	3506	7792;7793	7792		2	9606
IVEDEPNKICEADR	1	1	Unmodified	1686.7883	0.78829925	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	2	0		2				15.15	15.15	2;3	0.0018305	5625	DP1063-2	142.08	103.3			NaN	NaN	NaN	0	0	Median	8511100	0	8511100	1680	336	1591	3507;3508	7794;7795	7795		2	9606
IVEPPENIQEK	1	0	Unmodified	1294.6769	0.67688153	1	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1	0	1					16.171	16.171	2	0.040014	5864	DP1063-1	76.228	14.537			NaN	NaN	NaN	0	0	Median	2109800	0	2109800	1681	1	1592	3509	7796	7796		1	9606
IVEPYIAWGYPNLK	1	0	Unmodified	1661.8817	0.88172935	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		22.336	22.336	2	0.0019759	16204	DP1063-4	106.4	29.472			0.98153	0.67939	NaN	1	0	Median	12423000	5969900	6453300	1682	182	1593	3510	7797;7798	7798		2	9606
IVEYEKEMEK	2	0	Oxidation (M)	1312.6221	0.62206877	78	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	1	1	5	0					1	13.423	13.423	3	0.0093471	5172	DP1063-5	60.167	60.167			1.339	1.3083	NaN	1	0	Median	3816100	1195900	2620200	1683	78	1594	3511	7799;7800	7799	59	2	9606
IVFAAGNFWGR	0	1	Unmodified	1236.6404	0.64037687	100	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	4	0				1		21.858	21.858	2	0.00078033	15539	DP1063-4	118.74	97.771			3.5112	2.356	NaN	1	0	Median	5210700	1137400	4073300	1684	100	1595	3512	7801;7802;7803;7804;7805	7801		5	9606
IVGDLAQFMVQNGLSR	0	1	Unmodified	1746.9087	0.90868916	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.18	0.716	1	8	1	1		22.894	22.894	2;3	1.0614E-68	15851	DP1063-2	286.34	286.34			1.4265	1.067	31.201	5	0	Median	312940000	127790000	185140000	1685	154	1596	3513;3514;3515;3516;3517;3518;3519;3520;3521;3522;3523	7806;7807;7808;7809;7810;7811;7812;7813;7814;7815;7816;7817;7818;7819;7820;7821;7822;7823;7824;7825;7826;7827;7828;7829;7830	7808		25	9606
IVGDLAQFMVQNGLSR	0	1	Oxidation (M)	1762.9036	0.90360378	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.4	0.8		4		1		21.771	21.771	2;3	0.00019598	13074	DP1063-2	101.05	101.05			1.4637	1.1816	24.384	4	0	Median	399530000	165440000	234100000	1686	154	1596	3524;3525;3526;3527;3528	7831;7832;7833;7834;7835;7836;7837;7838;7839;7840;7841;7842;7843;7844;7845;7846	7837	185	16	9606
IVGPSGAAVPCK	1	0	Unmodified	1154.6118	0.61177885	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	2	2				27.77	27.77	2	0.010192	21795	DP1063-2	90.657	16.28			NaN	NaN	NaN	0	0	Median	2008800	0	2008800	1687	190	1597	3529;3530;3531;3532	7847;7848;7849;7850	7850		4	9606
IVGPSGAAVPCKVEPGLGADNSVVR	1	1	Unmodified	2448.2795	0.27949268	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					18.114	18.114	3	4.3829E-05	7935	DP1063-1	113.7	88.792			NaN	NaN	NaN	0	0	Median	7102500	0	7102500	1688	190	1598	3533	7851;7852	7851		2	9606
IVIGYQSHADTATK	1	0	Unmodified	1502.7729	0.77290718	122	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	5	0					1	15.363	15.363	3	0.00079346	7558	DP1063-5	92.151	92.151			1.6802	1.4223	NaN	1	0	Median	9186500	2170500	7016000	1689	122	1599	3534	7853	7853		1	9606
IVLDNSVFSEHR	0	1	Unmodified	1414.7205	0.72047768	428	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1	0	1					18.362	18.362	3	0.00018998	8327	DP1063-1	91.961	56.316			1.408	1.1138	NaN	1	0	Median	11647000	4122800	7524400	1690	428	1600	3535	7854;7855	7854		2	9606
IVLLDSSLEYK	1	0	Unmodified	1278.7071	0.70711903	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			20.516	20.516	2	0.0033628	14368	DP1063-3	98.249	76.163			4.2179	3.3869	NaN	1	0	Median	37639000	7545100	30094000	1691	304	1601	3536	7856;7857;7858;7859	7856		4	9606
IVPNVLLEQGK	1	0	Unmodified	1208.7129	0.71287311	71	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	4	0				1		18.977	18.977	2	0.00063097	11831	DP1063-4	120.99	120.99			2.2498	1.5573	NaN	1	0	Median	10183000	2946900	7236000	1692	71	1602	3537	7860;7861;7862;7863	7862		4	9606
IVQAEGEAEAAK	1	0	Unmodified	1214.6143	0.61428128	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		14.09	14.09	2	0.0004495	5385	DP1063-4	140.45	102.97			1.7696	1.2249	NaN	1	0	Median	18570000	6594900	11975000	1693	598	1603	3538	7864;7865;7866;7867	7866		4	9606
IVQMTEAEVR	0	1	Oxidation (M)	1190.5965	0.59652272	366	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	1	0	4	0				1		14.318	14.318	2	0.017651	5669	DP1063-4	93.649	36.059			NaN	NaN	NaN	0	0	Median	4513700	0	4513700	1694	366	1604	3539	7868;7869	7868	460	2	9606
IVSRPEELREDDVGTGAGLLEIK	1	2	Unmodified	2495.3231	0.32313164	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	2	3	0			1			19.072	19.072	3	0.00029853	12358	DP1063-3	78.456	78.456			1.7861	1.9731	NaN	1	0	Median	45105000	19502000	25603000	1695	304	1605	3540	7870;7871;7872	7870		3	9606
IVTVVPQDTK	1	0	Unmodified	1098.6285	0.62847478	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				16.144	16.144	2	0.045813	6893	DP1063-2	78.264	27.657			NaN	NaN	NaN	0	0	Median	11381000	0	11381000	1696	82	1606	3541	7873	7873		1	9606
IVVNLTGR	0	1	Unmodified	870.5287	0.52870115	369	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	17.358	17.358	2	0.0084555	9900	DP1063-5	107.59	35.879			NaN	NaN	NaN	0	0	Median	43255000	0	43255000	1697	369	1607	3542	7874;7875	7875		2	9606
IVVVTAGVR	0	1	Unmodified	912.57565	0.57565135	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		16.615	16.615	2	0.0076602	8613	DP1063-4	98.458	55.544			2.488	1.947	NaN	1	0	Median	60180000	17898000	42282000	1698	127	1608	3543	7876;7877;7878;7879	7877		4	9606
IVYLYTK	1	0	Unmodified	898.51641	0.51640513	302	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	17.454	17.454	2	0.027452	10044	DP1063-5	105.2	42.862			2.3903	2.0234	NaN	1	0	Median	24658000	8061900	16596000	1699	302	1609	3544	7880	7880		1	9606
IWHHTFYNELR	0	1	Unmodified	1514.7419	0.74188183	349;409;411	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261;P68133;P68032	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1;ACTA1;ACTC1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	no	no	0	0	0	4	0				2		16.929	16.929	2;3	1.0485E-07	9043	DP1063-4	157.75	157.75			3.0149	2.3673	12.901	2	0	Median	178840000	47441000	131400000	1700	349;409;411	1610	3545;3546	7881;7882;7883;7884;7885;7886;7887;7888;7889	7887		9	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Oxidation (M)	2640.3006	0.30062206	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.83	0.687		2	3	1		20.523	20.523	2;3	2.4888E-08	14364	DP1063-3	137.64	137.64			1.0235	0.92526	22.324	4	0	Linear	526490000	245420000	281070000	1701	595	1611	3547;3548;3549;3550;3551;3552	7890;7891;7892;7893;7894;7895;7896;7897;7898;7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909	7904	715	20	9606
IYAEDPSNNFMPVAGPLVHLSTPR	0	1	Unmodified	2624.3057	0.30570743	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.67	0.471		1	2			21.628	21.628	3	1.3104E-08	14277	DP1063-2	143.74	143.74			0.98627	0.78445	NaN	1	0	Median	138070000	68012000	70059000	1702	595	1611	3553;3554;3555	7910;7911;7912;7913;7914;7915;7916	7913		7	9606
IYGFYDECK	1	0	Unmodified	1193.5063	0.50631073	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		18.783	18.783	2	0.00059254	11963	DP1063-3	130.22	106.02			NaN	NaN	NaN	0	0	Median	191540000	0	191540000	1703	260;365;366	1612	3556;3557	7917;7918;7919;7920	7917		4	9606
IYGFYDECKR	1	1	Unmodified	1349.6074	0.60742176	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			1	1		17.224	17.224	3	8.4911E-05	9840	DP1063-3	137.05	112.58			NaN	NaN	NaN	0	0	Median	109020000	0	109020000	1704	260;365;366	1613	3558;3559	7921;7922;7923;7924	7921		4	9606
IYGLGSLALYEK	1	0	Unmodified	1325.7231	0.72310344	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		21.555	21.555	2	0.00051439	15135	DP1063-4	132.25	74.02			1.4431	0.99891	NaN	1	0	Median	12427000	4740200	7686600	1705	258	1614	3560	7925;7926;7927	7925		3	9606
IYIDSNNNPER	0	1	Unmodified	1333.6262	0.62624295	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					15.785	15.785	2	1.53E-05	5398	DP1063-1	138.98	102.21			1.6818	1.3342	NaN	1	0	Median	6138300	2101400	4036900	1706	428	1615	3561	7928;7929;7930	7928		3	9606
IYLTADNLVLNLQDESFTR	0	1	Unmodified	2224.1376	0.1375627	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		23.727	23.727	2	3.7457E-18	17757	DP1063-4	198.29	148.81			NaN	NaN	NaN	0	0	Median	0	0	0	1707	598	1616	3562	7931	7931		1	9606
IYVAANSGAR	0	1	Unmodified	1020.5352	0.53524309	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.416	14.416	2	0.0024419	3862	DP1063-1	104.06	79.835			1.2914	1.0059	NaN	1	0	Median	9355300	3965600	5389700	1708	43	1617	3563	7932;7933	7933		2	9606
IYVSANSGAR	0	1	Unmodified	1036.5302	0.53015772	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	0.829	2	1	1			15	15	2	8.819E-10	4636	DP1063-2	179.21	143.85			1.3454	1.427	21.187	4	0	Linear	976950000	411940000	565010000	1709	460	1618	3564;3565;3566;3567	7934;7935;7936;7937;7938;7939;7940;7941;7942;7943;7944;7945;7946;7947	7943		14	9606
KAEAGAGSATEFQFR	1	1	Unmodified	1568.7583	0.75831975	293	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	1	5	0					3	16.564	16.564	2;3	0.00038355	8948	DP1063-5	149.69	119.3			1.6456	1.403	NaN	1	0	Median	16522000	5853900	10668000	1710	293	1619	3568;3569;3570	7948;7949;7950;7951;7952	7952		5	9606
KAEVNTIPGFDGVVK	2	0	Unmodified	1572.8512	0.8511575	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.67	0.471		1	2			18.277	18.277	2;3	6.4367E-06	11273	DP1063-3	206.45	168.45			1.3104	1.1758	1.3683	2	0	Median	111840000	50317000	61527000	1711	110	1620	3571;3572;3573	7953;7954;7955;7956;7957;7958;7959;7960;7961	7956		9	9606
KAEVNTIPGFDGVVKDAEEAVR	2	1	Unmodified	2343.207	0.20703925	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	3	0			1			20.777	20.777	4	2.4287E-07	14698	DP1063-3	136.81	112.02			1.3633	1.3653	NaN	1	0	Median	45905000	20717000	25188000	1712	110	1621	3574	7962;7963;7964	7963		3	9606
KALAAAGYDVEK	2	0	Unmodified	1234.6558	0.65575216	175	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	1	4	0				2		14.87	14.87	2;3	0.00042998	6438	DP1063-4	119.74	62.828			1.6157	1.678	2.2509	2	0	Median	11108000	3672100	7436100	1713	175	1622	3575;3576	7965;7966;7967	7967		3	9606
KANNSQEPSPQLASSVASTR	1	1	Unmodified	2071.0294	0.029409233	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	1	3	0			1			15.619	15.619	3	0.0029893	7637	DP1063-3	86.189	47.772			NaN	NaN	NaN	0	0	Median	5313700	0	5313700	1714	582	1623	3577	7968;7969	7969		2	9606
KAYGGAYDVMSSK	2	0	Oxidation (M)	1391.6391	0.63911582	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3.67	0.943			2		1	14.036	14.036	2;3	1.0482E-05	5570	DP1063-3	171.49	171.49			1.2227	1.1448	10.081	2	0	Median	87420000	16183000	71237000	1715	111	1624	3578;3579;3580	7970;7971;7972;7973;7974;7975;7976	7973	95	7	9606
KAYGGAYDVMSSK	2	0	Unmodified	1375.6442	0.6442012	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			15.783	15.783	3	0.0032577	7890	DP1063-3	71.879	55.938			1.5598	1.3995	NaN	1	0	Median	24853000	9229600	15624000	1716	111	1624	3581	7977;7978;7979;7980	7977		4	9606
KAYVEANQMLGDLIK	2	0	Oxidation (M)	1707.8866	0.88655673	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		2				18.285	18.285	2;3	0.00034194	9715	DP1063-2	108.34	108.34			1.4243	1.3606	4.0972	2	0	Median	116400000	47524000	68878000	1717	154	1625	3582;3583	7981;7982;7983;7984;7985;7986;7987	7982	173	7	9606
KAYVEANQMLGDLIK	2	0	Unmodified	1691.8916	0.89164211	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				20.202	20.202	2;3	0.00025415	12413	DP1063-2	170.26	105.53			1.2888	1.2311	NaN	1	0	Median	26966000	7706100	19260000	1718	154	1625	3584;3585	7988;7989;7990;7991;7992;7993;7994	7993		7	9606
KDDEVQVVR	1	1	Unmodified	1086.5669	0.56693715	356	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	1	5	0					1	13.607	13.607	2	2.1466E-05	5420	DP1063-5	134.77	83.238			1.7988	1.5336	NaN	1	0	Median	8166400	2503000	5663500	1719	356	1626	3586	7995;7996	7995		2	9606
KDDPTLLSSGR	1	1	Unmodified	1187.6146	0.61461563	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	5	0					2	14.948	14.948	2;3	0.00020594	7053	DP1063-5	115.7	62.983			0.84342	0.71906	NaN	1	0	Median	32909000	12296000	20613000	1720	192	1627	3587;3588	7997;7998;7999;8000;8001	7998		5	9606
KDIENQYETQITQIEHEVSSSGQEVQSSAK	2	0	Unmodified	3391.6016	0.60155092	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			20.972	20.972	3	7.461600000000001E-25	14984	DP1063-3	205.65	181.02		+	NaN	NaN	NaN	0	0	Median	14461000	14461000	0	1721	251	1628	3589	8002;8003	8003		2	9606
KDLYANTVLSGGTTMYPGIADR	1	1	Oxidation (M)	2358.1526	0.15256084	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	1	4	0				2		19.161	19.161	3	5.4084E-05	12070	DP1063-4	149	105.89			NaN	NaN	NaN	0	0	Median	23830000	6116200	17714000	1722	349;409	1629	3590;3591	8004;8005;8006	8004	438	3	9606
KDLYANTVLSGGTTMYPGIADR	1	1	Unmodified	2342.1576	0.15764621	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	4	0				1		19.964	19.964	3	1.5053E-05	13191	DP1063-4	128.38	97.601			NaN	NaN	NaN	0	0	Median	5581100	0	5581100	1723	349;409	1629	3592	8007	8007		1	9606
KEDLYLKPIQR	2	1	Unmodified	1401.798	0.79799972	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	2	0		1				15.729	15.729	3	0.02328	6431	DP1063-2	52.391	21.84			2.4066	2.4825	NaN	1	0	Median	17544000	6110200	11434000	1724	165	1630	3593	8008	8008		1	9606
KEELNAISGPNEFAEFYNR	1	1	Unmodified	2227.0546	0.054561351	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			1			20.344	20.344	2	0.016738	14133	DP1063-3	102.28	63.478			NaN	NaN	NaN	0	0	Median	0	0	0	1725	456	1631	3594	8009	8009		1	9606
KEELTLEGIR	1	1	Unmodified	1186.6558	0.65575216	350	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	4	0				1		17.228	17.228	2	0.0021932	9466	DP1063-4	83.647	64.553			2.2119	2.1505	NaN	1	0	Median	6411400	1535000	4876400	1726	350	1632	3595	8010;8011;8012	8011		3	9606
KEFSPFGTITSAK	2	0	Unmodified	1411.7347	0.73473076	156	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	1	3	0			1			18.205	18.205	3	0.004323	11201	DP1063-3	84.734	14.005			NaN	NaN	NaN	0	0	Median	8278100	0	8278100	1727	156	1633	3596	8013	8013		1	9606
KEGGLGPLNIPLLADVTR	1	1	Unmodified	1862.0625	0.062547262	241	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	1	5	0					1	22.675	22.675	3	3.8088E-05	16652	DP1063-5	83.792	73.87			1.1871	1.0121	NaN	1	0	Median	7448600	2986200	4462400	1728	241	1634	3597	8014;8015	8015		2	9606
KESYSIYVYK	2	0	Unmodified	1278.6496	0.64960415	126	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	5	0					1	16.785	16.785	2	3.5454E-07	9123	DP1063-5	152.97	113.67			1.5673	1.5314	NaN	1	0	Median	53017000	19831000	33186000	1729	126	1635	3598	8016;8017;8018;8019;8020	8016		5	9606
KESYSVYVYK	2	0	Unmodified	1264.634	0.63395408	66	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	1	5	0					1	16.126	16.126	2	2.11E-07	8440	DP1063-5	157.34	123.14			1.4003	1.3683	NaN	1	0	Median	114790000	50436000	64357000	1730	66	1636	3599	8021;8022;8023	8022		3	9606
KFEEEGNPYYSSAR	1	1	Unmodified	1675.7478	0.74781464	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.86	0.833			3	2	2	15.816	15.816	2;3	2.9086999999999998E-21	7909	DP1063-3	263.7	231.29			1.3787	1.3404	11.842	5	0	Median	913280000	358700000	554580000	1731	624	1637	3600;3601;3602;3603;3604;3605;3606	8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039	8025		16	9606
KFGDPVVQSDMK	2	0	Oxidation (M)	1365.6599	0.65985126	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			2			14.975	14.975	2	0.00017601	6744	DP1063-3	132.03	52.043			NaN	NaN	NaN	0	0	Median	14040000	0	14040000	1732	149	1638	3607;3608	8040;8041	8040	156	2	9606
KFGDPVVQSDMK	2	0	Unmodified	1349.6649	0.66493664	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			16.124	16.124	2	0.022544	8370	DP1063-3	83.397	49.191			NaN	NaN	NaN	0	0	Median	10953000	0	10953000	1733	149	1638	3609	8042	8042		1	9606
KGESQTDIEITREEDFTR	1	2	Unmodified	2153.0237	0.023655153	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	2	3	0			1			16.757	16.757	3	0.00010543	9217	DP1063-3	94.487	57.445			4.6173	5.1008	NaN	1	0	Median	32891000	5382300	27509000	1734	304	1639	3610	8043;8044	8043		2	9606
KGHAVGDIPGVR	1	1	Unmodified	1204.6677	0.66765425	373	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	1	5	0					1	14.212	14.212	3	0.031602	6135	DP1063-5	43.501	43.501			1.9479	1.6607	NaN	1	0	Median	18056000	4801500	13254000	1735	373	1640	3611	8045;8046;8047;8048	8046		4	9606
KGPEADSEWR	1	1	Unmodified	1173.5415	0.54145068	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	1	0	1					14.334	14.334	2	0.02191	3804	DP1063-1	87.258	54.417			NaN	NaN	NaN	0	0	Median	807680	0	807680	1736	483	1641	3612	8049	8049		1	9606
KGTDIMYTGTLDCWR	1	1	Oxidation (M)	1831.8233	0.82330455	108	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	1	4	0				1		18.583	18.583	3	0.00047195	11308	DP1063-4	92.952	92.952			1.491	1.4496	NaN	1	0	Median	9975800	3953000	6022800	1737	108	1642	3613	8050;8051	8050	81	2	9606
KGTHFVQLCCQR	1	1	Unmodified	1532.734	0.73403603	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		14.546	14.546	2;3	5.3389E-14	6212	DP1063-3	169.52	169.52			1.5086	1.3683	1.8687	3	0	Plateau	254210000	104200000	150010000	1738	624	1643	3614;3615;3616	8052;8053;8054;8055;8056;8057;8058;8059;8060;8061;8062;8063;8064;8065	8058		14	9606
KGVAINMVTEEDKR	2	1	Oxidation (M)	1604.8192	0.81920545	350	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	2	4	0				1		14.015	14.015	3	0.045819	5264	DP1063-4	58.116	38.438			NaN	NaN	NaN	0	0	Median	4492800	0	4492800	1739	350	1644	3617	8066	8066	445	1	9606
KHLEINPDHPIVETLR	1	1	Unmodified	1910.0374	0.037395144	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	2	0		1				16.706	16.706	3	4.1588E-05	7603	DP1063-2	159.18	136.79			2.055	1.9358	NaN	1	0	Median	24971000	7746400	17224000	1740	135	1645	3618	8067;8068;8069	8068		3	9606
KHLEINPDHSIIETLR	1	1	Unmodified	1914.0323	0.032309766	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	2	0		1				17.448	17.448	4	0.0098671	8631	DP1063-2	75.445	48.674			NaN	NaN	NaN	0	0	Median	26884000	0	26884000	1741	132	1646	3619	8070	8070		1	9606
KIAFAITAIK	2	0	Unmodified	1074.6801	0.68011642	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					1	18.315	18.315	2	0.0021932	11182	DP1063-5	83.647	23.529			1.6981	1.6592	NaN	1	0	Median	21774000	8239800	13534000	1742	374	1647	3620	8071;8072;8073;8074	8074		4	9606
KIAPYVAHNFSK	2	0	Unmodified	1373.7456	0.74557022	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.33	0.471		2	1			14.878	14.878	2;3	0.00014842	5222	DP1063-2	108.9	108.9			1.2624	1.2059	0.14023	2	0	Median	180880000	74567000	106320000	1743	154	1648	3621;3622;3623	8075;8076;8077;8078;8079;8080;8081;8082;8083	8080		9	9606
KIEEIKDFLLTAR	2	1	Unmodified	1574.9032	0.90319307	406	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	2	5	0					2	19.621	19.621	2;3	9.2303E-06	12894	DP1063-5	167.71	167.71			1.9651	2.025	22.03	2	0	Median	30255000	10039000	20217000	1744	406	1649	3624;3625	8084;8085;8086;8087	8085		4	9606
KIGEEEIQKPEEK	3	0	Unmodified	1555.8094	0.80935227	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	2	2	0		1				13.771	13.771	3	0.00021281	3828	DP1063-2	135.94	135.94			1.103	1.2135	NaN	1	0	Median	16353000	7381600	8971200	1745	513	1650	3626	8088;8089	8088		2	9606
KIGLDDEEKLDLFR	2	1	Unmodified	1689.8938	0.8937506	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	2	2	0		1				19.382	19.382	3	0.0091526	11234	DP1063-2	100.4	67.17			NaN	NaN	NaN	0	0	Median	8813700	0	8813700	1746	654	1651	3627	8090	8090		1	9606
KIHIDLPNEQAR	1	1	Unmodified	1432.7787	0.77866126	381	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	1	4	0				1		16.066	16.066	3	0.020533	8047	DP1063-4	67.952	37.094			NaN	NaN	NaN	0	0	Median	2902500	0	2902500	1747	381	1652	3628	8091;8092;8093	8093		3	9606
KIHNANPELTDGQIQAMLR	1	1	Oxidation (M)	2164.1059	0.10588542	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					16.633	16.633	3;4	2.6408E-06	6286	DP1063-1	158.98	158.98			1.1145	1.0392	9.9004	2	0	Median	63889000	28597000	35293000	1748	460	1653	3629;3630	8094;8095;8096;8097;8098;8099	8097	575	6	9606
KINDYVEK	2	0	Unmodified	1007.5288	0.52876073	21	CON__P34955			yes	yes	0	0	1	3	0			1			13.919	13.919	2	0.051006	5397	DP1063-3	83.647	30.861		+	NaN	NaN	NaN	0	0	Median	11104000	11104000	0	1749	21	1654	3631	8100	8100		1	
KISSIQSIVPALEIANAHR	1	1	Unmodified	2046.1586	0.15857291	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	3	0			1			19.959	19.959	3	4.5559E-05	13603	DP1063-3	97.689	97.689			2.2027	1.9978	NaN	1	0	Median	16632000	5751200	10881000	1750	151	1655	3632	8101	8101		1	9606
KIWCFGPDGTGPNILTDITK	2	0	Unmodified	2232.1249	0.12488952	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	2	0		1				22.319	22.319	3	0.01431	15188	DP1063-2	71.148	48.914			NaN	NaN	NaN	0	0	Median	9864400	0	9864400	1751	165	1656	3633	8102;8103	8103		2	9606
KIYSTLAGTR	1	1	Unmodified	1108.6241	0.6240581	647	Q9UJS0;O75746	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	yes	no	0	0	1	3	0			1			14.822	14.822	2	0.014199	6597	DP1063-3	59.931	42.111			3.1699	2.8751	NaN	1	0	Median	5190600	997050	4193600	1752	647	1657	3634	8104	8104		1	9606
KKQLLSACAANTAMDFAK	3	0	Oxidation (M)	1982.9918	0.99176686	692				yes	yes	0	1	2	3	0			1			23.485	23.485	3	0.033073	18193	DP1063-3	66.387	18.839	+		NaN	NaN	NaN	0	0	Median	6231100	6231100	0	1753	692	1658	3635	8105	8105	794	1	9606
KLAVNMVPFPR	1	1	Unmodified	1270.722	0.72199801	414;129;480;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	1	3	0			1			18.868	18.868	3	0.0015018	12095	DP1063-3	83.883	83.883			1.9678	1.7848	NaN	1	0	Median	20151000	6321800	13829000	1754	129;414;480;471	1659	3636	8106;8107;8108;8109	8106		4	9606
KLAVNMVPFPR	1	1	Oxidation (M)	1286.7169	0.71691263	414;129;480;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	1	3	0			1			17.511	17.511	3	0.03491	10212	DP1063-3	50.452	50.452			1.6252	1.474	NaN	1	0	Median	75332000	26073000	49259000	1755	129;414;480;471	1659	3637	8110	8110	126	0	9606
KLDPGSEETQTLVR	1	1	Unmodified	1571.8155	0.81550028	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	3.5	0.5			2	2		16.065	16.065	2;3	7.114E-05	8244	DP1063-3	132.86	95.166			1.95	1.8959	2.0658	2	0	Median	64152000	11186000	52966000	1756	218	1660	3638;3639;3640;3641	8111;8112;8113;8114;8115;8116;8117;8118;8119;8120;8121;8122	8112		12	9606
KLDVTIEPSEEPLFPADELYGIVGANLK	2	0	Unmodified	3056.5958	0.59578425	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			1	1		24.42	24.42	3	1.0229E-05	19330	DP1063-3	71.265	57.643			0.83304	0.80413	5.2129	2	0	Median	13709000	6819900	6888900	1757	624	1661	3642;3643	8123;8124;8125;8126;8127;8128;8129	8123		7	9606
KLEAAEDIAYQLSR	1	1	Unmodified	1605.8362	0.83623572	249	P35232	PHB	Prohibitin	yes	yes	0	0	1	4	0				1		19.422	19.422	3	0.0034864	12496	DP1063-4	87.083	52.9			NaN	NaN	NaN	0	0	Median	5111000	0	5111000	1758	249	1662	3644	8130	8130		1	9606
KLEVEANNAFDQYR	1	1	Unmodified	1695.8216	0.82164829	296	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	4	0				2		17.655	17.655	2;3	0.00066387	10073	DP1063-4	126.76	89.585			NaN	NaN	NaN	0	0	Median	10537000	0	10537000	1759	296	1663	3645;3646	8131;8132;8133	8132		3	9606
KLEYGGQTWHEHCFLCSGCEQPLGSR	1	1	Unmodified	3135.3749	0.37494276	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	1	4	0				1		18.016	18.016	4	8.3678E-08	10495	DP1063-4	92.416	79.184			0.75863	0.73758	NaN	1	0	Median	11617000	5717900	5899100	1760	477	1664	3647	8134	8134		1	9606
KLFIGGLSFETTDESLR	1	1	Unmodified	1911.9942	0.99419293	141	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		21.129	21.129	3	0.00020155	14718	DP1063-4	118.55	91.522			NaN	NaN	NaN	0	0	Median	5580900	0	5580900	1761	141	1665	3648	8135;8136	8136		2	9606
KLGVQTVAVYSEADR	1	1	Unmodified	1634.8628	0.86278482	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0.816		2	2	2		17.149	17.149	2;3	1.1181E-29	9724	DP1063-3	229.56	201.38			1.3878	1.3471	8.2951	6	0	Median	350440000	147500000	202940000	1762	595	1666	3649;3650;3651;3652;3653;3654	8137;8138;8139;8140;8141;8142;8143;8144;8145;8146;8147;8148;8149;8150;8151;8152;8153;8154;8155;8156;8157;8158	8150		22	9606
KLLEGEECR	1	1	Unmodified	1132.5547	0.55465791	22;20;30	CON__P35908v2;P35908;CON__P35908;CON__Q01546;Q01546;CON__Q6NXH9;CON__P07744;Q7RTS7;CON__Q7RTS7;Q86Y46;CON__Q32MB2;P12036;CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7;CON__P50446	KRT2;KRT76;KRT74;KRT73;NEFH;KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73;Neurofilament heavy polypeptide;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	1	3	0			1			13.858	13.858	2	0.0028341	5287	DP1063-3	115.49	66.053		+	NaN	NaN	NaN	0	0	Median	8047200	8047200	0	1763	22;20;30	1667	3655	8159;8160	8159		2	9606
KLNCQVIGASVDSHFCHLAWVNTPK	2	0	Unmodified	2880.4163	0.41633729	446	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	5	0					1	19.233	19.233	4	0.053013	12423	DP1063-5	30.542	5.329			NaN	NaN	NaN	0	0	Median	5019400	0	5019400	1764	446	1668	3656	8161	8161		1	9606
KMEDSVGCLETAEEVKR	2	1	Oxidation (M)	1995.9241	0.9241408	252	P35579	MYH9	Myosin-9	yes	yes	0	1	2	1	0	1					15.647	15.647	3	0.045741	5320	DP1063-1	61.477	29.148			NaN	NaN	NaN	0	0	Median	1709400	0	1709400	1765	252	1669	3657	8162;8163	8163	297	2	9606
KMMADEALGSGLVSR	1	1	2 Oxidation (M)	1595.7647	0.76472704	459	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	2	1	4	0				1		16.178	16.178	3	0.041735	8169	DP1063-4	54.501	26.639			NaN	NaN	NaN	0	0	Median	3513200	0	3513200	1766	459	1670	3658	8164	8164	559;560	1	9606
KNFYFLEMNTR	1	1	Oxidation (M)	1477.7024	0.70238478	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			2			18.15	18.15	2;3	0.0011589	11106	DP1063-3	89.403	89.403			1.4772	1.3398	10.94	2	0	Median	98546000	37000000	61546000	1767	110	1671	3659;3660	8165;8166;8167;8168;8169;8170;8171;8172	8170	87	8	9606
KNFYFLEMNTR	1	1	Unmodified	1461.7075	0.70747015	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			19.53	19.53	3	0.00032628	13039	DP1063-3	105.2	60.904			1.1789	1.0692	NaN	1	0	Median	26621000	13846000	12775000	1768	110	1671	3661	8173;8174	8174		2	9606
KNVMEDPFPR	1	1	Oxidation (M)	1247.5969	0.59685707	549	Q86YF9	DZIP1	Zinc finger protein DZIP1	yes	yes	0	1	1	1	0	1					19.882	19.882	2	0.036002	10207	DP1063-1	61.999	61.999			1.2911	1.2039	NaN	1	0	Median	33597000	13278000	20319000	1769	549	1672	3662	8175	8175	678	1	9606
KPEMFETAIK	2	0	Oxidation (M)	1208.6111	0.61111015	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	1	2	0		1				15.193	15.193	2	0.047164	5631	DP1063-2	59.067	23.159			0.7144	0.68244	NaN	1	0	Median	14345000	8667200	5677400	1770	418	1673	3663	8176	8176	517	1	9606
KPGTLQDQHFSQANR	1	1	Unmodified	1725.8547	0.85467975	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.5	0.866		3		1		13.825	13.825	2;3;4	0.00025446	3860	DP1063-2	122.33	55.338			NaN	NaN	NaN	0	0	Median	70811000	0	70811000	1771	524	1674	3664;3665;3666;3667	8177;8178;8179;8180;8181;8182;8183	8178		7	9606
KPIDYTVLDDVGHGVK	2	0	Unmodified	1754.9203	0.9202997	551	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	1	3	0			1			18.169	18.169	3	0.00098536	11186	DP1063-3	72.489	72.489			1.1329	1.0165	NaN	1	0	Median	35708000	13595000	22113000	1772	551	1675	3668	8184;8185	8185		2	9606
KPITTGGVTYR	1	1	Unmodified	1191.6612	0.66117189	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	4	0				2		14.259	14.259	2;3	5.1126E-06	5584	DP1063-4	130.41	103.16			1.0994	1.0689	NaN	1	0	Median	19170000	4709000	14461000	1773	485	1676	3669;3670	8186;8187;8188;8189;8190;8191	8187		6	9606
KPLLESGTLGTK	2	0	Unmodified	1242.7184	0.71835242	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	2	0		1				15.892	15.892	2	0.000363	6594	DP1063-2	107.34	77.026			2.1491	2.053	NaN	1	0	Median	14601000	3530600	11070000	1774	195	1677	3671	8192;8193	8193		2	9606
KPLPDHVSIVEPK	2	0	Unmodified	1457.8242	0.82421447	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		15.654	15.654	3	0.0013744	7495	DP1063-4	88.224	66.282			1.875	1.9472	NaN	1	0	Median	13290000	6203500	7086400	1775	200	1678	3672	8194;8195;8196	8196		3	9606
KPLPDHVSIVEPKDEILPTTPISEQK	3	0	Unmodified	2909.575	0.57498923	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	4	0				1		18.331	18.331	4	0.0036747	10962	DP1063-4	50.77	50.77			1.0196	1.0664	NaN	1	0	Median	17234000	6616100	10618000	1776	200	1679	3673	8197	8197		1	9606
KPLTSSSAAPQRPISTQR	1	2	Unmodified	1924.049	0.049022463	514	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	2	4	0				1		13.665	13.665	4	0.045452	4907	DP1063-4	54.953	35.948			NaN	NaN	NaN	0	0	Median	4233900	0	4233900	1777	514	1680	3674	8198	8198		1	9606
KPLTTSGFHHSEEGTSSSGSK	2	0	Unmodified	2160.0083	0.00833944	530	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	1	2	0		1				12.74	12.74	4	0.027413	2605	DP1063-2	55.972	28.648			NaN	NaN	NaN	0	0	Median	2898900	0	2898900	1778	530	1681	3675	8199	8199		1	9606
KPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGK	2	0	Unmodified	3492.7664	0.76642087	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			13.332	13.332	5	0.013713	4665	DP1063-3	52.674	37.511			NaN	NaN	NaN	0	0	Median	3464200	3464200	0	1779	449	1682	3676	8200;8201;8202;8203	8200		4	9606
KPQTVAASSIYSMYTQQQAPGK	2	0	Oxidation (M)	2399.1791	0.17910994	475	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	1	1	2	0		1				17.491	17.491	3	0.0015704	8745	DP1063-2	85.805	46.889			NaN	NaN	NaN	0	0	Median	9848500	0	9848500	1780	475	1683	3677	8204;8205	8205	617	2	9606
KPVTDAENCHLAR	1	1	Unmodified	1509.7358	0.73581017	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	1	2.5	0.5		1	1			13.218	13.218	3	8.7168E-06	3155	DP1063-2	190.35	147.32		+	NaN	NaN	NaN	0	0	Median	31954000	31954000	0	1781	23	1684	3678;3679	8206;8207;8208;8209	8207		4	
KQGTIFLAGPPLVK	2	0	Unmodified	1467.8813	0.88133542	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			19.013	19.013	2;3	0.00039267	12221	DP1063-3	168.02	156.48			1.1949	1.0721	0.53888	2	0	Median	215530000	95935000	119600000	1782	624	1685	3680;3681	8210;8211;8212;8213;8214;8215;8216;8217;8218;8219	8211		10	9606
KQISNLQQSISDAEQR	1	1	Unmodified	1843.9388	0.93880331	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3	0			1			16.915	16.915	2	1.2919E-06	9402	DP1063-3	183.06	139.17		+	NaN	NaN	NaN	0	0	Median	8912700	8912700	0	1783	101	1686	3682	8220;8221	8220		2	9606
KQMVIDVLHPGK	2	0	Oxidation (M)	1379.7595	0.75950572	390	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	5	0					1	15.603	15.603	3	0.0019653	7779	DP1063-5	81.676	58.298			1.7481	1.7081	NaN	1	0	Median	15597000	3898500	11698000	1784	390	1687	3683	8222;8223	8222	482	2	9606
KQQISLATQMVR	1	1	Oxidation (M)	1417.7711	0.77113304	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	3	0			1			14.985	14.985	3	0.0049083	6782	DP1063-3	65.234	65.234			3.7348	3.3875	NaN	1	0	Median	13723000	3386300	10336000	1785	301	1688	3684	8224;8225	8225	355	2	9606
KQTALVELLK	2	0	Unmodified	1141.7071	0.70705945	14	CON__P02769			yes	yes	0	0	1	2	0.816	1	1	1			18.184	18.184	2	2.152E-07	11031	DP1063-3	201.61	111.24		+	NaN	NaN	NaN	0	0	Median	537330000	537330000	0	1786	14	1689	3685;3686;3687	8226;8227;8228;8229;8230;8231;8232	8231		7	9606
KQVNYEVDR	1	1	Unmodified	1149.5778	0.57783619	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				13.522	13.522	2	0.000262	2931	DP1063-1	124.08	63.398			1.0263	0.96188	27.871	2	0	Median	21084000	9585900	11499000	1787	460	1690	3688;3689	8233;8234;8235;8236;8237;8238	8236		6	9606
KQVNYEVDRR	1	2	Unmodified	1305.6789	0.67894722	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1.33	0.471	2	1				12.872	12.872	2;3	0.0003793	2205	DP1063-1	109.44	73.531			1.2335	1.2456	5.866	3	0	Plateau	160180000	68886000	91294000	1788	460	1691	3690;3691;3692	8239;8240;8241;8242;8243;8244	8243		6	9606
KQVVNIPSFIVR	1	1	Unmodified	1398.8347	0.83471958	291	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	19.459	19.459	3	0.0017273	12674	DP1063-5	83.045	64.315			0.94159	0.80276	NaN	1	0	Median	12998000	4538500	8459600	1789	291	1692	3693	8245;8246	8245		2	9606
KRAEFTVETR	1	2	Unmodified	1235.6622	0.66223452	190	P21333	FLNA	Filamin-A	yes	yes	0	0	2	1	0	1					13.682	13.682	3	0.0094451	3066	DP1063-1	102.53	18.361			NaN	NaN	NaN	0	0	Median	2402900	0	2402900	1790	190	1693	3694	8247	8247		1	9606
KREELSNVLAAMR	1	2	Oxidation (M)	1531.8141	0.81406049	671	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	2	5	0					1	15.522	15.522	3	0.0026856	7709	DP1063-5	73.927	73.927			1.5077	1.6883	NaN	1	0	Median	12279000	4441900	7837100	1791	671	1694	3695	8248;8249	8248	779	2	9606
KSDVEAIFSK	2	0	Unmodified	1122.5921	0.59208927	133	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		16.97	16.97	2	0.047835	9083	DP1063-4	50.452	15.007			1.5501	1.6098	NaN	1	0	Median	8075000	3589800	4485300	1792	133	1695	3696	8250	8250		0	9606
KSFNDDAMLIEK	2	0	Oxidation (M)	1425.681	0.68098063	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.83	0.687		2	3	1		16.369	16.369	2;3	0.00056897	7276	DP1063-2	114.87	86.071			1.4684	1.4027	15.734	3	0	Median	184880000	67663000	117220000	1793	595	1696	3697;3698;3699;3700;3701;3702	8251;8252;8253;8254;8255;8256;8257;8258;8259;8260;8261;8262;8263;8264	8254	716	14	9606
KSFNDDAMLIEK	2	0	Unmodified	1409.6861	0.68606601	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2	0		1				17.355	17.355	2	0.0053306	8535	DP1063-2	62.166	44.27			1.5095	1.4419	NaN	1	0	Median	22961000	9288000	13674000	1794	595	1696	3703	8265	8265		1	9606
KSGVSDHWALDDHHALHLTR	1	1	Unmodified	2294.1305	0.13046068	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.29	0.452			5	2		16.139	16.139	2;3;4;5	1.5469000000000002E-25	8306	DP1063-3	219.06	197.12			1.4534	1.3183	3.2436	5	0	Median	756620000	293680000	462940000	1795	624	1697	3704;3705;3706;3707;3708;3709;3710	8266;8267;8268;8269;8270;8271;8272;8273;8274;8275;8276;8277;8278;8279;8280;8281;8282;8283;8284;8285;8286;8287;8288;8289	8275		24	9606
KTHIQDNHDGTYTVAYVPDVTGR	1	1	Unmodified	2586.2463	0.2462783	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					17.001	17.001	4	0.0030937	6686	DP1063-1	75.054	52.428			NaN	NaN	NaN	0	0	Median	8492300	0	8492300	1796	190	1698	3711	8290	8290		1	9606
KTTHFVEGGDAGNREDQINR	1	2	Unmodified	2243.0679	0.067920004	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	4	0				1		13.801	13.801	4	0.032315	5052	DP1063-4	49.141	49.141			1.2387	1.4602	NaN	1	0	Median	7613600	2723300	4890300	1797	182	1699	3712	8291	8291		1	9606
KTVTAMDVVYALK	2	0	Oxidation (M)	1453.7851	0.78505177	386	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	18.417	18.417	3	0.0078586	11235	DP1063-5	60.937	46.584			1.6176	1.5805	NaN	1	0	Median	33850000	8815400	25034000	1798	386	1700	3713;3714	8292;8293;8294	8292	478	3	9606
KTVTAMDVVYALK	2	0	Unmodified	1437.7901	0.79013715	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	20.095	20.095	2	0.001862	13470	DP1063-5	89.43	50.716			1.7029	1.6639	NaN	1	0	Median	5469000	1867200	3601900	1799	386	1700	3715	8295;8296	8295		2	9606
KTVTAMDVVYALKR	2	1	Oxidation (M)	1609.8862	0.8861628	386	P62805	HIST1H4A	Histone H4	yes	yes	0	1	2	5	0					1	17.681	17.681	3	0.00028545	10351	DP1063-5	127.03	127.03			1.7473	1.8006	NaN	1	0	Median	23189000	7074000	16115000	1800	386	1701	3716	8297;8298;8299	8298	478	3	9606
KTVTAMDVVYALKR	2	1	Unmodified	1593.8912	0.89124818	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	2	5	0					1	19.025	19.025	3	0.023762	12145	DP1063-5	89.911	52.356			NaN	NaN	NaN	0	0	Median	5329200	0	5329200	1801	386	1701	3717	8300	8300		1	9606
KVACIGAWHPAR	1	1	Unmodified	1364.7136	0.71355858	266	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	1	4	0				1		15.163	15.163	3	0.0098869	6789	DP1063-4	57.175	44.678			1.3268	1.29	NaN	1	0	Median	10078000	4466700	5611500	1802	266	1702	3718	8301;8302;8303	8301		3	9606
KVEEEEDESALKR	2	1	Unmodified	1560.7631	0.76313036	489	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	2	2	0		3				13.407	13.407	3	0.0038238	3419	DP1063-2	93.649	49.735			NaN	NaN	NaN	0	0	Median	3192500	3192500	0	1803	489	1703	3719;3720;3721	8304;8305;8306	8305		3	9606
KVESLQEEIAFLK	2	0	Unmodified	1532.845	0.84500949	136	P08670	VIM	Vimentin	yes	yes	0	0	1	3	0			1			20.28	20.28	2	0.010999	14025	DP1063-3	90.614	50.262			NaN	NaN	NaN	0	0	Median	6852400	0	6852400	1804	136	1704	3722	8307	8307		1	9606
KVGLIAAR	1	1	Unmodified	826.53887	0.53887191	400	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		14.22	14.22	2	0.015772	5566	DP1063-4	65.803	21.272			1.6479	1.6021	NaN	1	0	Median	15880000	5877600	10002000	1805	400	1705	3723	8308;8309;8310	8308		3	9606
KVNNADDFPNLFR	1	1	Unmodified	1548.7685	0.76849051	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0.816	2	2	2			19.451	19.451	2;3	1.3832E-39	9623	DP1063-1	302.09	279.4			1.1414	1.0497	11.592	6	0	Median	838830000	376060000	462780000	1806	460	1706	3724;3725;3726;3727;3728;3729	8311;8312;8313;8314;8315;8316;8317;8318;8319;8320;8321;8322;8323;8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337	8314		27	9606
KVPQVSTPTLVEVSR	1	1	Unmodified	1638.9305	0.93047046	14	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	1	2.9	0.759	2	3	21	2	1	22.309	22.309	2;3	7.8209E-12	8778	DP1063-2	176.25	153.86		+	NaN	NaN	NaN	0	0	Median	6464799999.999999	6464799999.999999	0	1807	14	1707	3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754;3755;3756;3757;3758	8338;8339;8340;8341;8342;8343;8344;8345;8346;8347;8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358;8359;8360;8361;8362;8363;8364;8365;8366;8367;8368;8369;8370;8371;8372;8373;8374;8375;8376;8377;8378;8379;8380;8381;8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392;8393	8343		56	9606
KVVGCSCVVVK	2	0	Unmodified	1233.6573	0.65734884	206	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	1	5	0					1	14.061	14.061	2	0.0020589	5980	DP1063-5	80.706	80.706			1.6432	1.6056	NaN	1	0	Median	6021200	2096400	3924800	1808	206	1708	3759	8394;8395	8395		2	9606
KYDAFLASESLIK	2	0	Unmodified	1483.7922	0.79224564	397	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	5	0					1	19.618	19.618	2	0.0028659	12921	DP1063-5	82.774	82.774			1.9771	1.9318	NaN	1	0	Median	11346000	3622500	7723700	1809	397	1709	3760	8396;8397	8396		2	9606
KYELGRPAANTK	2	1	Unmodified	1346.7306	0.73064844	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	2	5	0					1	13.206	13.206	3	0.011273	4997	DP1063-5	62.338	44.971			1.3778	1.4198	NaN	1	0	Median	7932800	3434800	4498000	1810	368	1710	3761	8398;8399	8399		2	9606
LAADDFR	0	1	Unmodified	806.39227	0.39226725	19;118;12;17;16	CON__P13645;P13645;CON__P02535-1;Q7Z3Y7;CON__P08730-1;CON__ENSEMBL:ENSP00000377550;P13646;CON__Q148H6;CON__Q7Z3Y7;CON__Q3ZAW8;CON__Q9Z2K1;CON__Q2M2I5;Q2M2I5;CON__A2A5Y0;CON__Q14525;CON__O76015;CON__O76014;CON__REFSEQ:XP_986630;CON__O76013;CON__Q9UE12;CON__Q497I4;O76015;O76014;Q14532;CON__Q15323;O76013;Q15323;Q92764;CON__Q14532;CON__A2AB72;CON__Q92764;Q14525;CON__P02533;P02533;CON__Q9QWL7;CON__Q6IFX2;CON__Q04695;CON__A2A4G1;Q04695;CON__P19001;CON__P19012;P19012;CON__P08779;P08779;CON__P08727;P08727;P05783;CON__P05784	KRT10;KRT28;KRT13;KRT24;KRT38;KRT37;KRT32;KRT36;KRT31;KRT35;KRT33B;KRT14;KRT17;KRT15;KRT16;KRT19;KRT18	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 24;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha6;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha3-II;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 18	no	no	0	0	0	1.67	0.943	2		1			16.33	16.33	2	0.0036074	8592	DP1063-3	122.98	60.64		+	NaN	NaN	NaN	0	0	Median	129320000	129320000	0	1811	19;12;17;16;118	1711	3762;3763;3764	8400;8401;8402;8403	8402		4	9606
LAAGDQLLSVDGR	0	1	Unmodified	1313.6939	0.69392858	338	P55196	MLLT4	Afadin	yes	yes	0	0	0	2	0		1				18.874	18.874	2	0.0019272	10585	DP1063-2	111.86	40.947			NaN	NaN	NaN	0	0	Median	4617800	0	4617800	1812	338	1712	3765	8404	8404		1	9606
LAAIAESGVER	0	1	Unmodified	1114.5982	0.59823728	224	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	5	0					1	16.211	16.211	2	0.002907	8573	DP1063-5	116.3	57.059			NaN	NaN	NaN	0	0	Median	0	0	0	1813	224	1713	3766	8405	8405		1	9606
LAALGGGAGPGAAEPEQR	0	1	Unmodified	1620.822	0.82198264	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3.5	1.12		1	1	1	1	16.655	16.655	2	1.3881E-11	9005	DP1063-3	198.37	131.81			3.8726	2.5681	NaN	1	0	Median	169890000	3533700	166360000	1814	524	1714	3767;3768;3769;3770	8406;8407;8408;8409;8410;8411;8412;8413;8414;8415;8416	8408		11	9606
LAATNALLNSLEFTK	1	0	Unmodified	1604.8774	0.87737225	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				22.43	22.43	2	4.0546E-17	15299	DP1063-2	222.2	144.81			NaN	NaN	NaN	0	0	Median	13585000	0	13585000	1815	495	1715	3771	8417;8418	8418		2	9606
LACDVDQVTR	0	1	Unmodified	1175.5605	0.56047157	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.661	15.661	2	0.0067946	5254	DP1063-1	91.265	40.199			2.8347	2.225	NaN	1	0	Median	7669000	1820200	5848800	1816	420	1716	3772	8419;8420	8419		2	9606
LADQIFAYYK	1	0	Unmodified	1230.6285	0.62847478	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				20.642	20.642	2	0.00055108	12986	DP1063-2	143.01	81.011			NaN	NaN	NaN	0	0	Median	3183800	0	3183800	1817	543;581	1717	3773	8421	8421		1	9606
LAEAEETAR	0	1	Unmodified	988.48254	0.48253882	553	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				13.363	13.363	2	0.0012605	3321	DP1063-2	123.98	32.083			NaN	NaN	NaN	0	0	Median	4665900	0	4665900	1818	553	1718	3774	8422;8423	8422		2	9606
LAELEEFINGPNNAHIQQVGDR	0	1	Unmodified	2463.2142	0.21424989	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					20.364	20.364	3	1.3001E-05	10818	DP1063-1	161.55	139.44			NaN	NaN	NaN	0	0	Median	3541000	0	3541000	1819	428	1719	3775	8424;8425;8426	8426		3	9606
LAGESESNLR	0	1	Unmodified	1074.5306	0.53055165	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				14.476	14.476	2	0.0093989	4723	DP1063-2	85.862	25.843			2.1618	1.5755	NaN	1	0	Median	11917000	3491000	8426200	1820	337	1720	3776	8427;8428	8428		2	9606
LAGESESNLRK	1	1	Unmodified	1202.6255	0.62551466	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	2	0		1				13.211	13.211	3	0.0011522	3158	DP1063-2	103.31	57.483			NaN	NaN	NaN	0	0	Median	2889600	0	2889600	1821	337	1721	3777	8429;8430	8429		2	9606
LAGGDWFTSR	0	1	Unmodified	1108.5302	0.53015772	234	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	3	0			1			19.794	19.794	2	0.0016029	13306	DP1063-3	109.48	46.172			1.7762	1.3291	NaN	1	0	Median	9706200	3716300	5989900	1822	234	1722	3778	8431;8432	8431		2	9606
LAGSPPGSGQWKPK	2	0	Unmodified	1408.7463	0.7462985	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.8	0.748		2	2	1		15.226	15.226	2;3	0.00050858	5641	DP1063-2	121.21	84.263			NaN	NaN	NaN	0	0	Median	359010000	0	359010000	1823	524	1723	3779;3780;3781;3782;3783	8433;8434;8435;8436;8437;8438;8439;8440;8441	8433		9	9606
LAGTQPLEVLEAVQR	0	1	Unmodified	1622.8992	0.89917033	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				21.669	21.669	2	1.4525E-06	14341	DP1063-2	182.23	129.66			NaN	NaN	NaN	0	0	Median	13156000	0	13156000	1824	195	1724	3784	8442;8443	8443		2	9606
LAKEYEATLEECCAK	2	0	Unmodified	1813.8226	0.82263585	14	CON__P02769			yes	yes	0	0	1	3	0			2			16.423	16.423	2;3	2.9438E-09	8769	DP1063-3	170.66	133.51		+	NaN	NaN	NaN	0	0	Median	0	0	0	1825	14	1725	3785;3786	8444;8445	8445		2	9606
LALDLEIATYR	0	1	Unmodified	1276.7027	0.70270235	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	0.816		1	1	1		21.597	21.597	2	3.9411E-06	15807	DP1063-3	148.69	0		+	NaN	NaN	NaN	0	0	Median	8797200	8797200	0	1826	101	1726	3787;3788;3789	8446;8447;8448;8449	8447		4	9606
LALDVEIATYR	0	1	Unmodified	1262.6871	0.68705229	22;20;30	CON__P35908v2;P35908;CON__P35908;CON__Q01546;Q01546;CON__P07744;CON__Q5XKE5;Q5XKE5;P12035;CON__P12035;CON__REFSEQ:XP_932229;CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7;CON__P50446	KRT2;KRT76;KRT79;KRT3;KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	0	4	0				1		20.722	20.722	2	0.052306	14174	DP1063-4	72.006	12.656		+	NaN	NaN	NaN	0	0	Median	1095600	1095600	0	1827	22;20;30	1727	3790	8450	8450		1	9606
LALQALTEK	1	0	Unmodified	985.5808	0.5807963	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.318	18.318	2	3.2999E-10	11353	DP1063-3	162.25	83.482			1.3494	1.0836	NaN	1	0	Median	35411000	15259000	20152000	1828	449	1728	3791	8451;8452	8451		2	9606
LALVTGGEIASTFDHPELVK	1	0	Unmodified	2096.1154	0.11537069	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			2			21.381	21.381	2;3	0.00062368	15598	DP1063-3	115.1	60.63			NaN	NaN	NaN	0	0	Median	33593000	0	33593000	1829	419	1729	3792;3793	8453;8454;8455	8455		3	9606
LAMQEFMILPVGAANFR	0	1	2 Oxidation (M)	1938.9696	0.96957485	123	P06733	ENO1	Alpha-enolase	yes	yes	0	2	0	4	0				1		22.124	22.124	2	5.6207E-05	15814	DP1063-4	156	113.97			2.4391	1.6891	NaN	1	0	Median	23092000	6903600	16189000	1830	123	1730	3794	8456;8457;8458;8459;8460	8457	111;112	5	9606
LAMQEFMILPVGAANFR	0	1	Oxidation (M)	1922.9747	0.97466023	123	P06733	ENO1	Alpha-enolase	yes	yes	0	1	0	4	0				2		23.167	23.167	2	4.3778E-06	16949	DP1063-4	170.18	170.18			2.4702	1.5741	24.136	2	0	Median	13696000	3410000	10286000	1831	123	1730	3795;3796	8461;8462;8463;8464;8465	8461	111;112	5	9606
LAPEYEAAATR	0	1	Unmodified	1190.5932	0.5931519	233	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	3	0			1			15.875	15.875	2	0.022501	7961	DP1063-3	68.847	31.371			1.8786	1.3695	NaN	1	0	Median	13056000	3573900	9481800	1832	233	1731	3797	8466;8467	8466		2	9606
LAPITSDPTEATAVGAVEASFK	1	0	Unmodified	2174.1107	0.11067925	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			2			22.29	22.29	2	1.3573E-38	16623	DP1063-3	233.62	233.62			2.1943	1.762	NaN	1	0	Median	24442000	7090000	17352000	1833	168	1732	3798;3799	8468;8469;8470;8471;8472;8473	8468		6	9606
LAQANGWGVMVSHR	0	1	Oxidation (M)	1540.7569	0.75687996	123	P06733	ENO1	Alpha-enolase	yes	yes	0	1	0	4	0				1		16.525	16.525	3	0.037381	8559	DP1063-4	62.287	29.084			NaN	NaN	NaN	0	0	Median	23704000	0	23704000	1834	123	1733	3800	8474	8474	113	1	9606
LAQANGWGVMVSHR	0	1	Unmodified	1524.762	0.76196534	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		17.817	17.817	2	0.020695	10243	DP1063-4	81.625	37.316			NaN	NaN	NaN	0	0	Median	0	0	0	1835	123	1733	3801	8475	8475		1	9606
LAQHITYVHQHSR	0	1	Unmodified	1588.8223	0.82225741	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				12.885	12.885	3	0.0020638	2805	DP1063-2	78.486	78.486			1.8373	1.3916	NaN	1	0	Median	6773900	2742100	4031800	1836	246	1734	3802	8476;8477;8478;8479;8480	8478		5	9606
LAQQISDEASR	0	1	Unmodified	1216.6048	0.60477922	574	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1	0	1					14.964	14.964	2	0.0013626	4519	DP1063-1	125.75	65.947			NaN	NaN	NaN	0	0	Median	1765600	0	1765600	1837	574	1735	3803	8481	8481		1	9606
LAQQMENRPSVQAALK	1	1	Oxidation (M)	1798.936	0.93596654	672	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	1	4	0				1		15.221	15.221	3	0.0084276	6836	DP1063-4	54.898	29.963			1.7058	1.6584	NaN	1	0	Median	10706000	3590800	7115600	1838	672	1736	3804	8482;8483;8484;8485	8483	782	4	9606
LASDLLEWIR	0	1	Unmodified	1214.6659	0.66592292	60	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	yes	no	0	0	0	2	0		1				23.554	23.554	2	0.00073357	16715	DP1063-2	171.99	48.779			NaN	NaN	NaN	0	0	Median	4735200	0	4735200	1839	60	1737	3805	8486;8487	8486		2	9606
LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR	0	1	2 Oxidation (M)	4235.0335	0.033531693	281	P43243	MATR3	Matrin-3	yes	yes	0	2	0	2	0		1				21.027	21.027	4	7.2538E-08	13494	DP1063-2	83.876	63.98			NaN	NaN	NaN	0	0	Median	12627000	0	12627000	1840	281	1738	3806	8488;8489;8490	8488	338;339	3	9606
LASYLDKVQALEEANNDLENK	2	0	Unmodified	2376.1809	0.18088408	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			20.513	20.513	3	1.8500999999999997E-21	14369	DP1063-3	219.96	166		+	NaN	NaN	NaN	0	0	Median	49223000	49223000	0	1841	251	1739	3807	8491;8492	8492		2	9606
LASYLDR	0	1	Unmodified	836.43922	0.43921744	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		16.249	16.249	2	0.027536	8280	DP1063-4	104.11	59.58			2.5139	1.7854	NaN	1	0	Median	28154000	6962800	21191000	1842	118	1740	3808	8493;8494	8494		2	9606
LATNAAVTVLR	0	1	Unmodified	1127.6663	0.66625727	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			17.645	17.645	2	0.0028361	10419	DP1063-3	101.38	63.873			5.156	4.0079	NaN	1	0	Median	52218000	7846200	44372000	1843	319	1741	3809	8495;8496	8496		2	9606
LATQLTGPVMPVR	0	1	Oxidation (M)	1397.7701	0.77007041	214	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	1	0	5	0					1	17.608	17.608	2	0.010926	10369	DP1063-5	75.566	46.839			1.8281	1.3653	NaN	1	0	Median	13533000	4582900	8950600	1844	214	1742	3810	8497;8498	8498	266	2	9606
LATQSNEITIPVTFESR	0	1	Unmodified	1904.9844	0.98435652	104	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	20.724	20.724	2	6.635399999999999E-22	14280	DP1063-5	220.4	220.4			2.0141	1.5042	NaN	1	0	Median	17047000	6051300	10996000	1845	104	1743	3811	8499;8500	8499		2	9606
LATTILQHWK	1	0	Unmodified	1209.687	0.68699271	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.263	18.263	3	0.0039257	8232	DP1063-1	68.371	68.371			1.9475	1.5128	NaN	1	0	Median	6736300	1669600	5066700	1846	420	1744	3812	8501	8501		1	9606
LAVEALSSLDGDLAGR	0	1	Unmodified	1585.8312	0.83115034	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		21.635	21.635	2	2.0788E-05	15290	DP1063-4	218.94	218.94			2.6758	1.844	NaN	1	0	Median	22231000	6378400	15852000	1847	162	1745	3813	8502;8503;8504;8505	8502		4	9606
LAVNMVPFPR	0	1	Oxidation (M)	1158.6219	0.62194961	414;129;480;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		19.081	19.081	2	1.42E-05	12291	DP1063-3	130.22	130.22			1.884	1.4192	19.265	2	0	Median	127950000	40956000	86993000	1848	129;414;480;471	1746	3814;3815	8506;8507;8508;8509;8510;8511;8512;8513;8514	8508	126	9	9606
LAVNMVPFPR	0	1	Unmodified	1142.627	0.62703499	414;129;480;471	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885;Q13509	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		20.545	20.545	2	7.1914E-10	14421	DP1063-3	181.81	181.81			2.2964	1.5969	6.528	2	0	Median	71330000	20573000	50756000	1849	129;414;480;471	1746	3816;3817	8515;8516;8517;8518;8519;8520	8518		6	9606
LAVPIILR	0	1	Unmodified	893.60622	0.60622319	26	CON__Q3SZ57			yes	yes	0	0	0	2	0		1				20.782	20.782	2	0.041084	13238	DP1063-2	84.359	9.6416		+	NaN	NaN	NaN	0	0	Median	3646300	3646300	0	1850	26	1747	3818	8521	8521		1	
LAYIAHPK	1	0	Unmodified	911.52289	0.52288749	299	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	5	0					1	14.086	14.086	2	0.00047485	6006	DP1063-5	132.94	132.94			1.5759	1.334	NaN	1	0	Median	6982900	2582500	4400400	1851	299	1748	3819	8522;8523	8523		2	9606
LCLHSMSLWGSWGSR	0	1	Oxidation (M)	1791.8185	0.81849394	539	Q6ZR03		Uncharacterized protein FLJ46757	yes	yes	0	1	0	4	0				1		13.91	13.91	3	0.035406	5276	DP1063-4	40.477	22.721			1.1501	0.762	NaN	1	0	Median	5569100	2609800	2959300	1852	539	1749	3820	8524	8524	671	1	9606
LCLISTFLEDGIR	0	1	Unmodified	1535.8018	0.80176447	53	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	1	0	1					24.187	24.187	2	3.5273E-05	15199	DP1063-1	134.57	81.84			NaN	NaN	NaN	0	0	Median	1605500	0	1605500	1853	53	1750	3821	8525;8526	8525		2	9606
LCPNSTGAEIR	0	1	Unmodified	1216.587	0.58702067	257	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	4	0				1		15.089	15.089	2	0.032676	6712	DP1063-4	79.906	27.121			NaN	NaN	NaN	0	0	Median	0	0	0	1854	257	1751	3822	8527	8527		1	9606
LCQLCAGK	1	0	Unmodified	948.45211	0.45210709	23	CON__Q0IIK2;CON__Q29443;CON__Q2HJF0			yes	no	0	0	0	2	0		1				14.492	14.492	2	0.037449	4767	DP1063-2	85.359	50.159		+	NaN	NaN	NaN	0	0	Median	5223600	5223600	0	1855	23	1752	3823	8528;8529	8529		2	
LCVLHEK	1	0	Unmodified	897.47422	0.47422274	14	CON__P02769			yes	yes	0	0	0	3	0			1			14.107	14.107	2	0.041883	5611	DP1063-3	94.006	51.61		+	NaN	NaN	NaN	0	0	Median	253430000	253430000	0	1856	14	1753	3824	8530	8530		1	9606
LCYVALDFEQEMATAASSSSLEK	1	0	Oxidation (M)	2565.1615	0.16147054	349;409	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				2		21.456	21.456	2;3	2.1175E-15	15024	DP1063-4	189.33	164.46			2.9817	2.0638	8.9721	2	0	Median	37191000	8791100	28400000	1857	349;409	1754	3825;3826	8531;8532;8533;8534;8535;8536	8531	441	6	9606
LCYVALDFEQEMATAASSSSLEK	1	0	Unmodified	2549.1666	0.16655592	349;409	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				2		23.862	23.862	2;3	4.0731E-05	17937	DP1063-4	156.72	120.94			NaN	NaN	NaN	0	0	Median	4674400	0	4674400	1858	349;409	1754	3827;3828	8537;8538;8539;8540;8541;8542	8539		6	9606
LDAEPRPPPTQEAA	0	1	Unmodified	1490.7365	0.73652168	665	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	1	3	0			1			15.874	15.874	2	0.0027189	8009	DP1063-3	97.214	72.832			0.96702	0.7074	NaN	1	0	Median	12555000	7218100	5337200	1859	665	1755	3829	8543;8544;8545;8546	8546		4	9606
LDGEASINNR	0	1	Unmodified	1087.5258	0.52580062	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		14.529	14.529	2	6.6478E-06	5918	DP1063-4	143.28	69.62			1.9371	1.2521	NaN	1	0	Median	13465000	4698700	8766400	1860	86	1756	3830	8547;8548;8549;8550	8547		4	9606
LDGLVETPTGYIESLPR	0	1	Unmodified	1858.9676	0.96764382	339	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3	0			2			21.947	21.947	2	0.00048231	16288	DP1063-3	127.71	76.103			NaN	NaN	NaN	0	0	Median	7325000	0	7325000	1861	339	1757	3831;3832	8551;8552;8553	8551		3	9606
LDHKFDLMYAK	2	0	Oxidation (M)	1395.6857	0.68567208	413;605	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	1	1	3.5	0.5			1	1		16.246	16.246	2;3	0.0024301	8513	DP1063-3	84.198	84.198			1.9251	1.8583	18.517	2	0	Median	25778000	9235200	16542000	1862	413;605	1758	3833;3834	8554;8555;8556;8557;8558;8559	8555	510	6	9606
LDHKFDLMYAK	2	0	Unmodified	1379.6908	0.69075746	413;605	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	0	1	3	0			1			17.276	17.276	3	3.5109E-06	9880	DP1063-3	145.28	145.28			2.2311	2.0018	NaN	1	0	Median	42536000	11428000	31107000	1863	413;605	1758	3835	8560;8561	8560		2	9606
LDIDSPPITAR	0	1	Unmodified	1196.6401	0.6401021	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			1			18.381	18.381	2	0.00027683	11411	DP1063-3	126.31	92.06			2.1397	1.5631	NaN	1	0	Median	23317000	7052400	16265000	1864	168	1759	3836	8562;8563;8564;8565	8563		4	9606
LDKAQIHDLVLVGGSTR	1	1	Unmodified	1821.0108	0.010846043	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			3			18.041	18.041	2;3;4	4.3933E-24	10941	DP1063-3	233.28	172.93			3.7711	3.4204	11.513	2	0	Median	130060000	24161000	105900000	1865	149	1760	3837;3838;3839	8566;8567;8568;8569;8570;8571;8572;8573;8574	8573		9	9606
LDKSQIHDIVLVGGSTR	1	1	Unmodified	1837.0058	0.005760665	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			2			17.71	17.71	2;3	5.3843E-16	10454	DP1063-3	212.03	181.83			3.4183	3.1004	NaN	1	0	Median	58209000	9941600	48267000	1866	153	1761	3840;3841	8575;8576;8577;8578;8579;8580	8579		6	9606
LDLLEEK	1	0	Unmodified	858.46985	0.46984887	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.231	18.231	2	0.0030524	8133	DP1063-1	143.02	0			NaN	NaN	NaN	0	0	Median	14845000	14845000	0	1867	460	1762	3842;3843;3844	8581;8582;8583	8581		3	9606
LDNASAFQGAVISPHYDSLLVK	1	0	Unmodified	2344.2063	0.20631097	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.14	0.515	1	10	3			26.693	26.693	2;3	1.4480999999999999E-39	13220	DP1063-2	303.07	303.07			1.3112	1.0969	28.41	10	0	Median	1300900000	541770000	759160000	1868	154	1763	3845;3846;3847;3848;3849;3850;3851;3852;3853;3854;3855;3856;3857;3858	8584;8585;8586;8587;8588;8589;8590;8591;8592;8593;8594;8595;8596;8597;8598;8599;8600;8601;8602;8603;8604;8605;8606;8607;8608;8609;8610	8591		27	9606
LDPGSEETQTLVR	0	1	Unmodified	1443.7205	0.72053726	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		17.259	17.259	2	3.5471E-05	9508	DP1063-4	164.33	118.97			1.5284	0.96142	NaN	1	0	Median	10877000	3693200	7184100	1869	218	1764	3859	8611;8612;8613	8611		3	9606
LDPHNHVLYSNR	0	1	Unmodified	1463.727	0.72696004	240	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	3	0			1			14.428	14.428	3	0.0017528	6032	DP1063-3	84.718	61.997			2.1786	1.5719	NaN	1	0	Median	19843000	6566500	13277000	1870	240	1765	3860	8614;8615;8616;8617	8614		4	9606
LDQLIYIPLPDEK	1	0	Unmodified	1555.8498	0.84976052	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				22.677	22.677	2	0.0011116	15582	DP1063-2	110.08	110.08			2.2821	1.9092	NaN	1	0	Median	11118000	3546600	7571900	1871	337	1766	3861	8618;8619;8620	8618		3	9606
LDQPMTEIVSR	0	1	Oxidation (M)	1303.6442	0.6442012	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	1	0	2	0		1				16.256	16.256	2	0.038806	7050	DP1063-2	80.706	35.726			NaN	NaN	NaN	0	0	Median	8572600	0	8572600	1872	195	1767	3862	8621	8621	246	1	9606
LDSELKNMQDMVEDYR	1	1	2 Oxidation (M)	2016.8769	0.87685626	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	2	0.816	1	1	1			16.599	16.599	2	0.00015888	8889	DP1063-3	171.36	146.84		+	NaN	NaN	NaN	0	0	Median	52322000	52322000	0	1873	101	1768	3863;3864;3865	8622;8623;8624;8625;8626;8627	8626	73;74	6	9606
LDVGNFSWGSECCTR	0	1	Unmodified	1786.7403	0.7403032	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	20.718	20.718	2	0.055652	14341	DP1063-5	74.392	37.065			NaN	NaN	NaN	0	0	Median	6651800	6651800	0	1874	368	1769	3866	8628	8628		1	9606
LDVTSVEDYK	1	0	Unmodified	1167.5659	0.5659341	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			18.352	18.352	2	0.00029812	11409	DP1063-3	131.5	83.08			NaN	NaN	NaN	0	0	Median	13129000	0	13129000	1875	301	1770	3867	8629;8630	8629		2	9606
LEAEIATYR	0	1	Unmodified	1064.5502	0.55022446	118	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	4	0				1		17.09	17.09	2	0.0028254	9222	DP1063-4	115.49	81.697			2.4581	1.5624	NaN	1	0	Median	11805000	3160800	8644300	1876	118	1771	3868	8631;8632	8631		2	9606
LEAVSHTSDMHR	0	1	Unmodified	1381.6408	0.64084715	431	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	3	0			1			13.206	13.206	3	0.00016492	4555	DP1063-3	112.94	85.456			2.5897	2.0931	NaN	1	0	Median	4048000	1163000	2885100	1877	431	1772	3869	8633;8634	8634		2	9606
LECVEPNCR	0	1	Unmodified	1175.5063	0.50632751	422	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	0	5	0					1	14.699	14.699	2	1.5366E-07	6740	DP1063-5	146.54	125.08			1.8048	1.3479	NaN	1	0	Median	15457000	5231800	10226000	1878	422	1773	3870	8635;8636;8637;8638	8638		4	9606
LEGGSGGDSEVQR	0	1	Unmodified	1289.5848	0.58477206	367	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	4	0				1		13.426	13.426	2	0.00052633	4614	DP1063-4	152.07	116.62			3.0736	1.8903	NaN	1	0	Median	9116500	2366600	6749900	1879	367	1774	3871	8639;8640;8641;8642	8639		4	9606
LEGLGSSEADQDGLASTVR	0	1	Unmodified	1903.9123	0.91231379	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.665	18.665	2	7.3307E-11	11879	DP1063-3	181.67	127.2			1.4749	1.1264	NaN	1	0	Median	41485000	17325000	24160000	1880	449	1775	3872	8643;8644;8645	8644		3	9606
LEGLTDEINFLR	0	1	Unmodified	1418.7405	0.74054442	15	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3.5	0.5			1	1		22.454	22.454	2	8.100500000000001E-20	16903	DP1063-3	214.71	98.188		+	2.4327	1.6819	5.8434	2	0	Median	40021000	11088000	28933000	1881	15	1776	3873;3874	8646;8647;8648;8649;8650;8651;8652;8653	8646		8	9606
LEGNTVGVEAAR	0	1	Unmodified	1214.6255	0.62551466	285	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	3	0			1			15.337	15.337	2	0.0020903	7297	DP1063-3	117.02	60.293			NaN	NaN	NaN	0	0	Median	4160700	0	4160700	1882	285	1777	3875	8654	8654		1	9606
LEKEIETYHNLLEGGQEDFESSGAGK	2	0	Unmodified	2879.3461	0.3461115	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			19.555	19.555	3	9.4185E-19	13080	DP1063-3	204.23	176.2		+	NaN	NaN	NaN	0	0	Median	19838000	19838000	0	1883	251	1778	3876	8655;8656	8655		2	9606
LELAQYR	0	1	Unmodified	891.48142	0.48141661	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.055	17.055	2	0.050946	9600	DP1063-3	89.673	17.959			1.8464	1.4571	NaN	1	0	Median	63494000	22150000	41344000	1884	207	1779	3877	8657	8657		1	9606
LELQGPR	0	1	Unmodified	811.4552	0.45520186	187	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				15.778	15.778	2	0.0015134	6379	DP1063-2	137.5	70.47			1.8286	1.3987	NaN	1	0	Median	42863000	15767000	27096000	1885	187	1780	3878	8658;8659;8660	8660		3	9606
LENEIQTYR	0	1	Unmodified	1164.5775	0.57750184	19	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2	1	1		1			16.245	16.245	2	0.00027843	5979	DP1063-1	195.06	117.32		+	NaN	NaN	NaN	0	0	Median	103830000	103830000	0	1886	19	1781	3879;3880	8661;8662;8663;8664	8661		4	9606
LEPHKPQQIPIDSTVSFGASTR	1	1	Unmodified	2407.2496	0.24957276	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		17.597	17.597	3	6.4169E-05	9943	DP1063-4	116.45	71.083			NaN	NaN	NaN	0	0	Median	4517000	0	4517000	1887	458	1782	3881	8665;8666	8665		2	9606
LEQGQAIDDLMPAQK	1	0	Oxidation (M)	1671.8138	0.81378572	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	1	0	4	0				1		17.385	17.385	2	0.0017774	9711	DP1063-4	136.01	136.01			2.659	1.8405	NaN	1	0	Median	17826000	5011000	12815000	1888	162	1783	3882	8667;8668;8669	8669	198	3	9606
LESEEEGVPSTAIR	0	1	Unmodified	1515.7417	0.74166663	120	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		16.793	16.793	2	0.0017593	8876	DP1063-4	108.7	52.265			1.3243	0.83695	NaN	1	0	Median	7140300	3700300	3440000	1889	120	1784	3883	8670;8671;8672	8670		3	9606
LESEGSPETLTNLR	0	1	Unmodified	1544.7682	0.76821574	639	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	0	1					18.098	18.098	2	0.0003258	7922	DP1063-1	185.99	156.52			1.6591	1.299	NaN	1	0	Median	8073700	3128900	4944800	1890	639	1785	3884	8673;8674;8675	8674		3	9606
LESGMQNMSIHTK	1	0	2 Oxidation (M)	1506.6807	0.68066306	15	CON__P05787;P05787;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	2	0	4	0				1		12.785	12.785	3	0.00080065	4009	DP1063-4	92.781	92.781		+	2.799	1.9374	NaN	1	0	Median	5132600	1774400	3358200	1891	15	1786	3885	8676;8677	8677	18;19	2	9606
LETYENAR	0	1	Unmodified	994.47197	0.47197413	80	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				14.409	14.409	2	0.010442	4666	DP1063-2	102.71	43.732			NaN	NaN	NaN	0	0	Median	5469600	0	5469600	1892	80	1787	3886	8678;8679	8679		2	9606
LFADAVQELLPQYK	1	0	Unmodified	1633.8716	0.87155859	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				23.28	23.28	2	0.0016118	16343	DP1063-2	115.33	63.048			NaN	NaN	NaN	0	0	Median	4103100	0	4103100	1893	246	1788	3887	8680;8681;8682	8680		3	9606
LFDQAFGLPR	0	1	Unmodified	1162.6135	0.61349341	104	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	21.199	21.199	2	5.0413E-06	14866	DP1063-5	144.38	119.6			1.6676	1.2455	NaN	1	0	Median	14207000	5528700	8678200	1894	104	1789	3888	8683;8684;8685;8686	8685		4	9606
LFEFAGYDVLR	0	1	Unmodified	1328.6765	0.6764876	333	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			22.896	22.896	2	0.0040446	17456	DP1063-3	103.7	49.151			NaN	NaN	NaN	0	0	Median	5295700	0	5295700	1895	333	1790	3889	8687;8688	8687		2	9606
LFEGNALLR	0	1	Unmodified	1031.5764	0.57637963	291	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	19.416	19.416	2	0.00042732	12581	DP1063-5	128.57	58.298			2.3189	1.7318	NaN	1	0	Median	36322000	12641000	23681000	1896	291	1791	3890	8689;8690;8691;8692	8689		4	9606
LFEYGGFPPESNYLFLGDYVDR	0	1	Unmodified	2597.2115	0.21145592	365;260	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.75	0.433			1	3		25.266	25.266	2;3	2.9191E-09	19289	DP1063-4	185.27	140.76			NaN	NaN	NaN	0	0	Median	16837000	0	16837000	1897	260;365	1792	3891;3892;3893;3894	8693;8694;8695;8696;8697;8698;8699;8700;8701;8702	8696		10	9606
LFIGGLSFETTDESLR	0	1	Unmodified	1783.8992	0.89922991	141	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				2		22.883	22.883	2	3.05E-05	16764	DP1063-4	163.45	121.44			2.4235	1.4882	NaN	1	0	Median	9007900	3226000	5781900	1898	141	1793	3895;3896	8703;8704	8703		2	9606
LFIGGLSFETTEESLR	0	1	Unmodified	1797.9149	0.91487997	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		22.939	22.939	2	1.2652E-15	16813	DP1063-4	208.74	208.74			2.369	1.5178	NaN	1	0	Median	12562000	2730200	9831400	1899	197	1794	3897	8705;8706	8705		2	9606
LFLQGPK	1	0	Unmodified	801.47487	0.47487467	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			17.593	17.593	2	0.019316	8777	DP1063-2	119.22	61.758			1.3865	1.1364	7.8846	2	0	Median	550580000	223010000	327570000	1900	154	1795	3898;3899	8707;8708;8709;8710;8711;8712;8713	8708		7	9606
LFLTNESGYYLDISLYK	1	0	Unmodified	2038.0299	0.02990973	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					23.85	23.85	2	0.0009365	14823	DP1063-1	114.56	0			1.3171	1.0682	NaN	1	0	Median	3360700	1442800	1917900	1901	460	1796	3900;3901	8714;8715;8716;8717	8716		4	9606
LFQECCPHSTDR	0	1	Unmodified	1548.6449	0.64494625	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			14.731	14.731	2;3	1.3214E-06	6458	DP1063-3	176.48	139.29			2.8033	2.008	NaN	1	0	Median	21212000	5023900	16188000	1902	362	1797	3902;3903	8718;8719;8720;8721	8720		4	9606
LFSMENWGGATFDVAMR	0	1	2 Oxidation (M)	1962.8604	0.86041834	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	0	2.5	0.5		1	1			21.379	21.379	2;3	0.00048178	13979	DP1063-2	75.877	66.875			1.498	1.1012	NaN	1	0	Median	35316000	9070100	26246000	1903	154	1798	3904;3905	8722;8723;8724	8723	186;187	3	9606
LFSMENWGGATFDVAMR	0	1	Oxidation (M)	1946.8655	0.86550371	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		2				22.628	22.628	2	0.00037338	15929	DP1063-2	149.69	118.96			1.7132	1.2528	6.1396	2	0	Median	41627000	15328000	26299000	1904	154	1798	3906;3907	8725;8726;8727;8728;8729;8730	8727	186;187	6	9606
LFSQGQDVSNK	1	0	Unmodified	1221.599	0.59896556	338	P55196	MLLT4	Afadin	yes	yes	0	0	0	1	0	1					15.247	15.247	2	0.0039813	4839	DP1063-1	104.42	54.39			NaN	NaN	NaN	0	0	Median	1497000	0	1497000	1905	338	1799	3908	8731;8732	8731		2	9606
LFTFHADICTLPDTEK	1	0	Unmodified	1906.9135	0.91349976	14	CON__P02769			yes	yes	0	0	0	2.6	1.02	1	1	2	1		20.235	20.235	2;3	2.178E-46	13931	DP1063-3	271.01	190.99		+	NaN	NaN	NaN	0	0	Median	295390000	295390000	0	1906	14	1800	3909;3910;3911;3912;3913	8733;8734;8735;8736;8737;8738;8739;8740;8741;8742;8743;8744	8741		12	9606
LFVGGIKEDTEEHHLR	1	1	Unmodified	1878.9588	0.95881047	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				2		15.959	15.959	3;4	0.0055853	7726	DP1063-4	82.483	0			NaN	NaN	NaN	0	0	Median	11931000	0	11931000	1907	197	1801	3914;3915	8745;8746	8745		2	9606
LFVGNLPADITEDEFKR	1	1	Unmodified	1963.0051	0.005091963	199	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	2	0		1				21.158	21.158	3	7.9508E-05	13653	DP1063-2	151.8	127.69			2.0169	1.8999	NaN	1	0	Median	27572000	10492000	17080000	1908	199	1802	3916	8747;8748;8749;8750	8747		4	9606
LFVTNDAATILR	0	1	Unmodified	1332.7402	0.74015049	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			20.561	20.561	2	6.7254E-05	14455	DP1063-3	159.79	107.84			5.0677	3.756	NaN	1	0	Median	28133000	4351500	23781000	1909	319	1803	3917	8751;8752;8753	8752		3	9606
LGEHNIDVLEGNEQFINAAK	1	0	Unmodified	2210.0968	0.096760517	10	CON__P00761			yes	yes	0	0	0	2.81	1.37	27	24	26	22	17	31.032	31.032	2;3	9.3833E-12	21021	DP1063-2	150.23	129.63		+	NaN	NaN	NaN	0	0	Median	162100000	162100000	0	1910	10	1804	3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033	8754;8755;8756;8757;8758;8759;8760;8761;8762;8763;8764;8765;8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783;8784;8785;8786;8787;8788;8789;8790;8791;8792;8793;8794;8795;8796;8797;8798;8799;8800;8801;8802;8803;8804;8805;8806;8807;8808;8809;8810;8811;8812;8813;8814;8815;8816;8817;8818;8819;8820;8821;8822;8823;8824;8825;8826;8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837;8838;8839;8840;8841;8842;8843;8844;8845;8846;8847;8848;8849;8850;8851;8852;8853;8854;8855;8856;8857;8858;8859;8860;8861;8862;8863;8864;8865;8866;8867;8868;8869;8870;8871;8872;8873;8874;8875;8876;8877;8878;8879;8880;8881;8882;8883;8884;8885;8886;8887;8888;8889;8890;8891;8892;8893;8894;8895;8896;8897;8898;8899;8900;8901;8902;8903;8904;8905;8906;8907;8908;8909;8910;8911;8912;8913;8914;8915;8916;8917;8918;8919;8920;8921;8922;8923;8924;8925;8926;8927;8928;8929;8930;8931;8932;8933;8934;8935;8936	8818		183	
LGEYGFQNALIVR	0	1	Unmodified	1478.7882	0.78816332	14	CON__P02769			yes	yes	0	0	0	2.41	0.726	3	26	18	1	1	26.396	26.396	2;3	1.879E-34	11744	DP1063-1	256.24	196.31		+	NaN	NaN	NaN	0	0	Median	506770000	506770000	0	1911	14	1805	4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062;4063;4064;4065;4066;4067;4068;4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082	8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974;8975;8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996;8997;8998;8999;9000;9001	8937		65	9606
LGFAGLVQEISFGTTK	1	0	Unmodified	1666.893	0.89302232	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			24.088	24.088	2	6.5717E-11	18944	DP1063-3	199.12	128.72			NaN	NaN	NaN	0	0	Median	13876000	0	13876000	1912	301	1806	4083	9002;9003	9002		2	9606
LGGAVLSFSEATSSVQK	1	0	Unmodified	1679.873	0.87301516	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					19.968	19.968	2	0.02348	10298	DP1063-1	80.522	39.807			NaN	NaN	NaN	0	0	Median	0	0	0	1913	222	1807	4084	9004	9004		1	9606
LGGIGQFLAK	1	0	Unmodified	1002.5862	0.58621603	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				20.098	20.098	2	0.026034	12286	DP1063-2	67.494	34.653			1.0702	0.89535	NaN	1	0	Median	6545000	1812900	4732100	1914	452	1808	4085	9005	9005		1	9606
LGGIPVGVIAVETR	0	1	Unmodified	1379.8136	0.81364979	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.899	20.899	2	0.001716	11426	DP1063-1	127.83	114.38			1.1437	0.90232	NaN	1	0	Median	6883100	3195300	3687700	1915	43	1809	4086	9006;9007	9006		2	9606
LGGIPVGVVAVETR	0	1	Unmodified	1365.798	0.79799972	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.46	0.929	10	1	1	1		23.861	23.861	2	3.8718E-05	10444	DP1063-1	163.9	112.45			1.3308	1.1382	14.426	5	0	Median	990840000	433070000	557770000	1916	460	1810	4087;4088;4089;4090;4091;4092;4093;4094;4095;4096;4097;4098;4099	9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042;9043;9044	9009		37	9606
LGGSPFGPAGTGK	1	0	Unmodified	1144.5877	0.58767259	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					17.124	17.124	2	0.0030079	6806	DP1063-1	97.597	64.846			2.2865	1.8226	NaN	1	0	Median	3977700	1337100	2640600	1917	487	1811	4100	9045;9046	9045		2	9606
LGGTIDDCELVEGLVLTQK	1	0	Unmodified	2059.0507	0.050721527	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			22.965	22.965	2	0.048328	17556	DP1063-3	73.415	4.9514			NaN	NaN	NaN	0	0	Median	0	0	0	1918	320	1812	4101	9047	9047		1	9606
LGIHEDSTNRR	0	2	Unmodified	1296.6535	0.65346075	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	2	0		1				12.815	12.815	3	0.003196	2695	DP1063-2	68.626	68.626			2.4465	2.2782	NaN	1	0	Median	8760400	2420700	6339800	1919	135	1813	4102	9048;9049	9049		2	9606
LGIYTVLFER	0	1	Unmodified	1209.6758	0.67575932	440	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		22.963	22.963	2	1.0966E-05	16859	DP1063-4	140.35	140.35			1.6768	1.0843	NaN	1	0	Median	6327800	1997100	4330700	1920	440	1814	4103	9050;9051	9050		2	9606
LGLDYEER	0	1	Unmodified	993.47673	0.47672516	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		17.405	17.405	2	0.013914	9710	DP1063-4	104.75	63.968			1.8256	1.1909	NaN	1	0	Median	14469000	4935300	9533800	1921	598	1815	4104	9052;9053	9052		2	9606
LGMLSPEGTCK	1	0	Oxidation (M)	1207.5577	0.55769437	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	1	0	1					15.471	15.471	2	0.033074	5070	DP1063-1	55.084	32.745			2.2285	1.7482	NaN	1	0	Median	4648400	1385900	3262600	1922	303	1816	4105	9054	9054	360	0	9606
LGNPIVPLNIR	0	1	Unmodified	1204.7292	0.72919187	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.249	20.249	2	0.0016557	10646	DP1063-1	124.08	80.445			NaN	NaN	NaN	0	0	Median	3311500	0	3311500	1923	420	1817	4106	9055;9056	9056		2	9606
LGSTVFVANLDYK	1	0	Unmodified	1425.7504	0.75038083	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2.5	0.5		1	1			20.323	20.323	2	0.016912	12615	DP1063-2	79.036	56.023			1.211	0.99255	42.58	2	0	Median	54594000	27113000	27481000	1924	323	1818	4107;4108	9057;9058;9059;9060;9061;9062	9058		6	9606
LGTLSALDILIK	1	0	Unmodified	1255.7751	0.77513901	548	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				23.519	23.519	2	0.012557	16679	DP1063-2	89.171	59.404			NaN	NaN	NaN	0	0	Median	0	0	0	1925	548	1819	4109	9063	9063		1	9606
LGTPELSTAER	0	1	Unmodified	1172.6037	0.60371659	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1.6	2	1	1	1	2	16.812	16.812	2	0.0010691	8833	DP1063-3	114.4	69.32			1.2556	1.2458	16.734	4	0	Linear	658360000	296980000	361380000	1926	460	1820	4110;4111;4112;4113;4114;4115;4116	9064;9065;9066;9067;9068;9069;9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083;9084	9076		21	9606
LGTPELSTAERK	1	1	Unmodified	1300.6987	0.69867961	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					15.182	15.182	2;3	0.00019762	4692	DP1063-1	110.08	81.9			1.3785	1.2853	3.2478	2	0	Median	40207000	16755000	23452000	1927	460	1821	4117;4118	9085;9086;9087;9088;9089;9090;9091;9092	9085		8	9606
LGTPQQIAIAR	0	1	Unmodified	1166.6772	0.6771563	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				17.286	17.286	2	0.020829	8403	DP1063-2	70.908	70.908			1.2355	0.8932	NaN	1	0	Median	18522000	8048300	10473000	1928	543;581	1822	4119	9093;9094	9093		2	9606
LGVIEDHSNR	0	1	Unmodified	1138.5731	0.57308516	169	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	2	0		1				14.323	14.323	2	0.05286	4485	DP1063-2	76.221	28.262			NaN	NaN	NaN	0	0	Median	3745100	0	3745100	1929	169	1823	4120	9095	9095		1	9606
LGVQTVAVYSEADR	0	1	Unmodified	1506.7678	0.7678218	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	1.12		1	1	1	1	18.505	18.505	2	2.5093000000000002E-20	10103	DP1063-2	220.5	191.7			1.4026	1.0806	14.386	4	0	Median	239570000	97628000	141940000	1930	595	1824	4121;4122;4123;4124	9096;9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107;9108	9097		13	9606
LHDSSGSQVGTGFK	1	0	Unmodified	1418.679	0.6790068	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	0	1					14.404	14.404	2	0.00086688	3873	DP1063-1	121.36	76.224			NaN	NaN	NaN	0	0	Median	0	0	0	1931	314	1825	4125	9109	9109		1	9606
LHFFMPGFAPLTSR	0	1	Oxidation (M)	1635.8232	0.82316861	414;129;480	P07437;A6NNZ2;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.8	0.748			2	2	1	20.793	20.793	2;3	0.00015949	14218	DP1063-4	141.38	141.38			1.939	1.4477	14.593	4	0	Median	324670000	109530000	215150000	1932	129;414;480	1826	4126;4127;4128;4129;4130	9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123;9124;9125;9126;9127	9123	127	18	9606
LHFFMPGFAPLTSR	0	1	Unmodified	1619.8283	0.82825399	414;129;480	P07437;A6NNZ2;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.5	0.5			2	2		22.206	22.206	2;3	0.00031157	16004	DP1063-4	88.101	56.274			1.917	1.538	16.477	3	0	Plateau	139340000	45479000	93864000	1933	129;414;480	1826	4131;4132;4133;4134	9128;9129;9130;9131;9132;9133;9134;9135;9136;9137;9138;9139	9137		12	9606
LHLSGIDANPNALFPPVEFPAPR	0	1	Unmodified	2471.2961	0.29612903	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				22.563	22.563	3	1.0893E-07	15469	DP1063-2	100.47	100.47			1.5354	1.1177	NaN	1	0	Median	25601000	11227000	14374000	1934	303	1827	4135;4136	9140;9141;9142	9141		3	9606
LHLSSPDNFR	0	1	Unmodified	1184.5938	0.5938206	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				16.58	16.58	2	0.00048298	7462	DP1063-2	141.39	90.329			NaN	NaN	NaN	0	0	Median	13783000	0	13783000	1935	654	1828	4137	9143;9144	9143		2	9606
LHPVILASIVDSYER	0	1	Unmodified	1710.9305	0.93047046	38	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	4	0				2		21.272	21.272	2;3	0.0003164	14852	DP1063-4	111.83	111.83			2.4881	1.6308	NaN	1	0	Median	7903400	1476400	6427000	1936	38	1829	4138;4139	9145;9146	9145		2	9606
LHYCVSCAIHSK	1	0	Unmodified	1473.6857	0.68568885	392	Q5JNZ5;P62854	RPS26P11;RPS26	Putative 40S ribosomal protein S26-like 1;40S ribosomal protein S26	yes	no	0	0	0	5	0					1	14.887	14.887	3	0.00022548	7007	DP1063-5	109.72	86.241			2.3098	1.9552	NaN	1	0	Median	12289000	4560800	7728600	1937	392	1830	4140	9147;9148	9148		2	9606
LHYNEGLNIK	1	0	Unmodified	1199.6299	0.62987176	273	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	0	4	0				1		16.162	16.162	2	0.015822	8138	DP1063-4	90.15	38.296			NaN	NaN	NaN	0	0	Median	3002900	0	3002900	1938	273	1831	4141	9149;9150	9150		2	9606
LIALLEVLSQK	1	0	Unmodified	1225.7646	0.76457433	190;70	P21333;Q14315;O75369	FLNA;FLNC;FLNB	Filamin-A;Filamin-C;Filamin-B	no	no	0	0	0	2	0		1				23.988	23.988	2	0.0059317	17295	DP1063-2	98.249	42.879			NaN	NaN	NaN	0	0	Median	6657400	0	6657400	1939	190;70	1832	4142	9151	9151		1	9606
LIAPVAEEEATVPNNK	1	0	Unmodified	1693.8887	0.88866522	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		17.899	17.899	2	2.2186E-09	10303	DP1063-4	190.26	168.59			1.7963	1.2433	NaN	1	0	Median	30467000	9768600	20699000	1940	127	1833	4143	9152;9153;9154;9155	9154		4	9606
LIASYCNVGDIEGASK	1	0	Unmodified	1695.8138	0.81378572	279	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	2	0		1				18.755	18.755	2	0.039249	10422	DP1063-2	73.632	34.881			NaN	NaN	NaN	0	0	Median	0	0	0	1941	279	1834	4144	9156	9156		1	9606
LICCDILDVLDK	1	0	Unmodified	1475.7364	0.73638702	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				1		23.276	23.276	2	0.010443	17239	DP1063-4	89.171	56.756			NaN	NaN	NaN	0	0	Median	2502200	0	2502200	1942	371	1835	4145	9157;9158	9158		2	9606
LIDFLECGK	1	0	Unmodified	1093.5478	0.54778161	178	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.63	20.63	2	0.014273	14520	DP1063-3	139.97	52.216			NaN	NaN	NaN	0	0	Median	0	0	0	1943	178	1836	4146	9159	9159		1	9606
LIDLHSPSEIVK	1	0	Unmodified	1349.7555	0.7554662	351	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					1	18.027	18.027	3	0.00036998	10802	DP1063-5	102.05	60.567			1.5597	1.3203	NaN	1	0	Median	31920000	12420000	19500000	1944	351	1837	4147	9160;9161;9162	9162		3	9606
LIEDTEDWRPR	0	2	Unmodified	1428.6997	0.69974224	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	1	3	0			1			17.427	17.427	3	0.0053364	10079	DP1063-3	89.08	46.744			NaN	NaN	NaN	0	0	Median	15205000	0	15205000	1945	582	1838	4148	9163;9164	9164		2	9606
LIEVDDER	0	1	Unmodified	987.48729	0.48728985	385	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		15.981	15.981	2	0.005807	7873	DP1063-4	120.46	71.098			2.382	1.6983	NaN	1	0	Median	29016000	9228800	19787000	1946	385	1839	4149	9165;9166;9167;9168	9166		4	9606
LIEVNGVDLVGK	1	0	Unmodified	1254.7184	0.71835242	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				20.032	20.032	2	0.008194	12201	DP1063-2	93.111	63.301			NaN	NaN	NaN	0	0	Median	5237500	0	5237500	1947	558	1840	4150	9169	9169		1	9606
LIGEYGLR	0	1	Unmodified	919.51272	0.51271674	291	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	17.995	17.995	2	0.010985	10759	DP1063-5	110.61	54.101			2.4492	1.8292	NaN	1	0	Median	47167000	13632000	33535000	1948	291	1841	4151	9170;9171	9170		2	9606
LIINSLYK	1	0	Unmodified	962.58007	0.58006802	169	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	0		1				19.171	19.171	2	0.020667	10969	DP1063-2	94.662	46.919			2.7474	2.2985	NaN	1	0	Median	18776000	5485200	13291000	1949	169	1842	4152	9172;9173	9172		2	9606
LILIESR	0	1	Unmodified	842.52255	0.52255314	375	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	18.128	18.128	2	0.043689	10909	DP1063-5	92.467	20.752			2.5421	1.8986	NaN	1	0	Median	61515000	17738000	43777000	1950	375	1843	4153	9174;9175	9174		2	9606
LILPVGPAGGNQMLEQYDK	1	0	Oxidation (M)	2058.0456	0.045576569	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	0	5	0					1	20.385	20.385	2	0.017273	13852	DP1063-5	105	72.504			NaN	NaN	NaN	0	0	Median	0	0	0	1951	192	1844	4154	9176	9176	242	1	9606
LILPVGPAGGNQMLEQYDKLQDGSIK	2	0	Oxidation (M)	2799.4477	0.44768022	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	5	0					1	20.524	20.524	3	2.7912E-13	14023	DP1063-5	152.38	135.02			1.0223	0.99892	NaN	1	0	Median	46300000	24163000	22137000	1952	192	1845	4155	9177;9178;9179;9180	9177	242	4	9606
LILSETSIFDVLPNFFYHSNQVVR	0	1	Unmodified	2837.4752	0.4752156	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					25.949	25.949	3	1.4218E-11	16871	DP1063-1	165.06	165.06			1.1745	0.93123	NaN	1	0	Median	12052000	5574200	6477900	1953	460	1846	4156	9181;9182;9183;9184;9185;9186;9187;9188;9189	9184		9	9606
LISQIVSSITASLR	0	1	Unmodified	1486.8719	0.87189295	413;605	P68363;P68366;Q9H853;Q9BQE3	TUBA1B;TUBA4A;TUBA4B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain	no	no	0	0	0	3.17	1.34	1	1	1	2	1	24.416	24.416	2;3	3.1729000000000003E-20	19319	DP1063-3	254.19	254.19			1.6993	1.3706	16.473	3	0	Plateau	108490000	43786000	64708000	1954	413;605	1847	4157;4158;4159;4160;4161;4162	9190;9191;9192;9193;9194;9195;9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206	9196		17	9606
LISWYDNEFGYSNR	0	1	Unmodified	1762.7951	0.79509919	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4.5	0.5				1	1	21.644	21.644	2	4.1564E-99	15326	DP1063-4	315.5	315.5			2.7556	2.134	NaN	1	0	Median	58070000	15665000	42405000	1955	102	1848	4163;4164	9207;9208;9209;9210;9211	9210		5	9606
LITDLQDQNQK	1	0	Unmodified	1314.6779	0.67794416	243	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	2	0		1				16.364	16.364	2	0.011464	7242	DP1063-2	91.867	30.956			NaN	NaN	NaN	0	0	Median	0	0	0	1956	243	1849	4165	9212	9212		1	9606
LITEDVQGK	1	0	Unmodified	1001.5393	0.53932542	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		15.34	15.34	2	0.048414	7036	DP1063-4	71.877	20.542			2.0249	1.4016	NaN	1	0	Median	20149000	6589600	13560000	1957	355	1850	4166	9213	9213		0	9606
LITQTFSHHNQLAQK	1	0	Unmodified	1764.9271	0.92711641	663	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				2		15.134	15.134	2;3	0.00030856	6720	DP1063-4	112.44	112.44			7.9356	5.4928	NaN	1	0	Median	35175000	3219400	31956000	1958	663	1851	4167;4168	9214;9215;9216;9217	9215		4	9606
LITTQQWLIK	1	0	Unmodified	1242.7336	0.73360855	96	P00846	MT-ATP6	ATP synthase subunit a	yes	yes	0	0	0	5	0					1	20.415	20.415	2	0.0029045	13937	DP1063-5	110.81	63.065			NaN	NaN	NaN	0	0	Median	3857100	0	3857100	1959	96	1852	4169	9218	9218		1	9606
LITYGSDR	0	1	Unmodified	923.47125	0.47124585	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		15.424	15.424	2	5.1228E-11	7353	DP1063-3	166.05	107.88			1.4999	1.3913	15.547	3	0	Plateau	491240000	193850000	297390000	1960	110	1853	4170;4171;4172	9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229	9225		11	9606
LITYGSDRTEALK	1	1	Unmodified	1465.7777	0.77765821	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			16.065	16.065	3	0.0091293	8229	DP1063-3	72.731	53.454			1.4717	1.3348	NaN	1	0	Median	24827000	9833800	14994000	1961	110	1854	4173	9230;9231;9232;9233	9231		4	9606
LIVDEAINEDNSVVSLSQPK	1	0	Unmodified	2169.1165	0.11649291	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				20.882	20.882	2	0.0011389	13328	DP1063-2	112.62	75.03			NaN	NaN	NaN	0	0	Median	4363700	0	4363700	1962	337	1855	4174	9234	9234		1	9606
LKDDEVAQLKK	3	0	Unmodified	1285.7242	0.72416608	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	2	4	0				1		13.898	13.898	3	0.0012368	5172	DP1063-4	94.82	62.49			2.289	2.3941	NaN	1	0	Median	10738000	3613600	7124200	1963	127	1856	4175	9235;9236;9237	9237		3	9606
LKECCDKPLLEK	3	0	Unmodified	1531.7738	0.77383516	14	CON__P02769			yes	yes	0	0	2	2.38	0.992	2	2	3	1		14.18	14.18	2;3;4	1.1084E-07	5663	DP1063-3	188.48	132.39		+	NaN	NaN	NaN	0	0	Median	348100000	348100000	0	1964	14	1857	4176;4177;4178;4179;4180;4181;4182;4183	9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252;9253;9254	9249		17	9606
LKEELEEAR	1	1	Unmodified	1115.5823	0.58225287	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	no	0	0	1	1	0	1					14.257	14.257	2	0.01146	3697	DP1063-1	88.37	49.065			5.2854	4.9281	NaN	1	0	Median	2486400	403340	2083100	1965	442	1858	4184	9255;9256	9255		2	9606
LKEREEFLIPIYHQVAVQFADLHDTPGR	1	2	Unmodified	3320.7306	0.73059544	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	2	0		1				21.492	21.492	5	0.043784	14233	DP1063-2	28.047	12.437			0.87592	0.9938	NaN	1	0	Median	21976000	12334000	9641900	1966	460	1859	4185	9257	9257		1	9606
LKEVFSMAGVVVR	1	1	Oxidation (M)	1449.8014	0.80137054	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	1	3	0			1			17.525	17.525	3	0.043404	10285	DP1063-3	59.225	36.444			NaN	NaN	NaN	0	0	Median	11082000	11082000	0	1967	323	1860	4186	9258	9258	394	1	9606
LKGDDLQAIKK	3	0	Unmodified	1227.7187	0.71868677	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	2	4	0				1		13.996	13.996	3	0.0017175	5259	DP1063-4	90.913	40.461			1.4945	1.5632	NaN	1	0	Median	12352000	4748500	7603400	1968	133	1861	4187	9259;9260;9261	9260		3	9606
LKGSGNLEAIHIIK	2	0	Unmodified	1491.8773	0.87731267	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	3	0			1			16.754	16.754	3	0.00036061	9199	DP1063-3	124.81	68.452			NaN	NaN	NaN	0	0	Median	15841000	0	15841000	1969	419	1862	4188	9262;9263	9262		2	9606
LKHLVDEPQNLIK	2	0	Unmodified	1545.8879	0.88787736	14	CON__P02769			yes	yes	0	0	1	3	0			2			16.552	16.552	2;3	2.5424E-05	8891	DP1063-3	156	105.54		+	NaN	NaN	NaN	0	0	Median	53890000	53890000	0	1970	14	1863	4189;4190	9264;9265;9266;9267	9265		4	9606
LKLEPHEGLLLR	1	1	Unmodified	1416.8453	0.84528426	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	2	0		1				17.613	17.613	3	0.0018645	8851	DP1063-2	95.618	89.67			1.6317	1.5371	NaN	1	0	Median	29454000	11419000	18035000	1971	134	1864	4191	9268;9269	9268		2	9606
LKPDPNTLCDEFK	2	0	Unmodified	1575.7603	0.76029359	14	CON__P02769			yes	yes	0	0	1	2.67	0.471		1	2			17.932	17.932	2;3	9.7741E-06	10653	DP1063-3	135.94	104.06		+	NaN	NaN	NaN	0	0	Median	176710000	176710000	0	1972	14	1865	4192;4193;4194	9270;9271;9272;9273;9274	9273		5	9606
LKPDPNTLCDEFKADEK	3	0	Unmodified	2018.9619	0.96190652	14	CON__P02769			yes	yes	0	0	2	2.62	0.857	1	2	4	1		17.634	17.634	2;3;4	1.8067E-05	10252	DP1063-3	181.26	129.65		+	NaN	NaN	NaN	0	0	Median	509990000	509990000	0	1973	14	1866	4195;4196;4197;4198;4199;4200;4201;4202	9275;9276;9277;9278;9279;9280;9281;9282;9283;9284;9285;9286	9282		12	9606
LKYENEVALR	1	1	Unmodified	1233.6717	0.67173657	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.29	1.03	2	2	2	1		16.119	16.119	2;3	9.6877E-05	6890	DP1063-2	134.57	105.27		+	NaN	NaN	NaN	0	0	Median	251260000	251260000	0	1974	19	1867	4203;4204;4205;4206;4207;4208;4209	9287;9288;9289;9290;9291;9292;9293;9294;9295;9296;9297;9298;9299;9300	9293		14	9606
LLACIASRPGQCGR	0	2	Unmodified	1557.7868	0.78679988	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	15.877	15.877	3	0.006414	8149	DP1063-5	73.435	38.475			1.2816	1.0905	NaN	1	0	Median	14910000	6731700	8178600	1975	368	1868	4210	9301;9302	9302		2	9606
LLADQAEAR	0	1	Unmodified	985.51926	0.51925868	424	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	5	0					1	14.767	14.767	2	0.0001442	6800	DP1063-5	130.22	58.878			1.6035	1.1976	NaN	1	0	Median	34137000	12990000	21147000	1976	424	1869	4211	9303;9304;9305;9306	9304		4	9606
LLCGLLAER	0	1	Unmodified	1043.5798	0.57975045	167	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	5	0					1	19.867	19.867	2	1.8374E-10	13142	DP1063-5	169.06	88.599			2.2013	1.644	NaN	1	0	Median	78298000	23732000	54566000	1977	167	1870	4212	9307;9308;9309;9310	9307		4	9606
LLDAVDTYIPVPAR	0	1	Unmodified	1541.8453	0.84534384	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		21.5	21.5	2	0.0009258	15180	DP1063-4	122.47	42.982			NaN	NaN	NaN	0	0	Median	4393400	0	4393400	1978	306	1871	4213	9311;9312	9311		2	9606
LLDFGSLSNLQVTQPTVGMNFK	1	0	Oxidation (M)	2424.2359	0.23589654	137	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	5	0					1	23.032	23.032	2	0.00013476	17002	DP1063-5	137.73	113.01			NaN	NaN	NaN	0	0	Median	3638600	0	3638600	1979	137	1872	4214	9313;9314	9314	147	2	9606
LLDMDGIIVEK	1	0	Unmodified	1244.6686	0.66862503	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	4	0				1		26.652	26.652	2	0.014005	20846	DP1063-4	85.161	29.791			NaN	NaN	NaN	0	0	Median	951280	0	951280	1980	483	1873	4215	9315;9316	9315		2	9606
LLEAKQEKSMYGVYNTFTTEER	2	1	Oxidation (M)	2652.2741	0.27413253	534	Q6IQ21	ZNF770	Zinc finger protein 770	yes	yes	0	1	2	1	0	1					21.539	21.539	3	0.018307	12154	DP1063-1	66.12	12.778			NaN	NaN	NaN	0	0	Median	1684600	0	1684600	1981	534	1874	4216	9317	9317	668	1	9606
LLEEALLR	0	1	Unmodified	955.57023	0.57023162	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.579	19.579	2	0.012575	9831	DP1063-1	107.43	18.787			1.8137	1.4416	NaN	1	0	Median	12481000	3456400	9024700	1982	420	1875	4217	9318;9319	9319		2	9606
LLEGEDAHLSSSQFSSGSQSSR	0	1	Unmodified	2308.0567	0.056746196	12	CON__P02533;P02533;CON__Q61782	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	3.5	0.5			1	1		17.078	17.078	3	1.6037E-05	9251	DP1063-4	121.14	100.18		+	NaN	NaN	NaN	0	0	Median	7403000	7403000	0	1983	12	1876	4218;4219	9320;9321	9321		2	9606
LLEGEECR	0	1	Unmodified	1004.4597	0.45969489	22;20;30	CON__P35908v2;P35908;CON__P35908;CON__Q01546;Q01546;CON__Q6NXH9;CON__P07744;Q7RTS7;CON__Q7RTS7;Q86Y46;CON__Q32MB2;P12036;CON__Q7RTT2;CON__Q8N1N4-2;Q8N1N4;CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7;CON__P50446	KRT2;KRT76;KRT74;KRT73;NEFH;KRT78;KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73;Neurofilament heavy polypeptide;Keratin, type II cytoskeletal 78;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	0	2	0.816	1	1	1			14.754	14.754	2	0.0017853	4313	DP1063-1	100.45	57.451		+	NaN	NaN	NaN	0	0	Median	29172000	29172000	0	1984	22;20;30	1877	4220;4221;4222	9322;9323;9324;9325;9326;9327	9322		6	9606
LLEGEESR	0	1	Unmodified	931.46108	0.4610751	15;136	CON__P05787;P05787;CON__Q9H552;CON__Q9DCV7;CON__Q3KNV1;CON__P08729;CON__Q9NSB2;CON__Q6ISB0;P08729;Q9NSB2;P08670;P41219;P17661	KRT8;KRT7;KRT84;VIM;PRPH;DES	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Vimentin;Peripherin;Desmin	no	no	0	0	0	3	0			1			14.341	14.341	2	0.0077328	5926	DP1063-3	116.9	58.122		+	3.2023	2.3159	NaN	1	0	Median	20457000	5624700	14833000	1985	15;136	1878	4223	9328;9329	9329		2	9606
LLEPVLLLGK	1	0	Unmodified	1093.7111	0.71108219	370	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	22.35	22.35	2	1.0748E-05	16160	DP1063-5	140.5	91.405			1.6942	1.4341	NaN	1	0	Median	32610000	11974000	20636000	1986	370	1879	4224	9330;9331;9332;9333	9330		4	9606
LLEQYKEESK	2	0	Unmodified	1265.6503	0.65033243	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				14.661	14.661	2	0.010123	4950	DP1063-2	128.27	64.79			NaN	NaN	NaN	0	0	Median	4835500	0	4835500	1987	429	1880	4225	9334;9335	9334		2	9606
LLEQYKEESKK	3	0	Unmodified	1393.7453	0.74529545	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	2	0		1				13.708	13.708	3	0.00067787	3738	DP1063-2	101.66	62.084			2.1235	2.3362	NaN	1	0	Median	16460000	5490800	10969000	1988	429	1881	4226	9336;9337;9338;9339	9337		4	9606
LLESLDQLELR	0	1	Unmodified	1327.7347	0.73473076	88	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	21.463	21.463	2	5.3139E-05	15195	DP1063-5	139.38	44.973			NaN	NaN	NaN	0	0	Median	11863000	0	11863000	1989	88	1882	4227	9340;9341	9340		2	9606
LLETESFQMNR	0	1	Oxidation (M)	1382.65	0.65001485	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				18.306	18.306	2	1.4774E-07	8365	DP1063-2	172.94	151.09			1.3717	1.3423	22.295	3	0	Plateau	662940000	282610000	380330000	1990	460	1883	4228;4229;4230	9342;9343;9344;9345;9346;9347;9348;9349;9350;9351;9352;9353;9354	9354	577	12	9606
LLETESFQMNR	0	1	Unmodified	1366.6551	0.65510023	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.681	18.681	2	8.2501E-14	8705	DP1063-1	199.7	161.89			1.1367	0.94706	43.814	2	0	Median	167350000	73532000	93816000	1991	460	1883	4231;4232;4233	9355;9356;9357;9358;9359	9355		5	9606
LLETTDRPDGHQNNLR	0	2	Unmodified	1877.9344	0.93438664	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	2	0		1				14.619	14.619	3	0.003337	4872	DP1063-2	70.373	53.974			2.1859	2.0355	NaN	1	0	Median	10551000	5052400	5498500	1992	495	1884	4234	9360;9361;9362	9360		3	9606
LLEVEHPAAK	1	0	Unmodified	1105.6132	0.61315906	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			14.716	14.716	2	0.0037246	6422	DP1063-3	97.635	42.105			3.8615	3.1008	NaN	1	0	Median	12843000	3007300	9835800	1993	179	1885	4235	9363;9364	9363		2	9606
LLEVQGSR	0	1	Unmodified	900.50288	0.50288033	365	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		15.365	15.365	2	0.0015144	7050	DP1063-4	152.47	82.472			NaN	NaN	NaN	0	0	Median	12862000	0	12862000	1994	365	1886	4236	9365;9366	9366		2	9606
LLEVQGSRPGK	1	1	Unmodified	1182.6721	0.67207093	365	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4.25	0.829			1	1	2	14.399	14.399	2;3	5.0149E-05	5762	DP1063-4	157.34	86.82			NaN	NaN	NaN	0	0	Median	57764000	0	57764000	1995	365	1887	4237;4238;4239;4240	9367;9368;9369;9370;9371;9372	9368		6	9606
LLGGVTIAQGGVLPNIQAVLLPK	1	0	Unmodified	2270.3726	0.37258843	174	P16104;Q96QV6;Q8IUE6	H2AFX;HIST1H2AA;HIST2H2AB	Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B	yes	no	0	0	0	2.5	1.5	1			1		24.82	24.82	2	0.00010544	15874	DP1063-1	116.19	113.09			NaN	NaN	NaN	0	0	Median	1200000	1200000	0	1996	174	1888	4241;4242	9373;9374;9375	9373		3	9606
LLGITKDSVMR	1	1	Oxidation (M)	1247.6908	0.69075746	675	Q9Y4G6	TLN2	Talin-2	yes	yes	0	1	1	4	0				1		25.051	25.051	2	0.014382	19141	DP1063-4	59.245	20.097			1.3167	1.2801	NaN	1	0	Median	2441300	1010800	1430500	1997	675	1889	4243	9376;9377;9378	9376	785	3	9606
LLGNTFVALSDLR	0	1	Unmodified	1417.7929	0.79291434	286	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	2	0		1				22.549	22.549	2	6.1926E-05	15505	DP1063-2	152.07	56.567			NaN	NaN	NaN	0	0	Median	2662100	0	2662100	1998	286	1890	4244	9379	9379		1	9606
LLGQFTLIGIPPAPR	0	1	Unmodified	1591.945	0.94499831	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.67	0.471		1	2			23.044	23.044	2;3	1.375E-20	17613	DP1063-3	216.91	216.91			1.3061	0.99427	4.6394	2	0	Median	44311000	18460000	25851000	1999	263	1891	4245;4246;4247	9380;9381;9382;9383;9384;9385;9386;9387;9388;9389	9385		10	9606
LLGWIQNK	1	0	Unmodified	970.56	0.56000128	190;70	P21333;Q14315;O75369	FLNA;FLNC;FLNB	Filamin-A;Filamin-C;Filamin-B	no	no	0	0	0	2	0		1				19.575	19.575	2	0.014255	11600	DP1063-2	99.384	50.025			NaN	NaN	NaN	0	0	Median	6477200	0	6477200	2000	190;70	1892	4248	9390;9391	9391		2	9606
LLHYLGHVMVNGPTTPIPVK	1	0	Oxidation (M)	2201.2031	0.20308026	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		3				18.306	18.306	2;3;4	9.2595E-18	9767	DP1063-2	197.51	197.51			1.0376	0.86806	5.0451	3	0	Plateau	352980000	162840000	190140000	2001	154	1893	4249;4250;4251	9392;9393;9394;9395;9396;9397;9398;9399;9400;9401;9402;9403	9397	188	12	9606
LLHYLGHVMVNGPTTPIPVK	1	0	Unmodified	2185.2082	0.20816564	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		3				18.939	18.939	2;3;4	4.9035E-08	10661	DP1063-2	164.93	164.93			1.0333	0.86451	14.938	3	0	Median	107440000	55495000	51943000	2002	154	1893	4252;4253;4254	9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414	9409		11	9606
LLIEMEQR	0	1	Oxidation (M)	1046.543	0.54303059	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	1	0	4	0				1		16.387	16.387	2	0.040257	8530	DP1063-4	66.073	21.626			2.8764	2.0342	NaN	1	0	Median	27220000	6912600	20308000	2003	162	1894	4255	9415;9416	9416	199	2	9606
LLIEMEQR	0	1	Unmodified	1030.5481	0.54811597	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		18.466	18.466	2	0.044181	11156	DP1063-4	77.282	40.887			3.1586	2.0679	NaN	1	0	Median	5930600	1495500	4435200	2004	162	1894	4256	9417	9417		1	9606
LLIHQSLAGGIIGVK	1	0	Unmodified	1517.9293	0.92934824	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.33	0.471			2	1		19.363	19.363	2;3	0.00032583	12766	DP1063-3	137.73	137.73			2.1436	1.7213	7.6555	2	0	Median	41098000	10588000	30511000	2005	362	1895	4257;4258;4259	9418;9419;9420;9421;9422;9423;9424	9419		7	9606
LLILMEAR	0	1	Oxidation (M)	973.56304	0.56303775	274	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	2	0		1				18.88	18.88	2	0.049403	10612	DP1063-2	86.953	41.236			NaN	NaN	NaN	0	0	Median	12146000	0	12146000	2006	274	1896	4260	9425	9425	328	1	9606
LLIVSNPVDILTYVAWK	1	0	Unmodified	1943.1132	0.11318585	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		26.461	26.461	2	0.011878	20734	DP1063-4	94.402	0			NaN	NaN	NaN	0	0	Median	1330800	0	1330800	2007	91	1897	4261	9426;9427	9427		2	9606
LLIYAILPDGEVVGDSAR	0	1	Unmodified	1900.0306	0.030578432	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	1	0	1					23.6	23.6	2	0.0051548	14531	DP1063-1	106.79	48.087		+	NaN	NaN	NaN	0	0	Median	0	0	0	2008	8	1898	4262	9428	9428		1	
LLLEAMDELEVAFNNTNVR	0	1	Unmodified	2190.0991	0.099068703	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					25.927	25.927	2;3	3.0421E-18	16936	DP1063-1	214.61	175.19			1.3584	1.1175	NaN	1	0	Median	5601700	1766000	3835700	2009	460	1899	4263;4264;4265	9429;9430;9431;9432	9431		4	9606
LLLEAMDELEVAFNNTNVR	0	1	Oxidation (M)	2206.094	0.093983325	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					23.29	23.29	2	0.00045711	14277	DP1063-1	124.51	92.807			NaN	NaN	NaN	0	0	Median	2545400	2545400	0	2010	460	1899	4266;4267	9433;9434;9435;9436	9435	578	4	9606
LLLEDLVK	1	0	Unmodified	941.57973	0.57973367	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1.29	1	1	2	1	1	21.623	21.623	2	6.3372E-11	12345	DP1063-1	163.34	58.141			1.4771	1.3558	1.5112	2	0	Median	504590000	247720000	256870000	2011	460	1900	4268;4269;4270;4271;4272;4273	9437;9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450	9438		14	9606
LLLEDLVKK	2	0	Unmodified	1069.6747	0.67469669	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.584	19.584	2	0.00053788	9832	DP1063-1	116.9	99.539			1.3403	1.347	NaN	1	0	Median	21299000	7991900	13307000	2012	460	1901	4274	9451;9452;9453	9451		3	9606
LLLGAGAVAYGVR	0	1	Unmodified	1258.7398	0.73975656	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		20.15	20.15	2	0.00067408	13390	DP1063-4	135.79	113.01			1.8321	1.2361	NaN	1	0	Median	18827000	6068500	12758000	2013	598	1902	4275	9454;9455;9456;9457	9456		4	9606
LLLNNDNLLR	0	1	Unmodified	1196.6877	0.68772099	328;295	P52907;P47755	CAPZA1;CAPZA2	F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2	no	no	0	0	0	4	0				1		19.986	19.986	2	0.00019272	13165	DP1063-4	136.27	72.849			NaN	NaN	NaN	0	0	Median	13759000	0	13759000	2014	328;295	1903	4276	9458;9459	9459		2	9606
LLLPGELAK	1	0	Unmodified	952.59572	0.59571809	66;126	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;A0A2R8Y619;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					1	19.423	19.423	2	0.0022294	12560	DP1063-5	118.74	44.768			1.4488	1.2264	NaN	1	0	Median	659870000	264730000	395130000	2015	66;126	1904	4277	9460;9461;9462;9463;9464;9465	9461		6	9606
LLLPWLEAR	0	1	Unmodified	1109.6597	0.65971533	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2	0		1				23.592	23.592	2	0.021488	16794	DP1063-2	79.474	79.474			1.7395	1.3169	NaN	1	0	Median	6810700	2193700	4617100	2016	428	1905	4278	9466	9466		1	9606
LLLQGEADQSLLTFIDK	1	0	Unmodified	1903.0302	0.030244081	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					24.1	24.1	2	0.0057049	15068	DP1063-1	99.941	58.85			NaN	NaN	NaN	0	0	Median	0	0	0	2017	420	1906	4279	9467	9467		1	9606
LLLQVQHASK	1	0	Unmodified	1135.6713	0.67134264	108;159;158	P05141;P12235;P12236	SLC25A5;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	3.6	1.36	1			3	1	15.613	15.613	2;3	1.9099E-07	7341	DP1063-4	168.26	168.26			1.9343	1.4268	4.8148	2	0	Median	39864000	13784000	26080000	2018	108;158;159	1907	4280;4281;4282;4283;4284	9468;9469;9470;9471;9472;9473;9474;9475;9476;9477	9474		10	9606
LLMIIHDRR	0	2	Oxidation (M)	1181.6703	0.67029679	117	P05556	ITGB1	Integrin beta-1	yes	yes	0	1	1	5	0					1	12.896	12.896	3	0.049024	4669	DP1063-5	60.118	9.9238			NaN	NaN	NaN	0	0	Median	1305000	0	1305000	2019	117	1908	4285	9478	9478	102	1	9606
LLMMAGIDDCYTSAR	0	1	2 Oxidation (M)	1747.7579	0.7579271	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	0	4	0				1		17.924	17.924	2	0.00032104	10373	DP1063-4	140.39	119.56			2.2346	1.4141	NaN	1	0	Median	11407000	4519800	6886800	2020	172	1909	4286	9479;9480;9481;9482	9481	221;222	4	9606
LLMMAGIDDCYTSAR	0	1	Oxidation (M)	1731.763	0.76301248	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	0	4	0				1		19.314	19.314	2	0.050846	12300	DP1063-4	85.288	45.708			NaN	NaN	NaN	0	0	Median	0	0	0	2021	172	1909	4287	9483	9483	221;222	1	9606
LLNNWLTYSK	1	0	Unmodified	1250.6659	0.66592292	593	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				20.82	20.82	2	0.01227	13263	DP1063-2	93.649	39.1			NaN	NaN	NaN	0	0	Median	5196500	0	5196500	2022	593	1910	4288	9484	9484		1	9606
LLNTFLER	0	1	Unmodified	1004.5655	0.56548059	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					19.684	19.684	2	0.015645	9982	DP1063-1	98.523	23.806			NaN	NaN	NaN	0	0	Median	3667800	0	3667800	2023	487	1911	4289	9485	9485		1	9606
LLQAETASNSAR	0	1	Unmodified	1259.647	0.64697839	496	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	0	1					14.723	14.723	2	0.0027215	4247	DP1063-1	109.79	62.084			NaN	NaN	NaN	0	0	Median	848930	0	848930	2024	496	1912	4290	9486;9487	9487		2	9606
LLQAFLER	0	1	Unmodified	988.57057	0.57056597	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				20.034	20.034	2	0.011136	12193	DP1063-2	110.31	52.751			1.5185	1.0961	NaN	1	0	Median	20158000	6869800	13288000	2025	336	1913	4291	9488;9489;9490;9491	9490		4	9606
LLQDFFNGK	1	0	Unmodified	1080.5604	0.56039521	153;176	P11142;P54652;P17066	HSPA8;HSPA2;HSPA6	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6	no	no	0	0	0	3	0			1			20.664	20.664	2	6.2891E-08	14571	DP1063-3	155.51	98.963			3.2678	2.6241	NaN	1	0	Median	56490000	14597000	41893000	2026	153;176	1914	4292	9492;9493;9494;9495	9493		4	9606
LLQDFFNGR	0	1	Unmodified	1108.5665	0.56654322	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			20.882	20.882	2	1.4885E-16	14807	DP1063-3	203.19	203.19			3.162	2.7251	NaN	1	0	Median	199250000	46715000	152530000	2027	149	1915	4293	9496;9497;9498;9499	9496		4	9606
LLQLVEDR	0	1	Unmodified	984.5604	0.56039521	178	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			18.466	18.466	2	0.0085772	11564	DP1063-3	107.29	37.296			NaN	NaN	NaN	0	0	Median	13853000	0	13853000	2028	178	1916	4294	9500;9501	9501		2	9606
LLQTDDEEEAGLLELLK	1	0	Unmodified	1927.999	0.99900353	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				24.098	24.098	2	0.00082499	17438	DP1063-2	116.96	48.521			NaN	NaN	NaN	0	0	Median	6962900	0	6962900	2029	336	1917	4295	9502	9502		1	9606
LLRDYQELMNTK	1	1	Oxidation (M)	1538.7763	0.776278	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	1	3	0			1			16.479	16.479	3	0.032989	8816	DP1063-3	64.104	41.949		+	NaN	NaN	NaN	0	0	Median	25834000	25834000	0	2030	101	1918	4296	9503;9504	9504	72	2	9606
LLREELQLLQEQGSYVGEVVR	0	2	Unmodified	2457.3227	0.32273771	367	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	1	4	0				1		22.439	22.439	3	0.00068611	16239	DP1063-4	108.37	66.685			NaN	NaN	NaN	0	0	Median	2682900	0	2682900	2031	367	1919	4297	9505	9505		1	9606
LLSITVR	0	1	Unmodified	800.51199	0.51198846	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.21	18.21	2	0.038216	8136	DP1063-1	95.793	18.947			NaN	NaN	NaN	0	0	Median	3131400	0	3131400	2032	420	1920	4298	9506	9506		1	9606
LLSNGHSAPEPR	0	1	Unmodified	1276.6524	0.65239812	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.67	0.943		2		1		13.615	13.615	2;3	1.8605E-05	3596	DP1063-2	144.55	93.274			71.856	62.714	NaN	1	0	Median	254500000	3322400	251180000	2033	524	1921	4299;4300;4301	9507;9508;9509;9510;9511;9512;9513;9514	9512		8	9606
LLSPFMPFVTEELFQR	0	1	Oxidation (M)	1969.0019	0.0019208405	217	P26640	VARS	Valine--tRNA ligase	yes	yes	0	1	0	2	0		1				24.944	24.944	2	0.016103	18434	DP1063-2	93.011	56.164			NaN	NaN	NaN	0	0	Median	1893000	0	1893000	2034	217	1922	4302	9515	9515	267	1	9606
LLSRPQDALEGVVLSPSLEAR	0	2	Unmodified	2249.2379	0.23794545	634	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	1	3	0			1			20.988	20.988	3	0.0010637	15024	DP1063-3	103.28	72.311			NaN	NaN	NaN	0	0	Median	7947200	0	7947200	2035	634	1923	4303	9516	9516		1	9606
LLTSFLPAQLLR	0	1	Unmodified	1370.8286	0.82857157	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2.5	0.5		1	1			23.747	23.747	2	0.00025468	18488	DP1063-3	152.11	98.618			1.9303	1.4416	2.0713	2	0	Median	64094000	20667000	43427000	2036	134	1924	4304;4305	9517;9518;9519;9520;9521;9522;9523;9524	9522		8	9606
LLVPLVPDLQDVAQLR	0	1	Unmodified	1788.0509	0.050919944	607	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	2	0		1				24.593	24.593	2	0.00098701	18041	DP1063-2	117.98	85.721			NaN	NaN	NaN	0	0	Median	1924600	0	1924600	2037	607	1925	4306	9525;9526	9525		2	9606
LLYAFAEATVPK	1	0	Unmodified	1321.7282	0.72818882	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	20.751	20.751	2	0.00050058	14725	DP1063-3	133.99	93.215			1.3159	1.0567	8.0909	3	0	Plateau	226380000	99331000	127050000	2038	111	1926	4307;4308;4309	9527;9528;9529;9530;9531;9532;9533;9534;9535;9536;9537	9530		11	9606
LLYNNVSNFGR	0	1	Unmodified	1295.6622	0.66223452	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					18.951	18.951	2	0.0032531	9047	DP1063-1	114.4	78.493			NaN	NaN	NaN	0	0	Median	0	0	0	2039	428	1927	4310	9538	9538		1	9606
LMELHGEGSSSGK	1	0	Oxidation (M)	1346.6136	0.61362935	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		13.03	13.03	3	0.00027161	4227	DP1063-4	100.38	100.38			2.422	1.6764	NaN	1	0	Median	11889000	3393400	8495900	2040	355	1928	4311	9539;9540;9541	9539	452	3	9606
LMELHGEGSSSGK	1	0	Unmodified	1330.6187	0.61871473	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		14.383	14.383	3	0.051446	5755	DP1063-4	53.6	25.423			NaN	NaN	NaN	0	0	Median	3867000	0	3867000	2041	355	1928	4312	9542	9542		1	9606
LMIEMDGTENK	1	0	2 Oxidation (M)	1311.5687	0.56865299	123	P06733	ENO1	Alpha-enolase	yes	yes	0	2	0	4	0				1		15.124	15.124	2	0.0099518	6792	DP1063-4	59.931	39.061			2.0058	1.3884	NaN	1	0	Median	5317400	2042000	3275300	2042	123	1929	4313	9543	9543	114;115	1	9606
LMIEMDGTENK	1	0	Oxidation (M)	1295.5737	0.57373837	123	P06733	ENO1	Alpha-enolase	yes	yes	0	1	0	4	0				1		15.965	15.965	2	0.025017	7940	DP1063-4	83.998	42.55			NaN	NaN	NaN	0	0	Median	1865200	0	1865200	2043	123	1929	4314	9544	9544	114;115	1	9606
LMQQLQDLEECR	0	1	Oxidation (M)	1577.7178	0.71777684	563	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	1	0	4	0				1		21.587	21.587	2	0.036764	15248	DP1063-4	57.859	17.135			1.1385	0.71362	NaN	1	0	Median	10579000	5205900	5373600	2044	563	1930	4315	9545;9546	9546	690	2	9606
LMSNALSTVTR	0	1	Oxidation (M)	1207.6231	0.62307182	638	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	1	0	4	0				1		16.398	16.398	2	0.032294	8441	DP1063-4	82.261	41.267			NaN	NaN	NaN	0	0	Median	4825000	0	4825000	2045	638	1931	4316	9547	9547	760	1	9606
LMTQDSWERLYQQTLR	0	2	Oxidation (M)	2083.0157	0.015673424	680	Q9Y5Y9	SCN10A	Sodium channel protein type 10 subunit alpha	yes	yes	0	1	1	5	0					1	25.403	25.403	2	0.0094109	19624	DP1063-5	59.542	59.542			4.7003	3.9996	NaN	1	0	Median	12212000	1637400	10575000	2046	680	1932	4317	9548	9548	788	1	9606
LNCQVIGASVDSHFCHLAWVNTPK	1	0	Unmodified	2752.3214	0.32137427	446	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	20.118	20.118	4	1.3797E-06	13564	DP1063-5	96.131	96.131			1.868	1.5813	NaN	1	0	Median	13315000	4380900	8933800	2047	446	1933	4318	9549;9550	9549		2	9606
LNDLEDALQQAKEDLAR	1	1	Unmodified	1940.9803	0.98033378	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3	0			1			22.147	22.147	3	0.00010149	16513	DP1063-3	206.43	144.36		+	NaN	NaN	NaN	0	0	Median	18130000	18130000	0	2048	101	1934	4319	9551;9552	9552		2	9606
LNDLEEALQQAK	1	0	Unmodified	1370.7042	0.70415892	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			1			19.84	19.84	2	0.00053107	13437	DP1063-3	129.88	72.328		+	NaN	NaN	NaN	0	0	Median	0	0	0	2049	22	1935	4320	9553	9553		1	9606
LNESTFDTQITK	1	0	Unmodified	1395.6882	0.6881745	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.761	17.761	2	2.9399E-05	7548	DP1063-1	141.1	70.154			NaN	NaN	NaN	0	0	Median	4413100	0	4413100	2050	420	1936	4321	9554;9555	9554		2	9606
LNFSHGTHEYHAETIK	1	0	Unmodified	1882.8962	0.89621022	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			1			14.834	14.834	3	0.0003299	6593	DP1063-3	139.66	125.38			2.3085	1.8537	NaN	1	0	Median	24513000	8430000	16083000	2051	168	1937	4322	9556;9557	9557		2	9606
LNIDSIIQR	0	1	Unmodified	1070.6084	0.60840804	260	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3	0			1			20.084	20.084	2	0.0017384	13780	DP1063-3	144.38	77.206			NaN	NaN	NaN	0	0	Median	16707000	0	16707000	2052	260	1938	4323	9558;9559	9558		2	9606
LNIISNLDCVNEVIGIR	0	1	Unmodified	1941.0353	0.035346234	234	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	3	0			1			23.737	23.737	2	0.00039136	18507	DP1063-3	131.32	63.443			NaN	NaN	NaN	0	0	Median	2242600	0	2242600	2053	234	1939	4324	9560;9561	9560		2	9606
LNIPVSQVNPR	0	1	Unmodified	1235.6986	0.69862003	107	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	yes	no	0	0	0	2	0		1				17.779	17.779	2	0.0098444	9064	DP1063-2	90.906	50.847			NaN	NaN	NaN	0	0	Median	10197000	0	10197000	2054	107	1940	4325	9562;9563	9562		2	9606
LNISYTR	0	1	Unmodified	865.46577	0.46576654	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.395	16.395	2	0.00052581	7298	DP1063-2	143.02	103.8			1.5261	1.3344	23.583	3	0	Plateau	357870000	145570000	212290000	2055	595	1941	4326;4327;4328	9564;9565;9566;9567;9568;9569;9570;9571;9572	9567		9	9606
LNLDSIIGR	0	1	Unmodified	999.57129	0.57129425	365	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4.5	0.5				1	1	20.906	20.906	2	0.00034132	14315	DP1063-4	132.57	61.224			NaN	NaN	NaN	0	0	Median	37645000	0	37645000	2056	365	1942	4329;4330	9573;9574;9575;9576	9573		4	9606
LNVTEQEK	1	0	Unmodified	959.49238	0.49237523	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		13.872	13.872	2	0.0049012	5134	DP1063-4	122.13	52.13			2.1678	1.5005	NaN	1	0	Median	8584700	3084100	5500600	2057	123	1943	4331	9577;9578;9579	9578		3	9606
LPAAGVGDMVMATVK	1	0	2 Oxidation (M)	1490.7473	0.74728606	388	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					1	17.08	17.08	2	0.00047899	9542	DP1063-5	128.36	112.99			2.3598	1.9975	NaN	1	0	Median	63783000	23352000	40431000	2058	388	1944	4332	9580;9581;9582;9583	9582	479;480	4	9606
LPAAGVGDMVMATVK	1	0	Oxidation (M)	1474.7524	0.75237144	388	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	1	0	5	0					1	18.768	18.768	2	0.0074126	11760	DP1063-5	99.539	67.321			NaN	NaN	NaN	0	0	Median	6296800	0	6296800	2059	388	1944	4333	9584;9585;9586	9585	479;480	3	9606
LPACVVDCGTGYTK	1	0	Unmodified	1539.7061	0.70614953	353	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	4	0				1		17.353	17.353	2	0.0011218	9634	DP1063-4	115	52.372			NaN	NaN	NaN	0	0	Median	0	0	0	2060	353	1945	4334	9587	9587		1	9606
LPCIYLVDSGGAYLPR	0	1	Unmodified	1792.9182	0.91819121	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.09	0.347			44	2	1	27.236	27.236	2;3	3.5372000000000004E-41	16715	DP1063-3	306.48	306.48			1.248	0.9753	11.832	8	0	Median	767960000	328710000	439250000	2061	624	1946	4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381	9588;9589;9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611;9612;9613;9614;9615;9616;9617;9618;9619;9620;9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636;9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652	9591		65	9606
LPEDPLLSGLLDSPALK	1	0	Unmodified	1776.9873	0.98731663	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				24.468	24.468	2	1.1021E-21	17862	DP1063-2	217.46	217.46			1.7108	1.3759	23.853	2	0	Median	14333000	5093200	9239900	2062	303	1947	4382;4383	9653;9654;9655;9656;9657;9658;9659;9660	9659		8	9606
LPEGSSGLSSYTPK	1	0	Unmodified	1421.7038	0.70382456	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.75	0.829		2	1	1		17.397	17.397	2	0.00012892	8437	DP1063-2	169.65	117.7			NaN	NaN	NaN	0	0	Median	351230000	0	351230000	2063	524	1948	4384;4385;4386;4387	9661;9662;9663;9664;9665;9666;9667	9661		7	9606
LPELLLK	1	0	Unmodified	824.53714	0.53714057	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			19.946	19.946	2	0.0023273	10230	DP1063-1	132.96	10.806			1.2032	1.1952	18.664	3	0	Plateau	518980000	234010000	284970000	2064	460	1949	4388;4389;4390	9668;9669;9670;9671;9672;9673;9674	9671		7	9606
LPFPIIDDR	0	1	Unmodified	1084.5917	0.59169534	229	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	5	0					1	21.217	21.217	2	0.005705	14918	DP1063-5	105.14	64.107			1.0836	0.80928	NaN	1	0	Median	9738600	4216000	5522700	2065	229	1950	4391	9675;9676;9677;9678	9677		4	9606
LPFTPLSYIQGLSHR	0	1	Unmodified	1727.9359	0.93589019	653	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	0	0	0	5	0					1	22.694	22.694	3	0.00041732	16631	DP1063-5	141.59	119.09			1.3608	1.0163	NaN	1	0	Median	5227500	1832600	3394900	2066	653	1951	4392	9679;9680	9679		2	9606
LPGGNEIGMVAWK	1	0	Oxidation (M)	1386.6966	0.69657112	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.25	0.433	3	1				21.297	21.297	2	2.0188E-05	11288	DP1063-2	163.84	134.06			1.2786	1.0662	10.079	4	0	Median	616200000	277500000	338690000	2067	460	1952	4393;4394;4395;4396	9681;9682;9683;9684;9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696	9696	579	16	9606
LPGGNEIGMVAWK	1	0	Unmodified	1370.7017	0.70165649	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				20.545	20.545	2	9.4458E-20	10973	DP1063-1	215.04	215.04			1.342	1.1794	11.487	2	0	Median	160220000	71291000	88930000	2068	460	1952	4397;4398	9697;9698;9699;9700;9701;9702	9697		6	9606
LPIGDVATQYFADR	0	1	Unmodified	1564.7886	0.78855725	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			21.49	21.49	2	5.627E-11	15624	DP1063-3	199.03	166.08			NaN	NaN	NaN	0	0	Median	27239000	0	27239000	2069	601	1953	4399	9703;9704	9703		2	9606
LPIGDVATQYFADRDMFCAGR	0	2	Unmodified	2402.1147	0.11473554	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	3	0			1			22.256	22.256	3	0.011732	16677	DP1063-3	78.234	37.032			NaN	NaN	NaN	0	0	Median	4762400	0	4762400	2070	601	1954	4400	9705	9705		1	9606
LPLISGFYK	1	0	Unmodified	1036.5957	0.59571809	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.17	21.17	2	0.023737	11781	DP1063-1	77.923	77.923			1.9699	1.5427	NaN	1	0	Median	4725700	1569500	3156100	2071	420	1955	4401	9706	9706		1	9606
LPLQDVYK	1	0	Unmodified	974.54368	0.54368251	412	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3.5	0.5			1	1		18.03	18.03	2	0.015643	10393	DP1063-4	101.28	38.626			2.2166	1.5342	NaN	1	0	Median	129780000	51886000	77894000	2072	412	1956	4402;4403	9707;9708;9709;9710	9708		4	9606
LPNFGFVVFDDSEPVQK	1	0	Unmodified	1936.9571	0.95707914	467	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			1			23.612	23.612	2	0.00052958	18372	DP1063-3	144.51	93.494			NaN	NaN	NaN	0	0	Median	8694000	0	8694000	2073	467	1957	4404	9711;9712	9712		2	9606
LPNGLVIASLENYSPVSR	0	1	Unmodified	1928.0367	0.036726442	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		22.755	22.755	2	0.00027147	16652	DP1063-4	130.61	107.14			1.295	0.87496	NaN	1	0	Median	5026400	2316200	2710200	2074	198	1958	4405	9713;9714	9713		2	9606
LPPLPLTLALGAFLNHR	0	1	Unmodified	1842.088	0.087974152	90	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	4	0				1		25.845	25.845	3	0.00014275	20095	DP1063-4	114.31	109.99			1.2873	0.95103	NaN	1	0	Median	3142900	1150900	1992000	2075	90	1959	4406	9715;9716	9715		2	9606
LPPNTNDEVDEDPTGNK	1	0	Unmodified	1853.8279	0.82791546	509	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	2					15.851	15.851	2	0.0055766	5495	DP1063-1	100.73	50.276			NaN	NaN	NaN	0	0	Median	0	0	0	2076	509	1960	4407;4408	9717;9718	9717		2	9606
LPRPPPPEMPESLK	1	1	Oxidation (M)	1602.844	0.84396364	426	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	1	4	0				1		16.072	16.072	3	0.0096372	7983	DP1063-4	55.66	55.66			0.91795	0.89248	NaN	1	0	Median	7385600	3805600	3580000	2077	426	1961	4409	9719;9720	9720	540	2	9606
LPSSPVYEDAASFK	1	0	Unmodified	1509.7351	0.73512469	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	2	0		1				19.195	19.195	2	0.00076646	11021	DP1063-2	124.39	86.082			NaN	NaN	NaN	0	0	Median	6934000	0	6934000	2078	488	1962	4410	9721;9722	9722		2	9606
LPVDYYGIPFAAPTALASR	0	1	Unmodified	2021.0622	0.062212911	532	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	2	0		1				23.399	23.399	2	0.00030826	16562	DP1063-2	127.32	84.025			NaN	NaN	NaN	0	0	Median	4307900	0	4307900	2079	532	1963	4411	9723;9724	9724		2	9606
LPVGTTATLYFR	0	1	Unmodified	1337.7343	0.73433683	636	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	4.5	0.5				1	1	20.339	20.339	2	5.343E-06	13663	DP1063-4	148.94	90.714			0.89004	0.66472	NaN	1	0	Median	8510000	2654700	5855300	2080	636	1964	4412;4413	9725;9726;9727	9725		3	9606
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	0	2	Oxidation (M)	3141.4269	0.4268978	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	1	2	0		1				18.186	18.186	3	2.8237E-10	9610	DP1063-2	127.24	99.147			NaN	NaN	NaN	0	0	Median	16125000	0	16125000	2081	429	1965	4414	9728;9729;9730	9728	543	3	9606
LQAEIEGLK	1	0	Unmodified	999.56006	0.56006086	15	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3	0			1			17.401	17.401	2	0.017872	10059	DP1063-3	93.143	26.15		+	NaN	NaN	NaN	0	0	Median	14501000	0	14501000	2082	15	1966	4415	9731	9731		1	9606
LQALSAATAEHAAR	0	1	Unmodified	1408.7423	0.74227576	438	Q02833	RASSF7	Ras association domain-containing protein 7	yes	yes	0	0	0	4	0				1		15.655	15.655	3	0.010567	7496	DP1063-4	79.875	7.8692			NaN	NaN	NaN	0	0	Median	4609800	0	4609800	2083	438	1967	4416	9732	9732		1	9606
LQAYTSVSK	1	0	Unmodified	995.52876	0.52876073	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				14.869	14.869	2	0.016891	5218	DP1063-2	82.645	36.629			1.3716	1.1475	NaN	1	0	Median	29247000	12346000	16901000	2084	666	1968	4417	9733;9734;9735	9734		3	9606
LQEKEDLQELNDR	1	1	Unmodified	1628.8006	0.8005785	97	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	3	0			3			15.97	15.97	2;3	0.00079315	8128	DP1063-3	134.49	77.341			1.242	1.1265	NaN	1	0	Median	11808000	4481900	7326300	2085	97	1969	4418;4419;4420	9736;9737;9738	9737		3	9606
LQEKEELR	1	1	Unmodified	1043.5611	0.56112349	189;441	P20700;Q03252	LMNB1;LMNB2	Lamin-B1;Lamin-B2	no	no	0	0	1	3	0			1			13.12	13.12	2	0.0076689	4443	DP1063-3	114.5	16.896			1.1184	1.0143	NaN	1	0	Median	3407000	1362800	2044200	2086	189;441	1970	4421	9739;9740	9740		2	9606
LQETLSAADR	0	1	Unmodified	1102.5619	0.56185177	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.53	15.53	2	0.0014396	5141	DP1063-1	110.53	25.373			1.9185	1.501	NaN	1	0	Median	9963600	3200400	6763200	2087	420	1971	4422	9741;9742	9741		2	9606
LQGDANNLHGFEVDSR	0	1	Unmodified	1770.8285	0.82852458	325	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	5	0					1	17.147	17.147	3	0.010162	9642	DP1063-5	84.046	56.711			NaN	NaN	NaN	0	0	Median	0	0	0	2088	325	1972	4423	9743	9743		1	9606
LQGEFQLR	0	1	Unmodified	989.52943	0.52942943	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					17.795	17.795	2	0.056083	7645	DP1063-1	80.229	30.811			NaN	NaN	NaN	0	0	Median	2566400	0	2566400	2089	487	1973	4424	9744	9744		1	9606
LQHVEDGVLSMQVASAR	0	1	Oxidation (M)	1854.9258	0.92579578	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	1	0	3	0			1			16.814	16.814	3	0.0052913	9274	DP1063-3	58.693	58.693			0.98358	0.71944	NaN	1	0	Median	23704000	8239900	15465000	2090	449	1974	4425	9745	9745	551	1	9606
LQLHESQKDYK	2	0	Unmodified	1387.7096	0.70957864	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	3	0			1			13.366	13.366	3	0.016458	4719	DP1063-3	78.513	39.762			NaN	NaN	NaN	0	0	Median	5112800	0	5112800	2091	488	1975	4426	9746	9746		1	9606
LQMEAPHIIVGTPGR	0	1	Oxidation (M)	1633.861	0.86101068	350	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	0	4	0				1		16.852	16.852	3	0.00041914	8902	DP1063-4	83.633	83.633			2.18	1.4162	NaN	1	0	Median	14001000	3514800	10487000	2092	350	1976	4427	9747;9748;9749	9747	446	3	9606
LQMEQQQQLQQR	0	1	Oxidation (M)	1572.7678	0.76783858	631	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	0	5	0					2	14.08	14.08	2	7.2944E-06	5922	DP1063-5	163.38	112.59			NaN	NaN	NaN	0	0	Median	4419600	0	4419600	2093	631	1977	4428;4429	9750;9751;9752	9750	758	3	9606
LQQFFNER	0	1	Unmodified	1080.5352	0.53524309	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				17.917	17.917	2	0.0034707	9287	DP1063-2	121.62	65.608			NaN	NaN	NaN	0	0	Median	43453000	0	43453000	2094	654	1978	4430	9753;9754	9753		2	9606
LQQLKDETGELSSADEKR	2	1	Unmodified	2046.0229	0.022926872	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	2	2	0		1				15.679	15.679	3	0.041792	6288	DP1063-2	68.187	36.767			NaN	NaN	NaN	0	0	Median	0	0	0	2095	569	1979	4431	9755	9755		1	9606
LQQLPADFGR	0	1	Unmodified	1143.6037	0.60365701	575	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	4	0				1		18.221	18.221	2	0.044603	10795	DP1063-4	80.455	8.7626			NaN	NaN	NaN	0	0	Median	0	0	0	2096	575	1980	4432	9756	9756		1	9606
LQQTEAELR	0	1	Unmodified	1086.5669	0.56693715	217	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	2	0		1				14.846	14.846	2	0.031966	5225	DP1063-2	84.743	4.305			NaN	NaN	NaN	0	0	Median	2762200	0	2762200	2097	217	1981	4433	9757	9757		1	9606
LQQVLQMESHIQSTSDR	0	1	Oxidation (M)	2014.9742	0.97420254	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	2	0		2				15.944	15.944	2;3	1.0563E-05	6669	DP1063-2	155.09	103.36			3.4741	2.5611	NaN	1	0	Median	27030000	7007100	20023000	2098	495	1982	4434;4435	9758;9759;9760;9761;9762	9762	626	5	9606
LQSIGTENTEENR	0	1	Unmodified	1489.7009	0.70086445	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		15.016	15.016	2	0.0045256	6623	DP1063-4	99.343	47.394			NaN	NaN	NaN	0	0	Median	0	0	0	2099	98	1983	4436	9763	9763		1	9606
LQSIGTENTEENRR	0	2	Unmodified	1645.802	0.80197548	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	4	0				2		14.048	14.048	2;3	0.00024657	5293	DP1063-4	119.45	97.128			2.3365	2.0951	14.361	2	0	Median	52452000	18285000	34167000	2100	98	1984	4437;4438	9764;9765;9766;9767;9768;9769;9770	9764		7	9606
LQTSSVLVSGLR	0	1	Unmodified	1258.7245	0.72450043	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				18.892	18.892	2	0.0088641	10620	DP1063-2	88.596	65.955			2.628	1.8992	NaN	1	0	Median	18928000	5253900	13674000	2101	195	1985	4439	9771	9771		1	9606
LQVAGEITTGPR	0	1	Unmodified	1240.6776	0.67755023	647	Q9UJS0;O75746	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	yes	no	0	0	0	3	0			1			17.112	17.112	2	0.044717	9750	DP1063-3	80.916	23.739			2.3544	1.6951	NaN	1	0	Median	15049000	4411400	10638000	2102	647	1986	4440	9772	9772		1	9606
LQVEHPCTEMVADVNLPAAQLQIAMGIPLYR	0	1	2 Oxidation (M)	3508.7517	0.75166651	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	2					22.212	22.212	3;4	2.9303999999999997E-19	12985	DP1063-1	154.34	154.34			0.87906	0.7249	18.94	2	0	Median	51844000	24376000	27467000	2103	460	1987	4441;4442	9773;9774;9775;9776;9777;9778;9779;9780;9781;9782;9783	9781	580;581	11	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Oxidation (M)	2595.3037	0.30365852	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0.632		1	3	1		21.415	21.415	2;3	1.4042E-08	14449	DP1063-4	151.01	151.01			1.3587	1.0233	11.525	5	0	Median	370190000	149700000	220500000	2104	110	1988	4443;4444;4445;4446;4447	9784;9785;9786;9787;9788;9789;9790;9791;9792;9793;9794;9795;9796;9797;9798;9799;9800;9801;9802	9799	88	19	9606
LQVEHPVTECITGLDLVQEMIR	0	1	Unmodified	2579.3087	0.3087439	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.707		1	2	1		23.187	23.187	2;3	1.4727E-64	17781	DP1063-3	268.25	268.25			1.3285	0.94548	9.6734	4	0	Median	157250000	64181000	93073000	2105	110	1988	4448;4449;4450;4451	9803;9804;9805;9806;9807;9808;9809;9810;9811;9812;9813;9814	9808		12	9606
LQVEHPVTEMITGTDLVEWQLR	0	1	Oxidation (M)	2609.3159	0.31593777	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.8	0.748		2	2	1		21.333	21.333	2;3	2.6428000000000003E-29	13876	DP1063-2	210.46	210.46			1.2562	1.0228	19.218	5	0	Median	359930000	155230000	204710000	2106	595	1989	4452;4453;4454;4455;4456	9815;9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826;9827;9828;9829;9830;9831	9816	717	17	9606
LQVEHPVTEMITGTDLVEWQLR	0	1	Unmodified	2593.321	0.32102315	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		22.648	22.648	3	1.6315E-07	16507	DP1063-4	120.33	106.22			1.3038	0.89571	14.083	2	0	Median	23460000	9132800	14327000	2107	595	1989	4457;4458	9832;9833;9834;9835	9833		4	9606
LQVEHTVTEEITDVDLVHAQIHVAEGR	0	1	Unmodified	3037.5469	0.546877	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.67	0.943		2		1		20.132	20.132	3;4;5	1.4667E-14	12378	DP1063-2	161.04	161.04			1.7711	1.1908	16.31	3	0	Median	86719000	28884000	57835000	2108	154	1990	4459;4460;4461	9836;9837;9838;9839	9837		4	9606
LQVEPAVDTSGVQCYGPGIEGQGVFR	0	1	Unmodified	2762.3334	0.33337875	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	2					21.176	21.176	2;3	3.0874E-07	11769	DP1063-1	146.86	123.72			NaN	NaN	NaN	0	0	Median	11274000	0	11274000	2109	190	1991	4462;4463	9840;9841;9842;9843	9840		4	9606
LQVVDQPLPVR	0	1	Unmodified	1262.7347	0.73467118	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				18.538	18.538	2	0.00021117	10087	DP1063-2	127.3	127.3			1.8454	1.4194	2.9582	2	0	Median	34868000	13103000	21765000	2110	303	1992	4464;4465	9844;9845;9846;9847	9847		4	9606
LREDLER	0	2	Unmodified	929.49304	0.49304393	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					1	13.609	13.609	2	0.0016938	5450	DP1063-5	134.81	40.804			1.8906	1.6087	NaN	1	0	Median	36437000	11932000	24506000	2111	374	1993	4466	9848;9849;9850;9851	9850		4	9606
LRENVFQEHQTLK	1	1	Unmodified	1640.8635	0.86345352	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	2.5	0.5		1	1			15.503	15.503	3	0.0064075	7524	DP1063-3	85.45	58.802			NaN	NaN	NaN	0	0	Median	31763000	0	31763000	2112	488	1994	4467;4468	9852;9853	9853		2	9606
LRSEIDNVK	1	1	Unmodified	1072.5877	0.58767259	101;30	CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	1	0	1					14.001	14.001	2	0.02538	3413	DP1063-1	120.31	39.868		+	NaN	NaN	NaN	0	0	Median	5450500	5450500	0	2113	30;101	1995	4469	9854	9854		1	9606
LRSEIDNVKK	2	1	Unmodified	1200.6826	0.68263561	101;30	CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	2	3	0			1			12.917	12.917	2	0.021339	4184	DP1063-3	157.99	35.055		+	NaN	NaN	NaN	0	0	Median	9099900	9099900	0	2114	30;101	1996	4470	9855	9855		1	9606
LSANQQNILK	1	0	Unmodified	1127.6299	0.62987176	342	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	5	0					1	16.014	16.014	2	0.0014591	8313	DP1063-5	110.41	110.41			1.7923	1.5172	NaN	1	0	Median	6485000	1906200	4578700	2115	342	1997	4471	9856;9857	9856		2	9606
LSDGGLLLSYDGSSYTTYMK	1	0	Oxidation (M)	2186.0089	0.0089162914	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				21.328	21.328	2	8.5524E-08	11768	DP1063-1	171.26	171.26			1.3467	1.1313	2.9308	2	0	Median	41146000	17284000	23862000	2116	460	1998	4472;4473;4474	9858;9859;9860;9861;9862;9863;9864;9865;9866;9867	9858	582	10	9606
LSDGGLLLSYDGSSYTTYMK	1	0	Unmodified	2170.014	0.014001669	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.241	22.241	2	2.3741E-05	13000	DP1063-1	176.87	124.3			NaN	NaN	NaN	0	0	Median	3806300	0	3806300	2117	460	1998	4475	9868;9869;9870	9868		3	9606
LSDGGLLLSYDGSSYTTYMKEEVDR	1	1	Oxidation (M)	2814.2906	0.29057046	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	1	1				20.422	20.422	3	1.2428E-11	10944	DP1063-1	126.9	126.9			1.3654	1.2796	1.3346	2	0	Median	78134000	29785000	48348000	2118	460	1999	4476;4477	9871;9872;9873;9874;9875;9876	9872	582	6	9606
LSDLLAPISEQIK	1	0	Unmodified	1425.8079	0.80789571	431	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	3	0			1			21.347	21.347	2	0.027516	15472	DP1063-3	77.288	37.286			NaN	NaN	NaN	0	0	Median	0	0	0	2119	431	2000	4478	9877	9877		1	9606
LSELEAALQR	0	1	Unmodified	1128.6139	0.61388734	15	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	4	0				1		18.848	18.848	2	0.034927	11687	DP1063-4	82.75	34.791		+	1.9072	1.1868	NaN	1	0	Median	9996600	3048600	6948000	2120	15	2001	4479	9878	9878		0	9606
LSESQLSFR	0	1	Unmodified	1065.5455	0.54547343	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3.5	0.5			1	1		17.829	17.829	2	0.00041972	10672	DP1063-3	128.61	33.255			1.4904	1.0263	5.9828	2	0	Median	42101000	16952000	25149000	2121	591	2002	4480;4481	9879;9880;9881	9880		3	9606
LSGSNPYTTVTPQIINSK	1	0	Unmodified	1919	6.5851E-06	60	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	2	0		1				19.058	19.058	2	0.0033854	10827	DP1063-2	128.9	84.445			NaN	NaN	NaN	0	0	Median	0	0	0	2122	60	2003	4482	9882	9882		1	9606
LSIPTYGLQCTR	0	1	Unmodified	1407.718	0.71803484	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					19.731	19.731	2	0.0019673	9956	DP1063-1	105.4	66.131			1.8895	1.4946	NaN	1	0	Median	11644000	3081100	8562900	2123	303	2004	4483	9883;9884	9883		2	9606
LSIVPVRR	0	2	Unmodified	938.60253	0.6025348	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	4	0				1		15.887	15.887	2	0.011257	7810	DP1063-4	73.039	35.945			2.0948	1.8783	NaN	1	0	Median	6600400	2095800	4504600	2124	172	2005	4484	9885;9886	9886		2	9606
LSKEDIER	1	1	Unmodified	988.51892	0.51892433	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			13.751	13.751	2	0.0080987	5138	DP1063-3	113.5	5.9056			2.8151	2.5532	NaN	1	0	Median	47563000	12225000	35338000	2125	153	2006	4485	9887;9888;9889;9890	9888		4	9606
LSKEEIER	1	1	Unmodified	1002.5346	0.53457439	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3	0			2			13.375	13.375	2;3	5.6116E-05	4707	DP1063-3	144.12	74.123			3.2449	2.9431	NaN	1	0	Median	104170000	24527000	79639000	2126	149	2007	4486;4487	9891;9892;9893;9894;9895;9896	9891		6	9606
LSLDDLLQR	0	1	Unmodified	1071.5924	0.59242362	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					22.238	22.238	2	0.0015996	13029	DP1063-1	122.18	20.575			1.8165	1.4586	NaN	1	0	Median	4771800	1096300	3675500	2127	222	2008	4488	9897	9897		1	9606
LSLGTYASLHGR	0	1	Unmodified	1273.6779	0.67788459	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	2	0		1				17.54	17.54	2	0.041282	8770	DP1063-2	73.841	30.206			NaN	NaN	NaN	0	0	Median	0	0	0	2128	644	2009	4489	9898	9898		1	9606
LSLQEYTNSMK	1	0	Oxidation (M)	1328.6282	0.62821678	685				yes	yes	0	1	0	3	0			1			25.172	25.172	2	0.01083	20204	DP1063-3	72.243	72.243	+		1.4208	1.1409	NaN	1	0	Median	9463400	4132900	5330500	2129	685	2010	4490	9899;9900	9899	791	2	9606
LSNIFVIGK	1	0	Unmodified	989.59097	0.59096706	383	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		20.181	20.181	2	0.00458	13427	DP1063-4	109.01	69.349			2.3513	1.6275	NaN	1	0	Median	11405000	3037300	8367400	2130	383	2011	4491	9901;9902;9903;9904	9901		4	9606
LSPEELLLR	0	1	Unmodified	1068.6179	0.61791009	166	P13796;P13797;Q14651	LCP1;PLS3;PLS1	Plastin-2;Plastin-3;Plastin-1	yes	no	0	0	0	3	0			1			21.268	21.268	2	0.0012605	15409	DP1063-3	123.98	21.27			NaN	NaN	NaN	0	0	Median	6379600	0	6379600	2131	166	2012	4492	9905;9906	9906		2	9606
LSPGETPER	0	1	Unmodified	984.48762	0.4876242	535	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	2	0		1				13.951	13.951	2	0.014157	4066	DP1063-2	95.741	36.824			NaN	NaN	NaN	0	0	Median	7349500	0	7349500	2132	535	2013	4493	9907;9908	9908		2	9606
LSQYQEPLHLPGVR	0	1	Unmodified	1635.8733	0.87328993	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.8	0.748		2	2	1		18.716	18.716	2;3	1.2856E-28	11873	DP1063-3	219.92	219.92			1.1029	1.0466	12.271	4	0	Linear	624260000	284690000	339570000	2133	110	2014	4494;4495;4496;4497;4498	9909;9910;9911;9912;9913;9914;9915;9916;9917;9918;9919;9920;9921;9922;9923;9924	9923		16	9606
LSSEMNTSTVNSAR	0	1	Oxidation (M)	1511.6886	0.68858521	189	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	3	0			1			13.634	13.634	2	0.00088045	5024	DP1063-3	134.38	134.38			1.7977	1.3376	NaN	1	0	Median	10351000	3990900	6360200	2134	189	2015	4499	9925;9926	9926	238	2	9606
LSSPATLNSR	0	1	Unmodified	1044.5564	0.55637247	10	CON__P00761			yes	yes	0	0	0	3.44	1.17	1	1	1	5	1	15.158	15.158	2	0.00034326	4760	DP1063-1	150.36	73.587		+	NaN	NaN	NaN	0	0	Median	2332400000	2332400000	0	2135	10	2016	4500;4501;4502;4503;4504;4505;4506;4507;4508	9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9938;9939;9940;9941;9942;9943	9928		17	
LSSQEAASSFGDDR	0	1	Unmodified	1468.643	0.64301522	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.406	16.406	2	2.4922E-82	8668	DP1063-3	303.36	234.74			1.4085	1.326	17.167	3	0	Plateau	496970000	196810000	300160000	2136	110	2017	4509;4510;4511	9944;9945;9946;9947;9948;9949;9950;9951;9952;9953;9954;9955	9950		12	9606
LSSQEAASSFGDDRLLIEK	1	1	Unmodified	2065.0328	0.032763277	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		19.127	19.127	2;3	1.4047E-24	12467	DP1063-3	215.49	193.07			1.392	1.3071	7.3485	2	0	Median	163630000	55336000	108290000	2137	110	2018	4512;4513;4514	9956;9957;9958;9959;9960;9961;9962;9963	9959		8	9606
LSVDYGKK	2	0	Unmodified	908.49673	0.49673232	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	3.5	0.5			1	1		13.968	13.968	2	0.0034779	5460	DP1063-3	99.375	74.743			1.7602	1.6991	13.227	2	0	Median	65303000	20982000	44321000	2138	413;605	2019	4515;4516	9964;9965;9966;9967;9968	9965		5	9606
LTAIDILTTCAADIQR	0	1	Unmodified	1773.9295	0.92948418	76	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					23.466	23.466	2	1.7879E-05	14381	DP1063-1	179.67	136.86			NaN	NaN	NaN	0	0	Median	1665900	0	1665900	2139	76	2020	4517	9969;9970	9969		2	9606
LTAQFVAR	0	1	Unmodified	904.51305	0.51305109	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				16.512	16.512	2	4.7435E-07	7400	DP1063-2	155.73	88.7			1.4126	1.1461	NaN	1	0	Median	89512000	37696000	51816000	2140	513	2021	4518	9971;9972;9973	9972		3	9606
LTDCVVMRDPASK	1	1	Oxidation (M)	1506.717	0.71704856	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	4	0				1		14.545	14.545	3	0.014944	5984	DP1063-4	50.467	32.278			1.252	1.2173	NaN	1	0	Median	4085300	1676800	2408500	2141	197	2022	4519	9974	9974	249	1	9606
LTEGCSFR	0	1	Unmodified	968.43857	0.43856552	276	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	yes	no	0	0	0	5	0					1	15.066	15.066	2	0.00061343	7208	DP1063-5	130.04	85.066			2.5458	1.9013	NaN	1	0	Median	50189000	13831000	36358000	2142	276	2023	4520	9975;9976;9977;9978	9978		4	9606
LTELETAVR	0	1	Unmodified	1030.5659	0.56587452	473	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	4	0				1		16.827	16.827	2	0.0040668	8941	DP1063-4	109.11	24.046			NaN	NaN	NaN	0	0	Median	3570900	0	3570900	2143	473	2024	4521	9979	9979		1	9606
LTEMETLQSQLMAEK	1	0	2 Oxidation (M)	1782.838	0.83795156	252	P35579	MYH9	Myosin-9	yes	yes	0	2	0	1	0	1					18.085	18.085	2	0.008729	7976	DP1063-1	82.505	50.007			NaN	NaN	NaN	0	0	Median	0	0	0	2144	252	2025	4522	9980	9980	298;299	1	9606
LTFLVAQK	1	0	Unmodified	918.55385	0.55385327	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.849	18.849	2	0.00045555	8904	DP1063-1	133.47	79.759			1.3348	1.2169	14.788	2	0	Median	486920000	204790000	282130000	2145	460	2026	4523;4524	9981;9982;9983;9984	9981		4	9606
LTGSSAQEEASGVALGEAPDHSYESLR	0	1	Unmodified	2760.2838	0.2838456	459	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		18.46	18.46	3	0.046327	11125	DP1063-4	61.904	22.381			NaN	NaN	NaN	0	0	Median	0	0	0	2146	459	2027	4525	9985	9985		1	9606
LTIAEER	0	1	Unmodified	830.44978	0.44978213	383	P62701;Q8TD47	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	4	0				1		15.19	15.19	2	0.027359	6808	DP1063-4	106.42	17.772			2.0186	1.3887	NaN	1	0	Median	21936000	7755800	14180000	2147	383	2028	4526	9986;9987	9986		2	9606
LTLDTIFVPNTGK	1	0	Unmodified	1417.7817	0.78168095	664	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	4	0				1		21.686	21.686	2	0.0027398	15344	DP1063-4	103.08	48.102			NaN	NaN	NaN	0	0	Median	2027000	0	2027000	2148	664	2029	4527	9988	9988		1	9606
LTLHGLQQYYVK	1	0	Unmodified	1461.798	0.79799972	34	O00148;Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	yes	no	0	0	0	4	0				1		18.719	18.719	3	0.053164	11520	DP1063-4	53.013	25.349			NaN	NaN	NaN	0	0	Median	3666300	0	3666300	2149	34	2030	4528	9989	9989		1	9606
LTLIDPETLLPR	0	1	Unmodified	1379.8024	0.8024164	548	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				23.484	23.484	2	0.00034718	16623	DP1063-2	148.32	148.32			1.3458	0.99483	NaN	1	0	Median	8999000	4097500	4901500	2150	548	2031	4529	9990;9991	9991		2	9606
LTLTFNR	0	1	Unmodified	863.4865	0.48650199	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		18.468	18.468	2	0.027795	11153	DP1063-4	100.74	50.622			1.3975	0.8951	NaN	1	0	Median	12531000	4377400	8153900	2151	258	2032	4530	9992	9992		1	9606
LTLYDIAHTPGVAADLSHIETK	1	0	Unmodified	2364.2325	0.23252572	270	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				2		21.342	21.342	3;4	0.012182	14959	DP1063-4	53.718	53.718			1.7286	1.1965	NaN	1	0	Median	11085000	2495800	8589000	2152	270	2033	4531;4532	9993;9994	9993		2	9606
LTMLDIASNR	0	1	Oxidation (M)	1148.586	0.58595803	512	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		17.161	17.161	2	0.036376	9285	DP1063-4	84.213	17.783			NaN	NaN	NaN	0	0	Median	6050200	0	6050200	2153	512	2034	4533	9995	9995	654	1	9606
LTPEEEEILNK	1	0	Unmodified	1313.6715	0.6714618	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	17.992	17.992	2	0.00067638	10756	DP1063-5	120.31	120.31			1.4093	1.193	NaN	1	0	Median	36277000	14964000	21313000	2154	368	2035	4534	9996;9997	9996		2	9606
LTQDQDVDVK	1	0	Unmodified	1159.5721	0.57208211	234	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	3	0			1			14.434	14.434	2	0.00058869	6086	DP1063-3	128.91	68.224			NaN	NaN	NaN	0	0	Median	7731000	0	7731000	2155	234	2036	4535	9998	9998		1	9606
LTSFIGAIAIGDLVK	1	0	Unmodified	1516.8865	0.88648038	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			24.177	24.177	2	0.0054713	19075	DP1063-3	79.492	70.17			3.7753	3.0316	NaN	1	0	Median	12497000	2815100	9682000	2156	419	2037	4536	9999	9999		1	9606
LTSLVPFVDAFQLER	0	1	Unmodified	1733.9352	0.93522148	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1.5	0.5	1	1				24.71	24.71	2	0.0018808	18089	DP1063-2	144.28	144.28			1.8109	1.3188	NaN	1	0	Median	13602000	3812300	9790000	2157	483	2038	4537;4538	10000;10001;10002;10003;10004;10005	10002		6	9606
LTSSAEDEVETTYSR	0	1	Unmodified	1686.7584	0.75843891	277	P42694	HELZ	Probable helicase with zinc finger domain	yes	yes	0	0	0	1	0	2					17.011	17.011	2	8.8054E-11	6697	DP1063-1	181.66	128.94			NaN	NaN	NaN	0	0	Median	0	0	0	2158	277	2039	4539;4540	10006;10007	10006		2	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Oxidation (M)	2723.3259	0.32585053	414;129;480	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.33	0.471			2	1		21.623	21.623	2;3	2.243E-07	15749	DP1063-3	86.617	75.928			1.8838	1.4201	29.682	2	0	Median	157300000	45962000	111330000	2159	129;414;480	2040	4541;4542;4543	10008;10009;10010;10011;10012;10013;10014	10008	128	7	9606
LTTPTYGDLNHLVSATMSGVTTCLR	0	1	Unmodified	2707.3309	0.33093591	414;129;480	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.5	0.5			1	1		23.637	23.637	3	1.5517E-11	18406	DP1063-3	120.33	120.33			1.8032	1.1957	20.948	2	0	Median	26284000	9600400	16684000	2160	129;414;480	2040	4544;4545	10015;10016;10017;10018;10019	10016		5	9606
LTVEDPVTVEYITR	0	1	Unmodified	1633.8563	0.85630246	47	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	5	0					1	20.568	20.568	2	0.00078456	14086	DP1063-5	153.34	119.6			1.9718	1.4727	NaN	1	0	Median	13955000	4200900	9754100	2161	47	2041	4546	10020;10021	10020		2	9606
LTVNDFVR	0	1	Unmodified	962.51853	0.5185304	647	Q9UJS0;O75746	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	yes	no	0	0	0	3	0			1			19.318	19.318	2	0.033048	12762	DP1063-3	87.754	29.943			NaN	NaN	NaN	0	0	Median	9646400	0	9646400	2162	647	2042	4547	10022	10022		1	9606
LTVSSLQESGLK	1	0	Unmodified	1260.6925	0.6925316	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				18.106	18.106	2	2.3504E-05	9525	DP1063-2	142.98	60.337			NaN	NaN	NaN	0	0	Median	13264000	0	13264000	2163	190	2043	4548;4549	10023;10024;10025;10026	10025		4	9606
LTVVDTPGYGDAINCR	0	1	Unmodified	1749.8356	0.83558379	498	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	4	0				2		18.74	18.74	2	3.4917E-17	11514	DP1063-4	220.66	162.87			NaN	NaN	NaN	0	0	Median	11601000	0	11601000	2164	498	2044	4550;4551	10027;10028;10029	10028		3	9606
LTWHSCPEDEAQ	0	0	Unmodified	1471.6038	0.60379294	463	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	16.856	16.856	2	0.0034321	9250	DP1063-5	101.65	84.21			NaN	NaN	NaN	0	0	Median	0	0	0	2165	463	2045	4552	10030;10031	10030		2	9606
LVAGEMGQNEPDQGGQR	0	1	Oxidation (M)	1800.8061	0.80607458	599	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	1	0	5	0					2	14.143	14.143	2	0.010085	6026	DP1063-5	99.941	71.135			NaN	NaN	NaN	0	0	Median	5111200	0	5111200	2166	599	2046	4553;4554	10032;10033;10034	10033	728	3	9606
LVAIVDVIDQNR	0	1	Unmodified	1353.7616	0.76161421	318	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	21.196	21.196	2	0.00013963	14914	DP1063-5	156.83	129.71			1.56	1.1651	NaN	1	0	Median	29138000	11562000	17576000	2167	318	2047	4555	10035;10036	10036		2	9606
LVARPEPATGYTLEFR	0	2	Unmodified	1818.9628	0.96283322	520	Q16658	FSCN1	Fascin	yes	yes	0	0	1	3	0			1			18.649	18.649	3	0.00050167	11814	DP1063-3	117.4	82.363			NaN	NaN	NaN	0	0	Median	16956000	0	16956000	2168	520	2048	4556	10037	10037		1	9606
LVATSLEGK	1	0	Unmodified	916.52295	0.52294707	588	Q96MX6	WDR92	WD repeat-containing protein 92	yes	yes	0	0	0	4	0				1		15.752	15.752	2	0.017872	7533	DP1063-4	93.143	47.171			NaN	NaN	NaN	0	0	Median	1646200	0	1646200	2169	588	2049	4557	10038	10038		1	9606
LVEALCAEHQINLIK	1	0	Unmodified	1749.9447	0.94474031	206	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					3	19.02	19.02	2;3	0.00047601	12080	DP1063-5	121.31	121.31			2.1356	1.8078	NaN	1	0	Median	24426000	6430700	17995000	2170	206	2050	4558;4559;4560	10039;10040;10041;10042;10043	10039		5	9606
LVEDMENKIR	1	1	Oxidation (M)	1261.6336	0.63363651	296	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	1	4	0				1		13.938	13.938	3	0.055016	5227	DP1063-4	57.785	8.4346			NaN	NaN	NaN	0	0	Median	2673800	0	2673800	2171	296	2051	4561	10044	10044		1	9606
LVEQYTK	1	0	Unmodified	879.47018	0.47018322	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				14.386	14.386	2	0.011561	4606	DP1063-2	124.34	63.544			1.2347	1.033	NaN	1	0	Median	38503000	16989000	21514000	2172	513	2052	4562	10045;10046;10047;10048	10047		4	9606
LVFLGLDNAGK	1	0	Unmodified	1145.6445	0.64445919	630	Q9Y6B6;Q9NR31	SAR1B;SAR1A	GTP-binding protein SAR1b;GTP-binding protein SAR1a	yes	no	0	0	0	5	0					1	20.844	20.844	2	0.0024178	14449	DP1063-5	119.75	59.065			NaN	NaN	NaN	0	0	Median	3111700	0	3111700	2173	630	2053	4563	10049;10050	10050		2	9606
LVGILDILDEENR	0	1	Unmodified	1497.8039	0.80387296	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				24.236	24.236	2	4.4405E-05	17538	DP1063-2	138.25	101.58			NaN	NaN	NaN	0	0	Median	5980900	0	5980900	2174	654	2054	4564	10051	10051		1	9606
LVGSQEELASWGHEYVR	0	1	Unmodified	1958.9486	0.94863972	464	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	2	0		1				19.455	19.455	3	0.00015969	11375	DP1063-2	115.58	98.302			1.9809	1.4495	NaN	1	0	Median	24645000	7003000	17642000	2175	464	2055	4565	10052;10053	10053		2	9606
LVIEEAER	0	1	Unmodified	957.51311	0.51311067	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			16.218	16.218	2	0.025737	8434	DP1063-3	89.296	17.953			3.5551	2.8177	NaN	1	0	Median	67190000	13916000	53274000	2176	320	2056	4566	10054	10054		1	9606
LVILANNCPALR	0	1	Unmodified	1352.7598	0.75984008	395	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	19.152	19.152	2	0.00024605	12312	DP1063-5	152.47	127.33			1.4071	1.0509	NaN	1	0	Median	25438000	10394000	15044000	2177	395	2057	4567	10055;10056;10057;10058	10057		4	9606
LVINGNPITIFQER	0	1	Unmodified	1612.8937	0.89369102	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		22.268	22.268	2	3.9575E-13	16047	DP1063-4	194.48	171.26			2.3173	1.5925	NaN	1	0	Median	21757000	7303200	14454000	2178	102	2058	4568	10059;10060;10061;10062	10060		4	9606
LVINGNPITIFQERDPSK	1	1	Unmodified	2040.1004	0.10038933	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	4	0				1		20.908	20.908	3	1.7275E-07	14438	DP1063-4	187	136.96			NaN	NaN	NaN	0	0	Median	8163500	0	8163500	2179	102	2059	4569	10063;10064	10064		2	9606
LVKPGNQNTQVTEAWNK	2	0	Unmodified	1925.9959	0.99592426	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	1	4	0				1		16.095	16.095	3	0.00058294	8042	DP1063-4	97.291	97.291			2.0756	2.1555	NaN	1	0	Median	15257000	4772100	10485000	2180	659	2060	4570	10065;10066;10067	10066		3	9606
LVLEVAQHLGESTVR	0	1	Unmodified	1649.9101	0.91006937	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		19.165	19.165	2;3	0.00029618	12553	DP1063-3	113.4	83.262			2.0522	1.5768	NaN	1	0	Median	65333000	12265000	53068000	2181	121	2061	4571;4572;4573	10068;10069;10070;10071;10072;10073	10069		6	9606
LVLGLSFSAALNAPIEK	1	0	Unmodified	1741.9978	0.99782174	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	1			1		1	23.244	23.244	2	0.00086436	18006	DP1063-3	85.42	69.283			1.3613	1.0931	NaN	1	0	Median	9188300	4173600	5014700	2182	624	2062	4574;4575	10074;10075;10076	10074		3	9606
LVLVGDGGTGK	1	0	Unmodified	1014.571	0.5709599	387	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	16.798	16.798	2	0.00048335	9179	DP1063-5	123.21	42.753			2.945	2.4929	NaN	1	0	Median	31664000	8223800	23440000	2183	387	2063	4576	10077;10078;10079;10080	10080		4	9606
LVNELTEFAK	1	0	Unmodified	1162.6234	0.6233894	14	CON__P02769			yes	yes	0	0	0	2.94	0.609	1	3	26	1	1	23.299	23.299	2	5.2258E-06	12860	DP1063-3	169.44	114.07		+	NaN	NaN	NaN	0	0	Median	640990000	640990000	0	2184	14	2064	4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608	10081;10082;10083;10084;10085;10086;10087;10088;10089;10090;10091;10092;10093;10094;10095;10096;10097;10098;10099;10100;10101;10102;10103;10104;10105;10106;10107;10108;10109;10110;10111;10112;10113;10114;10115;10116;10117	10090		37	9606
LVNHFVEEFK	1	0	Unmodified	1260.6503	0.65027285	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			2			17.86	17.86	2;3	2.3605E-07	10707	DP1063-3	166.07	136.3			3.3479	2.6884	3.3039	2	0	Median	238720000	53892000	184830000	2185	149	2065	4609;4610	10118;10119;10120	10120		3	9606
LVNHFVEEFKR	1	1	Unmodified	1416.7514	0.75138388	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3.33	0.471			2	1		16.803	16.803	2;3	6.0284E-09	9215	DP1063-3	173.24	133.18			3.5291	2.9806	8.1496	3	0	Plateau	512200000	120220000	391980000	2186	149	2066	4611;4612;4613	10121;10122;10123;10124;10125;10126;10127;10128	10122		8	9606
LVPELDTIVPLESTK	1	0	Unmodified	1652.9237	0.92365374	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			17			25.037	25.037	2;3	1.2428E-20	16367	DP1063-3	249.83	249.83			1.1357	0.91192	18.618	4	0	Median	380300000	167510000	212800000	2187	111	2067	4614;4615;4616;4617;4618;4619;4620;4621;4622;4623;4624;4625;4626;4627;4628;4629;4630	10129;10130;10131;10132;10133;10134;10135;10136;10137;10138;10139;10140;10141;10142;10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155	10131		27	9606
LVPGGGATEIELAK	1	0	Unmodified	1353.7504	0.75038083	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			18.197	18.197	2	0.0019141	11242	DP1063-3	107.06	66.061			5.5516	4.4579	NaN	1	0	Median	49801000	6826200	42975000	2188	319	2068	4631	10156;10157	10156		2	9606
LVQAFQFTDK	1	0	Unmodified	1195.6237	0.62372375	446	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	19.21	19.21	2	0.00011753	12353	DP1063-5	128.36	91.601			2.7626	2.3385	NaN	1	0	Median	55168000	15216000	39952000	2189	446	2069	4632	10158;10159	10159		2	9606
LVQAFQYTDK	1	0	Unmodified	1211.6186	0.61863837	462	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					1	17.643	17.643	2	1.7804E-05	10295	DP1063-5	135.71	91.942			2.709	2.2932	NaN	1	0	Median	19131000	5466600	13664000	2190	462	2070	4633	10160;10161;10162;10163;10164	10161		5	9606
LVQDVANNTNEEAGDGTTTATVLAR	0	1	Unmodified	2559.2413	0.2412525	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			2			18.093	18.093	2;3	1.49E-35	11014	DP1063-3	218.44	196.84			2.2747	1.7758	0.74638	2	0	Median	113490000	34112000	79382000	2191	151	2071	4634;4635	10165;10166;10167;10168;10169;10170;10171;10172	10165		8	9606
LVQSPNSYFMDVK	1	0	Oxidation (M)	1542.7388	0.73882986	276	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	yes	no	0	1	0	5	0					1	18.828	18.828	2	0.00049845	11826	DP1063-5	124.67	104.46			2.123	1.7971	NaN	1	0	Median	36704000	12373000	24331000	2192	276	2072	4636	10173;10174;10175;10176	10176	334	4	9606
LVQSPNSYFMDVK	1	0	Unmodified	1526.7439	0.74391524	276	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	yes	no	0	0	0	5	0					1	19.762	19.762	2	0.0040376	13099	DP1063-5	99.522	56.779			NaN	NaN	NaN	0	0	Median	6633700	0	6633700	2193	276	2072	4637	10177	10177		1	9606
LVRPPVQVYGIEGR	0	2	Unmodified	1581.8991	0.89911075	300	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	1	5	0					3	18.053	18.053	3	0.00063045	10822	DP1063-5	118.24	90.567			NaN	NaN	NaN	0	0	Median	9275600	0	9275600	2194	300	2073	4638;4639;4640	10178;10179;10180;10181	10178		4	9606
LVSESSDVLPK	1	0	Unmodified	1172.6289	0.62886871	15	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3.5	0.5			1	1		16.847	16.847	2	0.018188	8898	DP1063-4	74.165	56.925		+	2.6762	1.9952	22.703	2	0	Median	24809000	7787600	17021000	2195	15	2074	4641;4642	10182;10183;10184	10184		3	9606
LVSIGAEEIVDGNAK	1	0	Unmodified	1513.7988	0.79878758	60	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	2	0		1				19.257	19.257	2	0.013815	11106	DP1063-2	85.924	39.795			NaN	NaN	NaN	0	0	Median	8958800	0	8958800	2196	60	2075	4643	10185;10186	10185		2	9606
LVSNHSLHETSSVFVDSLTK	1	0	Unmodified	2199.1172	0.11716161	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					18.366	18.366	4	0.0051727	8348	DP1063-1	80.859	61.802			NaN	NaN	NaN	0	0	Median	4126300	0	4126300	2197	190	2076	4644	10187;10188	10187		2	9606
LVSSDPEINTK	1	0	Unmodified	1201.619	0.6190323	663	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		15.279	15.279	2	6.7239E-07	6933	DP1063-4	166.07	127.32			7.1331	4.9374	NaN	1	0	Median	22333000	3147700	19186000	2198	663	2077	4645	10189;10190	10189		2	9606
LVSSPCCIVTSTYGWTANMER	0	1	Oxidation (M)	2447.092	0.091951189	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		1				20.983	20.983	2	1.1451E-05	13482	DP1063-2	130.47	130.47			2.4072	1.8587	NaN	1	0	Median	48204000	12984000	35220000	2199	135	2078	4646	10191;10192;10193;10194	10193	142	4	9606
LVSSPCCIVTSTYGWTANMER	0	1	Unmodified	2431.097	0.097036567	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				22.017	22.017	2	7.1598E-05	14731	DP1063-2	160.78	140.07			NaN	NaN	NaN	0	0	Median	9350900	0	9350900	2200	135	2078	4647	10195;10196;10197	10195		3	9606
LVTDLTK	1	0	Unmodified	788.46437	0.46436956	14	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	1.5	0.5	2	2				15.9	15.9	2	0.0039921	5554	DP1063-1	138.85	33.579		+	NaN	NaN	NaN	0	0	Median	0	0	0	2201	14	2079	4648;4649;4650;4651	10198;10199;10200;10201	10198		4	9606
LVTSPCCIVTSTYGWTANMER	0	1	Oxidation (M)	2461.1076	0.10760125	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	1	0	2	0		1				21.271	21.271	2	8.9494E-06	13771	DP1063-2	119.65	105.57			1.9106	1.3887	NaN	1	0	Median	22659000	7976200	14683000	2202	132	2080	4652	10202;10203;10204;10205	10202	133	4	9606
LVVDSHVQYR	0	1	Unmodified	1214.6408	0.6407708	536	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	2					15.626	15.626	3	0.033426	5275	DP1063-1	74.162	41.639			NaN	NaN	NaN	0	0	Median	0	0	0	2203	536	2081	4653;4654	10206;10207	10207		2	9606
LVVENVDVLTQMR	0	1	Oxidation (M)	1530.8076	0.80757813	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	1	0	2	0		1				19.72	19.72	2	0.013057	11730	DP1063-2	71.085	37.996			1.4678	1.0616	NaN	1	0	Median	21301000	7426800	13874000	2204	666	2082	4655	10208;10209;10210	10208	774	3	9606
LVVPASQCGSLIGK	1	0	Unmodified	1427.7806	0.7806351	508	Q15366;P57721	PCBP2;PCBP3	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	yes	no	0	0	0	4	0				1		18.318	18.318	2	0.0017921	10905	DP1063-4	145.46	145.46			2.5181	1.743	NaN	1	0	Median	16372000	4470700	11901000	2205	508	2083	4656	10211;10212;10213;10214	10212		4	9606
LVVPATQCGSLIGK	1	0	Unmodified	1441.7963	0.79628516	507	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				1		18.595	18.595	2	0.0031915	11361	DP1063-4	103.34	32.365			NaN	NaN	NaN	0	0	Median	7634900	0	7634900	2206	507	2084	4657	10215	10215		1	9606
LVVSTQTALA	0	0	Unmodified	1001.5757	0.57571092	14	CON__P02769			yes	yes	0	0	0	2.5	0.5		1	1			19.139	19.139	2	0.0027457	10934	DP1063-2	111.82	62.28		+	NaN	NaN	NaN	0	0	Median	0	0	0	2207	14	2085	4658;4659	10216;10217;10218;10219	10217		4	9606
LVVWAADR	0	1	Unmodified	928.51305	0.51305109	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		18.406	18.406	2	7.5936E-05	9939	DP1063-2	143.85	92.281			1.532	1.4364	14.785	3	0	Plateau	948490000	389790000	558690000	2208	595	2086	4660;4661;4662	10220;10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231	10220		12	9606
LVYVFSQDFTVFGGSLSGAHAQK	1	0	Unmodified	2457.2329	0.23286007	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		22.599	22.599	2;3	1.6228999999999998E-21	17077	DP1063-3	193.85	193.85			1.3778	1.1064	12.938	3	0	Median	99371000	40348000	59022000	2209	111	2087	4663;4664;4665	10232;10233;10234;10235;10236;10237;10238;10239;10240	10232		9	9606
LWDLTTGTTTR	0	1	Unmodified	1263.6459	0.64591575	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		19.572	19.572	2	0.017537	12692	DP1063-4	83.948	15.033			NaN	NaN	NaN	0	0	Median	4488400	4488400	0	2210	408	2088	4666	10241	10241		1	9606
LWTLVSEQTR	0	1	Unmodified	1231.6561	0.65608651	287	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	5	0					1	19.761	19.761	2	1.5124E-06	13070	DP1063-5	154.12	99.396			2.8478	2.1269	NaN	1	0	Median	13716000	3723500	9992600	2211	287	2089	4667	10242;10243	10242		2	9606
LYIGLAGLATDVQTVAQR	0	1	Unmodified	1888.0418	0.04181182	311	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	5	0					1	23.241	23.241	2	0.00046431	17249	DP1063-5	124.3	90.713			NaN	NaN	NaN	0	0	Median	1648200	0	1648200	2212	311	2090	4668	10244	10244		1	9606
LYKEELEQTYHAK	2	0	Unmodified	1650.8253	0.82533668	189	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	3	0			1			15.396	15.396	3	0.018289	7380	DP1063-3	62.891	45.639			1.286	1.1538	NaN	1	0	Median	13389000	6232900	7155900	2213	189	2091	4669	10245	10245		1	9606
LYLVDLAGSEK	1	0	Unmodified	1206.6496	0.64960415	243	P33176;O60282;Q12840	KIF5B;KIF5C;KIF5A	Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A	yes	no	0	0	0	2	0		1				20.518	20.518	2	0.046028	12880	DP1063-2	74.162	30.027			NaN	NaN	NaN	0	0	Median	2917600	0	2917600	2214	243	2092	4670	10246	10246		1	9606
LYQEVEIASVDAFQGR	0	1	Unmodified	1823.9054	0.90537792	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				21.288	21.288	2	0.033825	13844	DP1063-2	74.46	39.256			NaN	NaN	NaN	0	0	Median	0	0	0	2215	569	2093	4671	10247	10247		1	9606
LYSVSYLLK	1	0	Unmodified	1084.6168	0.61684746	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					20.738	20.738	2	0.0038072	11258	DP1063-1	110.12	43.691			NaN	NaN	NaN	0	0	Median	4188000	0	4188000	2216	190	2094	4672	10248;10249	10248		2	9606
MAAAPSALLLLPPFPVLSTYR	0	1	Acetyl (Protein N-term);Oxidation (M)	2285.2494	0.24936175	674	Q9Y4F4	FAM179B	Protein FAM179B	yes	yes	1	1	0	1	0	1					22.898	22.898	2	0.027688	13611	DP1063-1	42.209	28.038			1.4409	1.1882	NaN	1	0	Median	21104000	7136700	13967000	2217	674	2095	4673	10250	10250	784	1	9606
MAACIAAGHWAAMGLGR	0	1	Acetyl (Protein N-term);Oxidation (M)	1800.8222	0.82219911	305	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	1	1	0	5	0					1	25.089	25.089	2	0.012003	19294	DP1063-5	50.292	27.175			1.4895	1.1124	NaN	1	0	Median	4500100	2341200	2158900	2218	305	2096	4674	10251;10252	10251	373	2	9606
MAALEVYVR	0	1	Oxidation (M)	1066.5481	0.54811597	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				18.643	18.643	2	3.3263E-05	7703	DP1063-1	139.31	82.136			1.3515	1.1776	9.7681	3	0	Median	418460000	180160000	238300000	2219	460	2097	4675;4676;4677	10253;10254;10255;10256;10257;10258;10259;10260;10261;10262;10263;10264;10265;10266	10256	583	14	9606
MAALEVYVR	0	1	Unmodified	1050.5532	0.55320134	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.151	19.151	2	0.0076602	10964	DP1063-2	98.458	53.123			1.3581	1.0767	22.449	2	0	Median	66181000	28882000	37299000	2220	460	2097	4678;4679	10267;10268;10269;10270;10271	10271		5	9606
MAALEVYVRR	0	2	Unmodified	1206.6543	0.65431237	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.565	17.565	3	0.016203	7322	DP1063-1	74.92	37.364			NaN	NaN	NaN	0	0	Median	2834000	0	2834000	2221	460	2098	4680	10272	10272		1	9606
MAALGPSSQNVTEYVVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1878.9146	0.9145624	250	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	1	1	0	3	0			1			23.313	23.313	2	0.048333	17988	DP1063-3	50.786	18.724			NaN	NaN	NaN	0	0	Median	0	0	0	2222	250	2099	4681	10273	10273	286	1	9606
MAALLAAAAVRAR	0	2	Acetyl (Protein N-term);Oxidation (M)	1341.7551	0.75508905	435	Q02252	ALDH6A1	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial	yes	yes	1	1	1	1	0	1					28.585	28.585	2	0.044291	19016	DP1063-1	49.536	15.149			NaN	NaN	NaN	0	0	Median	0	0	0	2223	435	2100	4682	10274	10274	547	1	9606
MADALDNYVIR	0	1	Oxidation (M)	1295.618	0.61798644	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.75	0.433		1	3			19.111	19.111	2	7.0555E-15	12393	DP1063-3	196.99	133.58			1.5127	1.2638	12.364	2	0	Median	310990000	94661000	216330000	2224	110	2101	4683;4684;4685;4686	10275;10276;10277;10278;10279;10280	10279	89	6	9606
MADALDNYVIR	0	1	Unmodified	1279.6231	0.62307182	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			19.884	19.884	2	3.7459E-10	13481	DP1063-3	191.17	162			1.1759	0.91097	33.603	2	0	Median	133970000	55752000	78218000	2225	110	2101	4687;4688	10281;10282;10283;10284;10285	10284		5	9606
MADEAPRKGSFSALVGR	1	2	Acetyl (Protein N-term);Oxidation (M)	1848.9152	0.9152311	474	Q13619	CUL4A	Cullin-4A	yes	yes	1	1	2	2	0		1				33.509	33.509	2	0.046969	26131	DP1063-2	53.569	17.122			NaN	NaN	NaN	0	0	Median	0	0	0	2226	474	2102	4689	10286	10286	616	1	9606
MADEAVCVGPAPTSK	1	0	Oxidation (M)	1547.696	0.69597877	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.5	1.12		1	1	1	1	15.669	15.669	2	3.0966E-30	7670	DP1063-3	239.48	209.71			1.2335	1.012	9.6396	3	0	Plateau	208960000	89060000	119900000	2227	110	2103	4690;4691;4692;4693	10287;10288;10289;10290;10291;10292;10293;10294;10295;10296;10297;10298;10299;10300	10296	90	14	9606
MADEAVCVGPAPTSK	1	0	Unmodified	1531.7011	0.70106415	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			16.431	16.431	2	1.2276E-24	8714	DP1063-3	283.35	229.28			NaN	NaN	NaN	0	0	Median	35182000	24668000	10513000	2228	110	2103	4694;4695	10301;10302;10303;10304	10303		4	9606
MAEHLELLAEMPMVGR	0	1	Acetyl (Protein N-term);3 Oxidation (M)	1915.8842	0.88419025	585	Q96I34	PPP1R16A	Protein phosphatase 1 regulatory subunit 16A	yes	yes	1	3	0	1	0	1					23.74	23.74	2	0.040747	14649	DP1063-1	58.592	16.551			NaN	NaN	NaN	0	0	Median	3258800	0	3258800	2229	585	2105	4696	10305	10305	702;703;704	1	9606
MAEIGEHVAPSEAANSLEQAQAAAER	0	1	Oxidation (M)	2695.2508	0.25077133	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	1	0	1					18.636	18.636	3	2.4569E-13	8670	DP1063-1	152.57	152.57			1.9582	1.5345	NaN	1	0	Median	10187000	3607100	6580100	2230	222	2106	4697	10306;10307;10308;10309	10308	274	4	9606
MALIGLGVSHPVLK	1	0	Oxidation (M)	1449.8378	0.83775605	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	4	0				1		18.492	18.492	2	0.011253	11189	DP1063-4	94.363	49.226			NaN	NaN	NaN	0	0	Median	3036200	0	3036200	2231	198	2107	4698	10310	10310	252	1	9606
MANKGPSYGMSREVQSK	2	1	Acetyl (Protein N-term);Oxidation (M)	1926.8928	0.8927811	434	Q01995	TAGLN	Transgelin	yes	yes	1	1	2	2	0		1				23.767	23.767	2	0.030246	16952	DP1063-2	59.57	13.69			NaN	NaN	NaN	0	0	Median	4487100	4487100	0	2232	434	2108	4699	10311	10311	546	1	9606
MAPNIYLVRQR	0	2	Acetyl (Protein N-term);Oxidation (M)	1417.75	0.75000367	517	Q16563	SYPL1	Synaptophysin-like protein 1	yes	yes	1	1	1	3	0			1			14.885	14.885	3	0.033188	6666	DP1063-3	57.785	28.996			NaN	NaN	NaN	0	0	Median	0	0	0	2233	517	2109	4700	10312	10312	660	1	9606
MASNKTTLQK	2	0	Acetyl (Protein N-term);Oxidation (M)	1178.5965	0.59652272	463	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	1	1	1	1	0	1					21.9	21.9	2	0.043252	12640	DP1063-1	50.703	8.4161			NaN	NaN	NaN	0	0	Median	0	0	0	2234	463	2110	4701	10313	10313	606	1	9606
MATEVAADALGEEWK	1	0	Oxidation (M)	1635.745	0.74503745	385	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	0	4	0				1		19.675	19.675	2	7.8113E-09	12834	DP1063-4	181.66	159.33			2.0855	1.4435	NaN	1	0	Median	13476000	3065300	10410000	2235	385	2111	4702	10314;10315;10316;10317	10317	477	4	9606
MATGLGEPVYGLSEDEGESR	0	1	Acetyl (Protein N-term);Oxidation (M)	2153.9423	0.94229329	592	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	1	1	0	1	0	2					15.216	15.216	2	0.020456	5185	DP1063-1	68.034	37.596			NaN	NaN	NaN	0	0	Median	1186900	1186900	0	2236	592	2112	4703;4704	10318;10319	10319	708	2	9606
MATNAAAQNAIK	1	0	Oxidation (M)	1218.6027	0.60267073	673	Q9Y490	TLN1	Talin-1	yes	yes	0	1	0	1	0	1					13.731	13.731	2	0.0052215	3110	DP1063-1	101.11	62.829			NaN	NaN	NaN	0	0	Median	603490	0	603490	2237	673	2113	4705	10320	10320	783	1	9606
MAVTFIGNSTAIQELFK	1	0	Oxidation (M)	1884.9655	0.96553533	129	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	3.75	0.829			2	1	1	23.47	23.47	2;3	1.1476000000000001E-30	17454	DP1063-4	228.61	205.38			1.8674	1.5807	24.772	3	0	Median	74539000	9382600	65157000	2238	129	2114	4706;4707;4708;4709	10321;10322;10323;10324;10325;10326;10327;10328;10329;10330	10326	129	10	9606
MAVTFIGNSTAIQELFK	1	0	Unmodified	1868.9706	0.97062071	129	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			1			24.104	24.104	2	4.0919E-27	18985	DP1063-3	243.4	189.21			NaN	NaN	NaN	0	0	Median	4506000	0	4506000	2239	129	2114	4710	10331;10332	10331		2	9606
MDDREDLVYQAK	1	1	Acetyl (Protein N-term);Oxidation (M)	1539.6875	0.68752257	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	1	1	4.5	0.5				1	1	17.165	17.165	2	0.001702	9331	DP1063-4	77.379	61.789			3.2821	3.191	NaN	1	0	Median	40597000	7659400	32937000	2240	371	2115	4711;4712	10333;10334;10335;10336;10337	10333	463	5	9606
MDELQLFR	0	1	Oxidation (M)	1066.5117	0.51173046	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	1	0	2	0		1				20.067	20.067	2	0.041461	12202	DP1063-2	90.37	44.418			NaN	NaN	NaN	0	0	Median	7341300	0	7341300	2241	337	2116	4713	10338;10339	10338	429	2	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	1.14	0.53	46	2	1	1		24.596	24.596	2;3	5.8998E-72	11844	DP1063-2	274.39	274.39			0.91003	0.75562	14.979	12	0	Median	423210000	216930000	206280000	2242	460	2117	4714;4715;4716;4717;4718;4719;4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761;4762;4763	10340;10341;10342;10343;10344;10345;10346;10347;10348;10349;10350;10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413;10414;10415	10403	584	76	9606
MDEPSPLAQPLELNQHSR	0	1	Acetyl (Protein N-term)	2103.0055	0.0055026685	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	1.33	0.471	2	1				20.938	20.938	2;3	3.4879999999999995E-87	11416	DP1063-1	286.88	286.88			1.1794	0.92415	3.657	3	0	Median	93186000	45647000	47538000	2243	460	2117	4764;4765;4766	10416;10417;10418;10419;10420;10421;10422;10423;10424	10417		9	9606
MDFQHRPGGK	1	1	Acetyl (Protein N-term);Oxidation (M)	1229.5611	0.56114027	511	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	1	1	1	3	0			1			13.701	13.701	2	0.00071802	5097	DP1063-3	90.601	90.601			1.0912	0.98976	NaN	1	0	Median	19024000	9239600	9784500	2244	511	2118	4767	10425;10426;10427;10428;10429	10425	649	5	9606
MDKNELVQK	2	0	Acetyl (Protein N-term);Oxidation (M)	1161.57	0.56997362	404	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	1	1	1	4.5	0.5				1	1	14.275	14.275	2	0.00079791	5631	DP1063-4	98.033	55.924			3.2199	3.2435	8.8663	2	0	Median	23558000	5188000	18370000	2245	404	2119	4768;4769	10430;10431;10432;10433;10434	10430	497	5	9606
MDPNTIIEALR	0	1	Acetyl (Protein N-term);Oxidation (M)	1329.6599	0.65985126	84	O95373	IPO7	Importin-7	yes	yes	1	1	0	2	0		1				23.32	23.32	2	0.0025536	16462	DP1063-2	86.882	39.684			NaN	NaN	NaN	0	0	Median	5947000	0	5947000	2246	84	2120	4770	10435	10435	61	1	9606
MEEELQHSHCVNCVSR	0	1	Acetyl (Protein N-term);Oxidation (M)	2071.851	0.85099264	557	Q8TB52	FBXO30	F-box only protein 30	yes	yes	1	1	0	2	0		1				15.348	15.348	3	0.00040285	5818	DP1063-2	111.81	97.234			NaN	NaN	NaN	0	0	Median	10732000	0	10732000	2247	557	2121	4771	10436;10437	10437	684	2	9606
MEEIGILVEK	1	0	Acetyl (Protein N-term);Oxidation (M)	1217.6213	0.62134049	282	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	1	1	0	4	0				1		22.006	22.006	2	0.024412	15767	DP1063-4	64.297	32.767			NaN	NaN	NaN	0	0	Median	1466900	0	1466900	2248	282	2122	4772	10438;10439	10438	341	2	9606
MEEVVIAGMSGK	1	0	Acetyl (Protein N-term);2 Oxidation (M)	1323.605	0.6050385	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	2	0	1	0	2					18.327	18.327	2	0.0035434	8310	DP1063-1	87.568	55.934			NaN	NaN	NaN	0	0	Median	0	0	0	2249	303	2123	4773;4774	10440;10441	10441	361;362	2	9606
MEGGFGSDFGGSGSGK	1	0	Acetyl (Protein N-term);Oxidation (M)	1533.6042	0.60418687	677	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	1	1	0	5	0					1	19.419	19.419	2	0.0012235	12618	DP1063-5	100.22	86.869			NaN	NaN	NaN	0	0	Median	6994200	0	6994200	2250	677	2124	4775	10442;10443	10442	786	2	9606
MEGPLSVFGDR	0	1	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	1	0	3	0			1			23.182	23.182	2	3.0027E-06	17703	DP1063-3	132.01	106.45			3.8528	2.8413	NaN	1	0	Median	11456000	3208600	8247900	2251	179	2125	4776	10444;10445	10444	225	2	9606
MEGPLSVFGDR	0	1	Acetyl (Protein N-term)	1248.5809	0.58087266	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	0	0	3	0			1			25.104	25.104	2	0.014295	20160	DP1063-3	85.807	51.601			NaN	NaN	NaN	0	0	Median	0	0	0	2252	179	2125	4777	10446	10446		1	9606
MEKPPAPPSLPAGPPGVK	2	0	Oxidation (M)	1784.9495	0.94949134	511	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	1	3	0			1			17.186	17.186	3	4.3338E-05	9774	DP1063-3	94.203	77.125			0.63649	0.57107	NaN	1	0	Median	25327000	14062000	11266000	2253	511	2126	4778	10447;10448;10449;10450	10447	650	4	9606
MELITILEK	1	0	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	1	0	2	0		1				25.211	25.211	2	0.0038029	18664	DP1063-2	74.464	74.464			3.0739	2.5716	NaN	1	0	Median	12046000	2870600	9175800	2254	495	2127	4779	10451;10452;10453;10454;10455;10456	10451	627	6	9606
MELQDPKMNGALPSDAVGYRQER	1	2	Acetyl (Protein N-term);Oxidation (M)	2662.2479	0.24793456	559	Q8WUX1	SLC38A5	Sodium-coupled neutral amino acid transporter 5	yes	yes	1	1	2	4	0				1		19.011	19.011	3	0.044931	11866	DP1063-4	43.216	9.2978			NaN	NaN	NaN	0	0	Median	13866000	0	13866000	2255	559	2128	4780	10457	10457	687	1	9606
MELQPPEASIAVVSIPR	0	1	Acetyl (Protein N-term);Oxidation (M)	1893.987	0.98699906	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	1	0	2	0		1				23.059	23.059	2	0.00015131	16100	DP1063-2	107.99	62.079			0.62746	0.47002	NaN	1	0	Median	7706600	4952300	2754200	2256	134	2129	4781	10458;10459	10458	137	2	9606
MELSDANLQTLTEYLKK	2	0	Acetyl (Protein N-term);Oxidation (M)	2054.0242	0.024172425	336	P55060	CSE1L	Exportin-2	yes	yes	1	1	1	2	0		2				23.308	23.308	2	0.00052461	16445	DP1063-2	134.61	134.61			2.8452	2.7179	NaN	1	0	Median	9472400	2404200	7068200	2257	336	2130	4782;4783	10460;10461;10462	10460	428	3	9606
MESVFNHAIR	0	1	Oxidation (M)	1218.5815	0.58154136	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	1	0	2	0		1				15.999	15.999	3	0.002976	6736	DP1063-2	70.028	48.996			1.2586	0.90982	NaN	1	0	Median	21156000	8785900	12370000	2258	543	2131	4784	10463;10464	10463	675	2	9606
MESVFNQAIR	0	1	Oxidation (M)	1209.5812	0.58120701	581	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	1	0	2	0		1				17.864	17.864	2	0.0027676	9186	DP1063-2	117.04	72.589			NaN	NaN	NaN	0	0	Median	5870600	0	5870600	2259	581	2132	4785	10465	10465	699	1	9606
MESYDVIANQPVVIDNGSGVIK	1	0	Acetyl (Protein N-term);Oxidation (M)	2405.1784	0.17844124	354	P61163	ACTR1A	Alpha-centractin	yes	yes	1	1	0	4	0				1		22.47	22.47	2	0.0031171	16282	DP1063-4	88.561	59.071			NaN	NaN	NaN	0	0	Median	0	0	0	2260	354	2133	4786	10466	10466	451	1	9606
METILEQQR	0	1	Acetyl (Protein N-term)	1188.5809	0.58087266	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	1	0	0	3	0			1			22.04	22.04	2	0.00089238	16401	DP1063-3	128.69	97.157			1.7865	1.3231	NaN	1	0	Median	10911000	4459900	6451100	2261	456	2134	4787	10467;10468	10468		2	9606
MEVKPPPGRPQPDSGR	1	2	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	322	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	4	0				1		14.269	14.269	3	0.0036258	5625	DP1063-4	69.261	45.665			0.96197	1.134	NaN	1	0	Median	7259600	3641600	3618000	2262	322	2135	4788	10469;10470	10469	392	2	9606
MEVQEQEEDISSLIR	0	1	Oxidation (M)	1820.8462	0.84620806	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.184	20.184	2	0.00020668	10566	DP1063-1	134.38	64.731			NaN	NaN	NaN	0	0	Median	2733100	0	2733100	2263	420	2136	4789	10471;10472	10471	527	2	9606
MEVQEQEEDISSLIR	0	1	Unmodified	1804.8513	0.85129344	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.007	21.007	2	0.029802	11574	DP1063-1	75.045	41.956			NaN	NaN	NaN	0	0	Median	0	0	0	2264	420	2136	4790	10473	10473		1	9606
MFQVPDSEGGRAGSRAMK	1	2	2 Oxidation (M)	1954.8989	0.89892911	621	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	2	2	1	0	2					26.21	26.21	2	0.02826	17123	DP1063-1	71.176	32.393			NaN	NaN	NaN	0	0	Median	0	0	0	2265	621	2137	4791;4792	10474;10475	10474	745;746	2	9606
MFVLDEADEMLSR	0	1	2 Oxidation (M)	1586.6956	0.69564442	350	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	no	0	2	0	4	0				1		19.683	19.683	2	0.052275	12921	DP1063-4	68.355	24.843			NaN	NaN	NaN	0	0	Median	4769300	0	4769300	2266	350	2138	4793	10476	10476		1	9606
MGAGMGFGLER	0	1	2 Oxidation (M)	1156.5005	0.50051385	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0.816		1	1	1		16.8	16.8	2	0.0013631	9214	DP1063-3	89.029	66.943			1.3574	1.0472	28.24	3	0	Median	98675000	43444000	55232000	2267	323	2139	4794;4795;4796	10477;10478;10479;10480;10481;10482;10483;10484;10485;10486;10487;10488	10482	400;401	12	9606
MGANNGKQYGSEGK	2	0	Acetyl (Protein N-term);Oxidation (M)	1497.6518	0.65180577	648	Q9UJT9	FBXL7	F-box/LRR-repeat protein 7	yes	yes	1	1	1	5	0					2	19.05	19.05	2	0.044202	18837	DP1063-5	50.452	8.2612			NaN	NaN	NaN	0	0	Median	100380000	0	100380000	2268	648	2140	4797;4798	10489;10490	10490	761	2	9606
MGANSLER	0	1	Unmodified	876.41235	0.41235077	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	no	0	0	0	2.5	0.5		1	1			14.454	14.454	2	0.015643	6075	DP1063-3	101.28	26.095			1.2025	0.88476	3.0964	2	0	Median	52029000	24896000	27133000	2269	323	2141	4799;4800	10491;10492;10493;10494;10495;10496	10494		6	9606
MGGMEGPFGGGMENMGR	0	1	4 Oxidation (M)	1777.6528	0.6528101	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	4	0	2.25	0.433		3	1			15.737	15.737	2	0.0029725	7811	DP1063-3	68.676	68.676			0.89582	0.66555	NaN	1	0	Median	10529000	5461000	5067800	2270	323	2142	4801;4802;4803;4804	10497;10498;10499;10500	10500	402;403;404;405	4	9606
MGGMVSFR	0	1	2 Oxidation (M)	915.39426	0.39425786	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					14.975	14.975	2	0.0091979	4472	DP1063-1	72.789	18.003			1.382	1.3606	NaN	1	0	Median	264610000	107870000	156730000	2271	460	2143	4805	10501;10502;10503	10503	585;586	3	9606
MGGMVSFR	0	1	Oxidation (M)	899.39934	0.39934324	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					16.822	16.822	2	0.026911	6509	DP1063-1	75.109	33.607			1.3694	1.2142	NaN	1	0	Median	59358000	24707000	34652000	2272	460	2143	4806	10504	10504	585;586	1	9606
MGGMVSFR	0	1	Unmodified	883.40443	0.40442862	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.935	17.935	2	0.030973	7762	DP1063-1	83.753	51.817			1.4256	1.155	NaN	1	0	Median	16400000	6504400	9896000	2273	460	2143	4807	10505	10505		1	9606
MGLAMGGGGGASFDR	0	1	2 Oxidation (M)	1414.5969	0.59693343	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0.816		1	1	1		15.93	15.93	2	0.00033223	8024	DP1063-3	110.64	98.006			1.3952	1.0771	14.898	3	0	Median	106390000	44338000	62053000	2274	323	2144	4808;4809;4810	10506;10507;10508;10509;10510;10511;10512;10513;10514;10515;10516;10517	10511	406;407	12	9606
MGLAMGGGGGASFDR	0	1	Oxidation (M)	1398.602	0.6020188	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			17.14	17.14	2	0.026101	9690	DP1063-3	84.507	53.086			NaN	NaN	NaN	0	0	Median	7148800	0	7148800	2275	323	2144	4811	10518	10518	406;407	1	9606
MGPAMGPALGAGIER	0	1	2 Oxidation (M)	1458.6959	0.69591919	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3.5	1.12		1	1	1	1	16.932	16.932	2	0.00021814	7946	DP1063-2	151.79	137.11			1.1303	0.88961	17.731	4	0	Median	148130000	68477000	79649000	2276	323	2145	4812;4813;4814;4815	10519;10520;10521;10522;10523;10524;10525;10526;10527;10528;10529;10530;10531;10532;10533;10534;10535	10521	408;409	17	9606
MGPAMGPALGAGIER	0	1	Oxidation (M)	1442.701	0.70100457	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			17.738	17.738	2	0.0058922	10571	DP1063-3	71.555	45.617			1.1744	0.87005	NaN	1	0	Median	10876000	4192200	6684200	2277	323	2145	4816	10536	10536	408;409	1	9606
MGPGAASGGERPNLK	1	1	Oxidation (M)	1456.7093	0.70926107	616	Q9H0U4	RAB1B	Ras-related protein Rab-1B	yes	yes	0	1	1	5	0					1	13.508	13.508	3	0.00046384	5295	DP1063-5	85.163	63.117			2.0367	1.7364	NaN	1	0	Median	6842800	2708000	4134700	2278	616	2146	4817	10537;10538	10537	741	2	9606
MGPLFTTIPGAHSGPMR	0	1	Acetyl (Protein N-term);Oxidation (M)	1826.8808	0.88075985	6	C9JC47;P0CG42;P0CG43	FAM157A;FAM157B;FAM157C	Putative protein FAM157A;Putative protein FAM157B;Putative protein FAM157C	yes	no	1	1	0	1	0	1					19.457	19.457	2	0.043294	9660	DP1063-1	53.967	21.977			NaN	NaN	NaN	0	0	Median	0	0	0	2279	6	2147	4818	10539	10539	5	1	9606
MGPLGLDHMASSIER	0	1	2 Oxidation (M)	1644.76	0.75997601	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	2.67	0.471		2	4			16.516	16.516	2;3	0.0003966	8854	DP1063-3	92.265	92.265			1.3037	1.0387	4.6178	2	0	Median	143260000	69304000	73960000	2280	323	2148	4819;4820;4821;4822;4823;4824	10540;10541;10542;10543;10544;10545;10546;10547;10548	10545	410;411	9	9606
MGQMAMGGAMGINNR	0	1	4 Oxidation (M)	1601.6419	0.64185148	505	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	4	0	3	0			1			13.159	13.159	2	0.0003044	4477	DP1063-3	117.7	91.286			NaN	NaN	NaN	0	0	Median	2985300	0	2985300	2281	505	2149	4825	10549;10550	10550	639;640;641;642	2	9606
MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR	1	1	Oxidation (M)	3519.782	0.78203867	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	5	0					1	21.991	21.991	4	3.983E-12	15874	DP1063-5	82.986	68.943			0.73924	0.63024	NaN	1	0	Median	13170000	6912500	6257000	2282	192	2150	4826	10551;10552	10552	243	2	9606
MHLYLGAAK	1	0	Oxidation (M)	1018.527	0.52698659	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	0	1.5	0.5	1	1				14.881	14.881	2	3.5054E-11	4382	DP1063-1	174.64	126.79			1.4265	1.2725	4.5712	2	0	Median	253140000	105720000	147420000	2283	43;460	2151	4827;4828	10553;10554;10555;10556;10557;10558;10559;10560;10561;10562;10563	10555	39	11	9606
MHLYLGAAK	1	0	Unmodified	1002.5321	0.53207197	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					16.578	16.578	2	6.4923E-05	6256	DP1063-1	138.85	101.83			1.2423	1.1367	NaN	1	0	Median	101710000	56214000	45497000	2284	43;460	2151	4829	10564;10565;10566;10567	10567		4	9606
MIAGQVLDINLAAEPK	1	0	Oxidation (M)	1697.9022	0.9022068	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		20.606	20.606	2	0.00020511	14009	DP1063-4	158.42	130.45			1.5302	1.0592	NaN	1	0	Median	19073000	7449900	11623000	2285	133	2152	4830	10568;10569;10570;10571	10570	136	4	9606
MIAGQVLDINLAAEPK	1	0	Unmodified	1681.9073	0.90729217	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		21.381	21.381	2	0.0011962	14962	DP1063-4	155.98	109.98			NaN	NaN	NaN	0	0	Median	3639800	0	3639800	2286	133	2152	4831	10572;10573	10572		2	9606
MIETAQVDER	0	1	Oxidation (M)	1206.5551	0.55505184	651	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	1	0	5	0					1	14.614	14.614	2	0.009189	6634	DP1063-5	99.442	56.843			NaN	NaN	NaN	0	0	Median	2855200	0	2855200	2287	651	2153	4832	10574;10575	10575	762	2	9606
MIIEEAKR	1	1	Unmodified	988.53755	0.53755128	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	3	0			1			14.394	14.394	2	0.020013	6067	DP1063-3	97.602	25.653			NaN	NaN	NaN	0	0	Median	3725000	0	3725000	2288	301	2154	4833	10576	10576		1	9606
MINLSVPDTIDER	0	1	Oxidation (M)	1517.7396	0.73955814	166	P13796;P13797	LCP1;PLS3	Plastin-2;Plastin-3	yes	no	0	1	0	3	0			1			19.64	19.64	2	0.00091326	13151	DP1063-3	126.19	79.303			NaN	NaN	NaN	0	0	Median	7787200	0	7787200	2289	166	2155	4834	10577;10578	10577	211	2	9606
MINTDLSR	0	1	Oxidation (M)	964.46478	0.46478027	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	4	0				1		15.05	15.05	2	0.0077357	6641	DP1063-4	104.37	64.719			2.2166	1.4701	NaN	1	0	Median	16467000	5022400	11445000	2290	259	2156	4835	10579;10580;10581	10581	309	3	9606
MKEIAEAYLGK	2	0	Oxidation (M)	1267.6482	0.64822394	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			2			16.084	16.084	2;3	0.0027755	8241	DP1063-3	72.29	50.263			3.3919	3.0432	NaN	1	0	Median	65138000	9008500	56130000	2291	153	2157	4836;4837	10582;10583;10584	10582	166	3	9606
MKEIAEAYLGK	2	0	Unmodified	1251.6533	0.65330932	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			17.023	17.023	2	0.037683	9581	DP1063-3	119.53	58.939			NaN	NaN	NaN	0	0	Median	12328000	0	12328000	2292	153	2157	4838	10585	10585		1	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	1	1	Oxidation (M)	3275.6173	0.61726475	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			22.688	22.688	3	2.2696E-06	17300	DP1063-3	93.505	51.614			NaN	NaN	NaN	0	0	Median	10207000	0	10207000	2293	149	2158	4839	10586	10586	157	1	9606
MKETAEAYLGK	2	0	Oxidation (M)	1255.6118	0.61183843	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	1	1	3	0			2			14.856	14.856	2	0.040195	6619	DP1063-3	79.659	28.854			NaN	NaN	NaN	0	0	Median	0	0	0	2294	152	2159	4840;4841	10587;10588	10587	165	2	9606
MKETAENYLGHTAK	2	0	Oxidation (M)	1607.7614	0.76135622	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			13.949	13.949	3	0.00020077	5414	DP1063-3	136.14	107.35			1.435	1.2875	NaN	1	0	Median	31700000	10855000	20845000	2295	263	2160	4842	10589;10590	10590	317	2	9606
MKPILLQGHER	1	1	Oxidation (M)	1336.7285	0.72853995	469	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	1	1	4	0				1		13.927	13.927	3	0.00025513	5255	DP1063-4	108.9	108.9			2.1303	2.0712	NaN	1	0	Median	8403800	2862700	5541100	2296	469	2161	4843	10591;10592;10593	10592	613	3	9606
MKQDAQVVLYR	1	1	Oxidation (M)	1365.7075	0.70747015	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	1	0	1					15.498	15.498	2	0.017806	5124	DP1063-1	89.247	39.829			NaN	NaN	NaN	0	0	Median	0	0	0	2297	420	2162	4844	10594	10594	528	1	9606
MLGPEGGEGFVVK	1	0	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	1	0	4	0				1		20.963	20.963	2	0.001532	14509	DP1063-4	94.297	49.683			NaN	NaN	NaN	0	0	Median	5722400	0	5722400	2298	327	2163	4845	10595;10596	10596	416	2	9606
MLVDDIGDVTITNDGATILK	1	0	Oxidation (M)	2119.0719	0.071850899	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	3	0			1			21.904	21.904	2	0.00026789	16228	DP1063-3	143.05	77.56			NaN	NaN	NaN	0	0	Median	4296800	0	4296800	2299	179	2164	4846	10597;10598	10598	226	2	9606
MLVSGAGDIK	1	0	Oxidation (M)	1005.5165	0.51648149	268	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	yes	no	0	1	0	3	0			1			15.568	15.568	2	0.0084959	7574	DP1063-3	78.113	33.736			3.9825	3.1979	NaN	1	0	Median	21922000	4942700	16979000	2300	268	2165	4847	10599;10600	10599	323	2	9606
MMDDDTELRTDGNSLLK	1	1	Oxidation (M)	1968.8769	0.87685626	146	P0C6C1	ANKRD34C	Ankyrin repeat domain-containing protein 34C	yes	yes	0	1	1	1	0	1					22.243	22.243	2	0.019833	13120	DP1063-1	87.184	24.718			NaN	NaN	NaN	0	0	Median	2871400	0	2871400	2301	146	2166	4848	10601	10601	152;153	1	9606
MMDIYVCLKR	1	1	Acetyl (Protein N-term);Oxidation (M)	1385.6505	0.6505489	278	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	1	1	1	3	0			1			20.547	20.547	2	0.032754	14406	DP1063-3	59.35	12.163			NaN	NaN	NaN	0	0	Median	0	0	0	2302	278	2167	4849	10602	10602	335;336	1	9606
MMDYLQGSGETPQTDVR	0	1	2 Oxidation (M)	1958.835	0.83499145	491	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	2	0	2	0		1				17.123	17.123	2	0.014451	8187	DP1063-2	75.78	44.072			NaN	NaN	NaN	0	0	Median	0	0	0	2303	491	2168	4850	10603	10603	624;625	1	9606
MMGHRPVLVLSQNTK	1	1	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	2	1	3	0			2			16.115	16.115	2;3	0.0012929	8351	DP1063-3	97.797	78.553			3.9876	3.6168	NaN	1	0	Median	52503000	9343500	43159000	2304	304	2169	4851;4852	10604;10605;10606;10607	10604	368;369	4	9606
MMPTPVILLK	1	0	Acetyl (Protein N-term);2 Oxidation (M)	1215.6607	0.66070288	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	1	2	0	3	0			1			21.714	21.714	2	0.0097685	15933	DP1063-3	69.825	48.377			3.288	2.6403	NaN	1	0	Median	12009000	3044000	8965300	2305	601	2170	4853	10608;10609	10608	730;731	2	9606
MMSPAQSTMPGQPTLMSNPAAAVGMIPGK	1	0	3 Oxidation (M)	2948.3574	0.35742671	40	O00512	BCL9	B-cell CLL/lymphoma 9 protein	yes	yes	0	3	0	4	0				1		22.756	22.756	3	0.040173	16621	DP1063-4	50.498	23.417			NaN	NaN	NaN	0	0	Median	0	0	0	2306	40	2171	4854	10610	10610	29;30;31;32	1	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	2 Oxidation (M)	2881.2146	0.21458552	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.33	0.471	2	1				21.24	21.24	2;3	1.5732E-13	11875	DP1063-1	157.28	157.28			0.78483	0.68292	12.835	2	0	Median	229570000	119430000	110140000	2307	460	2172	4855;4856;4857	10611;10612;10613;10614;10615;10616;10617;10618;10619;10620;10621	10613	587;588	11	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	Oxidation (M)	2865.2197	0.2196709	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				21.676	21.676	3	1.8629E-13	12298	DP1063-1	156.58	156.58			0.87269	0.69816	19.405	2	0	Median	71849000	36348000	35502000	2308	460	2172	4858;4859	10622;10623;10624;10625;10626;10627;10628;10629;10630;10631	10622	587;588	10	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	0	1	Unmodified	2849.2248	0.22475628	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.143	22.143	3	1.9346E-07	12941	DP1063-1	90.193	69.065			0.77961	0.61444	NaN	1	0	Median	7034800	4089200	2945600	2309	460	2172	4860	10632;10633;10634	10632		3	9606
MNDTVTIR	0	1	Acetyl (Protein N-term);Oxidation (M)	1006.4753	0.47534495	390	P62847	RPS24	40S ribosomal protein S24	yes	yes	1	1	0	5	0					1	16.956	16.956	2	0.0049677	9346	DP1063-5	80.229	47.874			2.1915	1.6368	NaN	1	0	Median	33171000	9768900	23402000	2310	390	2173	4861	10635;10636	10635	483	2	9606
MNLASEPQEVLHIGSAHNR	0	1	Oxidation (M)	2118.0276	0.027635094	35	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	1	0	4	0				1		17.364	17.364	3	0.018194	9670	DP1063-4	72.21	33.983			NaN	NaN	NaN	0	0	Median	2513400	0	2513400	2311	35	2174	4862	10637;10638	10637	26	2	9606
MNVGTAHSEVNPNTR	0	1	Acetyl (Protein N-term);Oxidation (M)	1683.7635	0.76348148	552	Q8N138	ORMDL3	ORM1-like protein 3	yes	yes	1	1	0	5	0					1	14.829	14.829	2	0.0032804	6929	DP1063-5	86.467	38.463			NaN	NaN	NaN	0	0	Median	0	0	0	2312	552	2175	4863	10639	10639	682	1	9606
MNVGVAHSEVNPNTR	0	1	Acetyl (Protein N-term);Oxidation (M)	1681.7842	0.78421693	526	Q9P0S3;Q53FV1	ORMDL1;ORMDL2	ORM1-like protein 1;ORM1-like protein 2	yes	no	1	1	0	5	0					2	15.558	15.558	2	0.00075943	7766	DP1063-5	103.75	73.359			NaN	NaN	NaN	0	0	Median	4085100	4085100	0	2313	526	2176	4864;4865	10640;10641	10640	666	2	9606
MNVLADALK	1	0	Oxidation (M)	989.52157	0.52156686	369	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	1	0	5	0					1	18.257	18.257	2	0.0055194	11135	DP1063-5	94.309	31.651			2.1548	1.8241	NaN	1	0	Median	26409000	7894000	18516000	2314	369	2177	4866	10642;10643;10644	10644	462	3	9606
MNYSGDQGQTIR	0	1	Oxidation (M)	1384.6041	0.60412729	531	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	1	0	1	0	1					14.422	14.422	2	0.0032317	3875	DP1063-1	115.23	51.698			NaN	NaN	NaN	0	0	Median	622320	0	622320	2315	531	2178	4867	10645	10645	667	1	9606
MPAISMSMLEQFLK	1	0	Oxidation (M)	1640.7976	0.79760707	684				yes	yes	0	1	0	2	0		1				23.59	23.59	2	0.049739	16724	DP1063-2	79.489	27.322	+		NaN	NaN	NaN	0	0	Median	24338000	0	24338000	2316	684	2179	4868	10646	10646	790	1	9606
MPALLERPKLSNAMAR	1	2	Acetyl (Protein N-term);2 Oxidation (M)	1870.9757	0.97572287	465	Q13227	GPS2	G protein pathway suppressor 2	yes	yes	1	2	2	1	0	2					22.302	22.302	2	0.013454	13135	DP1063-1	71.016	16.244			NaN	NaN	NaN	0	0	Median	0	0	0	2317	465	2180	4869;4870	10647;10648	10648	607;608	2	9606
MPCTEDYLSLILNR	0	1	Oxidation (M)	1739.8222	0.82224192	14	CON__P02769			yes	yes	0	1	0	2.64	0.84	2	17	19	2	2	28.339	28.339	2;3	1.9753000000000003E-121	17842	DP1063-3	349.59	277.49		+	NaN	NaN	NaN	0	0	Median	1139900000	1139900000	0	2318	14	2181	4871;4872;4873;4874;4875;4876;4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900;4901;4902;4903;4904;4905;4906;4907;4908;4909;4910;4911;4912	10649;10650;10651;10652;10653;10654;10655;10656;10657;10658;10659;10660;10661;10662;10663;10664;10665;10666;10667;10668;10669;10670;10671;10672;10673;10674;10675;10676;10677;10678;10679;10680;10681;10682;10683;10684;10685;10686;10687;10688;10689;10690;10691;10692;10693;10694;10695;10696;10697;10698;10699;10700;10701;10702;10703;10704;10705;10706;10707;10708;10709;10710;10711;10712;10713;10714;10715;10716;10717;10718;10719;10720;10721;10722;10723;10724;10725;10726;10727	10679	14	79	9606
MPCTEDYLSLILNR	0	1	Unmodified	1723.8273	0.82732729	14	CON__P02769			yes	yes	0	0	0	2.89	0.488	1	2	24	1		27.075	27.075	2;3	2.6769E-142	18828	DP1063-3	356.38	325.09		+	NaN	NaN	NaN	0	0	Median	263560000	263560000	0	2319	14	2181	4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936;4937;4938;4939;4940	10728;10729;10730;10731;10732;10733;10734;10735;10736;10737;10738;10739;10740;10741;10742;10743;10744;10745;10746;10747;10748;10749;10750;10751;10752;10753;10754;10755;10756;10757;10758;10759;10760;10761;10762;10763;10764;10765;10766;10767;10768;10769;10770;10771;10772;10773;10774;10775	10737		48	9606
MPGVTVKDVNQQEFVR	1	1	Acetyl (Protein N-term);Oxidation (M)	1903.9462	0.94619688	265	P39019	RPS19	40S ribosomal protein S19	yes	yes	1	1	1	5	0					1	16.987	16.987	2	0.054863	9432	DP1063-5	45.077	11.853			NaN	NaN	NaN	0	0	Median	0	0	0	2320	265	2182	4941	10776	10776		1	9606
MPKGGCPKAPQQEELPLSSDMVEK	3	0	Acetyl (Protein N-term);Oxidation (M)	2713.2761	0.27612314	537	Q6UB99	ANKRD11	Ankyrin repeat domain-containing protein 11	yes	yes	1	1	2	1	0	1					24.642	24.642	3	0.045743	15661	DP1063-1	47.499	16.432			NaN	NaN	NaN	0	0	Median	0	0	0	2321	537	2183	4942	10777	10777	669	1	9606
MPMERKALEMVEK	2	1	2 Oxidation (M)	1622.783	0.78301964	576	Q96BT3	CENPT	Centromere protein T	yes	yes	0	2	2	3	0			1			32.984	32.984	2	0.042066	27320	DP1063-3	64.711	19.344			NaN	NaN	NaN	0	0	Median	0	0	0	2322	576	2184	4943	10778	10778	693;694	1	9606
MPVIKPDIANWELSVK	2	0	Oxidation (M)	1854.9914	0.99135615	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2.8	0.748		2	2	1		20.194	20.194	2;3	7.1057E-10	13882	DP1063-3	186.42	152.24			1.1723	1.2138	13.313	5	0	Median	257670000	115920000	141760000	2323	110	2185	4944;4945;4946;4947;4948	10779;10780;10781;10782;10783;10784;10785;10786;10787;10788;10789;10790;10791;10792;10793;10794	10788	91	16	9606
MPVIKPDIANWELSVK	2	0	Unmodified	1838.9964	0.99644153	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.67	0.471		1	2			21.061	21.061	2;3	1.7867E-15	15062	DP1063-3	222.55	222.55			1.0135	0.96813	27.167	3	0	Median	96022000	47001000	49021000	2324	110	2185	4949;4950;4951	10795;10796;10797;10798;10799;10800;10801;10802	10796		8	9606
MQAQMQMQMQGGDGDGGALGHHV	0	0	4 Oxidation (M)	2446.9722	0.97224676	498	Q15019	SEPT2	Septin-2	yes	yes	0	4	0	4	0				1		14.296	14.296	3	0.00076436	5644	DP1063-4	87.554	76.242			NaN	NaN	NaN	0	0	Median	0	0	0	2325	498	2186	4952	10803;10804	10804	630;631;632;633	2	9606
MQAQMQMQMQGGDGDGGALGHHV	0	0	3 Oxidation (M)	2430.9773	0.97733214	498	Q15019	SEPT2	Septin-2	yes	yes	0	3	0	4	0				1		15.125	15.125	3	0.028712	6770	DP1063-4	50.425	46.548			NaN	NaN	NaN	0	0	Median	0	0	0	2326	498	2186	4953	10805	10805	630;631;632;633	1	9606
MQDAENVAVPEAAEER	0	1	Acetyl (Protein N-term);Oxidation (M)	1815.7945	0.79450684	340	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	1	1	0	2	0		1				18.469	18.469	2	0.00011004	9997	DP1063-2	127.02	94.859			NaN	NaN	NaN	0	0	Median	8007200	0	8007200	2327	340	2187	4954	10806;10807	10806	432	2	9606
MQLDNPSK	1	0	Unmodified	931.44332	0.44331654	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.819	14.819	2	1.9859E-07	4342	DP1063-1	159.2	129.82			1.2216	1.0999	NaN	1	0	Median	77984000	35448000	42536000	2328	460	2188	4955	10808;10809;10810;10811	10809		4	9606
MQMHKDGDVYKYFSR	2	1	2 Oxidation (M)	1935.8608	0.86075269	315	P49917	LIG4	DNA ligase 4	yes	yes	0	2	2	1	0	1					16.288	16.288	2	0.046902	5968	DP1063-1	65.695	16.212			NaN	NaN	NaN	0	0	Median	6398000	0	6398000	2329	315	2189	4956	10812	10812	380;381	1	9606
MREIVHLQAGQCGNQIGAK	1	1	Unmodified	2109.0572	0.057161084	414	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	1	3	0			2			16.006	16.006	3;4	1.9317E-05	8135	DP1063-3	154.31	0			2.3039	2.0896	4.1525	2	0	Median	50884000	14419000	36465000	2330	414	2190	4957;4958	10813;10814;10815;10816;10817;10818;10819;10820	10814		8	9606
MSATFIGNSTAIQELFK	1	0	Oxidation (M)	1872.9291	0.92914983	414;480	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	4	0.707			1	2	1	22.93	22.93	2	4.4702E-85	17497	DP1063-3	299.04	28.833			1.977	1.6299	19.28	2	0	Median	103290000	30371000	72923000	2331	414;480	2191	4959;4960;4961;4962	10821;10822;10823;10824;10825;10826;10827;10828;10829;10830	10822	514	10	9606
MSFSSNLNHYGMTHVASVSDVLLDNSFTPPCQR	0	1	2 Oxidation (M)	3742.6814	0.6814147	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1.33	0.471	2	1				20.73	20.73	3;4	2.1784E-11	11267	DP1063-1	88.842	74.469			1.1542	0.89934	22.831	3	0	Median	97980000	43052000	54928000	2332	460	2192	4963;4964;4965	10831;10832;10833;10834	10831	589;590	4	9606
MSGECAPNVSVSVSTSHTTISGGGSR	0	1	Oxidation (M)	2580.1544	0.1544281	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	2.5	0.764	1	1	4			16.477	16.477	2;3	4.6722E-72	8794	DP1063-3	263.2	235.43		+	NaN	NaN	NaN	0	0	Median	160210000	160210000	0	2333	101	2193	4966;4967;4968;4969;4970;4971	10835;10836;10837;10838;10839;10840;10841;10842;10843;10844;10845	10845	75	11	9606
MSGECAPNVSVSVSTSHTTISGGGSR	0	1	Unmodified	2564.1595	0.15951348	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					16.855	16.855	3	0.0019085	6571	DP1063-1	73.649	48.491		+	NaN	NaN	NaN	0	0	Median	2266000	2266000	0	2334	101	2193	4972	10846;10847	10847		2	9606
MSLQKLMEPEAGTNR	1	1	Acetyl (Protein N-term);Oxidation (M)	1761.839	0.83895461	297	P47893;P47888	OR3A2;OR3A3	Olfactory receptor 3A2;Olfactory receptor 3A3	yes	no	1	1	1	5	0					1	19.96	19.96	2	0.020739	13326	DP1063-5	68.132	23.055			NaN	NaN	NaN	0	0	Median	6192900	6192900	0	2335	297	2194	4973	10848	10848	348	1	9606
MSMKEVDEQMLNVQNK	2	0	3 Oxidation (M)	1970.8747	0.87474777	414;129;480	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	3	1	3.33	0.471			2	1		14.584	14.584	2;3	0.00068536	6249	DP1063-3	108.36	96.318			2.0371	1.8277	10.877	2	0	Median	37099000	9079400	28019000	2336	129;414;480	2195	4974;4975;4976	10849;10850;10851;10852;10853;10854;10855;10856	10850	123;130;131	8	9606
MSMPDAMPLPGVGEELK	1	0	Acetyl (Protein N-term);Oxidation (M)	1858.8515	0.85149313	62	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	1	1	0	2	0		1				15.457	15.457	3	0.041006	5982	DP1063-2	50.024	15.069			NaN	NaN	NaN	0	0	Median	57890000	57890000	0	2337	62	2196	4977	10857	10857	54	1	9606
MSNEVETSATNGQPDQQAAPK	1	0	Acetyl (Protein N-term);Oxidation (M)	2259.9914	0.99136875	425	P98082	DAB2	Disabled homolog 2	yes	yes	1	1	0	2	0		1				19.389	19.389	3	0.047456	11280	DP1063-2	45.707	25.261			NaN	NaN	NaN	0	0	Median	0	0	0	2338	425	2197	4978	10858	10858	538	1	9606
MSPSGGAPQTTPTLR	0	1	Oxidation (M)	1515.7351	0.73514147	613	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	1	0	2	0		1				15.377	15.377	2	0.015746	5894	DP1063-2	90.434	48.098			NaN	NaN	NaN	0	0	Median	2868700	0	2868700	2339	613	2198	4979	10859;10860;10861	10859	740	3	9606
MSQSIIVSGESGAGK	1	0	Oxidation (M)	1465.7083	0.70825802	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	1	0	2	0		1				15.734	15.734	2	0.0010077	6331	DP1063-2	144.28	92.333			NaN	NaN	NaN	0	0	Median	15346000	0	15346000	2340	654	2199	4980	10862;10863	10863	763	2	9606
MSQVAPSLSALIGEAVGAR	0	1	Oxidation (M)	1871.9775	0.977497	41	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	3	0			1			23.788	23.788	2	0.014975	18572	DP1063-3	109.99	66			NaN	NaN	NaN	0	0	Median	0	0	0	2341	41	2200	4981	10864	10864	33	1	9606
MSVDAVEIETLRK	1	1	Oxidation (M)	1505.7759	0.77594365	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	1	2	0		1				17.296	17.296	3	0.0017228	8420	DP1063-2	85.554	85.554			0.93505	0.88085	NaN	1	0	Median	22060000	10980000	11080000	2342	418	2201	4982	10865;10866;10867;10868	10868	518	4	9606
MSVEADINGLRR	0	2	Oxidation (M)	1375.6878	0.68779734	12;16	CON__P02533;P02533;CON__Q9QWL7;CON__Q6IFX2;CON__P08727;P08727	KRT14;KRT19	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 19	no	no	0	1	1	4	0				1		16.78	16.78	2	0.010342	8857	DP1063-4	89.029	55.804		+	NaN	NaN	NaN	0	0	Median	3265400	3265400	0	2343	12;16	2202	4983	10869	10869	10	1	9606
MSVQPTVSLGGFEITPPVVLR	0	1	Oxidation (M)	2242.2031	0.20313984	125	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4	0				2		23.55	23.55	2;3	8.8411E-19	17559	DP1063-4	198.6	198.6			1.7651	1.1027	NaN	1	0	Median	19125000	2485700	16639000	2344	125	2203	4984;4985	10870;10871;10872;10873;10874;10875	10871	117	6	9606
MTDQEAIQDLWQWR	0	1	Oxidation (M)	1834.8308	0.83083277	125	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4	0				1		23.016	23.016	2	4.262E-52	16911	DP1063-4	270.56	215.77			2.5401	1.6561	NaN	1	0	Median	14405000	3835800	10569000	2345	125	2204	4986	10876;10877;10878;10879;10880	10876	118	5	9606
MTDQEAIQDLWQWR	0	1	Unmodified	1818.8359	0.83591814	125	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		23.783	23.783	2	0.0017006	17839	DP1063-4	118.9	77.201			1.7677	1.3361	NaN	1	0	Median	2787000	926800	1860200	2346	125	2204	4987	10881;10882;10883	10882		3	9606
MTLDDFR	0	1	Oxidation (M)	912.40112	0.40111738	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	3	0			1			17.025	17.025	2	0.020877	9408	DP1063-3	110.34	77.408		+	NaN	NaN	NaN	0	0	Median	129830000	129830000	0	2347	251	2205	4988	10884	10884	288	1	9606
MTTETASEDDNFGTAQSNK	1	0	Oxidation (M)	2061.8433	0.84330753	567	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	1	0	1					15.276	15.276	2	0.03014	4872	DP1063-1	92.063	77.71			NaN	NaN	NaN	0	0	Median	0	0	0	2348	567	2206	4989	10885	10885	691	1	9606
MTVPISITNPDLLR	0	1	Oxidation (M)	1584.8545	0.85452832	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.768	20.768	2	0.00023413	11327	DP1063-1	157.38	133.39			1.3244	1.0362	NaN	1	0	Median	8204300	2804600	5399800	2349	43	2207	4990	10886;10887;10888;10889	10888	40	4	9606
MVAAVACAQVPK	1	0	Oxidation (M)	1259.6366	0.6366134	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		15.824	15.824	2	0.00024693	7876	DP1063-3	140.35	95.195			1.4217	1.0599	7.672	2	0	Median	544880000	230140000	314740000	2350	624	2208	4991;4992	10890;10891;10892;10893;10894	10892	750	5	9606
MVAAVACAQVPK	1	0	Unmodified	1243.6417	0.64169877	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.749	16.749	2	0.00031467	9147	DP1063-3	149.65	121.79			1.466	1.1772	NaN	1	0	Median	244370000	104810000	139560000	2351	624	2208	4993;4994	10895;10896;10897;10898;10899	10896		5	9606
MVDVVEKEDVNEAIR	1	1	Oxidation (M)	1760.8615	0.86146419	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	1	1	2	0		2				16.665	16.665	2;3	0.0018485	7608	DP1063-2	119.45	73.096			NaN	NaN	NaN	0	0	Median	10454000	0	10454000	2352	246	2209	4995;4996	10900;10901	10901	284	2	9606
MVGYVSAGTVEYLYSQDGSFYFLELNPR	0	1	Oxidation (M)	3220.5063	0.50631732	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					25.023	25.023	3	2.8957E-12	16035	DP1063-1	124.91	124.91			1.2762	1.0199	NaN	1	0	Median	5259400	2245900	3013500	2353	460	2210	4997	10902;10903;10904;10905;10906;10907;10908	10903	591	7	9606
MVHAEAFSR	0	1	Acetyl (Protein N-term);Oxidation (M)	1104.5022	0.50222841	554	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	1	1	0	2	0		1				18.024	18.024	2	0.024327	9420	DP1063-2	48.756	13.4			1.5862	1.1543	NaN	1	0	Median	23001000	8815500	14185000	2354	554	2211	4998	10909	10909	683	1	9606
MVIITGPPEAQFK	1	0	Oxidation (M)	1445.7588	0.75883702	39	Q9NZI8;O00425;Q9Y6M1	IGF2BP1;IGF2BP3;IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2	yes	no	0	1	0	3	0			1			18.851	18.851	2	0.0057151	12145	DP1063-3	87.298	66.299			1.3523	1.0859	NaN	1	0	Median	10971000	4213200	6758200	2355	39	2212	4999	10910;10911	10910	28	2	9606
MVNHFIAEFK	1	0	Oxidation (M)	1250.6118	0.61177885	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			17.542	17.542	2	5.6909E-06	10217	DP1063-3	140.75	112.35			3.3519	2.6916	NaN	1	0	Median	66943000	17175000	49768000	2356	153	2213	5000	10912;10913;10914;10915	10912	167	4	9606
MVNHFIAEFK	1	0	Unmodified	1234.6169	0.61686423	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			18.186	18.186	2;3	0.00065853	11179	DP1063-3	128.28	61.982			3.8129	3.0618	NaN	1	0	Median	53442000	7091600	46350000	2357	153	2213	5001;5002	10916;10917;10918;10919	10919		4	9606
MVPAGMGAGLER	0	1	2 Oxidation (M)	1219.5689	0.56892776	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	2.5	0.5		1	1			14.734	14.734	2	0.0031981	5061	DP1063-2	74.944	47.897			1.1606	0.86553	7.3465	2	0	Median	61723000	29014000	32708000	2358	323	2214	5003;5004	10920;10921;10922;10923;10924;10925;10926;10927	10922	412;413	8	9606
MVPAGMGAGLER	0	1	Oxidation (M)	1203.574	0.57401314	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	2	0		1				16.916	16.916	2	0.040753	7759	DP1063-2	80.455	39.731			NaN	NaN	NaN	0	0	Median	5982900	5982900	0	2359	323	2214	5005	10928	10928	412;413	1	9606
MVQEAEKYKAEDEK	3	0	Oxidation (M)	1712.7927	0.79271593	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	2	3	0			1			12.79	12.79	3	0.00063698	4057	DP1063-3	111.66	67.205			NaN	NaN	NaN	0	0	Median	2462900	0	2462900	2360	153	2215	5006	10929;10930	10930	168	2	9606
MVQEAEKYKAEDEVQR	2	1	Oxidation (M)	1967.9259	0.92585536	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	2	3	0			2			14.055	14.055	2;3	0.00014705	5511	DP1063-3	150.76	150.76			3.0692	3.0738	NaN	1	0	Median	42366000	10428000	31938000	2361	149	2216	5007;5008	10931;10932;10933;10934;10935	10931	158	5	9606
MVQEAEKYKAEDEVQR	2	1	Unmodified	1951.9309	0.93094074	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			14.636	14.636	3	0.00044141	6329	DP1063-3	102.64	84.316			3.0917	3.0964	NaN	1	0	Median	16468000	4570400	11897000	2362	149	2216	5009	10936;10937;10938	10936		3	9606
MVQFEENGRK	1	1	Oxidation (M)	1252.587	0.58702067	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	1	3	0			1			13.584	13.584	2	0.037931	4991	DP1063-3	72.547	24.89			NaN	NaN	NaN	0	0	Median	0	0	0	2363	304	2217	5010	10939	10939	370	1	9606
MVSALQQQQQQQQR	0	1	Oxidation (M)	1715.8373	0.83731513	657	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	1	0	1	0	1					14.174	14.174	2	0.00038343	3594	DP1063-1	150.04	103.25			NaN	NaN	NaN	0	0	Median	502320	0	502320	2364	657	2218	5011	10940;10941	10941	768	2	9606
MVVESAYEVIK	1	0	Oxidation (M)	1282.6479	0.64788959	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	1	0	4	0				1		18.105	18.105	2	1.1294E-05	10606	DP1063-4	133.99	109.47			2.0947	1.4499	NaN	1	0	Median	27495000	10012000	17482000	2365	127	2219	5012	10942;10943;10944;10945	10942	121	4	9606
MVVESAYEVIK	1	0	Unmodified	1266.653	0.65297497	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		19.11	19.11	2	0.0031586	12047	DP1063-4	99.013	64.84			2.9001	2.0074	NaN	1	0	Median	8735100	2289200	6445900	2366	127	2219	5013	10946;10947;10948	10946		3	9606
MYRYLAKALLPSR	1	2	Acetyl (Protein N-term);Oxidation (M)	1638.8916	0.89158253	307	P49448	GLUD2	Glutamate dehydrogenase 2, mitochondrial	yes	yes	1	1	2	4	0				1		19.517	19.517	2	0.043196	12590	DP1063-4	43.512	14.449			NaN	NaN	NaN	0	0	Median	3132300	0	3132300	2367	307	2220	5014	10949	10949	376	1	9606
NAAENMLEILGFK	1	0	Unmodified	1448.7334	0.73335055	87	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3	0			1			25.103	25.103	2	0.01888	20159	DP1063-3	83.397	38.972			NaN	NaN	NaN	0	0	Median	0	0	0	2368	87	2221	5015	10950	10950		1	9606
NADMSEEMQQDSVECATQALEK	1	0	2 Oxidation (M)	2545.0254	0.025447346	405	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	2	0	5	0					2	18.509	18.509	2;3	4.5426E-15	11414	DP1063-5	209.33	194.34			NaN	NaN	NaN	0	0	Median	13507000	0	13507000	2369	405	2222	5016;5017	10951;10952;10953;10954;10955	10951	498;499	5	9606
NAGNCLSPAVIVGLLK	1	0	Unmodified	1624.8971	0.89706184	57	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			23.307	23.307	2	0.0029483	17940	DP1063-3	137.16	137.16			1.8661	1.4984	NaN	1	0	Median	7834900	2174100	5660800	2370	57	2223	5018	10956;10957	10957		2	9606
NAGVEGSLIVEK	1	0	Unmodified	1214.6507	0.65066678	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.315	17.315	2	0.00085973	9999	DP1063-3	115.7	87.835			2.698	2.1665	NaN	1	0	Median	39874000	13161000	26714000	2371	151	2224	5019	10958;10959;10960	10959		3	9606
NAHSATTWSGQYVGGAEAR	0	1	Unmodified	1961.898	0.89800113	32	CON__Streptavidin			yes	yes	0	0	0	4.59	0.834		1	2	2	17	23.189	23.189	2;3;4	5.4324E-184	23372	DP1063-5	357.22	301.18		+	NaN	NaN	NaN	0	0	Median	658910000	658910000	0	2372	32	2225	5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035;5036;5037;5038;5039;5040;5041	10961;10962;10963;10964;10965;10966;10967;10968;10969;10970;10971;10972;10973;10974;10975;10976;10977;10978;10979;10980;10981;10982;10983;10984;10985;10986;10987;10988;10989;10990;10991;10992;10993;10994;10995;10996;10997	10991		37	
NAIDDGCVVPGAGAVEVAMAEALIK	1	0	Oxidation (M)	2485.2193	0.21926019	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	1	0	3	0			1			23.032	23.032	2	0.0013267	17601	DP1063-3	86.179	59.45			NaN	NaN	NaN	0	0	Median	5035100	0	5035100	2373	268	2226	5042	10998;10999	10998	324	2	9606
NALANPLYCPDYR	0	1	Unmodified	1565.7297	0.72966216	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		19.336	19.336	2	0.00047341	12360	DP1063-4	128.01	91.681			NaN	NaN	NaN	0	0	Median	5429000	0	5429000	2374	198	2227	5043	11000	11000		1	9606
NALESYAFNMK	1	0	Oxidation (M)	1302.5914	0.59143734	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			18.416	18.416	2	3.9864E-05	11433	DP1063-3	129.38	129.38			3.4905	2.8029	NaN	1	0	Median	194870000	44176000	150700000	2375	149	2228	5044	11001;11002;11003;11004	11001	159	4	9606
NALESYAFNMK	1	0	Unmodified	1286.5965	0.59652272	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			19.882	19.882	2	1.2233E-07	13518	DP1063-3	175.44	175.44			3.8017	3.0528	NaN	1	0	Median	67566000	14382000	53184000	2376	149	2228	5045	11005;11006	11006		2	9606
NAPAIIFIDELDAIAPK	1	0	Unmodified	1809.9877	0.98765098	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				25.861	25.861	2	0.00081096	19445	DP1063-2	124.12	124.12			1.6836	1.4085	NaN	1	0	Median	6553600	2512100	4041500	2377	337	2229	5046	11007;11008;11009;11010;11011	11007		5	9606
NAPNDASYDAVR	0	1	Unmodified	1291.5793	0.57929275	567	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					15.212	15.212	2	0.012043	4841	DP1063-1	83.397	55.315			1.5682	1.3687	NaN	1	0	Median	1720300	624470	1095900	2378	567	2230	5047	11012;11013;11014;11015	11014		4	9606
NASEMIDKLTLTFNR	1	1	Oxidation (M)	1767.8825	0.88253399	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	1	1	4	0				1		19.462	19.462	3	0.010129	12547	DP1063-4	53.008	28.599			1.96	1.9057	NaN	1	0	Median	5809500	1432800	4376700	2379	258	2231	5048	11016;11017	11017	308	2	9606
NASTFEDVTQVSSAYQK	1	0	Unmodified	1873.8694	0.86938634	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	3	1		1		1		18.915	18.915	2	0.00066196	10623	DP1063-2	120.59	87.531			NaN	NaN	NaN	0	0	Median	10332000	0	10332000	2380	488	2232	5049;5050	11018;11019	11018		2	9606
NAVITVPAYFNDSQR	0	1	Unmodified	1693.8424	0.84238373	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			20.333	20.333	2	1.375E-20	14122	DP1063-3	216.91	169.63			1.2995	1.02	NaN	1	0	Median	59241000	25096000	34145000	2381	263	2233	5051	11020;11021	11021		2	9606
NCISTVVHQGLIR	0	1	Unmodified	1495.7929	0.79293112	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.941	17.941	3	0.0036894	7793	DP1063-1	71.268	71.268			2.5419	2.0346	NaN	1	0	Median	5085700	1933000	3152700	2382	420	2234	5052	11022;11023;11024	11022		3	9606
NCIVLIDSTPYR	0	1	Unmodified	1449.7286	0.72859953	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.719	19.719	2	5.3436E-06	12992	DP1063-5	148.91	76.48			NaN	NaN	NaN	0	0	Median	5068600	0	5068600	2383	368	2235	5053	11025	11025		1	9606
NCLTNFHGMDLTR	0	1	Oxidation (M)	1593.7028	0.70279548	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		16.873	16.873	3	0.0088292	8981	DP1063-4	57.106	45.667			2.3878	1.606	NaN	1	0	Median	18376000	5536400	12840000	2384	355	2236	5054	11026;11027	11027	453	2	9606
NDEELNKLLGK	2	0	Unmodified	1271.6721	0.67213051	145	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	yes	no	0	0	1	5	0					2	18.195	18.195	2;3	8.4309E-14	11031	DP1063-5	197.79	116.27			1.6572	1.6192	NaN	1	0	Median	81156000	19927000	61229000	2385	145	2237	5055;5056	11028;11029;11030;11031	11029		4	9606
NDFTEEEEAQVR	0	1	Unmodified	1465.6321	0.63211618	407	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	5	0					2	16.984	16.984	2	3.2792E-06	9414	DP1063-5	157.78	122.63			NaN	NaN	NaN	0	0	Median	0	0	0	2386	407	2238	5057;5058	11032;11033	11032		2	9606
NDLSPASSGNAVYDFFIGR	0	1	Unmodified	2028.9541	0.95411902	492	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	3.33	0.471			2	1		23.951	23.951	2	2.0223E-07	18773	DP1063-3	187.74	154.68			NaN	NaN	NaN	0	0	Median	7168800	0	7168800	2387	492	2239	5059;5060;5061	11034;11035;11036;11037;11038	11034		5	9606
NDSVVAGGGAIEMELSK	1	0	Oxidation (M)	1691.8036	0.80361496	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	3	0			1			19.26	19.26	2	0.018937	12664	DP1063-3	92.939	51.399			NaN	NaN	NaN	0	0	Median	8178900	0	8178900	2388	601	2240	5062	11039	11039	732	1	9606
NDTKEDVFVHQTAIK	2	0	Unmodified	1743.8792	0.87916317	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	no	no	0	0	1	4	0				1		15.659	15.659	3	0.0012193	7465	DP1063-4	136.39	115.64			1.8015	1.8709	NaN	1	0	Median	16439000	5294400	11144000	2389	410	2241	5063	11040;11041;11042;11043;11044	11041		5	9606
NDVLDSLGISPDLLPEDFVR	0	1	Unmodified	2213.1216	0.12157828	641	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	4	0				2		25.745	25.745	2	0.0029562	19996	DP1063-4	113.59	92.029			NaN	NaN	NaN	0	0	Median	0	0	0	2390	641	2242	5064;5065	11045;11046	11045		2	9606
NECFLSHK	1	0	Unmodified	1033.4651	0.46511462	14	CON__P02769			yes	yes	0	0	0	3	0			1			14.363	14.363	2	0.015474	5928	DP1063-3	98.629	48.605		+	NaN	NaN	NaN	0	0	Median	26352000	26352000	0	2391	14	2243	5066	11047;11048	11047		2	9606
NECFLSHKDDSPDLPK	2	0	Unmodified	1900.8625	0.86252683	14	CON__P02769			yes	yes	0	0	1	2.4	0.49		3	2			16.313	16.313	2;3;4	6.9082E-16	8521	DP1063-3	218.6	182.92		+	NaN	NaN	NaN	0	0	Median	192740000	192740000	0	2392	14	2244	5067;5068;5069;5070;5071	11049;11050;11051;11052;11053;11054;11055;11056	11055		8	9606
NEEDAAELVALAQAVNAR	0	1	Unmodified	1882.9385	0.93846896	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		4				22.765	22.765	2;3	4.0025E-125	15771	DP1063-2	323.44	299.69			4.0319	2.926	NaN	1	0	Median	21347000	2800900	18546000	2393	195	2245	5072;5073;5074;5075	11057;11058;11059;11060;11061;11062	11057		6	9606
NELESYAYSLK	1	0	Unmodified	1315.6296	0.62959699	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			19.475	19.475	2	1.4814E-05	12958	DP1063-3	139.43	104.16			2.8324	2.2744	NaN	1	0	Median	24295000	5237300	19057000	2394	152	2246	5076	11063;11064;11065	11064		3	9606
NELSGALTGLTR	0	1	Unmodified	1230.6568	0.65681479	216	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				19.652	19.652	2	1.8367E-05	11641	DP1063-2	163.66	134.94			2.3452	1.6949	NaN	1	0	Median	18869000	5565500	13304000	2395	216	2247	5077	11066;11067	11066		2	9606
NEQDAYAINSYTR	0	1	Unmodified	1543.6903	0.69029976	205	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	4	0				2		17.254	17.254	2	0.0018356	9685	DP1063-4	112.84	70.496			NaN	NaN	NaN	0	0	Median	9094800	0	9094800	2396	205	2248	5078;5079	11068;11069;11070	11070		3	9606
NFDLTAIPCANHK	1	0	Unmodified	1499.7191	0.71909747	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	0.471	1	2				18.549	18.549	2;3	0.00018652	8579	DP1063-1	105.03	92.225			1.1801	1.1263	19.118	3	0	Plateau	286630000	124870000	161760000	2397	460	2249	5080;5081;5082	11071;11072;11073;11074;11075;11076;11077;11078;11079;11080;11081	11074		11	9606
NFEWVAER	0	1	Unmodified	1049.493	0.49304393	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	4	0				1		19.166	19.166	2	0.019314	12125	DP1063-4	96.253	43.537			NaN	NaN	NaN	0	0	Median	4123200	0	4123200	2398	194	2250	5083	11082	11082		1	9606
NFGIGQDIQPK	1	0	Unmodified	1215.6248	0.62478638	382	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		18.103	18.103	2	0.00012458	10601	DP1063-4	128.6	128.6			1.5629	1.0818	NaN	1	0	Median	12199000	4284800	7914200	2399	382	2251	5084	11083;11084;11085;11086;11087	11084		5	9606
NFILDQTNVSAAAQR	0	1	Unmodified	1646.8376	0.8376327	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				19.315	19.315	2	1.8713E-20	11142	DP1063-2	214.04	214.04			2.2101	1.7714	NaN	1	0	Median	76858000	24221000	52637000	2400	429	2252	5085	11088;11089;11090;11091	11089		4	9606
NFYFLEMNTR	0	1	Oxidation (M)	1349.6074	0.60742176	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			20.587	20.587	2	0.0037265	14418	DP1063-3	91.265	59.843			1.4318	1.0807	9.8797	2	0	Median	80375000	30933000	49442000	2401	110	2253	5086;5087	11092;11093;11094;11095	11094	87	4	9606
NFYFLEMNTR	0	1	Unmodified	1333.6125	0.61250714	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			21.938	21.938	2	1.0952E-07	16155	DP1063-3	172.21	125.79			1.614	1.1989	9.6537	2	0	Median	38423000	15686000	22737000	2402	110	2253	5088;5089	11096;11097;11098;11099	11098		4	9606
NFYQEHPDLAR	0	1	Unmodified	1388.6473	0.64731274	178	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			16.328	16.328	2	0.0093848	8633	DP1063-3	96.342	68.518			NaN	NaN	NaN	0	0	Median	0	0	0	2403	178	2254	5090	11100	11100		1	9606
NGIAFMGPPSQAMWALGDK	1	0	2 Oxidation (M)	2021.9339	0.93391763	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.701	20.701	2	3.8935E-05	11205	DP1063-1	139.66	111.46			1.2529	1.074	NaN	1	0	Median	34497000	15386000	19111000	2404	460	2255	5091	11101;11102;11103;11104	11104	592;593	4	9606
NGIAFMGPPSQAMWALGDK	1	0	Unmodified	1989.9441	0.94408839	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.12	23.12	2	0.00025837	13982	DP1063-1	101.36	101.36			1.1709	0.93076	NaN	1	0	Median	4085900	2242400	1843500	2405	460	2255	5092	11105;11106;11107;11108	11105		4	9606
NGPEFEAR	0	1	Unmodified	918.41954	0.41954463	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				14.915	14.915	2	0.042742	5279	DP1063-2	77.923	60.959			1.1384	0.84715	NaN	1	0	Median	30415000	14629000	15786000	2406	513	2256	5093	11109;11110	11109		2	9606
NGQDLGVAFK	1	0	Unmodified	1047.5349	0.53490874	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		2				17.555	17.555	2	0.039348	8741	DP1063-2	98.582	49.224			NaN	NaN	NaN	0	0	Median	0	0	0	2407	429	2257	5094;5095	11111;11112	11111		2	9606
NGQPESEDKYGTTPPQLDADSSYFLYSK	2	0	Unmodified	3136.4149	0.41491935	9	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	3	0			1			20.108	20.108	3	0.00074596	13833	DP1063-3	75.193	55.302		+	NaN	NaN	NaN	0	0	Median	9678200	9678200	0	2408	9	2258	5096	11113;11114	11114		2	
NGSEADIDEGLYSR	0	1	Unmodified	1524.6692	0.66922997	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				17.638	17.638	2	0.010994	8888	DP1063-2	88.338	48.279			NaN	NaN	NaN	0	0	Median	0	0	0	2409	195	2259	5097	11115	11115		1	9606
NHEEEMKDLR	1	1	Unmodified	1299.5877	0.58774895	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2	0		1				13.402	13.402	3	0.0088542	3356	DP1063-2	88.056	71.031		+	NaN	NaN	NaN	0	0	Median	3863800	3863800	0	2410	19	2260	5098	11116	11116		1	9606
NHKEEMSQLTGQNSGDVNVEINVAPGK	2	0	Oxidation (M)	2910.3778	0.37776276	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	3	0			2			16.606	16.606	3;4	4.8931E-36	8959	DP1063-3	242.63	217.41		+	NaN	NaN	NaN	0	0	Median	47502000	47502000	0	2411	251	2261	5099;5100	11117;11118;11119;11120;11121	11117	289	5	9606
NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK	3	0	Oxidation (M)	3367.6314	0.63141126	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	2	3	0			2			16.961	16.961	3	2.5574E-32	9451	DP1063-3	216.49	172.8		+	NaN	NaN	NaN	0	0	Median	7539800	7539800	0	2412	251	2262	5101;5102	11122;11123;11124;11125	11123	289	4	9606
NHPGLLLMDTTFR	0	1	Oxidation (M)	1529.766	0.76604767	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.14	0.639	1	4	2			19.256	19.256	2;3	8.6825E-05	10182	DP1063-2	148.89	148.89			1.392	1.1349	13.451	4	0	Median	1136400000	467670000	668750000	2413	154	2263	5103;5104;5105;5106;5107;5108;5109	11126;11127;11128;11129;11130;11131;11132;11133;11134;11135;11136;11137;11138;11139;11140;11141;11142;11143;11144;11145;11146	11130	189	21	9606
NHPGLLLMDTTFR	0	1	Unmodified	1513.7711	0.77113304	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			20.188	20.188	3	2.4718E-14	12372	DP1063-2	205.31	205.31			1.442	1.1619	1.9347	2	0	Median	305360000	128700000	176660000	2414	154	2263	5110;5111	11147;11148;11149;11150;11151;11152;11153;11154	11149		8	9606
NIAFFSTNCVEGTAR	0	1	Unmodified	1685.7832	0.78315429	107	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				20.302	20.302	2	0.050526	12531	DP1063-2	71.607	28.889			NaN	NaN	NaN	0	0	Median	0	0	0	2415	107	2264	5112	11155	11155		1	9606
NIAQIAVVMGSCTAGGAYVPAMADENIIVR	0	1	2 Oxidation (M)	3122.5199	0.51987566	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	2	0	3	0			1			21.307	21.307	3	4.3866E-15	15480	DP1063-3	107.45	107.45			1.3373	1.0201	NaN	1	0	Median	40861000	15129000	25732000	2416	624	2265	5113	11156;11157;11158	11156	751;752	3	9606
NIDDGTSDRPYSHALVAGIDR	0	2	Unmodified	2271.088	0.087986745	358	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	5	0					2	17.558	17.558	3;4	3.9806E-05	10166	DP1063-5	89.557	73.791			1.4169	1.2057	22.748	2	0	Median	39209000	16188000	23021000	2417	358	2266	5114;5115	11159;11160;11161;11162;11163	11160		5	9606
NIEDVIAQGIGK	1	0	Unmodified	1255.6772	0.67721588	114	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	21.135	21.135	2	0.00040122	14799	DP1063-5	146.11	97.312			1.7001	1.4391	NaN	1	0	Median	10021000	3907000	6114100	2418	114	2267	5116	11164;11165	11164		2	9606
NIEELQQQNQR	0	1	Unmodified	1398.6852	0.68515481	161	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	0	1					15.417	15.417	2	2.8597E-06	5043	DP1063-1	166.16	97.938			NaN	NaN	NaN	0	0	Median	1275400	0	1275400	2419	161	2268	5117	11166;11167	11166		2	9606
NIELICQENEGENDPVLQR	0	1	Unmodified	2269.0645	0.06447411	514	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	4	0				1		19.722	19.722	2	1.4156E-07	12824	DP1063-4	190.27	140.97			NaN	NaN	NaN	0	0	Median	4772800	0	4772800	2420	514	2269	5118	11168;11169	11169		2	9606
NIEMTQEDVR	0	1	Oxidation (M)	1249.5609	0.5608655	76	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	1	0	1	0	1					14.597	14.597	2	0.0040315	4056	DP1063-1	111.46	80.768			NaN	NaN	NaN	0	0	Median	2508300	0	2508300	2421	76	2270	5119	11170;11171	11171	58	2	9606
NIGVDNPAAK	1	0	Unmodified	997.51926	0.51925868	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			14.924	14.924	2	0.0032891	6635	DP1063-3	98.582	50.021			1.7807	1.4299	NaN	1	0	Median	34707000	11854000	22852000	2422	419	2271	5120	11172;11173	11172		2	9606
NIIHGSDSVESAEK	1	0	Unmodified	1484.7107	0.71070086	171	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	5	0					2	14.598	14.598	2;3	0.00015635	6615	DP1063-5	136.53	82.774			3.37	2.8527	NaN	1	0	Median	23976000	5434100	18542000	2423	171	2272	5121;5122	11174;11175;11176;11177;11178;11179	11179		6	9606
NIIHGSDSVK	1	0	Unmodified	1068.5564	0.55637247	196	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	5	0					1	13.486	13.486	2	0.047208	5252	DP1063-5	63.426	36.379			2.1812	1.8464	NaN	1	0	Median	12089000	3276600	8812000	2424	196	2273	5123	11180	11180		1	9606
NIIVGFAR	0	1	Unmodified	888.51814	0.51813647	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		18.874	18.874	2	9.2963E-07	12070	DP1063-3	150.02	74.709			1.5223	1.2569	18.548	2	0	Median	465670000	179540000	286130000	2425	111	2274	5124;5125	11181;11182;11183;11184;11185;11186;11187	11182		7	9606
NILLTNEQLESAR	0	1	Unmodified	1499.7944	0.79437091	622	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		18.912	18.912	2	1.4234E-05	11770	DP1063-4	172.21	172.21			1.3972	0.90774	NaN	1	0	Median	14010000	5299300	8710400	2426	622	2275	5126	11188;11189;11190;11191;11192	11189		5	9606
NIPGITLLNVSK	1	0	Unmodified	1267.75	0.7499869	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3.5	0.5			1	1		21.153	21.153	2	0.0015343	14683	DP1063-4	108.98	66.241			2.2622	1.5658	NaN	1	0	Median	24011000	5159200	18851000	2427	259	2276	5127;5128	11193;11194;11195;11196;11197;11198	11196		6	9606
NIPLLFLQNITGFMVGR	0	1	Oxidation (M)	1948.0604	0.060438772	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.8	0.748			2	2	1	25.973	25.973	2;3	1.7448E-22	21083	DP1063-3	222.72	222.72			1.2844	0.87604	12.905	5	0	Median	86641000	36235000	50406000	2428	624	2277	5129;5130;5131;5132;5133	11199;11200;11201;11202;11203;11204;11205;11206;11207;11208;11209;11210;11211;11212;11213	11199	753	15	9606
NIPLLFLQNITGFMVGR	0	1	Unmodified	1932.0655	0.06552415	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		27.643	27.643	2	3.0197E-14	22851	DP1063-3	193.28	169.61			1.4684	1.0818	NaN	1	0	Median	11587000	4298800	7288700	2429	624	2277	5134;5135	11214;11215;11216;11217;11218	11217		5	9606
NIRDDEGFIIR	0	2	Unmodified	1346.6943	0.69426293	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		1				18.201	18.201	3	0.0009674	9636	DP1063-2	122.34	67.086			NaN	NaN	NaN	0	0	Median	50676000	0	50676000	2430	654	2278	5136	11219;11220	11220		2	9606
NIRDNEEKDSAFR	1	2	Unmodified	1592.7543	0.75429701	572	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	yes	no	0	0	2	2	0		1				14.006	14.006	3	0.010445	4199	DP1063-2	63.292	63.292			3.6121	4.0982	NaN	1	0	Median	6496200	1285100	5211000	2431	572	2279	5137	11221;11222	11222		2	9606
NITYLPAGQSVLLQLPQ	0	0	Unmodified	1854.0251	0.025099124	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		24.434	24.434	2	0.00096318	18606	DP1063-4	160.86	94.297			NaN	NaN	NaN	0	0	Median	0	0	0	2432	249	2280	5138	11223;11224	11224		2	9606
NIVEAAAVR	0	1	Unmodified	941.52943	0.52942943	392	Q5JNZ5;P62854	RPS26P11;RPS26	Putative 40S ribosomal protein S26-like 1;40S ribosomal protein S26	yes	no	0	0	0	5	0					1	16.077	16.077	2	0.0058179	8388	DP1063-5	104.75	35.571			2.2388	1.6721	NaN	1	0	Median	52536000	14305000	38232000	2433	392	2281	5139	11225;11226;11227;11228	11226		4	9606
NIYMQLVR	0	1	Oxidation (M)	1051.5485	0.54845032	687				yes	yes	0	1	0	3	0			1			20.627	20.627	2	0.045076	14586	DP1063-3	64.803	24.736	+		2.2388	1.6229	NaN	1	0	Median	13924000	3802400	10121000	2434	687	2282	5140	11229	11229	792	1	9606
NKFPGDSVVTGR	1	1	Unmodified	1275.6571	0.65714914	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			15.762	15.762	2;3	0.00018837	7830	DP1063-3	138.89	113.19			1.3186	1.196	2.6089	2	0	Median	173340000	71201000	102140000	2435	111	2283	5141;5142	11230;11231;11232;11233;11234;11235;11236;11237	11237		8	9606
NKLNDLEDALQQAK	2	0	Unmodified	1598.8264	0.82639932	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.33	0.943	1		2			19.517	19.517	2;3	6.0352E-10	12936	DP1063-3	222.72	152.32		+	NaN	NaN	NaN	0	0	Median	90464000	90464000	0	2436	101	2284	5143;5144;5145	11238;11239;11240;11241;11242	11240		5	9606
NKLNDLEDALQQAKEDLAR	2	1	Unmodified	2183.1182	0.11822424	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	3	0			1			21.821	21.821	3	4.2442E-26	16079	DP1063-3	228.32	189.43		+	NaN	NaN	NaN	0	0	Median	45448000	45448000	0	2437	101	2285	5146	11243;11244	11243		2	9606
NKLNDLEEALQQAK	2	0	Unmodified	1612.842	0.84204938	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	0			2			19.887	19.887	2;3	3.9858E-16	13492	DP1063-3	222.72	140.31		+	NaN	NaN	NaN	0	0	Median	23783000	23783000	0	2438	22	2286	5147;5148	11245;11246	11245		2	9606
NKLNDLEEALQQAKEDLAR	2	1	Unmodified	2197.1339	0.1338743	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	2	2	0		1				22.059	22.059	3	0.018348	14831	DP1063-2	77.505	44.152		+	NaN	NaN	NaN	0	0	Median	0	0	0	2439	22	2287	5149	11247	11247		1	9606
NKYEDEINKR	2	1	Unmodified	1307.647	0.64697839	101;15;20;30	CON__P05787;P05787;CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__Q8VED5;CON__H-INV:HIT000016045;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT8;KRT5;KRT6C;KRT6A;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 1	no	no	0	0	2	2.25	0.968	2	3	2	1		13.805	13.805	2;3	8.4507E-05	5168	DP1063-3	123.96	71.467		+	0.054249	0.055202	133.17	2	0	Median	385250000	372730000	12514000	2440	15;20;30;101	2288	5150;5151;5152;5153;5154;5155;5156;5157	11248;11249;11250;11251;11252;11253;11254;11255;11256;11257;11258;11259;11260	11256		13	9606
NLAMEATYINHNFSQQCLR	0	1	Oxidation (M)	2325.063	0.063034322	54	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	1	0	3	0			1			19.482	19.482	3	0.010719	12929	DP1063-3	50.392	32.529			1.7504	1.3033	NaN	1	0	Median	10270000	5004700	5265300	2441	54	2289	5158	11261	11261	47	1	9606
NLAMGVNLTSMSK	1	0	2 Oxidation (M)	1396.669	0.66903574	157	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	2	0	4	0				1		16.812	16.812	2	0.0013248	8850	DP1063-4	90.913	68.333			1.903	1.3172	NaN	1	0	Median	7198400	2440900	4757400	2442	157	2290	5159	11262;11263	11263	196;197	2	9606
NLDIERPTYTNLNR	0	2	Unmodified	1717.8747	0.87474649	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	3.5	0.5			2	2		17.579	17.579	2;3	3.9172E-20	10261	DP1063-3	216.84	167.37			1.7607	1.5942	2.3767	4	0	Median	916540000	314740000	601800000	2443	413;605	2291	5160;5161;5162;5163	11264;11265;11266;11267;11268;11269;11270;11271;11272;11273;11274;11275;11276;11277;11278	11271		15	9606
NLDLDSIIAEVK	1	0	Unmodified	1328.7187	0.71874635	22;20	CON__P35908v2;P35908;CON__P35908;CON__Q5XKE5;Q5XKE5;CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__Q8VED5	KRT2;KRT79;KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	0	3	0.816		1	1	1		23.406	23.406	2	4.2643E-06	18050	DP1063-3	167.09	119.22		+	NaN	NaN	NaN	0	0	Median	69305000	69305000	0	2444	22;20	2292	5164;5165;5166	11279;11280;11281;11282;11283;11284	11281		6	9606
NLEAVETLGSTSTICSDK	1	0	Unmodified	1923.9095	0.9095366	107	P05023;P13637;P50993;Q13733	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	yes	no	0	0	0	2	0		1				19.262	19.262	2	0.00030079	11107	DP1063-2	147.35	109.67			NaN	NaN	NaN	0	0	Median	0	0	0	2445	107	2293	5167	11285	11285		1	9606
NLEISIDTLMAK	1	0	Oxidation (M)	1362.7065	0.7064671	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	1	0	2	0		1				20.48	20.48	2	0.015938	12739	DP1063-2	88.056	11.775			NaN	NaN	NaN	0	0	Median	13362000	0	13362000	2446	654	2294	5168	11286	11286	764	1	9606
NLEVSSCVGSGGSSEAR	0	1	Unmodified	1694.753	0.75297638	614	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	1	0	1					15.941	15.941	2	3.674E-11	5603	DP1063-1	198.57	137.36			NaN	NaN	NaN	0	0	Median	1102200	0	1102200	2447	614	2295	5169	11287;11288	11287		2	9606
NLFEDQNTLTSICEK	1	0	Unmodified	1810.8407	0.84072875	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				20.346	20.346	2	0.00018742	12602	DP1063-2	160.56	123.89			1.1499	0.96206	NaN	1	0	Median	10486000	3852700	6632900	2448	336	2296	5170	11289;11290;11291	11289		3	9606
NLLTVTSSDEMMK	1	0	2 Oxidation (M)	1499.6847	0.68474538	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	1	0	1					17.418	17.418	2	0.01629	7167	DP1063-1	82.494	37.333			NaN	NaN	NaN	0	0	Median	3054100	0	3054100	2449	420	2297	5171	11292	11292	529;530	1	9606
NLLVTMLIDQLCGR	0	1	Oxidation (M)	1660.864	0.86404715	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				24.992	24.992	2	1.5071E-05	15964	DP1063-1	167.84	113.5			1.4957	1.1587	1.3614	2	0	Median	18950000	7024200	11926000	2450	460	2298	5172;5173	11293;11294;11295;11296;11297;11298;11299;11300;11301;11302	11297	594	10	9606
NLLVTMLIDQLCGR	0	1	Unmodified	1644.8691	0.86913253	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					26.425	26.425	2	0.0034171	17399	DP1063-1	101.47	52.828			NaN	NaN	NaN	0	0	Median	488390	488390	0	2451	460	2298	5174;5175	11303;11304	11304		2	9606
NLPFDFTWK	1	0	Unmodified	1166.576	0.57604528	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0.816		1	1	1		23.071	23.071	2	0.0066958	16086	DP1063-2	101.72	101.72			1.1265	0.89772	15.207	3	0	Plateau	34169000	14539000	19630000	2452	323	2299	5176;5177;5178	11305;11306;11307;11308;11309;11310;11311	11305		7	9606
NLPLPPPPPPR	0	1	Unmodified	1193.6921	0.69207809	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			17.897	17.897	2	0.0131	10731	DP1063-3	80.438	48.118			1.2353	0.92433	NaN	1	0	Median	9712300	4204900	5507400	2453	362	2300	5179	11312;11313	11313		2	9606
NLQDAMQVCR	0	1	Oxidation (M)	1249.5543	0.55434033	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			14.712	14.712	2	0.00045218	6407	DP1063-3	114.89	94.057			3.9348	2.8973	NaN	1	0	Median	11657000	2888600	8768900	2454	304	2301	5180	11314;11315	11314	371	2	9606
NLQEAEEWYK	1	0	Unmodified	1308.5986	0.59863121	136	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	0	0	3.5	0.5			1	1		18.843	18.843	2	0.0078636	12096	DP1063-3	89.047	54.661			2.1856	1.755	NaN	1	0	Median	14222000	5209600	9012000	2455	136	2302	5181;5182	11316;11317	11316		2	9606
NLQNLLILTAIK	1	0	Unmodified	1352.8391	0.83913625	428	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1.5	0.5	1	1				23.482	23.482	2	0.0016153	14402	DP1063-1	108.31	108.31			1.7216	1.3935	NaN	1	0	Median	7658000	1397000	6261000	2456	428	2303	5183;5184	11318;11319;11320;11321	11318		4	9606
NLQTVNVDEN	0	0	Unmodified	1144.536	0.53603095	396	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	17.065	17.065	2	0.0020476	9547	DP1063-5	116.25	64.723			NaN	NaN	NaN	0	0	Median	0	0	0	2457	396	2304	5185	11322	11322		1	9606
NLQYYDISAK	1	0	Unmodified	1213.5979	0.59790293	387	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	17.994	17.994	2	0.00094863	10710	DP1063-5	113.71	61.225			2.8893	2.4458	NaN	1	0	Median	22311000	5859700	16452000	2458	387	2305	5186	11323;11324;11325;11326	11323		4	9606
NLVPGESVYGEK	1	0	Unmodified	1290.6456	0.6455814	193	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		17.453	17.453	2	0.001373	9779	DP1063-4	122.69	63.341			NaN	NaN	NaN	0	0	Median	4933800	0	4933800	2459	193	2306	5187	11327;11328	11327		2	9606
NLYHSEAFSINFR	0	1	Unmodified	1596.7685	0.76849051	21	CON__P34955			yes	yes	0	0	0	3	0			1			19.537	19.537	3	1.9058E-05	13047	DP1063-3	144.51	119.57		+	NaN	NaN	NaN	0	0	Median	20130000	20130000	0	2460	21	2307	5188	11329;11330	11329		2	
NLYIISVK	1	0	Unmodified	948.56442	0.56441796	388	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	19.321	19.321	2	0.047653	12524	DP1063-5	75.738	39.553			2.582	2.1856	NaN	1	0	Median	33647000	8783900	24863000	2461	388	2308	5189	11331	11331		1	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	0	1	Oxidation (M)	2204.893	0.89299211	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4	0				2		16.291	16.291	2	2.5502E-20	8258	DP1063-4	187.75	161			1.8111	1.1228	NaN	1	0	Median	9711900	2787700	6924200	2462	197	2309	5190;5191	11332;11333;11334;11335;11336	11333	250	5	9606
NMMAACDPR	0	1	Oxidation (M)	1080.4151	0.41506966	414;129;480;471	P07437;A6NNZ2;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	3	0			1			13.62	13.62	2	0.02262	5036	DP1063-3	66.692	45.392			2.0554	1.4919	NaN	1	0	Median	21461000	7776600	13685000	2463	129;414;480;471	2310	5192	11337;11338	11338	132	2	9606
NMMQLCTRCLSNCTKK	2	1	Oxidation (M)	2059.9094	0.90937591	468	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	1	2	5	0					1	18.056	18.056	2	0.020369	10851	DP1063-5	47.712	47.712			0.15732	0.16212	NaN	1	0	Median	55484000	48948000	6536500	2464	468	2311	5193	11339	11339	612	1	9606
NMQDMVEDYR	0	1	2 Oxidation (M)	1331.5122	0.51220074	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	2.5	1.12	1	1	1	1		15.165	15.165	2	0.00010466	6877	DP1063-3	132.88	120.09		+	NaN	NaN	NaN	0	0	Median	62121000	62121000	0	2465	101	2312	5194;5195;5196;5197	11340;11341;11342;11343;11344;11345;11346	11345	73;74	7	9606
NMQDMVEDYR	0	1	Oxidation (M)	1315.5173	0.51728612	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	3	0			1			16.979	16.979	2	0.019984	9519	DP1063-3	92.051	75.334		+	NaN	NaN	NaN	0	0	Median	12559000	12559000	0	2466	101	2312	5198	11347;11348	11347	73;74	2	9606
NMSVHLSPCFR	0	1	Oxidation (M)	1362.6173	0.61727494	376	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	5	0					1	16.284	16.284	3	0.00096196	8625	DP1063-5	89.9	70.242			2.7109	2.0246	NaN	1	0	Median	72262000	19870000	52392000	2467	376	2313	5199	11349;11350;11351;11352	11350	469	4	9606
NMSVIAHVDHGK	1	0	Oxidation (M)	1322.6401	0.64011887	165	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	2	0		1				13.066	13.066	3	0.0002097	2972	DP1063-2	107.97	107.97			2.6923	2.2524	NaN	1	0	Median	34000000	8062800	25937000	2468	165	2314	5200	11353;11354;11355;11356	11354	209	4	9606
NNASTDYDLSDK	1	0	Unmodified	1341.5685	0.56845329	266	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2.5	1.5	1			1		15.559	15.559	2	0.00047711	5230	DP1063-1	136.96	112.18			1.8314	1.3628	23.543	2	0	Median	15562000	5486700	10075000	2469	266	2315	5201;5202	11357;11358;11359;11360;11361;11362;11363;11364	11360		8	9606
NNLAGAEELFAR	0	1	Unmodified	1303.6521	0.65206377	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2	0		1				20.13	20.13	2	0.027382	12308	DP1063-2	80.763	51.805			NaN	NaN	NaN	0	0	Median	5285700	0	5285700	2470	428	2316	5203	11365	11365		1	9606
NNNQQLAQLQK	1	0	Unmodified	1297.6739	0.67386184	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				15.194	15.194	2	1.2637E-07	5622	DP1063-2	175.38	138.62			1.3477	1.1275	NaN	1	0	Median	16357000	6800100	9557100	2471	666	2317	5204	11366;11367;11368;11369	11367		4	9606
NNRPSEGPLQTR	0	2	Unmodified	1367.6906	0.69057454	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	1	0	1					13.677	13.677	3	0.00024043	3019	DP1063-1	127.56	93.38			1.3592	1.2493	NaN	1	0	Median	5114200	2228600	2885600	2472	428	2318	5205	11370;11371;11372;11373;11374	11371		5	9606
NNSELLNNLGNFINR	0	1	Unmodified	1730.87	0.86999547	341	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				22.263	22.263	2	0.000106	15123	DP1063-2	175.49	129.58			NaN	NaN	NaN	0	0	Median	5722900	0	5722900	2473	341	2319	5206	11375;11376	11375		2	9606
NNTQVLINCR	0	1	Unmodified	1230.6139	0.61390412	379	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	15.887	15.887	2	1.4289E-05	8186	DP1063-5	138.1	110.36			1.5232	1.1376	NaN	1	0	Median	9734100	3290500	6443600	2474	379	2320	5207	11377;11378	11378		2	9606
NNVAIAVTYNHDGSYSMQIEDK	1	0	Oxidation (M)	2484.1227	0.12271727	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.83	0.687		2	3	1		17.652	17.652	2;3	4.9609E-21	8932	DP1063-2	200.77	182.38			1.5466	1.1769	20.3	4	0	Median	170560000	63982000	106580000	2475	595	2321	5208;5209;5210;5211;5212;5213	11379;11380;11381;11382;11383;11384;11385;11386;11387;11388;11389;11390;11391;11392;11393;11394;11395;11396;11397	11384	718	19	9606
NNYRNAHSATTWSGQYVGGAEAR	0	2	Unmodified	2509.1483	0.14829559	32	CON__Streptavidin			yes	yes	0	0	1	5	0					2	15.79	15.79	3;4	1.4168E-05	8029	DP1063-5	138.77	117.17		+	NaN	NaN	NaN	0	0	Median	17527000	17527000	0	2476	32	2322	5214;5215	11398;11399;11400;11401	11398		4	
NPDDITNEEYGEFYK	1	0	Unmodified	1832.7741	0.77408897	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0.816		1	1	1		19.531	19.531	2	2.5304E-118	11479	DP1063-2	321.03	321.03			2.3522	1.928	13.275	2	0	Median	111410000	32501000	78907000	2477	132	2323	5216;5217;5218	11402;11403;11404;11405;11406;11407;11408;11409;11410;11411	11405		10	9606
NPDDITQEEYGEFYK	1	0	Unmodified	1846.7897	0.78973904	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	3	0.816		1	1	1		19.674	19.674	2	6.350399999999999E-52	11674	DP1063-2	266.74	266.74			2.4284	2.0316	NaN	1	0	Median	128070000	35771000	92303000	2478	135	2324	5219;5220;5221	11412;11413;11414;11415;11416;11417	11414		6	9606
NPDLCDFTIDHQSCSR	0	1	Unmodified	1963.8153	0.81525906	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		18.177	18.177	3	0.0017162	10741	DP1063-4	100.68	76.456			NaN	NaN	NaN	0	0	Median	6132100	0	6132100	2479	458	2325	5222	11418	11418		1	9606
NPEPELLVR	0	1	Unmodified	1065.5819	0.58185894	491	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	2	0		1				18.057	18.057	2	0.0059078	9438	DP1063-2	104.44	86.451			2.0521	1.4949	NaN	1	0	Median	12253000	3919200	8333900	2480	491	2326	5223	11419	11419		1	9606
NPQNSSQSADGLR	0	1	Unmodified	1372.6331	0.63311924	430	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	yes	0	0	0	3	0			1			13.631	13.631	2	0.023441	5049	DP1063-3	80.17	48.136			NaN	NaN	NaN	0	0	Median	0	0	0	2481	430	2327	5224	11420	11420		1	9606
NPSNCYGEESNAVCEK	1	0	Unmodified	1856.7305	0.73052637	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	1.5	0.5	1	1				15.227	15.227	2	7.0398E-35	4800	DP1063-1	255.16	248.92		+	NaN	NaN	NaN	0	0	Median	3856100	3856100	0	2482	8	2328	5225;5226	11421;11422;11423	11422		3	
NPVWYQALTHGLNEEQR	0	1	Unmodified	2053.997	0.99698689	84	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				20.937	20.937	3	0.00067095	13400	DP1063-2	144.29	112.14			NaN	NaN	NaN	0	0	Median	7461400	0	7461400	2483	84	2329	5227	11424;11425	11424		2	9606
NQCTQVVQER	0	1	Unmodified	1260.5881	0.5880833	173	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	0	1					13.958	13.958	2	0.0026998	3386	DP1063-1	112.11	64.45			NaN	NaN	NaN	0	0	Median	1198300	0	1198300	2484	173	2330	5228	11426	11426		1	9606
NQGGGLSSSGAGEGQGPK	1	0	Unmodified	1586.7285	0.72847619	131	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	0	1					13.71	13.71	2	7.6655E-05	3092	DP1063-1	153.81	92.898			1.6341	1.421	NaN	1	0	Median	1698700	592810	1105900	2485	131	2331	5229	11427;11428;11429;11430	11428		4	9606
NQGGYGGSSSSSSYGSGR	0	1	Unmodified	1693.6928	0.69281896	141	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	3.67	0.471			1	2		13.908	13.908	2	2.3915E-16	5151	DP1063-4	197.38	193.08			2.8851	1.9691	NaN	1	0	Median	22496000	5747000	16749000	2486	141	2332	5230;5231;5232	11431;11432;11433;11434;11435;11436;11437;11438	11434		8	9606
NQIQDQEQLVSK	1	0	Unmodified	1428.7209	0.72087161	308	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	1	0	1					17.845	17.845	2	0.022625	7696	DP1063-1	70.399	25.535			1.6585	1.2784	NaN	1	0	Median	5519100	2148100	3371000	2487	308	2333	5233	11439	11439		1	9606
NQQITHANNTVSNFK	1	0	Unmodified	1714.8387	0.83869534	566	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	2	0		1				14.769	14.769	3	0.0090758	5085	DP1063-2	81.703	37.698			NaN	NaN	NaN	0	0	Median	6583600	0	6583600	2488	566	2334	5234	11440;11441	11441		2	9606
NQSDADLEALR	0	1	Unmodified	1230.584	0.58404378	475	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	2	0		1				17.268	17.268	2	0.011439	8381	DP1063-2	87.913	48.609			NaN	NaN	NaN	0	0	Median	13667000	0	13667000	2489	475	2335	5235	11442	11442		1	9606
NQTAEKEEFEHQQK	2	0	Unmodified	1744.8016	0.80164113	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			12.783	12.783	3	2.6464E-06	4019	DP1063-3	175.21	175.21			3.3366	2.9937	NaN	1	0	Median	20673000	4637100	16036000	2490	153	2336	5236	11443;11444;11445;11446	11443		4	9606
NQTAEKEEFEHQQKELEK	3	0	Unmodified	2244.0659	0.065854319	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	2	3	0			2			14.535	14.535	3;4	0.0030924	6219	DP1063-3	102.39	69.464			NaN	NaN	NaN	0	0	Median	12091000	0	12091000	2491	153	2337	5237;5238	11447;11448	11448		2	9606
NQVALNPQNTVFDAK	1	0	Unmodified	1657.8424	0.84238373	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	4	0.816			1	1	1	18.691	18.691	2	1.3677E-13	11768	DP1063-3	196.27	152.85			2.9758	2.3895	NaN	1	0	Median	337330000	79098000	258230000	2492	149	2338	5239;5240;5241	11449;11450;11451;11452;11453;11454;11455;11456	11450		8	9606
NQVALNPQNTVFDAKR	1	1	Unmodified	1813.9435	0.94349476	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			17.489	17.489	3	0.00025424	10245	DP1063-3	119.65	64.79			NaN	NaN	NaN	0	0	Median	30135000	0	30135000	2493	149	2339	5242	11457;11458	11458		2	9606
NQVAMNPTNTVFDAK	1	0	Oxidation (M)	1664.7828	0.78281994	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3.5	0.5			1	1		17.234	17.234	2	3.117E-29	9767	DP1063-3	228.83	208.05			2.1579	1.6088	61.079	2	0	Median	102120000	25407000	76712000	2494	153	2340	5243;5244	11459;11460;11461;11462;11463;11464	11459	169	6	9606
NQVAMNPTNTVFDAK	1	0	Unmodified	1648.7879	0.78790532	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			18.452	18.452	2	0.00086714	11560	DP1063-3	147.24	105.03			NaN	NaN	NaN	0	0	Median	24330000	0	24330000	2495	153	2340	5245	11465	11465		1	9606
NQVGDENWR	0	1	Unmodified	1116.4948	0.49483484	572	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	2	0		1				15.702	15.702	2	0.0080436	6274	DP1063-2	100.02	81.693			NaN	NaN	NaN	0	0	Median	4513200	0	4513200	2496	572	2341	5246	11466;11467	11466		2	9606
NQVLVFVHSR	0	1	Unmodified	1197.6618	0.66184059	76	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.293	17.293	2	0.0016129	7039	DP1063-1	119.75	90.371			NaN	NaN	NaN	0	0	Median	2131400	0	2131400	2497	76	2342	5247	11468	11468		1	9606
NQYDNDVTVWSPQGR	0	1	Unmodified	1777.802	0.80197548	208	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	4	0				1		19.043	19.043	2	0.00254	11955	DP1063-4	109.84	76.084			NaN	NaN	NaN	0	0	Median	2709000	0	2709000	2498	208	2343	5248	11469	11469		1	9606
NRAEFMCHMKPSER	1	2	Oxidation (M)	1807.7916	0.79162726	625	Q9HCE0	EPG5	Ectopic P granules protein 5 homolog	yes	yes	0	1	2	2	0		1				20.584	20.584	2	0.034447	12996	DP1063-2	42.083	26.194			3.2312	3.6661	NaN	1	0	Median	27468000	6686300	20781000	2499	625	2344	5249	11470	11470	756	1	9606
NREPVQLETLSIR	0	2	Unmodified	1553.8526	0.85255449	378	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	1	5	0					2	18.062	18.062	2;3	0.00061008	10846	DP1063-5	136.38	79.829			NaN	NaN	NaN	0	0	Median	14845000	0	14845000	2500	378	2345	5250;5251	11471;11472;11473;11474	11471		4	9606
NSEPAGLETPEAK	1	0	Unmodified	1341.6412	0.64122431	131	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	0	1					15.562	15.562	2	0.027425	5159	DP1063-1	80.979	40.912			NaN	NaN	NaN	0	0	Median	1362100	0	1362100	2501	131	2346	5252	11475;11476	11475		2	9606
NSFMVIPK	1	0	Oxidation (M)	950.48954	0.48953845	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	0	2	0		1				17.273	17.273	2	0.034892	8379	DP1063-2	93.195	61.892			NaN	NaN	NaN	0	0	Median	201020000	0	201020000	2502	524	2347	5253	11477	11477	663	1	9606
NSFMVIPK	1	0	Unmodified	934.49462	0.49462383	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2	0		2				18.763	18.763	1;2	0.030422	10372	DP1063-2	116.9	70.533			NaN	NaN	NaN	0	0	Median	71832000	0	71832000	2503	524	2347	5254;5255	11478;11479;11480	11478		3	9606
NSHAPPAETIR	0	1	Unmodified	1191.5996	0.59963426	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	2	0		1				13.169	13.169	3	0.014063	3109	DP1063-2	74.78	47.451			NaN	NaN	NaN	0	0	Median	2162300	0	2162300	2504	547	2348	5256	11481	11481		1	9606
NSKIEISELNR	1	1	Unmodified	1301.6939	0.69392858	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3	0			1			16.055	16.055	3	0.0047993	8261	DP1063-3	91.123	39.512		+	NaN	NaN	NaN	0	0	Median	7615900	7615900	0	2505	101	2349	5257	11482	11482		1	9606
NSLESYAFNMK	1	0	Oxidation (M)	1318.5864	0.58635197	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			18.242	18.242	2	9.5159E-06	11209	DP1063-3	137.05	115.6			2.887	2.3182	NaN	1	0	Median	63305000	15920000	47385000	2506	153	2350	5258	11483;11484;11485;11486	11483	170	4	9606
NSLESYAFNMK	1	0	Unmodified	1302.5914	0.59143734	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.716	19.716	2	0.001263	13249	DP1063-3	126.31	88.037			NaN	NaN	NaN	0	0	Median	21243000	0	21243000	2507	153	2350	5259	11487;11488	11488		2	9606
NSLVDKPFAAK	2	0	Unmodified	1188.6503	0.65027285	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	1	4	0				1		15.801	15.801	2	0.0083331	7659	DP1063-4	85.533	57.135			0.96438	1.0015	NaN	1	0	Median	5765200	2763900	3001400	2508	485	2351	5260	11489;11490;11491	11490		3	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	3 Oxidation (M)	3133.3315	0.33146577	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	3	0	2.5	0.5		1	1			18.023	18.023	3	1.6129E-13	9382	DP1063-2	145.77	145.77			1.2181	0.9984	2.5995	2	0	Median	112070000	52114000	59960000	2509	595	2352	5261;5262	11492;11493;11494;11495;11496;11497;11498;11499;11500;11501;11502;11503	11492	719;720;721	12	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	2 Oxidation (M)	3117.3366	0.33655115	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2.33	0.471		2	1			18.761	18.761	3	4.2603E-14	10119	DP1063-2	156.9	151.55			1.1745	0.98263	14.001	3	0	Median	106760000	47370000	59390000	2510	595	2352	5263;5264;5265	11504;11505;11506;11507;11508;11509;11510;11511;11512;11513;11514;11515;11516;11517	11504	719;720;721	14	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	1	0	Oxidation (M)	3101.3416	0.34163653	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			19.466	19.466	3	0.03642	12973	DP1063-3	50.234	30.984			NaN	NaN	NaN	0	0	Median	5198000	0	5198000	2511	595	2352	5266	11518	11518	719;720;721	1	9606
NSNPALNDNLEK	1	0	Unmodified	1327.6368	0.63680763	37	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	4	0				1		15.598	15.598	2	0.0048643	7350	DP1063-4	98.943	40.983			NaN	NaN	NaN	0	0	Median	5158400	0	5158400	2512	37	2353	5267	11519;11520	11519		2	9606
NSRPEANEALER	0	2	Unmodified	1384.6695	0.66950474	682	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	1	5	0					1	13.544	13.544	3	0.001277	5345	DP1063-5	111.31	80.744			NaN	NaN	NaN	0	0	Median	6866500	0	6866500	2513	682	2354	5268	11521;11522	11522		2	9606
NSSYFVEWIPNNVK	1	0	Unmodified	1695.8257	0.82567103	414;129;480;471	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	4	0.816			1	1	1	21.919	21.919	2	1.7497999999999998E-28	16181	DP1063-3	230.95	207.81			2.1273	1.5633	9.5324	3	0	Plateau	197380000	65457000	131920000	2514	129;414;480;471	2355	5269;5270;5271	11523;11524;11525;11526;11527;11528;11529;11530;11531;11532	11526		10	9606
NSVSNFLHSLER	0	1	Unmodified	1401.7001	0.70007659	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.4	0.663	7	2	1			21.704	21.704	2;3	2.6167E-38	11043	DP1063-1	248.05	204.75			1.3743	1.2587	11.519	4	0	Median	867310000	361370000	505930000	2515	460	2356	5272;5273;5274;5275;5276;5277;5278;5279;5280;5281	11533;11534;11535;11536;11537;11538;11539;11540;11541;11542;11543;11544;11545;11546;11547;11548;11549;11550;11551;11552;11553;11554	11539		22	9606
NSVTGGTAAFEPSVDYCVVK	1	0	Unmodified	2099.9834	0.98337024	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	2					19.831	19.831	2	1.4323E-07	10133	DP1063-1	171.76	156.33			1.9271	1.4868	NaN	1	0	Median	6017000	2260700	3756300	2516	222	2357	5282;5283	11555;11556;11557	11555		3	9606
NSYLEVLLK	1	0	Unmodified	1077.607	0.60701105	502	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	4	0				1		21.558	21.558	2	0.027911	15250	DP1063-4	75.043	32.756			1.6568	1.1468	NaN	1	0	Median	2744400	1075200	1669200	2517	502	2358	5284	11558;11559	11559		2	9606
NTDEMVELR	0	1	Oxidation (M)	1121.5023	0.50228798	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	3	0			1			15.268	15.268	2	0.0033075	7182	DP1063-3	104.01	68.395			3.2562	2.3371	NaN	1	0	Median	15582000	4087900	11495000	2518	362	2359	5285	11560;11561	11560	458	2	9606
NTGIICTIGPASR	0	1	Unmodified	1358.6976	0.69763375	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			1			17.927	17.927	2	3.05E-08	10741	DP1063-3	181.31	154.34			2.6658	2.0632	NaN	1	0	Median	49344000	15167000	34178000	2519	168	2360	5286	11562;11563;11564;11565	11562		4	9606
NTLLIAGLQAR	0	1	Unmodified	1168.6928	0.69280637	267	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	4	0				1		19.816	19.816	2	0.0024775	12967	DP1063-4	104.01	79.983			2.4114	1.5887	NaN	1	0	Median	5737600	1507000	4230600	2520	267	2361	5287	11566;11567	11566		2	9606
NVCTEAGMFAIR	0	1	Oxidation (M)	1383.6275	0.62750527	381	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	1	0	4	0				1		18.481	18.481	2	0.024164	11171	DP1063-4	84.213	56.004			NaN	NaN	NaN	0	0	Median	4003400	0	4003400	2521	381	2362	5288	11568	11568	472	1	9606
NVESTNSNAYTQR	0	1	Unmodified	1482.6699	0.66989867	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	2.67	0.943		2		1		14.212	14.212	2	1.6765E-05	4402	DP1063-2	149.96	104.8			NaN	NaN	NaN	0	0	Median	0	0	0	2522	547	2363	5289;5290;5291	11569;11570;11571	11569		3	9606
NVFLLGFIPAK	1	0	Unmodified	1217.7172	0.7172302	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				23.748	23.748	2	0.0042243	16946	DP1063-2	101.64	67.555			NaN	NaN	NaN	0	0	Median	7316800	0	7316800	2523	569	2364	5292	11572;11573	11573		2	9606
NVFNALIR	0	1	Unmodified	945.5396	0.53960019	440	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		20.274	20.274	2	0.048543	13551	DP1063-4	82.305	41.078			NaN	NaN	NaN	0	0	Median	6219800	0	6219800	2524	440	2365	5293	11574	11574		1	9606
NVICDKCEGR	1	1	Unmodified	1249.5543	0.55434033	236	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	1	4	0				1		13.172	13.172	3	0.0047039	4365	DP1063-4	96.342	82.084			NaN	NaN	NaN	0	0	Median	1924300	0	1924300	2525	236	2366	5294	11575	11575		1	9606
NVIQSVLQAIR	0	1	Unmodified	1239.7299	0.72992016	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				23.829	23.829	2	1.5916E-05	17062	DP1063-2	138.4	96.205			1.042	0.75718	NaN	1	0	Median	14028000	5653000	8375200	2526	543	2367	5295	11576;11577;11578	11577		3	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	2	1	Unmodified	3141.4195	0.41950423	284	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				13.296	13.296	5	0.03216	3248	DP1063-2	47.73	35.297			NaN	NaN	NaN	0	0	Median	10260000	0	10260000	2527	284	2368	5296	11579	11579		1	9606
NVLCSACSGQGGK	1	0	Unmodified	1336.5864	0.58636874	67	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	4	0				1		14.524	14.524	2	0.00067448	5995	DP1063-4	125.75	78.144			NaN	NaN	NaN	0	0	Median	3427900	0	3427900	2528	67	2369	5297	11580;11581	11581		2	9606
NVLISVLQAIR	0	1	Unmodified	1224.7554	0.75540662	581	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	2	0		1				24.07	24.07	2	0.011601	17382	DP1063-2	82.287	62.5			1.1218	0.85301	NaN	1	0	Median	6472300	2929600	3542700	2529	581	2370	5298	11582	11582		1	9606
NVLLDPQLVPGGGASEMAVAHALTEK	1	0	Unmodified	2616.3581	0.35813694	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			22.289	22.289	3	4.5412E-11	16676	DP1063-3	103.63	103.63			1.6528	1.3272	NaN	1	0	Median	11564000	3803500	7760100	2530	304	2371	5299	11583;11584	11584		2	9606
NVLLDPQLVPGGGASEMAVAHALTEK	1	0	Oxidation (M)	2632.3531	0.35305156	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			21.701	21.701	3	0.0001539	15963	DP1063-3	92.463	57.644			NaN	NaN	NaN	0	0	Median	30852000	0	30852000	2531	304	2371	5300	11585;11586	11585	372	2	9606
NVMGFNTDRLAWTR	0	2	Acetyl (Protein N-term);Oxidation (M)	1737.8257	0.82568781	147	P0DJD0	RGPD1	RANBP2-like and GRIP domain-containing protein 1	yes	yes	1	1	1	4	0				1		20.777	20.777	3	0.036018	14213	DP1063-4	50.467	23.578			NaN	NaN	NaN	0	0	Median	23778000	0	23778000	2532	147	2372	5301	11587	11587	154	1	9606
NVPVITGSK	1	0	Unmodified	913.52328	0.52328142	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		15.362	15.362	2	0.038098	7086	DP1063-4	68.016	23.621			1.7163	1.188	NaN	1	0	Median	9575100	3732500	5842600	2533	249	2373	5302	11588	11588		1	9606
NVQDAIADAEQR	0	1	Unmodified	1328.6321	0.6320566	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			1			17.783	17.783	2	0.0027988	10674	DP1063-3	108.9	72.456		+	NaN	NaN	NaN	0	0	Median	29852000	29852000	0	2534	22	2374	5303	11589;11590	11589		2	9606
NVQILNMVTR	0	1	Oxidation (M)	1202.6441	0.64414162	48	O14925	TIMM23	Mitochondrial import inner membrane translocase subunit Tim23	yes	yes	0	1	0	5	0					1	17.76	17.76	2	0.0047727	10529	DP1063-5	87.308	69.795			1.056	0.78868	NaN	1	0	Median	8435500	4724500	3711000	2535	48	2375	5304	11591;11592	11592	41	2	9606
NVQLQENEIR	0	1	Unmodified	1241.6364	0.6364137	260	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3.29	1.16	1		3	2	1	16.485	16.485	2	2.532E-12	8537	DP1063-5	186.76	107.99			100.34	91.815	NaN	1	0	Median	894000000	2216800	891780000	2536	260	2376	5305;5306;5307;5308;5309;5310;5311	11593;11594;11595;11596;11597;11598;11599;11600;11601;11602;11603	11603		11	9606
NVQLTENEIR	0	1	Unmodified	1214.6255	0.62551466	365	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4.33	0.471				2	1	16.601	16.601	2	2.49E-14	8590	DP1063-4	201.07	129.46			33.585	30.397	NaN	1	0	Median	203530000	5232700	198300000	2537	365	2377	5312;5313;5314	11604;11605;11606;11607;11608;11609;11610	11605		7	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	2 Oxidation (M)	2903.3753	0.37531992	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	2	0	2.5	1.12	2	2	2	2		22.152	22.152	2;3	3.7892E-13	12966	DP1063-1	184.92	165.62		+	NaN	NaN	NaN	0	0	Median	133870000	133870000	0	2538	19	2378	5315;5316;5317;5318;5319;5320;5321;5322	11611;11612;11613;11614;11615;11616;11617;11618;11619;11620;11621;11622;11623;11624;11625;11626	11613	21;22	16	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	0	1	Oxidation (M)	2887.3804	0.3804053	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	3	0			1			23.93	23.93	2	2.1351E-07	18745	DP1063-3	137.14	106.24		+	NaN	NaN	NaN	0	0	Median	3250800	3250800	0	2539	19	2378	5323	11627;11628;11629	11627	21;22	3	9606
NVTELNEPLSNEER	0	1	Unmodified	1642.7798	0.77984305	363	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	5	0					1	17.363	17.363	2	3.2553E-11	9922	DP1063-5	204.48	112.93			NaN	NaN	NaN	0	0	Median	5231400	0	5231400	2540	363	2379	5324	11630;11631;11632	11630		3	9606
NVTLCGHLHHGK	1	0	Unmodified	1371.683	0.68298674	499	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				12.915	12.915	3	0.012449	2806	DP1063-2	76.927	42.159			NaN	NaN	NaN	0	0	Median	3441200	0	3441200	2541	499	2380	5325	11633;11634	11634		2	9606
NVVHQLSVTLEDLYNGATR	0	1	Unmodified	2128.0913	0.091281208	236	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				1		23.588	23.588	3	5.1961E-05	17604	DP1063-4	123.54	123.54			2.2882	1.5712	NaN	1	0	Median	4616900	1749000	2867900	2542	236	2381	5326	11635;11636	11635		2	9606
NVVTIFSAPNYCYR	0	1	Unmodified	1702.8137	0.81372614	384	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	yes	no	0	0	0	4	0				1		21.032	21.032	2	0.003779	14562	DP1063-4	100.88	59.479			NaN	NaN	NaN	0	0	Median	5224100	0	5224100	2543	384	2382	5327	11637	11637		1	9606
NYILDQTNVYGSAQR	0	1	Unmodified	1740.8431	0.84311201	609	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				19.006	19.006	2	0.001703	10759	DP1063-2	114.82	67.531			NaN	NaN	NaN	0	0	Median	5943300	0	5943300	2544	609	2383	5328	11638	11638		1	9606
NYISAWELQR	0	1	Unmodified	1278.6357	0.63568542	610	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	4	0				1		20.167	20.167	2	0.050115	13422	DP1063-4	76.827	42.574			NaN	NaN	NaN	0	0	Median	0	0	0	2545	610	2384	5329	11639	11639		1	9606
NYMSNPSYNYEIVNR	0	1	Oxidation (M)	1878.8207	0.82066201	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	1	0	2					17.969	17.969	2	9.3486E-06	7818	DP1063-1	157.03	117.24			NaN	NaN	NaN	0	0	Median	0	0	0	2546	487	2385	5330;5331	11640;11641	11640	620	2	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	1	1	Unmodified	3256.3889	0.38893238	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				2		14.503	14.503	3	2.2429E-22	5861	DP1063-4	189.52	188.13			1.8725	1.8205	NaN	1	0	Median	21842000	6582700	15259000	2547	410	2386	5332;5333	11642;11643;11644;11645;11646;11647;11648;11649;11650;11651	11648		10	9606
NYSPYYNTIDDLKDQIVDLTVGNNK	2	0	Unmodified	2901.4032	0.40323245	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			24.085	24.085	3	0.00010404	18979	DP1063-3	108.64	86.799		+	NaN	NaN	NaN	0	0	Median	13843000	13843000	0	2548	251	2387	5334	11652;11653	11652		2	9606
NYTDEAIETDDLTIK	1	0	Unmodified	1739.8101	0.81014013	47	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	5	0					1	19.556	19.556	2	0.0099739	12841	DP1063-5	91.961	59.632			NaN	NaN	NaN	0	0	Median	4649100	0	4649100	2549	47	2388	5335	11654;11655	11655		2	9606
NYYEQWGK	1	0	Unmodified	1086.4771	0.47705951	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.485	17.485	2	0.012493	9796	DP1063-4	107.59	91.45			2.5048	1.7337	NaN	1	0	Median	11217000	3135700	8081000	2550	197	2389	5336	11656;11657	11657		2	9606
PAGPVQAVPPPPPVPTEPK	1	0	Unmodified	1874.0302	0.030184501	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				18.301	18.301	2	5.5691E-05	9721	DP1063-2	152.99	143.2			0.54633	0.45707	NaN	1	0	Median	21292000	12044000	9247400	2551	513	2390	5337	11658;11659;11660;11661	11659		4	9606
PGASLPPLDLQALEK	1	0	Unmodified	1547.8559	0.85590853	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.26	1	1		3		21.633	21.633	2	0.0016606	15281	DP1063-4	112.44	37.476			1.0119	0.84657	NaN	1	0	Median	135740000	68680000	67057000	2552	154	2391	5338;5339;5340;5341;5342	11662;11663;11664;11665;11666;11667;11668;11669;11670	11669		9	9606
PGCVAELQPR	0	1	Unmodified	1125.5601	0.56007764	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	1		1		1		16.036	16.036	2	0.0033947	6790	DP1063-2	107.69	70.933			NaN	NaN	NaN	0	0	Median	71477000	0	71477000	2553	524	2392	5343;5344	11671;11672;11673	11671		3	9606
PIKPSPPYFGLLLASVGR	1	1	Unmodified	1911.0982	0.098204487	177	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	3	0			1			22.921	22.921	3	0.00013246	17515	DP1063-3	87.323	69.746			1.2898	1.1698	NaN	1	0	Median	6753200	3519100	3234100	2554	177	2393	5345	11674;11675	11675		2	9606
PLFPHVLCHNCAVEFNFGQK	1	0	Unmodified	2413.146	0.14597609	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				20.198	20.198	4	3.5687E-05	12382	DP1063-2	106.87	92.418			1.6201	1.3554	NaN	1	0	Median	25397000	8958600	16438000	2555	429	2394	5346	11676;11677	11676		2	9606
PLHPARPGCVAELQPR	0	2	Unmodified	1796.9468	0.946806	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.5	0.5		2	2			15.57	15.57	3;4	0.00037606	6011	DP1063-2	83.692	66.41			52.765	49.135	NaN	1	0	Median	269260000	3551700	265700000	2556	524	2395	5347;5348;5349;5350	11678;11679;11680;11681;11682;11683	11679		6	9606
PLISVYSEK	1	0	Unmodified	1034.5648	0.56481189	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				1		17.938	17.938	2	0.00080232	10390	DP1063-4	126.52	47.053			1.7462	1.2087	NaN	1	0	Median	15271000	5721000	9550200	2557	259	2396	5351	11684;11685;11686;11687	11685		4	9606
PLISVYSEKGESSGK	2	0	Unmodified	1579.8094	0.80935227	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				1		16.315	16.315	3	0.0015568	8337	DP1063-4	134.88	134.88			2.2655	2.3528	NaN	1	0	Median	11465000	4129100	7335900	2558	259	2397	5352	11688;11689	11689		2	9606
PLVLPSPLVTPGSNSQER	0	1	Unmodified	1890.0211	0.021076378	593	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				20.838	20.838	2	0.0018709	13351	DP1063-2	113.24	82.904			NaN	NaN	NaN	0	0	Median	7688900	0	7688900	2559	593	2398	5353	11690	11690		1	9606
PMFIVNTNVPR	0	1	Oxidation (M)	1302.6754	0.67544174	167	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	1	0	5	0					1	18.342	18.342	2	0.00020257	11221	DP1063-5	124.92	124.92			1.6138	1.2052	NaN	1	0	Median	37760000	12633000	25128000	2560	167	2399	5354	11691;11692;11693;11694	11692	212	4	9606
PMFIVNTNVPR	0	1	Acetyl (Protein N-term);Oxidation (M)	1344.686	0.68600643	167	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	1	1	0	5	0					1	19.294	19.294	2	0.0001531	12476	DP1063-5	113.71	93.945			1.9344	1.4447	NaN	1	0	Median	27555000	10289000	17265000	2561	167	2399	5355	11695;11696	11695	212	2	9606
PMFIVNTNVPR	0	1	Unmodified	1286.6805	0.68052712	167	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	5	0					1	19.553	19.553	2	0.0072319	12797	DP1063-5	90.629	90.629			1.6436	1.2275	NaN	1	0	Median	9051200	2676600	6374600	2562	167	2399	5356	11697;11698	11697		2	9606
PMFIVNTNVPR	0	1	Acetyl (Protein N-term)	1328.6911	0.69109181	167	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	1	0	0	5	0					1	21.442	21.442	2	0.040224	15195	DP1063-5	56.432	29.543			1.3319	0.99474	NaN	1	0	Median	5515100	2207500	3307600	2563	167	2399	5357	11699	11699		0	9606
PQNFQETGTILK	1	0	Unmodified	1374.7143	0.71432967	691				yes	yes	0	0	0	3	0			1			19.623	19.623	2	0.0028279	13101	DP1063-3	108.57	33.183	+		NaN	NaN	NaN	0	0	Median	37375000	37375000	0	2564	691	2400	5358	11700	11700		1	9606
PSSSPVIFAGGQDR	0	1	Unmodified	1416.6997	0.69974224	508	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				2		17.67	17.67	2	0.013056	10053	DP1063-4	86.911	36.803			NaN	NaN	NaN	0	0	Median	0	0	0	2565	508	2401	5359;5360	11701;11702	11702		2	9606
PVAPSGTALSTTSSK	1	0	Unmodified	1402.7304	0.73037367	256	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	0	1					15.305	15.305	2	0.043403	4904	DP1063-1	72.731	24.771			NaN	NaN	NaN	0	0	Median	0	0	0	2566	256	2402	5361	11703	11703		1	9606
PVDEMETDLKTTGR	1	1	Oxidation (M)	1606.7509	0.75085111	2	A6H8Y1	BDP1	Transcription factor TFIIIB component B'' homolog	yes	yes	0	1	1	5	0					1	17.195	17.195	2	0.034825	9691	DP1063-5	80.231	16.415			NaN	NaN	NaN	0	0	Median	25379000	0	25379000	2567	2	2403	5362	11704	11704	3	1	9606
PVIVEPLEQLDDEDGLPEK	1	0	Unmodified	2134.0681	0.06814573	199	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				21.893	21.893	2	3.8186E-06	14640	DP1063-2	161.21	161.21			1.8113	1.5153	NaN	1	0	Median	12320000	4144900	8174700	2568	199	2404	5363	11705	11705		1	9606
PVMETIPLGDLQAR	0	1	Oxidation (M)	1554.8076	0.80757813	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	0	2.33	0.471		2	1			19.579	19.579	2;3	6.3948E-11	11557	DP1063-2	201.75	117.88			NaN	NaN	NaN	0	0	Median	112040000	0	112040000	2569	524	2405	5364;5365;5366	11706;11707;11708;11709;11710;11711	11707	664	6	9606
PVMETIPLGDLQAR	0	1	Unmodified	1538.8127	0.81266351	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2	0		1				20.863	20.863	2	3.6017E-05	13250	DP1063-2	177.44	132.28			NaN	NaN	NaN	0	0	Median	36847000	0	36847000	2570	524	2405	5367	11712;11713	11712		2	9606
PVSSAASVYAGAGGSGSR	0	1	Unmodified	1579.759	0.75904803	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				2		15.883	15.883	2;3	5.6685000000000006E-33	7753	DP1063-4	287.29	254.24			2.4177	1.6044	9.1179	2	0	Median	38845000	13173000	25673000	2571	118	2406	5368;5369	11714;11715;11716;11717;11718	11715		5	9606
PYQYPALTPEQK	1	0	Unmodified	1433.7191	0.7190807	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		17.852	17.852	2	0.0016365	10298	DP1063-4	120.63	63.82			NaN	NaN	NaN	0	0	Median	4387500	0	4387500	2572	98	2407	5370	11719	11719		1	9606
QAAPCVLFFDELDSIAK	1	0	Unmodified	1922.9448	0.94479989	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				25.39	25.39	2	0.00050105	18951	DP1063-2	133.98	85.536			NaN	NaN	NaN	0	0	Median	2714500	0	2714500	2573	337	2408	5371	11720;11721	11720		2	9606
QAASGLVGQENAR	0	1	Unmodified	1299.6531	0.6531264	662	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			1			14.742	14.742	2	0.00075432	6467	DP1063-3	117.86	117.86			3.996	3.0009	NaN	1	0	Median	9323500	2699800	6623700	2574	662	2409	5372	11722;11723;11724	11722		3	9606
QAASSLQQASLK	1	0	Unmodified	1230.6568	0.65681479	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			15.27	15.27	2	0.00037201	7166	DP1063-3	147.3	147.3			1.8857	1.5142	NaN	1	0	Median	52408000	14960000	37448000	2575	263	2410	5373;5374	11725;11726;11727;11728;11729	11729		5	9606
QADLYISEGLHPR	0	1	Unmodified	1497.7576	0.75759147	268	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	yes	no	0	0	0	3	0			2			17.63	17.63	2;3	0.028144	10458	DP1063-3	76.843	12.74			3.05	2.2489	NaN	1	0	Median	26307000	5910600	20396000	2576	268	2411	5375;5376	11730;11731	11731		2	9606
QADVFPDRDHFGR	0	2	Unmodified	1558.7277	0.72768832	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		16.359	16.359	2;3	1.6603E-06	8583	DP1063-3	187.16	146.43			1.2704	1.1503	6.2293	2	0	Median	427280000	166210000	261080000	2577	624	2412	5377;5378;5379	11732;11733;11734;11735;11736;11737;11738	11736		7	9606
QAGAEALSQAVAR	0	1	Unmodified	1270.663	0.6629628	567	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					16.736	16.736	2	0.035942	6423	DP1063-1	78.342	44.169			NaN	NaN	NaN	0	0	Median	1506300	0	1506300	2578	567	2413	5380	11739	11739		1	9606
QAGVFEPTIVK	1	0	Unmodified	1187.655	0.65502388	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			18.395	18.395	2	0.039856	11486	DP1063-3	76.282	38.774			NaN	NaN	NaN	0	0	Median	13065000	0	13065000	2579	179	2414	5381	11740	11740		1	9606
QAHLTNQYMQR	0	1	Oxidation (M)	1404.6568	0.65683157	156	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	1	0	3	0			1			13.382	13.382	3	0.003413	4749	DP1063-3	88.596	66.603			NaN	NaN	NaN	0	0	Median	6056700	0	6056700	2580	156	2415	5382	11741	11741	195	1	9606
QAHTMDPQLR	0	1	Oxidation (M)	1211.5717	0.57170495	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	1	0	1					12.876	12.876	3	0.0088639	2179	DP1063-1	59.542	44.34			2.4835	2.1016	NaN	1	0	Median	2509700	723970	1785700	2581	303	2416	5383	11742;11743	11742	363	2	9606
QAITQVVVSR	0	1	Unmodified	1099.635	0.63495714	622	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		16.528	16.528	2	0.0007058	8565	DP1063-4	152.11	106.14			NaN	NaN	NaN	0	0	Median	7846300	0	7846300	2582	622	2417	5384	11744;11745	11744		2	9606
QAQEYEALLNIK	1	0	Unmodified	1418.7405	0.74054442	118	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	4	0				1		20.334	20.334	2	5.1943E-06	13685	DP1063-4	156.83	120.14			NaN	NaN	NaN	0	0	Median	10084000	0	10084000	2583	118	2418	5385	11746;11747;11748	11747		3	9606
QAQIEVVPSASALIIK	1	0	Unmodified	1665.9665	0.96652161	231	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	21.022	21.022	2	0.0016815	14689	DP1063-5	112.43	94.24			1.5777	1.3355	NaN	1	0	Median	9606300	3288600	6317700	2584	231	2419	5386	11749;11750	11750		2	9606
QAQQERDELADEIANSSGK	1	1	Unmodified	2087.972	0.97195393	252	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	0	1					17.216	17.216	3	0.0066835	6939	DP1063-1	88.283	59.184			NaN	NaN	NaN	0	0	Median	3744400	0	3744400	2585	252	2420	5387	11751;11752	11752		2	9606
QATDDIIKNMSFENQVK	2	0	Oxidation (M)	1995.9572	0.95715549	586	Q96LB3	IFT74	Intraflagellar transport protein 74 homolog	yes	yes	0	1	1	4	0				1		24.041	24.041	2	0.01599	18080	DP1063-4	91.202	32.691			NaN	NaN	NaN	0	0	Median	3236500	0	3236500	2586	586	2421	5388	11753	11753	705	1	9606
QAVTNPNNTFYATK	1	0	Unmodified	1567.7631	0.76307078	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			3			16.471	16.471	2	2.9606E-06	8808	DP1063-3	153.74	121.9			NaN	NaN	NaN	0	0	Median	24558000	0	24558000	2587	263	2422	5389;5390;5391	11754;11755;11756;11757	11756		4	9606
QCVSAATSTNDSFEIRPAPK	1	1	Unmodified	2178.0375	0.037531078	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2	0		2				16.715	16.715	2;3	3.4216E-48	7631	DP1063-2	269.88	229.87			NaN	NaN	NaN	0	0	Median	69197000	0	69197000	2588	524	2423	5392;5393	11758;11759;11760;11761	11761		4	9606
QCVSAATSTNDSFEIRPAPKPVMETIPLGDLQAR	1	2	Oxidation (M)	3714.8345	0.83454452	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	2	2	0		1				19.456	19.456	3	9.1597E-10	11427	DP1063-2	90.211	73.066			NaN	NaN	NaN	0	0	Median	14906000	0	14906000	2589	524	2424	5394	11762;11763	11763	664	2	9606
QDAQVVLYR	0	1	Unmodified	1090.5771	0.57710791	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.121	17.121	2	0.0057615	6797	DP1063-1	102.51	44.924			NaN	NaN	NaN	0	0	Median	2510400	0	2510400	2590	420	2425	5395	11764;11765	11765		2	9606
QDGQFSVLFTK	1	0	Unmodified	1268.6401	0.6401021	18	CON__P12763			yes	yes	0	0	0	3.5	0.5			1	1		20.523	20.523	2	8.3907E-08	14367	DP1063-3	185.33	123.22		+	NaN	NaN	NaN	0	0	Median	52183000	52183000	0	2591	18	2426	5396;5397	11766;11767;11768;11769	11767		4	9606
QDIAFAYQR	0	1	Unmodified	1110.5458	0.54580778	128	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	4	0				1		17.848	17.848	2	0.001915	10256	DP1063-4	120.46	79.463			1.5058	0.93379	NaN	1	0	Median	7887600	3224100	4663500	2592	128	2427	5398	11770;11771	11770		2	9606
QDLMNIAGTTLSSK	1	0	Oxidation (M)	1493.7396	0.73955814	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	3	0			1			18.085	18.085	2	0.0041537	11086	DP1063-3	105.65	53.159			NaN	NaN	NaN	0	0	Median	7592700	0	7592700	2593	419	2428	5399	11772	11772	522	1	9606
QEGIIFIGPPPSAIR	0	1	Unmodified	1593.8879	0.88787736	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	1.26		2	1	1	2	21.513	21.513	2;3	5.8707E-82	14085	DP1063-2	299.42	299.42			1.0931	0.8195	8.3601	3	0	Median	296760000	136930000	159840000	2594	595	2429	5400;5401;5402;5403;5404;5405	11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786;11787	11775		15	9606
QEIFQEQLAAVPEFR	0	1	Unmodified	1803.9155	0.91554867	681	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	2	0		1				21.979	21.979	2	0.00078767	14728	DP1063-2	133.32	80.629			NaN	NaN	NaN	0	0	Median	0	0	0	2595	681	2430	5406	11788	11788		1	9606
QELSHALYQHDAACR	0	1	Unmodified	1797.8217	0.82166506	655	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	3	0			1			14.917	14.917	3	0.00071448	6680	DP1063-3	113.54	94.707			3.2878	2.3565	NaN	1	0	Median	15827000	3608400	12218000	2596	655	2431	5407	11789;11790	11789		2	9606
QEMQEVQSSR	0	1	Unmodified	1220.5455	0.54554978	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		13.649	13.649	2	0.0073319	4829	DP1063-4	90.15	72.286			2.5903	1.7575	NaN	1	0	Median	4916000	1328000	3588000	2597	197	2432	5408	11791	11791		1	9606
QEPERNECFLSHKDDSPDLPK	2	1	Unmodified	2540.1602	0.16016541	14	CON__P02769			yes	yes	0	0	2	2.2	0.748	1	2	2			15.886	15.886	2;3;4	0.00014231	6553	DP1063-2	117.29	93.567		+	NaN	NaN	NaN	0	0	Median	515870000	515870000	0	2598	14	2433	5409;5410;5411;5412;5413	11792;11793;11794;11795;11796;11797;11798;11799;11800	11798		9	9606
QESYLGPTLFLLGGNSQFVHPSHHPEIMR	0	1	Unmodified	3290.6295	0.62950119	556	Q8NFV4	ABHD11	Alpha/beta hydrolase domain-containing protein 11	yes	yes	0	0	0	5	0					1	21.422	21.422	4	0.018513	15197	DP1063-5	17.527	17.527			1.0854	0.81063	NaN	1	0	Median	7889800	4732700	3157100	2599	556	2434	5414	11801	11801		0	9606
QEYDESGPSIVHR	0	1	Unmodified	1515.6954	0.69538514	349;409	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		15.543	15.543	3	0.00012364	7254	DP1063-4	113.07	113.07			2.7464	2.4138	NaN	1	0	Median	149370000	31127000	118240000	2600	349;409	2435	5415	11802;11803;11804;11805	11803		4	9606
QEYEQLIAK	1	0	Unmodified	1120.5764	0.57643921	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0			1			17.179	17.179	2	0.0049763	9809	DP1063-3	176.09	96.636		+	NaN	NaN	NaN	0	0	Median	33465000	33465000	0	2601	251	2436	5416	11806;11807	11807		2	9606
QFEEIWER	0	1	Unmodified	1135.5298	0.52982336	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				19.718	19.718	2	0.025427	11777	DP1063-2	92.47	55.311			NaN	NaN	NaN	0	0	Median	13017000	0	13017000	2602	654	2437	5417	11808	11808		1	9606
QFLTQLMQK	1	0	Oxidation (M)	1151.6009	0.60087982	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				18.105	18.105	2	0.014167	9466	DP1063-2	76.478	43.868			1.4571	1.219	NaN	1	0	Median	12290000	5250900	7039500	2603	513	2438	5418	11809	11809	655	1	9606
QFSSADEAALKEPIIK	2	0	Unmodified	1745.92	0.91996535	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		18.024	18.024	2;3	4.4921999999999997E-32	10902	DP1063-3	261.38	261.38			1.3525	1.2135	2.2906	3	0	Plateau	416360000	168510000	247850000	2604	624	2439	5419;5420;5421	11810;11811;11812;11813;11814;11815;11816;11817;11818;11819;11820	11816		11	9606
QFSSADEAALKEPIIKK	3	0	Unmodified	1874.0149	0.014928368	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	2	3	0			1			16.71	16.71	4	0.017437	9100	DP1063-3	55.097	45.175			1.217	1.3109	NaN	1	0	Median	23111000	9189800	13921000	2605	624	2440	5422	11821	11821		1	9606
QFYINVER	0	1	Unmodified	1067.54	0.53999412	350	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	no	0	0	0	4	0				1		18.535	18.535	2	0.045058	11255	DP1063-4	83.265	36.198			NaN	NaN	NaN	0	0	Median	4002900	0	4002900	2606	350	2441	5423	11822	11822		1	9606
QGDEVSVHYDPMIAK	1	0	Oxidation (M)	1703.7825	0.78248559	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			16.631	16.631	2	9.67E-21	8985	DP1063-3	214.67	187.19			1.3825	1.1331	14.257	2	0	Median	75937000	35524000	40413000	2607	595	2442	5424;5425	11823;11824;11825;11826;11827;11828;11829;11830;11831	11830	722	9	9606
QGDEVSVHYDPMIAK	1	0	Unmodified	1687.7876	0.78757097	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		2				17.536	17.536	2;3	2.0179E-10	8751	DP1063-2	176.87	108.08			1.245	1.0416	NaN	1	0	Median	33324000	14623000	18701000	2608	595	2442	5426;5427	11832;11833;11834;11835	11835		4	9606
QGGGGGGGSVPGIER	0	1	Unmodified	1283.6218	0.62182627	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0.816		1	1	1		15.247	15.247	2	0.0018529	5705	DP1063-2	113.95	93.076			1.158	0.84948	11.548	3	0	Median	74229000	33357000	40873000	2609	323	2443	5428;5429;5430	11836;11837;11838;11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849	11838		14	9606
QGPLHGMLINTPYVTK	1	0	Oxidation (M)	1783.9291	0.92909025	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.33	0.471	2	1				17.788	17.788	2;3	0.00081635	9065	DP1063-2	85.672	85.672			1.0754	1.0485	1.6261	3	0	Plateau	258400000	119310000	139090000	2610	460	2444	5431;5432;5433	11850;11851;11852;11853;11854;11855;11856;11857	11857	595	8	9606
QGPLHGMLINTPYVTK	1	0	Unmodified	1767.9342	0.93417563	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					19.114	19.114	2;3	0.00039056	9167	DP1063-1	80.488	58.674			1.1008	0.89755	4.2964	2	0	Median	42193000	20823000	21370000	2611	460	2444	5434;5435	11858;11859;11860;11861	11858		4	9606
QGQYSPMAIEEQVAVIYAGVR	0	1	Oxidation (M)	2324.1471	0.14708153	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			23.662	23.662	2	0.034115	18415	DP1063-3	91.743	51.865			NaN	NaN	NaN	0	0	Median	0	0	0	2612	207	2445	5436	11862	11862	262	1	9606
QGTIFLAGPPLVK	1	0	Unmodified	1339.7864	0.7863724	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.981	20.981	2	0.00087125	14895	DP1063-3	140.16	140.16			1.3282	0.99023	8.3822	2	0	Median	97431000	43765000	53666000	2613	624	2446	5437;5438	11863;11864;11865;11866;11867;11868;11869	11863		7	9606
QGVDADINGLR	0	1	Unmodified	1156.5836	0.58364985	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0.816		1	1	1		17.386	17.386	2	1.6907E-06	10056	DP1063-3	172.23	126.55		+	NaN	NaN	NaN	0	0	Median	103110000	103110000	0	2614	251	2447	5439;5440;5441	11870;11871;11872;11873;11874;11875	11872		6	9606
QGVQVQVSTSNISSLEGAR	0	1	Unmodified	1959.0021	0.0021318501	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					19.007	19.007	2	0.034166	9113	DP1063-1	77.776	33.476			NaN	NaN	NaN	0	0	Median	0	0	0	2615	303	2448	5442	11876	11876		1	9606
QHFPATPLLDYALEVEK	1	0	Unmodified	1970.0149	0.014928368	330	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	2	0		1				22.337	22.337	3	0.039802	15241	DP1063-2	64.52	30.627			NaN	NaN	NaN	0	0	Median	3014200	0	3014200	2616	330	2449	5443	11877	11877		1	9606
QIFLGGVDKR	1	1	Unmodified	1131.64	0.64004252	108	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	1	4	0				1		16.577	16.577	2	0.0091362	8605	DP1063-4	64.04	26.491			2.5702	2.4989	NaN	1	0	Median	13241000	4489500	8751200	2617	108	2450	5444	11878;11879	11878		2	9606
QIGVEHVVVYVNK	1	0	Unmodified	1482.8195	0.81946344	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		17.387	17.387	3	0.012971	9713	DP1063-4	54.005	54.005			1.9807	1.371	NaN	1	0	Median	13134000	3692000	9441800	2618	306	2451	5445	11880;11881	11881		2	9606
QILIASHLPSYELR	0	1	Unmodified	1638.9093	0.90934108	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.587	19.587	2	0.0026943	9858	DP1063-1	107.11	58.926			NaN	NaN	NaN	0	0	Median	1726000	0	1726000	2619	43	2452	5446	11882	11882		1	9606
QINDIQLSR	0	1	Unmodified	1085.5829	0.58292157	469	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				1		16.751	16.751	2	0.024697	8787	DP1063-4	88.37	5.9439			NaN	NaN	NaN	0	0	Median	8557800	0	8557800	2620	469	2453	5447	11883;11884	11884		2	9606
QINWTVLYR	0	1	Unmodified	1191.64	0.64004252	421	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	21.126	21.126	2	0.0015996	14819	DP1063-5	122.18	122.18			3.5338	2.6393	NaN	1	0	Median	24148000	4634200	19514000	2621	421	2454	5448	11885;11886	11886		2	9606
QISNLQQSISDAEQR	0	1	Unmodified	1715.8438	0.84384029	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.67	1.49	2	1	1	1	1	18.472	18.472	2;3	8.8504E-59	11072	DP1063-4	276.2	221.72		+	NaN	NaN	NaN	0	0	Median	92355000	92355000	0	2622	101	2455	5449;5450;5451;5452;5453;5454	11887;11888;11889;11890;11891;11892;11893;11894;11895	11893		9	9606
QITLNDLPVGR	0	1	Unmodified	1224.6826	0.68263561	462	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					1	19.651	19.651	2	2.3307E-05	12898	DP1063-5	131.44	108.7			1.7991	1.3437	NaN	1	0	Median	16350000	6636200	9713900	2623	462	2456	5455	11896;11897;11898;11899	11897		4	9606
QITQVYGFYDECLR	0	1	Unmodified	1790.8298	0.82977013	384	P62714;P67775;P60510	PPP2CB;PPP2CA;PPP4C	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 4 catalytic subunit	yes	no	0	0	0	4	0				1		20.802	20.802	2	0.00028522	14259	DP1063-4	140.78	108.94			NaN	NaN	NaN	0	0	Median	2355700	0	2355700	2624	384	2457	5456	11900	11900		1	9606
QITSYGETCPGLEQYAIK	1	0	Unmodified	2056.9776	0.97755658	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			19.653	19.653	2	0.013272	13186	DP1063-3	93.228	59.924			NaN	NaN	NaN	0	0	Median	7084500	0	7084500	2625	319	2458	5457	11901	11901		1	9606
QITVNDLPVGR	0	1	Unmodified	1210.667	0.66698555	446;241	Q06830;P32119	PRDX1;PRDX2	Peroxiredoxin-1;Peroxiredoxin-2	no	no	0	0	0	5	0					1	18.468	18.468	2	7.4034E-05	11371	DP1063-5	135.43	135.43			NaN	NaN	NaN	0	0	Median	47497000	0	47497000	2626	446;241	2459	5458	11902;11903	11902		2	9606
QKADEAYLIGR	1	1	Unmodified	1262.6619	0.66190017	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	3	1		2		2		16.163	16.163	2;3	2.7657E-06	6969	DP1063-2	136.02	109.61			1.482	1.3947	8.7403	4	0	Linear	525620000	215830000	309790000	2627	154	2460	5459;5460;5461;5462	11904;11905;11906;11907;11908;11909;11910;11911;11912;11913;11914;11915	11907		12	9606
QKEEESQQQAVLEQER	1	1	Unmodified	1957.9341	0.93411186	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		2				14.812	14.812	2;3	1.3474E-23	5118	DP1063-2	208.08	169.28			NaN	NaN	NaN	0	0	Median	10670000	0	10670000	2628	654	2461	5463;5464	11916;11917;11918	11918		3	9606
QKEEESQQQAVLEQERR	1	2	Unmodified	2114.0352	0.035222892	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	2	2	0		1				14.166	14.166	3	0.010365	4324	DP1063-2	104.9	85.18			NaN	NaN	NaN	0	0	Median	17371000	0	17371000	2629	654	2462	5465	11919	11919		1	9606
QLASGLLLVTGPLVLNR	0	1	Unmodified	1763.0669	0.066904359	439	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		23.917	23.917	2	2.3903E-14	17912	DP1063-4	196.57	196.57			1.4478	0.90522	NaN	1	0	Median	7555200	3038600	4516600	2630	439	2463	5466	11920;11921;11922;11923	11920		4	9606
QLCDNAGFDATNILNK	1	0	Unmodified	1792.8414	0.84139745	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			20.152	20.152	2	6.1064E-14	13822	DP1063-3	193.49	109.3			2.1231	1.7049	NaN	1	0	Median	29804000	9935100	19869000	2631	601	2464	5467	11924;11925;11926	11925		3	9606
QLDSIVGER	0	1	Unmodified	1015.5298	0.52982336	20	CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538	KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	yes	no	0	0	0	4	0				1		16.847	16.847	2	0.049145	8929	DP1063-4	80.219	13.868		+	NaN	NaN	NaN	0	0	Median	4463100	4463100	0	2632	20	2465	5468	11927	11927		1	9606
QLEEAEEEAQR	0	1	Unmodified	1330.6001	0.60008777	252	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					14.813	14.813	2	9.2709E-06	4300	DP1063-1	144.65	110.46			1.9563	1.5979	NaN	1	0	Median	3871700	1502100	2369600	2633	252	2466	5469	11928;11929;11930;11931	11928		4	9606
QLFHPEQLITGK	1	0	Unmodified	1409.7667	0.76669959	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			19.108	19.108	2	1.4879E-05	12448	DP1063-3	166.29	0			1.7219	1.3827	NaN	1	0	Median	52041000	17450000	34591000	2634	413;605	2467	5470	11932;11933	11932		2	9606
QLFHPEQLITGKEDAANNYAR	1	1	Unmodified	2414.1979	0.19787154	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	3.4	0.49			3	2		18.61	18.61	2;3;4	2.1921999999999999E-26	11771	DP1063-3	226.23	226.23			1.7288	1.568	13.407	5	0	Median	275420000	95445000	179970000	2635	413;605	2468	5471;5472;5473;5474;5475	11934;11935;11936;11937;11938;11939;11940;11941;11942;11943;11944;11945;11946;11947;11948;11949;11950;11951;11952	11939		19	9606
QLFLGGVDR	0	1	Unmodified	1003.5451	0.5450795	158	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	0	0	0	4	0				1		18.929	18.929	2	0.03162	11775	DP1063-4	72.485	23.067			1.6307	1.0904	NaN	1	0	Median	5308300	2538700	2769500	2636	158	2469	5476	11953	11953		1	9606
QLIVGVNK	1	0	Unmodified	869.53345	0.53345218	412	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	1	0	1					16.374	16.374	2	0.024338	6101	DP1063-1	90.777	44.406			2.2688	1.7792	NaN	1	0	Median	7891200	2608600	5282600	2637	412	2470	5477	11954	11954		1	9606
QLLQANPILEAFGNAK	1	0	Unmodified	1725.9414	0.94136949	252	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	1	0	3					23.216	23.216	2	0.0013162	14109	DP1063-1	116.01	64.919			NaN	NaN	NaN	0	0	Median	1480800	0	1480800	2638	252	2471	5478;5479;5480	11955;11956;11957	11955		3	9606
QLLTLSSELSQAR	0	1	Unmodified	1444.7886	0.78855725	170	P15311	EZR	Ezrin	yes	yes	0	0	0	2	0		1				20.161	20.161	2	0.036924	12337	DP1063-2	73.781	7.16			NaN	NaN	NaN	0	0	Median	0	0	0	2639	170	2472	5481	11958	11958		1	9606
QLQAETEPIVK	1	0	Unmodified	1254.682	0.68196691	348	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	4	0				1		16.313	16.313	2	0.016766	8389	DP1063-4	84.213	37.751			NaN	NaN	NaN	0	0	Median	2453600	0	2453600	2640	348	2473	5482	11959;11960;11961	11961		3	9606
QLQVVPLFGDMQIELAR	0	1	Oxidation (M)	1972.0452	0.045182639	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	1	0	2	0		1				22.927	22.927	2	0.00051728	15957	DP1063-2	145.29	145.29			1.0813	0.78933	NaN	1	0	Median	10936000	4627900	6307700	2641	543;581	2474	5483	11962;11963;11964;11965	11962	676	4	9606
QLSSGVSEIR	0	1	Unmodified	1074.5669	0.56693715	104	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	15.785	15.785	2	0.013093	8064	DP1063-5	92.838	43.248			NaN	NaN	NaN	0	0	Median	9225700	0	9225700	2642	104	2475	5484	11966;11967	11967		2	9606
QLTEEDGVHSVIEENIK	1	0	Unmodified	1938.9535	0.95345032	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.75	1.39	2	2	1	2	1	18.418	18.418	2;3	1.9659000000000003E-122	8316	DP1063-1	329.46	329.46			1.3586	1.0853	8.376	8	0	Median	276060000	111370000	164690000	2643	460	2476	5485;5486;5487;5488;5489;5490;5491;5492	11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990;11991;11992;11993;11994;11995	11968		28	9606
QLYEEEIRELQSQISDTSVVLSMDNSR	0	2	Oxidation (M)	3184.5194	0.5194012	15	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	1	4	0				1		23.47	23.47	3	5.2205E-05	17426	DP1063-4	102.72	76.889		+	NaN	NaN	NaN	0	0	Median	2644300	0	2644300	2644	15	2477	5493	11996;11997;11998	11996	17	3	9606
QMGELLGR	0	1	Oxidation (M)	918.4593	0.45930096	689				yes	yes	0	1	0	4	0				1		15.877	15.877	2	0.0088799	7767	DP1063-4	100.19	13.676	+		1.4263	0.95683	NaN	1	0	Median	18010000	7164400	10845000	2645	689	2478	5494	11999	11999	793	1	9606
QNLEPLFEQYINNLR	0	1	Unmodified	1889.9636	0.9635615	20	CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538	KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	0	3	0			1			24.168	24.168	2	0.00022699	19024	DP1063-3	169.82	89.116		+	NaN	NaN	NaN	0	0	Median	3539100	3539100	0	2646	20	2479	5495	12000;12001	12000		2	9606
QNQTTAISTPASSEISK	1	0	Unmodified	1761.8745	0.87447172	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	0	1					16.249	16.249	2	0.053024	5958	DP1063-1	71.806	2.913			NaN	NaN	NaN	0	0	Median	0	0	0	2647	314	2480	5496	12002	12002		1	9606
QNQTTSAVSTPASSETSK	1	0	Unmodified	1822.8545	0.85446456	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	1	0	1					14.098	14.098	2	0.0020892	3520	DP1063-1	154.72	76.231			NaN	NaN	NaN	0	0	Median	1167600	0	1167600	2648	314	2481	5497	12003;12004	12003		2	9606
QPTIFQNK	1	0	Unmodified	974.51853	0.5185304	376	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	16.11	16.11	2	0.025882	8415	DP1063-5	89.142	36.206			3.6543	3.0934	NaN	1	0	Median	29484000	7127800	22356000	2649	376	2482	5498	12005	12005		1	9606
QPTVTSVCSETSQELAEGQR	0	1	Unmodified	2206.0172	0.017189567	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	3	0			1			18.018	18.018	2	0.0013462	10919	DP1063-3	125.47	97.606			NaN	NaN	NaN	0	0	Median	0	0	0	2650	582	2483	5499	12006	12006		1	9606
QPYAVSELAGHQTSAESWGTGR	0	1	Unmodified	2331.088	0.087986745	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	4	0				2		18.403	18.403	2;3	2.1501E-52	11047	DP1063-4	260.08	224.96			2.0595	1.5237	NaN	1	0	Median	44978000	12312000	32666000	2651	259	2484	5500;5501	12007;12008;12009;12010;12011;12012;12013;12014	12013		8	9606
QQPTQFINPETPGYVGFANLPNQVHR	0	1	Unmodified	2951.4678	0.46783882	498	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	4	0				1		20.829	20.829	3	7.8446E-07	14363	DP1063-4	119.72	97.324			NaN	NaN	NaN	0	0	Median	6153200	0	6153200	2652	498	2485	5502	12015	12015		1	9606
QQQLLNEENLR	0	1	Unmodified	1383.7106	0.71064128	634	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			1			17.324	17.324	2	0.0036874	10008	DP1063-3	107.79	56.26			NaN	NaN	NaN	0	0	Median	9298900	0	9298900	2653	634	2486	5503	12016;12017	12016		2	9606
QQQQIEAQQQLLATK	1	0	Unmodified	1753.9323	0.93226137	475	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	2	0		1				17.302	17.302	2	3.241E-17	8421	DP1063-2	223.31	157.26			NaN	NaN	NaN	0	0	Median	10539000	0	10539000	2654	475	2487	5504	12018;12019	12019		2	9606
QQTQHAVEGDCDIHVLK	1	0	Unmodified	1976.9374	0.9374231	18	CON__P12763			yes	yes	0	0	0	3.4	0.49			3	2		15.284	15.284	2;3;4	1.0556E-46	7233	DP1063-3	270.21	230.14		+	NaN	NaN	NaN	0	0	Median	211820000	211820000	0	2655	18	2488	5505;5506;5507;5508;5509	12020;12021;12022;12023;12024;12025;12026;12027;12028	12024		9	9606
QQYESVAAK	1	0	Unmodified	1022.5033	0.50327426	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			13.626	13.626	2	0.03389	5023	DP1063-3	70.919	38.078			3.8389	3.0826	NaN	1	0	Median	8617500	1997100	6620400	2656	136	2489	5510	12029;12030	12029		2	9606
QREELGQGLQGVEQK	1	1	Unmodified	1697.8697	0.86966111	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			2			15.895	15.895	2;3	0.0051091	8030	DP1063-3	136.27	59.993			1.2221	1.1085	NaN	1	0	Median	18184000	7371000	10813000	2657	449	2490	5511;5512	12031;12032	12032		2	9606
QSGEAFVELGSEDDVK	1	0	Unmodified	1708.7792	0.77917435	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		19.045	19.045	2	0.05283	11928	DP1063-4	71.558	24.256			NaN	NaN	NaN	0	0	Median	0	0	0	2658	327	2491	5513	12033	12033		1	9606
QSLEASLAETEGR	0	1	Unmodified	1389.6736	0.67358707	19	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.5	1.12	1	1	1	1		18.252	18.252	2	6.5919E-26	11207	DP1063-3	242.97	183.04		+	NaN	NaN	NaN	0	0	Median	77280000	77280000	0	2659	19	2492	5514;5515;5516;5517	12034;12035;12036;12037;12038;12039;12040	12038		7	9606
QSLETICLLLAYK	1	0	Unmodified	1550.8378	0.83781563	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0				1		23.189	23.189	2	1.3775E-11	17136	DP1063-4	201.84	133			NaN	NaN	NaN	0	0	Median	9543300	0	9543300	2660	260;365;366	2493	5518	12041;12042	12041		2	9606
QSNVAAPGDATPPAEK	1	0	Unmodified	1551.7529	0.75290002	593	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		2				14.678	14.678	2	0.0024369	4971	DP1063-2	127.71	88.84			NaN	NaN	NaN	0	0	Median	0	0	0	2661	593	2494	5519;5520	12043;12044	12043		2	9606
QSPNSYVVIMNGSCVEVDVHR	0	1	Oxidation (M)	2405.1104	0.11037845	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				18.365	18.365	3	2.2861E-06	8329	DP1063-1	101.17	101.17			1.3181	0.99634	8.4353	2	0	Median	29014000	14401000	14614000	2662	460	2495	5521;5522	12045;12046;12047;12048;12049;12050;12051;12052	12046	596	8	9606
QSSFALLGDLTK	1	0	Unmodified	1278.682	0.68196691	572	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	yes	no	0	0	0	2	0		1				21.802	21.802	2	0.001802	14567	DP1063-2	119.34	62.772			NaN	NaN	NaN	0	0	Median	3937100	0	3937100	2663	572	2496	5523	12053;12054	12054		2	9606
QSSGASSSSFSSSR	0	1	Unmodified	1360.5855	0.58550034	42	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			13.374	13.374	2	0.00013065	4751	DP1063-3	160.72	148.87			2.9121	2.2758	NaN	1	0	Median	5930800	2058800	3872000	2664	42	2497	5524	12055;12056;12057	12057		3	9606
QSVEADINGLR	0	1	Unmodified	1200.6099	0.6098646	19	CON__P13645;P13645;CON__P02535-1;CON__P08730-1;CON__ENSEMBL:ENSP00000377550;P13646;CON__Q2M2I5;Q2M2I5;CON__P13646-1	KRT10;KRT13;KRT24	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 24	yes	no	0	0	0	4	0				1		17.976	17.976	2	0.0013686	10465	DP1063-4	125.71	86.959		+	NaN	NaN	NaN	0	0	Median	4410600	4410600	0	2665	19	2498	5525	12058	12058		1	9606
QSVEADINGLRR	0	2	Unmodified	1356.711	0.71097563	19	CON__P13645;P13645;CON__P02535-1;CON__P08730-1;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1	KRT10;KRT13	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13	yes	no	0	0	1	2.33	1.25	1	1		1		16.857	16.857	2	6.149E-06	7834	DP1063-2	153.1	78.94		+	NaN	NaN	NaN	0	0	Median	29806000	29806000	0	2666	19	2499	5526;5527;5528	12059;12060;12061;12062;12063;12064	12062		6	9606
QSVELPK	1	0	Unmodified	799.44397	0.44396847	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2	0		1				15.426	15.426	2	0.051553	5750	DP1063-2	89.296	33.174			NaN	NaN	NaN	0	0	Median	111710000	0	111710000	2667	524	2500	5529	12065	12065		1	9606
QSVELPKGDLGPASPSQELGSQPVPGGDGAPALGK	2	0	Unmodified	3339.6947	0.69466345	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2	0		1				19.422	19.422	3	4.512E-06	11298	DP1063-2	82.017	61.948			NaN	NaN	NaN	0	0	Median	10155000	0	10155000	2668	524	2501	5530	12066;12067;12068;12069	12066		4	9606
QSVENDIHGLR	0	1	Unmodified	1266.6317	0.63166267	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		15.714	15.714	3	0.001186	7536	DP1063-4	89.9	52.287			2.7226	1.7939	NaN	1	0	Median	15641000	3596800	12044000	2669	118	2502	5531	12070;12071;12072;12073	12071		4	9606
QSVENDIHGLRK	1	1	Unmodified	1394.7266	0.72662569	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	4	0				1		14.519	14.519	3	0.0023756	5905	DP1063-4	77.387	77.387			2.7715	2.6946	NaN	1	0	Median	16057000	4490500	11567000	2670	118	2503	5532	12074;12075;12076	12074		3	9606
QTALVELLK	1	0	Unmodified	1013.6121	0.61209643	14	CON__P02769			yes	yes	0	0	0	3	1.41	1	1	1	1	1	20.29	20.29	2	0.00067816	12550	DP1063-2	129.42	60.634		+	NaN	NaN	NaN	0	0	Median	598960000	598960000	0	2671	14	2504	5533;5534;5535;5536;5537	12077;12078;12079;12080;12081;12082;12083;12084;12085;12086	12079		10	9606
QTNEMLRGIK	1	1	Oxidation (M)	1204.6234	0.62340617	454	Q09428	ABCC8	ATP-binding cassette sub-family C member 8	yes	yes	0	1	1	3	0			1			19.427	19.427	2	0.016604	12827	DP1063-3	90.709	26.502			NaN	NaN	NaN	0	0	Median	38437000	0	38437000	2672	454	2505	5538	12087	12087	555	1	9606
QTQIFTTYSDNQPGVLIQVYEGER	0	1	Unmodified	2785.3559	0.35588833	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			22.542	22.542	2	1.0159E-05	17014	DP1063-3	134.44	111.44			NaN	NaN	NaN	0	0	Median	0	0	0	2673	149	2506	5539	12088	12088		1	9606
QTQTFTTYSDNQPGVLIQVYEGER	0	1	Unmodified	2773.3195	0.31950282	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			21.721	21.721	2	3.1152E-15	15945	DP1063-3	203.53	175.89			NaN	NaN	NaN	0	0	Median	6731300	0	6731300	2674	153	2507	5540	12089;12090	12089		2	9606
QTTTGSAVPIR	0	1	Unmodified	1129.6091	0.60913632	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.89	14.89	2	0.019747	4460	DP1063-1	72.243	38.322			1.2507	1.0027	NaN	1	0	Median	4925100	2441400	2483700	2675	43	2508	5541	12091;12092	12091		2	9606
QTVAVGVIK	1	0	Unmodified	913.55967	0.55966693	412	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	0				1		16.265	16.265	2	0.039325	8253	DP1063-4	67.169	29.009			2.455	1.6993	NaN	1	0	Median	80856000	23536000	57320000	2676	412	2509	5542	12093	12093		1	9606
QTYSTEPNNLK	1	0	Unmodified	1293.6201	0.62009493	290	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	5	0					1	14.753	14.753	2	0.0041654	6801	DP1063-5	96.668	73.524			1.9837	1.6792	NaN	1	0	Median	12041000	3465200	8575500	2677	290	2510	5543	12094;12095	12095		2	9606
QVDQLTNDK	1	0	Unmodified	1059.5197	0.51965261	136	P08670	VIM	Vimentin	yes	yes	0	0	0	4	0				1		13.934	13.934	2	0.056568	5213	DP1063-4	78.264	51.88			NaN	NaN	NaN	0	0	Median	1727600	0	1727600	2678	136	2511	5544	12096	12096		1	9606
QVEDGEVFDFR	0	1	Unmodified	1339.6044	0.60444487	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		3				20.058	20.058	2	5.3171E-06	12228	DP1063-2	161.51	122.76			1.3432	0.97845	NaN	1	0	Median	12233000	7451200	4782100	2679	666	2512	5545;5546;5547	12097;12098;12099;12100	12099		4	9606
QVENAGAIGPSR	0	1	Unmodified	1197.6102	0.61019895	645	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	3	0			1			14.624	14.624	2	0.0026565	6275	DP1063-3	110.53	35.424			NaN	NaN	NaN	0	0	Median	4789300	0	4789300	2680	645	2513	5548	12101;12102	12101		2	9606
QVFFELNGQLR	0	1	Unmodified	1349.7092	0.70918471	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		20.962	20.962	2	4.539E-10	13414	DP1063-2	190.73	190.73			1.4694	1.0992	17.989	2	0	Median	147770000	61752000	86018000	2681	154	2514	5549;5550	12103;12104;12105;12106;12107;12108;12109	12103		7	9606
QVGYENAGTVEFLVDR	0	1	Unmodified	1795.8741	0.87407779	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.2	0.576		31	1	3		27.302	27.302	2;3	4.7732E-54	13412	DP1063-2	269.04	269.04			1.2595	0.95167	18.205	5	0	Median	748630000	304600000	444030000	2682	154	2515	5551;5552;5553;5554;5555;5556;5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585	12110;12111;12112;12113;12114;12115;12116;12117;12118;12119;12120;12121;12122;12123;12124;12125;12126;12127;12128;12129;12130;12131;12132;12133;12134;12135;12136;12137;12138;12139;12140;12141;12142;12143;12144;12145;12146;12147;12148;12149;12150;12151;12152;12153;12154;12155;12156;12157;12158;12159;12160;12161;12162;12163;12164;12165;12166;12167;12168;12169;12170;12171;12172	12110		63	9606
QVHPDTGISSK	1	0	Unmodified	1167.5884	0.58840088	66;126	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					1	12.935	12.935	2	1.8459E-49	4674	DP1063-5	261.03	178.79			1.4911	1.2622	NaN	1	0	Median	46062000	17064000	28997000	2683	66;126	2516	5586	12173;12174;12175;12176;12177	12176		5	9606
QVIGTGSFFPK	1	0	Unmodified	1179.6288	0.62880913	476	Q13642	FHL1	Four and a half LIM domains protein 1	yes	yes	0	0	0	4	0				1		19.807	19.807	2	0.028698	12954	DP1063-4	81.972	42.95			NaN	NaN	NaN	0	0	Median	0	0	0	2684	476	2517	5587	12178	12178		1	9606
QVLDNLTMEK	1	0	Oxidation (M)	1205.5962	0.59618837	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2.5	0.5		1	1			17.144	17.144	2	0.00026403	9642	DP1063-3	134.26	83.201		+	NaN	NaN	NaN	0	0	Median	102100000	102100000	0	2685	251	2518	5588;5589	12179;12180;12181	12180	290	3	9606
QVLEPSFR	0	1	Unmodified	974.51853	0.5185304	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		17.424	17.424	2	0.0037526	9748	DP1063-4	120.46	41.006			NaN	NaN	NaN	0	0	Median	10598000	10598000	0	2686	218	2519	5590	12182;12183	12182		2	9606
QVLIASHLPSYELR	0	1	Unmodified	1624.8937	0.89369102	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.68	1.13	13	2	1	3		22.431	22.431	2;3	7.3729E-21	10892	DP1063-2	225.55	195.78			1.2361	0.99182	38.727	7	0	Median	1002399999.9999999	451980000	550430000	2687	460	2520	5591;5592;5593;5594;5595;5596;5597;5598;5599;5600;5601;5602;5603;5604;5605;5606;5607;5608;5609	12184;12185;12186;12187;12188;12189;12190;12191;12192;12193;12194;12195;12196;12197;12198;12199;12200;12201;12202;12203;12204;12205;12206;12207;12208;12209;12210;12211;12212;12213;12214;12215;12216;12217	12210		34	9606
QVNYEVDR	0	1	Unmodified	1021.4829	0.48287317	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.007	15.007	2	0.00050617	4552	DP1063-1	132.08	115.61			1.346	1.2045	NaN	1	0	Median	67804000	29921000	37883000	2688	460	2521	5610	12218;12219;12220;12221	12219		4	9606
QVNYEVDRR	0	2	Unmodified	1177.584	0.5839842	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					13.957	13.957	2	4.6753E-11	3334	DP1063-1	167.23	138.5			1.2893	1.1851	NaN	1	0	Median	40490000	17579000	22910000	2689	460	2522	5611	12222;12223;12224;12225;12226	12222		5	9606
QVQAEVPGSPIFVMR	0	1	Oxidation (M)	1672.8607	0.86067633	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.6	0.8	3	1	1			19.986	19.986	2;3	9.4885E-05	9643	DP1063-1	160.67	160.67			1.1317	0.92528	19.112	5	0	Median	462480000	217700000	244780000	2690	460	2523	5612;5613;5614;5615;5616	12227;12228;12229;12230;12231;12232;12233;12234;12235;12236;12237;12238;12239;12240;12241	12229	597	15	9606
QVQAEVPGSPIFVMR	0	1	Unmodified	1656.8658	0.86576171	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	0.829	2	1	1			21.546	21.546	2	1.8347E-81	11397	DP1063-1	290.07	290.07			1.0992	0.99873	17.807	3	0	Plateau	164600000	86962000	77641000	2691	460	2523	5617;5618;5619;5620	12242;12243;12244;12245;12246;12247;12248;12249;12250;12251;12252;12253;12254;12255	12245		14	9606
QVSDDLTER	0	1	Unmodified	1061.4989	0.49891717	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				2		15.113	15.113	2	0.00093823	6751	DP1063-4	158.07	86.779			NaN	NaN	NaN	0	0	Median	0	0	0	2692	249	2524	5621;5622	12256;12257	12257		2	9606
QVSDLISVLR	0	1	Unmodified	1128.6503	0.65027285	178	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			21.209	21.209	2	0.004822	15292	DP1063-3	95.358	41.201			2.0646	1.5509	NaN	1	0	Median	9292900	2626000	6666900	2693	178	2525	5623	12258;12259	12259		2	9606
QVTITGSAASISLAQYLINAR	0	1	Unmodified	2176.1852	0.18518159	507	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	4	0				4		23.645	23.645	2;3	1.058E-09	17709	DP1063-4	193.45	152.4			3.9788	2.7519	NaN	1	0	Median	8123800	1126800	6997000	2694	507	2526	5624;5625;5626;5627	12260;12261;12262;12263;12264;12265	12262		6	9606
QVTITGSAASISLAQYLINVR	0	1	Unmodified	2204.2165	0.21648172	508	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		24.044	24.044	2	3.0356999999999997E-52	18147	DP1063-4	260.49	195.85			NaN	NaN	NaN	0	0	Median	1593500	0	1593500	2695	508	2527	5628	12266;12267	12266		2	9606
QVTQLAIDTEER	0	1	Unmodified	1401.71	0.70997257	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	0	1					17.422	17.422	2	5.3357E-06	7182	DP1063-1	149.33	92.522			NaN	NaN	NaN	0	0	Median	4512300	0	4512300	2696	442	2528	5629	12268;12269;12270	12269		3	9606
QVVESAYEVIK	1	0	Unmodified	1263.6711	0.67106787	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		18.198	18.198	2	0.0040446	10739	DP1063-4	103.7	68.548			NaN	NaN	NaN	0	0	Median	12585000	0	12585000	2697	91	2529	5630	12271;12272	12271		2	9606
QVVNIPSFIVR	0	1	Unmodified	1270.7398	0.73975656	291	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	21.39	21.39	2	1.0984E-05	15062	DP1063-5	143.04	118.2			1.9435	1.4515	NaN	1	0	Median	13161000	4247500	8913400	2698	291	2530	5631	12273;12274	12273		2	9606
QVVQGLLSETYLEAHR	0	1	Unmodified	1841.9636	0.9635615	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				19.865	19.865	3	0.00029175	11943	DP1063-2	148.85	121.6			NaN	NaN	NaN	0	0	Median	18418000	0	18418000	2699	246	2531	5632	12275;12276	12275		2	9606
QWYESHYALPLGR	0	1	Unmodified	1618.7892	0.78922595	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.394	19.394	3	0.013624	12591	DP1063-5	53.034	34.396			1.8742	1.3997	NaN	1	0	Median	10826000	3976900	6849100	2700	368	2532	5633	12277	12277		1	9606
RACYGVLR	0	2	Unmodified	993.51782	0.51781889	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		14.589	14.589	2	0.052821	6057	DP1063-4	46.016	2.2465			2.4683	2.2132	NaN	1	0	Median	7109000	2061600	5047500	2701	200	2533	5634	12278	12278		1	9606
RAEFTVETR	0	2	Unmodified	1107.5673	0.5672715	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					14.846	14.846	2	0.054308	4395	DP1063-1	80.916	36.539			NaN	NaN	NaN	0	0	Median	3928100	0	3928100	2702	190	2534	5635	12279	12279		1	9606
RAGELTEDEVER	0	2	Unmodified	1402.6688	0.66883604	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	5	0					2	14.564	14.564	2;3	0.00010493	6583	DP1063-5	139.32	139.32			1.8448	1.5697	0.40039	2	0	Median	37968000	12703000	25265000	2703	374	2535	5636;5637	12280;12281;12282;12283;12284;12285;12286	12281		7	9606
RAMGEQAVALAR	0	2	Oxidation (M)	1287.6718	0.67175335	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			2			14.144	14.144	2;3	0.00146	5677	DP1063-3	86.911	61.437			1.4566	1.3318	2.2033	2	0	Median	119750000	45196000	74554000	2704	110	2536	5638;5639	12287;12288;12289;12290;12291;12292;12293;12294	12290	83	8	9606
RAMGEQAVALAR	0	2	Unmodified	1271.6768	0.67683873	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			15.365	15.365	2	0.00014208	7331	DP1063-3	123.67	72.866			1.3264	1.2127	NaN	1	0	Median	9355400	3833400	5522000	2705	110	2536	5640	12295;12296	12296		2	9606
RAPDQAAEIGSR	0	2	Unmodified	1269.6426	0.64256171	523	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	1	4	0				1		13.591	13.591	3	0.0030534	4824	DP1063-4	71.558	49.066			1.397	1.2526	NaN	1	0	Median	2578300	1049400	1528900	2706	523	2537	5641	12297;12298	12298		2	9606
RAPFDLFENK	1	1	Unmodified	1235.6299	0.62987176	135	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	2	0		1				19.509	19.509	2	0.0026627	11463	DP1063-2	80.916	80.916			2.3363	2.2009	NaN	1	0	Median	24851000	6398300	18453000	2707	135	2538	5642	12299;12300;12301	12301		3	9606
RAPFDLFENR	0	2	Unmodified	1263.636	0.63601977	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	2	0		1				19.746	19.746	2	0.00022709	11675	DP1063-2	112.83	84.969			2.0994	1.955	NaN	1	0	Median	30166000	9884300	20282000	2708	132	2539	5643	12302;12303;12304;12305	12304		4	9606
RAPSVANVGSHCDLSLK	1	1	Unmodified	1809.9156	0.91556545	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					15.902	15.902	3	0.0075873	5547	DP1063-1	83.758	64.823			NaN	NaN	NaN	0	0	Median	2447100	0	2447100	2709	190	2540	5644	12306;12307	12307		2	9606
RAYIAYELNSVQHR	0	2	Unmodified	1718.8853	0.8852516	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				16.755	16.755	2;3	0.00036959	7689	DP1063-2	127.07	109.93			1.2056	1.1154	7.6355	2	0	Median	116430000	50404000	66031000	2710	460	2541	5645;5646	12308;12309;12310;12311;12312;12313	12313		6	9606
RCLYASVLTAQPR	0	2	Unmodified	1533.8086	0.80858118	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	2	0		1				17.634	17.634	3	0.0028225	8896	DP1063-2	89.663	55.162			NaN	NaN	NaN	0	0	Median	7526400	0	7526400	2711	165	2542	5647	12314	12314		1	9606
RDELTLEGIK	1	1	Unmodified	1172.6401	0.6401021	264	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	1	4	0				1		17.349	17.349	2	0.017133	9584	DP1063-4	57.55	29.725			1.6412	1.5957	NaN	1	0	Median	3400400	947200	2453200	2712	264	2543	5648	12315	12315		1	9606
RDHALLEEQSK	1	1	Unmodified	1324.6735	0.67352749	60	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	1	2	0		1				13.175	13.175	3	0.00025042	3157	DP1063-2	91.202	76.508			3.3764	3.1807	NaN	1	0	Median	7799300	2146500	5652800	2713	60	2544	5649	12316;12317	12317		2	9606
RDPHLACVAYER	0	2	Unmodified	1485.7147	0.7146808	428	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	1	1	0	1					14.973	14.973	3	0.018492	4518	DP1063-1	49.12	17.595			1.7771	1.6334	NaN	1	0	Median	3175200	1109100	2066100	2714	428	2545	5650	12318	12318		1	9606
RDQDNMQAELNR	0	2	Oxidation (M)	1504.6689	0.66885282	243	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	1	1	2	0		1				12.936	12.936	3	0.037218	2863	DP1063-2	59.975	41.244			NaN	NaN	NaN	0	0	Median	1661200	0	1661200	2715	243	2546	5651	12319	12319	283	1	9606
REPLSLINVR	0	2	Unmodified	1195.7037	0.70370541	583	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	1	4	0				1		17.969	17.969	2	0.035432	10468	DP1063-4	82.749	22.73			NaN	NaN	NaN	0	0	Median	3034800	0	3034800	2716	583	2547	5652	12320	12320		1	9606
RFDDAVVQSDMK	1	1	Oxidation (M)	1425.6558	0.65582851	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			2			15.134	15.134	2;3	0.00039421	6969	DP1063-3	126.71	106.71			3.06	2.7754	2.935	2	0	Median	60265000	12997000	47268000	2717	153	2548	5653;5654	12321;12322;12323;12324;12325;12326;12327	12321	171	7	9606
RFDDAVVQSDMK	1	1	Unmodified	1409.6609	0.66091389	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			16.436	16.436	2	5.9545E-06	8773	DP1063-3	161.93	102.95			NaN	NaN	NaN	0	0	Median	16344000	0	16344000	2718	153	2548	5655	12328;12329	12328		2	9606
RFDEILEASDGIMVAR	0	2	Oxidation (M)	1836.904	0.90399771	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	1	3	0			1			19.953	19.953	3	0.0012101	13646	DP1063-3	70.335	70.335			1.6929	1.5478	NaN	1	0	Median	14591000	4138300	10453000	2719	168	2549	5656	12330	12330	214	1	9606
RFELYFQGPSSNKPR	1	2	Unmodified	1824.9271	0.92711641	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	2	2	0		1				17.576	17.576	3	0.0007478	8823	DP1063-2	99.055	76.707			1.6291	1.8483	NaN	1	0	Median	13334000	5958800	7375700	2720	246	2550	5657	12331;12332	12332		2	9606
RFPGYDSESK	1	1	Unmodified	1184.5462	0.54620171	288	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	4	0				1		14.719	14.719	2	0.0028588	6211	DP1063-4	79.974	79.974			2.4261	2.3588	NaN	1	0	Median	5370500	1377900	3992600	2721	288	2551	5658	12333;12334;12335	12335		3	9606
RFTIGKSMGLDTQLEEETR	1	2	Unmodified	2210.1001	0.10013134	686				yes	yes	0	0	2	2.5	1.12	1	1	1	1		19.856	19.856	3	0.002116	10146	DP1063-1	50.188	18.293	+		0.14834	0.16395	14.097	4	0	Median	5295300000	4740400000	554810000	2722	686	2552	5659;5660;5661;5662	12336;12337;12338;12339;12340	12336		5	9606
RGEEGHDPKEPEQLR	1	2	Unmodified	1775.8551	0.85507368	322	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	4	0				1		12.914	12.914	4	0.0025417	4119	DP1063-4	75.316	75.316			1.7742	2.0914	NaN	1	0	Median	3286700	1028300	2258400	2723	322	2553	5663	12341;12342	12341		2	9606
RGPCIIYNEDNGIIK	1	1	Unmodified	1760.888	0.88795372	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	4	0				2		17.899	17.899	2;3	0.00082342	10350	DP1063-4	78.932	78.932			2.1056	2.0472	NaN	1	0	Median	5901000	1985100	3916000	2724	259	2554	5664;5665	12343;12344;12345	12344		3	9606
RGPEEDRFSR	0	3	Unmodified	1247.6007	0.6006969	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	2	2	0		1				13.019	13.019	3	0.046317	2957	DP1063-2	46.844	22.755			1.8304	1.9571	NaN	1	0	Median	5413200	2241000	3172200	2725	483	2555	5666	12346	12346		1	9606
RHPEYAVSVLLR	0	2	Unmodified	1438.8045	0.80448208	14	CON__P02769			yes	yes	0	0	1	2.14	0.639	2	22	2	2		26.815	26.815	2;3	1.1473E-06	8735	DP1063-2	177.57	117.4		+	NaN	NaN	NaN	0	0	Median	6662199999.999999	6662199999.999999	0	2726	14	2556	5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694	12347;12348;12349;12350;12351;12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364;12365;12366;12367;12368;12369;12370;12371;12372;12373;12374;12375;12376;12377;12378;12379;12380;12381;12382;12383;12384;12385;12386;12387;12388;12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412;12413;12414;12415;12416;12417;12418;12419;12420;12421;12422;12423;12424;12425;12426;12427;12428;12429;12430;12431	12355		85	9606
RHPYFYAPELLYYANK	1	1	Unmodified	2044.0207	0.020682448	14	CON__P02769			yes	yes	0	0	1	3.05	0.653		3	15	2	1	26.647	26.647	2;3;4	2.7995E-17	12434	DP1063-2	196.7	159.34		+	1.1784	1.0046	NaN	1	0	Median	1591099999.9999998	1583099999.9999998	7940900	2727	14	2557	5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714;5715	12432;12433;12434;12435;12436;12437;12438;12439;12440;12441;12442;12443;12444;12445;12446;12447;12448;12449;12450;12451;12452;12453;12454;12455;12456;12457;12458;12459;12460;12461;12462;12463;12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474	12434		43	9606
RHVFGESDELIGQK	1	1	Unmodified	1613.8162	0.81616898	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	1	5	0					3	16.045	16.045	2;3	0.00058744	8392	DP1063-5	106.76	56.471			NaN	NaN	NaN	0	0	Median	3124300	3124300	0	2728	347	2558	5716;5717;5718	12475;12476;12477	12477		3	9606
RIGYPVMIK	1	1	Oxidation (M)	1091.6161	0.61613595	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.5	0.5		1	1			16.199	16.199	2	0.021045	6929	DP1063-2	71.877	24.883			1.3008	1.2024	8.9234	2	0	Median	194400000	81463000	112940000	2729	595	2559	5719;5720	12478;12479;12480;12481	12478	714	3	9606
RIGYPVMIK	1	1	Unmodified	1075.6212	0.62122133	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0.816		1	1	1		17.058	17.058	2	0.0014079	8140	DP1063-2	101.64	65.086			1.4195	1.3372	13.726	3	0	Plateau	101360000	39165000	62196000	2730	595	2559	5721;5722;5723	12482;12483;12484;12485;12486;12487;12488;12489	12485		8	9606
RILNVPQELYEK	1	1	Unmodified	1500.83	0.83002813	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					18.36	18.36	2;3	7.5568E-05	8305	DP1063-1	134.56	111.53			1.1438	1.0665	6.3761	2	0	Median	47641000	21158000	26483000	2731	460	2560	5724;5725	12490;12491;12492;12493;12494;12495;12496;12497;12498	12492		9	9606
RIPVQAVWAGWGHASENPK	1	1	Unmodified	2102.081	0.080991294	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	1	1.33	0.471	2	1				18.871	18.871	3;4	2.0285E-45	8950	DP1063-1	242.9	219.31			0.99816	0.95603	7.6199	3	0	Plateau	195930000	92127000	103800000	2732	43;460	2561	5726;5727;5728	12499;12500;12501;12502;12503;12504;12505;12506;12507	12503		9	9606
RIQEEMEKER	1	2	Unmodified	1346.6612	0.66124824	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	2	2	0		1				13.088	13.088	3	0.0042994	2989	DP1063-2	117.09	67.591			NaN	NaN	NaN	0	0	Median	6148600	0	6148600	2733	654	2562	5729	12508;12509	12508		2	9606
RISAVSVAER	0	2	Unmodified	1086.6146	0.61455605	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	2	0		1				14.472	14.472	2	0.0055153	4713	DP1063-2	67.207	19.501			2.1068	1.9619	NaN	1	0	Median	11359000	3204900	8154300	2734	452	2563	5730	12510	12510		1	9606
RISGLIYEETR	0	2	Unmodified	1335.7147	0.71466402	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	17.011	17.011	2	0.00098459	9484	DP1063-5	95.618	95.618			1.5866	1.3501	NaN	1	0	Median	36904000	15120000	21784000	2735	386	2564	5731	12511;12512	12511		2	9606
RKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	2	1	Unmodified	3338.683	0.68299332	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			20.072	20.072	4	0.0024302	13823	DP1063-3	62.284	42.023			NaN	NaN	NaN	0	0	Median	13414000	0	13414000	2736	149	2565	5732	12513	12513		1	9606
RKPDTIEVQQMK	2	1	Oxidation (M)	1487.7766	0.77661235	212;170	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	1	2	2.5	0.5		1	1			12.78	12.78	3	0.0074433	2676	DP1063-2	81.709	49.27			4.6435	4.6505	NaN	1	0	Median	14075000	1788900	12286000	2737	170;212	2566	5733;5734	12514;12515;12516	12514	216	3	9606
RKPGTLQDQHFSQANR	1	2	Unmodified	1881.9558	0.95579078	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	2	2.6	0.8		3	1	1		13.207	13.207	2;3;4	0.00033315	3097	DP1063-2	115.26	86.446			NaN	NaN	NaN	0	0	Median	335670000	0	335670000	2738	524	2567	5735;5736;5737;5738;5739	12517;12518;12519;12520;12521;12522;12523;12524;12525;12526;12527	12517		11	9606
RLDELEEATK	1	1	Unmodified	1202.6143	0.61428128	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	1	2	0		1				15.662	15.662	2	0.0039906	6231	DP1063-2	107.55	67.706			NaN	NaN	NaN	0	0	Median	8784400	0	8784400	2739	547	2568	5740	12528;12529	12528		2	9606
RLEEELR	0	2	Unmodified	943.50869	0.50869399	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			14.197	14.197	2	7.7625E-05	5742	DP1063-3	143.89	26.983			1.2868	1.1765	NaN	1	0	Median	38076000	16830000	21246000	2740	449	2569	5741	12530;12531;12532;12533	12532		4	9606
RLEYKPIK	2	1	Unmodified	1045.6284	0.6284152	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	2	2	0		1				13.641	13.641	2	0.018999	3679	DP1063-2	72.789	72.789			1.0076	1.0394	NaN	1	0	Median	10494000	4883000	5611100	2741	154	2570	5742	12534;12535;12536	12536		3	9606
RLGDSSLSR	0	2	Unmodified	989.52541	0.52540669	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	2	0		1				13.7	13.7	2	0.017774	3737	DP1063-2	60.019	9.9797			2.9447	2.7422	NaN	1	0	Median	6200800	1825400	4375400	2742	483	2571	5743	12537	12537		1	9606
RLLLEDLVK	1	1	Unmodified	1097.6808	0.6808447	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	3	1.41	1	1	1	1	1	20.047	20.047	2	0.000262	12217	DP1063-2	124.08	72.745			1.2911	1.2311	9.4578	4	0	Median	249130000	110410000	138730000	2743	460	2572	5744;5745;5746;5747;5748	12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548;12549;12550;12551;12552;12553	12544		16	9606
RLLLEDLVKK	2	1	Unmodified	1225.7758	0.77580772	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					18.442	18.442	3	0.002123	8446	DP1063-1	87.184	70.271			1.0985	1.0998	NaN	1	0	Median	6892000	3645400	3246600	2744	460	2573	5749	12554;12555	12555		2	9606
RLNISYTR	0	2	Unmodified	1021.5669	0.56687757	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0.816		1	1	1		15.16	15.16	2	2.0227E-07	5591	DP1063-2	149.57	93.026			1.4385	1.3318	0.63792	3	0	Plateau	866390000	353710000	512670000	2745	595	2574	5750;5751;5752	12556;12557;12558;12559;12560;12561;12562;12563;12564;12565	12559		10	9606
RLPDAHSDYAR	0	2	Unmodified	1299.632	0.63199703	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	3.75	0.829			2	1	1	13.635	13.635	2;3	4.4318E-05	5022	DP1063-3	119.74	105.18			1.1759	1.0736	2.4249	4	0	Median	55315000	24822000	30493000	2746	591	2575	5753;5754;5755;5756	12566;12567;12568;12569;12570;12571;12572;12573;12574;12575;12576;12577;12578;12579	12567		14	9606
RLQSIGTENTEENRR	0	3	Unmodified	1801.9031	0.90308651	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	2	4	0				1		13.439	13.439	3	0.035237	4728	DP1063-4	47.639	47.639			2.6734	2.7001	NaN	1	0	Median	19265000	4361300	14904000	2747	98	2576	5757	12580	12580		1	9606
RLSELLR	0	2	Unmodified	885.5396	0.53960019	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	2	0		1				16.093	16.093	2	0.0039889	6861	DP1063-2	119.41	32.934			2.7878	2.596	NaN	1	0	Median	41659000	9882700	31776000	2748	135	2577	5758	12581	12581		1	9606
RLTFLVAQK	1	1	Unmodified	1074.655	0.6549643	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				17.369	17.369	2	0.0027597	7069	DP1063-1	88.948	38.341			1.3764	1.29	3.8843	2	0	Median	357180000	154370000	202820000	2749	460	2578	5759;5760	12582;12583;12584;12585;12586;12587;12588;12589	12585		8	9606
RMEELHNQEVQK	1	1	Oxidation (M)	1555.7413	0.74128948	505	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	1	1	3	0			1			12.597	12.597	3	0.0017924	3832	DP1063-3	83.226	48.725			2.3424	2.1246	NaN	1	0	Median	8416200	2579000	5837200	2750	505	2579	5761	12590;12591	12591	643	2	9606
RNPDTQWITKPVHK	2	1	Unmodified	1718.9216	0.92163711	357	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	2	5	0					1	14.693	14.693	4	0.027252	6751	DP1063-5	51.092	24.968			1.1659	1.2014	NaN	1	0	Median	8345200	3103200	5242100	2751	357	2580	5762	12592	12592		1	9606
RNWNLYPACLREMSR	0	3	Oxidation (M)	1980.9411	0.94106869	611	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	1	2	3.5	0.5			1	1		21.192	21.192	2	0.010903	14993	DP1063-3	51.762	51.762			6.6357	6.6714	24.846	2	0	Median	327360000	38240000	289120000	2752	611	2581	5763;5764	12593;12594;12595	12593	739	3	9606
RPAEDMEEEQAFKR	1	2	Oxidation (M)	1750.7944	0.79444726	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3	0			1			14.043	14.043	3	0.00016518	5569	DP1063-3	113.43	113.43			2.3033	2.5445	NaN	1	0	Median	24055000	6016000	18039000	2753	362	2582	5765	12596;12597;12598;12599	12598	459	4	9606
RPAEDMEEEQAFKR	1	2	Unmodified	1734.7995	0.79953264	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	2	3	0			1			14.925	14.925	3	0.00021661	6709	DP1063-3	152.11	152.11			2.2126	2.4443	NaN	1	0	Median	17178000	5964800	11213000	2754	362	2582	5766	12600;12601	12600		2	9606
RPCFSALTPDETYVPK	1	1	Unmodified	1879.9138	0.91383411	14	CON__P02769			yes	yes	0	0	1	2.8	1.25	2	2	3	2	1	19.131	19.131	2;3	5.9047E-07	10147	DP1063-2	172.33	123.82		+	NaN	NaN	NaN	0	0	Median	1800599999.9999998	1800599999.9999998	0	2755	14	2583	5767;5768;5769;5770;5771;5772;5773;5774;5775;5776	12602;12603;12604;12605;12606;12607;12608;12609;12610;12611;12612;12613;12614;12615;12616;12617;12618;12619;12620;12621	12608		20	9606
RPDQQLQGEGK	1	1	Unmodified	1254.6317	0.63166267	555	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	3.33	0.471			2	1		12.787	12.787	2;3	7.2706E-08	4053	DP1063-3	177.57	133.92			2.3624	2.1427	0.55159	2	0	Median	22472000	6735000	15737000	2756	555	2584	5777;5778;5779	12622;12623;12624;12625;12626;12627;12628;12629;12630	12628		9	9606
RPELLTHSTTEVTQPR	0	2	Unmodified	1863.9803	0.9802742	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		5				15.36	15.36	2;3;4	8.0611E-16	5851	DP1063-2	186.13	155.24			0.81554	0.75945	7.1481	2	0	Median	92469000	51464000	41004000	2757	418	2585	5780;5781;5782;5783;5784	12631;12632;12633;12634;12635;12636;12637;12638;12639;12640	12640		10	9606
RPFLEPK	1	1	Unmodified	885.50724	0.50723743	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				14.812	14.812	2	0.0047893	5126	DP1063-2	116.88	45.169			0.77981	0.73461	NaN	1	0	Median	28774000	15982000	12792000	2758	418	2586	5785	12641;12642;12643	12642		3	9606
RPGAALDPGCVLAK	1	1	Unmodified	1423.7606	0.76056836	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.4	0.49	3	2				17.167	17.167	2;3	0.0019477	6668	DP1063-1	75.911	75.911			1.0803	1.0073	4.3404	5	0	Median	672730000	315760000	356970000	2759	460	2587	5786;5787;5788;5789;5790	12644;12645;12646;12647;12648;12649;12650;12651;12652;12653;12654;12655	12651		12	9606
RPGAVLEAGCVVAR	0	2	Unmodified	1453.7824	0.78236643	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.413	16.413	3	0.00058457	6139	DP1063-1	94.673	94.673			1.1951	1.0985	NaN	1	0	Median	11695000	5761000	5934300	2760	43	2588	5791	12656;12657	12657		2	9606
RPGEEGTVMSLAGK	1	1	Oxidation (M)	1446.7137	0.71367774	90	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	1	1	4	0				1		14.862	14.862	3	0.010883	6370	DP1063-4	54.402	36.617			1.2968	1.2608	NaN	1	0	Median	10352000	4571200	5780300	2761	90	2589	5792	12658;12659;12660	12658	66	3	9606
RPILTIITLEDSSGNLLGR	0	2	Unmodified	2067.1688	0.16880325	103	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	1	4	0				1		22.243	22.243	3	4.1193E-05	16068	DP1063-4	93.215	77.774			1.6533	1.4825	NaN	1	0	Median	5645200	2087700	3557600	2762	103	2590	5793	12661	12661		1	9606
RPIVGLGGGK	1	1	Unmodified	952.5818	0.58179936	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	1	4	0				1		14.514	14.514	2	0.00013043	5916	DP1063-4	118.74	49.567			0.97298	0.94598	NaN	1	0	Median	20863000	10568000	10296000	2763	477	2591	5794	12662;12663;12664;12665	12663		4	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Oxidation (M)	3238.5174	0.51738456	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	4	0				2		15.402	15.402	3;4	3.998E-17	7056	DP1063-4	115.79	115.79			1.1874	1.1993	4.9306	2	0	Median	57708000	24455000	33253000	2764	410	2592	5795;5796	12666;12667;12668;12669;12670;12671;12672;12673;12674;12675;12676;12677	12668	502	12	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	0	3	Unmodified	3222.5225	0.52246994	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	2	4	0				1		16.154	16.154	4	2.4174E-14	8217	DP1063-4	99.064	99.064			1.023	1.0332	NaN	1	0	Median	13744000	4441000	9303000	2765	410	2592	5797	12678;12679;12680;12681;12682	12682		5	9606
RPSTYGIPR	0	2	Unmodified	1045.5669	0.56687757	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				14.7	14.7	2	0.013111	4936	DP1063-2	63.426	31.492			0.78988	0.73555	NaN	1	0	Median	31463000	17469000	13994000	2766	418	2593	5798	12683;12684;12685;12686	12684		4	9606
RPTPQDSPIFLPVDDTSFR	0	2	Unmodified	2187.096	0.096032235	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1.5	0.5	1	1				20.806	20.806	2	0.00038191	11362	DP1063-1	121.79	83.589			NaN	NaN	NaN	0	0	Median	10348000	0	10348000	2767	303	2594	5799;5800	12687;12688;12689	12687		3	9606
RQQEQQVPILEK	1	1	Unmodified	1494.8154	0.8154407	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	0	1					15.81	15.81	3	0.017942	5455	DP1063-1	49.356	49.356			2.1875	2.0396	NaN	1	0	Median	9924200	2958000	6966200	2768	303	2595	5801	12690;12691	12691		2	9606
RQQQAATSESSQSEASVR	0	2	Unmodified	1948.9199	0.91985878	544	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	1	0	1					12.805	12.805	3	0.0012541	2096	DP1063-1	129.88	93.284			NaN	NaN	NaN	0	0	Median	0	0	0	2769	544	2596	5802	12692	12692		1	9606
RTALLGGGQR	0	2	Unmodified	1027.5887	0.58867565	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			13.744	13.744	2	0.0046322	5216	DP1063-3	71.451	29.163			1.3449	1.2296	NaN	1	0	Median	14272000	6389000	7883100	2770	111	2597	5803	12693;12694	12694		2	9606
RTAQEVETYRR	0	3	Unmodified	1407.7219	0.72187466	178	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	2	3	0			1			12.868	12.868	3	0.00061951	4153	DP1063-3	103.43	71.104			2.1308	2.1324	NaN	1	0	Median	8979800	2393200	6586600	2771	178	2598	5804	12695;12696	12696		2	9606
RTDIFGVEETAIGK	1	1	Unmodified	1534.7991	0.79912193	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				19.229	19.229	3	0.0043846	11126	DP1063-2	64.476	44.352			1.1443	1.078	NaN	1	0	Median	15169000	6367700	8801000	2772	513	2599	5805	12697;12698;12699;12700;12701	12700		5	9606
RTEEGPTLSYGR	0	2	Unmodified	1364.6684	0.66844211	281	P43243	MATR3	Matrin-3	yes	yes	0	0	1	2	0		2				15.141	15.141	2	0.029318	5624	DP1063-2	90.827	48.951			NaN	NaN	NaN	0	0	Median	0	0	0	2773	281	2600	5806;5807	12702;12703	12703		2	9606
RTPMCAHCNQVIR	0	2	Oxidation (M)	1657.7599	0.75993321	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	1	1	3	0			1			12.674	12.674	3	0.038025	3956	DP1063-3	59.57	19.941			NaN	NaN	NaN	0	0	Median	1712200	0	1712200	2774	582	2601	5808	12704	12704	701	1	9606
RVDPVYIHLAER	0	2	Unmodified	1466.7994	0.7993967	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	1.36	8	2	1	2	1	18.095	18.095	2;3	1.0662E-05	6633	DP1063-1	158.34	118.79			1.1846	1.0805	49.984	10	0	Median	1147100000	515880000	631170000	2775	460	2602	5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822	12705;12706;12707;12708;12709;12710;12711;12712;12713;12714;12715;12716;12717;12718;12719;12720;12721;12722;12723;12724;12725;12726;12727;12728;12729;12730;12731;12732;12733;12734;12735;12736;12737;12738;12739;12740;12741;12742;12743;12744;12745	12715		41	9606
RVEEDIQQQK	1	1	Unmodified	1271.647	0.64697839	173	P15924	DSP	Desmoplakin	yes	yes	0	0	1	1	0	1					13.069	13.069	2	0.001193	2402	DP1063-1	93.551	34.875			1.9353	1.8044	NaN	1	0	Median	565620	204320	361300	2776	173	2603	5823	12746;12747	12746		2	9606
RVEGPGSLGLEESGSR	0	2	Unmodified	1628.8118	0.81181188	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		16.23	16.23	3	0.0023592	8256	DP1063-4	96.773	41.597			NaN	NaN	NaN	0	0	Median	5795400	0	5795400	2777	458	2604	5824	12748;12749	12749		2	9606
RVEIMEEESEQ	0	1	Oxidation (M)	1393.6031	0.60312424	334	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	1	1	3	0			1			14.921	14.921	2	0.044858	6715	DP1063-3	68.626	15.537			NaN	NaN	NaN	0	0	Median	0	0	0	2778	334	2605	5825	12750	12750	427	1	9606
RVLQALEGLK	1	1	Unmodified	1125.687	0.68699271	265	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	1	5	0					1	17.604	17.604	2	0.00065338	10270	DP1063-5	99.688	63.263			2.0948	1.786	NaN	1	0	Median	18145000	5725300	12420000	2779	265	2606	5826	12751;12752;12753	12751		3	9606
RVPPPALSR	0	2	Unmodified	991.5927	0.59269839	483	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	1	0	1					13.727	13.727	2	0.052238	3106	DP1063-1	51.193	51.193			1.7954	1.6502	NaN	1	0	Median	1481700	517460	964250	2780	483	2607	5827	12754	12754		0	9606
RVSALNSVHCEHVEDEGESR	0	2	Unmodified	2309.0455	0.045470003	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	2	2				14.438	14.438	3;4	3.4808E-08	3922	DP1063-1	166.3	142.77			1.2974	1.1925	13.591	3	0	Median	66734000	27258000	39476000	2781	460	2608	5828;5829;5830;5831	12755;12756;12757;12758;12759;12760;12761;12762;12763;12764;12765;12766;12767	12757		13	9606
RWFVEVEGTVK	1	1	Unmodified	1348.7139	0.71393574	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	4	0				1		18.597	18.597	2	0.0044919	11347	DP1063-4	105.98	46.994			NaN	NaN	NaN	0	0	Median	2759700	0	2759700	2782	460	2609	5832	12768	12768		1	9606
RYDDPEVQK	1	1	Unmodified	1148.5462	0.54620171	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	3	0			1			13.292	13.292	2	0.0031011	4630	DP1063-3	86.136	53.295			1.389	1.2598	NaN	1	0	Median	19770000	7933300	11837000	2783	263	2610	5833	12769;12770	12769		2	9606
RYDDPEVQKDIK	2	1	Unmodified	1504.7522	0.75217174	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	2	3	0			1			14.337	14.337	3	0.0053314	5931	DP1063-3	84.734	84.734			1.2476	1.2495	NaN	1	0	Median	12605000	5546300	7058400	2784	263	2611	5834	12771;12772	12772		2	9606
RYPTVHEIEVIGGYLALQK	1	1	Unmodified	2185.1895	0.18953869	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.67	0.745		3	2	1		21.549	21.549	2;3;4	8.5087E-05	15720	DP1063-3	129.42	87.161			NaN	NaN	NaN	0	0	Median	187400000	0	187400000	2785	524	2612	5835;5836;5837;5838;5839;5840	12773;12774;12775;12776;12777;12778;12779;12780;12781;12782;12783;12784	12781		12	9606
SAAQAAAQTNSNAAGK	1	0	Unmodified	1459.7015	0.70153315	555	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	3	0			1			12.664	12.664	2	1.1532999999999998E-21	3905	DP1063-3	221.09	221.09			2.8555	2.2929	NaN	1	0	Median	12799000	3489000	9310000	2786	555	2613	5841	12785;12786	12786		2	9606
SAATSGAGSTTSGVVSGSLGSR	0	1	Unmodified	1895.9185	0.9184618	544	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	0	2					16.424	16.424	2	6.0151E-06	6113	DP1063-1	168.1	119.59			NaN	NaN	NaN	0	0	Median	2920100	0	2920100	2787	544	2614	5842;5843	12787;12788;12789	12787		3	9606
SADGSAPAGEGEGVTLQR	0	1	Unmodified	1700.7966	0.79655575	432	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	2.25	1.09	1	2		1		16.081	16.081	2	2.064E-05	7979	DP1063-4	159.66	127.16			2.128	1.5014	10.164	2	0	Median	13248000	4478500	8769900	2788	432	2615	5844;5845;5846;5847	12790;12791;12792;12793;12794;12795;12796;12797;12798	12798		9	9606
SADTLWDIQK	1	0	Unmodified	1175.5823	0.58225287	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		19.502	19.502	2	0.00014047	12543	DP1063-4	151.44	96.071			NaN	NaN	NaN	0	0	Median	10812000	0	10812000	2789	127	2616	5848	12799;12800;12801	12800		3	9606
SADTLWGIQK	1	0	Unmodified	1117.5768	0.57677356	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		19.064	19.064	2	0.00061318	11993	DP1063-4	128.69	88.619			NaN	NaN	NaN	0	0	Median	7403500	0	7403500	2790	91	2617	5849	12802;12803	12802		2	9606
SAEEGELAESK	1	0	Unmodified	1148.5197	0.51971219	614	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	2	0		1				13.997	13.997	2	0.046019	4129	DP1063-2	74.165	35.411			NaN	NaN	NaN	0	0	Median	3102600	0	3102600	2791	614	2618	5850	12804	12804		1	9606
SAEFLLHMLK	1	0	Oxidation (M)	1203.6322	0.63217995	184	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	0	5	0					1	18.278	18.278	2	0.005621	11124	DP1063-5	104.44	78.053			NaN	NaN	NaN	0	0	Median	5363600	0	5363600	2792	184	2619	5851	12805;12806	12806	235	2	9606
SAEIDSDDTGGSAAQK	1	0	Unmodified	1550.6696	0.6696239	243	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	2	0		2				13.781	13.781	2	0.00058053	3832	DP1063-2	136.53	95.816			NaN	NaN	NaN	0	0	Median	3077100	0	3077100	2793	243	2620	5852;5853	12807;12808;12809	12807		3	9606
SAFEKPQIIAHIQK	2	0	Acetyl (Protein N-term)	1650.9093	0.90934108	588	Q96MX6	WDR92	WD repeat-containing protein 92	yes	yes	1	0	1	4	0				1		18.329	18.329	3	0.051668	10965	DP1063-4	41.825	20.066			NaN	NaN	NaN	0	0	Median	4192800	0	4192800	2794	588	2621	5854	12810	12810		1	9606
SAGQGEVLVYVEDPAGHQEEAK	1	0	Unmodified	2312.0921	0.092069069	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	2					18.459	18.459	2;3	8.0086E-05	8428	DP1063-1	135.23	93.044			NaN	NaN	NaN	0	0	Median	11345000	0	11345000	2795	190	2622	5855;5856	12811;12812;12813	12813		3	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term);Oxidation (M)	1283.6445	0.64447597	290	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	1	0	5	0					1	19.15	19.15	2	0.00015821	12239	DP1063-5	112.11	112.11			2.5932	1.9367	NaN	1	0	Median	63983000	16328000	47655000	2796	290	2623	5857	12814;12815	12815	346	2	9606
SAHLQWMVVR	0	1	Acetyl (Protein N-term)	1267.6496	0.64956134	290	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	5	0					1	20.621	20.621	2	0.0016279	14140	DP1063-5	116.52	64.263			2.1128	1.578	NaN	1	0	Median	14557000	4124400	10433000	2797	290	2623	5858	12816;12817;12818	12816		3	9606
SAINEVVTR	0	1	Unmodified	987.53491	0.53490874	396	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	15.893	15.893	2	9.3747E-05	8112	DP1063-5	135.71	56.941			2.2196	1.6577	NaN	1	0	Median	48186000	16009000	32178000	2798	396	2624	5859	12819;12820;12821;12822	12819		4	9606
SALLALGLK	1	0	Unmodified	884.5695	0.56950333	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			1			20.182	20.182	2	0.023737	13932	DP1063-3	77.923	41.737			1.3409	1.0767	NaN	1	0	Median	32405000	13844000	18561000	2799	456	2625	5860	12823;12824;12825;12826	12824		4	9606
SALSGHLETVILGLLK	1	0	Unmodified	1649.9716	0.97160699	128	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	4	0				1		24.112	24.112	3	0.00037012	18198	DP1063-4	101.2	83.34			1.1718	0.81111	NaN	1	0	Median	3347200	1359800	1987400	2800	128	2626	5861	12827;12828	12827		2	9606
SAMPFTASPASSTTAR	0	1	Oxidation (M)	1597.7406	0.74062078	35	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	1	0	4	0				1		15.912	15.912	2	0.0055956	7770	DP1063-4	105.36	72.944			NaN	NaN	NaN	0	0	Median	4366100	0	4366100	2801	35	2627	5862	12829	12829	27	1	9606
SANVNEFPVLK	1	0	Unmodified	1216.6452	0.64518747	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				18.858	18.858	2	0.017272	10529	DP1063-2	75.294	56.514			1.7016	1.4236	NaN	1	0	Median	10633000	4326700	6306700	2802	336	2628	5863	12830	12830		1	9606
SAQGSSSPVPSMVQK	1	0	Oxidation (M)	1504.7192	0.71915705	256	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	1	0	1	0	1					14.413	14.413	2	0.0017538	3868	DP1063-1	93.011	68.156			1.5466	1.287	NaN	1	0	Median	2611900	935530	1676400	2803	256	2629	5864	12831;12832;12833	12832	306	3	9606
SAQSLEYCAELLGLDQDDLR	0	1	Unmodified	2295.0689	0.068890786	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				22.784	22.784	2	8.8203E-63	15747	DP1063-2	278.33	220.15			NaN	NaN	NaN	0	0	Median	8207100	0	8207100	2804	654	2630	5865	12834;12835	12835		2	9606
SASSLLEQRPK	1	1	Acetyl (Protein N-term)	1256.6725	0.67246486	676	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	1	0	1	3	0			1			17.705	17.705	2	7.1148E-05	10502	DP1063-3	142.36	91.557			3.3461	3.0349	NaN	1	0	Median	11887000	2431500	9455500	2805	676	2631	5866	12836	12836		1	9606
SAVEDEGLK	1	0	Unmodified	946.46074	0.46074075	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			14.427	14.427	2	0.0032178	6011	DP1063-3	113.71	81.772			2.9436	2.3637	NaN	1	0	Median	174790000	43648000	131150000	2806	149	2632	5867	12837;12838;12839;12840	12839		4	9606
SAVGFDYQGK	1	0	Unmodified	1070.5033	0.50327426	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	3	0.816		1	1	1		16.834	16.834	2	0.0078179	9302	DP1063-3	98.033	70.903			NaN	NaN	NaN	0	0	Median	39183000	0	39183000	2807	488	2633	5868;5869;5870	12841;12842;12843;12844;12845;12846	12844		6	9606
SAVGFEYQGK	1	0	Unmodified	1084.5189	0.51892433	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	2	0		1				16.648	16.648	2	0.0042805	7548	DP1063-2	102.07	77.846			NaN	NaN	NaN	0	0	Median	17343000	0	17343000	2808	488	2634	5871	12847	12847		1	9606
SAYDSTMETMNYAQIR	0	1	2 Oxidation (M)	1911.7979	0.79787766	330	P53396	ACLY	ATP-citrate synthase	yes	yes	0	2	0	2	0		1				17.218	17.218	2	0.00026743	8316	DP1063-2	93.623	84.434			2.2295	1.623	NaN	1	0	Median	12700000	3585800	9113900	2809	330	2635	5872	12848;12849	12848	423;424	2	9606
SCIMLGRMPNLMLMAK	1	1	4 Oxidation (M)	1928.9014	0.90143699	275	P42336	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform	yes	yes	0	4	1	1	0	1					29.276	29.276	2	0.044654	19431	DP1063-1	48.741	12.457			NaN	NaN	NaN	0	0	Median	0	0	0	2810	275	2636	5873	12850	12850	330;331;332;333	1	9606
SCSGVEFSTSGHAYTDTGK	1	0	Unmodified	1989.8374	0.83743429	664	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	4	0				1		16.055	16.055	3	0.012318	7996	DP1063-4	78.441	38.932			NaN	NaN	NaN	0	0	Median	2191800	0	2191800	2811	664	2637	5874	12851;12852	12851		2	9606
SCSGVEFSTSGSSNTDTGK	1	0	Unmodified	1906.7851	0.78506437	283	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				2		15.747	15.747	2	4.6644000000000004E-24	7577	DP1063-4	212.17	201.06			4.5338	3.1382	NaN	1	0	Median	6896000	1668300	5227600	2812	283	2638	5875;5876	12853;12854;12855;12856	12854		4	9606
SDAGLESDTAMK	1	0	Oxidation (M)	1239.5289	0.52889667	629	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	1	0	2	0		1				13.981	13.981	2	0.016684	4089	DP1063-2	87.149	50.964			NaN	NaN	NaN	0	0	Median	3840800	0	3840800	2813	629	2639	5877	12857	12857	757	1	9606
SDEAVKPFGLK	2	0	Unmodified	1189.6343	0.63428844	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1.33	0.471	2	1				16.697	16.697	2;3	1.7265E-05	6369	DP1063-1	134.23	97.781			1.4149	1.4219	NaN	1	0	Median	27845000	4690600	23155000	2814	303	2640	5878;5879;5880	12858;12859;12860;12861;12862;12863	12859		6	9606
SDIGEVILVGGMTR	0	1	Oxidation (M)	1461.7497	0.7497289	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	3	0			1			20.09	20.09	2	0.0055486	13921	DP1063-3	80.737	49.451			1.4579	1.057	NaN	1	0	Median	21142000	8069500	13072000	2815	263	2641	5881	12864;12865	12864	318	2	9606
SDLEMQYETLQEELMALK	1	0	2 Oxidation (M)	2202.0072	0.0072017319	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	0	3	0			1			24.178	24.178	2	7.2629E-37	19005	DP1063-3	252.14	205.76		+	NaN	NaN	NaN	0	0	Median	12211000	12211000	0	2816	251	2642	5882	12866;12867	12866	291;292	2	9606
SDLEMQYETLQEELMALKK	2	0	Oxidation (M)	2314.1073	0.10725013	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	3	0			1			22.56	22.56	3	0.0022521	17067	DP1063-3	97.352	60.269		+	NaN	NaN	NaN	0	0	Median	4701100	4701100	0	2817	251	2643	5883	12868	12868	291;292	1	9606
SDMNTVLNYIFSHAQVTK	1	0	Oxidation (M)	2083.0044	0.004440036	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	2	2				22.47	22.47	2;3	3.0144999999999996E-44	13305	DP1063-1	242.91	212.03			1.4215	1.2563	29.843	3	0	Plateau	98542000	42916000	55626000	2818	460	2644	5884;5885;5886;5887	12869;12870;12871;12872;12873;12874;12875	12871	565	7	9606
SDSEKLNLDSIIGR	1	1	Acetyl (Protein N-term)	1587.8104	0.8104149	365	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	1	0	1	4.17	0.373				5	1	21.35	21.35	2;3	3.2577999999999998E-87	14953	DP1063-4	313.52	256.18			NaN	NaN	NaN	0	0	Median	128140000	0	128140000	2819	365	2645	5888;5889;5890;5891;5892;5893	12876;12877;12878;12879;12880;12881;12882;12883;12884	12877		9	9606
SDTNNSGPEINK	1	0	Unmodified	1274.5739	0.57387302	277	P42694	HELZ	Probable helicase with zinc finger domain	yes	yes	0	0	0	1	0	1					13.35	13.35	2	0.041133	2751	DP1063-1	76.282	29.892			NaN	NaN	NaN	0	0	Median	378300	0	378300	2820	277	2646	5894	12885	12885		1	9606
SDVEAIFSK	1	0	Unmodified	994.49713	0.49712625	133	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		18.663	18.663	2	4.0368E-05	11400	DP1063-4	141.52	113.35			1.9613	1.3576	NaN	1	0	Median	9244700	2563700	6681000	2821	133	2647	5895	12886;12887;12888;12889	12887		4	9606
SEDDESGAGELTR	0	1	Unmodified	1364.5692	0.56918158	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				15.042	15.042	2	0.0033132	5490	DP1063-2	100.72	56.413			NaN	NaN	NaN	0	0	Median	3984200	0	3984200	2822	246	2648	5896	12890;12891	12891		2	9606
SEDGVEGDLGETQSR	0	1	Unmodified	1577.6805	0.68052294	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	0	1					16.247	16.247	2	0.017794	5956	DP1063-1	83.182	43.397			NaN	NaN	NaN	0	0	Median	0	0	0	2823	455	2649	5897	12892	12892		1	9606
SEGFDTYR	0	1	Unmodified	973.41412	0.4141249	157	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				1		16.064	16.064	2	8.3012E-07	8022	DP1063-4	151.27	108.15			2.1402	1.4265	NaN	1	0	Median	17122000	4882800	12239000	2824	157	2650	5898	12893;12894;12895;12896	12894		4	9606
SEGSSCALESPGSVPVGICHGSLGEPQGNQGK	1	0	Unmodified	3181.4404	0.44043937	28	CON__Q58D62			yes	yes	0	0	0	3	0			1			18.192	18.192	3	1.1583E-05	11216	DP1063-3	83.216	66.002		+	NaN	NaN	NaN	0	0	Median	6903600	6903600	0	2825	28	2651	5899	12897	12897		1	
SEGVVAVLLTK	1	0	Unmodified	1114.6598	0.6597749	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				20.655	20.655	2	0.00027189	13003	DP1063-2	126.39	99.498			2.5619	2.0938	13.135	2	0	Median	23540000	7016600	16524000	2826	303	2652	5900;5901	12898;12899;12900	12900		3	9606
SEITELRR	0	2	Unmodified	1002.5458	0.54580778	19	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.67	1.25	1		1	1		14.59	14.59	2	0.024259	4120	DP1063-1	95.352	42.95		+	NaN	NaN	NaN	0	0	Median	77373000	77373000	0	2827	19	2653	5902;5903;5904	12901;12902;12903;12904;12905	12902		5	9606
SELHIENLNMEADPGQYR	0	1	Oxidation (M)	2130.964	0.96403178	254	P35613	BSG	Basigin	yes	yes	0	1	0	4	0				1		18.001	18.001	3	0.024887	10475	DP1063-4	69.737	44.944			NaN	NaN	NaN	0	0	Median	3507600	0	3507600	2828	254	2654	5905	12906	12906	304	1	9606
SELPLDPLPVPTEEGNPLLK	1	0	Unmodified	2157.1569	0.15690116	515	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	3	0			1			23.191	23.191	2	0.0086706	17835	DP1063-3	94.717	53.316			NaN	NaN	NaN	0	0	Median	0	0	0	2829	515	2655	5906	12907	12907		1	9606
SEMEVQDAELK	1	0	Oxidation (M)	1293.5758	0.57584686	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	1	0	4	0				1		15.252	15.252	2	0.013585	6897	DP1063-4	91.658	59.898			NaN	NaN	NaN	0	0	Median	1581500	0	1581500	2830	659	2656	5907	12908	12908	769	1	9606
SENGLEFTSSGSANTETTK	1	0	Unmodified	1958.8705	0.87050855	191	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	4	0				2		16.84	16.84	2	5.085E-07	8915	DP1063-4	164.92	127.31			NaN	NaN	NaN	0	0	Median	0	0	0	2831	191	2657	5908;5909	12909;12910	12909		2	9606
SEQDQAENEGEDSAVLMER	0	1	Oxidation (M)	2151.8862	0.88623497	5	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	1	0	2	0		1				16.756	16.756	2	0.00047807	7682	DP1063-2	137.21	109.24			NaN	NaN	NaN	0	0	Median	6572700	0	6572700	2832	5	2658	5910	12911;12912;12913	12911	4	3	9606
SEQEFQEQLESAR	0	1	Unmodified	1579.7114	0.71142914	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.47	0.957	1	9	3	1	1	18.017	18.017	2;3	2.2195E-80	10800	DP1063-3	302.09	271.83			1.5317	1.466	15.294	6	0	Linear	1453600000	555140000	898420000	2833	595	2659	5911;5912;5913;5914;5915;5916;5917;5918;5919;5920;5921;5922;5923;5924;5925	12914;12915;12916;12917;12918;12919;12920;12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931;12932;12933;12934;12935;12936;12937;12938;12939;12940;12941;12942	12931		29	9606
SEQEFQEQLESARR	0	2	Unmodified	1735.8125	0.81254017	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3.43	1.18		2	2	1	2	16.919	16.919	2;3	9.5761E-40	7927	DP1063-2	251.34	251.34			1.71	1.5333	15.846	5	0	Median	231670000	82148000	149520000	2834	595	2660	5926;5927;5928;5929;5930;5931;5932	12943;12944;12945;12946;12947;12948;12949;12950;12951;12952;12953;12954;12955;12956;12957	12944		15	9606
SESPKEPEQLR	1	1	Unmodified	1298.6466	0.64664404	141	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				1		13.776	13.776	3	1.7458E-06	5017	DP1063-4	154.15	154.15			2.0728	2.0152	NaN	1	0	Median	13636000	5001400	8634600	2835	141	2661	5933	12958;12959;12960;12961;12962	12959		5	9606
SESPKEPEQLRK	2	1	Unmodified	1426.7416	0.74160705	141	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	2	4	0				1		12.891	12.891	3	0.00024325	4103	DP1063-4	113.38	58.118			1.9468	2.0129	NaN	1	0	Median	5755700	2271800	3483900	2836	141	2662	5934	12963;12964;12965;12966	12964		4	9606
SETAPAAPAAAPPAEK	1	0	Acetyl (Protein N-term)	1519.7518	0.75183739	175	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	4	0				1		16.52	16.52	2	0.002908	8445	DP1063-4	106.26	15.561			1.058	0.73232	NaN	1	0	Median	61071000	27691000	33379000	2837	175	2663	5935	12967;12968;12969;12970;12971	12967		5	9606
SETAPAAPAAAPPAEKAPVK	2	0	Acetyl (Protein N-term)	1915.0051	0.005091963	175	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	1	4	0				1		16.041	16.041	2	0.00065359	7941	DP1063-4	132.51	132.51			0.85913	0.89223	NaN	1	0	Median	9967100	5554300	4412700	2838	175	2664	5936	12972;12973;12974;12975	12972		4	9606
SETELKDTYAR	1	1	Unmodified	1311.6307	0.63065962	464	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	2	0		1				14.566	14.566	3	0.0051526	4838	DP1063-2	81.017	46.296			1.8955	1.7856	NaN	1	0	Median	11539000	3667200	7871300	2839	464	2665	5937	12976;12977	12976		2	9606
SEVATLTAAGK	1	0	Unmodified	1046.5608	0.56078914	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		15.695	15.695	2	0.00067638	7547	DP1063-4	120.31	88.776			1.4392	0.99619	NaN	1	0	Median	15669000	5817700	9851100	2840	258	2666	5938	12978;12979	12978		2	9606
SFAGAVSPQEEEEFRR	0	2	Unmodified	1837.8595	0.85949036	245	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	2	0		1				17.449	17.449	3	0.00017999	8660	DP1063-2	83.087	47.278			2.5006	2.3286	NaN	1	0	Median	9705300	2769200	6936100	2841	245	2667	5939	12980	12980		1	9606
SFEVEEVETPNSTPPR	0	1	Unmodified	1816.8479	0.84792262	645	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	3	0			2			18.221	18.221	2	0.0033822	11212	DP1063-3	120.57	78.869			NaN	NaN	NaN	0	0	Median	0	0	0	2842	645	2668	5940;5941	12981;12982	12982		2	9606
SFGLPSIGR	0	1	Unmodified	932.50797	0.50796571	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			19.824	19.824	2	0.020485	11846	DP1063-2	80.165	16.747			1.2408	1.0143	15.721	2	0	Median	255210000	112220000	143000000	2843	110	2669	5942;5943	12983;12984;12985;12986;12987	12985		5	9606
SFGVQPCVSTVLVEPAR	0	1	Unmodified	1844.9455	0.94546859	557	Q8TB52	FBXO30	F-box only protein 30	yes	yes	0	0	0	2	0		1				20.464	20.464	2	0.01128	12747	DP1063-2	88.101	52.423			NaN	NaN	NaN	0	0	Median	0	0	0	2844	557	2670	5944	12988	12988		1	9606
SFITTDVNPYYDSFVR	0	1	Unmodified	1922.905	0.90504357	640	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				22.346	22.346	2	0.010355	15204	DP1063-2	94.122	50.619			NaN	NaN	NaN	0	0	Median	4403400	0	4403400	2845	640	2671	5945	12989	12989		1	9606
SFLDDPIWR	0	1	Unmodified	1147.5662	0.56620887	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				22.486	22.486	2	0.023737	15433	DP1063-2	77.923	46.393			1.2728	0.9439	NaN	1	0	Median	8660800	3940500	4720300	2846	543	2672	5946	12990;12991;12992;12993	12992		4	9606
SFLLDLLNATGK	1	0	Unmodified	1290.7184	0.71835242	42	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			2			24.685	24.685	2	0.00057854	19622	DP1063-3	128.03	104.89			3.4513	2.7714	NaN	1	0	Median	7827900	1315800	6512100	2847	42	2673	5947;5948	12994;12995;12996	12994		3	9606
SFLSQGQVLK	1	0	Unmodified	1105.6132	0.61315906	300	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	5	0					1	18.34	18.34	2	0.0099381	11215	DP1063-5	84.743	55.825			1.4389	1.218	NaN	1	0	Median	7309300	3274300	4035000	2848	300	2674	5949	12997	12997		1	9606
SFNDDAMLIEK	1	0	Oxidation (M)	1297.586	0.58601761	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		18.098	18.098	2	0.0012555	9531	DP1063-2	105.4	70.219			1.568	1.2966	5.5211	3	0	Plateau	228070000	91673000	136400000	2849	595	2675	5950;5951;5952	12998;12999;13000;13001;13002;13003;13004	12999	716	7	9606
SFNDDAMLIEK	1	0	Unmodified	1281.5911	0.59110299	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			19.26	19.26	2	0.0067471	12609	DP1063-3	91.584	62.111			1.6854	1.3814	1.9431	2	0	Median	51804000	16305000	35499000	2850	595	2675	5953;5954	13005;13006;13007;13008;13009;13010;13011	13008		7	9606
SFQPDTGR	0	1	Unmodified	906.41954	0.41954463	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.221	14.221	2	0.0029034	5757	DP1063-3	125.81	91.811			1.29	1.0646	18.802	4	0	Median	821060000	347900000	473170000	2851	154	2676	5955;5956;5957;5958	13012;13013;13014;13015;13016;13017;13018;13019;13020;13021;13022;13023	13019		12	9606
SFQPDTGRIEVFR	0	2	Unmodified	1550.7841	0.78414057	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				18.472	18.472	2;3	0.00098905	10009	DP1063-2	98.407	70.998			1.2783	1.1904	14.193	2	0	Median	155620000	67738000	87884000	2852	154	2677	5959;5960	13024;13025;13026;13027;13028;13029	13025		6	9606
SFYGSTLFLCR	0	1	Unmodified	1349.6438	0.64380726	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					21.648	21.648	2	0.0027426	12352	DP1063-1	102.07	65.672			2.5864	2.0195	NaN	1	0	Median	9685100	3081000	6604000	2853	303	2678	5961	13030;13031;13032	13031		3	9606
SFYPEEVSSMVLTK	1	0	Oxidation (M)	1631.7753	0.77527495	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			19.952	19.952	2	0.017889	13528	DP1063-3	64.121	64.121			3.3124	2.6599	NaN	1	0	Median	33327000	10336000	22990000	2854	153	2679	5962	13033;13034	13033	172	2	9606
SGAQASSTPLSPTR	0	1	Unmodified	1358.679	0.6790068	97	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	3	0			1			14.797	14.797	2	0.0087513	6581	DP1063-3	92.866	48.489			NaN	NaN	NaN	0	0	Median	3852900	0	3852900	2855	97	2680	5963	13035;13036	13035		2	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	1	1	2 Oxidation (M)	3026.3824	0.38237913	412	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	2	1	4	0				1		20.167	20.167	3	1.8355E-05	13487	DP1063-4	103.75	90.34			NaN	NaN	NaN	0	0	Median	9107400	0	9107400	2856	412	2681	5964	13037;13038;13039	13039	504;505	3	9606
SGDGEGTPVEHVR	0	1	Unmodified	1338.6164	0.61640654	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				13.539	13.539	3	0.0028888	3504	DP1063-2	77.185	77.185			1.0574	0.77266	NaN	1	0	Median	10312000	5324400	4987800	2857	543	2682	5965	13040;13041;13042;13043	13041		4	9606
SGDSEVYQLGDVSQK	1	0	Unmodified	1610.7424	0.74239491	444	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	5	0					1	17.874	17.874	2	0.0012431	10571	DP1063-5	117.95	75.6			NaN	NaN	NaN	0	0	Median	5483900	0	5483900	2858	444	2683	5966	13044;13045	13044		2	9606
SGEDEQQEQTIAEDLVVTK	1	0	Acetyl (Protein N-term)	2160.007	0.007002036	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	1	0	0	4	0				2		22.144	22.144	2	1.9088E-10	15912	DP1063-4	179.56	155.06			2.3255	1.6097	NaN	1	0	Median	6744300	2206100	4538200	2859	659	2684	5967;5968	13046;13047;13048;13049	13047		4	9606
SGEGEVSGLMR	0	1	Oxidation (M)	1136.5132	0.51318702	466	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	0	2	0		1				15.055	15.055	2	0.046207	5495	DP1063-2	78.939	48.863			NaN	NaN	NaN	0	0	Median	9753500	0	9753500	2860	466	2685	5969	13050	13050	610	1	9606
SGEVLVNVK	1	0	Unmodified	943.53385	0.53384611	469	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				1		16.205	16.205	2	0.009234	8195	DP1063-4	95.741	73.971			2.7275	1.8879	NaN	1	0	Median	7387100	2334800	5052300	2861	469	2686	5970	13051;13052	13051		2	9606
SGGASHSELIHNLR	0	1	Unmodified	1476.7433	0.74333839	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	5	0					1	14.474	14.474	3	2.7814E-05	6446	DP1063-5	160.18	160.18			1.1716	0.87502	NaN	1	0	Median	47632000	21604000	26027000	2862	192	2687	5971	13053;13054;13055;13056	13054		4	9606
SGGASHSELIHNLRK	1	1	Unmodified	1604.8383	0.83830141	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	5	0					2	13.545	13.545	3;4	0.00080558	5378	DP1063-5	107.99	72.645			1.4019	1.1952	NaN	1	0	Median	20170000	6688900	13481000	2863	192	2688	5972;5973	13057;13058;13059;13060	13060		4	9606
SGGGGGGGGCGGGGGVSSLR	0	1	Unmodified	1548.6699	0.66991545	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	0			1			14.358	14.358	2	0.0069302	5959	DP1063-3	94.007	68.769		+	NaN	NaN	NaN	0	0	Median	4614600	4614600	0	2864	19	2689	5974	13061;13062	13061		2	9606
SGGGGGGGLGSGGSIR	0	1	Unmodified	1231.5905	0.59052614	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.5	1.12	1	1	1	1		14.464	14.464	2	7.3047E-17	6023	DP1063-3	212.9	171.47		+	NaN	NaN	NaN	0	0	Median	192780000	192780000	0	2865	251	2690	5975;5976;5977;5978	13063;13064;13065;13066;13067;13068;13069;13070	13068		8	9606
SGGMSNELNNIISR	0	1	Oxidation (M)	1506.7097	0.709655	330	P53396	ACLY	ATP-citrate synthase	yes	yes	0	1	0	2	0		1				18.198	18.198	2	0.00020119	9719	DP1063-2	135.99	89.143			NaN	NaN	NaN	0	0	Median	14095000	0	14095000	2866	330	2691	5979	13071;13072	13072	425	2	9606
SGGTALHVAAAK	1	0	Unmodified	1081.588	0.58800695	49	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	2	0		1				13.295	13.295	2	0.049693	3264	DP1063-2	72.325	25.243			NaN	NaN	NaN	0	0	Median	0	0	0	2867	49	2692	5980	13073	13073		1	9606
SGKYDLDFKSPDDPSR	2	1	Unmodified	1825.8483	0.84825697	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	2	4	0				1		16.62	16.62	3	0.00053814	8659	DP1063-4	94.639	94.639			2.8795	2.9772	NaN	1	0	Median	11101000	2740500	8360400	2868	123	2693	5981	13074;13075	13074		2	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	0	Oxidation (M)	3352.5055	0.50548247	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.33	0.471		2	1			18.909	18.909	3	2.7935E-17	10408	DP1063-2	117.66	117.66			1.2934	1.082	10.53	2	0	Median	202660000	73079000	129590000	2869	154	2694	5982;5983;5984	13076;13077;13078;13079;13080;13081;13082;13083;13084;13085	13076	190	10	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	0	Unmodified	3336.5106	0.51056785	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				19.514	19.514	4	8.9318E-05	11535	DP1063-2	62.858	55.961			1.4133	1.1824	NaN	1	0	Median	89826000	35999000	53827000	2870	154	2694	5985	13086	13086		1	9606
SGPASTFNDR	0	1	Unmodified	1050.473	0.47303677	640	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				14.693	14.693	2	0.034433	4996	DP1063-2	87.149	55.215			NaN	NaN	NaN	0	0	Median	0	0	0	2871	640	2695	5986	13087	13087		1	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	1	1	Unmodified	2797.3361	0.33609636	414;129;480	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	1	3.25	0.433			3	1		22.73	22.73	2;3	4.9168E-17	17190	DP1063-3	198.98	167.37			1.9594	1.84	6.5142	2	0	Median	171020000	50200000	120820000	2872	129;414;480	2696	5987;5988;5989;5990	13088;13089;13090;13091;13092;13093;13094;13095;13096;13097;13098;13099;13100	13094		13	9606
SGSGTMNLGGSLTR	0	1	Oxidation (M)	1352.6354	0.63542742	296	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	0	4	0				1		15.644	15.644	2	0.0061873	7458	DP1063-4	100.04	76.893			NaN	NaN	NaN	0	0	Median	8140200	0	8140200	2873	296	2697	5991	13101;13102	13102	347	2	9606
SGSMDPSGAHPSVR	0	1	Oxidation (M)	1399.615	0.61502633	451	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	1	0	3	0			1			12.805	12.805	3	0.00035175	4075	DP1063-3	119.88	72.593			NaN	NaN	NaN	0	0	Median	4939500	0	4939500	2874	451	2698	5992	13103;13104	13104	553	2	9606
SGSSFVHQASFK	1	0	Unmodified	1280.6149	0.61494998	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	0	1					15.483	15.483	2	0.0028503	5110	DP1063-1	108.31	58.272			NaN	NaN	NaN	0	0	Median	1220200	0	1220200	2875	314	2699	5993	13105	13105		1	9606
SGTHTLPVEQGDMQGHFSMSVPVESDIAPVAR	0	1	2 Oxidation (M)	3410.5871	0.58710361	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	2	0	1	0	1					18.264	18.264	4	0.027062	8247	DP1063-1	48.226	29.91		+	NaN	NaN	NaN	0	0	Median	4205500	4205500	0	2876	8	2700	5994	13106	13106	6;7	1	
SGVSDHWALDDHHALHLTR	0	1	Unmodified	2166.0355	0.035497664	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.4	0.49			3	2		17.02	17.02	2;3;4	7.0933E-58	9582	DP1063-3	274.45	232.24			1.5063	1.1371	18.968	5	0	Median	748040000	305610000	442420000	2877	624	2701	5995;5996;5997;5998;5999	13107;13108;13109;13110;13111;13112;13113;13114;13115;13116;13117;13118;13119;13120;13121;13122;13123	13118		17	9606
SGVSLAALK	1	0	Unmodified	844.50182	0.5018177	175	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	0	4	0				1		17.583	17.583	2	0.035476	9911	DP1063-4	69.825	40.675			1.4191	0.98225	NaN	1	0	Median	37756000	14038000	23717000	2878	175	2702	6000	13124	13124		1	9606
SGVSLAALKK	2	0	Unmodified	972.59678	0.59678072	175	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	1	4	0				1		15.665	15.665	2	0.0018879	7444	DP1063-4	86.67	66.893			1.5891	1.6503	NaN	1	0	Median	27748000	10199000	17549000	2879	175	2703	6001	13125;13126;13127;13128	13127		4	9606
SHCIAEVEK	1	0	Unmodified	1071.5019	0.50189405	14	CON__P02769			yes	yes	0	0	0	2.6	1.02	1	1	2	1		13.298	13.298	2;3	0.00028247	4576	DP1063-3	195.05	150.73		+	NaN	NaN	NaN	0	0	Median	100460000	100460000	0	2880	14	2704	6002;6003;6004;6005;6006	13129;13130;13131;13132;13133;13134;13135;13136	13134		8	9606
SHCIAEVEKDAIPENLPPLTADFAEDKDVCK	3	0	Unmodified	3510.6647	0.66468523	14	CON__P02769			yes	yes	0	0	2	2.57	0.904	1	2	3	1		20.089	20.089	3;4;5	4.4535E-18	13745	DP1063-3	188.86	173.79		+	NaN	NaN	NaN	0	0	Median	699430000	699430000	0	2881	14	2705	6007;6008;6009;6010;6011;6012;6013	13137;13138;13139;13140;13141;13142;13143;13144;13145;13146;13147;13148;13149;13150;13151;13152;13153;13154;13155;13156;13157;13158;13159	13153		23	9606
SHFEQWGTLTDCVVMR	0	1	Oxidation (M)	1980.8822	0.88221641	141	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				2		19.441	19.441	2;3	0.010773	12517	DP1063-4	50.653	36.06			3.0268	1.8471	NaN	1	0	Median	8580500	1551100	7029400	2882	141	2706	6014;6015	13160;13161;13162	13161	151	3	9606
SHFEQWGTLTDCVVMRDPNTKR	1	2	Oxidation (M)	2692.2486	0.24860326	141	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	2	4	0				1		17.965	17.965	4	0.049098	10419	DP1063-4	43.164	21.815			NaN	NaN	NaN	0	0	Median	4271700	0	4271700	2883	141	2707	6016	13163	13163	151	1	9606
SHGVLGLYR	0	1	Unmodified	1000.5454	0.54541385	329	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		16.63	16.63	2	0.035224	8680	DP1063-4	69.998	42.861			1.7234	1.1087	NaN	1	0	Median	12967000	4600200	8366900	2884	329	2708	6017	13164;13165	13164		2	9606
SHHAASTTTAPTPAAR	0	1	Unmodified	1575.7754	0.7753668	544	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	0	1					12.6	12.6	3	0.011532	1901	DP1063-1	80.507	47.985			NaN	NaN	NaN	0	0	Median	416460	0	416460	2885	544	2709	6018	13166	13166		1	9606
SHLVHGSSPGVMGTSVATSASK	1	0	Oxidation (M)	2112.027	0.026966392	256	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	1	0	1	0	1					14.125	14.125	3	0.0062061	3550	DP1063-1	52.72	52.72			1.3989	1.2369	NaN	1	0	Median	1444300	570790	873520	2886	256	2710	6019	13167	13167	307	1	9606
SHSAPSEVGFSDAR	0	1	Unmodified	1445.6535	0.65352033	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	2	0		1				14.997	14.997	3	0.047915	5359	DP1063-2	58.116	25.592			NaN	NaN	NaN	0	0	Median	7784600	0	7784600	2887	547	2711	6020	13168;13169	13168		2	9606
SHTILLVQPTK	1	0	Acetyl (Protein N-term)	1277.7343	0.73433683	423	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	5	0					1	18.553	18.553	2	3.8423E-49	11482	DP1063-5	261.65	229.23			1.6711	1.4145	NaN	1	0	Median	37920000	13611000	24309000	2888	423	2712	6021	13170;13171;13172;13173	13172		4	9606
SIAFHSAVSLDPIK	1	0	Unmodified	1483.8035	0.80347903	670	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				2		19.022	19.022	2;3	9.119E-05	11875	DP1063-4	134.38	93.302			2.5399	1.7581	NaN	1	0	Median	12100000	2623300	9476500	2889	670	2713	6022;6023	13174;13175;13176;13177	13176		4	9606
SIAFPSIGSGR	0	1	Unmodified	1090.5771	0.57710791	69	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		19.278	19.278	2	0.051213	12253	DP1063-4	73.233	29.987			NaN	NaN	NaN	0	0	Median	0	0	0	2890	69	2714	6024	13178	13178		1	9606
SIFQHIQSAQSQR	0	1	Unmodified	1528.7746	0.77463852	668	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		2				16.573	16.573	2;3	0.013525	7528	DP1063-2	87.184	32.203			NaN	NaN	NaN	0	0	Median	14272000	0	14272000	2891	668	2715	6025;6026	13179;13180;13181	13181		3	9606
SILFVPTSAPR	0	1	Unmodified	1186.671	0.67100829	169	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	0		1				19.93	19.93	2	0.008999	12057	DP1063-2	87.149	55.92			2.2662	1.6541	NaN	1	0	Median	23878000	7464200	16414000	2892	169	2716	6027	13182;13183	13182		2	9606
SILSPGGSCGPIK	1	0	Unmodified	1271.6544	0.65437195	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.693	17.693	2	0.0012872	8929	DP1063-2	108.43	75.374			0.54867	0.45903	NaN	1	0	Median	24029000	13229000	10801000	2893	418	2717	6028	13184;13185	13184		2	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Oxidation (M)	2676.216	0.21596573	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.17	1.07		2	2	1	1	18.104	18.104	2;3	1.7651000000000002E-57	11010	DP1063-3	243.09	232.97			1.2775	1.0688	8.2369	5	0	Median	552820000	221550000	331280000	2894	595	2718	6029;6030;6031;6032;6033;6034	13186;13187;13188;13189;13190;13191;13192;13193;13194;13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212	13202	723	27	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	1	0	Unmodified	2660.2211	0.22105111	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		19.146	19.146	3	5.6836E-29	10961	DP1063-2	208.92	208.92			1.2966	1.0627	2.9616	2	0	Median	117340000	46576000	70767000	2895	595	2718	6035;6036;6037	13213;13214;13215;13216;13217;13218;13219;13220;13221;13222	13217		10	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	1	1	Oxidation (M)	3169.4557	0.4556955	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.8	0.748		2	2	1		16.831	16.831	4;5	5.1841E-14	9233	DP1063-3	142.25	142.25			1.3207	1.1979	8.2528	5	0	Median	369540000	145070000	224470000	2896	595	2719	6038;6039;6040;6041;6042	13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237;13238;13239;13240;13241;13242;13243	13236	723	21	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	1	1	Unmodified	3153.4608	0.46078088	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.5	0.5		1	1			17.658	17.658	4	5.0956E-13	8887	DP1063-2	118.04	118.04			1.5574	1.4671	NaN	1	0	Median	48713000	11470000	37243000	2897	595	2719	6043;6044	13244;13245;13246;13247;13248	13244		5	9606
SINDNIAIFTEVQK	1	0	Unmodified	1590.8253	0.82533668	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			21.121	21.121	2	0.0078913	15237	DP1063-3	84.605	61.578			1.2057	0.96817	NaN	1	0	Median	9042700	4131400	4911300	2898	449	2720	6045	13249;13250	13249		2	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Oxidation (M)	2319.1417	0.1416618	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			3			23.995	23.995	2;3	8.384E-08	18791	DP1063-3	104.55	86.299			3.2446	2.6054	4.4359	2	0	Median	68367000	17132000	51235000	2899	149	2721	6046;6047;6048	13251;13252;13253;13254;13255;13256	13251	160	6	9606
SINPDEAVAYGAAVQAAILMGDK	1	0	Unmodified	2303.1467	0.14674718	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			2			24.787	24.787	2;3	7.5652E-05	19768	DP1063-3	142.72	114.18			NaN	NaN	NaN	0	0	Median	6117900	0	6117900	2900	149	2721	6049;6050	13257;13258;13259;13260;13261;13262	13258		6	9606
SINPDEAVAYGAAVQAAILSGDK	1	0	Unmodified	2259.1383	0.13829098	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			24.104	24.104	2;3	2.4259E-15	18949	DP1063-3	222.3	222.3			2.9509	2.3696	14.973	2	0	Median	32645000	7363100	25282000	2901	153	2722	6051;6052	13263;13264;13265;13266;13267	13263		5	9606
SINPLGGFVHYGEVTNDFVMLK	1	0	Oxidation (M)	2452.2097	0.20968178	266	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	4	0				1		22.6	22.6	3	0.0062807	16381	DP1063-4	52.522	37.738			1.8496	1.2802	NaN	1	0	Median	12721000	4553600	8167900	2902	266	2723	6053	13268	13268	321	1	9606
SINQQSGAHVELQR	0	1	Unmodified	1565.791	0.79101686	584	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	3	0			2			14.648	14.648	2;3	0.00077777	6355	DP1063-3	109	65.615			NaN	NaN	NaN	0	0	Median	6729100	0	6729100	2903	584	2724	6054;6055	13269;13270;13271;13272	13271		4	9606
SIQADGLVWGSSK	1	0	Unmodified	1346.683	0.68302954	204	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	4	0				1		19.417	19.417	2	0.053326	12542	DP1063-4	72.958	5.3951			NaN	NaN	NaN	0	0	Median	8372500	0	8372500	2904	204	2725	6056	13273	13273		1	9606
SIQFVDWCPTGFK	1	0	Unmodified	1583.7442	0.74424959	413	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	yes	no	0	0	0	3.5	0.764			4	1	1	22.23	22.23	2	2.9666E-13	16592	DP1063-3	202.03	166.32			1.9358	1.4432	2.4487	2	0	Median	190040000	83190000	106850000	2905	413	2726	6057;6058;6059;6060;6061;6062	13274;13275;13276;13277;13278;13279;13280;13281;13282;13283	13274		10	9606
SIRPDNMSEYSK	1	1	Oxidation (M)	1441.6507	0.65074314	472	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	yes	no	0	1	1	3	0			1			13.464	13.464	3	0.0056979	4869	DP1063-3	63.662	53.874			2.0597	1.8681	NaN	1	0	Median	7291400	2340300	4951100	2906	472	2727	6063	13284	13284	615	1	9606
SISISVAGGGGGFGAAGGFGGR	0	1	Unmodified	1837.9071	0.90710925	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	4	0				1		20.424	20.424	2	4.8431E-05	13771	DP1063-4	121.76	73.019		+	NaN	NaN	NaN	0	0	Median	3519600	3519600	0	2907	22	2728	6064	13285;13286	13285		2	9606
SISISVAR	0	1	Unmodified	831.48142	0.48141661	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	4	0				1		16.547	16.547	2	0.039062	8567	DP1063-4	84.916	20.112		+	NaN	NaN	NaN	0	0	Median	39284000	39284000	0	2908	101	2729	6065	13287	13287		1	9606
SISLYYTGEK	1	0	Unmodified	1159.5761	0.57610486	187	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				18.246	18.246	2	0.038216	9683	DP1063-2	83.948	83.948			1.7809	1.4899	NaN	1	0	Median	31472000	11506000	19966000	2909	187	2730	6066	13288	13288		0	9606
SITHDIEEK	1	0	Unmodified	1070.5244	0.52440364	645	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	3	0			1			14.023	14.023	2	0.0041611	5572	DP1063-3	108.74	60.894			NaN	NaN	NaN	0	0	Median	5593200	0	5593200	2910	645	2731	6067	13289;13290	13290		2	9606
SIYGEKFEDENFILK	2	0	Unmodified	1830.904	0.90398093	401	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	5	0					2	20.059	20.059	2;3	5.4905E-09	13443	DP1063-5	169.58	145.76			2.4533	2.3971	2.4043	2	0	Median	58488000	16880000	41609000	2911	401	2732	6068;6069	13291;13292;13293;13294;13295;13296	13292		6	9606
SIYYITGESK	1	0	Unmodified	1159.5761	0.57610486	135;529	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2	0		1				17.728	17.728	2	0.0022803	8950	DP1063-2	105.1	66.941			2.4103	2.0165	NaN	1	0	Median	71527000	20128000	51400000	2912	135;529	2733	6070	13297;13298;13299;13300	13297		4	9606
SKAEAESLYQSK	2	0	Unmodified	1339.662	0.66195975	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.33	1.25	1	1		1		14.126	14.126	2;3	4.127E-15	4246	DP1063-2	216.91	173.26		+	NaN	NaN	NaN	0	0	Median	46997000	46997000	0	2913	101	2734	6071;6072;6073	13301;13302;13303;13304;13305	13303		5	9606
SKDLAEVGEGGGHSQAR	1	1	Unmodified	1696.8129	0.81287452	614	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	1	1	0	1					13.187	13.187	3	0.028324	2539	DP1063-1	75.911	45.053			NaN	NaN	NaN	0	0	Median	716100	0	716100	2914	614	2735	6074	13306	13306		1	9606
SKEEAEALYHSK	2	0	Unmodified	1390.6729	0.67285879	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	1.29	1	1	2	1	1	13.521	13.521	2;3	1.5741E-11	2932	DP1063-1	169.17	130.93		+	0.21327	0.22148	NaN	1	0	Median	106150000	105210000	938970	2915	22	2736	6075;6076;6077;6078;6079;6080	13307;13308;13309;13310;13311;13312;13313;13314;13315;13316;13317;13318	13308		12	9606
SKGSYSCEVTHEGSTVTK	2	0	Unmodified	1955.8895	0.88946986	24	CON__Q1RMN8			yes	yes	0	0	1	5	0					1	13.707	13.707	3	0.0041746	5514	DP1063-5	113.33	82.287		+	NaN	NaN	NaN	0	0	Median	12250000	12250000	0	2916	24	2737	6081	13319;13320	13320		2	
SKVDEAVAVLQAHQAK	2	0	Unmodified	1692.9159	0.91588303	156	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	3	0			1			17.178	17.178	3	0.00080153	9769	DP1063-3	107.82	107.82			1.9291	1.7308	NaN	1	0	Median	22613000	6862200	15751000	2917	156	2738	6082	13321	13321		1	9606
SLAAALDILNTATR	0	1	Unmodified	1428.7936	0.79364262	557	Q8TB52	FBXO30	F-box only protein 30	yes	yes	0	0	0	2	0		1				23.006	23.006	2	0.00031876	16070	DP1063-2	141.89	103.17			NaN	NaN	NaN	0	0	Median	9031600	0	9031600	2918	557	2739	6083	13322;13323	13322		2	9606
SLADELALVDVLEDK	1	0	Unmodified	1628.8509	0.85088273	127	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		24.868	24.868	2	0.00022997	19044	DP1063-4	160.22	160.22			2.5213	1.7452	NaN	1	0	Median	10092000	3610900	6481200	2919	127	2740	6084	13324;13325;13326;13327	13325		4	9606
SLAEACSEGDVNAVR	0	1	Unmodified	1576.7151	0.71513431	68	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	1.33	0.471	2	1				16.329	16.329	2	0.0016719	6030	DP1063-1	111.86	60.763			NaN	NaN	NaN	0	0	Median	0	0	0	2920	68	2741	6085;6086;6087	13328;13329;13330	13328		3	9606
SLAGSSGPGASSGTSGDHGELVVR	0	1	Unmodified	2184.0407	0.040702201	228	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	3.67	0.471			1	2		16.027	16.027	2;3	7.0699E-22	7920	DP1063-4	193.63	193.63			1.9768	1.4247	NaN	1	0	Median	34365000	10832000	23533000	2921	228	2742	6088;6089;6090	13331;13332;13333;13334;13335;13336	13334		6	9606
SLAQEALR	0	1	Unmodified	886.48723	0.48723027	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				16.153	16.153	2	0.0025198	6971	DP1063-2	126.52	47.053			1.1684	0.89352	NaN	1	0	Median	42728000	19273000	23455000	2922	666	2743	6091	13337;13338;13339;13340	13338		4	9606
SLDFYTR	0	1	Unmodified	900.43413	0.43413207	443	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	5	0					1	18.072	18.072	2	0.051267	10864	DP1063-5	89.55	26.835			3.6878	2.7542	NaN	1	0	Median	9442100	2557900	6884200	2923	443	2744	6092	13341	13341		1	9606
SLDGGAMLELLIR	0	1	Unmodified	1386.7541	0.754086	695				yes	yes	0	0	0	3	0			1			23.945	23.945	2	0.049626	18747	DP1063-3	61.78	21.863	+		1.1117	0.85678	NaN	1	0	Median	6945500	3017700	3927900	2924	695	2745	6093	13342	13342		1	9606
SLDGVTNDR	0	1	Unmodified	975.46214	0.46213773	642	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		14.638	14.638	2	0.035805	6075	DP1063-4	69.598	17.116			1.9517	1.2143	NaN	1	0	Median	7752900	3119200	4633700	2925	642	2746	6094	13343;13344	13344		2	9606
SLDLDSIIAEVK	1	0	Unmodified	1301.7078	0.70784731	101;30	CON__Q922U2;CON__Q5XQN5;CON__Q8BGZ7;CON__P50446;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2.83	1.34	1	2	1	1	1	23.421	23.421	1;2	1.3547E-16	18028	DP1063-3	222.3	152.48		+	NaN	NaN	NaN	0	0	Median	342400000	342400000	0	2926	30;101	2747	6095;6096;6097;6098;6099;6100	13345;13346;13347;13348;13349;13350;13351;13352;13353;13354;13355;13356;13357	13350		13	9606
SLDMDSIIAEVK	1	0	Oxidation (M)	1335.6592	0.65918256	15	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	3	0			1			19.459	19.459	2	0.0065148	12922	DP1063-3	99.53	66.268		+	NaN	NaN	NaN	0	0	Median	8455000	0	8455000	2927	15	2748	6101	13358	13358	20	1	9606
SLDQAISR	0	1	Unmodified	888.46649	0.46649483	581	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	2	0		1				15.393	15.393	2	0.050196	5915	DP1063-2	86.833	29.552			NaN	NaN	NaN	0	0	Median	0	0	0	2928	581	2749	6102	13359	13359		1	9606
SLEEIYLFSLPIK	1	0	Unmodified	1550.8596	0.85959692	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		24.513	24.513	2	2.5239E-28	18639	DP1063-4	232.88	232.88			1.8531	1.2827	NaN	1	0	Median	17228000	5493700	11734000	2929	172	2750	6103	13360;13361;13362;13363	13362		4	9606
SLESINSR	0	1	Unmodified	904.46141	0.46140945	395	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	14.653	14.653	2	0.011136	6700	DP1063-5	110.31	47.595			1.5549	1.1613	NaN	1	0	Median	19106000	7569800	11537000	2930	395	2751	6104	13364;13365;13366;13367	13367		4	9606
SLESLDTSLFAK	1	0	Unmodified	1309.6765	0.67654718	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			1			21.181	21.181	2	1.3819E-05	15242	DP1063-3	167.09	124.75			1.3723	1.102	NaN	1	0	Median	27286000	10342000	16944000	2931	456	2752	6105	13368;13369;13370;13371	13368		4	9606
SLETENAGLR	0	1	Unmodified	1088.5462	0.54620171	97	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	3	0			1			15.553	15.553	2	0.0028483	7606	DP1063-3	101.43	63.872			1.6823	1.1993	NaN	1	0	Median	16987000	6036800	10950000	2932	97	2753	6106	13372;13373	13373		2	9606
SLETENSALQLQVTER	0	1	Unmodified	1816.9167	0.91667089	189	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	3	0			1			19.008	19.008	2	0.0033494	12300	DP1063-3	116.84	58.164			NaN	NaN	NaN	0	0	Median	0	0	0	2933	189	2754	6107	13374	13374		1	9606
SLETENSALQLQVTEREEVR	0	2	Unmodified	2330.1714	0.17138202	189	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	3	0			1			18.605	18.605	3	0.0035988	11698	DP1063-3	93.226	50.509			NaN	NaN	NaN	0	0	Median	12580000	12580000	0	2934	189	2755	6108	13375	13375		1	9606
SLGPPQGEEDSVPR	0	1	Unmodified	1466.7001	0.70013617	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	2					16.562	16.562	2	0.00093789	6249	DP1063-1	122.33	55.213			NaN	NaN	NaN	0	0	Median	12247000	0	12247000	2935	420	2756	6109;6110	13376;13377;13378	13377		3	9606
SLGSVQAPSYGAR	0	1	Unmodified	1291.6521	0.65206377	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		16.673	16.673	2	0.00018837	8713	DP1063-4	158.79	158.79			2.4093	1.7446	NaN	1	0	Median	32765000	11249000	21516000	2936	118	2757	6111	13379;13380;13381;13382	13382		4	9606
SLGTRPPHVFAIADK	1	1	Unmodified	1607.8784	0.87837531	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		1				16.884	16.884	4	0.054221	7833	DP1063-2	42.708	14.127			NaN	NaN	NaN	0	0	Median	12264000	0	12264000	2937	654	2758	6112	13383	13383		1	9606
SLGYAYVNFQQPADAER	0	1	Unmodified	1927.9064	0.90644055	156	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			19.979	19.979	2	2.0924E-30	13640	DP1063-3	228.61	200.55			1.7465	1.3155	NaN	1	0	Median	34679000	11198000	23482000	2938	156	2759	6113	13384;13385;13386	13384		3	9606
SLHDALCVIR	0	1	Unmodified	1182.6179	0.61792687	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			17.515	17.515	2	0.002725	10218	DP1063-3	111.95	0			NaN	NaN	NaN	0	0	Median	24118000	0	24118000	2939	301	2760	6114	13387;13388	13388		2	9606
SLHDALCVLAQTVK	1	0	Unmodified	1553.8236	0.82356254	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			2			21.518	21.518	2;3	7.6442E-09	15714	DP1063-3	189.33	155.37			3.7545	3.0148	15.636	2	0	Median	55690000	11585000	44105000	2940	419	2761	6115;6116	13389;13390;13391;13392	13390		4	9606
SLHDALCVVK	1	0	Unmodified	1140.5961	0.59612879	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			16.741	16.741	2	1.7687E-05	9197	DP1063-3	135.79	106.63			4.5807	3.6783	NaN	1	0	Median	24261000	4246200	20015000	2941	179	2762	6117	13393;13394	13394		2	9606
SLHTLFGDELCK	1	0	Unmodified	1418.6864	0.68640036	14	CON__P02769			yes	yes	0	0	0	2.88	0.599	1	1	13	1		24.768	24.768	2;3	2.2821E-31	12371	DP1063-3	246.86	182.44		+	NaN	NaN	NaN	0	0	Median	1361300000	1361300000	0	2942	14	2763	6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133	13395;13396;13397;13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411;13412;13413;13414;13415;13416	13402		22	9606
SLICSISNEVPEHPCVSPVSNHVYER	0	1	Acetyl (Protein N-term)	3050.4226	0.42260446	655	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	1	0	0	3	0			1			20.912	20.912	3	3.8599E-07	14938	DP1063-3	136.62	100.65			NaN	NaN	NaN	0	0	Median	18389000	0	18389000	2943	655	2764	6134	13417;13418;13419	13418		3	9606
SLIEEGGDWDRR	0	2	Unmodified	1431.6743	0.67425577	497	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	1	4	0				1		17.578	17.578	3	0.016447	9930	DP1063-4	73.951	11.06			NaN	NaN	NaN	0	0	Median	0	0	0	2944	497	2765	6135	13420	13420		1	9606
SLLEGEGSSGGGGR	0	1	Unmodified	1261.5899	0.58985744	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.2	1.17	2	1	1	1		15.695	15.695	2	6.8524E-07	7504	DP1063-3	184.71	130.93		+	NaN	NaN	NaN	0	0	Median	173500000	173500000	0	2945	19	2766	6136;6137;6138;6139;6140	13421;13422;13423;13424;13425;13426;13427;13428;13429	13427		9	9606
SLLLSVNAR	0	1	Unmodified	971.57638	0.57637963	491	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	2	0		1				18.61	18.61	2	0.041468	10248	DP1063-2	82.241	38.433			NaN	NaN	NaN	0	0	Median	9193100	0	9193100	2946	491	2767	6141	13430	13430		1	9606
SLLVIPNTLAVNAAQDSTDLVAK	1	0	Unmodified	2352.29	0.2900406	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			2			23.118	23.118	2;3	8.3886E-11	17704	DP1063-3	172.57	172.57			3.8135	3.0622	22.594	2	0	Median	40994000	7318000	33676000	2947	179	2768	6142;6143	13431;13432;13433;13434;13435;13436;13437	13431		7	9606
SLLVNPEGPTLMR	0	1	Oxidation (M)	1441.7599	0.75989966	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	1.5	0.5	1	1				19.002	19.002	2	0.012992	10774	DP1063-2	71.221	71.221			2.35	1.7903	37.899	2	0	Median	32001000	9244000	22757000	2948	303	2769	6144;6145	13438;13439;13440;13441	13441	364	4	9606
SLNNQFASFIDK	1	0	Unmodified	1382.683	0.68302954	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2.67	0.943	1	1	3	1		20.718	20.718	2	2.3957E-08	14543	DP1063-3	192.44	148.02		+	NaN	NaN	NaN	0	0	Median	248830000	248830000	0	2949	101	2770	6146;6147;6148;6149;6150;6151	13442;13443;13444;13445;13446;13447;13448;13449;13450;13451	13446		10	9606
SLNNQFASFIDKVR	1	1	Unmodified	1637.8526	0.85255449	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	2.2	1.17	2	1	1	1		20.939	20.939	2;3	0.0018642	14926	DP1063-3	113.07	93.464		+	NaN	NaN	NaN	0	0	Median	94005000	94005000	0	2950	101	2771	6152;6153;6154;6155;6156	13452;13453;13454;13455;13456;13457;13458;13459	13458		8	9606
SLPDLGLR	0	1	Unmodified	869.49707	0.49706667	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		19.168	19.168	1;2	0.0092006	10933	DP1063-2	114.19	58.681			1.2027	1.3392	21.87	4	0	Linear	929410000	400040000	529380000	2951	154	2772	6157;6158;6159;6160	13460;13461;13462;13463;13464;13465;13466;13467	13463		7	9606
SLPDLGLRQENIR	0	2	Unmodified	1509.8263	0.82633974	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				18.243	18.243	2;3	0.0048926	9720	DP1063-2	89.679	57.52			1.3781	1.2833	18.842	2	0	Median	50775000	19731000	31044000	2952	154	2773	6161;6162	13468;13469;13470;13471	13469		4	9606
SLPDTELMKDTAR	1	1	Oxidation (M)	1491.7239	0.72390808	284	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2	0		1				15.692	15.692	2	0.011314	6305	DP1063-2	90.15	43.688			NaN	NaN	NaN	0	0	Median	0	0	0	2953	284	2774	6163	13472	13472	342	1	9606
SLQSVAEER	0	1	Unmodified	1017.5091	0.50908792	357	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	15.367	15.367	2	0.001268	7493	DP1063-5	123.98	83.916			1.954	1.4593	NaN	1	0	Median	45315000	18038000	27277000	2954	357	2775	6164	13473;13474	13473		2	9606
SLSDALISLQMVYPR	0	1	Oxidation (M)	1707.8866	0.88655673	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	1	0	2	0		1				23.165	23.165	2	0.0013161	16168	DP1063-2	133.07	107.06			1.3065	0.95431	NaN	1	0	Median	10566000	4872200	5693400	2955	666	2776	6165	13475;13476;13477;13478;13479;13480	13479	775	6	9606
SLSELLGPYGMK	1	0	Oxidation (M)	1309.6588	0.65878863	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	1	0	2	0		1				20.707	20.707	2	0.013111	13117	DP1063-2	68.846	37.086			0.92567	0.77443	NaN	1	0	Median	12462000	5324800	7137200	2956	666	2777	6166	13481	13481	776	1	9606
SLTNDWEDHLAVK	1	0	Unmodified	1526.7365	0.73652168	135;132	P08238;P07900	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	no	no	0	0	0	2.33	0.471		2	1			18.905	18.905	2;3	5.9912E-13	10594	DP1063-2	211.37	211.37			2.6818	2.2437	8.3867	2	0	Median	247000000	63986000	183010000	2957	135;132	2778	6167;6168;6169	13482;13483;13484;13485;13486;13487;13488;13489;13490	13483		9	9606
SLVASLAEPDFVVTDFAK	1	0	Unmodified	1907.988	0.98804492	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				23.606	23.606	2	0.00019594	16793	DP1063-2	144.51	107.83			1.9766	1.6536	NaN	1	0	Median	16651000	5209200	11442000	2958	195	2779	6170	13491;13492;13493;13494	13492		4	9606
SLVEASSSGVSVLSLCEK	1	0	Unmodified	1850.9295	0.92954376	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	4	0				1		20.49	20.49	2	0.0010855	13840	DP1063-4	160.46	94.622			NaN	NaN	NaN	0	0	Median	4739600	0	4739600	2959	659	2780	6171	13495;13496	13495		2	9606
SLVEIIEHGLVDEQQK	1	0	Unmodified	1835.9629	0.9628928	73	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				22.603	22.603	2;3	0.0005559	15530	DP1063-2	143.98	98.898			NaN	NaN	NaN	0	0	Median	6667900	2542900	4125000	2960	73	2781	6172;6173	13497;13498;13499;13500	13499		4	9606
SLVGLSQER	0	1	Unmodified	987.53491	0.53490874	338	P55196	MLLT4	Afadin	yes	yes	0	0	0	1	0	1					16.775	16.775	2	0.020482	6429	DP1063-1	91.318	22.142			NaN	NaN	NaN	0	0	Median	5554300	0	5554300	2961	338	2782	6174	13501	13501		1	9606
SLVIPEK	1	0	Acetyl (Protein N-term)	826.48002	0.48001963	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	1	0	0	5	0					1	19.771	19.771	1	0.032847	13185	DP1063-5	79.469	20.687			1.7831	1.5094	NaN	1	0	Median	49079000	17884000	31195000	2962	374	2783	6175	13502	13502		1	9606
SLVIPEKFQHILR	1	1	Acetyl (Protein N-term)	1620.9352	0.9351619	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	1	0	1	5	0					1	21.307	21.307	3	7.5119E-05	14993	DP1063-5	147.62	127.5			1.5288	1.3034	NaN	1	0	Median	13595000	6355200	7239400	2963	374	2784	6176	13503;13504;13505;13506	13503		4	9606
SLVNLGGSK	1	0	Unmodified	873.49198	0.4919813	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.5	0.5		1	1			16.679	16.679	1;2	0.0012886	9030	DP1063-3	123.72	56.686		+	NaN	NaN	NaN	0	0	Median	193090000	193090000	0	2964	101	2785	6177;6178	13507;13508;13509	13509		3	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	2 Oxidation (M)	2934.4328	0.43277522	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	3	1.41	2	2	2	2	2	18.656	18.656	3;4	4.6941E-11	9946	DP1063-2	99.13	99.13			1.0163	0.75263	14.017	9	0	Median	524570000	255400000	269160000	2965	460	2786	6179;6180;6181;6182;6183;6184;6185;6186;6187;6188	13510;13511;13512;13513;13514;13515;13516;13517;13518;13519;13520;13521;13522;13523;13524;13525;13526;13527;13528;13529;13530;13531;13532;13533;13534;13535;13536;13537;13538;13539;13540;13541;13542;13543;13544	13520	598;599	35	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	Oxidation (M)	2918.4379	0.43786059	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.83	1.07	3	2		1		20.421	20.421	3;4	1.1209E-20	10399	DP1063-1	179.06	179.06			1.1101	0.94125	13.621	6	0	Median	242760000	118040000	124720000	2966	460	2786	6189;6190;6191;6192;6193;6194	13545;13546;13547;13548;13549;13550;13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565;13566;13567;13568;13569	13549	598;599	25	9606
SLVQANPEVAMDSIIHMTQHISPTQR	0	1	Unmodified	2902.4429	0.44294597	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1		1		1		22.501	22.501	4	6.0818E-16	15406	DP1063-2	170.37	144.21			0.89923	0.65256	NaN	1	0	Median	17788000	7149200	10638000	2967	460	2786	6195;6196	13570;13571	13570		2	9606
SLYASSPGGVYATR	0	1	Unmodified	1427.7045	0.70449327	136	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			17.345	17.345	2	0.0002084	9977	DP1063-3	138.25	93.87			NaN	NaN	NaN	0	0	Median	22089000	0	22089000	2968	136	2787	6197	13572;13573	13572		2	9606
SLYQSAGVAPESFEYIEAHGTGTK	1	0	Unmodified	2541.2023	0.2023478	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.33	0.471	2	1				20.055	20.055	2;3	5.5325E-09	10406	DP1063-1	149	149			2.1628	1.8083	13.883	2	0	Median	46074000	12372000	33702000	2969	303	2788	6198;6199;6200	13574;13575;13576;13577;13578	13574		5	9606
SMFAGVPTMR	0	1	2 Oxidation (M)	1127.5104	0.51035025	53	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	2	0	1	0	1					16.261	16.261	2	0.040974	5960	DP1063-1	45.161	23.075			2.1868	1.7432	NaN	1	0	Median	5545300	1818500	3726800	2970	53	2789	6201	13579	13579	45;46	0	9606
SMMQDREDQSILCTGESGAGK	1	1	2 Oxidation (M)	2330.9777	0.97770929	252	P35579	MYH9	Myosin-9	yes	yes	0	2	1	1	0	1					15.942	15.942	3	0.028964	5602	DP1063-1	64.538	43.056			NaN	NaN	NaN	0	0	Median	1808100	0	1808100	2971	252	2790	6202	13580	13580	300;301	1	9606
SMPIRKDDEVQVVR	1	2	Oxidation (M)	1686.8723	0.87230365	356	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	1	2	5	0					1	14.051	14.051	3	0.014615	5927	DP1063-5	49.482	36.381			1.8932	2.12	NaN	1	0	Median	7078300	2906500	4171800	2972	356	2791	6203	13581	13581	454	1	9606
SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR	1	1	2 Oxidation (M)	3618.7698	0.769819	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	2	1	4	0				1		22.198	22.198	4	1.7508E-05	15998	DP1063-4	78.836	58.077			NaN	NaN	NaN	0	0	Median	8796000	0	8796000	2973	162	2792	6204	13582	13582	200;201	1	9606
SNEEEETSDSSLEK	1	0	Unmodified	1582.6482	0.64821976	85	O95425	SVIL	Supervillin	yes	yes	0	0	0	1	0	1					14.296	14.296	2	0.021583	3808	DP1063-1	83.226	52.657			NaN	NaN	NaN	0	0	Median	583850	0	583850	2974	85	2793	6205	13583;13584	13584		2	9606
SNLAYDIVQLPTGLTGIK	1	0	Unmodified	1902.0462	0.046228496	247	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	2	0		1				23.401	23.401	2	0.0004592	16531	DP1063-2	143.93	78.694			NaN	NaN	NaN	0	0	Median	0	0	0	2975	247	2794	6206	13585	13585		1	9606
SNNSETSSVAQSGSESK	1	0	Unmodified	1697.734	0.73401507	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	no	no	0	0	0	1	0	1					12.913	12.913	2	0.00014886	2214	DP1063-1	174.39	141.31			NaN	NaN	NaN	0	0	Median	850860	0	850860	2976	314	2795	6207	13586;13587	13586		2	9606
SNSFVYLEPLPR	0	1	Unmodified	1420.7351	0.73506511	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	1	0	1					20.932	20.932	2	2.695E-05	11470	DP1063-1	141.88	117.85		+	NaN	NaN	NaN	0	0	Median	4750100	4750100	0	2977	8	2796	6208	13588;13589	13588		2	
SNTAGSQSQVETEA	0	0	Unmodified	1407.6114	0.61138074	437	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	3	0			1			14.669	14.669	2	0.0071273	6393	DP1063-3	95.483	66.527			NaN	NaN	NaN	0	0	Median	0	0	0	2978	437	2797	6209	13590;13591	13590		2	9606
SNTENLSQHFR	0	1	Unmodified	1331.6218	0.62182627	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	2	0		1				14.99	14.99	3	0.01422	5399	DP1063-2	74.611	44.042			NaN	NaN	NaN	0	0	Median	7131200	0	7131200	2979	644	2798	6210	13592;13593	13592		2	9606
SNVSDAVAQSTR	0	1	Unmodified	1233.5949	0.59494282	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	15.125	15.125	2	1.9528E-08	7250	DP1063-5	178.54	158.78			2.437	1.8201	NaN	1	0	Median	37736000	11117000	26618000	2980	347	2799	6211	13594;13595;13596;13597;13598	13596		5	9606
SNYNFEKPFLWLAR	1	1	Unmodified	1783.9046	0.90459006	387	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	1	5	0					1	22.018	22.018	2	0.039855	15875	DP1063-5	107.85	70.519			NaN	NaN	NaN	0	0	Median	3586200	0	3586200	2981	387	2800	6212	13599	13599		1	9606
SNYSVSLVGPAPWGFR	0	1	Acetyl (Protein N-term)	1777.8788	0.87876924	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	1	0	0	3	0			1			25.001	25.001	2	0.00024035	20086	DP1063-3	155.02	104.81			NaN	NaN	NaN	0	0	Median	3108800	0	3108800	2982	582	2801	6213	13600;13601	13601		2	9606
SPAGLQVLNDYLADK	1	0	Unmodified	1602.8253	0.82533668	204	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	4	0				1		22.08	22.08	2	0.0029101	15842	DP1063-4	107.65	47.127			NaN	NaN	NaN	0	0	Median	5352300	5352300	0	2983	204	2802	6214	13602;13603	13602		2	9606
SPAPGAPTR	0	1	Unmodified	852.44537	0.44536545	606	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				12.887	12.887	2	0.023737	2807	DP1063-2	77.923	40.763			1.2642	1.0059	NaN	1	0	Median	3813800	1504100	2309700	2984	606	2803	6215	13604;13605	13604		2	9606
SPASDTYIVFGEAK	1	0	Unmodified	1483.7195	0.71947463	33	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	4	0				1		19.709	19.709	2	0.00017076	12807	DP1063-4	161.93	91.531			NaN	NaN	NaN	0	0	Median	7218500	0	7218500	2985	33	2804	6216	13606;13607	13606		2	9606
SPDFTNENPLETR	0	1	Unmodified	1518.6951	0.69505079	107	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1.5	0.5	1	1				18.811	18.811	2	0.0010698	10545	DP1063-2	121.29	92.579			NaN	NaN	NaN	0	0	Median	18111000	0	18111000	2986	107	2805	6217;6218	13608;13609;13610	13610		3	9606
SPDTNYLFMGDYVDR	0	1	Oxidation (M)	1807.7723	0.77231483	384	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	yes	no	0	1	0	4	0				1		20.381	20.381	2	0.013425	13699	DP1063-4	99.834	55.292			NaN	NaN	NaN	0	0	Median	0	0	0	2987	384	2806	6219	13611	13611	476	1	9606
SPEVLLGSAR	0	1	Unmodified	1027.5662	0.56620887	120	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		17.276	17.276	2	0.001297	9536	DP1063-4	111.46	25.779			1.6417	1.0629	NaN	1	0	Median	13634000	4606300	9027800	2988	120	2807	6220	13612;13613;13614;13615;13616	13613		5	9606
SPEYPEGR	0	1	Unmodified	933.41921	0.41921028	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			13.858	13.858	2	2.0562E-16	3231	DP1063-1	178.6	178.6			1.0743	1.0653	17.295	3	0	Plateau	611950000	289870000	322080000	2989	460	2808	6221;6222;6223	13617;13618;13619;13620;13621;13622;13623;13624;13625;13626;13627;13628;13629;13630;13631;13632;13633;13634;13635	13620		19	9606
SPFEVYVDK	1	0	Unmodified	1082.5284	0.52842638	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					18.821	18.821	2	0.010096	8914	DP1063-1	98.582	50.925			NaN	NaN	NaN	0	0	Median	8113200	0	8113200	2990	190	2809	6224	13636;13637	13637		2	9606
SPGSTPTTPTSSQAPQK	1	0	Unmodified	1670.8111	0.81114318	256	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	0	2					13.853	13.853	2	0.0063384	3276	DP1063-1	96.059	41.283			NaN	NaN	NaN	0	0	Median	640220	0	640220	2991	256	2810	6225;6226	13638;13639;13640	13640		3	9606
SPILVATAVAAR	0	1	Unmodified	1167.6976	0.69755739	42	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			18.655	18.655	2	0.019301	11807	DP1063-3	83.397	37.395			NaN	NaN	NaN	0	0	Median	13961000	0	13961000	2992	42	2811	6227	13641	13641		1	9606
SPLEVEAQWAVEEGACPR	0	1	Unmodified	2026.9418	0.94183978	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.5	0.5		2	2			21.353	21.353	2;3	1.2598000000000001E-48	15454	DP1063-3	267.21	221.93			NaN	NaN	NaN	0	0	Median	170770000	0	170770000	2993	524	2812	6228;6229;6230;6231	13642;13643;13644;13645;13646;13647;13648;13649	13649		8	9606
SPLVMDVLNIQGVQR	0	1	Oxidation (M)	1683.8978	0.89779012	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	1	0	1					21.087	21.087	2	0.053237	11669	DP1063-1	84.821	26.984			NaN	NaN	NaN	0	0	Median	0	0	0	2994	487	2813	6232	13650	13650		1	9606
SPPPGMGLNQNR	0	1	Oxidation (M)	1282.6088	0.60881874	199	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	0	2	0		1				13.634	13.634	2	0.035321	3588	DP1063-2	58.433	32.697			1.8998	1.4045	NaN	1	0	Median	8983800	3171000	5812800	2995	199	2814	6233	13651	13651	254	1	9606
SPQNQYPAELMR	0	1	Oxidation (M)	1448.6718	0.67181293	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	1	0	2	0		1				16.308	16.308	2	0.010031	7120	DP1063-2	75.652	52.274			1.5248	1.1009	NaN	1	0	Median	19924000	9381400	10543000	2996	246	2815	6234	13652	13652	285	1	9606
SPQSDPADTPTNTK	1	0	Unmodified	1457.6634	0.66341631	284	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	2					13.344	13.344	2	0.0047435	2683	DP1063-1	98.105	46.264			NaN	NaN	NaN	0	0	Median	0	0	0	2997	284	2816	6235;6236	13653;13654	13653		2	9606
SPSDSSTASTPVAEQIER	0	1	Unmodified	1860.8701	0.87011462	519	Q16643	DBN1	Drebrin	yes	yes	0	0	0	2	0		1				16.699	16.699	2	1.4027E-11	7640	DP1063-2	198.23	142.83			NaN	NaN	NaN	0	0	Median	10439000	0	10439000	2998	519	2817	6237	13655;13656	13656		2	9606
SPSGSAFGSQENLR	0	1	Unmodified	1435.6692	0.66917039	589	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	1	0	1					16.279	16.279	2	0.011994	5982	DP1063-1	87.641	10.449			NaN	NaN	NaN	0	0	Median	2161500	0	2161500	2999	589	2818	6238	13657	13657		1	9606
SPSWQRPNQGVPSTGR	0	2	Unmodified	1752.8656	0.86557879	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	1	3.5	0.5			1	1		15.522	15.522	3	0.030496	7499	DP1063-3	73.802	28.012			NaN	NaN	NaN	0	0	Median	13639000	0	13639000	3000	582	2819	6239;6240	13658;13659;13660	13659		3	9606
SPSWYGIPR	0	1	Unmodified	1061.5294	0.52942943	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				19.213	19.213	2	0.010068	11050	DP1063-2	94.302	46.645			0.69707	0.51697	NaN	1	0	Median	29139000	17148000	11991000	3001	418	2820	6241	13661;13662;13663;13664	13664		4	9606
SPTDWALFTYEGNSNDIR	0	1	Unmodified	2084.9439	0.94394827	649	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	3	0			1			22.364	22.364	2	0.00041866	16828	DP1063-3	131.66	77.52			NaN	NaN	NaN	0	0	Median	5236000	0	5236000	3002	649	2821	6242	13665;13666	13666		2	9606
SPTWFGIPR	0	1	Unmodified	1059.5502	0.55016488	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				20.96	20.96	2	0.0050785	13372	DP1063-2	107.29	79.121			0.75509	0.56356	NaN	1	0	Median	31542000	19601000	11941000	3003	418	2822	6243	13667;13668;13669	13668		3	9606
SPWSNKYDPPLEDGAMPSAR	1	1	Oxidation (M)	2233.011	0.010981977	296	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	1	1	4	0				1		17.903	17.903	3	0.056365	10354	DP1063-4	57.41	37.335			NaN	NaN	NaN	0	0	Median	0	0	0	3004	296	2823	6244	13670	13670		1	9606
SPYQEFTDHLVK	1	0	Unmodified	1462.7092	0.70924429	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		18.917	18.917	3	0.00041358	11719	DP1063-4	99.732	70.433			2.0392	1.4115	NaN	1	0	Median	39711000	12718000	26993000	3005	172	2824	6245	13671;13672;13673;13674	13674		4	9606
SPYTVTVGQACNPSACR	0	1	Unmodified	1866.8353	0.83526622	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				17.094	17.094	2	1.4607999999999998E-102	6802	DP1063-1	310.34	279.52			9.0712	7.2199	NaN	1	0	Median	24289000	1293500	22996000	3006	190	2825	6246;6247	13675;13676;13677;13678	13676		4	9606
SQAEPLSGNKEPLADTSSNQQK	2	0	Unmodified	2328.1193	0.11934645	313	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	1	0	1					15.272	15.272	3	8.1784E-05	4861	DP1063-1	150.13	120.99			NaN	NaN	NaN	0	0	Median	1768500	0	1768500	3007	313	2826	6248	13679;13680	13679		2	9606
SQAFIEMETR	0	1	Oxidation (M)	1226.5601	0.56013721	281	P43243	MATR3	Matrin-3	yes	yes	0	1	0	2	0		1				16.224	16.224	2	0.0046455	7032	DP1063-2	87.789	53.068			2.1252	1.5399	NaN	1	0	Median	16350000	5171000	11179000	3008	281	2827	6249	13681;13682	13681	340	2	9606
SQDIYLR	0	1	Unmodified	893.46068	0.46068117	447	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	16.216	16.216	2	0.041359	8593	DP1063-5	94.262	44.903			NaN	NaN	NaN	0	0	Median	16056000	0	16056000	3009	447	2828	6250	13683;13684	13684		2	9606
SQEEVVSLLR	0	1	Unmodified	1158.6245	0.62445203	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				19.266	19.266	2	0.009207	11146	DP1063-2	96.665	54.789			NaN	NaN	NaN	0	0	Median	5831700	0	5831700	3010	558	2829	6251	13685	13685		1	9606
SQESGYYDR	0	1	Unmodified	1103.452	0.45196697	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				14.122	14.122	2	0.0015371	4274	DP1063-2	122.52	81.014			2.271	1.6745	NaN	1	0	Median	9267800	2677000	6590800	3011	281	2830	6252	13686;13687	13686		2	9606
SQICDNAALYAQK	1	0	Unmodified	1480.698	0.69802768	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				16.817	16.817	2	0.01006	7770	DP1063-2	89.548	54.007			NaN	NaN	NaN	0	0	Median	8914800	0	8914800	3012	336	2831	6253	13688	13688		1	9606
SQIFSTASDNQPTVTIK	1	0	Unmodified	1835.9265	0.92650729	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			2			18.56	18.56	2	4.5862E-09	11713	DP1063-3	180.61	150.41			2.7744	2.2279	NaN	1	0	Median	25209000	6530000	18679000	3013	152	2832	6254;6255	13689;13690;13691;13692	13691		4	9606
SQIHDIVLVGGSTR	0	1	Unmodified	1480.7998	0.79979063	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3.33	0.471			2	1		17.3	17.3	2;3	3.3048E-05	9928	DP1063-3	171.99	171.99			3.5581	2.892	0.66351	2	0	Median	190430000	43818000	146610000	3014	153	2833	6256;6257;6258	13693;13694;13695;13696;13697;13698;13699;13700;13701	13697		9	9606
SQLLGSAHEVQR	0	1	Unmodified	1323.6895	0.6895119	479	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	0	1					14.84	14.84	2	0.028554	4387	DP1063-1	66.262	35.87			2.0078	1.7339	NaN	1	0	Median	1957600	771040	1186500	3015	479	2834	6259	13702	13702		1	9606
SQLLSYIDR	0	1	Unmodified	1093.5768	0.57677356	246	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				19.541	19.541	2	0.0015371	11515	DP1063-2	122.52	78.709			1.5455	1.1273	NaN	1	0	Median	11386000	4359500	7026400	3016	246	2835	6260	13703;13704	13704		2	9606
SQNVMAAASIANIVK	1	0	Oxidation (M)	1531.8028	0.8028271	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	3	0			1			18.986	18.986	2	0.0017838	12241	DP1063-3	133.32	133.32			4.8998	3.9345	NaN	1	0	Median	30604000	6183900	24420000	3017	179	2836	6261	13705;13706;13707;13708	13706	227	4	9606
SQPDPVDTPTSSKPQSK	2	0	Unmodified	1797.8745	0.87447172	284	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					13.639	13.639	3	0.011709	3055	DP1063-1	84.559	64.036			NaN	NaN	NaN	0	0	Median	834060	0	834060	3018	284	2837	6262	13709	13709		1	9606
SQSAAVTPSSTTSSTR	0	1	Unmodified	1566.7485	0.74854293	516	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	4	0				1		13.515	13.515	2	0.00033091	4739	DP1063-4	134.18	79.696			NaN	NaN	NaN	0	0	Median	2526600	0	2526600	3019	516	2838	6263	13710;13711	13710		2	9606
SQVFSTAADGQTQVEIK	1	0	Unmodified	1807.8952	0.89520716	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		18.04	18.04	2	4.7002E-09	10910	DP1063-3	180.3	155.45			1.5439	1.2397	NaN	1	0	Median	45763000	21293000	24470000	3020	263	2839	6264;6265;6266	13712;13713;13714;13715;13716;13717;13718	13717		7	9606
SQYEQLAEQNR	0	1	Unmodified	1364.6321	0.6320566	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.58	1	1		1	1	15.728	15.728	2	5.4138E-08	7557	DP1063-4	189.18	163.88		+	NaN	NaN	NaN	0	0	Median	53816000	53816000	0	3021	19	2840	6267;6268;6269;6270	13719;13720;13721;13722;13723;13724;13725	13724		7	9606
SQYEQLAEQNRK	1	1	Unmodified	1492.727	0.72701962	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.78	1.31	2	2	2	2	1	14.51	14.51	2;3	6.1107E-32	6115	DP1063-3	256.48	215.05		+	NaN	NaN	NaN	0	0	Median	378250000	378250000	0	3022	19	2841	6271;6272;6273;6274;6275;6276;6277;6278;6279	13726;13727;13728;13729;13730;13731;13732;13733;13734;13735;13736;13737;13738;13739;13740;13741;13742;13743	13737		18	9606
SREIFLSQPILLELEAPLK	1	1	Unmodified	2195.2566	0.25655562	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			2	2		23.609	23.609	2;3	0.00015052	17593	DP1063-4	163.96	143.1			NaN	NaN	NaN	0	0	Median	41928000	0	41928000	3023	260;365;366	2842	6280;6281;6282;6283	13744;13745;13746;13747;13748;13749;13750	13749		7	9606
SRLDQELK	1	1	Unmodified	987.53491	0.53490874	291	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	14.281	14.281	2	0.054473	6274	DP1063-5	68.383	13.771			1.8151	1.5475	NaN	1	0	Median	17948000	5826400	12122000	3024	291	2843	6284	13751;13752	13752		2	9606
SRPFTVAASFQSTSVK	1	1	Unmodified	1711.8893	0.88933392	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	2	0		2				17.684	17.684	2;3	0.0043721	8957	DP1063-2	96.096	68.666			NaN	NaN	NaN	0	0	Median	14498000	0	14498000	3025	644	2844	6285;6286	13753;13754;13755	13755		3	9606
SSATVTGEPPSYSSGSDSSK	1	0	Unmodified	1929.844	0.84395945	256	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	0	1					15.235	15.235	2	0.0010428	4825	DP1063-1	128.76	100.71			NaN	NaN	NaN	0	0	Median	0	0	0	3026	256	2845	6287	13756	13756		1	9606
SSDGRPDSGGTLR	0	2	Unmodified	1303.6117	0.61165551	338	P55196	MLLT4	Afadin	yes	yes	0	0	1	1	0	1					13.028	13.028	3	0.015665	2310	DP1063-1	79.639	28.847			NaN	NaN	NaN	0	0	Median	1846200	0	1846200	3027	338	2846	6288	13757	13757		1	9606
SSEELLSALQK	1	0	Unmodified	1203.6347	0.63468237	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				19.385	19.385	2	1.1312E-07	11224	DP1063-2	181.55	141.48			NaN	NaN	NaN	0	0	Median	26660000	0	26660000	3028	654	2847	6289	13758;13759	13759		2	9606
SSGEIVYCGQVFEK	1	0	Unmodified	1601.7396	0.73955814	436	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	18.66	18.66	2	0.0028439	11614	DP1063-5	98.182	75.17			2.0677	1.7503	NaN	1	0	Median	16567000	4780700	11787000	3029	436	2848	6290	13760;13761;13762;13763	13760		4	9606
SSGPTSLFAVTVAPPGAR	0	1	Unmodified	1713.905	0.90498399	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				21.098	21.098	2	0.00035984	13559	DP1063-2	127.78	127.78			1.6934	1.3001	NaN	1	0	Median	44895000	17805000	27090000	3030	429	2849	6291	13764;13765;13766;13767	13765		4	9606
SSGPYGGGGQYFAKPR	1	1	Unmodified	1627.7743	0.77430417	141	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				1		16.069	16.069	3	0.00076548	7977	DP1063-4	144.51	144.51			1.9688	1.9142	NaN	1	0	Median	19882000	6663600	13218000	3031	141	2850	6292	13768;13769;13770;13771	13769		4	9606
SSGSPYGGGYGSGGGSGGYGSR	0	1	Unmodified	1909.7827	0.7826966	322	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		15.775	15.775	2	1.3617E-15	7613	DP1063-4	192.4	166.49			1.9532	1.1956	NaN	1	0	Median	8790200	2773000	6017300	3032	322	2851	6293	13772;13773;13774;13775	13773		4	9606
SSITEPEGPNGPNIQK	1	0	Unmodified	1666.8162	0.81622856	475	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	2	0		1				16.297	16.297	2	0.00091625	7123	DP1063-2	141.08	71.028			NaN	NaN	NaN	0	0	Median	8251800	0	8251800	3033	475	2852	6294	13776;13777;13778	13777		3	9606
SSLGPVGLDK	1	0	Unmodified	971.52876	0.52876073	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			17.063	17.063	2	0.035207	9639	DP1063-3	81.338	28.622			NaN	NaN	NaN	0	0	Median	17308000	0	17308000	3034	179	2853	6295	13779	13779		1	9606
SSLSSHSHQSQIYR	0	1	Unmodified	1615.7703	0.77028142	50	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	2	0		1				13.173	13.173	3	0.0094466	3126	DP1063-2	84.892	37.649			NaN	NaN	NaN	0	0	Median	0	0	0	3035	50	2854	6296	13780	13780		1	9606
SSMSGLHLVK	1	0	Oxidation (M)	1073.5539	0.55392962	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.67	1.49	2	1	1	1	1	14.542	14.542	2;3	1.4675E-06	4040	DP1063-1	146.69	146.69			1.2936	1.0136	16.285	6	0	Median	280400000	119520000	160880000	3036	460	2855	6297;6298;6299;6300;6301;6302	13781;13782;13783;13784;13785;13786;13787;13788;13789;13790;13791;13792;13793;13794;13795;13796;13797;13798;13799;13800	13782	600	20	9606
SSMSGLHLVK	1	0	Unmodified	1057.559	0.559015	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				16.109	16.109	2	0.00078225	5790	DP1063-1	115.7	115.7			1.244	1.076	19.036	2	0	Median	89969000	38188000	51781000	3037	460	2855	6303;6304	13801;13802;13803;13804	13801		4	9606
SSQSSSQQFSGIGR	0	1	Unmodified	1454.675	0.67498405	568	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	2.67	0.471		1	2			15.807	15.807	2	0.00026938	7871	DP1063-3	160.86	77.21			NaN	NaN	NaN	0	0	Median	12153000	0	12153000	3038	568	2856	6305;6306;6307	13805;13806;13807;13808;13809	13807		5	9606
SSQTSGTNEQSSAIVSAR	0	1	Unmodified	1808.85	0.85004788	65	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	2	0		1				14.927	14.927	2	0.00084203	5303	DP1063-2	137.62	100.94			NaN	NaN	NaN	0	0	Median	0	0	0	3039	65	2857	6308	13810	13810		1	9606
SSSPAPADIAQTVQEDLR	0	1	Unmodified	1883.9225	0.92248455	467	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			1			21.237	21.237	2	0.0035901	15303	DP1063-3	108.23	82.532			NaN	NaN	NaN	0	0	Median	8572700	0	8572700	3040	467	2858	6309	13811	13811		1	9606
SSSSSSASAAAAAAAASSSASCSR	0	1	Unmodified	2088.8978	0.89780271	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			16.348	16.348	2	6.3811E-09	8678	DP1063-3	159.44	132.69			1.3214	0.97659	NaN	1	0	Median	11178000	4948600	6229400	3041	449	2859	6310	13812;13813	13813		2	9606
SSVAVLTQESFAEHR	0	1	Acetyl (Protein N-term)	1701.8322	0.83221298	427	Q00341	HDLBP	Vigilin	yes	yes	1	0	0	2	0		1				20.678	20.678	2	0.03963	13044	DP1063-2	85.522	41.978			NaN	NaN	NaN	0	0	Median	4531100	4531100	0	3042	427	2860	6311	13814	13814		1	9606
SSVVGGFVSHYLLEK	1	0	Unmodified	1620.8512	0.8511575	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		2				21.196	21.196	2;3	8.2513E-05	13736	DP1063-2	158.86	126.13			NaN	NaN	NaN	0	0	Median	58332000	0	58332000	3043	654	2861	6312;6313	13815;13816;13817	13816		3	9606
STAGDTHLGGEDFDNR	0	1	Unmodified	1690.7183	0.71830543	153	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0.707		1	2	1		15.716	15.716	2;3	7.7243E-68	7710	DP1063-3	291.5	282.49			3.3471	2.9206	13.258	3	0	Plateau	358480000	80408000	278070000	3044	153	2862	6314;6315;6316;6317	13818;13819;13820;13821;13822;13823;13824	13821		7	9606
STELLIR	0	1	Unmodified	830.48617	0.48616764	416;533	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	0	5	0					2	17.21	17.21	2	0.036928	9735	DP1063-5	108.98	40.584			NaN	NaN	NaN	0	0	Median	0	0	0	3045	416;533	2863	6318;6319	13825;13826	13826		2	9606
STESLQANVQR	0	1	Unmodified	1231.6157	0.61567826	214	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4.5	0.5				1	1	14.775	14.775	2	4.6589E-20	6779	DP1063-5	217.02	217.02			2.0293	1.4005	5.4177	2	0	Median	52609000	17675000	34934000	3046	214	2864	6320;6321	13827;13828;13829;13830;13831;13832;13833;13834	13831		8	9606
STFETEHAGQR	0	1	Unmodified	1261.5687	0.56872807	313	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1.8	0.748	2	2	1			13.17	13.17	2;3	4.5459E-05	2535	DP1063-1	140.83	85.286			13.735	12.187	NaN	1	0	Median	10422000	128070	10294000	3047	313	2865	6322;6323;6324;6325;6326	13835;13836;13837;13838;13839;13840;13841;13842	13837		8	9606
STFSTNYR	0	1	Unmodified	974.44576	0.44575938	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		15.386	15.386	2	0.033048	7099	DP1063-4	87.754	29.15			NaN	NaN	NaN	0	0	Median	6018400	6018400	0	3048	118	2866	6327	13843	13843		1	9606
STFVLDEFKR	1	1	Unmodified	1240.6452	0.64518747	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	3.67	0.471			1	2		18.815	18.815	2;3	9.9286E-11	11572	DP1063-4	185.72	141.6			2.3328	2.2197	4.438	3	0	Median	64166000	20421000	43745000	3049	218	2867	6328;6329;6330	13844;13845;13846;13847;13848;13849	13846		6	9606
STGASFIR	0	1	Unmodified	837.43447	0.43446642	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				15.798	15.798	2	0.0023404	6381	DP1063-2	126.28	90.784			NaN	NaN	NaN	0	0	Median	59741000	0	59741000	3050	654	2868	6331	13850;13851	13850		2	9606
STGEAFVQFASQEIAEK	1	0	Unmodified	1840.8843	0.88430813	237	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3.5	0.5			1	1		21.813	21.813	2	2.2654E-41	16046	DP1063-3	247.14	223.67			1.6022	1.2865	NaN	1	0	Median	83729000	26650000	57079000	3051	237	2869	6332;6333	13852;13853;13854;13855	13852		4	9606
STGGAPTFNVTVTK	1	0	Unmodified	1378.7092	0.70924429	130	P07737	PFN1	Profilin-1	yes	yes	0	0	0	5	0					1	17.607	17.607	2	0.0015485	10252	DP1063-5	123.67	108.98			2.64	2.2348	NaN	1	0	Median	30084000	9325200	20759000	3052	130	2870	6334	13856;13857	13856		2	9606
STGSATSLASQGER	0	1	Unmodified	1350.6375	0.63753591	530	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	1.5	0.5	1	1				14.391	14.391	2	0.00017076	3899	DP1063-1	137.01	69.799			NaN	NaN	NaN	0	0	Median	7282700	0	7282700	3053	530	2871	6335;6336	13858;13859;13860;13861	13859		4	9606
STLEPVEK	1	0	Unmodified	901.47566	0.47566253	149;176	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.33	0.471			2	1		14.433	14.433	1;2	0.00034927	6240	DP1063-3	141.39	65.354			2.8849	2.3166	6.7844	3	0	Plateau	482890000	120990000	361900000	3054	176;149	2872	6337;6338;6339	13862;13863;13864;13865;13866	13864		5	9606
STLINTLFK	1	0	Unmodified	1035.5964	0.59644637	645	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	3	0			1			21.204	21.204	2	0.031851	15317	DP1063-3	72.325	41.822			1.8051	1.4495	NaN	1	0	Median	9759800	4123700	5636200	3055	645	2873	6340	13867	13867		1	9606
STLQTMESDIYTEVR	0	1	Oxidation (M)	1787.8247	0.82474434	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	1	0	3	0			1			18.643	18.643	2	1.1746E-09	11790	DP1063-3	191.53	167.68			1.2708	0.94645	NaN	1	0	Median	29954000	13731000	16222000	3056	449	2874	6341	13868;13869;13870;13871	13869	552	4	9606
STLRDQINSDHR	0	2	Unmodified	1440.707	0.70695288	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			1			13.807	13.807	3	0.044437	5285	DP1063-3	50.467	50.467			1.2749	1.1656	NaN	1	0	Median	10786000	4849400	5936600	3057	456	2875	6342	13872;13873	13873		2	9606
STLTDSLVCK	1	0	Unmodified	1122.5591	0.55907458	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				17.62	17.62	2	0.00013013	8849	DP1063-2	128.12	101.43			3.585	2.9992	NaN	1	0	Median	36856000	6427300	30429000	3058	165	2876	6343	13874;13875	13874		2	9606
STLVGHDTFTK	1	0	Unmodified	1204.6088	0.60880197	32	CON__Streptavidin			yes	yes	0	0	0	4.19	1.33	2	1	2	2	14	15.069	15.069	2;3	5.675100000000001E-31	20890	DP1063-5	245.5	197.54		+	NaN	NaN	NaN	0	0	Median	30438000000	30438000000	0	3059	32	2877	6344;6345;6346;6347;6348;6349;6350;6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363;6364	13876;13877;13878;13879;13880;13881;13882;13883;13884;13885;13886;13887;13888;13889;13890;13891;13892;13893;13894;13895;13896;13897;13898;13899;13900;13901;13902;13903;13904;13905;13906;13907;13908;13909;13910;13911;13912;13913;13914;13915;13916;13917;13918;13919;13920;13921;13922;13923;13924;13925;13926;13927;13928;13929;13930;13931;13932;13933;13934;13935;13936;13937;13938;13939;13940;13941;13942;13943;13944;13945;13946;13947;13948;13949;13950;13951;13952;13953;13954;13955;13956;13957;13958;13959;13960;13961	13913		86	
STMMTQEQIQK	1	0	2 Oxidation (M)	1355.6061	0.60610113	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	2	0	2.5	0.5		1	1			12.94	12.94	2	2.3421E-06	2845	DP1063-2	159.34	135.81			NaN	NaN	NaN	0	0	Median	14167000	0	14167000	3060	654	2878	6365;6366	13962;13963;13964;13965	13963	765;766	4	9606
STMQELNSR	0	1	Unmodified	1064.4921	0.49205765	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	1	1		1			14.747	14.747	2	0.001289	4272	DP1063-1	119.21	85.025		+	NaN	NaN	NaN	0	0	Median	78199000	78199000	0	3061	251	2879	6367;6368	13966;13967;13968	13966		3	9606
STNENANTPAAR	0	1	Acetyl (Protein N-term)	1286.5851	0.58510641	324	P52292	KPNA2	Importin subunit alpha-1	yes	yes	1	0	0	3	0			1			14.012	14.012	2	0.00079497	5472	DP1063-3	147.75	113.55			2.0527	1.5441	NaN	1	0	Median	9145700	2866400	6279300	3062	324	2880	6369	13969;13970	13970		2	9606
STNGDTFLGGEDFDQALLR	0	1	Unmodified	2054.9545	0.95451296	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			22.532	22.532	2	3.3405999999999997E-46	16948	DP1063-3	256.13	237.4			2.092	1.572	21.707	2	0	Median	44564000	16166000	28398000	3063	263	2881	6370;6371	13971;13972;13973;13974;13975;13976	13973		6	9606
STPAEDDSRDSQVK	1	1	Unmodified	1533.6907	0.6906937	644	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	1	2	0		1				12.673	12.673	3	0.0057804	2548	DP1063-2	88.087	52.087			NaN	NaN	NaN	0	0	Median	4343300	0	4343300	3064	644	2882	6372	13977;13978	13978		2	9606
STSQGSINSPVYSR	0	1	Unmodified	1481.711	0.71103521	45	O14639	ABLIM1	Actin-binding LIM protein 1	yes	yes	0	0	0	3	0			1			15.645	15.645	2	0.0024585	7713	DP1063-3	108.9	72.569			NaN	NaN	NaN	0	0	Median	4025400	0	4025400	3065	45	2883	6373	13979;13980	13979		2	9606
STSSFSCLSR	0	1	Unmodified	1130.5026	0.50262234	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	1	1		1			16.286	16.286	2	0.0033947	6005	DP1063-1	107.69	62.358		+	NaN	NaN	NaN	0	0	Median	30669000	30669000	0	3066	22	2884	6374;6375	13981;13982;13983	13982		3	9606
STTTGHLIYK	1	0	Unmodified	1119.5924	0.59242362	412	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3.25	1.48	1		1	1	1	14.337	14.337	2	0.0015664	3848	DP1063-1	109.71	59.674			2.3326	1.89	7.623	4	0	Median	162900000	47590000	115310000	3067	412	2885	6376;6377;6378;6379	13984;13985;13986;13987;13988;13989;13990;13991;13992;13993;13994;13995;13996;13997	13984		14	9606
STVAQLVK	1	0	Unmodified	844.50182	0.5018177	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			15.898	15.898	2	0.014105	8033	DP1063-3	104.37	61.451			1.6297	1.3087	NaN	1	0	Median	61726000	22988000	38737000	3068	207	2886	6380	13998	13998		1	9606
STVLTPMFVETQASQGTLQTR	0	1	Oxidation (M)	2310.1526	0.15256084	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.069	20.069	2	7.368E-09	10436	DP1063-1	183	135.93			NaN	NaN	NaN	0	0	Median	2968900	0	2968900	3069	420	2887	6381	13999;14000;14001;14002	14000	531	4	9606
STVVPVPYEK	1	0	Unmodified	1117.6019	0.60192568	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				17.33	17.33	2	0.022206	8478	DP1063-2	71.349	52.246			0.70857	0.5928	NaN	1	0	Median	21727000	13691000	8035700	3070	418	2888	6382	14003;14004;14005	14004		3	9606
SVDETLR	0	1	Unmodified	818.4134	0.41339662	446;462	Q13162;Q06830	PRDX4;PRDX1	Peroxiredoxin-4;Peroxiredoxin-1	no	no	0	0	0	5	0					3	14.3	14.3	2	0.0030525	6246	DP1063-5	143.02	52.649			NaN	NaN	NaN	0	0	Median	47096000	0	47096000	3071	462;446	2889	6383;6384;6385	14006;14007;14008;14009	14009		4	9606
SVETDSSTVEHVR	0	1	Unmodified	1444.6794	0.67940073	581	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	2	0		2				14.484	14.484	2;3	0.0011551	4727	DP1063-2	106.62	43.402			1.3888	1.0091	NaN	1	0	Median	14057000	7014200	7042700	3072	581	2890	6386;6387	14010;14011;14012	14012		3	9606
SVETLKEMIK	2	0	Oxidation (M)	1192.6373	0.6373249	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	1	1	3	0			1			15.398	15.398	2	5.518E-06	7362	DP1063-3	131.62	103.4			2.5555	2.2928	NaN	1	0	Median	12330000	3008900	9321000	3073	168	2891	6388	14013;14014;14015	14013	215	3	9606
SVGDGETVEFDVVEGEK	1	0	Unmodified	1794.816	0.81595379	410	P67809	YBX1	Nuclease-sensitive element-binding protein 1	no	no	0	0	0	4	0				2		19.841	19.841	2	1.0658E-05	12797	DP1063-4	167.73	138.92			1.9326	1.3377	NaN	1	0	Median	26710000	7482600	19227000	3074	410	2892	6389;6390	14016;14017	14016		2	9606
SVGDNSSDLSNVAVIDGNR	0	1	Unmodified	1917.9028	0.90281174	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				18.741	18.741	2	1.8098E-07	10375	DP1063-2	188.63	144.12			NaN	NaN	NaN	0	0	Median	12102000	0	12102000	3075	82	2893	6391	14018;14019;14020	14018		3	9606
SVGELPSTVESLQK	1	0	Unmodified	1472.7722	0.77223848	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.617	18.617	2	0.00054784	11751	DP1063-3	156.01	99.381			1.2666	1.017	NaN	1	0	Median	42247000	18306000	23940000	3076	449	2894	6392	14021;14022;14023	14021		3	9606
SVGFIGAGQLAYALAR	0	1	Acetyl (Protein N-term)	1634.878	0.87804096	577	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	1	0	0	4	0				1		25.952	25.952	2	0.0001962	20189	DP1063-4	138.75	101.77			NaN	NaN	NaN	0	0	Median	1529100	0	1529100	3077	577	2895	6393	14024;14025	14024		2	9606
SVHCQAGDTVGEGDLLVELE	0	0	Unmodified	2126.979	0.97901315	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		21.666	21.666	2	1.3186999999999999E-28	15829	DP1063-3	243.3	188.04			NaN	NaN	NaN	0	0	Median	0	0	0	3078	110	2896	6394;6395;6396	14026;14027;14028;14029;14030;14031;14032	14028		7	9606
SVHSSVPLLNSK	1	0	Unmodified	1266.6932	0.6932003	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.8	0.748	2	2	1			16.048	16.048	2;3	0.00022096	6735	DP1063-2	161.51	132.94			1.2078	1.0605	21.879	5	0	Median	282060000	128210000	153850000	3079	460	2897	6397;6398;6399;6400;6401	14033;14034;14035;14036;14037;14038;14039;14040;14041;14042;14043;14044;14045;14046;14047	14044		15	9606
SVHSSVPLLNSKDPIDR	1	1	Unmodified	1862.985	0.98502522	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.88	0.781	3	3	2			16.951	16.951	2;3;4	6.1983E-22	7095	DP1063-1	214.65	188.36			1.0801	0.99909	6.7307	8	0	Median	680150000	320520000	359630000	3080	460	2898	6402;6403;6404;6405;6406;6407;6408;6409	14048;14049;14050;14051;14052;14053;14054;14055;14056;14057;14058;14059;14060;14061;14062;14063;14064;14065;14066;14067;14068;14069;14070;14071;14072;14073;14074;14075;14076;14077;14078;14079;14080	14053		33	9606
SVILEAFSSPSEEVK	1	0	Unmodified	1620.8247	0.82466798	548	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				20.68	20.68	2	0.00046764	13057	DP1063-2	140.14	76.517			NaN	NaN	NaN	0	0	Median	7820400	0	7820400	3081	548	2899	6410	14081	14081		1	9606
SVLGDVGITEVFSDR	0	1	Unmodified	1592.8046	0.80460124	21	CON__P34955			yes	yes	0	0	0	2.5	0.5		1	1			22.568	22.568	2	0.00017786	17028	DP1063-3	161.93	120.39		+	NaN	NaN	NaN	0	0	Median	26883000	26883000	0	3082	21	2900	6411;6412	14082;14083;14084	14083		3	
SVLGGQDQLR	0	1	Unmodified	1071.5673	0.5672715	610	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	4	0				1		16.338	16.338	2	0.0095461	8407	DP1063-4	96.331	42.174			NaN	NaN	NaN	0	0	Median	2368400	0	2368400	3083	610	2901	6413	14085	14085		1	9606
SVLQPSQQK	1	0	Unmodified	1013.5506	0.55055881	666	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	2	0		1				13.839	13.839	2	0.0075931	3895	DP1063-2	98.629	61.47			1.1784	0.98586	NaN	1	0	Median	14666000	6707400	7958400	3084	666	2902	6414	14086;14087	14086		2	9606
SVNELIYK	1	0	Unmodified	964.52295	0.52294707	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		17.241	17.241	2	0.047392	9482	DP1063-4	75.854	25.223			1.3756	0.95212	NaN	1	0	Median	14499000	5559000	8939600	3085	182	2903	6415	14088;14089	14089		2	9606
SVNSAGLHTVQR	0	1	Unmodified	1267.6633	0.66329715	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		2				13.734	13.734	2;3	0.00063573	3797	DP1063-2	117.79	80.448			NaN	NaN	NaN	0	0	Median	16069000	0	16069000	3086	558	2904	6416;6417	14090;14091;14092;14093	14090		4	9606
SVPAFIDISEEDQAAELR	0	1	Acetyl (Protein N-term)	2030.9797	0.97966507	542	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	1	0	0	4	0				2		25.006	25.006	2	0.00019427	19314	DP1063-4	121.18	81.069			NaN	NaN	NaN	0	0	Median	3646000	0	3646000	3087	542	2905	6418;6419	14094;14095;14096	14095		3	9606
SVPTSTVFYPSDGVATEK	1	0	Unmodified	1883.9153	0.9152739	227	P29401	TKT	Transketolase	yes	yes	0	0	0	3	0			1			18.961	18.961	2	0.00025666	12193	DP1063-3	82.908	68.032			1.953	1.5683	NaN	1	0	Median	18813000	6100000	12713000	3088	227	2906	6420	14097;14098	14097		2	9606
SVQTTLQTDEVK	1	0	Unmodified	1347.6882	0.6881745	72	O94905;O75477	ERLIN2;ERLIN1	Erlin-2;Erlin-1	yes	no	0	0	0	4	0				1		16.226	16.226	2	0.00055869	8231	DP1063-4	128.91	87.457			2.5037	1.733	NaN	1	0	Median	7107600	2299000	4808700	3089	72	2907	6421	14099;14100;14101;14102	14101		4	9606
SVTCTYSPALNK	1	0	Unmodified	1339.6442	0.6442012	103	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	4	0				1		16.1	16.1	2	0.029804	8071	DP1063-4	79.974	40.427			NaN	NaN	NaN	0	0	Median	3833900	0	3833900	3090	103	2908	6422	14103	14103		1	9606
SVTDCTSNFCLFQSNSK	1	0	Unmodified	1993.851	0.85097586	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	0	2	0		2				20.096	20.096	2	0.0021065	12265	DP1063-2	144.27	107.28		+	NaN	NaN	NaN	0	0	Median	6522400	6522400	0	3091	23	2909	6423;6424	14104;14105	14104		2	
SVTEQGAELSNEER	0	1	Unmodified	1547.7063	0.70634376	404	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4.5	0.5				1	1	15.437	15.437	2	2.3392E-39	7188	DP1063-4	252.97	191.01			3.038	2.1297	2.9115	2	0	Median	39932000	10657000	29275000	3092	404	2910	6425;6426	14106;14107;14108;14109;14110;14111;14112;14113;14114	14107		9	9606
SVTNEDVTQEELGGAK	1	0	Unmodified	1675.7901	0.79007339	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	16.624	16.624	2	5.4992E-84	8953	DP1063-3	288.15	288.15			1.477	1.1834	10.161	3	0	Plateau	698590000	278830000	419770000	3093	111	2911	6427;6428;6429	14115;14116;14117;14118;14119;14120;14121;14122;14123	14116		9	9606
SVVEFLQGYIGVPHGGFPEPFR	0	1	Unmodified	2431.2325	0.23246614	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		2	2	2		24.02	24.02	2;3	8.149299999999999E-96	17328	DP1063-2	293.77	293.77			1.0506	0.73365	15.753	5	0	Median	200470000	97532000	102930000	3094	154	2912	6430;6431;6432;6433;6434;6435	14124;14125;14126;14127;14128;14129;14130;14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146	14130		23	9606
SVVLQLADGQIFK	1	0	Unmodified	1416.7977	0.79766537	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				21.876	21.876	2	0.050667	14630	DP1063-2	73.781	38.24			NaN	NaN	NaN	0	0	Median	7612500	0	7612500	3095	82	2913	6436	14147	14147		1	9606
SVVTVIDVFYK	1	0	Unmodified	1268.7016	0.70163972	29	CON__Q5D862;Q5D862	FLG2	Filaggrin-2	yes	no	0	0	0	5	0					1	22.631	22.631	2	0.028318	16552	DP1063-5	96.143	52.701		+	NaN	NaN	NaN	0	0	Median	2024200	2024200	0	3096	29	2914	6437	14148;14149	14148		2	9606
SYCAEIAHNVSSK	1	0	Unmodified	1464.6667	0.66672755	398	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					2	15.513	15.513	2;3	1.9497E-05	7693	DP1063-5	163.45	140.13			1.6318	1.3813	8.1849	2	0	Median	31895000	13634000	18260000	3097	398	2915	6438;6439	14150;14151;14152;14153;14154;14155;14156	14153		7	9606
SYDKPAVDDDDEGMETLEEDTEESSR	1	1	Oxidation (M)	2977.1778	0.17784471	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	1	1	2	0		1				17.394	17.394	3	0.0028215	8564	DP1063-2	83.362	69.917			NaN	NaN	NaN	0	0	Median	0	0	0	3098	558	2916	6440	14157	14157	686	1	9606
SYDVPPPPMEPDHPFYSNISK	1	0	Oxidation (M)	2432.0995	0.099462633	185	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	0	1	0	5	0					1	18.584	18.584	3	0.037496	11550	DP1063-5	60.032	38.433			NaN	NaN	NaN	0	0	Median	7676000	0	7676000	3099	185	2917	6441	14158	14158	236	1	9606
SYELPDGQVITIGNER	0	1	Unmodified	1789.8846	0.88464248	349;409;411;528	P60709;Q6S8J3;A5A3E0;Q9BYX7;P63261;P68133;P68032;P63267;P62736;Q562R1	ACTB;POTEE;POTEF;POTEKP;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2	no	no	0	0	0	4	0				12		23.198	23.198	2;3	1.847E-05	13505	DP1063-4	168.98	149.24			2.5346	1.9341	23.027	2	0	Median	179490000	51468000	128020000	3100	349;409;411;528	2918	6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453	14159;14160;14161;14162;14163;14164;14165;14166;14167;14168;14169;14170;14171;14172;14173;14174;14175;14176;14177;14178	14161		20	9606
SYGPAPGAGHVQEESNLSLQALESR	0	1	Unmodified	2596.2518	0.25175761	461	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	4	0				1		19.117	19.117	3	4.8544E-11	12006	DP1063-4	106.72	87.95			1.4754	0.92749	NaN	1	0	Median	10827000	4018900	6808000	3101	461	2919	6454	14179;14180	14179		2	9606
SYIEYQLTPTNTNR	0	1	Unmodified	1698.8213	0.82131394	679	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	3	0			2			18.595	18.595	2	0.00065367	11721	DP1063-3	125.74	84.341			NaN	NaN	NaN	0	0	Median	8199700	0	8199700	3102	679	2920	6455;6456	14181;14182	14181		2	9606
SYLNMDAIMEAIK	1	0	2 Oxidation (M)	1529.7106	0.7105662	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	0	3	0			1			19.437	19.437	2	0.00024298	12904	DP1063-3	107.06	44.592			1.3949	1.1201	NaN	1	0	Median	57582000	22600000	34982000	3103	110	2921	6457	14183;14184;14185;14186	14186	92;93	4	9606
SYLNMDAIMEAIKK	2	0	2 Oxidation (M)	1657.8055	0.80552922	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	1	3	0.632		1	3	1		18.207	18.207	2;3	0.00055397	11145	DP1063-3	96.464	79.935			1.5024	1.3909	5.3914	2	0	Median	141190000	34694000	106490000	3104	110	2922	6458;6459;6460;6461;6462	14187;14188;14189;14190;14191;14192;14193;14194;14195	14190	92;93	9	9606
SYLNMDAIMEAIKK	2	0	Oxidation (M)	1641.8106	0.8106146	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			1			20.385	20.385	3	0.0267	14233	DP1063-3	45.722	34.283			1.1611	1.0418	NaN	1	0	Median	18962000	9238300	9724100	3105	110	2922	6463	14196	14196	92;93	1	9606
SYLNMDAIMEAIKK	2	0	Unmodified	1625.8157	0.81569997	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			22.159	22.159	2	0.0011996	16553	DP1063-3	90.434	90.434			1.081	0.96993	NaN	1	0	Median	11017000	5246900	5770000	3106	110	2922	6464	14197	14197		1	9606
SYSEDDIHR	0	1	Unmodified	1120.4785	0.47851608	676	Q9Y5A9;Q9BYJ9;Q7Z739	YTHDF2;YTHDF1;YTHDF3	YTH domain-containing family protein 2;YTH domain-containing family protein 1;YTH domain-containing family protein 3	yes	no	0	0	0	3	0			1			13.99	13.99	2	0.0012605	5485	DP1063-3	123.98	101.2			NaN	NaN	NaN	0	0	Median	4275800	0	4275800	3107	676	2923	6465	14198	14198		1	9606
SYSSGGEDGYVR	0	1	Unmodified	1275.5368	0.53675924	469	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				1		15.103	15.103	2	0.0053787	6690	DP1063-4	94.297	94.297			2.7414	1.6991	NaN	1	0	Median	9687700	2540800	7146900	3108	469	2924	6466	14199;14200	14199		2	9606
TAAENDFVTLK	1	0	Unmodified	1207.6085	0.60846762	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			2			18.096	18.096	2	0.027044	11008	DP1063-3	82.831	41.837		+	NaN	NaN	NaN	0	0	Median	0	0	0	3109	22	2925	6467;6468	14201;14202	14201		2	9606
TAAENDFVTLKK	2	0	Unmodified	1335.7034	0.70343063	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2.25	0.829	1	1	2			16.132	16.132	2;3	0.00029153	8313	DP1063-3	125.36	51.458		+	NaN	NaN	NaN	0	0	Median	75315000	75315000	0	3110	22	2926	6469;6470;6471;6472	14203;14204;14205;14206;14207;14208;14209	14207		7	9606
TAEEVAALIR	0	1	Unmodified	1071.5924	0.59242362	536	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					18.874	18.874	2	0.0071148	8982	DP1063-1	90.601	47.355			1.7097	1.3868	NaN	1	0	Median	4216000	1463300	2752600	3111	536	2927	6473	14210	14210		1	9606
TAENATSGETLEENEAGD	0	0	Unmodified	1836.7497	0.74972472	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	4	0				1		16.662	16.662	2	0.0021657	8704	DP1063-4	154.28	111.47			NaN	NaN	NaN	0	0	Median	0	0	0	3112	659	2928	6474	14211;14212	14211		2	9606
TAGTLFGEGFR	0	1	Unmodified	1154.572	0.57202253	634	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			1			19.801	19.801	2	0.0013752	13434	DP1063-3	112.11	94.867			2.2752	1.6595	NaN	1	0	Median	22841000	6854200	15987000	3113	634	2929	6475	14213;14214	14213		2	9606
TALALAIAQELGSK	1	0	Unmodified	1384.7926	0.79257999	662	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	3	0			1			22.584	22.584	2	0.0013022	17083	DP1063-3	117.95	66.421			NaN	NaN	NaN	0	0	Median	6481700	0	6481700	3114	662	2930	6476	14215;14216	14215		2	9606
TALIHDGLAR	0	1	Unmodified	1065.5931	0.59309232	206	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	15.559	15.559	2	0.026562	7769	DP1063-5	66.962	45.434			1.9727	1.4733	NaN	1	0	Median	11102000	3442900	7658800	3115	206	2931	6477	14217	14217		1	9606
TALLDAAGVASLLTTAEVVVTEIPK	1	0	Unmodified	2481.3942	0.39417132	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3.71	1.03		1	2	2	2	29.545	29.545	2;3	0.00055348	23285	DP1063-4	84.318	75.066			NaN	NaN	NaN	0	0	Median	7781500	7781500	0	3116	151	2932	6478;6479;6480;6481;6482;6483;6484	14218;14219;14220;14221;14222;14223;14224;14225;14226	14224		9	9606
TALLGGGQR	0	1	Unmodified	871.48756	0.48756462	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	15.03	15.03	2	0.0026331	6853	DP1063-3	116.54	53.828			1.5552	1.4296	11.162	3	0	Plateau	517920000	200690000	317230000	3117	111	2933	6485;6486;6487	14227;14228;14229;14230;14231;14232;14233;14234;14235;14236;14237	14228		11	9606
TALVANTSNMPVAAR	0	1	Oxidation (M)	1530.7824	0.78242601	262	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	1	0	3	0			1			15.611	15.611	2	0.012629	7677	DP1063-3	93.839	32.246			NaN	NaN	NaN	0	0	Median	4727800	0	4727800	3118	262	2934	6488	14238;14239	14238	314	2	9606
TAQEVETYRR	0	2	Unmodified	1251.6208	0.62076364	178	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			1			13.408	13.408	3	0.01651	4820	DP1063-3	51.528	27.296			2.1081	1.9274	NaN	1	0	Median	9639600	2689100	6950400	3119	178	2935	6489	14240;14241	14241		2	9606
TAQIMFQAYGDK	1	0	Oxidation (M)	1387.6442	0.6442012	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				17.786	17.786	2	5.981E-05	7589	DP1063-1	158.08	158.08			1.3607	1.2315	12.943	2	0	Median	411710000	167810000	243900000	3120	460	2936	6490;6491	14242;14243;14244;14245;14246;14247;14248;14249;14250;14251;14252;14253	14245	601	12	9606
TAQIMFQAYGDK	1	0	Unmodified	1371.6493	0.64928657	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.873	18.873	2	8.7735E-06	8974	DP1063-1	170.89	170.89			1.3051	1.1428	21.269	2	0	Median	144500000	62158000	82340000	3121	460	2936	6492;6493	14254;14255;14256;14257;14258;14259	14257		6	9606
TASGSSVTSLDGTR	0	1	Unmodified	1337.6423	0.64228694	565	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	4	0				1		15.3	15.3	2	0.0029447	7004	DP1063-4	97.911	64.823			2.3854	1.6154	NaN	1	0	Median	4965400	1387600	3577900	3122	565	2937	6494	14260	14260		1	9606
TATESFASDPILYRPVAVALDTK	1	1	Unmodified	2464.285	0.28495522	168	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	3	0			2			21.631	21.631	2;3	1.6411E-08	15831	DP1063-3	155.53	155.53			1.9828	1.7984	NaN	1	0	Median	40806000	14868000	25938000	3123	168	2938	6495;6496	14261;14262;14263;14264;14265	14261		5	9606
TATLRPYLSAVR	0	2	Acetyl (Protein N-term)	1388.7776	0.77759863	346	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	1	0	1	5	0					1	20.346	20.346	2	0.001832	13785	DP1063-5	140.49	87.158			2.0215	1.7202	NaN	1	0	Median	11357000	3916200	7440300	3124	346	2939	6497	14266;14267	14266		2	9606
TATPQQAQEVHEK	1	0	Unmodified	1465.7161	0.71612058	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					2	12.762	12.762	2;3	0.00014165	4510	DP1063-5	134.56	103.7			2.1912	1.8548	NaN	1	0	Median	24939000	6793900	18146000	3125	347	2940	6498;6499	14268;14269;14270;14271;14272	14269		5	9606
TATQLAVNK	1	0	Unmodified	944.5291	0.52909508	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			13.985	13.985	2	0.0040011	5461	DP1063-3	111.01	58.222			3.8893	3.1231	NaN	1	0	Median	42193000	9424100	32769000	3126	601	2941	6500	14273;14274	14273		2	9606
TAVAPIER	0	1	Unmodified	855.48142	0.48141661	108;159;158	P05141;Q9H0C2;P12235;P12236	SLC25A5;SLC25A31;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	2.5	1.5	1			1		14.626	14.626	2	0.0078293	5990	DP1063-4	116.73	84.371			1.643	1.3654	5.4921	2	0	Median	121130000	46999000	74128000	3127	108;158;159	2942	6501;6502	14275;14276;14277;14278;14279;14280	14278		6	9606
TAVCDIPPR	0	1	Unmodified	1027.5121	0.51206481	414;129;480	P07437;A6NNZ2;P68371;P04350;Q3ZCM7;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	4	0.707			1	2	1	15.118	15.118	2	0.0034687	6876	DP1063-3	112.84	88.023			1.9532	1.4587	24.867	3	0	Median	85759000	29099000	56660000	3128	129;414;480	2943	6503;6504;6505;6506	14281;14282;14283;14284;14285;14286;14287;14288;14289	14281		9	9606
TAVDSLVAYSVK	1	0	Unmodified	1251.6711	0.67106787	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			19.395	19.395	2	0.007975	12888	DP1063-3	90.05	73.333			1.4773	1.1863	NaN	1	0	Median	23647000	8938900	14708000	3129	449	2944	6507	14290;14291	14291		2	9606
TAVETAVLLLR	0	1	Unmodified	1184.7129	0.71287311	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			21.456	21.456	2	3.3419E-06	15592	DP1063-3	152.34	112.79			NaN	NaN	NaN	0	0	Median	31538000	0	31538000	3130	304	2945	6508	14292;14293	14292		2	9606
TAVVVGTITDDVR	0	1	Unmodified	1344.7249	0.72489436	447	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	18.45	18.45	2	2.7287E-06	11372	DP1063-5	176.48	137.73			1.773	1.3242	NaN	1	0	Median	47568000	15825000	31743000	3131	447	2946	6509	14294;14295;14296	14295		3	9606
TCTTVAFTQVNSEDKGALAK	2	0	Unmodified	2140.047	0.047033132	382	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		17.139	17.139	3	4.2036E-05	9345	DP1063-4	141.13	115.17			1.8033	1.8728	NaN	1	0	Median	8234100	3176200	5058000	3132	382	2947	6510	14297;14298	14298		2	9606
TCVADESHAGCEK	1	0	Unmodified	1462.5817	0.58167729	14	CON__P02769			yes	yes	0	0	0	2.78	1.31	2	2	2	2	1	12.689	12.689	2;3	3.053E-17	3886	DP1063-3	223.87	223.87		+	NaN	NaN	NaN	0	0	Median	589130000	589130000	0	3133	14	2948	6511;6512;6513;6514;6515;6516;6517;6518;6519	14299;14300;14301;14302;14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313;14314;14315;14316;14317;14318	14310		20	9606
TCVFEKENDPSVMR	1	1	Oxidation (M)	1726.7655	0.76545532	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	2	2				15.428	15.428	2;3	7.2824E-06	5023	DP1063-1	166.45	126.29			1.1869	1.1181	2.4779	4	0	Median	206290000	92806000	113480000	3134	460	2949	6520;6521;6522;6523	14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332	14325	568	14	9606
TCVFEKENDPSVMR	1	1	Unmodified	1710.7705	0.7705407	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	3					16.539	16.539	2;3	1.4676E-05	6260	DP1063-1	155.99	103.82			NaN	NaN	NaN	0	0	Median	26327000	0	26327000	3135	460	2949	6524;6525;6526	14333;14334;14335;14336	14336		4	9606
TDAAVSFAK	1	0	Acetyl (Protein N-term)	950.47091	0.4709115	108	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	3.33	1.7	1			1	1	18.954	18.954	1;2	0.00821	11771	DP1063-4	111.95	68.139			1.7462	1.281	8.6625	2	0	Median	46398000	16763000	29635000	3136	108	2950	6527;6528;6529	14337;14338;14339;14340;14341;14342	14339		5	9606
TDCDIEDDR	0	1	Unmodified	1137.4244	0.42443159	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.456	14.456	2	1.4202E-12	3884	DP1063-1	185.55	171.97			1.3376	1.1421	NaN	1	0	Median	34652000	14668000	19983000	3137	460	2951	6530	14343;14344;14345;14346	14343		4	9606
TDCDIEDDRLAAMFR	0	2	Oxidation (M)	1842.7876	0.78764732	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.4	0.49	3	2				19.002	19.002	2;3	0.00045648	8645	DP1063-1	89.44	80.891			1.362	1.2683	5.3861	5	0	Median	620620000	259620000	361000000	3138	460	2952	6531;6532;6533;6534;6535	14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363	14347	602	17	9606
TDCDIEDDRLAAMFR	0	2	Unmodified	1826.7927	0.7927327	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				20.541	20.541	2;3	0.0005286	11012	DP1063-1	124.6	100.99			1.2831	1.1794	20.346	3	0	Median	168430000	68768000	99657000	3139	460	2952	6536;6537;6538	14364;14365;14366;14367;14368;14369;14370;14371;14372;14373	14368		10	9606
TDCNHIFLNFVPTVIMDPSK	1	0	Oxidation (M)	2363.129	0.12898862	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	2	2				22.515	22.515	2;3	1.3711E-17	13328	DP1063-1	205.12	205.12			1.0906	0.97358	3.1593	3	0	Plateau	98488000	47001000	51487000	3140	460	2953	6539;6540;6541;6542	14374;14375;14376;14377;14378;14379;14380;14381;14382;14383;14384	14380	603	11	9606
TDCNHIFLNFVPTVIMDPSK	1	0	Unmodified	2347.1341	0.134074	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					23.536	23.536	2;3	2.7383E-05	14430	DP1063-1	93.776	93.776			1.0141	0.80382	NaN	1	0	Median	10526000	5098300	5427400	3141	460	2953	6543;6544	14385;14386;14387;14388;14389;14390	14389		6	9606
TDCNHIFLNFVPTVIMDPSKIEESVR	1	1	Oxidation (M)	3076.4998	0.49979215	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2	0		1				22.675	22.675	4	2.9987E-11	15614	DP1063-2	106.88	88.877			0.97652	0.91991	NaN	1	0	Median	24627000	10658000	13969000	3142	460	2954	6545	14391;14392	14392	603	2	9606
TDDEVVQREEEAIQLDGLNASQIR	0	2	Unmodified	2727.3311	0.33113014	169	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	2	0		2				21.015	21.015	3	7.1753E-08	13515	DP1063-2	138.77	111.49			1.1088	1.0325	NaN	1	0	Median	19322000	10128000	9194200	3143	169	2955	6546;6547	14393;14394;14395;14396	14394		4	9606
TDEGIAYR	0	1	Unmodified	923.43486	0.43486035	241	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	5	0					1	15.029	15.029	2	0.0085224	7174	DP1063-5	107.43	55.642			NaN	NaN	NaN	0	0	Median	7162400	0	7162400	3144	241	2956	6548	14397;14398	14397		2	9606
TDFFIGGEEGMAEK	1	0	Oxidation (M)	1545.6657	0.6657245	663	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	1	0	4	0				1		19.136	19.136	2	0.0045744	12078	DP1063-4	103.43	72.144			NaN	NaN	NaN	0	0	Median	4794100	0	4794100	3145	663	2957	6549	14399	14399	771	1	9606
TDFGIFR	0	1	Unmodified	854.42865	0.42865276	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.131	20.131	2	0.01159	13809	DP1063-3	124.32	97.007			1.5574	1.2562	19.282	2	0	Median	513520000	198920000	314600000	3146	624	2958	6550;6551	14400;14401;14402;14403;14404;14405;14406	14403		7	9606
TDITYPAGFMDVISIDK	1	0	Oxidation (M)	1900.9128	0.91283106	383	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	4	0				1		22.033	22.033	2	0.000616	15742	DP1063-4	121.04	91.7			1.3328	0.92252	NaN	1	0	Median	9301500	4638700	4662800	3147	383	2959	6552	14407;14408;14409	14407	474	3	9606
TDKVFEVMLATDR	1	1	Oxidation (M)	1539.7603	0.76029359	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	5	0					1	17.994	17.994	3	0.0038351	10762	DP1063-5	67.136	48.723			1.2933	1.1026	NaN	1	0	Median	16915000	7585500	9329400	3148	192	2960	6553	14410;14411	14410	244	2	9606
TDLLLEPYNK	1	0	Unmodified	1204.634	0.63395408	252	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	2					19.497	19.497	2	0.036587	9723	DP1063-1	85.731	41.336			NaN	NaN	NaN	0	0	Median	0	0	0	3149	252	2961	6554;6555	14412;14413	14413		2	9606
TDLNPDNLQGGDDLDPNYVLSSR	0	1	Unmodified	2517.1619	0.16193955	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		21.217	21.217	2	1.9911E-14	14753	DP1063-4	197.29	151.46			NaN	NaN	NaN	0	0	Median	4355500	0	4355500	3150	162	2962	6556	14414;14415	14414		2	9606
TDMDNQIVVSDYAQMDR	0	1	Oxidation (M)	2015.8565	0.85645517	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	3	0			1			19.174	19.174	2	0.011663	12531	DP1063-3	128.76	94.58			NaN	NaN	NaN	0	0	Median	0	0	0	3151	320	2963	6557	14416	14416	387	1	9606
TDPTTLTDEEINR	0	1	Unmodified	1503.7053	0.70528113	155	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	2	0		1				17.563	17.563	2	0.035942	8872	DP1063-2	78.342	16.383			NaN	NaN	NaN	0	0	Median	4057500	0	4057500	3152	155	2964	6558	14417	14417		1	9606
TDYNASVSVPDSSGPER	0	1	Unmodified	1779.7911	0.79113602	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.33	0.471			2	1		16.87	16.87	2	3.1056E-17	9349	DP1063-3	197.36	160.68			2.4383	1.8275	NaN	1	0	Median	39320000	10031000	29289000	3153	362	2965	6559;6560;6561	14418;14419;14420;14421;14422;14423	14421		6	9606
TEADAEKTFEEK	2	0	Unmodified	1396.6358	0.63580458	187	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				14.795	14.795	2	0.00035994	5111	DP1063-2	143	98.571			NaN	NaN	NaN	0	0	Median	7077400	0	7077400	3154	187	2966	6562	14424;14425	14424		2	9606
TEALTQAFR	0	1	Unmodified	1035.5349	0.53490874	660	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	3	0			1			17.54	17.54	2	0.014052	10271	DP1063-3	95.815	18.141			NaN	NaN	NaN	0	0	Median	13418000	0	13418000	3155	660	2967	6563	14426	14426		1	9606
TEEGPTLSYGR	0	1	Unmodified	1208.5673	0.56733108	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		2				16.428	16.428	2	0.0015693	7332	DP1063-2	125.71	71.938			NaN	NaN	NaN	0	0	Median	0	0	0	3156	281	2968	6564;6565	14427;14428	14428		2	9606
TEIIILATR	0	1	Unmodified	1028.623	0.62299547	200	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4.5	0.5				1	1	19.478	19.478	2	8.464699999999999E-22	12509	DP1063-4	209.87	175.05			2.1573	1.677	7.1952	2	0	Median	97515000	30929000	66585000	3157	200	2969	6566;6567	14429;14430;14431;14432;14433	14430		5	9606
TEMDWVLK	1	0	Oxidation (M)	1036.4899	0.48993238	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				1		18.389	18.389	2	0.026783	11064	DP1063-4	75.213	57.827			2.4019	1.6625	NaN	1	0	Median	7799300	2444600	5354700	3158	327	2970	6568	14434;14435	14434	417	2	9606
TEMEDLMSSKDDVGK	2	0	2 Oxidation (M)	1715.723	0.72298138	252	P35579	MYH9	Myosin-9	yes	yes	0	2	1	1	0	1					14.071	14.071	3	0.0014793	3496	DP1063-1	71.529	71.529			2.5337	2.5464	NaN	1	0	Median	2911600	817000	2094600	3159	252	2971	6569	14436	14436	302;303	1	9606
TEPTAQQNLALQLAEK	1	0	Unmodified	1753.921	0.92102798	5	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	2	0		1				19.136	19.136	2	0.00075851	10900	DP1063-2	138.2	99.625			NaN	NaN	NaN	0	0	Median	9184800	0	9184800	3160	5	2972	6570	14437;14438	14437		2	9606
TEQAISFAK	1	0	Acetyl (Protein N-term)	1035.5237	0.52367535	159	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	4	0				1		19.574	19.574	2	0.013831	12646	DP1063-4	75.378	43.023			1.877	1.2992	NaN	1	0	Median	11383000	4221400	7161200	3161	159	2973	6571	14439	14439		0	9606
TEQGTVLIGSEHGLIEVDPVSR	0	1	Unmodified	2335.202	0.20195387	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				19.969	19.969	3	0.0013704	12118	DP1063-2	89.816	54.725			NaN	NaN	NaN	0	0	Median	14896000	0	14896000	3162	82	2974	6572	14440	14440		1	9606
TEQMTLR	0	1	Acetyl (Protein N-term);Oxidation (M)	935.43823	0.43823117	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	1	1	0	4	0				1		15.444	15.444	2	0.0096034	7191	DP1063-4	81.635	53.212			2.4458	1.5019	NaN	1	0	Median	9008300	2479700	6528700	3163	408	2975	6573	14441;14442	14441	500	2	9606
TERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTR	0	2	Oxidation (M)	3588.7115	0.7114525	469	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	1	1	4	0				1		18.06	18.06	4	2.4071E-10	10552	DP1063-4	98.085	82.654			NaN	NaN	NaN	0	0	Median	10034000	0	10034000	3164	469	2976	6574	14443;14444	14444	614	2	9606
TESAVSQMQSVIELGR	0	1	Oxidation (M)	1749.8567	0.85671317	274	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	2	0		1				18.193	18.193	2	0.00031116	9663	DP1063-2	132.79	98.92			NaN	NaN	NaN	0	0	Median	8227800	0	8227800	3165	274	2977	6575	14445;14446	14445	329	2	9606
TEWETAAPAVAETPDIK	1	0	Acetyl (Protein N-term)	1869.8996	0.89962384	292	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	0	0	5	0					1	21.904	21.904	2	0.0011696	15709	DP1063-5	152.4	152.4			1.7024	1.4411	NaN	1	0	Median	15318000	5949400	9368700	3166	292	2978	6576	14447;14448;14449;14450	14449		4	9606
TEYLSNADER	0	1	Unmodified	1196.5309	0.53094558	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					15.354	15.354	2	0.0084616	4936	DP1063-1	87.806	54.914			2.0835	1.6427	NaN	1	0	Median	6979800	1730900	5248900	3167	487	2979	6577	14451	14451		1	9606
TFCQLILDPIFK	1	0	Unmodified	1493.7952	0.79522253	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				24.03	24.03	2	0.0007794	17290	DP1063-2	119.22	119.22			2.3943	2.0032	NaN	1	0	Median	27819000	9043300	18775000	3168	165	2980	6578	14452;14453;14454;14455	14452		4	9606
TFEDFVR	0	1	Unmodified	912.43413	0.43413207	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.865	18.865	2	0.001455	8907	DP1063-1	137.83	105.72			1.3095	1.2244	18.832	2	0	Median	747980000	316910000	431070000	3169	460	2981	6579;6580	14456;14457;14458;14459;14460;14461;14462;14463	14457		8	9606
TFEINPR	0	1	Unmodified	875.45012	0.45011648	169	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	2	0		1				16.712	16.712	2	0.056541	7691	DP1063-2	86.866	50.681			NaN	NaN	NaN	0	0	Median	10146000	0	10146000	3170	169	2982	6581	14464	14464		1	9606
TFIAIKPDGVQR	1	1	Unmodified	1343.7561	0.75613491	171;196	P22392;P15531	NME2;NME1	Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A	no	no	0	0	1	5	0					1	17.013	17.013	3	8.1364E-06	9461	DP1063-5	145.23	111.35			NaN	NaN	NaN	0	0	Median	36330000	0	36330000	3171	196;171	2983	6582	14465;14466;14467	14466		3	9606
TFLALINQVFPAEEDSKK	2	0	Unmodified	2049.0783	0.078256906	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		1				23.247	23.247	2	0.0044286	16302	DP1063-2	107.65	75.982			NaN	NaN	NaN	0	0	Median	3943200	0	3943200	3172	654	2984	6583	14468;14469	14468		2	9606
TFLVWVNEEDHLR	0	1	Unmodified	1656.826	0.82600539	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				2		21.015	21.015	3	1.3904E-05	14510	DP1063-4	152.38	128.89			NaN	NaN	NaN	0	0	Median	11216000	0	11216000	3173	162	2985	6584;6585	14470;14471;14472	14470		3	9606
TFNTSTGGLLLPSDTKR	1	1	Unmodified	1806.9476	0.94757708	163	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	3	0			1			18.365	18.365	3	0.00039505	11390	DP1063-3	78.244	78.244			1.8189	1.6498	NaN	1	0	Median	10677000	3033000	7644200	3174	163	2986	6586	14473	14473		1	9606
TFQVLGNLYSEGDCTYLK	1	0	Unmodified	2106.9932	0.99320665	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.83	0.687		2	3	1		22.101	22.101	2	3.1159E-92	14888	DP1063-2	310.68	271.1			NaN	NaN	NaN	0	0	Median	191660000	0	191660000	3175	595	2987	6587;6588;6589;6590;6591;6592	14474;14475;14476;14477;14478;14479;14480;14481;14482;14483;14484	14476		11	9606
TFSDTTHGSVPSDPLGR	0	1	Unmodified	1772.8329	0.83294126	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	2	0		1				17.258	17.258	3	0.022962	8383	DP1063-2	72.11	33.322			NaN	NaN	NaN	0	0	Median	8564900	0	8564900	3176	547	2988	6593	14485	14485		1	9606
TFTDCFNCLPIAAIVDEK	1	0	Unmodified	2112.986	0.98601278	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.15	0.533		1	9	3		25.57	25.57	2;3	0.00014734	18957	DP1063-3	124.45	91.456			54.38	37.641	NaN	1	0	Median	289200000	1127500	288080000	3177	260;365;366	2989	6594;6595;6596;6597;6598;6599;6600;6601;6602;6603;6604;6605;6606	14486;14487;14488;14489;14490;14491;14492;14493;14494;14495;14496;14497;14498;14499;14500;14501;14502;14503;14504;14505	14490		20	9606
TFVLEVMGR	0	1	Oxidation (M)	1066.5481	0.54811597	433	Q01813;P17858;P08237	PFKP;PFKL;PFKM	ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, muscle type	yes	no	0	1	0	2	0		1				18.803	18.803	2	0.056019	10459	DP1063-2	61.962	25.567			1.4966	1.091	NaN	1	0	Median	11739000	4731600	7007100	3178	433	2990	6607	14506	14506		0	9606
TFVNITPAEVGVLVGK	1	0	Unmodified	1642.9294	0.92940782	130	P07737	PFN1	Profilin-1	yes	yes	0	0	0	5	0					1	22.523	22.523	2	0.0015366	16470	DP1063-5	123.84	123.84			2.0174	1.7078	NaN	1	0	Median	14455000	6341500	8113100	3179	130	2991	6608	14507;14508;14509;14510;14511;14512	14509		6	9606
TFVNITPAEVGVLVGKDR	1	1	Unmodified	1914.0575	0.057461884	130	P07737	PFN1	Profilin-1	yes	yes	0	0	1	5	0					1	21.374	21.374	3	0.00052382	15103	DP1063-5	79.92	79.92			2.3116	1.9707	NaN	1	0	Median	6220900	1819000	4401900	3180	130	2992	6609	14513;14514	14514		2	9606
TFYNQAIMSSK	1	0	Oxidation (M)	1304.6071	0.60708741	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		16.753	16.753	2	2.1819E-05	9107	DP1063-3	129.88	113.54			1.4893	1.1103	11.272	2	0	Median	560140000	228530000	331610000	3181	624	2993	6610;6611	14515;14516;14517;14518;14519;14520;14521;14522	14516	754	8	9606
TFYNQAIMSSK	1	0	Unmodified	1288.6122	0.61217279	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.972	17.972	2	5.3121E-06	10811	DP1063-3	151.83	129.98			1.5987	1.2838	NaN	1	0	Median	197090000	76228000	120870000	3182	624	2993	6612	14523;14524;14525	14525		3	9606
TGAAPIIDVVR	0	1	Unmodified	1110.6397	0.63970816	287	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	5	0					1	18.736	18.736	2	2.365E-05	11769	DP1063-5	131.12	95.821			2.1662	1.6178	NaN	1	0	Median	41268000	13253000	28015000	3183	287	2994	6613	14526;14527;14528;14529	14528		4	9606
TGAIVDVPVGEELLGR	0	1	Unmodified	1623.8832	0.88318591	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.735	21.735	2	4.1245E-14	15964	DP1063-3	198.55	166.95			1.334	1.0588	NaN	1	0	Median	68362000	28899000	39463000	3184	207	2995	6614	14530;14531;14532;14533;14534	14531		5	9606
TGCNVLLIQK	1	0	Unmodified	1144.6274	0.62742892	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			17.689	17.689	2	0.0016599	10479	DP1063-3	109.11	81.228			4.228	3.3951	NaN	1	0	Median	20027000	4847300	15180000	3185	320	2996	6615	14535	14535		1	9606
TGDFQLHTNVNDGTEFGGSIYQK	1	0	Unmodified	2527.1615	0.16154562	283	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		19.166	19.166	3	0.02369	12124	DP1063-4	62.064	37.707			NaN	NaN	NaN	0	0	Median	6841400	0	6841400	3186	283	2997	6616	14536	14536		1	9606
TGEAIVDAALSALR	0	1	Unmodified	1385.7514	0.75144346	502	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	4	0				1		23.541	23.541	2	0.002586	17510	DP1063-4	133.05	84.448			1.7659	1.1513	NaN	1	0	Median	6060600	2397400	3663200	3187	502	2998	6617	14537;14538;14539	14537		3	9606
TGEEDEEEFFCNR	0	1	Unmodified	1660.6311	0.63112991	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	0	1					18.977	18.977	2	4.4182E-05	9087	DP1063-1	158.79	144.55			NaN	NaN	NaN	0	0	Median	2249800	0	2249800	3188	314	2999	6618	14540	14540		1	9606
TGFSTSPESPYTHWK	1	0	Unmodified	1723.7842	0.78420015	602	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	4	0				1		17.745	17.745	3	0.0011992	10210	DP1063-4	76.156	61.187			2.0993	1.4531	NaN	1	0	Median	6507400	1865700	4641700	3189	602	3000	6619	14541;14542	14541		2	9606
TGGAYGEDLGADYNLSQVCDGK	1	0	Unmodified	2288.9856	0.98555509	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					19.735	19.735	2	1.0074E-06	10079	DP1063-1	118.47	118.47			3.5753	2.7646	NaN	1	0	Median	6248800	1463500	4785400	3190	303	3001	6620	14543	14543		1	9606
TGGIGDSRPPSFHPHAGGGSQENLDNDTETDSLVSAQR	0	2	Unmodified	3905.7801	0.78007742	573	Q92997	DVL3	Segment polarity protein dishevelled homolog DVL-3	yes	yes	0	0	1	2	0		1				17.177	17.177	4	3.5129E-11	8293	DP1063-2	99.357	84.426			NaN	NaN	NaN	0	0	Median	7799900	0	7799900	3191	573	3002	6621	14544	14544		1	9606
TGQEVVFVAEPDNK	1	0	Unmodified	1531.7518	0.75183739	106	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	1	0	1					17.987	17.987	2	0.00062216	7851	DP1063-1	128.36	78.329			NaN	NaN	NaN	0	0	Median	0	0	0	3192	106	3003	6622	14545	14545		1	9606
TGSNSFTVHPR	0	1	Unmodified	1201.584	0.5839842	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3.17	1.07		2	2	1	1	14.111	14.111	2;3	1.346E-06	4259	DP1063-2	174.02	149.13			81.301	74.089	NaN	1	0	Median	529270000	6350600	522920000	3193	524	3004	6623;6624;6625;6626;6627;6628	14546;14547;14548;14549;14550;14551;14552;14553;14554;14555;14556;14557	14549		12	9606
TGTAEMSSILEER	0	1	Oxidation (M)	1438.661	0.66097347	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			16.6	16.6	2	1.2255E-05	8968	DP1063-3	169.21	156.11			1.6915	1.2854	NaN	1	0	Median	38895000	11958000	26937000	3194	207	3005	6629	14558;14559;14560;14561	14561	263	4	9606
TGTAEMSSILEER	0	1	Unmodified	1422.6661	0.66605885	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			19.053	19.053	2	0.0021699	12376	DP1063-3	109.24	67.235			NaN	NaN	NaN	0	0	Median	10716000	0	10716000	3195	207	3005	6630	14562;14563	14562		2	9606
TGTITTFEHAHNMR	0	1	Oxidation (M)	1630.7522	0.75218852	165	P13639	EEF2	Elongation factor 2	yes	yes	0	1	0	2.5	0.5		1	1			14.293	14.293	3	0.00092061	4532	DP1063-2	86.262	68.756			2.5282	1.9404	NaN	1	0	Median	53174000	12447000	40726000	3196	165	3006	6631;6632	14564;14565;14566;14567;14568;14569	14568	210	6	9606
TGTITTFEHAHNMR	0	1	Unmodified	1614.7573	0.75727389	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				15.359	15.359	3	0.00029125	5831	DP1063-2	138.89	102.3			2.1569	1.5635	NaN	1	0	Median	16011000	4018500	11993000	3197	165	3006	6633	14570;14571	14570		2	9606
TGVAVNKPAEFTVDAK	2	0	Unmodified	1645.8675	0.86753585	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1.33	0.471	2	1				16.696	16.696	2;3	0.01166	6366	DP1063-1	122.34	77.725			NaN	NaN	NaN	0	0	Median	32864000	0	32864000	3198	190	3007	6634;6635;6636	14572;14573;14574;14575	14574		4	9606
TGVELGKPTHFTVNAK	2	0	Unmodified	1697.9101	0.91006937	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					16.044	16.044	4	0.00037715	5754	DP1063-1	82.578	82.578			14.637	14.71	NaN	1	0	Median	9569300	1040100	8529200	3199	190	3008	6637	14576;14577	14577		2	9606
TGVHHYSGNNIELGTACGK	1	0	Unmodified	2013.9327	0.93267208	395	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	14.725	14.725	3	3.5425E-05	6773	DP1063-5	92.671	64.036			1.7073	1.4452	NaN	1	0	Median	11836000	4160700	7674800	3200	395	3009	6638	14578;14579;14580;14581	14579		4	9606
THEAEIVEGENHTYCIR	0	1	Unmodified	2056.9273	0.92725235	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				16.205	16.205	3	3.4938E-06	5897	DP1063-1	179.97	141.56			NaN	NaN	NaN	0	0	Median	9491200	0	9491200	3201	190	3010	6639;6640	14582;14583;14584;14585	14583		4	9606
THINIVVIGHVDSGK	1	0	Unmodified	1587.8733	0.87328993	412	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4.33	0.471				2	1	16.91	16.91	2;3	0.00033234	9304	DP1063-5	110.6	110.6			2.593	1.7948	23.397	3	0	Median	117850000	35564000	82287000	3202	412	3011	6641;6642;6643	14586;14587;14588;14589;14590;14591;14592;14593;14594;14595	14595		10	9606
THIQDNHDGTYTVAYVPDVTGR	0	1	Unmodified	2458.1513	0.15131528	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					17.781	17.781	3	0.0012808	7619	DP1063-1	91.128	55.276			NaN	NaN	NaN	0	0	Median	2941400	0	2941400	3203	190	3012	6644	14596;14597;14598	14597		3	9606
THNLEPYFESFINNLR	0	1	Unmodified	1992.9694	0.96937516	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3.36	0.979		2	5	2	2	23.631	23.631	2;3	2.0943E-18	17648	DP1063-3	195.5	166.95		+	NaN	NaN	NaN	0	0	Median	286320000	286320000	0	3204	101	3013	6645;6646;6647;6648;6649;6650;6651;6652;6653;6654;6655	14599;14600;14601;14602;14603;14604;14605;14606;14607;14608;14609;14610;14611;14612;14613;14614;14615;14616	14605		18	9606
THNLEPYFESFINNLRR	0	2	Unmodified	2149.0705	0.070486187	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.67	0.471		1	2			22.149	22.149	3;4	0.00017165	16420	DP1063-3	138.05	83.548		+	NaN	NaN	NaN	0	0	Median	46317000	46317000	0	3205	101	3014	6656;6657;6658	14617;14618;14619;14620;14621	14618		5	9606
THSDQFLVAFK	1	0	Unmodified	1291.6561	0.65608651	258	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				2		18.611	18.611	2;3	2.3792E-05	11342	DP1063-4	130.98	85.615			1.4879	1.0299	2.3964	2	0	Median	26178000	10675000	15503000	3206	258	3015	6659;6660	14622;14623;14624	14622		3	9606
TIAECLADELINAAK	1	0	Unmodified	1630.8236	0.82362212	292	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					2	24.221	24.221	2;3	3.8930000000000004E-29	18326	DP1063-5	232.56	196.13			1.6349	1.3839	1.2196	2	0	Median	27334000	10356000	16978000	3207	292	3016	6661;6662	14625;14626;14627;14628;14629	14628		5	9606
TIAIIAEGIPEALTR	0	1	Unmodified	1566.8981	0.8981077	330	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	2	0		2				22.478	22.478	2;3	0.0026841	15304	DP1063-2	134.56	134.56			2.422	1.761	NaN	1	0	Median	25771000	7064200	18707000	3208	330	3017	6663;6664	14630;14631;14632;14633	14630		4	9606
TIAMDGTEGLVR	0	1	Oxidation (M)	1277.6286	0.62855113	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3	0			1			16.843	16.843	2	0.004614	9304	DP1063-3	104.22	56.619			NaN	NaN	NaN	0	0	Median	15062000	0	15062000	3209	121	3018	6665	14634;14635	14635	110	2	9606
TIAPALVSK	1	0	Unmodified	898.54877	0.54876789	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3.5	0.5			1	1		16.406	16.406	2	0.014799	8715	DP1063-3	86.136	44.908			2.4549	1.8302	20.445	2	0	Median	78162000	23586000	54576000	3210	123	3019	6666;6667	14636;14637;14638	14637		3	9606
TIAQDYGVLK	1	0	Unmodified	1106.5972	0.59717465	446	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	18.023	18.023	2	2.5988E-06	10797	DP1063-5	147.19	124.4			2.9375	2.4866	NaN	1	0	Median	58815000	14529000	44286000	3211	446	3020	6668	14639;14640;14641	14640		3	9606
TIAQGNLSNTDVQAAK	1	0	Unmodified	1629.8322	0.83221298	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		16.008	16.008	2	8.2253E-09	7932	DP1063-4	182.1	157.4			2.0571	1.4238	NaN	1	0	Median	17254000	5006200	12248000	3212	198	3021	6669	14642;14643	14643		2	9606
TICSHVQNMIK	1	0	Oxidation (M)	1345.6482	0.64824072	242	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	1	0	5	0					1	14.418	14.418	3	0.014455	6393	DP1063-5	50.452	26.1			2.2756	1.9263	NaN	1	0	Median	15241000	4349500	10891000	3213	242	3022	6670	14644;14645	14645	282	2	9606
TIEYLQPNPASR	0	1	Unmodified	1387.7096	0.70957864	604	Q99962;Q99961	SH3GL2;SH3GL1	Endophilin-A1;Endophilin-A2	yes	no	0	0	0	4	0				1		17.61	17.61	2	0.0022695	9921	DP1063-4	114.97	79.457			NaN	NaN	NaN	0	0	Median	3103600	0	3103600	3214	604	3023	6671	14646;14647;14648;14649	14648		4	9606
TIGGGDDSFNTFFSETGAGK	1	0	Unmodified	2006.8858	0.88576469	413;605	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3.06	0.242			15	1		27.401	27.401	2	4.4362E-58	15966	DP1063-3	263.72	263.72			1.9753	1.4726	19.108	2	0	Median	408510000	134030000	274480000	3215	413;605	3024	6672;6673;6674;6675;6676;6677;6678;6679;6680;6681;6682;6683;6684;6685;6686;6687	14650;14651;14652;14653;14654;14655;14656;14657;14658;14659;14660;14661;14662;14663;14664;14665;14666;14667;14668;14669;14670;14671	14651		22	9606
TIGISVDPR	0	1	Unmodified	956.5291	0.52909508	214	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	4.5	0.5				1	1	17.371	17.371	2	0.020066	9913	DP1063-5	80.455	46.658			1.8239	1.2849	23.252	2	0	Median	38186000	12774000	25413000	3216	214	3025	6688;6689	14672;14673	14673		2	9606
TIGTGLVTNTLAMTEEEK	1	0	Oxidation (M)	1922.9507	0.95067313	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	1	0	4	0				1		19.99	19.99	2	0.00037738	13198	DP1063-4	169.04	110.87			NaN	NaN	NaN	0	0	Median	3384600	0	3384600	3217	306	3026	6690	14674;14675	14674	375	2	9606
TIIQNPTDQQK	1	0	Unmodified	1284.6674	0.66737948	659	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	4	0				1		15.436	15.436	2	2.2329E-06	7101	DP1063-4	158.76	158.76			2.1926	1.5177	NaN	1	0	Median	9889500	3762800	6126700	3218	659	3027	6691	14676;14677;14678	14677		3	9606
TINEVENQILTR	0	1	Unmodified	1428.7573	0.75725712	60	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	yes	no	0	0	0	2	0		1				19.136	19.136	2	0.00074965	10938	DP1063-2	134.57	94.943			2.0227	1.4771	NaN	1	0	Median	24039000	7352500	16686000	3219	60	3028	6692	14679;14680;14681;14682	14679		4	9606
TINLYPLTNYTFGTK	1	0	Unmodified	1744.9036	0.903587	61	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	5	0					1	22.427	22.427	2	0.0018923	16317	DP1063-5	113.69	74.734			NaN	NaN	NaN	0	0	Median	2201900	0	2201900	3220	61	3029	6693	14683;14684	14683		2	9606
TIQFVDWCPTGFK	1	0	Unmodified	1597.7599	0.75989966	605	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			2	2		22.302	22.302	2	1.4395E-05	16663	DP1063-3	172.56	138.6			NaN	NaN	NaN	0	0	Median	99820000	36064000	63757000	3221	605	3030	6694;6695;6696;6697	14685;14686;14687;14688;14689;14690;14691;14692	14686		8	9606
TIQVENSHLILTGAGALNK	1	0	Unmodified	1978.0847	0.084739268	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.8	1.08	6	1	2	1		19.463	19.463	2;3	3.9097E-89	12144	DP1063-3	291.06	291.06			1.3384	1.1144	12.918	5	0	Median	1050699999.9999999	439220000	611510000	3222	460	3031	6698;6699;6700;6701;6702;6703;6704;6705;6706;6707	14693;14694;14695;14696;14697;14698;14699;14700;14701;14702;14703;14704;14705;14706;14707;14708;14709;14710;14711;14712;14713;14714;14715	14706		23	9606
TITGFQTHTTPVLLAHGER	0	1	Unmodified	2078.0909	0.090887278	464	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	2	0		1				17.498	17.498	3	0.0030664	8720	DP1063-2	94.057	61.936			NaN	NaN	NaN	0	0	Median	9306300	0	9306300	3223	464	3032	6708	14716;14717	14717		2	9606
TITLEVEPSDTIENVK	1	0	Unmodified	1786.92	0.92002493	403	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	1.41	1	1	1	1	1	19.841	19.841	2	5.3554000000000005E-68	11886	DP1063-2	279.53	279.53			3.1482	2.528	44.122	5	0	Median	184750000	46771000	137980000	3224	403	3033	6709;6710;6711;6712;6713	14718;14719;14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733	14720		16	9606
TIVITSHPGQIVK	1	0	Unmodified	1391.8136	0.81364979	236	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	4	0				2		16.368	16.368	2;3	0.00051778	8386	DP1063-4	127.51	74.187			2.4312	1.6828	NaN	1	0	Median	29616000	7372200	22244000	3225	236	3034	6714;6715	14734;14735;14736;14737	14736		4	9606
TKPIWTR	1	1	Unmodified	900.51814	0.51813647	135;132;529	P08238;P07900;Q14568;Q58FG0;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AA5P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 2	no	no	0	0	1	2	0		1				15.132	15.132	2	0.040801	5494	DP1063-2	90.777	48.302			2.1216	1.9986	NaN	1	0	Median	115360000	37198000	78159000	3226	135;132;529	3035	6716	14738;14739	14738		2	9606
TKTPGPGAQSALR	1	1	Unmodified	1282.6993	0.69934831	372	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	13.576	13.576	3	0.0038825	5350	DP1063-5	88.552	88.552			1.771	1.5098	NaN	1	0	Median	12254000	4098700	8155300	3227	372	3036	6717	14740;14741;14742;14743;14744	14744		5	9606
TKYSLQYYMGLAEELVR	1	1	Oxidation (M)	2079.0347	0.034677532	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		1				22.268	22.268	3	0.0067678	15107	DP1063-2	57.171	28.625			1.3591	1.2804	NaN	1	0	Median	8394600	3848400	4546200	3228	154	3037	6718	14745;14746	14746	191	2	9606
TLAQLNPESSLFIIASK	1	0	Unmodified	1831.0091	0.0091147084	124	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	3	0			1			23.025	23.025	2	0.00081876	17702	DP1063-3	116.98	73.562			NaN	NaN	NaN	0	0	Median	7679700	0	7679700	3229	124	3038	6719	14747;14748	14748		2	9606
TLATDILMGVLK	1	0	Oxidation (M)	1289.7265	0.72647426	56	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	2	0		1				24.034	24.034	2	0.001326	17332	DP1063-2	101.66	101.66			2.902	2.4278	NaN	1	0	Median	8586100	2379500	6206600	3230	56	3039	6720	14749	14749	51	1	9606
TLEPVKPPTVPNDYMTSPAR	1	1	Oxidation (M)	2228.1147	0.11471877	551	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	1	1	3	0			1			17.565	17.565	3	0.0037649	10294	DP1063-3	93.115	58.394			NaN	NaN	NaN	0	0	Median	0	0	0	3231	551	3040	6721	14750	14750	681	1	9606
TLETVPLER	0	1	Unmodified	1056.5815	0.58152458	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.353	17.353	2	0.0039547	9571	DP1063-4	111.17	39.825			2.365	1.4674	NaN	1	0	Median	9769700	2449500	7320200	3232	197	3041	6722	14751	14751		1	9606
TLFPLIEAK	1	0	Unmodified	1030.6063	0.60628277	164	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	2	0		1				21.426	21.426	2	0.035805	13981	DP1063-2	69.598	69.598			1.1565	0.96752	NaN	1	0	Median	11182000	4312400	6869800	3233	164	3042	6723	14752;14753	14752		2	9606
TLFSNIVLSGGSTLFK	1	0	Unmodified	1682.9243	0.92432245	354	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	4	0				1		24.227	24.227	2	0.0023034	18379	DP1063-4	128.68	128.68			2.8729	1.9885	NaN	1	0	Median	6566800	1774500	4792300	3234	354	3043	6724	14754;14755	14755		2	9606
TLGVDLVALATR	0	1	Unmodified	1227.7187	0.71868677	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					22.335	22.335	2	0.00084757	13174	DP1063-1	116.23	70.237			2.3507	1.9349	NaN	1	0	Median	3521600	1187700	2333900	3235	222	3044	6725	14756	14756		1	9606
TLHPDLGTDKDKEQWK	3	0	Unmodified	1909.9534	0.95339074	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	2	4	0				1		15.211	15.211	3	0.0011013	6837	DP1063-4	76.85	76.85			2.7816	2.9093	NaN	1	0	Median	7704000	2960500	4743500	3236	91	3045	6726	14757	14757		1	9606
TLIQNCGASTIR	0	1	Unmodified	1332.682	0.68198369	304	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			16.422	16.422	2	0.0022008	8750	DP1063-3	128.91	128.91			3.3915	2.6724	NaN	1	0	Median	62283000	17004000	45279000	3237	304	3046	6727	14758;14759	14759		2	9606
TLLDIDNTR	0	1	Unmodified	1059.556	0.55603811	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0.816	1	1	1			18.5	18.5	2	0.00078932	10057	DP1063-2	137.14	57.538		+	NaN	NaN	NaN	0	0	Median	290110000	290110000	0	3238	251	3047	6728;6729;6730	14760;14761;14762;14763;14764;14765	14763		6	9606
TLLEGEESR	0	1	Unmodified	1032.5088	0.50875357	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	0			1			15.708	15.708	2	0.0054442	7788	DP1063-3	174.52	129.18		+	NaN	NaN	NaN	0	0	Median	368450000	368450000	0	3239	101	3048	6731	14766;14767	14767		2	9606
TLLENTAITIGR	0	1	Unmodified	1300.7351	0.73506511	572	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	2	0		1				19.806	19.806	2	6.0857E-06	11881	DP1063-2	148.56	85.131			NaN	NaN	NaN	0	0	Median	8877700	0	8877700	3240	572	3049	6732	14768	14768		1	9606
TLMAAMAWTVYEEMMAK	1	0	2 Oxidation (M)	2007.8814	0.88141305	578	Q96DW6	SLC25A38	Solute carrier family 25 member 38	yes	yes	0	2	0	3	0			2			30.91	30.91	2	0.041984	26360	DP1063-3	66.267	39.56			NaN	NaN	NaN	0	0	Median	0	0	0	3241	578	3050	6733;6734	14769;14770	14770	695;696	2	9606
TLMNLGGLAVAR	0	1	Unmodified	1214.6805	0.68052712	261	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					2	20.666	20.666	2	0.001015	14216	DP1063-5	120.12	65.511			NaN	NaN	NaN	0	0	Median	0	0	0	3242	261	3051	6735;6736	14771;14772	14772		2	9606
TLNDELEIIEGMKFDR	1	1	Oxidation (M)	1937.9404	0.9404428	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	1	3	0			1			21.101	21.101	3	0.017159	15202	DP1063-3	76.82	54.606			NaN	NaN	NaN	0	0	Median	10516000	0	10516000	3243	151	3052	6737	14773	14773	164	1	9606
TLNDMRQEYEQLIAK	1	1	Oxidation (M)	1866.9146	0.9145624	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2.67	1.25	1		1	1		18.37	18.37	2;3	0.011708	8351	DP1063-1	90.731	64.072		+	NaN	NaN	NaN	0	0	Median	99033000	99033000	0	3244	251	3053	6738;6739;6740	14774;14775;14776	14774	293	3	9606
TLNDMRQEYEQLIAK	1	1	Unmodified	1850.9196	0.91964777	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			20.556	20.556	3	0.024228	14459	DP1063-3	76.156	46.467		+	NaN	NaN	NaN	0	0	Median	15804000	15804000	0	3245	251	3053	6741	14777;14778	14778		2	9606
TLQAGLSSNHVSHGEVLR	0	1	Unmodified	1903.9864	0.98642221	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				15.56	15.56	3	0.0015558	6097	DP1063-2	104.44	76.858			NaN	NaN	NaN	0	0	Median	16849000	0	16849000	3246	82	3054	6742	14779;14780	14780		2	9606
TLRDPSLPLLELQDIMTSVSGR	0	2	Oxidation (M)	2456.2945	0.29447405	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	2	2				22.788	22.788	2;3	1.5881E-15	13626	DP1063-1	186.06	186.06			1.0478	1.0069	2.3237	3	0	Plateau	71590000	32578000	39012000	3247	460	3055	6743;6744;6745;6746	14781;14782;14783;14784;14785;14786;14787;14788;14789;14790;14791;14792;14793;14794;14795	14785	563	15	9606
TLRDPSLPLLELQDIMTSVSGR	0	2	Unmodified	2440.2996	0.29955942	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					25.215	25.215	3	0.031473	16316	DP1063-1	49.515	49.515			0.40409	0.37142	NaN	1	0	Median	3643100	2245600	1397500	3248	460	3055	6747	14796	14796		1	9606
TLSDYNIQK	1	0	Unmodified	1080.5451	0.54513908	403	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3.5	1.12		1	1	1	1	16.165	16.165	2	0.0051878	6985	DP1063-2	104.75	76.573			3.0489	2.214	15.823	3	0	Median	163760000	24854000	138910000	3249	403	3056	6748;6749;6750;6751	14797;14798;14799;14800;14801;14802;14803;14804;14805	14798		9	9606
TLSGMESYCVR	0	1	Oxidation (M)	1317.5693	0.56932169	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	1	0	3	0			1			15.793	15.793	2	0.0087396	7957	DP1063-3	76.943	58.718			3.6179	2.718	NaN	1	0	Median	33526000	7814500	25712000	3250	320	3057	6752	14806;14807;14808	14808	388	3	9606
TLSGMESYCVR	0	1	Unmodified	1301.5744	0.57440707	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			17.588	17.588	2	0.0032539	10339	DP1063-3	112.75	82.178			NaN	NaN	NaN	0	0	Median	8145100	0	8145100	3251	320	3057	6753	14809	14809		1	9606
TLSSPSNRPSGETSVPPPPAVGR	0	2	Unmodified	2289.1713	0.17132244	560	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	1	2	0		1				16.145	16.145	3	0.0012372	6883	DP1063-2	92.289	64.763			NaN	NaN	NaN	0	0	Median	6981700	0	6981700	3252	560	3058	6754	14810;14811;14812;14813	14810		4	9606
TLTAVHDAILEDLVFPSEIVGK	1	0	Unmodified	2366.2733	0.2733279	364	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	23.994	23.994	3	0.0037717	18115	DP1063-5	81.89	44.654			NaN	NaN	NaN	0	0	Median	1392600	0	1392600	3253	364	3059	6755	14814;14815	14814		2	9606
TLTLVDTGIGMTK	1	0	Unmodified	1348.7272	0.72720254	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2.67	0.943		2		1		20.111	20.111	2	6.0685E-05	12087	DP1063-2	152.54	0			2.0944	1.7522	NaN	1	0	Median	40248000	8019100	32229000	3254	135	3060	6756;6757;6758	14816;14817;14818;14819	14817		4	9606
TLTQGGVTYR	0	1	Unmodified	1094.572	0.57202253	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		15.47	15.47	2	0.00011753	7190	DP1063-4	128.36	101.76			1.1444	0.8244	NaN	1	0	Median	31465000	14852000	16613000	3255	477	3061	6759	14820;14821	14820		2	9606
TLVLLDNLNVR	0	1	Unmodified	1268.7452	0.74523587	267	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	4	0				1		21.544	21.544	2	0.00043976	15177	DP1063-4	123.86	28.29			1.7664	1.1459	NaN	1	0	Median	6222900	2446100	3776900	3256	267	3062	6760	14822;14823;14824;14825	14823		4	9606
TLVSVTK	1	0	Unmodified	746.4538	0.45380487	132	P07900;Q58FG1	HSP90AA1;HSP90AA4P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A4	yes	no	0	0	0	2	0		1				14.914	14.914	1	0.01506	5230	DP1063-2	127.84	35.938			NaN	NaN	NaN	0	0	Median	6143100	0	6143100	3257	132	3063	6761	14826	14826		1	9606
TMLITHMQDLQEVTQDLHYENFR	0	1	2 Oxidation (M)	2893.3375	0.33747785	498	Q15019	SEPT2	Septin-2	yes	yes	0	2	0	4	0				2		19.836	19.836	3;4	0.00023751	13018	DP1063-4	100.76	76.56			NaN	NaN	NaN	0	0	Median	13728000	0	13728000	3258	498	3064	6762;6763	14827;14828;14829;14830	14828	634;635	4	9606
TMMACGGSIQTSVNALSADVLGR	0	1	2 Oxidation (M)	2370.0978	0.097764849	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	2	0	3	0			1			21.953	21.953	2	1.4649999999999998E-21	16252	DP1063-3	216.99	165.63			NaN	NaN	NaN	0	0	Median	8408400	0	8408400	3259	601	3065	6764	14831;14832	14831	733;734	2	9606
TNAENEFVTIK	1	0	Unmodified	1264.6299	0.62993134	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0.816	1	1	1			17.841	17.841	2	0.0034602	7689	DP1063-1	110.39	74.846		+	NaN	NaN	NaN	0	0	Median	142850000	142850000	0	3260	101	3066	6765;6766;6767	14833;14834;14835;14836;14837	14834		5	9606
TNAENEFVTIKK	2	0	Unmodified	1392.7249	0.72489436	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.88	1.36	2	1	2	2	1	15.982	15.982	2;3	1.5891E-08	8098	DP1063-3	205.52	166.72		+	NaN	NaN	NaN	0	0	Median	353010000	353010000	0	3261	101	3067	6768;6769;6770;6771;6772;6773;6774;6775	14838;14839;14840;14841;14842;14843;14844;14845;14846;14847;14848;14849;14850;14851	14846		14	9606
TNEKVELQELNDR	1	1	Unmodified	1586.79	0.79001381	136	P08670;P17661	VIM;DES	Vimentin;Desmin	yes	no	0	0	1	3	0			1			16.195	16.195	2	0.0122	8464	DP1063-3	124.39	56.316			NaN	NaN	NaN	0	0	Median	6530200	0	6530200	3262	136	3068	6776	14852	14852		1	9606
TNHIGHTGYLNTVTVSPDGSLCASGGK	1	0	Unmodified	2742.3031	0.30314125	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				2		17.43	17.43	3;4	0.00047219	9794	DP1063-4	62.404	62.404			2.5119	1.7387	NaN	1	0	Median	13132000	2026500	11105000	3263	408	3069	6777;6778	14853;14854;14855;14856;14857	14854		5	9606
TNMLVQFLMEMYKMKK	3	0	3 Oxidation (M)	2082.0022	0.0021968909	55	O15480	MAGEB3	Melanoma-associated antigen B3	yes	yes	0	3	2	3.67	0.471			1	2		21.307	21.307	2	0.038245	14816	DP1063-4	56.087	23.609			NaN	NaN	NaN	0	0	Median	413610000	413610000	0	3264	55	3070	6779;6780;6781	14858;14859;14860	14859	48;49;50	3	9606
TNNVSEHEDTDKYR	1	1	Unmodified	1706.7496	0.74960556	331	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	2	0		1				12.91	12.91	3	0.0014665	2797	DP1063-2	105	78.273			NaN	NaN	NaN	0	0	Median	2833000	0	2833000	3265	331	3071	6782	14861;14862	14861		2	9606
TNTPVKEDWNVR	1	1	Unmodified	1457.7263	0.72629134	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		2				15.977	15.977	2;3	0.00020606	6689	DP1063-2	133.42	133.42			0.81277	0.76566	4.5452	2	0	Median	44064000	23268000	20796000	3266	418	3072	6783;6784	14863;14864;14865;14866;14867;14868;14869;14870;14871	14864		9	9606
TPAAIPATPVAVSQPIR	0	1	Unmodified	1687.9621	0.96210494	338	P55196	MLLT4	Afadin	yes	yes	0	0	0	1	0	1					18.746	18.746	2	0.0052677	8808	DP1063-1	102.62	59.077			NaN	NaN	NaN	0	0	Median	0	0	0	3267	338	3073	6785	14872	14872		1	9606
TPALVFEHVNNTDFK	1	0	Unmodified	1730.8628	0.86278482	415	Q8NEV1;P68400	CSNK2A3;CSNK2A1	Casein kinase II subunit alpha 3;Casein kinase II subunit alpha	yes	no	0	0	0	4	0				2		18.841	18.841	2;3	3.2644E-10	11655	DP1063-4	171.62	130.22			NaN	NaN	NaN	0	0	Median	6022200	0	6022200	3268	415	3074	6786;6787	14873;14874;14875	14875		3	9606
TPAQFDADELR	0	1	Unmodified	1261.5939	0.59388018	99	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	4	0				1		17.837	17.837	2	0.013441	10272	DP1063-4	85.355	47.051			NaN	NaN	NaN	0	0	Median	2028800	0	2028800	3269	99	3075	6788	14876	14876		1	9606
TPAQYDASELK	1	0	Unmodified	1221.5877	0.58773217	128	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	4	0				1		15.965	15.965	2	3.2433E-06	7876	DP1063-4	159.09	78.921			NaN	NaN	NaN	0	0	Median	6632500	0	6632500	3270	128	3076	6789	14877;14878	14877		2	9606
TPCEEILVK	1	0	Unmodified	1087.5583	0.5583463	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					17.116	17.116	2	0.032454	6821	DP1063-1	84.615	48.058			NaN	NaN	NaN	0	0	Median	12696000	0	12696000	3271	190	3077	6790	14879	14879		1	9606
TPDTSTYCYETAEK	1	0	Unmodified	1664.6876	0.68758215	294	P46821	MAP1B	Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1	yes	yes	0	0	0	1	0	1					16.149	16.149	2	0.0011275	5851	DP1063-1	114.86	96.528			NaN	NaN	NaN	0	0	Median	0	0	0	3272	294	3078	6791	14880	14880		1	9606
TPGAATASASGAAEDGACGCLPNPGTFEECHR	0	1	Unmodified	3218.3452	0.34515878	90	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	4	0				1		18.391	18.391	3	3.5767E-07	11044	DP1063-4	98.839	86.346			NaN	NaN	NaN	0	0	Median	3487100	3487100	0	3273	90	3079	6792	14881	14881		1	9606
TPGPGAQSALR	0	1	Unmodified	1053.5567	0.55670682	372	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	14.548	14.548	2	0.0028	6515	DP1063-5	101.65	71.571			1.8074	1.3498	NaN	1	0	Median	72115000	25965000	46151000	3274	372	3080	6793	14882;14883;14884;14885	14885		4	9606
TPHVLVLGSGVYR	0	1	Unmodified	1396.7827	0.78268401	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					18.181	18.181	3	0.00082796	8114	DP1063-1	94.402	80.393			2.0701	1.6116	NaN	1	0	Median	9286200	2861700	6424500	3275	222	3081	6794	14886;14887	14887		2	9606
TPIGSFLGSLSLLPATK	1	0	Unmodified	1700.9713	0.97127264	205	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	4	0				1		24.882	24.882	2	8.6086E-07	19059	DP1063-4	181.67	138.86			NaN	NaN	NaN	0	0	Median	2272700	0	2272700	3276	205	3082	6795	14888;14889	14888		2	9606
TPIVGQPSIPGGPVR	0	1	Unmodified	1473.8304	0.83036248	18	CON__P12763			yes	yes	0	0	0	4	1			1		1	18.288	18.288	2	6.5665E-17	11271	DP1063-3	218.75	160.32		+	NaN	NaN	NaN	0	0	Median	216520000	216520000	0	3277	18	3083	6796;6797	14890;14891;14892;14893	14891		4	9606
TPLHEIALSIK	1	0	Unmodified	1220.7129	0.71287311	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				18.272	18.272	2	0.0035234	9791	DP1063-2	109.66	47.985			NaN	NaN	NaN	0	0	Median	5168700	0	5168700	3278	452	3084	6798	14894	14894		1	9606
TPMCAHCNQVIR	0	1	Oxidation (M)	1501.6588	0.65882218	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	1	0	3	0			1			13.325	13.325	3	0.0033194	4689	DP1063-3	88.596	54.21			NaN	NaN	NaN	0	0	Median	6207800	0	6207800	3279	582	3085	6799	14895;14896	14895	701	2	9606
TPTQTNGSNVPFKPR	1	1	Unmodified	1642.8427	0.84271808	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		1				15.07	15.07	3	0.0013034	5522	DP1063-2	93.228	75.362			0.56294	0.53031	NaN	1	0	Median	15439000	8768000	6671100	3280	418	3086	6800	14897;14898	14897		2	9606
TPTSSPASSPLVAK	1	0	Unmodified	1341.714	0.71399532	490	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				15.724	15.724	2	0.00050034	6322	DP1063-2	150.09	108.65			NaN	NaN	NaN	0	0	Median	6475000	0	6475000	3281	490	3087	6801	14899	14899		1	9606
TPVPSDIDISR	0	1	Unmodified	1198.6194	0.61936665	155	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	4	0				1		17.455	17.455	2	0.058294	9597	DP1063-4	60.019	27.699			1.2485	0.90095	NaN	1	0	Median	31887000	12842000	19045000	3282	155	3088	6802	14900	14900		1	9606
TPVQYSQQQNSPQK	1	0	Unmodified	1631.7903	0.79034816	284	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.67	0.471	1	2				14.035	14.035	2	4.5752E-24	4156	DP1063-2	205.07	130.54			NaN	NaN	NaN	0	0	Median	580700	0	580700	3283	284	3089	6803;6804;6805	14901;14902;14903;14904	14904		4	9606
TQDQISNIK	1	0	Unmodified	1045.5404	0.54038805	494	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	4	0				1		14.551	14.551	2	0.049347	5996	DP1063-4	80.165	44.81			NaN	NaN	NaN	0	0	Median	3653600	0	3653600	3284	494	3090	6806	14905	14905		1	9606
TQGFLALFSGDTGEIK	1	0	Unmodified	1682.8516	0.85155143	660	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	3	0			1			23.527	23.527	2	0.0024359	18273	DP1063-3	97.273	59.035			3.1935	2.5644	NaN	1	0	Median	11116000	2763000	8352700	3285	660	3091	6807	14906	14906		1	9606
TQINSQLRPMMSELEER	0	2	Oxidation (M)	2076.9932	0.99322342	478	Q13753	LAMC2	Laminin subunit gamma-2	yes	yes	0	1	1	5	0					1	19.976	19.976	2	0.044123	13327	DP1063-5	80.245	25.985			NaN	NaN	NaN	0	0	Median	6641500	0	6641500	3286	478	3092	6808	14907	14907	618	1	9606
TQLNLLLDK	1	0	Unmodified	1056.6179	0.61791009	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				19.677	19.677	2	0.0035656	11670	DP1063-2	111.06	25.9			NaN	NaN	NaN	0	0	Median	20984000	0	20984000	3287	654	3093	6809	14908;14909	14908		2	9606
TQLNLLLDKLR	1	1	Unmodified	1325.8031	0.8030851	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		1				20.54	20.54	3	0.01397	12869	DP1063-2	80.245	33.449			NaN	NaN	NaN	0	0	Median	8452000	0	8452000	3288	654	3094	6810	14910;14911	14910		2	9606
TQLQLDER	0	1	Unmodified	1001.5142	0.5141733	329	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		15.8	15.8	2	0.00016131	7639	DP1063-4	141.52	66.329			1.7375	1.1865	NaN	1	0	Median	20693000	8100800	12592000	3289	329	3095	6811	14912;14913;14914	14913		3	9606
TQPMTAQAASYR	0	1	Oxidation (M)	1339.619	0.61904908	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	1	0	3	0			1			14.041	14.041	2	0.0013781	5532	DP1063-3	100.88	80.888			1.5465	1.1261	NaN	1	0	Median	13226000	5162100	8064000	3290	591	3096	6812	14915;14916;14917	14915	707	3	9606
TQPMTAQAASYR	0	1	Unmodified	1323.6241	0.62413446	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	0			1			15.459	15.459	2	0.023225	7460	DP1063-3	69.672	35.466			2.2283	1.687	NaN	1	0	Median	8500700	2121200	6379500	3291	591	3096	6813	14918;14919	14918		2	9606
TQQAAQANITLQEQIEAIHK	1	0	Unmodified	2234.1655	0.16550878	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				18.84	18.84	3	2.9297E-25	10521	DP1063-2	214.94	214.94			1.3233	1.1071	NaN	1	0	Median	76455000	33427000	43028000	3292	513	3097	6814	14920;14921;14922;14923;14924	14922		5	9606
TQSSASLAASYAAQQHPQAAASYR	0	1	Unmodified	2464.1731	0.17311336	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	4	0.816			1	1	1	16.966	16.966	3	9.962E-13	9464	DP1063-3	176.61	176.61			1.1648	0.82434	11.49	2	0	Median	58428000	25995000	32433000	3293	591	3098	6815;6816;6817	14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937	14928		13	9606
TQTPPVSPAPQPTEER	0	1	Unmodified	1733.8584	0.85842773	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	3	0			1			15.441	15.441	2	0.0014778	7432	DP1063-3	115.34	69.427			NaN	NaN	NaN	0	0	Median	5476400	0	5476400	3294	488	3099	6818	14938;14939;14940	14939		3	9606
TREEECHFYAGGQVYPGEASR	0	2	Unmodified	2442.0659	0.065871094	462	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	1	5	0					1	16.4	16.4	3	3.311E-05	8767	DP1063-5	145.73	126.85			NaN	NaN	NaN	0	0	Median	16756000	0	16756000	3295	462	3100	6819	14941;14942;14943	14942		3	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Oxidation (M)	2783.2353	0.23532096	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.8	0.748		2	2	1		20.262	20.262	2;3	7.0501E-20	12508	DP1063-2	178	168.39			1.2352	0.92085	17.153	4	0	Median	181630000	84632000	97001000	3296	595	3101	6820;6821;6822;6823;6824	14944;14945;14946;14947;14948;14949;14950;14951;14952	14946	724	9	9606
TSAAQAIHPGCGFLSENMEFAELCK	1	0	Unmodified	2767.2404	0.24040634	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			21.091	21.091	3	4.9448E-18	13618	DP1063-2	183.99	156.79			1.6443	1.3203	NaN	1	0	Median	19491000	9812900	9678100	3297	595	3101	6825;6826	14953;14954	14953		2	9606
TSAAQAIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIR	1	1	Oxidation (M)	4359.1126	0.11263364	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	0		1				22.667	22.667	4	3.5123E-22	15621	DP1063-2	104.88	96.339			0.73637	0.69369	NaN	1	0	Median	16634000	8060600	8573500	3298	595	3102	6827	14955	14955	724	1	9606
TSATWLALSR	0	1	Unmodified	1104.5928	0.59275797	107	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				19.706	19.706	2	0.00038033	11752	DP1063-2	123.35	89.102			1.6576	1.1998	NaN	1	0	Median	17411000	6281900	11129000	3299	107	3103	6828	14956;14957	14956		2	9606
TSFFQALGITTK	1	0	Unmodified	1312.7027	0.70270235	115	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		22.718	22.718	2	0.0006088	16581	DP1063-4	126.71	103.56			1.2805	0.88632	NaN	1	0	Median	14432000	5798200	8633600	3300	115	3104	6829	14958;14959;14960	14959		3	9606
TSIAIDTIINQK	1	0	Unmodified	1315.7347	0.73473076	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			19.732	19.732	2	9.2885E-06	13291	DP1063-3	170.5	170.5			2.0755	1.6666	NaN	1	0	Median	39589000	12555000	27034000	3301	207	3105	6830	14961;14962;14963;14964	14963		4	9606
TSLYSEDDCK	1	0	Unmodified	1216.4918	0.49178288	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.121	15.121	2	2.4097E-05	4694	DP1063-1	131.44	119.59			1.2605	0.9735	NaN	1	0	Median	6124500	2815100	3309400	3302	43	3106	6831	14965;14966;14967;14968	14965		4	9606
TSPADHGGSVGSESGGSAVDSVAGEHSVSGR	0	1	Unmodified	2839.2605	0.26048439	531	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	0	1					15.438	15.438	4	0.0041688	5064	DP1063-1	60.829	29.947			NaN	NaN	NaN	0	0	Median	1329000	0	1329000	3303	531	3107	6832	14969	14969		1	9606
TSQNSELNNMQDLVEDYKK	2	0	Oxidation (M)	2271.0325	0.03250528	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	2.33	0.943	1		2			16.784	16.784	2;3	0.00046117	9121	DP1063-3	112.91	98.07		+	NaN	NaN	NaN	0	0	Median	41254000	41254000	0	3304	22	3108	6833;6834;6835	14970;14971;14972;14973;14974	14973	24	5	9606
TSSAQVEGGVHSLHSYEK	1	0	Unmodified	1914.9072	0.90716883	160	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	3	0			1			15.104	15.104	3	0.00026515	6938	DP1063-3	135.47	113.65			NaN	NaN	NaN	0	0	Median	4872300	0	4872300	3305	160	3109	6836	14975;14976	14976		2	9606
TSSSFAAAMAR	0	1	Oxidation (M)	1114.5077	0.50770771	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	1	0	1					14.602	14.602	2	0.0087914	4077	DP1063-1	76.827	66.84			1.8129	1.4905	NaN	1	0	Median	3572300	1402000	2170400	3306	222	3110	6837	14977	14977	275	1	9606
TSTAPAASPNVR	0	1	Unmodified	1170.5993	0.59929991	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	13.672	13.672	2	0.00020833	3103	DP1063-1	154.01	117.63			1.1268	0.83233	14.198	5	0	Median	676680000	312220000	364460000	3307	154	3111	6838;6839;6840;6841;6842	14978;14979;14980;14981;14982;14983;14984;14985;14986;14987;14988;14989;14990;14991;14992;14993;14994;14995	14981		18	9606
TSTTSSMVASAEQPR	0	1	Oxidation (M)	1567.7148	0.71479996	273	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	1	0	4	0				1		14.034	14.034	2	0.0043001	5290	DP1063-4	107.18	84.534			NaN	NaN	NaN	0	0	Median	11034000	0	11034000	3308	273	3112	6843	14996;14997	14997	327	2	9606
TSTTSSMVASAEQPR	0	1	Unmodified	1551.7199	0.71988533	273	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	0	4	0				1		15.903	15.903	2	0.0036484	7803	DP1063-4	100.55	25.711			NaN	NaN	NaN	0	0	Median	0	0	0	3309	273	3112	6844	14998	14998		1	9606
TTANAIYCPPK	1	0	Unmodified	1234.6016	0.6016081	36	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	4	0				1		15.915	15.915	2	0.034086	7849	DP1063-4	78.264	47.44			NaN	NaN	NaN	0	0	Median	1686100	0	1686100	3310	36	3113	6845	14999	14999		1	9606
TTDGYLLR	0	1	Unmodified	937.4869	0.48689592	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.199	17.199	2	0.032888	9417	DP1063-4	82.305	60.174			2.1998	1.5328	NaN	1	0	Median	24244000	7807300	16437000	3311	355	3114	6846	15000;15001	15001		2	9606
TTEMETIYDLGTK	1	0	Oxidation (M)	1516.6967	0.69669028	660	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	1	0	3	0			1			18.464	18.464	2	0.00042711	11530	DP1063-3	130.01	83.187			NaN	NaN	NaN	0	0	Median	6726900	0	6726900	3312	660	3115	6847	15002	15002	770	1	9606
TTGFGMIYDSLDYAK	1	0	Oxidation (M)	1696.7654	0.76543854	390	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	5	0					1	21.243	21.243	2	0.0017898	14913	DP1063-5	87.641	87.641			1.8986	1.6071	NaN	1	0	Median	23169000	7509800	15659000	3313	390	3116	6848	15003;15004	15003	484	2	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	1	Oxidation (M)	3198.6019	0.60194904	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				2		20.632	20.632	3;4	3.3369E-45	14058	DP1063-4	224.83	181.15			2.1876	1.7791	NaN	1	0	Median	226120000	25215000	200900000	3314	349;409	3117	6849;6850	15005;15006;15007;15008;15009;15010;15011;15012;15013	15007	442	9	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	1	Unmodified	3182.607	0.60703441	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				2		21.14	21.14	3;4	4.9755E-17	14656	DP1063-4	114.91	114.91			2.4489	1.8112	3.3356	2	0	Median	83225000	23114000	60110000	3315	349;409	3117	6851;6852	15014;15015;15016;15017;15018	15017		5	9606
TTHFVEGGDAGNR	0	1	Unmodified	1359.6167	0.61674089	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		13.584	13.584	3	0.0064099	4807	DP1063-4	63.76	43.553			1.7204	1.2837	NaN	1	0	Median	2983200	1238400	1744700	3316	182	3118	6853	15019;15020	15020		2	9606
TTHFVEGGDAGNREDQINR	0	2	Unmodified	2114.973	0.97295699	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				2		14.567	14.567	3;4	6.3486E-05	5981	DP1063-4	116	105.53			1.6955	1.5203	0.48318	2	0	Median	59561000	22475000	37085000	3317	182	3119	6854;6855	15021;15022;15023;15024;15025;15026;15027	15021		7	9606
TTIFSPEGR	0	1	Unmodified	1006.5084	0.50835964	211	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	4	0				1		17.256	17.256	2	0.020861	9484	DP1063-4	79.906	45.099			1.4851	0.92451	NaN	1	0	Median	10026000	4384000	5641500	3318	211	3120	6856	15028	15028		1	9606
TTLPERPLTEVK	1	1	Unmodified	1382.7769	0.77692993	593	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				16.188	16.188	3	0.010348	6950	DP1063-2	82.85	54.467			NaN	NaN	NaN	0	0	Median	13568000	0	13568000	3319	593	3121	6857	15029;15030	15030		2	9606
TTLVIMER	0	1	Oxidation (M)	977.52157	0.52156686	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	2	0		1				16.27	16.27	2	0.013984	7116	DP1063-2	89.55	89.55			3.1277	2.2697	NaN	1	0	Median	15083000	3435900	11647000	3320	495	3122	6858	15031;15032	15031	628	2	9606
TTNFAGILSQGLR	0	1	Unmodified	1376.7412	0.74121312	142	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				21.525	21.525	2	0.0010204	14140	DP1063-2	110.93	87.409			2.977	2.1546	NaN	1	0	Median	21484000	6957600	14526000	3321	142	3123	6859	15033;15034	15033		2	9606
TTPSVVAFTADGER	0	1	Unmodified	1449.71	0.70997257	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			18.507	18.507	2	0.00084196	11589	DP1063-3	152.69	133.09			1.411	1.0757	19.427	2	0	Median	99720000	38704000	61016000	3322	263	3124	6860;6861	15035;15036;15037;15038;15039;15040;15041	15041		7	9606
TTPSYVAFTDTER	0	1	Unmodified	1486.694	0.69398816	149;153;176	P11142;P54652;P17066;P48741;P0DMV9;P0DMV8	HSPA8;HSPA2;HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	4	0.816			1	1	1	18.472	18.472	2	0.00062271	11537	DP1063-3	150.15	135.46			2.6504	1.8923	24.001	3	0	Median	827240000	208890000	618360000	3323	153;176;149	3125	6862;6863;6864	15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052	15044		11	9606
TTQVPQFILDDFIQNDR	0	1	Unmodified	2049.0167	0.016719282	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				23.95	23.95	2	0.0011307	17166	DP1063-2	129.77	109.39			1.9283	1.4065	NaN	1	0	Median	11373000	4413200	6959500	3324	452	3126	6865	15053;15054;15055;15056	15054		4	9606
TTSGALFPSLVPGSR	0	1	Acetyl (Protein N-term)	1530.8042	0.80420731	516	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	1	0	0	4	0				2		23.794	23.794	2	0.0017344	17889	DP1063-4	103.88	55.241			NaN	NaN	NaN	0	0	Median	0	0	0	3325	516	3127	6866;6867	15057;15058	15058		2	9606
TTTGSYIANR	0	1	Unmodified	1082.5356	0.53563702	224	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	5	0					1	14.504	14.504	2	0.0024201	6528	DP1063-5	104.2	77.067			1.8667	1.3941	NaN	1	0	Median	13486000	4787400	8698400	3326	224	3128	6868	15059;15060;15061;15062	15062		4	9606
TTVEYLIK	1	0	Unmodified	965.54335	0.54334816	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.136	18.136	1;2	0.00050582	7980	DP1063-1	132.09	76.653			1.3743	1.232	9.1943	3	0	Median	863670000	364640000	499030000	3327	460	3129	6869;6870;6871	15063;15064;15065;15066;15067;15068	15064		5	9606
TTVQQEPLESGAK	1	0	Unmodified	1386.6991	0.69907354	313	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1	0	1					14.95	14.95	2	0.0012256	4503	DP1063-1	106.29	65.567			NaN	NaN	NaN	0	0	Median	0	0	0	3328	313	3130	6872	15069	15069		1	9606
TVAGGAWTYNTTSAVTVK	1	0	Unmodified	1825.921	0.92102798	359	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	5	0					1	18.803	18.803	2	8.5578E-05	11861	DP1063-5	152.88	152.88			1.1555	0.97815	NaN	1	0	Median	13974000	7156600	6817500	3329	359	3131	6873	15070;15071	15071		2	9606
TVAIHSDVDASSVHVK	1	0	Unmodified	1663.8529	0.85294842	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	1.07		3	2	1	1	15.231	15.231	2;3;4	2.2033E-30	7131	DP1063-3	234.49	234.49			1.4831	1.2144	21.183	6	0	Median	728720000	266150000	462580000	3330	110	3132	6874;6875;6876;6877;6878;6879;6880	15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084;15085;15086;15087;15088;15089;15090;15091;15092;15093;15094	15089		23	9606
TVAIYSEQDTGQMHR	0	1	Oxidation (M)	1750.7944	0.79444726	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	1.41	2	2	2	2	2	15.063	15.063	2;3	1.8116E-05	5447	DP1063-2	166.11	166.11			1.4581	1.1054	17.6	10	0	Median	1421600000	568870000	852730000	3331	154	3133	6881;6882;6883;6884;6885;6886;6887;6888;6889;6890	15095;15096;15097;15098;15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116;15117;15118;15119;15120;15121;15122;15123;15124;15125;15126;15127;15128;15129;15130;15131;15132;15133;15134;15135;15136;15137;15138	15112	192	44	9606
TVAIYSEQDTGQMHR	0	1	Unmodified	1734.7995	0.79953264	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.44	0.956		2	2	4	1	15.949	15.949	2;3	1.1604E-39	6626	DP1063-2	231.17	231.17			1.5055	1.3844	13.129	5	0	Linear	568450000	217970000	350490000	3332	154	3133	6891;6892;6893;6894;6895;6896;6897;6898;6899	15139;15140;15141;15142;15143;15144;15145;15146;15147;15148;15149;15150;15151;15152;15153;15154;15155;15156;15157;15158;15159;15160;15161;15162;15163;15164;15165	15141		27	9606
TVAQSQQLETNSQR	0	1	Unmodified	1588.7805	0.78051176	271	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		14.158	14.158	2	0.00014859	5509	DP1063-4	136.27	68.143			NaN	NaN	NaN	0	0	Median	1748900	0	1748900	3333	271	3134	6900	15166;15167	15166		2	9606
TVATPLNQVANPNSAIFGGARPR	0	2	Unmodified	2350.2506	0.25057582	500	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	1	5	0					1	19.391	19.391	3	0.00029521	12572	DP1063-5	109.72	49.099			NaN	NaN	NaN	0	0	Median	5645500	0	5645500	3334	500	3135	6901	15168;15169	15168		2	9606
TVEEVTVER	0	1	Unmodified	1060.5401	0.5400537	450	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	2	0		1				15.25	15.25	2	0.051925	5728	DP1063-2	84.743	7.0024			NaN	NaN	NaN	0	0	Median	0	0	0	3335	450	3136	6902	15170	15170		1	9606
TVEGVLIVHEHR	0	1	Unmodified	1387.7572	0.75719754	61	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	5	0					1	15.654	15.654	3	0.0012076	7892	DP1063-5	90.434	90.434			2.6344	1.9675	NaN	1	0	Median	14182000	4122700	10059000	3336	61	3137	6903	15171;15172	15171		2	9606
TVELSIPADPANLDSEAK	1	0	Unmodified	1868.9367	0.93673763	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.21	0.674	25	1	1	1		25.687	25.687	2;3	2.7339E-16	12617	DP1063-2	195.71	158.38			1.0665	0.89956	13.016	13	0	Median	797100000	377770000	419340000	3337	460	3138	6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915;6916;6917;6918;6919;6920;6921;6922;6923;6924;6925;6926;6927;6928;6929;6930;6931	15173;15174;15175;15176;15177;15178;15179;15180;15181;15182;15183;15184;15185;15186;15187;15188;15189;15190;15191;15192;15193;15194;15195;15196;15197;15198;15199;15200;15201;15202;15203;15204;15205;15206;15207;15208;15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220;15221;15222;15223;15224;15225;15226;15227;15228;15229;15230	15221		58	9606
TVEVLEPEVTK	1	0	Unmodified	1242.6707	0.67073352	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				17.697	17.697	2	0.0037839	8934	DP1063-2	106.68	54.428			NaN	NaN	NaN	0	0	Median	7356300	0	7356300	3338	543;581	3139	6932	15231;15232	15232		2	9606
TVFAEHISDECK	1	0	Unmodified	1434.6449	0.64492948	266	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				2		15.936	15.936	2;3	8.4869E-09	7843	DP1063-4	186.87	135.6			1.7511	1.2121	22.634	2	0	Median	18502000	7253800	11248000	3339	266	3140	6933;6934	15233;15234;15235;15236;15237;15238;15239	15234		7	9606
TVFAEHISDECKR	1	1	Unmodified	1590.746	0.7460405	266	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	4	0				1		15.06	15.06	3	0.00014984	6654	DP1063-4	131.17	89.931			2.3503	2.2851	NaN	1	0	Median	10562000	4452100	6109700	3340	266	3141	6935	15240;15241;15242	15241		3	9606
TVGALQVLGTEAQSSLLK	1	0	Unmodified	1814.0149	0.014928368	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.278	22.278	2	4.3125999999999996E-88	13083	DP1063-1	301.38	301.38			2.6383	2.1117	NaN	1	0	Median	11068000	3220700	7847400	3341	420	3142	6936	15243;15244;15245;15246	15243		4	9606
TVGGKEDVIWELLNHAQEHFGK	2	0	Unmodified	2506.2605	0.2604718	23	CON__Q0IIK2;CON__Q29443			yes	no	0	0	1	2	0		1				21.771	21.771	4	0.0025352	14498	DP1063-2	81.226	44.955		+	NaN	NaN	NaN	0	0	Median	6653300	6653300	0	3342	23	3143	6937	15247	15247		1	
TVGIVGNQPK	1	0	Unmodified	1011.5713	0.57129425	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	0.829			2	1	1	14.855	14.855	1;2	5.1859E-05	6958	DP1063-3	131.06	92.1			1.2772	1.1265	12.029	4	0	Linear	365720000	152880000	212840000	3343	111	3144	6938;6939;6940;6941	15248;15249;15250;15251;15252;15253;15254;15255;15256;15257;15258;15259;15260;15261	15254		14	9606
TVIIEQSWGSPK	1	0	Unmodified	1343.7085	0.70851601	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			18.635	18.635	2	6.1285E-06	11727	DP1063-3	172.88	127.9			1.8304	1.4698	NaN	1	0	Median	50603000	17109000	33494000	3344	151	3145	6942	15262;15263	15262		2	9606
TVLDPVTGDLSDTR	0	1	Unmodified	1487.7468	0.74675201	509	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					19.272	19.272	2	0.0024146	9413	DP1063-1	109.24	63.235			NaN	NaN	NaN	0	0	Median	3948100	0	3948100	3345	509	3146	6943	15264	15264		1	9606
TVLDQQQTPSR	0	1	Unmodified	1271.647	0.64697839	279	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	2	0		1				14.761	14.761	2	0.0013752	5056	DP1063-2	112.11	32.959			1.2875	0.96259	NaN	1	0	Median	7885000	3475500	4409500	3346	279	3147	6944	15265;15266;15267	15265		3	9606
TVLIMELINNVAK	1	0	Unmodified	1456.8323	0.83233632	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		24.733	24.733	2	0.0010217	19722	DP1063-3	121.83	93.103			NaN	NaN	NaN	0	0	Median	3307700	0	3307700	3347	121	3148	6945;6946	15268;15269;15270	15269		3	9606
TVLPFSQEFQR	0	1	Unmodified	1350.6932	0.6932003	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				20.634	20.634	2	0.013467	13029	DP1063-2	79.986	42.437			0.84218	0.60887	NaN	1	0	Median	21192000	11242000	9949900	3348	543	3149	6947	15271;15272	15272		2	9606
TVMENFVAFVDK	1	0	Oxidation (M)	1414.6803	0.68025235	14	CON__P02769			yes	yes	0	1	0	2.83	0.898	1		4	1		24.428	24.428	2	7.0385E-05	14408	DP1063-3	134.84	93.445		+	NaN	NaN	NaN	0	0	Median	356860000	356860000	0	3349	14	3150	6948;6949;6950;6951;6952;6953	15273;15274;15275;15276;15277;15278;15279;15280	15275	15	8	9606
TVMENFVAFVDK	1	0	Unmodified	1398.6853	0.68533773	14	CON__P02769			yes	yes	0	0	0	2.6	0.8	1		4			22.853	22.853	2	2.7717E-06	17345	DP1063-3	171.85	123.76		+	NaN	NaN	NaN	0	0	Median	162180000	162180000	0	3350	14	3150	6954;6955;6956;6957;6958	15281;15282;15283;15284;15285;15286;15287	15284		7	9606
TVPEELVKPEELSK	2	0	Unmodified	1596.8611	0.86105349	655	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	1	3	0			1			17.619	17.619	3	0.021739	10411	DP1063-3	76.759	38.179			NaN	NaN	NaN	0	0	Median	8241400	0	8241400	3351	655	3151	6959	15288	15288		1	9606
TVPFCSTFAAFFTR	0	1	Unmodified	1650.7864	0.78644876	227	P29401	TKT	Transketolase	yes	yes	0	0	0	3	0			1			24.441	24.441	2	0.018503	19424	DP1063-3	69.815	69.815			2.1391	1.6217	NaN	1	0	Median	8369100	2779600	5589500	3352	227	3152	6960	15289	15289		1	9606
TVPPAVTGITFLSGGQSEEEASINLNAINK	1	0	Unmodified	3056.5666	0.56660939	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		22.99	22.99	3	2.2928E-07	16900	DP1063-4	70.051	70.051			1.4047	0.97231	NaN	1	0	Median	5391200	1942800	3448500	3353	98	3153	6961	15290;15291;15292	15291		3	9606
TVPVEAVTSK	1	0	Unmodified	1029.5706	0.57062555	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	3	0			1			15.319	15.319	2	0.0068229	7292	DP1063-3	99.013	64.84			NaN	NaN	NaN	0	0	Median	24852000	0	24852000	3354	488	3154	6962	15293;15294	15294		2	9606
TVQGPPTSDDIFER	0	1	Unmodified	1560.742	0.74200098	100	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	4	0				1		18.755	18.755	2	1.806E-06	11526	DP1063-4	155.48	108.18			NaN	NaN	NaN	0	0	Median	0	0	0	3355	100	3155	6963	15295	15295		1	9606
TVQGSGHQEHINIHK	1	0	Unmodified	1683.8441	0.84411507	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	2.5	0.5		1	1			12.617	12.617	3	0.0088392	3862	DP1063-3	81.904	21.355			NaN	NaN	NaN	0	0	Median	20381000	0	20381000	3356	488	3156	6964;6965	15296;15297;15298	15298		3	9606
TVQIEASTVEIEER	0	1	Unmodified	1602.8101	0.81008055	498	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	4	0				1		18.368	18.368	2	1.2077E-11	10979	DP1063-4	209.19	154.65			NaN	NaN	NaN	0	0	Median	13768000	0	13768000	3357	498	3157	6966	15299;15300	15300		2	9606
TVQSLEIDLDSMR	0	1	Unmodified	1505.7396	0.73955814	118	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	4	0				1		21.203	21.203	2	0.0014277	14797	DP1063-4	107.11	107.11			2.5251	1.5629	NaN	1	0	Median	9585500	2358800	7226800	3358	118	3158	6967	15301;15302	15301		2	9606
TVQSLEIDLDSMR	0	1	Oxidation (M)	1521.7345	0.73447277	118	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	1	0	4	0				1		19.471	19.471	2	7.4005E-05	12537	DP1063-4	141.08	105.43			NaN	NaN	NaN	0	0	Median	20332000	0	20332000	3359	118	3158	6968	15303;15304	15304	103	2	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	0	Oxidation (M)	2944.4488	0.44880244	125	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	4	0				1		21.16	21.16	3	3.6321E-12	14717	DP1063-4	118.09	95.376			3.095	3.2142	NaN	1	0	Median	9965800	2907700	7058100	3360	125	3159	6969	15305;15306;15307;15308	15307	119	4	9606
TVTAMDVVYALK	1	0	Oxidation (M)	1325.6901	0.69008876	386	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	5	0					3	20.09	20.09	2	0.00046396	13263	DP1063-5	116.3	86.638			1.5347	1.2991	NaN	1	0	Median	100010000	36647000	63367000	3361	386	3160	6970;6971;6972	15309;15310;15311;15312	15309	478	4	9606
TVTAMDVVYALKR	1	1	Oxidation (M)	1481.7912	0.79119978	386	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					3	18.947	18.947	2;3	0.00014365	11916	DP1063-5	137.01	137.01			1.7401	1.4835	4.2208	2	0	Median	119890000	47856000	72035000	3362	386	3161	6973;6974;6975	15313;15314;15315;15316;15317;15318;15319	15316	478	7	9606
TVTAMDVVYALKR	1	1	Unmodified	1465.7963	0.79628516	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	20.472	20.472	3	0.00013808	13933	DP1063-5	126.34	126.34			1.6612	1.4162	NaN	1	0	Median	25510000	8711600	16798000	3363	386	3161	6976	15320;15321	15321		2	9606
TVTEYKIDEDGKK	3	0	Unmodified	1524.7672	0.7671531	77	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	2	4	0				1		13.948	13.948	3	0.027771	5231	DP1063-4	49.929	22.067			1.524	1.594	NaN	1	0	Median	4381300	1265500	3115900	3364	77	3162	6977	15322	15322		1	9606
TVTNAVVTVPAYFNDSQR	0	1	Unmodified	1980.9905	0.99050453	153	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3.33	0.471			2	1		20.286	20.286	2;3	7.222100000000001E-24	13897	DP1063-3	214.61	188.2			2.9311	2.3212	16.297	2	0	Median	152870000	38042000	114830000	3365	153	3163	6978;6979;6980	15323;15324;15325;15326;15327;15328;15329;15330;15331	15323		9	9606
TVVGQITVDMMYGGMR	0	1	3 Oxidation (M)	1804.8158	0.81577633	71	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	3	0	4	0				1		18.159	18.159	2	0.055336	10726	DP1063-4	55.291	25.484			NaN	NaN	NaN	0	0	Median	5288300	0	5288300	3366	71	3164	6981	15332	15332		1	9606
TVYGGGCSEMLMAHAVTQLANR	0	1	2 Oxidation (M)	2397.0875	0.087534513	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	2	0	3	0			1			17.757	17.757	3	1.3779E-07	10566	DP1063-3	100.46	100.46			3.4066	2.5656	NaN	1	0	Median	34622000	9930900	24691000	3367	419	3165	6982	15333;15334	15333	523;524	2	9606
TVYSHLFDHVVNR	0	1	Unmodified	1585.8001	0.80012499	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		2				18.349	18.349	2;3	8.0513E-13	9867	DP1063-2	211.37	169.67			NaN	NaN	NaN	0	0	Median	78138000	0	78138000	3368	654	3166	6983;6984	15335;15336;15337;15338	15337		4	9606
TWEQQQEVVSR	0	1	Unmodified	1388.6684	0.66844211	649	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	3	0			1			16.275	16.275	2	0.0013235	8582	DP1063-3	125.97	84.975			NaN	NaN	NaN	0	0	Median	7796100	0	7796100	3369	649	3167	6985	15339	15339		1	9606
TYDPSGDSTLPTCSK	1	0	Unmodified	1627.7036	0.70356657	669	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			16.239	16.239	2	0.028521	8547	DP1063-3	81.709	54.38			NaN	NaN	NaN	0	0	Median	5607000	0	5607000	3370	669	3168	6986	15340	15340		1	9606
TYGEPESAGPSR	0	1	Unmodified	1249.5575	0.55749468	316	P50402	EMD	Emerin	yes	yes	0	0	0	4	0				2		14.318	14.318	2	0.017767	5708	DP1063-4	85.958	46.705			NaN	NaN	NaN	0	0	Median	0	0	0	3371	316	3169	6987;6988	15341;15342	15342		2	9606
TYQAIKDFNR	1	1	Unmodified	1254.6357	0.63568542	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.25	1.3	2		1	1		15.869	15.869	2;3	1.0301E-05	5558	DP1063-1	130.66	115.78			1.369	1.2765	4.0973	4	0	Median	141940000	57858000	84082000	3372	460	3170	6989;6990;6991;6992	15343;15344;15345;15346;15347;15348;15349;15350;15351;15352;15353	15346		10	9606
TYSVVPMTSR	0	1	Oxidation (M)	1155.5594	0.55940893	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					16.147	16.147	2	0.031202	5828	DP1063-1	61.78	39.648			1.5827	1.2825	NaN	1	0	Median	4265300	2268200	1997200	3373	420	3171	6993	15354	15354	532	1	9606
TYSYLTPDLWK	1	0	Unmodified	1385.6867	0.68671794	172	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		21.709	21.709	2	2.27E-05	15351	DP1063-4	132.01	132.01			2.1641	1.4979	NaN	1	0	Median	14213000	4700700	9512400	3374	172	3172	6994	15355;15356	15355		2	9606
VAAGLQIK	1	0	Unmodified	798.49634	0.49633839	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				15.78	15.78	2	0.029946	6442	DP1063-2	89.673	36.152			NaN	NaN	NaN	0	0	Median	14346000	0	14346000	3375	495	3173	6995	15357	15357		1	9606
VAALQNLVK	1	0	Unmodified	954.58622	0.58621603	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				17.989	17.989	2	0.010091	9342	DP1063-2	94.262	70.493			2.4634	2.0609	NaN	1	0	Median	20598000	5386500	15211000	3376	495	3174	6996	15358;15359	15358		2	9606
VAASNIVQMK	1	0	Oxidation (M)	1075.5696	0.56957969	312	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	1	0	5	0					1	14.639	14.639	2	0.0046849	6681	DP1063-5	87.639	87.639			1.3632	1.1539	NaN	1	0	Median	5324700	2324400	3000300	3377	312	3175	6997	15360;15361	15360	378	2	9606
VACIGAWHPAR	0	1	Unmodified	1236.6186	0.61859557	266	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	4	0				1		16.331	16.331	3	0.0033141	8436	DP1063-4	70.399	70.399			1.9269	1.2917	NaN	1	0	Median	17902000	6888700	11014000	3378	266	3176	6998	15362;15363;15364	15364		3	9606
VADIGLAAWGR	0	1	Unmodified	1127.6087	0.60874239	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	4	0				1		20.393	20.393	2	8.5631E-05	13752	DP1063-4	133.23	86.153			NaN	NaN	NaN	0	0	Median	9986100	0	9986100	3379	201	3177	6999	15365;15366	15366		2	9606
VADMALHYANK	1	0	Oxidation (M)	1247.5969	0.59685707	319	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	3	0			2			14.43	14.43	2;3	1.7005E-05	6046	DP1063-3	147.2	112.05			6.2035	4.9814	NaN	1	0	Median	30844000	2646000	28198000	3380	319	3178	7000;7001	15367;15368;15369;15370	15369	384	4	9606
VADYCENNYIQATDK	1	0	Unmodified	1802.7781	0.77812849	551	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	3	0			2			17.313	17.313	2	0.00083026	9964	DP1063-3	151.98	109.17			NaN	NaN	NaN	0	0	Median	6352800	0	6352800	3381	551	3179	7002;7003	15371;15372;15373	15371		3	9606
VAEDEAEAAAAAK	1	0	Unmodified	1244.5885	0.58846046	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2.5	0.5		1	1			14.886	14.886	2	0.00056921	6647	DP1063-3	151.22	120.65			1.8703	1.533	16.116	2	0	Median	26656000	8747300	17908000	3382	134	3180	7004;7005	15374;15375;15376;15377	15376		4	9606
VAEIEHAEKEK	2	0	Unmodified	1281.6565	0.65648044	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	3	0			1			12.577	12.577	3	0.0002473	3812	DP1063-3	121.36	121.36			3.4542	3.0991	NaN	1	0	Median	13664000	2965200	10699000	3383	419	3181	7006	15378;15379	15378		2	9606
VAGMDVELTVEER	0	1	Oxidation (M)	1462.6974	0.69735898	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	0	4	0				1		17.629	17.629	2	1.9001E-05	9927	DP1063-4	164.64	146.78			2.441	1.6491	NaN	1	0	Median	19029000	5723300	13306000	3384	371	3182	7007	15380;15381;15382;15383	15381	464	4	9606
VAGSPGWVR	0	1	Unmodified	927.49265	0.49265	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				16.354	16.354	2	0.0010644	7262	DP1063-2	125.81	61.057			NaN	NaN	NaN	0	0	Median	12772000	0	12772000	3385	134	3183	7008	15384;15385	15385		2	9606
VAIAALEVLEEENLAENADK	1	0	Unmodified	2140.0899	0.089943804	100	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	4	0				1		23.053	23.053	2	1.4616E-12	16943	DP1063-4	206.66	145.42			NaN	NaN	NaN	0	0	Median	2501200	0	2501200	3386	100	3184	7009	15386;15387;15388	15386		3	9606
VAIEHLDK	1	0	Unmodified	923.50763	0.50763136	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			14.338	14.338	2	0.042742	5915	DP1063-3	77.923	24.213			3.9338	3.1588	NaN	1	0	Median	15389000	3109100	12279000	3387	301	3185	7010	15389	15389		1	9606
VAKENNVDAVHPGYGFLSER	1	1	Unmodified	2201.0865	0.086530182	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				17.49	17.49	3;4	0.0016903	8673	DP1063-2	70.907	53.482			1.2298	1.1585	4.2762	2	0	Median	53558000	22304000	31254000	3388	154	3186	7011;7012	15390;15391;15392	15392		3	9606
VALTGLTVAEYFR	0	1	Unmodified	1438.782	0.78201531	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			22.619	22.619	2	2.189E-05	17148	DP1063-3	169.37	169.37			2.2503	1.6038	NaN	1	0	Median	16930000	5478000	11452000	3389	121	3187	7013	15393;15394;15395	15393		3	9606
VANPSGNLTETYVQDR	0	1	Unmodified	1762.8486	0.84859132	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					17.616	17.616	2	3.9054E-21	7380	DP1063-1	212.1	212.1			12.969	11.08	NaN	1	0	Median	34955000	2693600	32261000	3390	190	3188	7014	15396;15397;15398;15399	15397		4	9606
VANVSLLALYK	1	0	Unmodified	1189.7071	0.70705945	373	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	20.884	20.884	2	0.00093806	14470	DP1063-5	116.37	116.37			2.4283	2.0556	NaN	1	0	Median	24090000	7543400	16547000	3391	373	3189	7015	15400;15401;15402;15403	15401		4	9606
VAPAPAVVK	1	0	Unmodified	850.52764	0.52763852	382	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		14.419	14.419	2	0.020055	5797	DP1063-4	80.462	30.872			1.2006	0.83105	NaN	1	0	Median	9758100	4185300	5572800	3392	382	3190	7016	15404;15405;15406	15405		3	9606
VAPDEHPILLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	528	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	0	4	0				1		18.486	18.486	3	0.00093362	11029	DP1063-4	60.542	3.7428			1.9206	1.3294	NaN	1	0	Median	228290000	80539000	147750000	3393	528	3191	7017	15407;15408	15407		2	9606
VAPEEHPVLLTEAPLNPK	1	0	Unmodified	1953.0571	0.057127534	349;409	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				2		18.486	18.486	2;3	2.5708000000000002E-33	11115	DP1063-4	234.04	80.542			1.9926	1.3792	5.207	2	0	Median	271310000	95817000	175490000	3394	349;409	3192	7018;7019	15409;15410;15411;15412;15413;15414;15415	15412		7	9606
VAQGVSGAVQDK	1	0	Unmodified	1157.6041	0.60405094	160	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	3	0			1			13.901	13.901	2	0.012708	5377	DP1063-3	82.417	59.775			2.2266	1.788	NaN	1	0	Median	8720400	2637900	6082500	3395	160	3193	7020	15416;15417	15416		2	9606
VAQLEQVYIR	0	1	Unmodified	1217.6768	0.67682195	380	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	18.34	18.34	2	4.5316E-07	11208	DP1063-5	160.88	101.9			2.3079	1.7236	NaN	1	0	Median	36864000	10879000	25985000	3396	380	3194	7021	15418;15419;15420;15421	15421		4	9606
VAQPTITDNKDGTVTVR	1	1	Unmodified	1813.9534	0.95339074	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	2					16.025	16.025	2;3	0.0004791	5412	DP1063-1	160.8	122.43			NaN	NaN	NaN	0	0	Median	5397900	0	5397900	3397	190	3195	7022;7023	15422;15423;15424;15425	15422		4	9606
VASGCLDINSSVK	1	0	Unmodified	1348.6657	0.66566492	111	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.72	16.72	2	3.7565E-08	9079	DP1063-3	178.54	144.62			1.4672	1.0938	9.1571	2	0	Median	358660000	143510000	215150000	3398	111	3196	7024;7025	15426;15427;15428;15429;15430;15431;15432;15433;15434	15428		9	9606
VASLEESEGNKQDLK	2	0	Unmodified	1645.8159	0.81589421	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			14.557	14.557	2	4.4762E-29	6226	DP1063-3	229.68	180.68			1.1984	1.0752	NaN	1	0	Median	8382000	3472900	4909100	3399	449	3197	7026	15435;15436;15437;15438	15437		4	9606
VASQGEVVR	0	1	Unmodified	943.50869	0.50869399	131	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	0	1					13.329	13.329	2	5.4611E-05	2698	DP1063-1	139.97	34.403			1.2571	1.039	NaN	1	0	Median	3347500	1437900	1909600	3400	131	3198	7027	15439;15440;15441	15440		3	9606
VATAQDDITGDGTTSNVLIIGELLK	1	0	Unmodified	2543.333	0.33302762	268	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			24.154	24.154	2	0.00080156	19072	DP1063-3	89.604	68.895			NaN	NaN	NaN	0	0	Median	3402100	0	3402100	3401	268	3199	7028	15442;15443	15442		2	9606
VATVSLPR	0	1	Unmodified	841.50215	0.50215205	10	CON__P00761			yes	yes	0	0	0	3	1.29	1	1	2	1	1	14.691	14.691	2	0.00099202	23434	DP1063-5	143.85	46.786		+	NaN	NaN	NaN	0	0	Median	89948000000	89948000000	0	3402	10	3200	7029;7030;7031;7032;7033;7034	15444;15445;15446;15447;15448;15449;15450;15451;15452;15453;15454;15455;15456;15457;15458;15459;15460;15461;15462;15463;15464;15465;15466;15467;15468;15469;15470;15471;15472;15473;15474;15475;15476;15477;15478;15479;15480;15481;15482;15483;15484;15485;15486;15487;15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498;15499;15500;15501;15502;15503;15504;15505;15506;15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533;15534;15535;15536;15537;15538;15539;15540;15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557;15558;15559;15560;15561;15562;15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15600;15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631;15632;15633;15634;15635;15636;15637;15638;15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655;15656;15657;15658;15659;15660;15661;15662;15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674;15675;15676;15677;15678;15679;15680;15681;15682;15683;15684;15685;15686;15687;15688;15689;15690;15691;15692;15693;15694;15695;15696;15697;15698;15699;15700;15701;15702;15703;15704;15705;15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723;15724;15725;15726;15727;15728;15729;15730;15731;15732;15733;15734;15735;15736;15737;15738;15739;15740;15741;15742;15743;15744;15745;15746	15712		303	
VATWFNQPAR	0	1	Unmodified	1188.604	0.60399136	214	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					3	18.593	18.593	2	0.00076249	11531	DP1063-5	148.04	111.34			NaN	NaN	NaN	0	0	Median	18055000	0	18055000	3403	214	3201	7035;7036;7037	15747;15748;15749;15750	15748		4	9606
VAVLGASGGIGQPLSLLLK	1	0	Unmodified	1792.0822	0.082220072	270	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		23.848	23.848	2	0.00030201	17877	DP1063-4	129.17	97.573			NaN	NaN	NaN	0	0	Median	2849500	0	2849500	3404	270	3202	7038	15751;15752	15751		2	9606
VAVPLLSSGGQVAVLELR	0	1	Unmodified	1807.0567	0.056733603	343	P57737	CORO7	Coronin-7	yes	yes	0	0	0	2	0		1				23.053	23.053	2	0.00099028	16115	DP1063-2	115.8	87.04			NaN	NaN	NaN	0	0	Median	2111900	0	2111900	3405	343	3203	7039	15753;15754	15753		2	9606
VAVQGDVVR	0	1	Unmodified	941.52943	0.52942943	131	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	2	0		1				14.975	14.975	2	0.010068	5388	DP1063-2	94.302	24.035			2.3106	1.6885	NaN	1	0	Median	10286000	3694100	6591500	3406	131	3204	7040	15755;15756	15756		2	9606
VAVTEGCQPSR	0	1	Unmodified	1202.5714	0.5713706	70	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	0	1					13.919	13.919	2	0.00063097	3335	DP1063-1	120.99	97.56			2.9838	2.5541	NaN	1	0	Median	2180900	703370	1477600	3407	70	3205	7041	15757;15758	15757		2	9606
VAVVAGYGDVGK	1	0	Unmodified	1133.6081	0.60807369	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	4	0				1		16.981	16.981	2	0.012389	9113	DP1063-4	82.831	49.938			2.6712	1.849	NaN	1	0	Median	16340000	4415600	11924000	3408	201	3206	7042	15759;15760;15761;15762	15759		4	9606
VAYVSFGPHAGK	1	0	Unmodified	1231.635	0.63495714	318	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	16.452	16.452	2	0.01097	8825	DP1063-5	90.15	58.621			NaN	NaN	NaN	0	0	Median	0	0	0	3409	318	3207	7043	15763	15763		1	9606
VCEEIAIIPSKK	2	0	Unmodified	1385.7588	0.75883702	137	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	1	5	0					1	16.862	16.862	3	0.024651	9215	DP1063-5	46.481	26.051			1.8969	1.8535	NaN	1	0	Median	10847000	3762100	7084600	3410	137	3208	7044	15764	15764		1	9606
VCENIPIVLCGNK	1	0	Unmodified	1514.7585	0.75851945	387	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	19.249	19.249	2	0.00082667	12368	DP1063-5	124.42	105.61			3.5495	3.0047	NaN	1	0	Median	16590000	4630400	11959000	3411	387	3209	7045	15765;15766	15765		2	9606
VCTLAIIDPGDSDIIR	0	1	Unmodified	1756.9029	0.90293508	395	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	21.739	21.739	2	0.0014761	15559	DP1063-5	130.44	103.11			1.7596	1.3142	NaN	1	0	Median	17605000	5312400	12293000	3412	395	3210	7046	15767;15768;15769;15770	15769		4	9606
VDENGPELLPR	0	1	Unmodified	1237.6303	0.63026569	567	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					18.192	18.192	2	0.0083827	8121	DP1063-1	93.649	40.933			NaN	NaN	NaN	0	0	Median	2115600	0	2115600	3413	567	3211	7047	15771;15772	15771		2	9606
VDIDAPDVDVHGPDWHLK	1	0	Unmodified	2026.9749	0.97485447	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	2	0		1				19.214	19.214	4	0.0010315	11055	DP1063-2	104.78	72.034			NaN	NaN	NaN	0	0	Median	14895000	0	14895000	3414	455	3212	7048	15773	15773		1	9606
VDIEAPDVSLEGPEGK	1	0	Unmodified	1653.8097	0.8097462	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	0	1					19.672	19.672	2	0.00055294	9964	DP1063-1	139.19	110.39			NaN	NaN	NaN	0	0	Median	2479200	0	2479200	3415	455	3213	7049	15774;15775	15775		2	9606
VDIEGPDVNIEGPEGK	1	0	Unmodified	1666.805	0.80499517	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	0	1					19.006	19.006	2	0.00041672	9111	DP1063-1	153.75	109.14			NaN	NaN	NaN	0	0	Median	3368200	0	3368200	3416	455	3214	7050	15776;15777;15778	15777		3	9606
VDIETPNLEGTLTGPR	0	1	Unmodified	1710.8788	0.87882882	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1.5	0.5	1	1				20.41	20.41	2	0.00041972	12692	DP1063-2	135.02	88.222			NaN	NaN	NaN	0	0	Median	10705000	0	10705000	3417	455	3215	7051;7052	15779;15780;15781;15782	15781		4	9606
VDIGDTIIYLVH	0	0	Unmodified	1356.7289	0.7289171	640	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				24.269	24.269	2	0.0017055	17574	DP1063-2	145.63	103.76			NaN	NaN	NaN	0	0	Median	0	0	0	3418	640	3216	7053	15783;15784	15783		2	9606
VDKGVVPLAGTNGETTTQGLDGLSER	1	1	Unmodified	2613.3246	0.3245882	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	4	0				1		18.797	18.797	3	0.0029267	11590	DP1063-4	73.805	42.629			NaN	NaN	NaN	0	0	Median	2997200	0	2997200	3419	98	3217	7054	15785	15785		1	9606
VDKLDASESLR	1	1	Unmodified	1231.6408	0.64083038	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	1	0	1					15.27	15.27	3	0.053355	4855	DP1063-1	37.613	25.555			1.7256	1.609	NaN	1	0	Median	3138700	1242900	1895800	3420	428	3218	7055	15786	15786		0	9606
VDLLNQEIEFLK	1	0	Unmodified	1459.7922	0.79224564	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.5	1.12	1	1	1	1		23.068	23.068	2	4.6923E-12	17673	DP1063-3	210.08	161.47		+	NaN	NaN	NaN	0	0	Median	73766000	73766000	0	3421	22	3219	7056;7057;7058;7059	15787;15788;15789;15790;15791;15792;15793	15791		7	9606
VDNDENEHQLSLR	0	1	Unmodified	1567.7227	0.72266253	125	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				2		15.261	15.261	2;3	9.5432E-13	6895	DP1063-4	211.26	167.61			2.8363	2.1309	NaN	1	0	Median	52220000	12893000	39328000	3422	125	3220	7060;7061	15794;15795;15796;15797	15796		4	9606
VDNSSLTGESEPQTR	0	1	Unmodified	1618.7435	0.74345755	107	P05023;P13637;P50993;P20648	ATP1A1;ATP1A3;ATP1A2;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1	yes	no	0	0	0	1.5	0.5	1	1				15.197	15.197	2	8.6209E-14	5578	DP1063-2	201	176.15			1.8524	1.4469	10.31	2	0	Median	14523000	5359800	9163000	3423	107	3221	7062;7063	15798;15799;15800;15801;15802;15803;15804;15805	15802		8	9606
VDPVYIHLAER	0	1	Unmodified	1310.6983	0.69828568	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.29	1.28	3	1	1	2		18.121	18.121	2;3	1.3591E-06	8038	DP1063-1	144.77	121.25			1.2309	1.1815	16.187	6	0	Linear	327080000	149420000	177650000	3424	460	3222	7064;7065;7066;7067;7068;7069;7070	15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825	15813		20	9606
VDSGIQPGSDISIYYDPMISK	1	0	Oxidation (M)	2300.0882	0.088229245	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		20.96	20.96	2	4.41E-06	14898	DP1063-3	143.93	143.93			1.3648	1.1186	15.955	2	0	Median	222100000	96496000	125600000	3425	110	3223	7071;7072;7073	15826;15827;15828;15829;15830;15831;15832;15833;15834;15835;15836	15831	94	11	9606
VDSGIQPGSDISIYYDPMISK	1	0	Unmodified	2284.0933	0.093314623	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			22.058	22.058	2	1.6266E-06	16341	DP1063-3	157.23	157.23			1.1914	0.95667	NaN	1	0	Median	56202000	23017000	33186000	3426	110	3223	7074;7075	15837;15838;15839;15840;15841;15842;15843	15841		7	9606
VDTNAPDLSLEGPEGK	1	0	Unmodified	1640.7893	0.78934511	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	0	1					18.451	18.451	2	0.00029847	8423	DP1063-1	133.88	79.093			NaN	NaN	NaN	0	0	Median	3459200	0	3459200	3427	455	3224	7076	15844;15845	15845		2	9606
VDVADQAQDKDRDDR	1	2	Unmodified	1744.7976	0.79761838	203	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	2	2	0		1				13.264	13.264	3	0.010641	3196	DP1063-2	100.19	71.89			NaN	NaN	NaN	0	0	Median	3346300	0	3346300	3428	203	3225	7077	15846	15846		1	9606
VDVAVNCAGIAVASK	1	0	Unmodified	1472.7657	0.76571331	599	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	5	0					1	18.066	18.066	2	0.0037133	10877	DP1063-5	102.87	60.537			NaN	NaN	NaN	0	0	Median	2917000	0	2917000	3429	599	3226	7078	15847	15847		1	9606
VDVDVPDVNIEGPDAK	1	0	Unmodified	1680.8206	0.82064524	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	0	1					19.705	19.705	2	0.043808	9984	DP1063-1	78.529	43.774			NaN	NaN	NaN	0	0	Median	4375600	0	4375600	3430	455	3227	7079	15848;15849	15848		2	9606
VDVEVPDVSLEGPEGK	1	0	Unmodified	1667.8254	0.82539626	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	2	0		1				20.173	20.173	2	0.0011465	12376	DP1063-2	116.71	72.396			NaN	NaN	NaN	0	0	Median	11642000	0	11642000	3431	455	3228	7080	15850	15850		1	9606
VDVGKDQEFTVK	2	0	Unmodified	1363.6983	0.69834526	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	2					16.081	16.081	2;3	8.0644E-05	5755	DP1063-1	153.54	113.48			11.378	11.435	NaN	1	0	Median	21395000	1177200	20217000	3432	190	3229	7081;7082	15851;15852;15853;15854	15854		4	9606
VDWQENDFSK	1	0	Unmodified	1266.5517	0.55168102	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		18.171	18.171	2	6.56E-07	8060	DP1063-1	159.58	140.48			1.3471	1.3729	16.641	4	0	Linear	530850000	222130000	308710000	3433	460	3230	7083;7084;7085;7086	15855;15856;15857;15858;15859;15860;15861;15862;15863;15864;15865;15866;15867;15868;15869;15870	15855		16	9606
VDWQENDFSKR	1	1	Unmodified	1422.6528	0.65279205	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	1.22	2	1		1		16.931	16.931	2;3	9.0967E-07	6590	DP1063-1	154.01	119.83			1.3507	1.2594	5.4909	4	0	Median	227950000	96608000	131340000	3434	460	3231	7087;7088;7089;7090	15871;15872;15873;15874;15875;15876;15877;15878;15879;15880	15876		9	9606
VEAQLQELQVK	1	0	Unmodified	1283.7085	0.70851601	252	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					17.898	17.898	2	0.018413	7770	DP1063-1	83.647	26.049			NaN	NaN	NaN	0	0	Median	1528400	0	1528400	3435	252	3232	7091	15881	15881		1	9606
VEAQVYILSK	1	0	Unmodified	1148.6441	0.64412484	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				2		18.398	18.398	2	0.0087648	11010	DP1063-4	137.98	77.54			NaN	NaN	NaN	0	0	Median	0	0	0	3436	306	3233	7092;7093	15882;15883	15882		2	9606
VEDAADSATKPENLSSK	2	0	Unmodified	1760.8428	0.84283724	284	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				14.368	14.368	3	0.0076174	4611	DP1063-2	90.348	50.663			NaN	NaN	NaN	0	0	Median	5885700	0	5885700	3437	284	3234	7094	15884;15885	15885		2	9606
VEEQEPELTSTPNFVVEVIK	1	0	Unmodified	2286.1631	0.16310875	448	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		22.365	22.365	2	0.0093684	16153	DP1063-4	92.952	33.725			NaN	NaN	NaN	0	0	Median	0	0	0	3438	448	3235	7095	15886	15886		1	9606
VEFMDDTSR	0	1	Oxidation (M)	1114.4601	0.46008882	393	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	1	0	5	0					1	15.167	15.167	2	0.035529	7297	DP1063-5	88.37	53.014			NaN	NaN	NaN	0	0	Median	8469100	0	8469100	3439	393	3236	7096	15887;15888	15887	485	2	9606
VEGPGSLGLEESGSR	0	1	Unmodified	1472.7107	0.71070086	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		17.493	17.493	2	0.0031042	9868	DP1063-4	106.49	70.533			NaN	NaN	NaN	0	0	Median	3094600	0	3094600	3440	458	3237	7097	15889;15890	15890		2	9606
VEGRPGASLPPLDLQALEK	1	1	Unmodified	1989.0895	0.089490294	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.56	0.956	1	4	2	2		22.752	22.752	2;3	7.0761E-11	12501	DP1063-2	157.58	115.96			1.0127	0.96835	4.2082	7	0	Median	898770000	412060000	486710000	3441	154	3238	7098;7099;7100;7101;7102;7103;7104;7105;7106	15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911	15896		21	9606
VEGRPGASLPPLDLQALEKELVDR	1	2	Unmodified	2601.4126	0.41261535	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	2	2	0		1				22.48	22.48	4	8.8511E-08	15405	DP1063-2	127.96	108.41			0.99436	1.1282	NaN	1	0	Median	21268000	9135000	12133000	3442	154	3239	7107	15912;15913;15914	15914		3	9606
VEGTEPTTAFNLFVGNLNFNK	1	0	Unmodified	2311.1485	0.14846174	187	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				24.359	24.359	2	1.8652E-25	17704	DP1063-2	215.51	193.41			1.5226	1.2739	NaN	1	0	Median	8081000	2698200	5382800	3443	187	3240	7108	15915;15916;15917	15915		3	9606
VEHHFQQAHYDK	1	0	Unmodified	1537.7062	0.7062246	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					12.656	12.656	3	0.0015145	1963	DP1063-1	87.216	62.865			1.7279	1.5541	NaN	1	0	Median	1222200	414680	807510	3444	43	3241	7109	15918	15918		1	9606
VEIAGPGFINVHLR	0	1	Unmodified	1520.8463	0.8463469	333	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			19.973	19.973	3	0.012282	13682	DP1063-3	78.324	53.389			NaN	NaN	NaN	0	0	Median	6360400	0	6360400	3445	333	3242	7110	15919;15920	15919		2	9606
VEIATLTR	0	1	Unmodified	901.52328	0.52328142	211	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	4	0				1		17.082	17.082	2	0.011136	9272	DP1063-4	110.31	67.914			1.0824	0.67327	NaN	1	0	Median	7760300	3113900	4646400	3446	211	3243	7111	15921	15921		1	9606
VEILANDQGNR	0	1	Unmodified	1227.6208	0.62076364	176	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	3.36	0.771		1	6	3	1	18.175	18.175	2	1.2355E-13	7471	DP1063-3	195.05	0			2.4312	2.0195	62.073	2	0	Median	805110000	172150000	632950000	3447	176	3244	7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122	15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938;15939;15940;15941	15924		19	9606
VELCSFSGYK	1	0	Unmodified	1188.5485	0.5485099	421	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	18.392	18.392	2	0.0058728	11249	DP1063-5	93.178	58.972			2.0198	1.7097	NaN	1	0	Median	7149200	2033800	5115500	3448	421	3245	7123	15942;15943	15942		2	9606
VEPGLGADNSVVR	0	1	Unmodified	1311.6783	0.67827852	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					16.83	16.83	2	0.047988	6433	DP1063-1	74.611	30.262			NaN	NaN	NaN	0	0	Median	13987000	0	13987000	3449	190	3246	7124	15944	15944		1	9606
VEQQPDYR	0	1	Unmodified	1033.4829	0.48287317	338	P55196	MLLT4	Afadin	yes	yes	0	0	0	1	0	1					13.673	13.673	2	0.010896	3051	DP1063-1	101.6	62.348			NaN	NaN	NaN	0	0	Median	1535300	0	1535300	3450	338	3247	7125	15945	15945		1	9606
VESGDPSLHPPPSPGTPSATPASPPASATPSQR	0	1	Unmodified	3176.5374	0.53743452	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	1		2		2		16.765	16.765	3	5.8271E-13	8855	DP1063-4	150.4	125.18			NaN	NaN	NaN	0	0	Median	14513000	9063200	5450100	3451	524	3248	7126;7127;7128;7129	15946;15947;15948;15949;15950;15951;15952	15950		7	9606
VETEQAEIQELK	1	0	Unmodified	1415.7144	0.71438925	308	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	3	0			1			15.456	15.456	3	0.018732	7325	DP1063-3	70.488	18.647			NaN	NaN	NaN	0	0	Median	144980000	144980000	0	3452	308	3249	7130	15953	15953		1	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Oxidation (M)	2530.3717	0.37166174	412	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	3	1.22	1		1	2		20.317	20.317	2;3	1.054E-08	13608	DP1063-4	145.82	127.46			2.013	2.0228	9.9777	4	0	Median	124650000	37318000	87331000	3453	412	3250	7131;7132;7133;7134	15954;15955;15956;15957;15958;15959;15960;15961;15962;15963;15964	15964	506	11	9606
VETGVLKPGMVVTFAPVNVTTEVK	2	0	Unmodified	2514.3767	0.37674711	412	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	4	0				1		21.118	21.118	3	1.2295E-07	14709	DP1063-4	100.14	100.14			1.9479	2.0229	NaN	1	0	Median	29796000	8481800	21314000	3454	412	3250	7135	15965;15966;15967	15966		3	9606
VETQEVNPGASR	0	1	Unmodified	1285.6262	0.62624295	613	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	1	0	1					14.107	14.107	2	0.00015079	3530	DP1063-1	132.25	75.334			NaN	NaN	NaN	0	0	Median	1213300	0	1213300	3455	613	3251	7136	15968;15969	15968		2	9606
VETQFQNGHYDK	1	0	Unmodified	1464.6634	0.66335673	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				14.467	14.467	2;3	6.4079E-20	3925	DP1063-1	244.16	244.16			1.36	1.1778	8.6825	4	0	Median	299990000	128640000	171350000	3456	460	3252	7137;7138;7139;7140	15970;15971;15972;15973;15974;15975;15976;15977;15978;15979;15980;15981;15982;15983;15984	15977		15	9606
VEVGTEVTDYR	0	1	Unmodified	1266.6092	0.6091959	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.23	0.68	31	1	2	1		22.451	22.451	2	2.6255E-09	6823	DP1063-1	178.55	131.47			1.4635	1.2742	21.038	5	0	Median	1103900000	468800000	635090000	3457	460	3253	7141;7142;7143;7144;7145;7146;7147;7148;7149;7150;7151;7152;7153;7154;7155;7156;7157;7158;7159;7160;7161;7162;7163;7164;7165;7166;7167;7168;7169;7170;7171;7172;7173;7174;7175	15985;15986;15987;15988;15989;15990;15991;15992;15993;15994;15995;15996;15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010;16011;16012;16013;16014;16015;16016;16017;16018;16019;16020;16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032;16033;16034;16035;16036;16037;16038;16039;16040;16041;16042	15986		58	9606
VEVTEFEDIK	1	0	Unmodified	1207.5972	0.59723423	148	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				3		19.086	19.086	2	0.0027786	12020	DP1063-4	111.61	62.811			NaN	NaN	NaN	0	0	Median	15051000	0	15051000	3458	148	3254	7176;7177;7178	16043;16044;16045	16043		3	9606
VEYTLGEESEAPGQR	0	1	Unmodified	1663.7689	0.76894402	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1.5	0.5	1	1				17.256	17.256	2	2.6899E-05	6964	DP1063-1	168.22	150.48			4.9379	3.9507	NaN	1	0	Median	5134100	1529600	3604500	3459	442	3255	7179;7180	16046;16047;16048;16049;16050	16048		5	9606
VFCVEEEDSESSLQKR	1	1	Unmodified	1940.8786	0.87857082	490	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				16.8	16.8	3	0.012587	7748	DP1063-2	75.02	37.363			NaN	NaN	NaN	0	0	Median	0	0	0	3460	490	3256	7181	16051	16051		1	9606
VFDYSEYWEGAR	0	1	Unmodified	1520.6572	0.65720872	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				21.225	21.225	2	7.1217E-38	13759	DP1063-2	245.5	245.5			1.4393	1.3607	NaN	1	0	Median	604210000	234440000	369770000	3461	154	3257	7182	16052;16053;16054;16055	16053		4	9606
VFEISPFEPWITR	0	1	Unmodified	1619.8348	0.83477916	521	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	4	0				1		24.18	24.18	2	0.017122	18307	DP1063-4	84.17	57.055			NaN	NaN	NaN	0	0	Median	1800200	0	1800200	3462	521	3258	7183	16056	16056		1	9606
VFEVSLADLQNDEVAFR	0	1	Unmodified	1950.9687	0.96870646	355	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		23.341	23.341	2	1.5144E-15	17302	DP1063-4	208.28	187.22			1.7786	1.1062	NaN	1	0	Median	7766000	2074900	5691100	3463	355	3259	7184	16057;16058;16059;16060;16061	16059		5	9606
VFIGNLNTLVVK	1	0	Unmodified	1315.7864	0.7863724	133	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		21.154	21.154	2	0.00048922	14684	DP1063-4	135.43	135.43			1.7858	1.2361	NaN	1	0	Median	22867000	8699700	14167000	3464	133	3260	7185	16062;16063;16064;16065	16063		4	9606
VFIMDNCEELIPEYLNFIR	0	1	Oxidation (M)	2430.16	0.1599544	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	1	0	2	0		1				25.092	25.092	2	0.0015765	18600	DP1063-2	138.02	111.29			NaN	NaN	NaN	0	0	Median	0	0	0	3465	132	3261	7186	16066	16066	134	1	9606
VFIMDSCDELIPEYLNFIR	0	1	Oxidation (M)	2389.1334	0.1334053	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		1				25.198	25.198	2	0.00048983	18771	DP1063-2	117.79	88.151			NaN	NaN	NaN	0	0	Median	2681400	0	2681400	3466	135	3262	7187	16067;16068	16067	143	2	9606
VFLENVIR	0	1	Unmodified	988.57057	0.57056597	386	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	19.877	19.877	2	4.328E-11	13159	DP1063-5	167.82	109.66			1.6645	1.2431	NaN	1	0	Median	577230000	221770000	355450000	3467	386	3263	7188	16069;16070;16071;16072	16070		4	9606
VFLIDLNSTHGTFLGHIR	0	1	Unmodified	2039.0952	0.095244374	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		21.076	21.076	4	0.0016112	14623	DP1063-4	99.711	79.62			NaN	NaN	NaN	0	0	Median	5731200	0	5731200	3468	458	3264	7189	16073;16074	16073		2	9606
VFQFLNAK	1	0	Unmodified	965.53345	0.53345218	421	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	19.543	19.543	2	0.0045424	12743	DP1063-5	122.79	77.072			2.8099	2.3786	NaN	1	0	Median	33597000	8749600	24847000	3469	421	3265	7190	16075;16076;16077;16078	16076		4	9606
VFSDEVQQQAQLSTIR	0	1	Unmodified	1847.9377	0.93774068	661	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	3	0			2			18.886	18.886	2	0.0005979	12150	DP1063-3	162.22	120.52			NaN	NaN	NaN	0	0	Median	6506100	0	6506100	3470	661	3266	7191;7192	16079;16080	16079		2	9606
VFSGLVSTGLK	1	0	Unmodified	1106.6336	0.63356015	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				19.194	19.194	2	0.0028	11004	DP1063-2	101.65	101.65			2.4978	2.0897	NaN	1	0	Median	44845000	12309000	32536000	3471	165	3267	7193	16081;16082;16083;16084	16082		4	9606
VFSLIQQAVTR	0	1	Unmodified	1260.719	0.71902112	558	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				20.488	20.488	2	0.00081557	12829	DP1063-2	128.86	89.211			NaN	NaN	NaN	0	0	Median	5975900	0	5975900	3472	558	3268	7194	16085	16085		1	9606
VFTTQELVQAFTHAPATLEADR	0	1	Unmodified	2444.2336	0.23358835	86	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		23.566	23.566	3	1.6426999999999998E-21	17558	DP1063-4	199.41	199.41			1.3322	0.95841	NaN	1	0	Median	31144000	13040000	18105000	3473	86	3269	7195	16086;16087;16088;16089;16090	16089		5	9606
VGAHAGEYGAEALER	0	1	Unmodified	1528.727	0.72701962	417	P69905	HBA1	Hemoglobin subunit alpha	yes	yes	0	0	0	5	0					1	16.059	16.059	3	0.0020676	8416	DP1063-5	97.417	1.8473			NaN	NaN	NaN	0	0	Median	13556000	13556000	0	3474	417	3270	7196	16091	16091		1	9606
VGDPQELNGITR	0	1	Unmodified	1297.6626	0.66262845	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	2					17.045	17.045	2	0.00082699	6714	DP1063-1	117.14	83.214			2.48	1.9563	NaN	1	0	Median	11202000	2765700	8436600	3475	303	3271	7197;7198	16092;16093;16094	16092		3	9606
VGEVIVTK	1	0	Unmodified	843.50657	0.50656873	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			15.197	15.197	2	0.050884	7051	DP1063-3	74.301	17.58			2.4593	1.9748	NaN	1	0	Median	25891000	7964400	17927000	3476	151	3272	7199	16095	16095		1	9606
VGEVTYVELLMDAEGK	1	0	Oxidation (M)	1767.8601	0.86006721	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	2.25	0.433		3	1			22.742	22.742	2	0.00021056	15702	DP1063-2	152.38	80.226			1.2085	0.99053	1.0933	2	0	Median	51234000	20388000	30846000	3477	323	3273	7200;7201;7202;7203	16096;16097;16098;16099;16100;16101	16098	414	6	9606
VGEVTYVELLMDAEGK	1	0	Unmodified	1751.8652	0.86515259	323	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2	0		2				23.841	23.841	2	0.01903	17087	DP1063-2	82.85	33.87			NaN	NaN	NaN	0	0	Median	0	0	0	3478	323	3273	7204;7205	16102;16103	16102		2	9606
VGGHAAEYGAEALER	0	1	Unmodified	1528.727	0.72701962	11	CON__P01966			yes	yes	0	0	0	5	0					2	16.059	16.059	2;3	0.00025176	8387	DP1063-5	123.72	25.066		+	NaN	NaN	NaN	0	0	Median	20058000	20058000	0	3479	11	3274	7206;7207	16104;16105	16104		2	
VGGSGVNVNAK	1	0	Unmodified	1000.5302	0.53015772	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	2	0		1				13.49	13.49	2	0.0039221	3516	DP1063-2	105.1	73.341			NaN	NaN	NaN	0	0	Median	5088700	0	5088700	3480	455	3275	7208	16106;16107	16107		2	9606
VGGTSDVEVNEKK	2	0	Unmodified	1360.6834	0.68342347	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	3	0			2			13.101	13.101	2;3	0.0035665	4459	DP1063-3	69.352	69.352			2.6838	2.408	NaN	1	0	Median	9912700	2195000	7717700	3481	151	3276	7209;7210	16108;16109	16108		2	9606
VGHSELVGEIIR	0	1	Unmodified	1307.7197	0.7197494	262	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	3	0			1			17.705	17.705	3	0.034663	10472	DP1063-3	62.14	29.534			NaN	NaN	NaN	0	0	Median	7702300	0	7702300	3482	262	3277	7211	16110	16110		1	9606
VGINYQPPTVVPGGDLAK	1	0	Unmodified	1823.9781	0.97814893	413;605	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		19.817	19.817	2	0.0001544	13325	DP1063-3	145.83	145.83			1.5262	1.1378	9.3024	2	0	Median	443920000	177890000	266030000	3483	413;605	3278	7212;7213	16111;16112;16113;16114;16115;16116;16117;16118	16113		8	9606
VGLQVVAVK	1	0	Unmodified	911.5804	0.58040237	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.547	17.547	2	0.0025198	10259	DP1063-3	117.16	90.04			2.5864	2.0769	NaN	1	0	Median	50187000	15578000	34608000	3484	151	3279	7214	16119;16120;16121	16120		3	9606
VGLTNYAAAYCTGLLLAR	0	1	Unmodified	1926.0033	0.003317824	288	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		22.651	22.651	2	2.6743E-11	16518	DP1063-4	190.57	190.57			2.2998	1.4325	NaN	1	0	Median	10069000	2990600	7078400	3485	288	3280	7215	16122;16123	16123		2	9606
VGPSSGDAPEPSSR	0	1	Unmodified	1341.6161	0.61607219	547	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	2	0		1				14.094	14.094	2	0.00090751	4235	DP1063-2	122.69	84.123			NaN	NaN	NaN	0	0	Median	5125000	0	5125000	3486	547	3281	7216	16124;16125	16125		2	9606
VGQAVDVVGQAGKPK	2	0	Unmodified	1451.8096	0.80962704	464	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	2	0		1				14.956	14.956	3	0.0027356	5332	DP1063-2	77.633	77.633			1.8889	1.8044	NaN	1	0	Median	15592000	5267200	10325000	3487	464	3282	7217	16126;16127;16128	16127		3	9606
VGSTSENITQK	1	0	Unmodified	1162.583	0.58298115	42	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			13.464	13.464	2	0.00086047	4882	DP1063-3	128.6	87.824			NaN	NaN	NaN	0	0	Median	4420500	4420500	0	3488	42	3283	7218	16129;16130	16129		2	9606
VGVEVPDVNIEGPEGK	1	0	Unmodified	1636.8308	0.83081599	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	0	1					19.7	19.7	2	0.0071455	9970	DP1063-1	98.368	38.113			NaN	NaN	NaN	0	0	Median	1728200	0	1728200	3489	455	3284	7219	16131;16132	16132		2	9606
VGVNGFGR	0	1	Unmodified	804.42424	0.42423608	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		16.037	16.037	2	0.014644	7976	DP1063-4	103.29	76.324			2.559	1.7929	NaN	1	0	Median	25302000	6962800	18339000	3490	102	3285	7220	16133;16134;16135;16136	16135		4	9606
VGWEQLLTTIAR	0	1	Unmodified	1385.7667	0.76669959	60	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	yes	no	0	0	0	2	0		1				24.275	24.275	2	1.0742E-05	17623	DP1063-2	169.41	133.97			2.4289	1.7563	NaN	1	0	Median	18327000	4322300	14005000	3491	60	3286	7221	16137;16138;16139;16140	16139		4	9606
VHAALVYHK	1	0	Unmodified	1036.5818	0.58179936	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		13.264	13.264	2	0.020957	4461	DP1063-4	90.986	74.21			NaN	NaN	NaN	0	0	Median	2431600	0	2431600	3492	458	3287	7222	16141;16142	16142		2	9606
VHELQGNAPSDPDAVSAEEALK	1	0	Unmodified	2276.0921	0.092069069	82	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	2	0		1				17.455	17.455	3	0.0070211	8675	DP1063-2	76.156	53.721			NaN	NaN	NaN	0	0	Median	11181000	0	11181000	3493	82	3288	7223	16143	16143		1	9606
VHGPGIQSGTTNKPNK	2	0	Unmodified	1633.8536	0.85361712	190	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	2					12.621	12.621	3;4	3.483E-09	1962	DP1063-1	181.67	181.67			11.015	11.07	3.0635	2	0	Median	10947000	802050	10145000	3494	190	3289	7224;7225	16144;16145;16146;16147	16145		4	9606
VHGPGIQSGTTNKPNKFTVETR	2	1	Unmodified	2367.2295	0.22950602	190	P21333	FLNA	Filamin-A	yes	yes	0	0	2	1	0	1					14.756	14.756	4	0.053432	4254	DP1063-1	42.529	25.383			NaN	NaN	NaN	0	0	Median	1354700	0	1354700	3495	190	3290	7226	16148	16148		1	9606
VHIEIGPDGR	0	1	Unmodified	1091.5724	0.57235688	237;327	P31943;P55795;P52597	HNRNPH1;HNRNPH2;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	4	0.816			1	1	1	15.923	15.923	2	0.00013013	7807	DP1063-4	128.12	128.12			1.5908	1.1236	11.933	3	0	Plateau	70128000	29857000	40270000	3496	237;327	3291	7227;7228;7229	16149;16150;16151;16152;16153;16154;16155;16156;16157;16158	16157		10	9606
VHIGQVIMSIR	0	1	Oxidation (M)	1267.7071	0.70707622	220	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	1	0	5	0					1	17.821	17.821	3	0.0044807	10521	DP1063-5	64.64	64.64			3.0753	2.2968	NaN	1	0	Median	70727000	18189000	52538000	3497	220	3292	7230	16159;16160;16161	16160	273	3	9606
VHKECCHGDLLECADDR	1	1	Unmodified	2112.8775	0.87754174	14	CON__P02769			yes	yes	0	0	1	1.8	0.748	2	2	1			14.455	14.455	2;3;4	7.3651E-06	6054	DP1063-3	191.89	141.68		+	NaN	NaN	NaN	0	0	Median	23544000	23544000	0	3498	14	3293	7231;7232;7233;7234;7235	16162;16163;16164;16165;16166;16167;16168;16169	16168		8	9606
VHKECCHGDLLECADDRADLAK	2	1	Unmodified	2611.1577	0.15773934	14	CON__P02769			yes	yes	0	0	2	2.14	0.833	2	2	3			15.548	15.548	3;4;5	4.4715E-15	7491	DP1063-3	211.13	197.81		+	NaN	NaN	NaN	0	0	Median	403390000	403390000	0	3499	14	3294	7236;7237;7238;7239;7240;7241;7242	16170;16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181	16180		12	9606
VHNEGLPAPIVR	0	1	Unmodified	1300.7252	0.72516913	9	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	2.5	0.5		2	2			16.3	16.3	2;3	5.2526E-06	8577	DP1063-3	160.53	102.1		+	NaN	NaN	NaN	0	0	Median	96008000	96008000	0	3500	9	3295	7243;7244;7245;7246	16182;16183;16184;16185;16186;16187;16188	16186		7	
VHPAEPFTGELPAQQTLPILGEK	1	0	Unmodified	2471.306	0.30602501	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.09	21.09	3	0.0034832	11664	DP1063-1	58.373	50.622			0.91019	0.7084	NaN	1	0	Median	5022700	2415200	2607400	3501	43	3296	7247	16189;16190;16191	16190		3	9606
VHSEAISPAPEEK	1	0	Unmodified	1392.6885	0.68850885	613	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	1	0	1					13.747	13.747	2	0.033073	3176	DP1063-1	79.23	48.433			NaN	NaN	NaN	0	0	Median	314620	0	314620	3502	613	3297	7248	16192	16192		1	9606
VHTVVASNNGSVFSVEVDGSK	1	0	Unmodified	2131.0546	0.054561351	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			2			18.107	18.107	2;3	4.2664E-201	11024	DP1063-3	379.24	342.3			1.3055	1.0483	18.668	2	0	Median	106500000	43250000	63252000	3503	110	3298	7249;7250	16193;16194;16195;16196;16197;16198	16195		6	9606
VIAINVDDPDAANYNDINDVKR	1	1	Unmodified	2443.1979	0.19793112	503	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	1	4	0				1		19.002	19.002	3	0.0007443	11917	DP1063-4	97.621	69.115			NaN	NaN	NaN	0	0	Median	5860200	0	5860200	3504	503	3299	7251	16199	16199		1	9606
VIDDTNITR	0	1	Unmodified	1045.5404	0.54038805	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	4	0				1		15.442	15.442	2	0.001289	7128	DP1063-4	139.97	94.889			NaN	NaN	NaN	0	0	Median	22819000	0	22819000	3505	118	3300	7252	16200	16200		1	9606
VIDPATATSVDLR	0	1	Unmodified	1356.7249	0.72489436	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	4	0				1		18.597	18.597	2	0.0092357	11240	DP1063-4	90.913	42.822			NaN	NaN	NaN	0	0	Median	2759700	0	2759700	3506	320	3301	7253	16201	16201		1	9606
VIECSYTSADGQR	0	1	Unmodified	1484.6566	0.6565568	642	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		15.304	15.304	2	0.00081287	6986	DP1063-4	129.16	99.23			1.5642	0.95868	NaN	1	0	Median	8875700	3645300	5230500	3507	642	3302	7254	16202;16203;16204;16205	16203		4	9606
VIEETEER	0	1	Unmodified	1003.4822	0.48220447	345	P58107	EPPK1	Epiplakin	yes	no	0	0	0	1	0	1					13.61	13.61	2	0.047207	2989	DP1063-1	93.195	54.389			NaN	NaN	NaN	0	0	Median	0	0	0	3508	345	3303	7255	16206	16206		1	9606
VIGIDHIK	1	0	Unmodified	893.53345	0.53345218	192	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	5	0					1	15.727	15.727	2	0.015914	7959	DP1063-5	100.74	49.776			1.3203	1.1176	NaN	1	0	Median	31479000	12585000	18894000	3509	192	3304	7256	16207	16207		1	9606
VIGLSSDLQQVGGASAR	0	1	Unmodified	1656.8795	0.87949752	38	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	4	0				1		19.115	19.115	2	3.167E-10	11999	DP1063-4	192.4	192.4			2.6434	1.7256	NaN	1	0	Median	14545000	4109600	10435000	3510	38	3305	7257	16208;16209	16208		2	9606
VIGNQSLVNELAFTAR	0	1	Unmodified	1730.9315	0.93153309	459	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		21.432	21.432	2	6.312100000000001E-41	15012	DP1063-4	243.85	243.85			1.7044	1.1454	NaN	1	0	Median	18256000	7052900	11203000	3511	459	3306	7258	16210;16211;16212;16213	16210		4	9606
VIGSGCNLDSAR	0	1	Unmodified	1247.5928	0.59283433	91;127	P00338;Q6ZMR3;P07864;P07195	LDHA;LDHAL6A;LDHC;LDHB	L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain	no	no	0	0	0	4	0				1		15.464	15.464	2	0.00048827	7170	DP1063-4	135.55	86.755			2.5961	2.1563	NaN	1	0	Median	95970000	26173000	69797000	3512	91;127	3307	7259	16214;16215;16216	16216		3	9606
VIHDNFGIVEGLMTTVHAITATQK	1	0	Oxidation (M)	2610.3476	0.34757225	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	4	0				2		22.267	22.267	3;4	5.4154E-16	16050	DP1063-4	183.1	183.1			2.3197	1.6056	6.2246	2	0	Median	58572000	18100000	40472000	3513	102	3308	7260;7261	16217;16218;16219;16220;16221;16222	16220	76	6	9606
VIHDNFGIVEGLMTTVHAITATQK	1	0	Unmodified	2594.3527	0.35265763	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				2		23.914	23.914	3;4	7.5255E-16	17995	DP1063-4	181.81	181.81			2.9373	2.0331	NaN	1	0	Median	8094800	1167700	6927100	3514	102	3308	7262;7263	16223;16224;16225;16226;16227;16228;16229	16225		7	9606
VIHLSNLPHSGYSDSAVLK	1	0	Unmodified	2036.0691	0.069089203	281	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		2				17.758	17.758	3;4	0.0012424	9047	DP1063-2	99.813	76.847			NaN	NaN	NaN	0	0	Median	34893000	0	34893000	3515	281	3309	7264;7265	16230;16231;16232;16233	16232		4	9606
VIISAPSADAPMFVMGVNHEK	1	0	2 Oxidation (M)	2244.0919	0.091874835	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	2	0	4	0				2		18.565	18.565	3	0.00013712	11250	DP1063-4	80.98	80.98			2.064	1.4286	NaN	1	0	Median	36554000	10057000	26497000	3516	102	3310	7266;7267	16234;16235;16236;16237	16235	77;78	4	9606
VIISAPSADAPMFVMGVNHEK	1	0	Oxidation (M)	2228.097	0.096960213	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	4	0				1		19.48	19.48	3	1.9211E-06	12445	DP1063-4	107.41	107.41			2.2784	1.577	NaN	1	0	Median	17184000	6384800	10800000	3517	102	3310	7268	16238;16239;16240;16241	16238	77;78	4	9606
VIITNFPAAK	1	0	Unmodified	1072.6281	0.62808085	298	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	2	0		1				18.312	18.312	2	0.045436	9811	DP1063-2	79.906	51.688			NaN	NaN	NaN	0	0	Median	0	0	0	3518	298	3311	7269	16242	16242		1	9606
VILDLTPNYR	0	1	Unmodified	1202.6659	0.66592292	134	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				19.841	19.841	2	0.016281	11919	DP1063-2	89.698	40.256			NaN	NaN	NaN	0	0	Median	8367200	8367200	0	3519	134	3312	7270	16243;16244	16244		2	9606
VILHLKEDQTEYLEER	1	1	Unmodified	2014.0371	0.037120373	135;132	P08238;Q58FF7;Q58FF6;P07900	HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha	no	no	0	0	1	2.5	0.866		3		1		17.696	17.696	2;3;4	1.3364E-42	8954	DP1063-2	256.13	256.13			2.4381	2.2968	15.953	3	0	Median	259760000	58424000	201340000	3520	135;132	3313	7271;7272;7273;7274	16245;16246;16247;16248;16249;16250;16251;16252;16253;16254;16255;16256	16249		12	9606
VINEPTAAALAYGLDK	1	0	Unmodified	1644.8723	0.87228688	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			20.489	20.489	2	0.0011975	14338	DP1063-3	150.49	127.31			1.543	1.2391	NaN	1	0	Median	35604000	13755000	21848000	3521	263	3314	7275	16257;16258;16259;16260	16259		4	9606
VINEPTAAALAYGLDKSEDK	2	0	Unmodified	2104.0688	0.068814432	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	3	0			1			19.56	19.56	3	0.018963	13062	DP1063-3	75.589	50.08			NaN	NaN	NaN	0	0	Median	6631800	0	6631800	3522	263	3315	7276	16261	16261		1	9606
VINQILTEMDGMSTK	1	0	2 Oxidation (M)	1710.8168	0.81682219	337	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	2	0	2	0		3				17.49	17.49	2	0.00062105	8748	DP1063-2	124.39	80.873			NaN	NaN	NaN	0	0	Median	0	0	0	3523	337	3316	7277;7278;7279	16262;16263;16264	16264	430;431	3	9606
VIQCFAETGQVQK	1	0	Unmodified	1506.7501	0.75006325	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					16.826	16.826	2	0.00087499	6485	DP1063-1	112.3	112.3			1.8556	1.4647	NaN	1	0	Median	8790000	3311100	5478900	3524	428	3317	7280	16265;16266	16265		2	9606
VIQVENSHIILTGASALNK	1	0	Unmodified	2006.116	0.1160394	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	3					19.013	19.013	2	0.00030347	9127	DP1063-1	128.74	96.122			NaN	NaN	NaN	0	0	Median	1616500	0	1616500	3525	43	3318	7281;7282;7283	16267;16268;16269	16267		3	9606
VITEEEKNFK	2	0	Unmodified	1235.6398	0.63976774	214	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	5	0					2	14.543	14.543	2;3	1.7558E-05	6556	DP1063-5	112.11	88.963			1.9166	1.8727	1.5255	2	0	Median	28464000	11058000	17406000	3526	214	3319	7284;7285	16270;16271;16272;16273;16274	16273		5	9606
VITEYLNAQESAK	1	0	Unmodified	1464.746	0.74602373	541	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	2	0		1				17.823	17.823	2	0.0018004	9149	DP1063-2	113.22	60.135			NaN	NaN	NaN	0	0	Median	7373600	0	7373600	3527	541	3320	7286	16275	16275		1	9606
VITIMQNPR	0	1	Oxidation (M)	1086.5856	0.5855641	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	1	0	5	0					1	15.314	15.314	2	0.0017358	7448	DP1063-5	113.89	86.065			1.6507	1.2328	NaN	1	0	Median	110120000	44504000	65614000	3528	374	3321	7287	16276;16277;16278;16279	16279	468	4	9606
VIYHLDEEETPYLVK	1	0	Unmodified	1846.9353	0.93528106	46	O14641	DVL2	Segment polarity protein dishevelled homolog DVL-2	yes	yes	0	0	0	2	0		1				19.195	19.195	3	0.001179	11061	DP1063-2	102.9	73.18			NaN	NaN	NaN	0	0	Median	9419200	0	9419200	3529	46	3322	7288	16280;16281	16281		2	9606
VKADRDESSPYAAMLAAQDVAQR	1	2	Oxidation (M)	2507.2074	0.20744995	372	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	2	5	0					1	16.824	16.824	3	0.00057954	9192	DP1063-5	96.591	74.216			NaN	NaN	NaN	0	0	Median	8911400	0	8911400	3530	372	3323	7289	16282;16283;16284	16284	467	3	9606
VKDWVER	1	1	Unmodified	930.49232	0.49231565	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.67	14.67	2	0.0073248	4133	DP1063-1	126.28	73.641			1.3033	1.2152	NaN	1	0	Median	153020000	65845000	87171000	3531	460	3324	7290	16285;16286;16287;16288	16287		4	9606
VKEGVEVTDHR	1	1	Unmodified	1267.6521	0.65206377	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					12.821	12.821	3	6.0977E-06	2121	DP1063-1	139.31	113.87			1.1868	1.1065	NaN	1	0	Median	4120300	1552100	2568300	3532	43	3325	7291	16289;16290;16291	16289		3	9606
VKELQAEQEDR	1	1	Unmodified	1343.6681	0.66810776	427	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	2	0		1				13.281	13.281	3	0.033287	3238	DP1063-2	68.515	41.889			NaN	NaN	NaN	0	0	Median	2663700	0	2663700	3533	427	3326	7292	16292	16292		1	9606
VKGGGHVAQIYAIR	1	1	Unmodified	1467.831	0.83103118	370	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					1	15.115	15.115	3	0.003078	7320	DP1063-5	85.536	64.29			1.8129	1.5456	NaN	1	0	Median	14412000	6297000	8115500	3534	370	3327	7293	16293;16294	16294		2	9606
VKLEAEIATYR	1	1	Unmodified	1291.7136	0.71360139	118	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	1	4	0				1		17.327	17.327	2	0.019177	9592	DP1063-4	126.39	50.288			NaN	NaN	NaN	0	0	Median	7286900	0	7286900	3535	118	3328	7294	16295	16295		1	9606
VKPLQDQNELFGK	2	0	Unmodified	1514.8093	0.80929269	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			3			17.191	17.191	2;3	0.00036877	9788	DP1063-3	132.5	100.07			1.1555	1.0367	13.577	2	0	Median	58659000	24213000	34446000	3536	456	3329	7295;7296;7297	16296;16297;16298;16299;16300;16301;16302;16303	16300		8	9606
VKVETYNDESR	1	1	Unmodified	1338.6416	0.64155866	221	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	1	3	0			1			13.78	13.78	2	0.025987	5237	DP1063-3	123.86	75.97			NaN	NaN	NaN	0	0	Median	1727300	0	1727300	3537	221	3330	7298	16304	16304		1	9606
VKYETELAMR	1	1	Oxidation (M)	1254.6278	0.62782285	118	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	1	1	4	0				2		15.013	15.013	2;3	0.0060109	6572	DP1063-4	67.563	33.176			2.7722	2.6953	0.69194	2	0	Median	23390000	6538900	16851000	3538	118	3331	7299;7300	16305;16306;16307	16305	104	3	9606
VLADPSDDTK	1	0	Unmodified	1059.5084	0.50841922	345	P58107;Q15149	EPPK1;PLEC	Epiplakin;Plectin	yes	no	0	0	0	1	0	1					14.463	14.463	2	0.0082831	3898	DP1063-1	88.177	47.399			1.5376	1.1947	NaN	1	0	Median	5107000	2540900	2566100	3539	345	3332	7301	16308;16309	16308		2	9606
VLAESLGPLR	0	1	Unmodified	1053.6182	0.61824444	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.55	0.988		8	1	1	1	21.742	21.742	2	0.0016509	11329	DP1063-4	119.41	52.977			NaN	NaN	NaN	0	0	Median	670570000	0	670570000	3540	524	3333	7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312	16310;16311;16312;16313;16314;16315;16316;16317;16318;16319;16320;16321;16322;16323;16324;16325	16323		16	9606
VLAESLGPLRENPFMLLEAER	0	2	Oxidation (M)	2399.2519	0.25188095	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	1	4	0				1		22.868	22.868	3	0.0022294	16743	DP1063-4	87.411	54.338			NaN	NaN	NaN	0	0	Median	4874400	0	4874400	3541	524	3334	7313	16326;16327	16327	662	2	9606
VLALSVETDYTFPLAEK	1	0	Unmodified	1894.9928	0.99279594	115	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				1		22.747	22.747	2	0.0010527	16622	DP1063-4	141.37	109.38			1.4004	0.96933	NaN	1	0	Median	8306800	3658000	4648800	3542	115	3335	7314	16328;16329;16330;16331	16329		4	9606
VLANPGNSQVAR	0	1	Unmodified	1224.6575	0.65748349	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				14.62	14.62	2	0.001601	4862	DP1063-2	108.43	69.864			2.8593	2.101	NaN	1	0	Median	25951000	6246600	19704000	3543	495	3336	7315	16332;16333	16332		2	9606
VLATAFDTTLGGR	0	1	Unmodified	1320.7038	0.70376498	247	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	2	0		1				19.72	19.72	2	0.00085397	11738	DP1063-2	139.43	81			2.4081	1.7516	NaN	1	0	Median	22858000	6591000	16267000	3544	247	3337	7316	16334;16335;16336	16334		3	9606
VLATVTKPVGGDK	2	0	Unmodified	1283.7449	0.74490152	439	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				2		14.434	14.434	2;3	0.00078961	5871	DP1063-4	108.9	69.055			1.4638	1.5202	5.1435	2	0	Median	15509000	5360300	10149000	3545	439	3338	7317;7318	16337;16338;16339;16340;16341;16342	16341		6	9606
VLDELTLAR	0	1	Unmodified	1028.5866	0.58660996	12;17;16	CON__P02533;P02533;CON__Q9QWL7;CON__Q6IFX2;CON__Q04695;CON__A2A4G1;Q04695;CON__P19001;CON__P19012;P19012;CON__P08779;P08779;CON__P08727;P08727	KRT14;KRT17;KRT15;KRT16;KRT19	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 19	no	no	0	0	0	3.5	0.5			1	1		19.09	19.09	2	6.5054E-17	11976	DP1063-4	206.5	122.88		+	0.2132	0.14302	NaN	1	0	Median	26951000	23764000	3186700	3546	12;17;16	3339	7319;7320	16343;16344;16345	16345		3	9606
VLDELTLTK	1	0	Unmodified	1030.591	0.59102664	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.63	1		1		1	18.728	18.728	2	0.00083628	8813	DP1063-1	124.98	56.196		+	NaN	NaN	NaN	0	0	Median	118080000	118080000	0	3547	19	3340	7321;7322;7323	16346;16347;16348;16349;16350;16351	16347		6	9606
VLDLVEVLVTK	1	0	Unmodified	1226.7486	0.74858991	606	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		2				23.508	23.508	2	0.0041589	16654	DP1063-2	109.42	77.485			NaN	NaN	NaN	0	0	Median	0	0	0	3548	606	3341	7324;7325	16352;16353	16352		2	9606
VLDNYLTSPLPEEVDETSAEDEGVSQR	0	1	Unmodified	2991.3833	0.38328487	37	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	4	0				1		21.524	21.524	3	6.4181E-05	15166	DP1063-4	99.148	76.393			NaN	NaN	NaN	0	0	Median	3995500	0	3995500	3549	37	3342	7326	16354;16355;16356	16355		3	9606
VLDPNTVFALVNYISFK	1	0	Unmodified	1939.0455	0.045500215	21	CON__P34955			yes	yes	0	0	0	3	0			1			27.154	27.154	2	0.011747	22408	DP1063-3	94.551	58.248		+	NaN	NaN	NaN	0	0	Median	3022100	3022100	0	3550	21	3343	7327	16357	16357		1	
VLEALLPLK	1	0	Unmodified	994.64267	0.64266828	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				21.164	21.164	2	0.0040011	11776	DP1063-1	111.01	80.395			2.1338	1.6937	NaN	1	0	Median	14709000	3414200	11295000	3551	303	3344	7328;7329	16358;16359;16360	16358		3	9606
VLEGNEQFINAAK	1	0	Unmodified	1431.7358	0.73579339	248	P35030	PRSS3	Trypsin-3	yes	yes	0	0	0	3.5	1.12		1	1	1	1	17.823	17.823	2	1.4473E-11	10456	DP1063-5	201.33	127.49			NaN	NaN	NaN	0	0	Median	86436000	86436000	0	3552	248	3345	7330;7331;7332;7333	16361;16362;16363;16364;16365;16366;16367;16368	16367		8	9606
VLENAEGAR	0	1	Unmodified	957.48796	0.48795855	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			13.608	13.608	2	1.4378E-07	4987	DP1063-3	147.52	96.173			1.5865	1.2097	17.686	2	0	Median	87342000	33660000	53682000	3553	263	3346	7334;7335	16369;16370;16371;16372;16373;16374	16373		6	9606
VLEQLTGQTPVFSK	1	0	Unmodified	1545.8403	0.84025847	399	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	19.546	19.546	2	5.6483E-09	12730	DP1063-5	190.36	156.27			2.2271	1.8852	NaN	1	0	Median	45331000	15828000	29504000	3554	399	3347	7336	16375;16376;16377;16378	16375		4	9606
VLETAEDIQER	0	1	Unmodified	1301.6463	0.64630969	479	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	0	1					16.383	16.383	2	0.00059681	6094	DP1063-1	121.5	121.5			1.6308	1.3763	NaN	1	0	Median	2592700	964840	1627800	3555	479	3348	7337	16379;16380	16379		2	9606
VLGIQVDTDGSGR	0	1	Unmodified	1315.6732	0.67319314	245	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	2	0		1				18.397	18.397	2	0.019441	9933	DP1063-2	83	25.141			NaN	NaN	NaN	0	0	Median	0	0	0	3556	245	3349	7338	16381	16381		1	9606
VLGTAFDPFLGGK	1	0	Unmodified	1320.7078	0.70778773	566	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	2	0		1				22.246	22.246	2	0.05611	15102	DP1063-2	72.096	41.778			NaN	NaN	NaN	0	0	Median	6156900	0	6156900	3557	566	3350	7339	16382	16382		1	9606
VLGTPVETIELTEDRR	0	2	Unmodified	1826.9738	0.97379183	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	1	0	1					19.129	19.129	3	0.019175	9300	DP1063-1	48.112	48.112			1.914	1.7593	NaN	1	0	Median	9149000	3545700	5603300	3558	222	3351	7340	16383	16383		1	9606
VLGTSPEAIDSAENR	0	1	Unmodified	1557.7635	0.76346471	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					17.117	17.117	2	0.00075757	6826	DP1063-1	156.01	156.01			1.8574	1.4492	NaN	1	0	Median	9579000	3026700	6552300	3559	222	3352	7341	16384;16385;16386;16387;16388;16389	16387		6	9606
VLHEAEGHIVTCETNTGEVYR	0	1	Unmodified	2413.1332	0.13322238	380	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					2	16.065	16.065	3;4	1.2167E-35	8394	DP1063-5	230.48	230.48			2.301	1.7185	35.025	2	0	Median	31067000	10407000	20661000	3560	380	3353	7342;7343	16390;16391;16392;16393	16393		4	9606
VLIANNGIAAVK	1	0	Unmodified	1181.7132	0.71320746	460;43	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1.67	1.25	11	1	1	1	1	17.732	17.732	2	0.00018255	10061	DP1063-4	155.07	120.81			1.3334	1.1057	14.141	5	0	Median	579410000	252060000	327360000	3561	43;460	3354	7344;7345;7346;7347;7348;7349;7350;7351;7352;7353;7354;7355;7356;7357;7358	16394;16395;16396;16397;16398;16399;16400;16401;16402;16403;16404;16405;16406;16407;16408;16409;16410;16411;16412;16413;16414;16415;16416;16417;16418;16419;16420	16413		27	9606
VLITTDLLAR	0	1	Unmodified	1113.6758	0.67575932	350	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	no	0	0	0	4	0				1		20.581	20.581	2	0.00042435	13960	DP1063-4	122.52	106.31			2.4211	1.8118	NaN	1	0	Median	42387000	12343000	30044000	3562	350	3355	7359	16421;16422;16423;16424	16423		4	9606
VLKDLPR	1	1	Unmodified	839.52289	0.52288749	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				14.397	14.397	2	0.026038	4604	DP1063-2	97.473	54.407			1.2938	1.2188	NaN	1	0	Median	58226000	25409000	32817000	3563	154	3356	7360	16425;16426	16426		2	9606
VLKQVHPDTGISSK	2	0	Unmodified	1507.8358	0.83584179	66;126	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q96A08;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	1	5	0					1	13.684	13.684	3	0.0064293	5496	DP1063-5	73.386	53.544			1.5736	1.5376	NaN	1	0	Median	6439200	2553400	3885800	3564	66;126	3357	7361	16427;16428	16427		2	9606
VLLGETGKEK	2	0	Unmodified	1072.6128	0.61282471	376	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	13.827	13.827	2	0.0038158	5637	DP1063-5	96.034	44.179			3.0994	3.0284	NaN	1	0	Median	30709000	6890500	23818000	3565	376	3358	7362	16429;16430	16429		2	9606
VLLGSVSGLAGGFVGTPADLVNVR	0	1	Unmodified	2297.2743	0.27433095	643	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	4	0				2		23.867	23.867	2;3	9.4433E-06	17941	DP1063-4	130.02	103.89			NaN	NaN	NaN	0	0	Median	1827000	0	1827000	3566	643	3359	7363;7364	16431;16432	16431		2	9606
VLLPEYGGTK	1	0	Unmodified	1075.5914	0.59136099	360	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	5	0					1	17.866	17.866	2	0.010297	10575	DP1063-5	83.998	29.449			1.8125	1.5343	NaN	1	0	Median	9522200	3201800	6320400	3567	360	3360	7365	16433;16434	16433		2	9606
VLLQASQDENFGNTTPR	0	1	Unmodified	1888.9279	0.92790427	344	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	2	0		1				18.316	18.316	2	0.0022412	9818	DP1063-2	132.79	99.03			NaN	NaN	NaN	0	0	Median	0	0	0	3568	344	3361	7366	16435	16435		1	9606
VLLSPSIPSVGQDQTLSPGSK	1	0	Unmodified	2109.1317	0.13174904	475	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	2	0		1				20.365	20.365	2	4.5917E-21	12621	DP1063-2	218.21	170.1			NaN	NaN	NaN	0	0	Median	11350000	0	11350000	3569	475	3362	7367	16436;16437	16437		2	9606
VLNNMEIGTSLFDEEGAK	1	0	Oxidation (M)	1981.9303	0.93027204	95	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	1	0	4	0				1		20.245	20.245	2	0.00084791	13552	DP1063-4	134.04	64.228			NaN	NaN	NaN	0	0	Median	4805200	0	4805200	3570	95	3363	7368	16438;16439	16439	68	2	9606
VLNTNIDGR	0	1	Unmodified	1000.5302	0.53015772	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	15.486	15.486	2	5.3519E-05	7633	DP1063-5	140.09	95.74			1.9819	1.4802	NaN	1	0	Median	94673000	30296000	64376000	3571	374	3364	7369	16440;16441;16442;16443	16443		4	9606
VLPGVDALSNI	0	0	Unmodified	1096.6128	0.61282471	95	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	4	0				1		23.272	23.272	2	0.048689	17175	DP1063-4	73.248	21.902			NaN	NaN	NaN	0	0	Median	0	0	0	3572	95	3365	7370	16444	16444		1	9606
VLPSITTEILK	1	0	Unmodified	1212.7329	0.73293985	249	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		20.778	20.778	2	0.0027975	14217	DP1063-4	101.66	68.772			1.6557	1.1461	NaN	1	0	Median	10419000	3302100	7116400	3573	249	3366	7371	16445;16446;16447	16446		3	9606
VLPSIVNEVLK	1	0	Unmodified	1209.7333	0.7332742	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		21.608	21.608	2	0.0016854	15293	DP1063-4	109.83	83.766			1.3712	0.94909	NaN	1	0	Median	10194000	4507300	5687000	3574	598	3367	7372	16448;16449	16449		2	9606
VLQAELK	1	0	Unmodified	799.48035	0.48035398	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.384	15.384	2	0.035592	4934	DP1063-1	97.071	10.985			NaN	NaN	NaN	0	0	Median	289460000	0	289460000	3575	460	3368	7373	16450;16451	16450		2	9606
VLQALEGLK	1	0	Unmodified	969.58588	0.58588168	265	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	18.712	18.712	2	0.0076602	11726	DP1063-5	98.458	59.666			1.6097	1.3626	NaN	1	0	Median	11495000	4287700	7207100	3576	265	3369	7374	16452;16453	16452		2	9606
VLQDLVMDILR	0	1	Oxidation (M)	1329.7326	0.73262227	331	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	2	0		1				23.646	23.646	2	0.0046809	16801	DP1063-2	112.75	66.59			NaN	NaN	NaN	0	0	Median	4448500	0	4448500	3577	331	3370	7375	16454;16455;16456	16454	426	3	9606
VLQGDLVMNVYR	0	1	Oxidation (M)	1421.7337	0.7336849	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	1	0	1					18.862	18.862	2	0.00078817	8954	DP1063-1	109.79	73.846			2.7479	2.231	NaN	1	0	Median	16899000	4715100	12184000	3578	303	3371	7376	16457;16458	16458	365	2	9606
VLQSALAAIR	0	1	Unmodified	1040.6342	0.63422886	457	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		18.52	18.52	2	0.0031717	11172	DP1063-4	109.11	54.334			NaN	NaN	NaN	0	0	Median	7435200	0	7435200	3579	457	3372	7377	16459;16460	16459		2	9606
VLQSFTVDSSK	1	0	Unmodified	1209.6241	0.62411768	70	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	0	1					17.314	17.314	2	0.0086976	7029	DP1063-1	93.058	49.975			NaN	NaN	NaN	0	0	Median	1836000	0	1836000	3580	70	3373	7378	16461;16462	16462		2	9606
VLSAPPHFHFGQTNR	0	1	Unmodified	1706.8641	0.86412223	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3.75	0.433			1	3		16.903	16.903	2;3	0.00050052	9018	DP1063-4	92.151	72.573			1.6539	1.1647	1.3026	2	0	Median	41298000	15648000	25650000	3581	218	3374	7379;7380;7381;7382	16463;16464;16465;16466;16467	16465		5	9606
VLSGTIHAGQPVK	1	0	Unmodified	1305.7405	0.74048484	499	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				14.787	14.787	3	0.0072386	5083	DP1063-2	62.528	62.528			1.9992	1.6725	NaN	1	0	Median	8375200	2548300	5826900	3582	499	3375	7383	16468;16469;16470	16469		3	9606
VLSIGDGIAR	0	1	Unmodified	999.57129	0.57129425	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.183	18.183	2	1.363E-05	11171	DP1063-3	138.54	69.63			1.4995	1.2123	NaN	1	0	Median	86892000	33629000	53264000	3583	207	3376	7384	16471;16472;16473;16474	16473		4	9606
VLSINGVDVTEAR	0	1	Unmodified	1371.7358	0.73579339	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	2	0		1				19.155	19.155	2	0.0080099	10952	DP1063-2	92.943	54.857			NaN	NaN	NaN	0	0	Median	4246000	0	4246000	3584	484	3377	7385	16475	16475		1	9606
VLSRPNAQELPSMYQR	0	2	Oxidation (M)	1903.9574	0.95743026	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	1	4	0				2		16.285	16.285	2;3	0.0010594	8300	DP1063-4	71.545	71.545			1.3197	1.1833	4.4816	2	0	Median	24975000	10513000	14462000	3585	598	3378	7386;7387	16476;16477;16478	16477	727	3	9606
VLSRPNAQELPSMYQR	0	2	Unmodified	1887.9625	0.96251564	598	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	1	4	0				1		17.425	17.425	3	0.0015349	9742	DP1063-4	78.244	78.244			1.526	1.3683	NaN	1	0	Median	8416500	3071700	5344800	3586	598	3378	7388	16479;16480;16481;16482	16482		4	9606
VLSSIEQK	1	0	Unmodified	902.5073	0.50729701	239	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	5	0					1	14.264	14.264	2	0.0075938	6170	DP1063-5	117.16	0			3.4029	2.8806	NaN	1	0	Median	34197000	8498900	25698000	3587	239	3379	7389	16483;16484	16483		2	9606
VLTPELYAELR	0	1	Unmodified	1302.7184	0.71835242	162	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		20.562	20.562	2	0.00031675	13886	DP1063-4	125.71	82.062			1.6941	1.2622	NaN	1	0	Median	40953000	15976000	24977000	3588	162	3380	7390	16485;16486;16487;16488;16489;16490	16485		6	9606
VLTQPSSVSGSLGQR	0	1	Unmodified	1514.8053	0.80526994	7	CON__ENSEMBL:ENSBTAP00000014147			yes	yes	0	0	0	5	0					1	16.757	16.757	2	0.00051039	9119	DP1063-5	160.18	84.119		+	NaN	NaN	NaN	0	0	Median	8917200	8917200	0	3589	7	3381	7391	16491;16492	16491		2	
VLTSSSRLHMMVR	0	2	Oxidation (M)	1531.7963	0.79630194	619	Q9H5P4	PDZD7	PDZ domain-containing protein 7	yes	yes	0	1	1	4	0				1		16.55	16.55	2	0.015332	8576	DP1063-4	87.806	20.6			NaN	NaN	NaN	0	0	Median	0	0	0	3590	619	3382	7392	16493	16493	743	1	9606
VLTVINQTQK	1	0	Unmodified	1142.6659	0.66592292	280	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	5	0					1	16.086	16.086	2	8.2104E-15	8364	DP1063-5	206.43	174.56			1.6122	1.3647	NaN	1	0	Median	38720000	14969000	23750000	3591	280	3383	7393	16494;16495;16496	16495		3	9606
VLVEGPLNNLR	0	1	Unmodified	1222.7034	0.70337105	569	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	2	0		1				19.465	19.465	2	0.03827	11400	DP1063-2	76.827	36.768			NaN	NaN	NaN	0	0	Median	7053800	0	7053800	3592	569	3384	7394	16497;16498	16497		2	9606
VLVQNAAGSQEK	1	0	Unmodified	1242.6568	0.65681479	673	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	0	1					14.148	14.148	2	2.5237E-05	3566	DP1063-1	142.43	86.711			NaN	NaN	NaN	0	0	Median	1476100	0	1476100	3593	673	3385	7395	16499;16500	16500		2	9606
VLYDAEISQIHQSVTDTNVILSMDNSR	0	1	Oxidation (M)	3063.4819	0.48189348	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	2.67	1.25	1		1	1		21.411	21.411	3	3.3279E-05	12072	DP1063-1	107.03	81.111		+	NaN	NaN	NaN	0	0	Median	59554000	59554000	0	3594	22	3386	7396;7397;7398	16501;16502;16503;16504;16505;16506	16501	25	6	9606
VLYSNMLGEENTYLWR	0	1	Oxidation (M)	2002.9459	0.94586252	426	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	4	0				1		21.263	21.263	2	0.00056916	14847	DP1063-4	129.34	94.225			NaN	NaN	NaN	0	0	Median	4781600	4781600	0	3595	426	3387	7399	16507;16508	16508	541	2	9606
VLYSNMLGEENTYLWR	0	1	Unmodified	1986.9509	0.9509479	426	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	4	0				1		22.621	22.621	2	0.0032718	16460	DP1063-4	107.97	79.202			NaN	NaN	NaN	0	0	Median	0	0	0	3596	426	3387	7400	16509	16509		1	9606
VMEKPSPLLVGR	1	1	Oxidation (M)	1340.7486	0.74860669	467	Q13283;Q9UN86	G3BP1;G3BP2	Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2	yes	no	0	1	1	3	0			1			15.919	15.919	3	0.0077436	8149	DP1063-3	60.49	26.614			1.8282	1.6582	NaN	1	0	Median	12104000	3719700	8384000	3597	467	3388	7401	16510;16511	16511	611	2	9606
VMIPVPAGVEDGQTVR	0	1	Oxidation (M)	1682.8662	0.86615564	580	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	1	0	4	0				1		19.061	19.061	2	0.023762	11950	DP1063-4	91.313	67.559			NaN	NaN	NaN	0	0	Median	0	0	0	3598	580	3389	7402	16512	16512	698	1	9606
VMLGETNPADSKPGTIR	1	1	Oxidation (M)	1800.904	0.90399771	171;196	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	1	1	5	0					2	15.811	15.811	2;3	1.1411E-09	8044	DP1063-5	179.67	147.91			2.1366	1.8215	6.8656	2	0	Median	77372000	23970000	53402000	3599	196;171	3390	7403;7404	16513;16514;16515;16516;16517;16518;16519	16515	217	7	9606
VMLTTAGGTK	1	0	Oxidation (M)	993.51648	0.51648149	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	1	0	2	0		1				14.178	14.178	2	0.00036594	4347	DP1063-2	117.89	117.89			17.697	14.805	NaN	1	0	Median	22918000	1347500	21571000	3600	654	3391	7405	16520;16521	16521	767	2	9606
VMLYPSRI	0	1	Oxidation (M)	993.53174	0.53173762	180	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	1	1	5	0					1	18.225	18.225	2	0.04215	11016	DP1063-5	67.981	46.434			1.6752	1.2511	NaN	1	0	Median	17431000	4957800	12473000	3601	180	3392	7406	16522;16523	16522	229	2	9606
VMPNAIVQSVGVSSGK	1	0	Oxidation (M)	1587.829	0.82904185	89	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	1	0	3	0			1			17.845	17.845	2	0.0010232	10713	DP1063-3	123.28	82.659			NaN	NaN	NaN	0	0	Median	5192000	0	5192000	3602	89	3393	7407	16524;16525	16524	65	2	9606
VMQQQQQTTQQQLPQK	1	0	Oxidation (M)	1956.9687	0.96872323	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2.5	0.5		1	1			13.984	13.984	2;3	4.2873000000000003E-41	5438	DP1063-3	240.85	207.62			1.142	0.93601	3.8577	2	0	Median	25707000	11632000	14076000	3603	513	3394	7408;7409	16526;16527;16528;16529;16530;16531;16532;16533	16530	656	8	9606
VMQQQQQTTQQQLPQK	1	0	Unmodified	1940.9738	0.97380861	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				14.633	14.633	2	4.4125999999999994E-21	4897	DP1063-2	210.44	189.44			1.0316	0.86305	NaN	1	0	Median	9398900	5147200	4251700	3604	513	3394	7410	16534;16535;16536;16537	16534		4	9606
VNAELQAR	0	1	Unmodified	899.48248	0.48247924	89	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	3	0			1			14.062	14.062	2	0.051331	5586	DP1063-3	94.662	38.116			NaN	NaN	NaN	0	0	Median	0	0	0	3605	89	3395	7411	16538	16538		1	9606
VNDTIQIDLETGK	1	0	Unmodified	1444.7409	0.74093835	383	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		19.098	19.098	2	1.4652E-05	12003	DP1063-4	150.46	81.899			NaN	NaN	NaN	0	0	Median	0	0	0	3606	383	3396	7412	16539	16539		1	9606
VNEISVEVDSDPR	0	1	Unmodified	1457.6998	0.69980182	222	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					17.512	17.512	2	0.0054622	7286	DP1063-1	97.163	37.813			NaN	NaN	NaN	0	0	Median	2259400	0	2259400	3607	222	3397	7413	16540;16541	16540		2	9606
VNFTVDQIR	0	1	Acetyl (Protein N-term)	1132.5877	0.58767259	165	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	2	0		1				20.341	20.341	2	0.029736	12641	DP1063-2	73.665	18.942			NaN	NaN	NaN	0	0	Median	5410800	0	5410800	3608	165	3398	7414	16542	16542		1	9606
VNHWLTCSR	0	1	Unmodified	1171.5557	0.55566096	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				15.47	15.47	2	0.033981	5998	DP1063-2	84.213	39.131			NaN	NaN	NaN	0	0	Median	6377400	0	6377400	3609	654	3399	7415	16543	16543		1	9606
VNNADDFPNLFR	0	1	Unmodified	1420.6735	0.67352749	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				21.241	21.241	2	1.2189E-38	11814	DP1063-1	254.57	225.84			1.2415	1.0405	4.0372	2	0	Median	173350000	80519000	92829000	3610	460	3400	7416;7417;7418	16544;16545;16546;16547;16548;16549;16550	16545		7	9606
VNNSSLIGVGYTQTLRPGVK	1	1	Unmodified	2102.1484	0.14840216	283	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	1	4	0				1		18.503	18.503	3	0.00032174	11162	DP1063-4	114.96	97.387			NaN	NaN	NaN	0	0	Median	8827400	0	8827400	3611	283	3401	7419	16551;16552	16552		2	9606
VNPTVFFDIAVDGEPLGR	0	1	Unmodified	1944.9945	0.99452728	401	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	5	0					1	24.383	24.383	2	0.00029141	18542	DP1063-5	85.163	64.21			0.93242	0.69638	NaN	1	0	Median	2796000	1461100	1335000	3612	401	3402	7420	16553	16553		1	9606
VNQAIWLLCTGAR	0	1	Unmodified	1500.7871	0.78711746	292	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	21.393	21.393	2	0.00073551	15111	DP1063-5	147.91	147.91			1.9537	1.4591	NaN	1	0	Median	10921000	3788000	7133300	3613	292	3403	7421	16554;16555	16555		2	9606
VNQIGSVTESLQACK	1	0	Unmodified	1632.8141	0.81412007	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		18.122	18.122	2	1.3878E-20	10621	DP1063-4	216.84	0			2.7583	1.9092	NaN	1	0	Median	39287000	9637700	29650000	3614	123	3404	7422	16556;16557;16558;16559;16560	16558		5	9606
VPAEGLEEVLTTPETVLTGHTEK	1	0	Unmodified	2449.2588	0.25880005	343	P57737	CORO7	Coronin-7	yes	yes	0	0	0	2	0		1				22.398	22.398	3	0.027939	15240	DP1063-2	59.996	31.794			NaN	NaN	NaN	0	0	Median	5297000	0	5297000	3615	343	3405	7423	16561;16562	16562		2	9606
VPAINVNDSVTK	1	0	Unmodified	1255.6772	0.67721588	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	4	0				1		16.865	16.865	2	0.00040983	8936	DP1063-4	145.46	87.672			2.4653	1.7064	NaN	1	0	Median	18850000	4889800	13960000	3616	201	3406	7424	16563;16564;16565	16563		3	9606
VPEEDLKR	1	1	Unmodified	984.52401	0.52400971	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	3	0			1			13.329	13.329	2	0.0056982	4708	DP1063-3	87.754	68.972			1.8677	1.694	NaN	1	0	Median	5683100	1842300	3840800	3617	601	3407	7425	16566	16566		1	9606
VPEIEVTVEGPNNNNPQTSAVR	0	1	Unmodified	2363.1717	0.17171637	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				18.738	18.738	2	4.3021E-79	10390	DP1063-2	284.68	257.1			0.71732	0.53556	NaN	1	0	Median	31675000	19307000	12368000	3618	418	3408	7426	16567;16568;16569;16570	16568		4	9606
VPEVPTAPATDAAPK	1	0	Unmodified	1462.7668	0.76675917	645	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	3	0			1			16.828	16.828	2	0.003619	9273	DP1063-3	103.43	40.113			NaN	NaN	NaN	0	0	Median	10423000	0	10423000	3619	645	3409	7427	16571;16572	16572		2	9606
VPLKVEQANNAR	1	1	Unmodified	1337.7415	0.74154747	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2.33	0.471		2	1			14.006	14.006	2;3	1.12E-05	4152	DP1063-2	143.24	115.03			NaN	NaN	NaN	0	0	Median	36046000	0	36046000	3620	654	3410	7428;7429;7430	16573;16574;16575;16576;16577;16578	16576		6	9606
VPPPPPIAR	0	1	Unmodified	942.56509	0.56508666	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		15.674	15.674	2	0.032122	7397	DP1063-4	72.138	44.032			0.79397	0.56559	NaN	1	0	Median	28820000	15271000	13549000	3621	133	3411	7431	16579;16580	16579		2	9606
VPQIEVETHK	1	0	Unmodified	1178.6295	0.62953741	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					15.225	15.225	2	0.013165	4803	DP1063-1	80.455	80.455			1.6585	1.3807	NaN	1	0	Median	2600900	787420	1813500	3622	487	3412	7432	16581	16581		1	9606
VPQVSTPTLVEVSR	0	1	Unmodified	1510.8355	0.83550744	14	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	3	1.29	1	1	2	1	1	18.894	18.894	2;3	0.00021372	10549	DP1063-2	139.76	102.2		+	NaN	NaN	NaN	0	0	Median	83215000	83215000	0	3623	14	3413	7433;7434;7435;7436;7437;7438	16582;16583;16584;16585;16586;16587;16588;16589;16590;16591;16592	16584		11	9606
VPTANVSVVDLTCR	0	1	Unmodified	1529.7872	0.78717704	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0.577			1	4	1	19.191	19.191	2;3	4.0098999999999996E-65	12068	DP1063-4	280.38	234.47			2.3318	1.6018	29.214	4	0	Median	159450000	47418000	112030000	3624	102	3414	7439;7440;7441;7442;7443;7444	16593;16594;16595;16596;16597;16598;16599;16600;16601;16602;16603	16595		11	9606
VPTTEKPTVTVNFR	1	1	Unmodified	1587.8621	0.86205654	442	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	1	0	1					16.819	16.819	3	0.0047947	6484	DP1063-1	91.307	58.115			NaN	NaN	NaN	0	0	Median	6686800	0	6686800	3625	442	3415	7445	16604;16605	16605		2	9606
VPVAPSSSSGGR	0	1	Unmodified	1099.5622	0.56218613	556	Q8NFV4	ABHD11	Alpha/beta hydrolase domain-containing protein 11	yes	yes	0	0	0	5	0					1	15.176	15.176	2	0.030487	7374	DP1063-5	78.113	39.307			NaN	NaN	NaN	0	0	Median	0	0	0	3626	556	3416	7446	16606	16606		1	9606
VPVHDVTDASK	1	0	Unmodified	1166.5932	0.5931519	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				13.458	13.458	2	0.00080714	2850	DP1063-1	128.91	94.984			NaN	NaN	NaN	0	0	Median	10874000	0	10874000	3627	190	3417	7447;7448	16607;16608;16609;16610	16608		4	9606
VQAERPDTMLGVVCGALHVADVSLR	0	2	Oxidation (M)	2708.3738	0.37380377	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	2	2				20.702	20.702	3;4	1.4129E-20	11177	DP1063-1	181.35	181.35			1.2052	1.1137	1.704	4	0	Median	324580000	141560000	183020000	3628	460	3418	7449;7450;7451;7452	16611;16612;16613;16614;16615;16616;16617;16618;16619;16620;16621;16622;16623	16615	604	13	9606
VQAERPDTMLGVVCGALHVADVSLR	0	2	Unmodified	2692.3789	0.37888915	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		2				22.933	22.933	3;4	0.00091165	16019	DP1063-2	62.193	49.759			1.0805	1.0062	NaN	1	0	Median	15894000	5249900	10644000	3629	460	3418	7453;7454	16624;16625	16624		2	9606
VQALEEANNDLENK	1	0	Unmodified	1585.7584	0.75837933	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.5	1.12	1	1	1	1		17.04	17.04	2	1.6408E-17	6742	DP1063-1	224.58	190.49		+	NaN	NaN	NaN	0	0	Median	121230000	121230000	0	3630	251	3419	7455;7456;7457;7458	16626;16627;16628;16629;16630;16631;16632	16626		7	9606
VQALEEANNDLENKIQDWYDK	2	0	Unmodified	2534.1925	0.1925114	251	P35527;CON__P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	3	0			1			21.376	21.376	3	3.1321E-05	15561	DP1063-3	117.37	83.151		+	NaN	NaN	NaN	0	0	Median	7835600	7835600	0	3631	251	3420	7459	16633	16633		1	9606
VQAQGPGLK	1	0	Unmodified	896.50797	0.50796571	70	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	0	1					13.762	13.762	2	0.011456	3179	DP1063-1	91.906	59.094			2.3224	1.9663	NaN	1	0	Median	2205600	669690	1535900	3632	70	3421	7460	16634;16635	16634		2	9606
VQAQVIQETIVPK	1	0	Unmodified	1451.8348	0.83477916	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	3	1		1		1		18.398	18.398	2	0.00071941	9869	DP1063-2	132.25	111.46			1.3035	1.0906	NaN	1	0	Median	63045000	27357000	35687000	3633	513	3422	7461;7462	16636;16637;16638;16639;16640	16636		5	9606
VQDDEVGDGTTSVTVLAAELLR	0	1	Unmodified	2287.1543	0.15433498	419	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			24.803	24.803	2	2.508E-63	19782	DP1063-3	261.64	239.32			5.4756	3.9686	NaN	1	0	Median	13949000	2447900	11501000	3634	419	3423	7463	16641;16642;16643;16644;16645;16646;16647	16642		7	9606
VQEFEHVNGR	0	1	Unmodified	1213.584	0.5839842	493	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	0	1					14.333	14.333	3	0.054551	3803	DP1063-1	56.359	33.442			NaN	NaN	NaN	0	0	Median	826990	0	826990	3635	493	3424	7464	16648	16648		1	9606
VQEFNNCLNR	0	1	Unmodified	1292.5932	0.59316868	620	Q9H792	PEAK1	Pseudopodium-enriched atypical kinase 1	yes	yes	0	0	0	1	0	2					16.217	16.217	2	0.041608	5932	DP1063-1	82.426	46.092			NaN	NaN	NaN	0	0	Median	0	0	0	3636	620	3425	7465;7466	16649;16650	16650		2	9606
VQENCIDLVGR	0	1	Unmodified	1301.6398	0.63978452	73	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				17.69	17.69	2	0.032524	8956	DP1063-2	79.986	28.926			NaN	NaN	NaN	0	0	Median	0	0	0	3637	73	3426	7467	16651	16651		1	9606
VQEQVHTLLSQDQAQAAR	0	1	Unmodified	2021.029	0.029015303	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			2			16.548	16.548	2;3	6.071099999999999E-126	8892	DP1063-3	333.59	333.59			1.5566	1.1757	4.3606	2	0	Median	75495000	27554000	47940000	3638	449	3427	7468;7469	16652;16653;16654;16655;16656;16657;16658;16659	16652		8	9606
VQGGALEDSQLVAGVAFK	1	0	Unmodified	1787.9418	0.94176342	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			20.847	20.847	2	0.0029444	14833	DP1063-3	149.82	107.58			NaN	NaN	NaN	0	0	Median	20052000	0	20052000	3639	601	3428	7470	16660;16661	16660		2	9606
VQGSDSDEEVVVATTR	0	1	Unmodified	1690.801	0.80097243	217	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	2	0		1				16.816	16.816	2	0.00085106	7763	DP1063-2	147.26	110.73			NaN	NaN	NaN	0	0	Median	5691200	0	5691200	3640	217	3429	7471	16662;16663	16662		2	9606
VQGTPRGLGPR	0	2	Unmodified	1136.6414	0.6414395	693				yes	yes	0	0	1	1	0	1					13.641	13.641	3	0.0008781	3024	DP1063-1	106.4	6.7119	+		1.9167	1.7617	NaN	1	0	Median	1002000	358170	643780	3641	693	3430	7472	16664;16665	16664		2	9606
VQIAVANAQELLQR	0	1	Unmodified	1551.8733	0.87328993	677	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	5	0					1	20.221	20.221	2	3.165E-11	13619	DP1063-5	204.69	140.59			NaN	NaN	NaN	0	0	Median	20244000	0	20244000	3642	677	3431	7473	16666;16667	16666		2	9606
VQISPDSGGLPER	0	1	Unmodified	1353.6888	0.6888432	570	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	2	0		1				17.026	17.026	2	0.006131	8060	DP1063-2	93.258	69.269			2.0585	1.4976	NaN	1	0	Median	13118000	4938500	8179300	3643	570	3432	7474	16668	16668		1	9606
VQLDLAETDLSQGVAR	0	1	Unmodified	1713.8897	0.88972785	607	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	2	0		1				20.2	20.2	2	0.002324	12392	DP1063-2	128.36	86.658			NaN	NaN	NaN	0	0	Median	0	0	0	3644	607	3433	7475	16669	16669		1	9606
VQQAELHTGSLPR	0	1	Unmodified	1434.7579	0.75792582	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.47	1.09	15	2		1	1	20.925	20.925	2;3	8.685499999999999E-80	4962	DP1063-1	282.05	231.6			1.2175	0.95242	18.837	8	0	Median	2013699999.9999998	972870000	1040799999.9999999	3645	460	3434	7476;7477;7478;7479;7480;7481;7482;7483;7484;7485;7486;7487;7488;7489;7490;7491;7492;7493;7494	16670;16671;16672;16673;16674;16675;16676;16677;16678;16679;16680;16681;16682;16683;16684;16685;16686;16687;16688;16689;16690;16691;16692;16693;16694;16695;16696;16697;16698;16699;16700;16701;16702;16703;16704;16705;16706;16707;16708;16709;16710;16711;16712	16676		43	9606
VQQTVQDLFGR	0	1	Unmodified	1289.6728	0.67279921	263	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			19.393	19.393	2	2.3225E-14	12757	DP1063-3	206.43	139.26			1.9056	1.4578	6.5299	2	0	Median	106580000	36807000	69772000	3646	263	3435	7495;7496	16713;16714;16715;16716;16717;16718;16719;16720	16717		8	9606
VQSLQATFGTFESILR	0	1	Unmodified	1795.9468	0.9468488	449	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			24.373	24.373	2	2.9725E-14	19252	DP1063-3	201.48	201.48			1.3608	0.9808	NaN	1	0	Median	14853000	6096400	8756900	3647	449	3436	7497	16721;16722;16723;16724	16721		4	9606
VQSPEPPAPER	0	1	Unmodified	1205.6041	0.60405094	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1	0	1					14.85	14.85	2	3.9903E-05	4334	DP1063-1	141.89	72.259			NaN	NaN	NaN	0	0	Median	1265700	0	1265700	3648	484	3437	7498	16725	16725		1	9606
VQVEYKGETK	2	0	Unmodified	1179.6136	0.61355299	153	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			1			13.475	13.475	2	0.0076543	4855	DP1063-3	175.51	124.91			NaN	NaN	NaN	0	0	Median	7905700	7905700	0	3649	153	3438	7499	16726;16727	16727		2	9606
VQVPNMQDK	1	0	Oxidation (M)	1073.5175	0.51754412	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				13.726	13.726	2	0.0074065	3785	DP1063-2	88.37	50.811			0.92214	0.77147	NaN	1	0	Median	8955300	4723400	4232000	3650	513	3439	7500	16728;16729;16730;16731	16731	657	4	9606
VQVPNMQDKTEWK	2	0	Oxidation (M)	1617.7821	0.78209166	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	1	2	0		1				15.5	15.5	3	0.0031804	6059	DP1063-2	72.496	72.496			1.0944	1.0455	NaN	1	0	Median	19669000	9457400	10212000	3651	513	3440	7501	16732	16732	657	1	9606
VQVQDNEGCPVEALVK	1	0	Unmodified	1783.8774	0.87744861	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					18.816	18.816	2	1.5005E-07	8912	DP1063-1	194.39	145.31			NaN	NaN	NaN	0	0	Median	13614000	0	13614000	3652	190	3441	7502	16733;16734	16734		2	9606
VQVSYKGETK	2	0	Unmodified	1137.603	0.60298831	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			2			13.404	13.404	2;3	7.2535E-06	4770	DP1063-3	142	95.866			3.4383	3.0849	NaN	1	0	Median	51451000	12020000	39431000	3653	149	3442	7503;7504	16735;16736;16737;16738;16739	16736		5	9606
VQYPQSQACK	1	0	Unmodified	1207.5656	0.56555694	487	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					13.932	13.932	2	0.029522	3359	DP1063-1	66.435	43.115			1.7332	1.4389	NaN	1	0	Median	2672600	1349900	1322700	3654	487	3443	7505	16740	16740		1	9606
VREYELR	0	2	Unmodified	963.51378	0.51377937	399	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	1	5	0					1	14.195	14.195	2	0.053397	6189	DP1063-5	85.064	41.818			2.0898	1.7783	NaN	1	0	Median	10290000	3224000	7065700	3655	399	3444	7506	16741	16741		1	9606
VRPCVVYGGADIGQQIR	0	2	Unmodified	1886.9785	0.97850006	42	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	3	0			1			17.759	17.759	2	0.0088102	10512	DP1063-3	124.07	86.468			NaN	NaN	NaN	0	0	Median	5909700	0	5909700	3656	42	3445	7507	16742	16742		1	9606
VSALDLAVLDQVEAR	0	1	Unmodified	1597.8675	0.86753585	473	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	4	0				1		22.465	22.465	2	0.0030033	16303	DP1063-4	107.09	62.904			NaN	NaN	NaN	0	0	Median	1745200	0	1745200	3657	473	3446	7508	16743	16743		1	9606
VSALNSVHCEHVEDEGESR	0	1	Unmodified	2152.9444	0.94435897	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.95	1.21	11	4	3	2	1	15.844	15.844	2;3;4	1.0567000000000001E-128	4500	DP1063-1	350.14	350.14			1.3587	1.1151	19.508	14	0	Median	1783699999.9999998	774250000	1009499999.9999999	3658	460	3447	7509;7510;7511;7512;7513;7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526;7527;7528;7529	16744;16745;16746;16747;16748;16749;16750;16751;16752;16753;16754;16755;16756;16757;16758;16759;16760;16761;16762;16763;16764;16765;16766;16767;16768;16769;16770;16771;16772;16773;16774;16775;16776;16777;16778;16779;16780;16781;16782;16783;16784;16785;16786;16787;16788;16789;16790;16791;16792;16793;16794;16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805;16806;16807;16808	16760		65	9606
VSALNSVHCEHVEDEGESRYK	1	1	Unmodified	2444.1027	0.10265053	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					15.071	15.071	3;4	5.0202E-06	4690	DP1063-1	135.95	135.95			1.7428	1.625	7.8869	2	0	Median	14344000	4968100	9376200	3659	460	3448	7530;7531	16809;16810;16811;16812;16813;16814	16813		6	9606
VSAPGVQGDVK	1	0	Unmodified	1055.5611	0.56112349	455	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1.5	0.5	1	1				14.878	14.878	2	0.029107	4434	DP1063-1	79.974	23.253			NaN	NaN	NaN	0	0	Median	8483100	0	8483100	3660	455	3449	7532;7533	16815;16816	16815		2	9606
VSELKEELKK	3	0	Unmodified	1201.6918	0.69180331	429	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	2	0		1				13.501	13.501	3	0.0049677	3461	DP1063-2	73.067	55.202			3.1027	3.4136	NaN	1	0	Median	11683000	2908400	8774400	3661	429	3450	7534	16817;16818	16817		2	9606
VSFELFADK	1	0	Unmodified	1054.5335	0.53351176	401	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	3.33	1.7	1			1	1	21.029	21.029	2	0.0044307	14546	DP1063-4	107.69	65.297			1.4516	1.2287	NaN	1	0	Median	17578000	10439000	7138900	3662	401	3451	7535;7536;7537	16819;16820;16821;16822;16823;16824;16825;16826	16821		8	9606
VSFELFADKVPK	2	0	Unmodified	1378.7497	0.74965254	401	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	5	0					2	20.019	20.019	2;3	1.2161E-05	13377	DP1063-5	150.04	150.04			2.1756	2.1258	0.43347	2	0	Median	45787000	14081000	31707000	3663	401	3452	7538;7539	16827;16828;16829;16830;16831;16832	16828		6	9606
VSGVECMIIANDATVK	1	0	Oxidation (M)	1721.8328	0.8328066	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.6	0.8			3	1	1	18.334	18.334	2;3	1.7467000000000003E-30	11030	DP1063-3	231.74	231.74			1.6335	1.3117	10.496	5	0	Median	651960000	249700000	402270000	3664	624	3453	7540;7541;7542;7543;7544	16833;16834;16835;16836;16837;16838;16839;16840;16841;16842;16843;16844;16845;16846;16847;16848;16849;16850	16837	755	18	9606
VSGVECMIIANDATVK	1	0	Unmodified	1705.8379	0.83789198	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	0.433			3	1		19.855	19.855	2;3	1.5119E-53	13411	DP1063-3	262.11	222.94			1.6289	1.308	1.2588	2	0	Median	331470000	125760000	205710000	3665	624	3453	7545;7546;7547;7548	16851;16852;16853;16854;16855;16856;16857;16858;16859	16855		9	9606
VSITCSGSSNNIGR	0	1	Unmodified	1450.6834	0.68344025	7	CON__ENSEMBL:ENSBTAP00000014147			yes	yes	0	0	0	5	0					1	15.533	15.533	2	0.0029553	7744	DP1063-5	105.13	30.758		+	NaN	NaN	NaN	0	0	Median	2472100	2472100	0	3666	7	3454	7549	16860;16861	16861		2	
VSLDVNHFAPDELTVK	1	0	Unmodified	1782.9152	0.91521432	104	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	19.881	19.881	3	0.00019608	13169	DP1063-5	131.96	131.96			1.7486	1.4802	NaN	1	0	Median	25057000	9525400	15532000	3667	104	3455	7550	16862;16863;16864;16865	16862		4	9606
VSQGSKDPAEGDGAQPEETPR	1	1	Unmodified	2153.9825	0.98251862	491	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	1	2	0		1				13.794	13.794	3	3.5663E-05	3833	DP1063-2	124.76	89.079			NaN	NaN	NaN	0	0	Median	3728400	0	3728400	3668	491	3456	7551	16866;16867	16866		2	9606
VSQPIEGHAASFAQFK	1	0	Unmodified	1715.8631	0.86311917	428	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					17.625	17.625	3	0.00021737	7415	DP1063-1	85.006	49.889			1.3496	1.0467	NaN	1	0	Median	6560200	3481400	3078800	3669	428	3457	7552	16868;16869	16868		2	9606
VSSDNVADLHEK	1	0	Unmodified	1312.6259	0.62590859	225	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	5	0					2	14.221	14.221	2;3	0.0019382	6116	DP1063-5	82.774	82.774			2.2653	1.9175	NaN	1	0	Median	15793000	4247500	11545000	3670	225	3458	7553;7554	16870;16871;16872;16873	16870		4	9606
VSVADHSLHLSK	1	0	Unmodified	1291.6884	0.68844927	462	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					2	15	15	2;3	5.2431E-06	7161	DP1063-5	154.24	87.971			2.3711	2.0071	NaN	1	0	Median	32200000	8492600	23708000	3671	462	3459	7555;7556	16874;16875;16876;16877;16878;16879	16879		6	9606
VSVHVIEGDHR	0	1	Unmodified	1246.6418	0.64183343	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.33	0.471	2	1				14.184	14.184	2;3	0.0003693	3620	DP1063-1	104.82	86.152			2.7212	2.0623	8.7182	2	0	Median	25470000	6854800	18615000	3672	303	3460	7557;7558;7559	16880;16881;16882;16883;16884;16885;16886;16887	16881		8	9606
VSVIQFLEAPIGDEDAEEAAAEKR	1	1	Unmodified	2586.2813	0.2813264	484	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	1	1.5	0.5	1	1				22.848	22.848	3	0.00013795	15835	DP1063-2	105.72	60.479			NaN	NaN	NaN	0	0	Median	7656000	0	7656000	3673	484	3461	7560;7561	16888;16889;16890	16889		3	9606
VTADVINAAEK	1	0	Unmodified	1129.5979	0.59790293	57	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			2			16.213	16.213	2	0.0086775	8475	DP1063-3	93.096	33.076			NaN	NaN	NaN	0	0	Median	21629000	0	21629000	3674	57	3462	7562;7563	16891;16892;16893	16892		3	9606
VTAEVVLAHLGGGSTSR	0	1	Unmodified	1652.8846	0.8845829	105	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	3	0			1			18.972	18.972	3	0.00014275	12219	DP1063-3	114.31	91.835			2.1447	1.5555	NaN	1	0	Median	13837000	5833700	8003000	3675	105	3463	7564	16894	16894		1	9606
VTAIHIDPATHR	0	1	Unmodified	1329.7153	0.71533272	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				14.803	14.803	3	0.00037298	4347	DP1063-1	101.89	101.89			2.3564	1.8073	29.239	2	0	Median	31212000	8542900	22669000	3676	303	3464	7565;7566	16895;16896;16897;16898;16899;16900	16898		6	9606
VTAQGPGLEPSGNIANK	1	0	Unmodified	1651.8529	0.85294842	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				16.41	16.41	2	8.2749E-07	7224	DP1063-2	182.23	144.89			7.9841	6.6106	NaN	1	0	Median	31786000	2991500	28794000	3677	190	3465	7567;7568	16901;16902;16903;16904;16905	16905		5	9606
VTASPQSLCALR	0	1	Unmodified	1301.6762	0.67617003	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	1	0	1					17.652	17.652	2	1.4937E-06	7425	DP1063-1	175.93	119.12		+	NaN	NaN	NaN	0	0	Median	6973600	6973600	0	3678	8	3466	7569	16906;16907	16906		2	
VTDALNATR	0	1	Unmodified	959.50361	0.50360861	151	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			14.593	14.593	2	0.0054442	6260	DP1063-3	174.52	88.047			NaN	NaN	NaN	0	0	Median	61600000	0	61600000	3679	151	3467	7570	16908	16908		1	9606
VTDKLTPIHDR	1	1	Unmodified	1293.7041	0.70409934	224	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	1	5	0					1	13.825	13.825	3	0.016289	5647	DP1063-5	63.727	40.501			1.6185	1.3798	NaN	1	0	Median	4637300	1939500	2697800	3680	224	3468	7571	16909	16909		1	9606
VTEDTSSVLR	0	1	Unmodified	1105.5615	0.56151742	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.5	1.12		1	1	1	1	15.641	15.641	2	3.6656E-14	7640	DP1063-3	197.3	197.3			1.4441	1.4123	16.284	4	0	Linear	637800000	248760000	389030000	3681	110	3469	7572;7573;7574;7575	16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928	16916		19	9606
VTEGGEPYR	0	1	Unmodified	1006.472	0.47197413	491	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	2	0		1				13.888	13.888	2	0.03389	3973	DP1063-2	70.919	24.967			2.3668	1.7325	NaN	1	0	Median	10087000	2829400	7257400	3682	491	3470	7576	16929	16929		1	9606
VTELALTASDR	0	1	Unmodified	1174.6194	0.61936665	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.29	17.29	2	0.00049972	6994	DP1063-1	122.96	78.585			2.311	1.8592	NaN	1	0	Median	14827000	3814500	11012000	3683	420	3471	7577	16930;16931;16932;16933	16930		4	9606
VTELQQQPLCTSVNTIYDNAVQGLR	0	1	Unmodified	2846.4233	0.42325639	575	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	4	0				1		22.884	22.884	3	0.0031182	16804	DP1063-4	71.143	46.684			NaN	NaN	NaN	0	0	Median	1136400	0	1136400	3684	575	3472	7578	16934;16935	16935		2	9606
VTFSEDDEIINPEDVDPSVGR	0	1	Unmodified	2332.0707	0.070664925	458	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		21.298	21.298	2	0.00022314	14848	DP1063-4	151.22	124.12			NaN	NaN	NaN	0	0	Median	7226400	0	7226400	3685	458	3473	7579	16936;16937	16937		2	9606
VTGEADVEFATHEDAVAAMSK	1	0	Oxidation (M)	2192.9896	0.98957783	237	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3.5	0.5			1	1		17.592	17.592	3	1.9259E-06	10302	DP1063-3	126.22	86.084			1.5033	1.2072	NaN	1	0	Median	35789000	10707000	25083000	3686	237	3474	7580;7581	16938;16939;16940;16941	16938	280	4	9606
VTGEADVEFATHEEAVAAMSK	1	0	Oxidation (M)	2207.0052	0.005227897	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				1		18.297	18.297	3	1.794E-05	10847	DP1063-4	84.499	75.315			1.5356	1.0629	NaN	1	0	Median	20921000	7184100	13737000	3687	327	3475	7582	16942;16943;16944	16942	418	3	9606
VTGEADVEFATHEEAVAAMSK	1	0	Unmodified	2191.0103	0.010313275	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		19.135	19.135	3	2.4669E-05	12061	DP1063-4	129.2	106.97			NaN	NaN	NaN	0	0	Median	3467000	0	3467000	3688	327	3475	7583	16945;16946;16947	16945		3	9606
VTHAVVTVPAYFNDAQR	0	1	Unmodified	1886.9639	0.96389585	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			18.512	18.512	3	0.00085468	11584	DP1063-3	72.446	56.819			2.7775	2.0624	NaN	1	0	Median	28813000	8153200	20660000	3689	152	3476	7584	16948;16949;16950	16948		3	9606
VTIAQGGVLPNIQAVLLPK	1	0	Unmodified	1930.1615	0.16153303	145	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	no	no	0	0	0	4.55	1.16	1			1	9	26.148	26.148	2	0.00022055	22515	DP1063-5	92.792	92.792			1.5217	1.2881	18.598	2	0	Median	16347000	9350300	6996800	3690	145	3477	7585;7586;7587;7588;7589;7590;7591;7592;7593;7594;7595	16951;16952;16953;16954;16955;16956;16957;16958;16959;16960;16961;16962;16963;16964;16965;16966	16958		16	9606
VTKCCTESLVNR	1	1	Unmodified	1465.7017	0.70173285	14	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	1	3	0			1			14.141	14.141	3	0.00093494	5727	DP1063-3	118.61	91.197		+	NaN	NaN	NaN	0	0	Median	10593000	10593000	0	3691	14	3478	7596	16967;16968	16968		2	9606
VTLTSEEEAR	0	1	Unmodified	1133.5564	0.55643205	91	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	3.5	0.5			1	1		15.144	15.144	2	2.2347E-08	6764	DP1063-4	176.44	108.46			2.5628	1.8794	NaN	1	0	Median	42703000	9990900	32712000	3692	91	3479	7597;7598	16969;16970;16971;16972;16973;16974	16974		6	9606
VTMQNLNDR	0	1	Unmodified	1089.5237	0.52369213	19;12;17	CON__P13645;P13645;CON__P02535-1;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;CON__Q3ZAW8;CON__Q9Z2K1;Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Y8;CON__Q7Z3Z0;CON__Q7Z3Y9;Q7Z3Y9;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779	KRT10;KRT28;KRT27;KRT25;KRT26;KRT14;KRT16	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	0	1.5	0.5	1	1				15.484	15.484	2	0.00083628	5117	DP1063-1	136.8	58.874		+	0.39223	0.28317	NaN	1	0	Median	28081000	21843000	6238000	3693	19;12;17	3480	7599;7600	16975;16976;16977;16978	16975		4	9606
VTMQNLNDR	0	1	Oxidation (M)	1105.5186	0.51860675	19;12;17	CON__P13645;P13645;CON__P02535-1;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;CON__Q3ZAW8;CON__Q9Z2K1;Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Y8;CON__Q7Z3Z0;CON__Q7Z3Y9;Q7Z3Y9;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779	KRT10;KRT28;KRT27;KRT25;KRT26;KRT14;KRT16	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	1	0	3	0.816		1	1	1		13.266	13.266	2	0.0010945	4564	DP1063-3	136.27	95.49		+	NaN	NaN	NaN	0	0	Median	146790000	146790000	0	3694	19;12;17	3480	7601;7602;7603	16979;16980;16981;16982;16983;16984	16982	11	6	9606
VTNGAFTGEISPGMIK	1	0	Oxidation (M)	1636.8131	0.81305744	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	1	0	5	0					1	18.392	18.392	2	0.0088039	11282	DP1063-5	65.495	40.642			2.3064	1.9524	NaN	1	0	Median	8970500	3849100	5121400	3695	347	3481	7604	16985;16986	16986	433	2	9606
VTNLSEDTR	0	1	Unmodified	1033.504	0.50400254	77	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	4	0				1		14.064	14.064	2	6.3448E-13	5361	DP1063-4	189.82	137.04			3.057	1.9161	NaN	1	0	Median	10580000	3016300	7563200	3696	77	3482	7605	16987;16988;16989;16990	16987		4	9606
VTQDELKEVFEDAAEIR	1	1	Unmodified	1990.9848	0.98475045	187	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.5		2	2			22.306	22.306	2;3	8.6251E-07	15143	DP1063-2	176.56	176.56			1.5921	1.6668	8.4155	3	0	Plateau	57510000	20560000	36950000	3697	187	3483	7606;7607;7608;7609	16991;16992;16993;16994;16995;16996;16997;16998	16992		8	9606
VTQSNFAVGYK	1	0	Unmodified	1212.6139	0.61388734	191	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	4	0				1		16.721	16.721	2	0.018944	8764	DP1063-4	73.233	73.233			1.9514	1.3507	NaN	1	0	Median	12909000	4275600	8633500	3698	191	3484	7610	16999	16999		1	9606
VTSAHKGPDETLR	1	1	Unmodified	1409.7263	0.72629134	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	1	4	0				1		12.685	12.685	3	0.014582	3903	DP1063-4	80.318	56.363			NaN	NaN	NaN	0	0	Median	1379000	0	1379000	3699	194	3485	7611	17000;17001	17001		2	9606
VTSEELHYFVQNHFTSAR	0	1	Unmodified	2164.0338	0.033766329	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				2		19.16	19.16	3;4	5.2931E-05	12084	DP1063-4	116.04	116.04			1.369	0.88251	9.6644	2	0	Median	26987000	13784000	13203000	3700	198	3486	7612;7613	17002;17003;17004;17005;17006	17002		5	9606
VTSVVFHPSQDLVFSASPDATIR	0	1	Unmodified	2472.2649	0.26488848	655	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	3	0			1			20.629	20.629	3	0.0072465	14550	DP1063-3	70.994	40.407			NaN	NaN	NaN	0	0	Median	8961800	0	8961800	3701	655	3487	7614	17007	17007		1	9606
VTVAGGVHISGLHTESAPR	0	1	Unmodified	1886.9963	0.99625861	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				16.447	16.447	3	1.3424E-11	6156	DP1063-1	179.66	179.66			2.534	1.9687	19.97	2	0	Median	45833000	13867000	31966000	3702	303	3488	7615;7616	17008;17009;17010;17011;17012;17013;17014	17008		7	9606
VTVLFAGQHIAK	1	0	Unmodified	1282.7398	0.73975656	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	2					17.46	17.46	2;3	0.0024633	7191	DP1063-1	112.75	46.127			15.805	12.789	NaN	1	0	Median	19561000	988700	18572000	3703	190	3489	7617;7618	17015;17016;17017;17018	17018		4	9606
VTWDGHSGSMAR	0	1	Oxidation (M)	1318.5724	0.57243324	513	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		2				14.089	14.089	2;3	0.0029122	4240	DP1063-2	94.409	80.202			1.419	1.0713	0.14483	2	0	Median	45450000	17040000	28410000	3704	513	3490	7619;7620	17019;17020;17021;17022;17023;17024	17024	658	6	9606
VTYTPMAPGSYLISIK	1	0	Unmodified	1739.9168	0.91679423	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					21.884	21.884	2	0.05425	12693	DP1063-1	75.788	46.255			NaN	NaN	NaN	0	0	Median	1944600	0	1944600	3705	190	3491	7621	17025	17025		1	9606
VVAGVLHLGNIDFEEAGSTSGGCNLK	1	0	Unmodified	2643.2963	0.29626496	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				20.797	20.797	3	0.0020351	13249	DP1063-2	72.755	57.495			NaN	NaN	NaN	0	0	Median	56643000	0	56643000	3706	654	3492	7622	17026	17026		1	9606
VVALSMSPVDDTFISGSLDK	1	0	Oxidation (M)	2096.0347	0.034737111	538	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		21.385	21.385	2	0.00026385	15010	DP1063-4	119.65	85.964			NaN	NaN	NaN	0	0	Median	4219900	0	4219900	3707	538	3493	7623	17027;17028;17029	17029	670	3	9606
VVCGVSEQTTCQEVVIALAQAIGQTGR	0	1	Unmodified	2873.4375	0.43752624	438	Q02833	RASSF7	Ras association domain-containing protein 7	yes	yes	0	0	0	4	0				1		25.018	25.018	3	0.00062753	19218	DP1063-4	80.132	54.982			NaN	NaN	NaN	0	0	Median	1772500	0	1772500	3708	438	3494	7624	17030	17030		1	9606
VVDALGNAIDGK	1	0	Unmodified	1170.6245	0.62445203	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.9	17.9	2	0.00057854	10709	DP1063-3	128.03	106.66			1.3899	1.1161	NaN	1	0	Median	60280000	25247000	35033000	3709	207	3495	7625	17031;17032;17033	17032		3	9606
VVDALGNAIDGKGPIGSK	2	0	Unmodified	1709.9312	0.93119874	207	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			17.987	17.987	3	0.053806	10918	DP1063-3	48.372	31.376			1.2472	1.119	NaN	1	0	Median	18586000	9231500	9354900	3710	207	3496	7626	17034	17034		1	9606
VVDLLAPYAK	1	0	Unmodified	1087.6277	0.6277465	121	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.194	20.194	2	0.00755	13970	DP1063-3	89.698	89.698			2.4867	1.9968	NaN	1	0	Median	15936000	4238000	11698000	3711	121	3497	7627;7628	17035;17036;17037	17035		3	9606
VVDLMAHMASKE	1	0	2 Oxidation (M)	1361.6319	0.63192195	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	2	1	4	0				2		13.955	13.955	2;3	0.001062	5225	DP1063-4	86.014	64.328			2.4838	1.7192	13.085	2	0	Median	46254000	10856000	35398000	3712	102	3498	7629;7630	17038;17039;17040;17041;17042;17043;17044	17041	79;80	7	9606
VVDLMAHMASKE	1	0	Oxidation (M)	1345.637	0.63700733	102	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	1	4	0				1		15.51	15.51	2	0.044456	7287	DP1063-4	74.944	50.068			NaN	NaN	NaN	0	0	Median	3162900	0	3162900	3713	102	3498	7631	17045	17045	79;80	1	9606
VVDSMEDEVQR	0	1	Oxidation (M)	1321.582	0.58199487	665	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	3	0			1			14.071	14.071	2	0.00031891	5553	DP1063-3	121.73	94.429			1.4958	1.1448	NaN	1	0	Median	7518300	3372100	4146200	3714	665	3499	7632	17046;17047	17046	773	2	9606
VVEEAPSIFLDAETR	0	1	Unmodified	1674.8465	0.84646606	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			21.081	21.081	2	7.6052999999999995E-22	15069	DP1063-3	224.42	224.42			1.2702	1.1326	NaN	1	0	Median	343480000	134920000	208570000	3715	110	3500	7633;7634	17048;17049;17050;17051;17052;17053	17051		6	9606
VVEEAPSIFLDAETRR	0	2	Unmodified	1830.9476	0.94757708	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.14	0.833		2	2	3		19.61	19.61	2;3	2.8705000000000004E-54	13076	DP1063-3	263.07	263.07			1.3974	1.2776	15.225	5	0	Median	478510000	185930000	292580000	3716	110	3501	7635;7636;7637;7638;7639;7640;7641	17054;17055;17056;17057;17058;17059;17060;17061;17062;17063;17064;17065;17066;17067;17068;17069;17070;17071;17072;17073;17074	17065		21	9606
VVEGTPLIDGR	0	1	Unmodified	1154.6295	0.62953741	492	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					17.449	17.449	2	0.0018523	7185	DP1063-1	122.96	78.613			NaN	NaN	NaN	0	0	Median	1928000	0	1928000	3717	492	3502	7642	17075;17076	17076		2	9606
VVEIAPAAHLDPQLR	0	1	Unmodified	1627.9046	0.90459006	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.06	0.492	3	46	2	2		28.102	28.102	2;3	3.5424000000000004E-29	9942	DP1063-2	218.94	218.94			1.2281	1.0537	19.774	14	0	Median	2047399999.9999998	961700000	1085700000	3718	154	3503	7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655;7656;7657;7658;7659;7660;7661;7662;7663;7664;7665;7666;7667;7668;7669;7670;7671;7672;7673;7674;7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695	17077;17078;17079;17080;17081;17082;17083;17084;17085;17086;17087;17088;17089;17090;17091;17092;17093;17094;17095;17096;17097;17098;17099;17100;17101;17102;17103;17104;17105;17106;17107;17108;17109;17110;17111;17112;17113;17114;17115;17116;17117;17118;17119;17120;17121;17122;17123;17124;17125;17126;17127;17128;17129;17130;17131;17132;17133;17134;17135;17136;17137;17138;17139;17140;17141;17142;17143;17144;17145;17146;17147;17148;17149;17150;17151;17152;17153;17154;17155;17156;17157;17158;17159;17160;17161;17162;17163;17164;17165;17166;17167;17168;17169;17170;17171	17088		95	9606
VVFEQTK	1	0	Unmodified	849.45962	0.45961853	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	14.726	14.726	2	0.030683	6790	DP1063-5	97.473	58.667			3.9745	3.3644	NaN	1	0	Median	28587000	5474500	23112000	3719	347	3504	7696	17172;17173	17172		2	9606
VVFVFGPDK	1	0	Unmodified	1006.5488	0.54876789	229	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	5	0					1	20.113	20.113	2	0.055251	13509	DP1063-5	82.426	53.05			NaN	NaN	NaN	0	0	Median	0	0	0	3720	229	3505	7697	17174	17174		1	9606
VVGAMQLYSVDR	0	1	Oxidation (M)	1352.6758	0.67583567	428	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	1	0	1	0	1					17.715	17.715	2	0.0084491	7578	DP1063-1	79.148	41.062			1.8146	1.4404	NaN	1	0	Median	6055800	2046900	4008900	3721	428	3506	7698	17175	17175	542	1	9606
VVGSEFVQK	1	0	Unmodified	991.53385	0.53384611	282	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	4	0				1		16.137	16.137	2	0.032632	8120	DP1063-4	84.568	49.212			NaN	NaN	NaN	0	0	Median	4599300	0	4599300	3722	282	3507	7699	17176;17177	17176		2	9606
VVHSYEELEENYTR	0	1	Unmodified	1766.8111	0.81114318	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.55	1.12	2	11	3	2	2	20.993	20.993	2;3	7.9099E-139	10198	DP1063-3	340.93	340.93			1.4968	1.4647	9.2827	8	0	Linear	1686499999.9999998	627900000	1058599999.9999999	3723	154	3508	7700;7701;7702;7703;7704;7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715;7716;7717;7718;7719	17178;17179;17180;17181;17182;17183;17184;17185;17186;17187;17188;17189;17190;17191;17192;17193;17194;17195;17196;17197;17198;17199;17200;17201;17202;17203;17204;17205;17206;17207;17208;17209;17210;17211;17212;17213;17214;17215;17216;17217;17218;17219;17220;17221	17201		44	9606
VVIGMDVAASEFFR	0	1	Oxidation (M)	1555.7705	0.77046434	123	P06733	ENO1	Alpha-enolase	yes	yes	0	1	0	2.5	1.5	1			1		21.449	21.449	2	0.00057043	15029	DP1063-4	150.46	107.74			1.9914	1.5139	NaN	1	0	Median	51860000	19149000	32711000	3724	123	3509	7720;7721	17222;17223;17224;17225;17226;17227	17227	116	6	9606
VVLAYEPVWAIGTGK	1	0	Unmodified	1601.8817	0.88172935	347	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	22.316	22.316	2	3.4487E-15	16134	DP1063-5	208.74	156.25			2.0041	1.6964	NaN	1	0	Median	28557000	9455100	19102000	3725	347	3510	7722	17228;17229;17230;17231;17232	17228		5	9606
VVLDDKDYFLFR	1	1	Unmodified	1528.7926	0.79257999	360	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	5	0					1	21.019	21.019	3	0.0014046	14663	DP1063-5	108.35	83.226			NaN	NaN	NaN	0	0	Median	3990900	0	3990900	3726	360	3511	7723	17233;17234;17235	17233		3	9606
VVLIGGKPDR	1	1	Unmodified	1052.6342	0.63422886	362	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	3	0			1			14.975	14.975	2	0.00071734	6770	DP1063-3	114.5	86.615			2.8533	2.588	NaN	1	0	Median	11601000	3846000	7754500	3727	362	3512	7724	17236;17237	17236		2	9606
VVMALGDYMGASCHACIGGTNVR	0	1	2 Oxidation (M)	2470.0862	0.086154305	350	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	2	0	4	0				2		17.383	17.383	3	0.00044233	9681	DP1063-4	99.846	70.728			NaN	NaN	NaN	0	0	Median	7062300	0	7062300	3728	350	3513	7725;7726	17238;17239	17238	447;448	2	9606
VVQHSNVVINLIGR	0	1	Unmodified	1546.8944	0.89435972	521	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	4	0				1		18.53	18.53	3	0.016453	11270	DP1063-4	50.102	50.102			1.2765	0.79161	NaN	1	0	Median	7887100	3322400	4564800	3729	521	3514	7727	17240;17241	17240		2	9606
VVQMLGSLGGQINK	1	0	Oxidation (M)	1458.7864	0.78644876	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					17.656	17.656	2	0.00070767	7404	DP1063-1	113.67	113.67			2.9964	2.356	NaN	1	0	Median	8240500	2330700	5909800	3730	420	3515	7728	17242;17243	17242	533	2	9606
VVQVSAGDSHTAALTDDGR	0	1	Unmodified	1897.913	0.91298249	186	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	4	0				1		15.784	15.784	3	0.0011048	7629	DP1063-4	105.77	72.158			NaN	NaN	NaN	0	0	Median	4525100	0	4525100	3731	186	3516	7729	17244	17244		1	9606
VVSQYHELVVQAR	0	1	Unmodified	1526.8205	0.82052608	522	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	2	0		1				16.463	16.463	3	0.0020487	7324	DP1063-2	83.53	83.53			2.2145	1.6598	NaN	1	0	Median	33241000	17355000	15885000	3732	522	3517	7730	17245;17246;17247;17248	17246		4	9606
VVSQYSSLLSPMSVNAVMK	1	0	2 Oxidation (M)	2071.033	0.032962972	320	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	2	0	3	0			1			19.712	19.712	2	0.0024688	13279	DP1063-3	105.99	65.267			NaN	NaN	NaN	0	0	Median	9494100	0	9494100	3733	320	3518	7731	17249;17250	17249	389;390	2	9606
VVTDTDETELAR	0	1	Unmodified	1347.6518	0.65178899	112	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	4	0				1		16.029	16.029	2	5.1785E-06	7982	DP1063-4	157.66	113.31			NaN	NaN	NaN	0	0	Median	6169900	0	6169900	3734	112	3519	7732	17251;17252	17251		2	9606
VVTQNICQYR	0	1	Unmodified	1279.6343	0.63430521	553	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				16.148	16.148	2	1.715E-05	6897	DP1063-2	136.16	107.76			2.7901	2.0296	NaN	1	0	Median	13206000	4181500	9024400	3735	553	3520	7733	17253;17254	17254		2	9606
VVVLMGSTSDLGHCEK	1	0	Oxidation (M)	1746.8281	0.82805557	194	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	1	0	4	0				2		16.218	16.218	2;3	0.00028895	8181	DP1063-4	102.65	102.65			2.8487	1.9718	NaN	1	0	Median	17565000	3535100	14030000	3736	194	3521	7734;7735	17255;17256;17257	17255	245	3	9606
VVVQVLAEEPEAVLK	1	0	Unmodified	1621.9291	0.92907347	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				21.035	21.035	2	0.002243	11629	DP1063-1	142.1	126.89			2.2079	1.8302	14.353	2	0	Median	36052000	11350000	24702000	3737	303	3522	7736;7737	17258;17259;17260;17261;17262;17263;17264	17261		7	9606
VWDDGIIDPADTR	0	1	Unmodified	1471.6943	0.69432251	624	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.2	0.4			4	1		24.222	24.222	2	4.08E-05	14067	DP1063-3	162.36	162.36			1.3306	1.0093	15.45	4	0	Median	585290000	239400000	345890000	3738	624	3523	7738;7739;7740;7741;7742	17265;17266;17267;17268;17269;17270;17271;17272;17273	17268		9	9606
VWLDPNETNEIANANSR	0	1	Unmodified	1941.9181	0.91806787	424	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	5	0					1	19.608	19.608	2	2.5548E-14	12873	DP1063-5	195.71	157.41			0.88466	0.66071	NaN	1	0	Median	20588000	9915400	10672000	3739	424	3524	7743	17274;17275;17276	17274		3	9606
VWQVTIGTR	0	1	Unmodified	1058.5873	0.58727866	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		18.781	18.781	2	0.00080232	11599	DP1063-4	126.52	92.519			2.22	1.5091	NaN	1	0	Median	19969000	6340000	13629000	3740	408	3525	7744	17277;17278;17279;17280	17280		4	9606
VYAEDPYK	1	0	Unmodified	983.46001	0.46001246	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.67	0.471		1	2			15.519	15.519	1;2	2.2891E-05	7419	DP1063-3	149.4	115.89			1.2886	1.0764	2.3897	3	0	Plateau	319400000	137470000	181930000	3741	110	3526	7745;7746;7747	17281;17282;17283;17284	17284		3	9606
VYEGERPLTK	1	1	Unmodified	1190.6295	0.62953741	152	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			13.994	13.994	3	0.03892	5529	DP1063-3	69.276	51.802			NaN	NaN	NaN	0	0	Median	15240000	0	15240000	3742	152	3527	7748	17285	17285		1	9606
VYNVTQHAVGIVVNK	1	0	Unmodified	1639.9046	0.90459006	289	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					2	17.4	17.4	2;3	2.1829E-30	9949	DP1063-5	247.88	217.15			2.2529	1.9071	3.1882	2	0	Median	79800000	23202000	56598000	3743	289	3528	7749;7750	17286;17287;17288;17289;17290;17291;17292	17287		7	9606
VYNYNHLMPTR	0	1	Oxidation (M)	1422.6714	0.671419	358	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	5	0					1	15.363	15.363	3	0.0027577	7526	DP1063-5	69.721	57.788			1.5318	1.1441	NaN	1	0	Median	24489000	12480000	12008000	3744	358	3529	7751	17293;17294;17295;17296;17297	17297	455	5	9606
WELLQQVDTSTR	0	1	Unmodified	1474.7416	0.74160705	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				20.679	20.679	2	2.2205E-05	13072	DP1063-2	143.4	81.706		+	NaN	NaN	NaN	0	0	Median	28111000	28111000	0	3745	101	3530	7752	17298	17298		1	9606
WFLTCINQPQFR	0	1	Unmodified	1608.7871	0.78711746	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	4	0				1		22.187	22.187	2	1.7E-08	15919	DP1063-4	180.45	159.45			1.6447	1.0681	NaN	1	0	Median	13963000	5507900	8454700	3746	218	3531	7753	17299;17300;17301;17302	17299		4	9606
WFVEVEGTVK	1	0	Unmodified	1192.6128	0.61282471	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	4	0				1		20.104	20.104	2	0.0020484	13319	DP1063-4	106.6	68.788			1.4444	0.99979	NaN	1	0	Median	6721200	2780600	3940600	3747	460	3532	7754	17303;17304	17303		2	9606
WFYIGSAFR	0	1	Unmodified	1145.5658	0.56581494	27	CON__Q3SZR3			yes	yes	0	0	0	4	0				1		22.378	22.378	2	0.030748	16181	DP1063-4	85.064	40.669		+	NaN	NaN	NaN	0	0	Median	2557100	2557100	0	3748	27	3533	7755	17305	17305		1	
WLSTSIPEAQWHSSLAR	0	1	Unmodified	1967.9854	0.98535957	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	2	0		1				19.922	19.922	3	0.019526	12014	DP1063-2	74.772	18.956			NaN	NaN	NaN	0	0	Median	0	0	0	3749	303	3534	7756	17306	17306		1	9606
WMLAGRPHPTQK	1	1	Oxidation (M)	1436.7347	0.73468796	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					14.537	14.537	2;3	0.0028983	4012	DP1063-1	82.645	82.645			1.0007	0.93306	8.4085	2	0	Median	25948000	12456000	13492000	3750	460	3535	7757;7758	17307;17308;17309;17310;17311;17312	17310	605	6	9606
WMLAGRPHPTQK	1	1	Unmodified	1420.7398	0.73977334	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.126	15.126	3	0.0037259	4740	DP1063-1	88.155	61.405			1.1747	1.0953	NaN	1	0	Median	6592300	2844600	3747700	3751	460	3535	7759	17313;17314	17314		2	9606
WQEQALEQAPR	0	1	Unmodified	1354.663	0.6629628	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	1		1		1		17.25	17.25	2	6.379E-07	8304	DP1063-2	177.7	126.35			NaN	NaN	NaN	0	0	Median	177250000	0	177250000	3752	524	3536	7760;7761	17315;17316;17317	17316		3	9606
WQPDTEEEYEDSSGNVVNKK	2	0	Unmodified	2353.0346	0.03461377	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	1	3	0			1			16.888	16.888	3	2.4458E-05	9346	DP1063-3	95.554	95.554			1.3326	1.1957	NaN	1	0	Median	16358000	5844200	10514000	3753	456	3537	7762	17318;17319;17320;17321	17318		4	9606
WQRPSSPPPFLPAASEEAEPAEGLR	0	2	Unmodified	2718.3402	0.34017869	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2	0		1				19.941	19.941	3	0.00023402	12108	DP1063-2	98.887	81.139			NaN	NaN	NaN	0	0	Median	33258000	0	33258000	3754	524	3538	7763	17322;17323	17323		2	9606
WQYLLMAAEPYETIAFK	1	0	Oxidation (M)	2089.0231	0.023050213	511	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	0	3	0			1			23.655	23.655	2	0.00066061	18437	DP1063-3	106.32	90.224			1.4364	1.1534	NaN	1	0	Median	4782200	2018100	2764000	3755	511	3539	7764	17324;17325;17326	17324	651	3	9606
WSYEMFR	0	1	Unmodified	1017.4378	0.43783723	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.522	20.522	2	0.031735	10985	DP1063-1	97.068	52.457			1.432	1.1509	NaN	1	0	Median	14616000	5444100	9171900	3756	460	3540	7765	17327	17327		1	9606
WVGGPEIELIAIATGGR	0	1	Unmodified	1737.9414	0.94136949	301	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			24.993	24.993	2	0.00096666	20074	DP1063-3	116.51	79.367			NaN	NaN	NaN	0	0	Median	1963900	0	1963900	3757	301	3541	7766	17328;17329;17330	17329		3	9606
YAAVHVHTNAAR	0	1	Unmodified	1308.6687	0.66871688	310	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	0	0	3	0			1			12.887	12.887	3	0.0020974	4198	DP1063-3	81.525	81.525			1.5549	1.2511	NaN	1	0	Median	4261200	1756500	2504600	3758	310	3542	7767	17331;17332;17333;17334	17334		4	9606
YAHQSGFHVDR	0	1	Unmodified	1315.6058	0.60578227	274	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				13.668	13.668	3	0.0064618	3688	DP1063-2	49.28	49.28			1.7601	1.3266	NaN	1	0	Median	7172900	2520900	4652000	3759	274	3543	7768	17335;17336	17335		2	9606
YAHQSGFHVDRR	0	2	Unmodified	1471.7069	0.7068933	274	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	2	0		1				13.03	13.03	3	0.0081676	2956	DP1063-2	59.84	31.407			1.2858	1.1973	NaN	1	0	Median	2779500	1393900	1385600	3760	274	3544	7769	17337	17337		1	9606
YAICSALAASALPALVMSK	1	0	Oxidation (M)	1952.0111	0.011105318	259	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	4	0				1		22.703	22.703	2	0.00012478	16586	DP1063-4	108.66	108.66			2.1892	1.5153	NaN	1	0	Median	7418100	2194800	5223300	3761	259	3545	7770	17338;17339	17339	310	2	9606
YALQMEQLNGILLHLESELAQTR	0	1	Oxidation (M)	2685.3796	0.37960066	118	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	1	0	4	0				1		24.755	24.755	3	1.8356E-05	18959	DP1063-4	139.11	105.35			NaN	NaN	NaN	0	0	Median	3625300	0	3625300	3762	118	3546	7771	17340;17341	17341	105	2	9606
YAPSEAGLHEMDIR	0	1	Oxidation (M)	1603.7301	0.73005609	190	P21333	FLNA	Filamin-A	yes	yes	0	1	0	1	0	1					15.912	15.912	3	0.0025921	5580	DP1063-1	67.234	67.234			13.45	10.805	NaN	1	0	Median	14522000	1337200	13185000	3763	190	3547	7772	17342	17342	240	1	9606
YAPTEAQLNAVDALIDSMSLAK	1	0	Oxidation (M)	2336.157	0.15697751	164	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	1	0	2	0		1				23.174	23.174	2	0.0039839	16293	DP1063-2	96.993	60.223			NaN	NaN	NaN	0	0	Median	3226200	0	3226200	3764	164	3548	7773	17343	17343	204	1	9606
YASSANLHLPK	1	0	Unmodified	1199.6299	0.62987176	21	CON__P34955			yes	yes	0	0	0	3	0			2			15.914	15.914	2;3	0.044222	8086	DP1063-3	45.879	22.13		+	NaN	NaN	NaN	0	0	Median	15599000	15599000	0	3765	21	3549	7774;7775	17344;17345	17345		2	
YCAQDAFFQVK	1	0	Unmodified	1375.6231	0.62307182	459	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		19.753	19.753	2	0.00080753	12861	DP1063-4	118.33	101.11			1.9324	1.3376	NaN	1	0	Median	8198400	2697100	5501300	3766	459	3550	7776	17346;17347	17346		2	9606
YCVEEEEKAAEMHK	2	0	Oxidation (M)	1767.7444	0.74438552	418	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	1	2	0		1				15.04	15.04	3	0.02408	5448	DP1063-2	46.3	46.3			1.0785	1.0303	NaN	1	0	Median	12344000	5285600	7058300	3767	418	3551	7777	17348	17348	519	1	9606
YDAFGEDSSSAMGVENR	0	1	Oxidation (M)	1849.7425	0.74247127	669	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	1	0	3	0			1			17.327	17.327	2	0.0019056	9986	DP1063-3	142.83	130.62			NaN	NaN	NaN	0	0	Median	6471200	0	6471200	3768	669	3552	7778	17349;17350	17350	778	2	9606
YDEEFQR	0	1	Unmodified	985.41412	0.4141249	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				15.471	15.471	2	0.0094889	6027	DP1063-2	114.02	101.23			NaN	NaN	NaN	0	0	Median	6674700	0	6674700	3769	336	3553	7779	17351;17352	17352		2	9606
YDEMVESMKK	2	0	2 Oxidation (M)	1290.5472	0.54718927	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	2	1	4	0				1		12.767	12.767	3	0.033094	3982	DP1063-4	58.699	44.89			NaN	NaN	NaN	0	0	Median	1063000	0	1063000	3770	371	3554	7780	17353;17354	17354	465;466	2	9606
YDGIILPGK	1	0	Unmodified	974.54368	0.54368251	399	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	18.663	18.663	2	0.0068102	11597	DP1063-5	101.33	65.447			1.7676	1.4963	NaN	1	0	Median	40188000	15704000	24485000	3771	399	3555	7781	17355;17356;17357;17358	17356		4	9606
YDGQVAVFGSDLQEK	1	0	Unmodified	1654.7839	0.7838658	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				19.549	19.549	2	0.0026578	11537	DP1063-2	109.15	66.428			NaN	NaN	NaN	0	0	Median	16248000	0	16248000	3772	195	3556	7782	17359;17360	17360		2	9606
YDLDFKSPDDPSR	1	1	Unmodified	1553.6998	0.69980182	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	1	4	0				1		17.949	17.949	2	0.029453	10418	DP1063-4	111.94	75.555			NaN	NaN	NaN	0	0	Median	3019100	0	3019100	3773	123	3557	7783	17361	17361		1	9606
YDSAPATDGSGTALGWTVAWK	1	0	Unmodified	2153.0065	0.006548526	32	CON__Streptavidin			yes	yes	0	0	0	4.62	1.08	1			1	11	31.68	31.68	2;3	1.1625E-13	18553	DP1063-5	139.11	100.97		+	NaN	NaN	NaN	0	0	Median	47353000	47353000	0	3774	32	3558	7784;7785;7786;7787;7788;7789;7790;7791;7792;7793;7794;7795;7796	17362;17363;17364;17365;17366;17367;17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379	17378		18	
YDSAPATDGSGTALGWTVAWKNNYR	1	1	Unmodified	2700.2568	0.25684299	32	CON__Streptavidin			yes	yes	0	0	1	5	0					1	20.848	20.848	2	3.2271E-24	14418	DP1063-5	217.39	181.05		+	NaN	NaN	NaN	0	0	Median	5991000	5991000	0	3775	32	3559	7797	17380;17381;17382	17381		3	
YDYNSGEELESYK	1	0	Unmodified	1595.6627	0.66274761	670	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				1		17.939	17.939	2	0.0014927	10417	DP1063-4	116.55	80.603			NaN	NaN	NaN	0	0	Median	2580000	0	2580000	3776	670	3560	7798	17383;17384	17383		2	9606
YEAAGTLVTLSSAPTAIK	1	0	Unmodified	1791.9618	0.96183016	331	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	2	0		1				20.286	20.286	2	0.049466	12509	DP1063-2	72.681	37.267			NaN	NaN	NaN	0	0	Median	0	0	0	3777	331	3561	7799	17385	17385		1	9606
YEDFSNLGTTHLLR	0	1	Unmodified	1664.8158	0.81583463	198	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		19.398	19.398	3	6.4111E-05	12428	DP1063-4	157.56	135.23			1.3736	0.91948	NaN	1	0	Median	17701000	7511000	10190000	3778	198	3562	7800	17386;17387;17388;17389	17387		4	9606
YEEIDNAPEER	0	1	Unmodified	1363.5892	0.58918874	306	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	4	0				1		15.597	15.597	2	1.4193E-06	7349	DP1063-4	160.59	139.21			1.7423	1.0987	NaN	1	0	Median	7222000	2457500	4764400	3779	306	3563	7801	17390;17391;17392;17393;17394	17390		5	9606
YEELQITAGR	0	1	Unmodified	1178.5932	0.5931519	101	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3.33	1.7	1			1	1	17.62	17.62	2	4.5174E-36	7435	DP1063-1	263.55	149.66		+	NaN	NaN	NaN	0	0	Median	97709000	97709000	0	3780	101	3564	7802;7803;7804	17395;17396;17397;17398;17399;17400	17396		6	9606
YEELQQTAGR	0	1	Unmodified	1193.5677	0.56766543	20;30	CON__P13647;P13647;CON__Q922U2;CON__Q5XQN5	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	2.67	1.25	1		1	1		14.964	14.964	2	3.0857E-05	6722	DP1063-3	193.41	146.33		+	NaN	NaN	NaN	0	0	Median	25097000	25097000	0	3781	20;30	3565	7805;7806;7807	17401;17402;17403;17404;17405;17406	17403		6	9606
YEELQSLAGK	1	0	Unmodified	1136.5714	0.57135383	15	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	4	0				1		17.457	17.457	2	0.0043074	9756	DP1063-4	101.9	8.7183		+	NaN	NaN	NaN	0	0	Median	6484800	0	6484800	3782	15	3566	7808	17407;17408	17407		2	9606
YEELQVTVGR	0	1	Unmodified	1192.6088	0.60880197	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	4.5	0.5				1	1	17.768	17.768	2	0.0020285	10202	DP1063-4	116.37	65.765		+	NaN	NaN	NaN	0	0	Median	9420800	9420800	0	3783	22	3567	7809;7810	17409;17410;17411	17410		3	9606
YEGFFGLYR	0	1	Unmodified	1150.5447	0.54474515	647	Q9UJS0;O75746	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	yes	no	0	0	0	3	0			1			21.922	21.922	2	0.012968	16257	DP1063-3	89.296	63.737			2.2352	1.6369	NaN	1	0	Median	12403000	3846500	8556600	3784	647	3568	7811	17412;17413	17413		2	9606
YEIEHCLANK	1	0	Unmodified	1275.5918	0.59177169	8	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	1	0	1					15.544	15.544	2	0.00028554	5154	DP1063-1	131.62	89.426		+	NaN	NaN	NaN	0	0	Median	2221000	2221000	0	3785	8	3569	7812	17414;17415	17415		2	
YEITFTLPPVHR	0	1	Unmodified	1471.7823	0.78234966	615	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					1	20.234	20.234	3	0.024843	13696	DP1063-5	67.08	36.874			NaN	NaN	NaN	0	0	Median	6457600	0	6457600	3786	615	3570	7813	17416	17416		1	9606
YELGRPAANTK	1	1	Unmodified	1218.6357	0.63568542	368	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	14.198	14.198	2	0.032357	6105	DP1063-5	121.5	89.742			NaN	NaN	NaN	0	0	Median	2485000	0	2485000	3787	368	3571	7814	17417;17418	17418		2	9606
YENEVALR	0	1	Unmodified	992.49271	0.49270958	19	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.67	1.25	1		1	1		15.821	15.821	2	0.0045604	7681	DP1063-4	117.16	58.993		+	0.098799	0.078213	NaN	1	0	Median	32056000	31305000	750920	3788	19	3572	7815;7816;7817	17419;17420;17421;17422;17423	17423		5	9606
YESLTDPSK	1	0	Unmodified	1038.487	0.4869555	135;132;529	P08238;Q58FF7;Q58FF6;P07900;Q58FF8	HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2	0		1				15.402	15.402	2	0.037584	6029	DP1063-2	68.371	47.85			2.3571	1.972	NaN	1	0	Median	52851000	17007000	35844000	3789	135;132;529	3573	7818	17424	17424		1	9606
YESLTDPSKLDSGK	2	0	Unmodified	1538.7464	0.74641766	135;132;529	P08238;Q58FF7;P07900;Q58FF8	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2	no	no	0	0	1	2	0		2				16.522	16.522	2;3	0.00076465	7409	DP1063-2	120.6	120.6			2.5261	2.4131	NaN	1	0	Median	77792000	14661000	63131000	3790	135;132;529	3574	7819;7820	17425;17426;17427;17428;17429	17426		5	9606
YESSSYTDQFSR	0	1	Unmodified	1468.6107	0.61065246	450	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1.5	0.5	1	1				17.034	17.034	2	2.7096E-06	8085	DP1063-2	159.83	140.59			NaN	NaN	NaN	0	0	Median	3291500	0	3291500	3791	450	3575	7821;7822	17430;17431;17432	17432		3	9606
YFDPANGK	1	0	Unmodified	910.41848	0.418482	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				15.619	15.619	2	0.055746	6178	DP1063-2	72.138	54.153			2.4414	2.0426	NaN	1	0	Median	18490000	5097700	13393000	3792	165	3576	7823	17433;17434	17433		2	9606
YFLVGAGAIGCELLK	1	0	Unmodified	1609.8538	0.85380004	195	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				23.191	23.191	2	0.017365	16258	DP1063-2	84.718	58.706			NaN	NaN	NaN	0	0	Median	6298500	0	6298500	3793	195	3577	7824	17435;17436	17435		2	9606
YFPTQALNFAFK	1	0	Unmodified	1445.7343	0.73433683	108;159;158	P05141;Q9H0C2;P12235;P12236	SLC25A5;SLC25A31;SLC25A4;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	3.25	1.48	1		1	1	1	22.642	22.642	2	0.0014974	16443	DP1063-4	109.29	109.29			1.6604	1.3118	11.199	3	0	Median	71323000	25248000	46075000	3794	108;158;159	3578	7825;7826;7827;7828	17437;17438;17439;17440;17441;17442;17443;17444	17443		8	9606
YFVEAGAMAVR	0	1	Oxidation (M)	1228.591	0.59104341	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	3	0			1			17.242	17.242	2	0.025228	9893	DP1063-3	83.948	63.644			NaN	NaN	NaN	0	0	Median	28170000	0	28170000	3795	179	3579	7829	17445;17446	17446	228	2	9606
YFVEAGAMAVR	0	1	Unmodified	1212.5961	0.59612879	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			18.813	18.813	2	0.0035834	12056	DP1063-3	108.98	65.731			NaN	NaN	NaN	0	0	Median	5910300	0	5910300	3796	179	3579	7830	17447;17448	17448		2	9606
YGALALQEIFDGIQPK	1	0	Unmodified	1761.9301	0.93013611	336	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				24.179	24.179	2	0.026078	17514	DP1063-2	83.182	43.917			NaN	NaN	NaN	0	0	Median	3186100	0	3186100	3797	336	3580	7831	17449	17449		1	9606
YGDGGSTFQSTTGHCVHMR	0	1	Oxidation (M)	2112.8742	0.87417092	237	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3.5	0.5			1	1		14.36	14.36	3	0.00021254	5952	DP1063-3	79.326	69.746			0.45008	0.3222	57.029	2	0	Median	42803000	31486000	11317000	3798	237	3581	7832;7833	17450;17451;17452;17453;17454;17455	17451	281	6	9606
YGDGGSTFQSTTGHCVHMR	0	1	Unmodified	2096.8793	0.8792563	237	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			1			15.348	15.348	3	3.5087E-05	7316	DP1063-3	137.61	114.98			1.9965	1.5035	NaN	1	0	Median	9032000	3091900	5940100	3799	237	3581	7834	17456;17457;17458	17457		3	9606
YGDSEFTVQSTTGHCVHMR	0	1	Oxidation (M)	2226.9423	0.94225048	327	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	4	0				2		15.513	15.513	3;4	0.00032341	7266	DP1063-4	114.63	99.373			2.006	1.3211	NaN	1	0	Median	20338000	5246700	15091000	3800	327	3582	7835;7836	17459;17460;17461	17460	419	3	9606
YGEPTLR	0	1	Unmodified	834.42357	0.42356738	464	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	2	0		1				15.465	15.465	2	0.054154	5994	DP1063-2	88.029	62.202			NaN	NaN	NaN	0	0	Median	8614700	0	8614700	3801	464	3583	7837	17462	17462		1	9606
YGGDEIPFSPYR	0	1	Unmodified	1399.6408	0.64083038	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					20.159	20.159	2	0.00036155	10508	DP1063-1	147.73	35.437			9.2798	7.3517	NaN	1	0	Median	11909000	908910	11000000	3802	190	3584	7838	17463;17464	17463		2	9606
YGIICMEDLIHEIYTVGK	1	0	Oxidation (M)	2169.0486	0.048613037	182	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	0	4	0				1		22.346	22.346	3	0.022628	16145	DP1063-4	71.558	45.084			NaN	NaN	NaN	0	0	Median	3288200	0	3288200	3803	182	3585	7839	17465	17465	231	1	9606
YGLFPANYVELR	0	1	Unmodified	1440.7402	0.74015049	488	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	2.5	0.5		1	1			22.121	22.121	2	0.0045072	16474	DP1063-3	99.568	55.798			NaN	NaN	NaN	0	0	Median	15412000	0	15412000	3804	488	3586	7840;7841	17466;17467;17468;17469	17468		4	9606
YGQFSGLNPGGR	0	1	Unmodified	1251.5996	0.59963426	365	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		17.662	17.662	2	0.00035459	10008	DP1063-4	130.66	105.1			NaN	NaN	NaN	0	0	Median	26841000	0	26841000	3805	365	3587	7842	17470;17471	17471		2	9606
YGQFSGLNPGGRPITPPR	0	2	Unmodified	1912.9908	0.9907793	365	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4	0				1		17.915	17.915	3	0.0045399	10148	DP1063-4	97.767	76.453			NaN	NaN	NaN	0	0	Median	85797000	0	85797000	3806	365	3588	7843	17472	17472		1	9606
YHTINGHNAEVR	0	1	Unmodified	1409.68	0.68000985	197	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4.5	0.5				1	1	12.985	12.985	3	9.7073E-05	4195	DP1063-4	126.12	98.204			2.6678	1.6874	NaN	1	0	Median	12890000	3266500	9623500	3807	197	3589	7844;7845	17473;17474;17475;17476;17477;17478	17474		6	9606
YHTSQSGDEMTSLSEYVSR	0	1	Oxidation (M)	2191.9328	0.93279124	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2.75	0.829		2	1	1		17.073	17.073	2;3	8.7769E-45	8095	DP1063-2	241.39	233.85			2.7203	2.1601	2.4653	2	0	Median	159350000	42386000	116960000	3808	135	3590	7846;7847;7848;7849	17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489	17484	144	11	9606
YHTSQSGDEMTSLSEYVSR	0	1	Unmodified	2175.9379	0.93787661	135	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				18.701	18.701	2	1.2082E-12	10386	DP1063-2	210.07	179.74			NaN	NaN	NaN	0	0	Median	10221000	0	10221000	3809	135	3590	7850	17490;17491	17490		2	9606
YHTVNGHNCEVR	0	1	Unmodified	1484.6579	0.6578942	141	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4	0				1		12.6	12.6	3	0.0010704	3834	DP1063-4	102.4	65.256			NaN	NaN	NaN	0	0	Median	3479000	0	3479000	3810	141	3591	7851	17492	17492		1	9606
YIASVQGSTPSPR	0	1	Unmodified	1361.6939	0.69392858	314	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1.5	0.5	1	1				15.798	15.798	2	0.00084771	5434	DP1063-1	123.79	58.568			NaN	NaN	NaN	0	0	Median	9117000	0	9117000	3811	314	3592	7852;7853	17493;17494;17495;17496	17494		4	9606
YICDNQDTISSK	1	0	Unmodified	1442.6348	0.63475872	14	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1		15.332	15.332	2	3.2046E-06	4931	DP1063-1	170.47	64.951		+	NaN	NaN	NaN	0	0	Median	324180000	324180000	0	3812	14	3593	7854;7855;7856;7857	17497;17498;17499;17500;17501;17502;17503	17497		7	9606
YICPHAPR	0	1	Unmodified	1012.4913	0.49126979	83	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	5	0					1	13.999	13.999	2	0.022691	5854	DP1063-5	94.163	76.128			NaN	NaN	NaN	0	0	Median	4216500	0	4216500	3813	83	3594	7858	17504	17504		1	9606
YIDQEELNK	1	0	Unmodified	1150.5506	0.55061839	135;132;529	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	3	0.816		1	1	1		15.671	15.671	2	5.9922E-22	6270	DP1063-2	214.25	136.51			2.3874	1.9568	9.3578	2	0	Median	230010000	56761000	173250000	3814	135;132;529	3595	7859;7860;7861	17505;17506;17507;17508;17509;17510;17511;17512;17513	17507		9	9606
YIQELWR	0	1	Unmodified	1006.5236	0.52361577	357	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	19.32	19.32	2	0.027847	12509	DP1063-5	100.07	75.068			1.8989	1.4182	NaN	1	0	Median	22552000	7909000	14643000	3815	357	3596	7862	17514;17515;17516	17515		3	9606
YISFEER	0	1	Unmodified	942.4447	0.44469675	485	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	4	0				1		17.339	17.339	2	0.027281	9588	DP1063-4	107.43	54.793			1.1671	0.81642	NaN	1	0	Median	24998000	11619000	13378000	3816	485	3597	7863	17517;17518	17518		2	9606
YISPDQLADLYK	1	0	Unmodified	1424.7187	0.71874635	123	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3.5	0.5			1	1		21.201	21.201	2	1.9528E-08	14743	DP1063-4	178.54	178.54			2.1625	1.4968	NaN	1	0	Median	74890000	19304000	55585000	3817	123	3598	7864;7865	17519;17520;17521;17522;17523;17524	17524		6	9606
YISSQIERPIR	0	2	Unmodified	1360.7463	0.7462985	76	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	1	0	1					15.987	15.987	3	0.0063561	5671	DP1063-1	77.379	39.141			2.3179	2.1305	NaN	1	0	Median	7500600	2525000	4975700	3818	76	3599	7866	17525	17525		1	9606
YIYDSAFHPDTGEK	1	0	Unmodified	1641.7311	0.73110195	622	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		17.652	17.652	3	0.022512	10049	DP1063-4	69.456	44.134			NaN	NaN	NaN	0	0	Median	4975000	0	4975000	3819	622	3600	7867	17526;17527	17527		2	9606
YKAEDEVQR	1	1	Unmodified	1136.5462	0.54620171	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	1	3	0			2			13.082	13.082	2;3	2.3574E-10	4361	DP1063-3	164.68	164.68			3.1764	2.8809	NaN	1	0	Median	205080000	48422000	156650000	3820	149	3601	7868;7869	17528;17529;17530;17531;17532;17533	17530		6	9606
YKAEDEVQRER	1	2	Unmodified	1421.6899	0.68990583	149	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			13.047	13.047	3	0.0054433	4295	DP1063-3	68.893	48.463			3.2165	3.5533	NaN	1	0	Median	50356000	11738000	38619000	3821	149	3602	7870	17534;17535	17534		2	9606
YLAADKDGNVTCER	1	1	Unmodified	1610.7359	0.73586975	520	Q16658	FSCN1	Fascin	yes	yes	0	0	1	3	0			2			14.621	14.621	2;3	0.0024675	6307	DP1063-3	89.26	72.143			2.9633	2.6877	NaN	1	0	Median	17662000	3602700	14059000	3822	520	3603	7871;7872	17536;17537;17538;17539	17536		4	9606
YLAEFATGNDR	0	1	Unmodified	1255.5833	0.5833155	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				1		17.89	17.89	2	0.0034759	10336	DP1063-4	113.18	67.047			NaN	NaN	NaN	0	0	Median	0	0	0	3823	371	3604	7873	17540	17540		1	9606
YLAEFATGNDRK	1	1	Unmodified	1383.6783	0.67827852	371	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	4	0				2		16.21	16.21	2;3	7.1179E-05	8180	DP1063-4	133.42	87.511			2.8747	2.7949	4.5685	2	0	Median	29351000	7674800	21677000	3824	371	3605	7874;7875	17541;17542;17543;17544;17545	17541		5	9606
YLAEKYEWDVAEAR	1	1	Unmodified	1741.8312	0.83115034	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	2	0		1				18.767	18.767	2	0.0041948	10416	DP1063-2	142.91	100.51			NaN	NaN	NaN	0	0	Median	13321000	0	13321000	3825	165	3606	7876	17546;17547	17546		2	9606
YLAEVAAGDDKK	2	0	Unmodified	1278.6456	0.6455814	404	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	1	4.5	0.5				1	1	14.648	14.648	2	6.2097E-06	6669	DP1063-5	150.35	94.82			2.2365	2.3226	NaN	1	0	Median	11008000	1556100	9451900	3826	404	3607	7877;7878	17548;17549;17550;17551;17552;17553;17554	17553		7	9606
YLAEVACGDDR	0	1	Unmodified	1267.5503	0.55030081	219	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	4	0				1		16.388	16.388	2	0.039304	8461	DP1063-4	76.465	48.723			NaN	NaN	NaN	0	0	Median	0	0	0	3827	219	3608	7879	17555	17555		1	9606
YLDGLTAER	0	1	Unmodified	1036.5189	0.51892433	22	CON__P35908v2;P35908;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.41	1	1	1	1	1	17.683	17.683	2	0.0011534	8998	DP1063-2	116.73	59.262		+	0.2296	0.14148	NaN	1	0	Median	126280000	124720000	1559200	3828	22	3609	7880;7881;7882;7883;7884	17556;17557;17558;17559;17560;17561;17562;17563;17564;17565	17559		10	9606
YLDLHDCYLK	1	0	Unmodified	1338.6278	0.62782285	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			1			18.327	18.327	3	0.00030494	11378	DP1063-3	107.21	107.21			1.2763	1.0248	NaN	1	0	Median	32891000	13209000	19682000	3829	456	3610	7885	17566;17567;17568;17569	17569		4	9606
YLEVVLNTLQQASQAQVDK	1	0	Unmodified	2146.127	0.12699801	495	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				23.025	23.025	2	0.00055839	16062	DP1063-2	137.46	107.77			NaN	NaN	NaN	0	0	Median	0	0	0	3830	495	3611	7886	17570	17570		1	9606
YLHDESGLNRR	0	2	Unmodified	1358.6691	0.66911081	498	Q15019	SEPT2	Septin-2	yes	yes	0	0	1	4	0				1		13.522	13.522	3	0.033022	4803	DP1063-4	61.161	34.012			NaN	NaN	NaN	0	0	Median	9865300	0	9865300	3831	498	3612	7887	17571;17572;17573	17573		3	9606
YLKGDHAGVLK	2	0	Unmodified	1199.6663	0.66625727	520	Q16658	FSCN1	Fascin	yes	yes	0	0	1	3	0			1			13.629	13.629	3	0.020947	5042	DP1063-3	75.387	23.942			NaN	NaN	NaN	0	0	Median	4055000	0	4055000	3832	520	3613	7888	17574	17574		1	9606
YLMEEDEDAYKK	2	0	Oxidation (M)	1548.6654	0.66539015	288	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	1	4	0				2		14.948	14.948	2;3	0.011298	6575	DP1063-4	55.776	55.776			2.3547	2.4454	NaN	1	0	Median	10427000	3297300	7129600	3833	288	3614	7889;7890	17575;17576;17577	17576	345	3	9606
YLNEAAGVAAEEAR	0	1	Unmodified	1462.7052	0.70522155	550	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	1	0	1					17.288	17.288	2	0.0011528	7031	DP1063-1	119.74	76.879			NaN	NaN	NaN	0	0	Median	1795800	0	1795800	3834	550	3615	7891	17578;17579	17579		2	9606
YLSEVASGDNK	1	0	Unmodified	1181.5564	0.55643205	238	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	5	0					1	15.026	15.026	2	0.051615	7192	DP1063-5	72.243	45.859			NaN	NaN	NaN	0	0	Median	6307100	0	6307100	3835	238	3616	7892	17580	17580		1	9606
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Oxidation (M)	2496.2054	0.20538427	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.29	1.03		2	2	2	1	18.303	18.303	2;3	3.4751E-51	9801	DP1063-2	252.37	252.37			1.2277	0.98049	10.274	7	0	Median	497590000	221000000	276590000	3836	595	3617	7893;7894;7895;7896;7897;7898;7899	17581;17582;17583;17584;17585;17586;17587;17588;17589;17590;17591;17592;17593;17594;17595;17596;17597;17598;17599;17600;17601;17602;17603;17604;17605;17606;17607;17608;17609;17610;17611;17612	17584	725	32	9606
YLSSVSSQETQGGPLAPMTGTIEK	1	0	Unmodified	2480.2105	0.21046965	595	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.8	0.748		2	2	1		19.933	19.933	2;3	1.2393E-22	12060	DP1063-2	273.52	273.52			1.1556	0.96666	2.3376	3	0	Plateau	100150000	41354000	58795000	3837	595	3617	7900;7901;7902;7903;7904	17613;17614;17615;17616;17617;17618;17619;17620;17621;17622;17623;17624;17625	17616		13	9606
YLTAEAFGFK	1	0	Unmodified	1145.5757	0.57571092	520	Q16658	FSCN1	Fascin	yes	yes	0	0	0	3	0			1			20.875	20.875	2	0.043265	14853	DP1063-3	101.64	54.069			NaN	NaN	NaN	0	0	Median	0	0	0	3838	520	3618	7905	17626	17626		1	9606
YLTESYGTGQDIDDR	0	1	Unmodified	1731.7588	0.75877326	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2.33	1.25	1	1		1		17.56	17.56	2	2.3859000000000002E-35	8799	DP1063-2	258.48	199.79			NaN	NaN	NaN	0	0	Median	46247000	0	46247000	3839	654	3619	7906;7907;7908	17627;17628;17629;17630;17631	17629		5	9606
YLTESYGTGQDIDDRIVEANPLLEAFGNAK	1	1	Unmodified	3298.5994	0.59936608	654	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		1				23.697	23.697	3	1.3721E-06	16920	DP1063-2	98.533	75.545			NaN	NaN	NaN	0	0	Median	4205700	0	4205700	3840	654	3620	7909	17632;17633	17632		2	9606
YLTLDGFDAMFR	0	1	Oxidation (M)	1463.6755	0.67550132	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	1	0	2	0		1				22.438	22.438	2	0.010538	15350	DP1063-2	74.533	48.595			1.793	1.3168	NaN	1	0	Median	9704100	3285300	6418800	3841	543	3621	7910	17634	17634	677	1	9606
YLTTAVITNK	1	0	Unmodified	1122.6285	0.62847478	348	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	4	0				1		17.23	17.23	2	0.020336	9454	DP1063-4	73.233	46.849			2.052	1.4204	NaN	1	0	Median	7609300	2498700	5110600	3842	348	3622	7911	17635;17636	17636		2	9606
YLTVAAIFR	0	1	Unmodified	1052.6019	0.6018661	480	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	3	0			1			21.854	21.854	2	0.0031649	16106	DP1063-3	113.89	62.317			2.019	1.4718	NaN	1	0	Median	13063000	4478700	8584100	3843	480	3623	7912	17637;17638	17637		2	9606
YLTVAAVFR	0	1	Unmodified	1038.5862	0.58621603	414;129	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	3.75	0.829			2	1	1	20.798	20.798	1;2	1.4801E-10	14771	DP1063-3	170.73	126.11			2.263	1.982	12.313	3	0	Median	409780000	120750000	289030000	3844	129;414	3624	7913;7914;7915;7916	17639;17640;17641;17642;17643;17644;17645;17646;17647;17648;17649	17642		10	9606
YLTVATVFR	0	1	Unmodified	1068.5968	0.59678072	471	Q13509	TUBB3	Tubulin beta-3 chain	no	no	0	0	0	3	0			1			20.477	20.477	2	0.0046069	14342	DP1063-3	107.01	36.74			NaN	NaN	NaN	0	0	Median	8763500	0	8763500	3845	471	3625	7917	17650;17651	17650		2	9606
YLVQDTDEFILPTGANK	1	0	Unmodified	1922.9626	0.96255845	48	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	0	5	0					1	21.268	21.268	2	0.0008658	14971	DP1063-5	111.31	86.617			1.2434	1.0526	NaN	1	0	Median	12303000	5505100	6798300	3846	48	3626	7918	17652;17653;17654;17655	17653		4	9606
YLYEIAR	0	1	Unmodified	926.48617	0.48616764	14	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	2.67	0.943	1	1	3	1		17.998	17.998	2	0.002359	7843	DP1063-1	127.66	0		+	NaN	NaN	NaN	0	0	Median	678360000	678360000	0	3847	14	3627	7919;7920;7921;7922;7923;7924	17656;17657;17658;17659;17660;17661;17662;17663	17657		8	9606
YLYLTPQDYK	1	0	Unmodified	1302.6496	0.64960415	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.27	0.617	9	1	1			22.02	22.02	2	7.7784E-10	9690	DP1063-1	180.87	160.87			1.25	1.0668	13.686	4	0	Median	512310000	224830000	287480000	3848	460	3628	7925;7926;7927;7928;7929;7930;7931;7932;7933;7934;7935	17664;17665;17666;17667;17668;17669;17670;17671;17672;17673;17674;17675;17676;17677;17678;17679;17680;17681;17682;17683;17684	17666		21	9606
YLYLTPQDYKR	1	1	Unmodified	1458.7507	0.75071518	460	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	2	2				18.026	18.026	2;3	0.0001026	7831	DP1063-1	119.53	119.53			1.252	1.1734	6.2693	2	0	Median	167700000	64631000	103070000	3849	460	3629	7936;7937;7938;7939	17685;17686;17687;17688;17689;17690;17691;17692;17693;17694;17695;17696	17688		12	9606
YLYLTPQDYTR	0	1	Unmodified	1431.7034	0.70343063	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.079	20.079	2	0.018499	10485	DP1063-1	78.934	78.934			1.1114	0.87904	NaN	1	0	Median	6531100	2942700	3588300	3850	43	3630	7940	17697;17698;17699	17697		3	9606
YMACCLLYR	0	1	Oxidation (M)	1264.5403	0.54027017	413;605	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	1	0	3.5	0.5			1	1		18.375	18.375	2	0.0055345	11360	DP1063-3	94.262	82.668			2.3202	1.7545	11.059	2	0	Median	176620000	52461000	124160000	3851	413;605	3631	7941;7942	17700;17701;17702;17703;17704;17705	17700	511	6	9606
YMACCLLYR	0	1	Unmodified	1248.5454	0.54535555	413;605	P68363;P68366;A6NHL2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain	no	no	0	0	0	3.5	0.5			1	1		19.265	19.265	2	9.7066E-05	12644	DP1063-3	135.35	118.63			2.2341	1.7926	NaN	1	0	Median	83994000	26435000	57559000	3852	413;605	3631	7943;7944	17706;17707;17708;17709;17710	17709		5	9606
YMDAWNTVSR	0	1	Oxidation (M)	1257.5448	0.5448215	677	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	1	0	5	0					1	17.301	17.301	2	0.0036419	9876	DP1063-5	113.18	74.872			NaN	NaN	NaN	0	0	Median	10848000	0	10848000	3853	677	3632	7945	17711;17712	17712	787	2	9606
YMEVSGNLR	0	1	Oxidation (M)	1083.5019	0.50189405	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	1	0	3	0			1			15.181	15.181	2	0.0077841	7036	DP1063-3	87.181	41.165			1.3262	1.0131	NaN	1	0	Median	41669000	16675000	24994000	3854	456	3633	7946	17713;17714;17715;17716	17714	558	4	9606
YMEVSGNLR	0	1	Unmodified	1067.507	0.50697943	456	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	3	0			1			16.684	16.684	2	0.018834	9059	DP1063-3	92.47	39.834			NaN	NaN	NaN	0	0	Median	9907700	0	9907700	3855	456	3633	7947	17717;17718	17718		2	9606
YMHSGPVVAMVWEGLNVVK	1	0	2 Oxidation (M)	2147.0544	0.054367116	171	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	2	0	5	0					1	20.807	20.807	3	0.037893	14383	DP1063-5	62.916	39.234			NaN	NaN	NaN	0	0	Median	2738000	0	2738000	3856	171	3634	7948	17719	17719	218;219	1	9606
YNEQHVPGSPFTAR	0	1	Unmodified	1601.7587	0.7586541	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					16.557	16.557	3	0.0029012	6232	DP1063-1	92.265	51.892			NaN	NaN	NaN	0	0	Median	31404000	0	31404000	3857	190	3635	7949	17720;17721	17720		2	9606
YNFFTGCPK	1	0	Unmodified	1132.5012	0.50116577	601	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			19.18	19.18	2	0.010574	12509	DP1063-3	93.429	82.503			3.809	3.0586	NaN	1	0	Median	25294000	5968800	19325000	3858	601	3636	7950	17722;17723	17722		2	9606
YNFPVEVEVPMER	0	1	Oxidation (M)	1623.7603	0.76029359	420	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.61	20.61	2	0.013729	11135	DP1063-1	69.672	25.902			1.4376	1.1792	NaN	1	0	Median	3675600	1720500	1955100	3859	420	3637	7951	17724	17724	534	1	9606
YNGEPEHIER	0	1	Unmodified	1242.5629	0.56291441	492	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					13.811	13.811	3	0.052295	3215	DP1063-1	57.348	32.839			NaN	NaN	NaN	0	0	Median	832770	0	832770	3860	492	3638	7952	17725	17725		1	9606
YNGVFQECCQAEDK	1	0	Unmodified	1746.6978	0.69776968	14	CON__P02769			yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.985	16.985	2	1.6486E-11	9415	DP1063-3	208.17	189.22		+	NaN	NaN	NaN	0	0	Median	234430000	234430000	0	3861	14	3639	7953;7954;7955;7956	17726;17727;17728;17729;17730;17731;17732;17733;17734;17735;17736	17731		11	9606
YNGVFQECCQAEDKGACLLPK	2	0	Unmodified	2486.1029	0.10285023	14	CON__P02769			yes	yes	0	0	1	2	1	1		1			18.985	18.985	2;3	9.9588E-05	12198	DP1063-3	171.26	137.25		+	NaN	NaN	NaN	0	0	Median	14901000	14901000	0	3862	14	3640	7957;7958	17737;17738;17739	17738		3	9606
YNPTWHCIVGR	0	1	Unmodified	1401.6612	0.66118866	405	P63167;Q96FJ2	DYNLL1;DYNLL2	Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic	yes	no	0	0	0	5	0					1	17.572	17.572	3	0.00048177	10194	DP1063-5	99.53	76.81			8.8419	6.6036	NaN	1	0	Median	35608000	3964200	31644000	3863	405	3641	7959	17740;17741;17742	17740		3	9606
YNYTSEEK	1	0	Unmodified	1032.44	0.4400053	543;581	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	2	0		1				14.083	14.083	2	0.040836	4234	DP1063-2	78.77	70.351			1.2791	1.0701	NaN	1	0	Median	8511400	4318500	4193000	3864	543;581	3642	7960	17743;17744	17743		2	9606
YPASTVQILGAEK	1	0	Unmodified	1375.7347	0.73473076	41	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			18.464	18.464	2	0.024766	11581	DP1063-3	69.979	32.635			1.7494	1.4047	NaN	1	0	Median	11696000	4266200	7429700	3865	41	3643	7961	17745;17746	17746		2	9606
YPENFFLLR	0	1	Unmodified	1197.6182	0.61824444	365;260;366	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		22.192	22.192	2	0.0033715	16716	DP1063-3	111.82	56.704			NaN	NaN	NaN	0	0	Median	106800000	0	106800000	3866	260;365;366	3644	7962;7963	17747;17748;17749;17750;17751	17749		5	9606
YPIEHGIITNWDDMEK	1	0	Oxidation (M)	1975.8986	0.89857798	411	P68133;P68032;P63267;P62736	ACTA1;ACTC1;ACTG2;ACTA2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	1	0	4	0				1		18.616	18.616	3	0.00042945	11301	DP1063-4	78.902	64.902			2.6954	1.8657	NaN	1	0	Median	98818000	23012000	75806000	3867	411	3645	7964	17752;17753	17752	503	2	9606
YPIEHGIITNWDDMEK	1	0	Unmodified	1959.9037	0.90366336	411	P68133;P68032;P63267;P62736	ACTA1;ACTC1;ACTG2;ACTA2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	0	0	4	0				2		19.642	19.642	2;3	0.00023029	12720	DP1063-4	96.247	96.247			1.8289	1.2659	50.811	2	0	Median	56945000	16994000	39950000	3868	411	3645	7965;7966	17754;17755;17756;17757;17758;17759;17760	17755		7	9606
YPIEHGIITNWDDMEKIWHHTFYNELR	1	1	Oxidation (M)	3472.6299	0.62989512	411	P68133;P68032	ACTA1;ACTC1	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	yes	no	0	1	1	4	0				1		20.747	20.747	5	0.028864	14261	DP1063-4	47.745	22.019			NaN	NaN	NaN	0	0	Median	5308600	0	5308600	3869	411	3646	7967	17761	17761	503	1	9606
YPQLLPGIR	0	1	Unmodified	1055.6128	0.61276513	201	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	4	0				1		20.274	20.274	2	0.0059047	13537	DP1063-4	104.45	66.72			2.1807	1.3416	NaN	1	0	Median	9143700	2997200	6146500	3870	201	3647	7968	17762;17763;17764;17765	17764		4	9606
YPTVHEIEVIGGYLALQK	1	0	Unmodified	2029.0884	0.088427662	524	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.75	0.829		2	1	1		22.602	22.602	2;3	5.8564E-07	15351	DP1063-2	180.84	148.11			NaN	NaN	NaN	0	0	Median	153160000	0	153160000	3871	524	3648	7969;7970;7971;7972	17766;17767;17768;17769;17770;17771;17772;17773;17774	17768		9	9606
YPVNSVNILK	1	0	Unmodified	1145.6445	0.64445919	179	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			18.536	18.536	2	0.00043419	11614	DP1063-3	122.33	98.806			3.9009	3.1324	NaN	1	0	Median	38498000	7680000	30818000	3872	179	3649	7973	17775;17776	17776		2	9606
YQAVTATLEEK	1	0	Unmodified	1251.6347	0.63468237	269	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	5	0					1	16.791	16.791	2	0.0038458	9201	DP1063-5	105.98	78.86			NaN	NaN	NaN	0	0	Median	21680000	0	21680000	3873	269	3650	7974	17777	17777		1	9606
YQEQGGEASPQR	0	1	Unmodified	1348.6008	0.60075648	649	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	3	0			1			13.074	13.074	2	3.1304E-05	4314	DP1063-3	140.49	109.92			NaN	NaN	NaN	0	0	Median	2574900	0	2574900	3874	649	3651	7975	17778;17779	17778		2	9606
YQETFNVIER	0	1	Unmodified	1297.6303	0.63026569	459	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		18.483	18.483	2	0.049561	11154	DP1063-4	77.192	44.777			NaN	NaN	NaN	0	0	Median	0	0	0	3875	459	3652	7976	17780	17780		1	9606
YQILPLHSQIPR	0	1	Unmodified	1463.8249	0.82488317	452	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				18.476	18.476	3	0.0074366	10122	DP1063-2	62.088	62.088			1.4458	1.0517	NaN	1	0	Median	13226000	5332700	7893400	3876	452	3653	7977	17781;17782;17783	17782		3	9606
YQLDPTASISAK	1	0	Unmodified	1292.6612	0.66123147	283	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		18.013	18.013	2	0.027462	10512	DP1063-4	80.737	43.188			NaN	NaN	NaN	0	0	Median	6857400	0	6857400	3877	283	3654	7978	17784;17785	17784		2	9606
YRPGTVALR	0	2	Unmodified	1031.5876	0.58761301	416;533	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	1	5	0					2	14.771	14.771	2;3	0.0029522	6822	DP1063-5	101.65	67.46			1.477	1.2568	NaN	1	0	Median	486080000	188350000	297730000	3878	416;533	3655	7979;7980	17786;17787;17788;17789;17790;17791;17792	17791		7	9606
YSGLCPHVVVLVATVR	0	1	Unmodified	1768.9658	0.96581011	155	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	2	0		1				20.019	20.019	3	0.041232	12143	DP1063-2	68.978	46.372			NaN	NaN	NaN	0	0	Median	0	0	0	3879	155	3656	7981	17793	17793		1	9606
YSGSYNDYLR	0	1	Unmodified	1236.5411	0.54111633	591	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3.5	0.5			1	1		17.717	17.717	2	0.00011753	10500	DP1063-3	128.36	107.74			1.9115	1.3934	NaN	1	0	Median	26838000	7933400	18905000	3880	591	3657	7982;7983	17794;17795;17796;17797	17795		4	9606
YSGTLNLDR	0	1	Unmodified	1037.5142	0.5141733	303	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				16.797	16.797	2	0.0060181	6453	DP1063-1	104.06	73.89			3.0368	2.487	NaN	1	0	Median	19124000	4286400	14838000	3881	303	3658	7984;7985	17798;17799;17800;17801	17798		4	9606
YSHVQEVQER	0	1	Unmodified	1273.6051	0.60511357	574	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	1	0	1					13.212	13.212	3	0.00069548	2567	DP1063-1	96.113	58.769			2.7396	2.38	NaN	1	0	Median	1820000	491540	1328400	3882	574	3659	7986	17802	17802		1	9606
YSLDPENPTK	1	0	Unmodified	1162.5506	0.55061839	184	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	17.023	17.023	2	0.0028149	9426	DP1063-5	101.65	78.865			1.8095	1.5317	NaN	1	0	Median	22261000	8342600	13919000	3883	184	3660	7987	17803;17804	17803		2	9606
YSLQYYMGLAEELVR	0	1	Oxidation (M)	1849.892	0.89203604	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.33	0.471		2	1			23.724	23.724	2;3	7.3087E-09	16913	DP1063-2	182.41	182.41			1.4758	1.1276	0.35442	2	0	Median	99111000	38871000	60240000	3884	154	3661	7988;7989;7990	17805;17806;17807;17808;17809;17810;17811;17812	17805	191	8	9606
YSLQYYMGLAEELVR	0	1	Unmodified	1833.8971	0.89712142	154	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				25.948	25.948	2	0.0041623	19575	DP1063-2	98.942	61.615			NaN	NaN	NaN	0	0	Median	0	0	0	3885	154	3661	7991;7992	17813;17814	17814		2	9606
YSNSEVVTGSGR	0	1	Unmodified	1254.584	0.58404378	543	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	2	0		1				14.497	14.497	2	0.00047711	4734	DP1063-2	136.96	98.183			1.3374	0.97038	NaN	1	0	Median	15225000	7023200	8201800	3886	543	3662	7993	17815;17816;17817;17818	17817		4	9606
YSQVLANGLDNK	1	0	Unmodified	1320.6674	0.66737948	374	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	17.069	17.069	2	0.0008781	9556	DP1063-5	114.89	114.89			1.478	1.2511	NaN	1	0	Median	36229000	14311000	21918000	3887	374	3663	7994	17819	17819		1	9606
YSSAGTVEFLVDSK	1	0	Unmodified	1501.73	0.73003931	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.25	0.829		1	1	2		20.175	20.175	2	7.1666E-09	13877	DP1063-3	189.57	135.51			1.3567	1.112	3.7147	2	0	Median	246570000	98351000	148220000	3888	110	3664	7995;7996;7997;7998	17820;17821;17822;17823;17824;17825;17826;17827;17828	17823		9	9606
YSSAGTVEFLVDSKK	2	0	Unmodified	1629.825	0.82500233	110	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.67	0.471		1	2			18.583	18.583	2;3	7.6368E-06	11688	DP1063-3	164.48	144.18			1.1273	1.0115	13.187	3	0	Median	154570000	72957000	81608000	3889	110	3665	7999;8000;8001	17829;17830;17831;17832;17833;17834;17835;17836	17835		8	9606
YSTSGSSGLTTGK	1	0	Unmodified	1244.5885	0.58846046	522	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	2	0		1				14.359	14.359	2	0.033166	4557	DP1063-2	79.201	49.392			NaN	NaN	NaN	0	0	Median	4040100	0	4040100	3890	522	3666	8002	17837	17837		1	9606
YSVDIPLDK	1	0	Unmodified	1048.5441	0.54407645	358	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	18.831	18.831	2	0.023461	11842	DP1063-5	78.113	15.567			1.5072	1.2758	NaN	1	0	Median	26197000	10885000	15312000	3891	358	3667	8003	17838;17839	17839		2	9606
YTAAVPYR	0	1	Unmodified	939.48142	0.48141661	642	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	4	0				1		15.937	15.937	2	0.013081	7857	DP1063-4	106.42	79.295			1.4221	0.92107	NaN	1	0	Median	13675000	5385700	8289300	3892	642	3668	8004	17840;17841;17842	17842		3	9606
YTEFYHVPTHSDASK	1	0	Unmodified	1780.8057	0.80566387	582	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	3	0			1			15.79	15.79	3	0.0199	7891	DP1063-3	72.523	56.35			NaN	NaN	NaN	0	0	Median	14641000	0	14641000	3893	582	3669	8005	17843;17844	17843		2	9606
YTHAANTVVYSSNK	1	0	Unmodified	1553.7474	0.74742071	538	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				3		13.944	13.944	2;3	0.0030904	5237	DP1063-4	91.307	66.807			NaN	NaN	NaN	0	0	Median	5751200	0	5751200	3894	538	3670	8006;8007;8008	17845;17846;17847;17848	17846		4	9606
YTPSGQAGAAASESLFVSNHAY	0	0	Unmodified	2227.0182	0.018175845	98	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		19.922	19.922	2	3.5786E-14	13098	DP1063-4	196.97	177.77			NaN	NaN	NaN	0	0	Median	0	0	0	3895	98	3671	8009	17849;17850;17851	17850		3	9606
YTPVQQGPVGVNVTYGGDPIPK	1	0	Unmodified	2285.1692	0.16919718	190	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					19.721	19.721	2	0.00010635	10025	DP1063-1	139.34	110.28			NaN	NaN	NaN	0	0	Median	8648200	0	8648200	3896	190	3672	8010	17852;17853	17853		2	9606
YTVQDESHSEWVSCVR	0	1	Unmodified	1980.8636	0.86358946	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				2		17.62	17.62	2;3	1.8894E-11	9986	DP1063-4	208.27	178.13			2.318	1.5761	NaN	1	0	Median	25800000	5342600	20457000	3897	408	3673	8011;8012	17854;17855;17856;17857;17858;17859	17859		6	9606
YVASYLLAALGGNSSPSAK	1	0	Unmodified	1867.968	0.96797818	114	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	22.701	22.701	2	0.00030154	16635	DP1063-5	98.654	98.654			1.4374	1.2167	NaN	1	0	Median	7434100	3082100	4352000	3898	114	3674	8013	17860;17861;17862;17863	17860		4	9606
YVATLGVEVHPLVFHTNR	0	1	Unmodified	2051.0952	0.095244374	387	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					2	19.127	19.127	3;4	5.7715E-05	12317	DP1063-5	95.428	95.428			1.7043	1.2729	15.451	2	0	Median	28339000	10093000	18245000	3899	387	3675	8014;8015	17864;17865;17866;17867	17867		4	9606
YVDIAIPCNNK	1	0	Unmodified	1305.6387	0.63872189	0	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		18.129	18.129	2	0.0089185	10631	DP1063-4	87.308	70.676			2.6499	1.8342	NaN	1	0	Median	10970000	2566900	8403000	3900	0	3676	8016	17868;17869	17868		2	9606
YVELFLNSTAGASGGAYEHR	0	1	Unmodified	2141.0178	0.017781914	237	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3.25	0.433			3	1		19.504	19.504	2;3	6.1502E-17	12968	DP1063-3	240.46	220.03			1.7426	1.3207	27.079	3	0	Median	69746000	29503000	40242000	3901	237	3677	8017;8018;8019;8020	17870;17871;17872;17873;17874;17875;17876;17877;17878;17879	17872		10	9606
YVEPIEDVPCGNIVGLVGVDQFLVK	1	0	Unmodified	2758.4252	0.42515387	165	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	0		1				24.947	24.947	3	0.00033122	18440	DP1063-2	64.028	64.028			2.1071	1.7628	NaN	1	0	Median	3208800	1094400	2114400	3902	165	3678	8021	17880;17881;17882	17881		3	9606
YVIYIER	0	1	Unmodified	954.51747	0.51746776	356	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	18.372	18.372	2	0.030683	11233	DP1063-5	97.473	71.364			1.8272	1.3646	NaN	1	0	Median	35516000	11727000	23789000	3903	356	3679	8022	17883	17883		1	9606
YVSFEDR	0	1	Unmodified	914.4134	0.41339662	477	Q13643	FHL3	Four and a half LIM domains protein 3	yes	yes	0	0	0	4	0				1		16.376	16.376	2	0.055218	8444	DP1063-4	88.029	62.202			1.0218	0.71504	NaN	1	0	Median	25070000	13005000	12066000	3904	477	3680	8023	17884	17884		1	9606
YVVTSVSWWSHK	1	0	Unmodified	1477.7354	0.73539946	340	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	0		1				19.588	19.588	3	0.0053647	11602	DP1063-2	84.188	55.125			NaN	NaN	NaN	0	0	Median	8837700	0	8837700	3905	340	3681	8024	17885	17885		1	9606
YVVVTGITPTPLGEGK	1	0	Unmodified	1629.8978	0.89777334	155	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	2	0		1				19.907	19.907	2	0.0014722	12009	DP1063-2	108.68	94.403			2.0228	1.6923	NaN	1	0	Median	14304000	5410700	8893700	3906	155	3682	8025	17886;17887	17886		2	9606
YWLCAATGPSIK	1	0	Unmodified	1365.6751	0.67510739	408	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		19.754	19.754	2	0.0079398	12942	DP1063-4	93.556	64.848			NaN	NaN	NaN	0	0	Median	5644100	0	5644100	3907	408	3683	8026	17888;17889	17889		2	9606
YYPTEDVPR	0	1	Unmodified	1138.5295	0.52948901	439	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.63	16.63	2	0.040663	8682	DP1063-4	82.452	52.198			NaN	NaN	NaN	0	0	Median	14365000	0	14365000	3908	439	3684	8027	17890	17890		1	9606
YYTSASGDEMVSLK	1	0	Oxidation (M)	1565.6919	0.69193925	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	1	0	2	0		1				16.87	16.87	2	0.0042444	7827	DP1063-2	105.17	56.73			NaN	NaN	NaN	0	0	Median	15784000	0	15784000	3909	132	3685	8028	17891;17892	17892	135	2	9606
YYVTIIDAPGHR	0	1	Unmodified	1403.7197	0.7197494	412	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	3	1.41	2		2	2	1	18.075	18.075	2;3	1.941E-05	10530	DP1063-4	115.29	115.29			2.1503	1.7578	26.6	5	0	Median	263350000	70322000	193030000	3910	412	3686	8029;8030;8031;8032;8033;8034;8035	17893;17894;17895;17896;17897;17898;17899;17900;17901;17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912;17913	17909		21	9606
