Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Intensity	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAVAAAGAGEPQSPDELLPK	Acetyl (Protein N-term)	2004.0164	0.016384931	447	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	1	0	0	5	0					1	21.259	21.259	2	1.211E-43	16254	DP1141_5	189.3	148.92			13461000	0	447	0	0	0;1	0		2	9606
AADIDQEVKER	Unmodified	1272.631	0.63099397	358	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	2	0		1				14.62	14.62	3	0.014662	5623	DP1141_2	93.345	59.804			9047000	1	358	1	1	2	2		1	9606
AADPPAENSSAPEAEQGGAE	Unmodified	1896.7973	0.79734361	255	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.391	15.391	2	1.188E-13	7597	DP1141_4	100.18	87.623			33005000	2	255	2	2	3	3		0	9606
AAECNIVVTQPR	Unmodified	1356.682	0.68198369	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					16.205	16.205	2	0.027254	7649	DP1141_1	106.29	48.692			26652000	3	288	3	3	4	4		0	9606
AAGTAAALAFLSQESR	Acetyl (Protein N-term)	1604.8158	0.81583463	54	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	5	0					1	24.148	24.148	2	0	20426	DP1141_5	466.38	379.48			400790000	4	54	4	4	5;6	5		2	9606
AAGVEAAAEVAATEIK	Acetyl (Protein N-term)	1541.7937	0.7937022	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	4	0.816			1	1	1	23.176	23.176	2	0	18480	DP1141_3	276.35	216.19			38237000	5	204	5	5;6;7	7;8;9;10	7		4	9606
AAGVNVEPFWPGLFAK	Unmodified	1701.8879	0.88787736	74	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	23.037	23.037	2	1.1282E-15	18897	DP1141_5	154.15	137.57			252820000	6	74	6	8	11;12	11		2	9606
AAHSEGNTTAGLDMR	Unmodified	1529.6893	0.68925391	262	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			14.864	14.864	3	0.00081955	5557	DP1141_3	113.53	77.082			0	7	262	7	9	13	13		1	9606
AAIDWFDGK	Unmodified	1021.4869	0.48689592	161	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	yes	no	0	0	0	3.5	0.5			1	1		20.304	20.304	2	0.00014335	15240	DP1141_4	155	44.686			67105000	8	161	8	10;11	14;15	15		2	9606
AAIDWFDGKEFSGNPIK	Unmodified	1893.9261	0.92611336	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	4	1			1		1	20.888	20.888	2	1.9964000000000002E-45	15556	DP1141_5	171.99	127.45			73818000	9	161	9	12;13	16;17	17		2	9606
AALGVAEAVAAPHPAEGAETAEAVELSR	Acetyl (Protein N-term)	2728.3668	0.36678737	360	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	1	0	0	2	0		1				21.454	21.454	3	0.0042419	16058	DP1141_2	62.677	38.327			0	10	360	10	14	18	18		1	9606
AALVLEDGSVLR	Acetyl (Protein N-term)	1283.7085	0.70851601	140	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	1	0	0	1	0	1					23.393	23.393	2	1.389E-08	18965	DP1141_1	153.05	47.525			18211000	11	140	11	15	19	19		1	9606
AAPEEPQQRPPEAVAAAPAGTTSSR	Unmodified	2488.2306	0.23062824	392	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	4	1			1		1	15.51	15.51	3	0.0012285	6746	DP1141_3	81.808	60.209			24786000	12	392	12	16;17	20;21;22	21		3	9606
AAPGAEFAPNKR	Unmodified	1227.636	0.63601977	325	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	3.5	0.5			1	1		14.707	14.707	3	0.0052712	5207	DP1141_3	117.25	89.823			28937000	13	325	13	18;19	23;24	23		0	9606
AAQAGPTQPGPPR	Unmodified	1246.6418	0.64183343	416	Q9BUL5	PHF23	PHD finger protein 23	yes	yes	0	0	0	3	0			1			14.158	14.158	2	3.9217E-16	4461	DP1141_3	166.34	123.47			5302400	14	416	14	20	25;26	25		2	9606
AASADSTTEGTPADGFTVLSTK	Unmodified	2126.0015	0.0015227276	50	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		18.996	18.996	2	9.7211E-09	13407	DP1141_4	148.57	126.5			187850000	15	50	15	21	27	27		1	9606
AASVHTVGEDTEETPHR	Unmodified	1834.8446	0.84456858	403	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	1.5	0.5	1	1				14.016	14.016	4	0.00064881	4537	DP1141_2	62.69	40.215			6196000	16	403	16	22;23	28;29	29		1	9606
AATASAGAGGIDGKPR	Acetyl (Protein N-term)	1440.7321	0.732105	278	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	3.33	1.7	1			1	1	15.415	15.415	2	0	7390	DP1141_4	264.3	183.39			99059000	17	278	17	24;25;26	30;31;32;33;34;35;36	32		7	9606
AATGEEVSAEDLGGADLHCR	Unmodified	2056.912	0.91199621	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.299	17.299	3	6.2398E-137	9491	DP1141_3	208.85	189.69			1389500000	18	436	18	27;28	37;38;39	37		3	9606
AAVENLPTFLVELSR	Unmodified	1657.9039	0.90392136	321	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	3	1		1		1		23.456	23.456	2	7.2277E-78	19044	DP1141_2	193.73	138.27			23925000	19	321	19	29;30	40;41;42	40		3	9606
ACQSIYPLHDVFVR	Unmodified	1703.8454	0.84536062	220	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		19.496	19.496	3	0.031958	13988	DP1141_4	79.466	39.442			144450000	20	220	20	31	43	43		1	9606
ACTELGIR	Unmodified	918.4593	0.45930096	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				16.124	16.124	2	5.7316E-05	7814	DP1141_2	148.21	28.649			222320000	21	101	21	32;33	44;45	45		2	9606
ADEAYLIGR	Unmodified	1006.5084	0.50835964	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					17.83	17.83	2	1.8269E-109	10456	DP1141_1	231.87	152.75			0	22	101	22	34	46	46		1	9606
ADFAQACQDAGVR	Unmodified	1407.6201	0.62011171	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					16.749	16.749	2	1.3125E-55	8690	DP1141_1	189.57	159			483180000	23	101	23	35	47	47		1	9606
ADGELNVDSLITR	Acetyl (Protein N-term)	1443.7205	0.72053726	226	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	4	0				1		22.296	22.296	2	6.0085E-05	18021	DP1141_4	113.63	66.442			68244000	24	226	24	36	48;49	48		2	9606
ADKDYHFKVDNDENEHQLSLR	Unmodified	2572.1942	0.19424273	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4.5	0.5				3	3	16.424	16.424	2;3;4;5	8.7387E-182	9219	DP1141_4	227.36	188.96			6162499999.999999	25	80	25	37;38;39;40;41;42	50;51;52;53;54;55;56;57;58;59;60;61;62;63;64	56		15	9606
ADLDKLNIDSIIQR	Acetyl (Protein N-term)	1654.889	0.88899957	164	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	4	0				1		21.998	21.998	2	3.422E-11	17845	DP1141_4	150.51	104.85			795130000	26	164	26	43	65;66	65		2	9606
ADLEMQIESLTEELAYLKK	Oxidation (M)	2239.1294	0.12936578	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	1	3	1		1		1		23.78	23.78	3	1.5617E-13	19615	DP1141_2	145.43	118.59		+	29411000	27	12	27	44;45	67;68;69;70	67	6	4	9606
ADRDESSPYAAMLAAQDVAQR	Oxidation (M)	2280.0441	0.044073019	231	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	1	5	0					1	17.751	17.751	3	6.0126E-05	10652	DP1141_5	119.87	98.008			0	28	231	28	46	71	71	197	1	9606
ADVFHAYLSLLK	Unmodified	1375.75	0.7499869	358	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				22.288	22.288	2	0.00064119	17276	DP1141_2	147.3	33.858			0	29	358	29	47	72	72		1	9606
AEAALLLLPEAAAER	Acetyl (Protein N-term)	1578.8617	0.86172219	391	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	1	0	0	2	0		1				25.155	25.155	2	0.001792	21515	DP1141_2	98.353	63.853			1873000	30	391	30	48	73	73		1	9606
AEAEAQAEELSFPR	Unmodified	1546.7264	0.72635092	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	1.79	2			1	1	18.562	18.562	2;3	9.728299999999999E-285	12614	DP1141_4	259.18	197.59			370600000	31	101	31	49;50;51;52	74;75;76;77;78;79;80;81	79		8	9606
AEDGATPSPSNETPK	Unmodified	1499.674	0.673981	144	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	3	0			1			14.125	14.125	2	0.0054299	4521	DP1141_3	83.182	51.46			1889900	32	144	32	53	82	82		1	9606
AEDKEWMPVTK	Oxidation (M)	1348.6333	0.63330216	109	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	1	1	4	0				1		15.201	15.201	3	0.010638	7203	DP1141_4	110.31	80.501			154640000	33	109	33	54	83	83	128	1	9606
AEDKEWMPVTK	Unmodified	1332.6384	0.63838754	109	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	4	0				1		16.553	16.553	3	0.015643	9327	DP1141_4	84.605	62.577			27905000	34	109	33	55	84	84		1	9606
AEEGIAAGGVMDVNTALQEVLK	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	135	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	5	0					1	24.695	24.695	2	2.6940000000000003E-56	21129	DP1141_5	173.03	156.68			4421000	35	135	34	56	85;86	85	143	2	9606
AEFEDQDDEAR	Unmodified	1323.5215	0.5215031	318	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					15.198	15.198	2	9.7813E-27	6081	DP1141_1	187.22	153.95			0	36	318	35	57	87	87		1	9606
AEFVEVTK	Unmodified	921.48075	0.48074791	9	CON__P02769			yes	yes	0	0	0	5	0					1	16.267	16.267	2	1.0831E-42	8175	DP1141_5	188.81	96.345		+	222920000	37	9	36	58	88;89;90	89		3	9606
AEFVEVTKLVTDLTK	Unmodified	1691.9346	0.93455278	9	CON__P02769			yes	yes	0	0	1	5	0					1	22	22	3	0.019361	17153	DP1141_5	81.185	52.545		+	4702500	38	9	37	59	91	91		0	9606
AEPASVAAESLAGSR	Acetyl (Protein N-term)	1456.7158	0.71578623	441	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	1	0	0	4.5	0.5				1	1	19.94	19.94	2	2.0526000000000002E-55	14734	DP1141_4	174.42	128.42			27651000	39	441	38	60;61	92;93	92		1	9606
AEPVEVVAPR	Unmodified	1065.5819	0.58185893	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0.816	1	1	1			16.32	16.32	2	5.7033E-111	8151	DP1141_2	219.56	181.84			1061199999.9999999	40	89	39	62;63;64	94;95;96;97;98;99	96		6	9606
AEPYCSVLPGFTFIQHLPLSER	Unmodified	2560.2784	0.27843005	415	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				22.967	22.967	3	1.6672E-09	18286	DP1141_2	124.94	96.88			82080000	41	415	40	65	100;101;102	101		3	9606
AESDFVKFDTPFLPK	Unmodified	1739.877	0.8770379	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				20.9	20.9	3	0.021501	15281	DP1141_2	78.615	53.287			43751000	42	316	41	66	103	103		1	9606
AESSDKLYR	Acetyl (Protein N-term)	1109.5353	0.53530267	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	1	5	0					2	15.724	15.724	2	1.5695E-38	7283	DP1141_5	199.7	96.931			0	43	89	42	67;68	104;105	105		2	9606
AESTLQNSSSAVHTESNK	Unmodified	1888.8763	0.87626263	433	Q9H967	WDR76	WD repeat-containing protein 76	yes	yes	0	0	0	3	0			1			14.026	14.026	3	0.002551	4321	DP1141_3	116.04	85.167			0	44	433	43	69	106	106		1	9606
AEVQVLVLDGR	Acetyl (Protein N-term)	1239.6823	0.68230126	173	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	5	0					1	22.579	22.579	2	0.030325	18103	DP1141_5	80.706	33.103			0	45	173	44	70	107	107		1	9606
AFGYYGPLR	Unmodified	1042.5236	0.52361577	269	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	5	0					1	19.211	19.211	2	0.0091005	13015	DP1141_5	122.79	90.18			27627000	46	269	45	71	108	108		1	9606
AFHNEAQVNPER	Unmodified	1410.664	0.66402543	118	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	2	1	1		1			14.299	14.299	3	2.9618E-05	4797	DP1141_3	128.85	103.15			9333900	47	118	46	72;73	109;110;111	111		3	9606
AFITNIPFDVK	Unmodified	1263.6863	0.68632401	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			21.21	21.21	2	0.0052607	15473	DP1141_3	135.43	97.617			0	48	204	47	74	112	112		1	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	Unmodified	2751.4596	0.45956554	76	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				2		21.798	21.798	2;3	0	17437	DP1141_4	263.16	248.1			454880000	49	76	48	75;76	113;114	113		2	9606
AFLIEEQK	Unmodified	976.52295	0.52294707	190	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	17.698	17.698	2	2.2546999999999997E-22	10667	DP1141_5	172.03	124.37			74463000	50	190	49	77	115	115		1	9606
AFSSPQEEEEAGFTGR	Unmodified	1740.7591	0.75910761	315	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	3	0			1			17.891	17.891	2	0.00010099	10387	DP1141_3	168.02	125.27			0	51	315	50	78	116	116		1	9606
AFVDFLSDEIKEER	Unmodified	1696.8308	0.83081599	285	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	5	0					1	21.136	21.136	3	0.027723	16139	DP1141_5	63.29	24.845			75759000	52	285	51	79	117	117		1	9606
AFYGDTLVTGFAR	Unmodified	1416.7038	0.70376498	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.905	20.905	2	0.00040962	15102	DP1141_3	147.73	92.75			1660299999.9999998	53	436	52	80	118	118		1	9606
AFYPEEISSMVLTK	Oxidation (M)	1629.796	0.79601039	93	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	1	0	3.6	0.8			3	1	1	20.324	20.324	2;3	0.0027439	14157	DP1141_3	149.82	107.44			334180000	54	93	53	81;82;83;84;85	119;120;121;122;123;124;125	121	99	7	9606
AFYPEEISSMVLTK	Unmodified	1613.8011	0.80109577	93	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	0	0	3	0			1			21.707	21.707	2	0.0029578	16364	DP1141_3	112.13	72.067			123970000	55	93	53	86	126;127	126		2	9606
AGAAGGPEEEAEKPVK	Unmodified	1538.7577	0.75765105	377	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					2	13.86	13.86	2	6.2169E-07	4255	DP1141_5	128.08	86.654			0	56	377	54	87;88	128;129	128		2	9606
AGLESGAEPGDGDSDTTKK	Unmodified	1833.8228	0.82283008	48	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	1	1	0	1					14.092	14.092	3	0.0020136	4372	DP1141_1	88.637	72.647			2369600	57	48	55	89	130	130		1	9606
AGLQFPVGR	Unmodified	943.52395	0.52395013	91;69;110;90	Q93077;Q7L7L0;P04908;Q71UI9;P0C0S5;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;P16104;Q8IUE6;Q96QV6	HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFV;H2AFZ;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;H2AFX;HIST2H2AB;HIST1H2AA	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-A	no	no	0	0	0	4	1.55	1			1	3	26.154	26.154	2	0.0073162	12400	DP1141_4	111.65	58.297			17313000000	58	69;90;91;110	56	90;91;92;93;94	131;132;133;134;135;136;137	133		7	9606
AGLQFPVGRVHR	Unmodified	1335.7524	0.75238693	91;69;110	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;P16104;Q8IUE6	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;H2AFX;HIST2H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2AX;Histone H2A type 2-B	no	no	0	0	1	5	0					1	16.686	16.686	3	0.029628	8891	DP1141_5	73.841	38.164			1761699999.9999998	59	69;91;110	57	95	138;139	138		2	9606
AGLTLFVGR	Acetyl (Protein N-term)	974.55492	0.5549159	451	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	1	0	0	2	0		1				23.458	23.458	2	0.0035711	19000	DP1141_2	129.68	43.21			0	60	451	58	96	140	140		1	9606
AGPGSLELCGLPSQK	Unmodified	1512.7606	0.76062794	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.5	1.12		1	1	1	1	18.699	18.699	2	7.2784E-297	12173	DP1141_5	272.1	254.5			5399100000	61	316	59	97;98;99;100	141;142;143;144;145;146;147;148;149	149		9	9606
AGTATSPAGSSPAVAGGTQR	Unmodified	1742.8547	0.85473933	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	0.5		1	1			14.613	14.613	2	1.0121E-07	5084	DP1141_3	122.64	83.014			13703000	62	307	60	101;102	150;151	151		2	9606
AGTHILCIK	Unmodified	1011.5535	0.55353569	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				15.824	15.824	2	3.2087E-11	7467	DP1141_2	150.4	97.233			26230000	63	101	61	103	152	152		0	9606
AGVIFPVGR	Unmodified	914.53379	0.53378653	50;459	Q9P0M6;O75367	H2AFY2;H2AFY	Core histone macro-H2A.2;Core histone macro-H2A.1	no	no	0	0	0	4.5	0.5				1	1	18.604	18.604	2	0.0048111	12084	DP1141_5	134.44	71.131			406560000	64	459;50	62	104;105	153;154	154		2	9606
AGVNTVTTLVENKK	Unmodified	1472.8199	0.81985737	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		16.77	16.77	3	1.8695E-05	9670	DP1141_4	148.78	109.2			358170000	65	239	63	106	155	155		1	9606
AHQVVEDGYEFFAK	Unmodified	1638.7678	0.7678218	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0.707			1	2	1	18.896	18.896	2;3	7.236E-05	12076	DP1141_5	113.54	99.526			1142700000	66	164;225;226	64	107;108;109;110	156;157;158;159	159		4	9606
AHQVVEDGYEFFAKR	Unmodified	1794.8689	0.86893283	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			1	1		18.4	18.4	3	5.4221E-39	12375	DP1141_4	173.33	126.67			216280000	67	164;225;226	65	111;112	160;161;162;163	163		4	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	2 Oxidation (M)	3215.4724	0.4724082	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	1	2.67	0.745		3	2	1		15.95	15.95	3;4;5	5.8375E-11	7931	DP1141_2	95.889	79.878			418120000	68	316	66	113;114;115;116;117;118	164;165;166;167;168;169;170;171;172;173	168	278;279	10	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	Oxidation (M)	3199.4775	0.47749358	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2.75	0.829		2	1	1		16.634	16.634	4;5	1.6744E-15	8728	DP1141_2	103.57	84.875			102330000	69	316	66	119;120;121;122	174;175;176;177;178;179	176	278;279	6	9606
AIENIDTLTNLESLFLGK	Unmodified	1990.0623	0.062272491	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		24.897	24.897	2	1.3248E-12	21956	DP1141_4	185.95	117.59			10302000	70	330	67	123	180	180		1	9606
AIEPPPLDAVIEAEHTLR	Unmodified	1970.0473	0.047291129	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					21.337	21.337	3	0.003227	16024	DP1141_1	74.812	49.471			47446000	71	288	68	124	181	181		1	9606
AIGIGAYLVR	Unmodified	1031.6128	0.61276513	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					20.238	20.238	2	5.1823E-12	14234	DP1141_1	173.59	101.36			0	72	302;31	69	125	182	182		1	9606
AIGPHDVLATLLNNLK	Unmodified	1687.9621	0.96210494	53	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				23.45	23.45	2	9.7218E-39	19056	DP1141_2	168.85	115.77			4198500	73	53	70	126	183	183		1	9606
AIIASNIMYIVGQYPR	Oxidation (M)	1823.9604	0.96039038	38	O14980	XPO1	Exportin-1	yes	yes	0	1	0	2	0		1				21.24	21.24	2	0.0061644	15677	DP1141_2	94.465	37.51			11893000	74	38	71	127	184	184	31	1	9606
AIIASNIMYIVGQYPR	Unmodified	1807.9655	0.96547575	38	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				22.735	22.735	2	0.0043846	17970	DP1141_2	122.51	98.439			2540900	75	38	71	128	185	185		1	9606
AIIIFVPVPQLK	Unmodified	1336.8482	0.84824438	224	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	22.672	22.672	2	0.0011305	18261	DP1141_5	123.92	111.1			64669000	76	224	72	129	186	186		1	9606
AIIRHSDLVTK	Unmodified	1251.7299	0.72992016	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.582	14.582	3	0.027593	5201	DP1141_1	83.883	46.186			31470000	77	302	73	130	187	187		0	9606
AILVDLEPGTMDSVR	Oxidation (M)	1630.8236	0.82362212	81;312;308	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	2.67	1.25	1		1	1		19.712	19.712	2	1.3676E-50	14266	DP1141_4	184.44	134.34			1045199999.9999999	78	81;312;308	74	131;132;133	188;189;190;191;192;193;194;195	193	66	8	9606
AILVDLEPGTMDSVR	Unmodified	1614.8287	0.8287075	81;312;308	P07437;Q9BVA1;Q13885;Q13509	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	1.12		1	1	1	1	20.658	20.658	2	1.0791E-94	14677	DP1141_3	237.53	169.63			186060000	79	81;312;308	74	134;135;136;137	196;197;198;199;200;201;202;203	197		8	9606
AISAHFDDSSASSLK	Unmodified	1534.7264	0.72635092	459	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	0	4	0				1		16.553	16.553	3	0.0033381	9349	DP1141_4	104.09	82.231			123730000	80	459	75	138	204	204		1	9606
AISSYFVSTMSSSIK	Unmodified	1606.7913	0.79125936	50	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		20.796	20.796	2	1.9188E-156	15857	DP1141_4	223.77	161.61			24793000	81	50	76	139	205	205		1	9606
AIVSSGTLGDR	Unmodified	1074.5669	0.56693715	280	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				16.024	16.024	2	1.7641E-08	7691	DP1141_2	146.79	82.028			45468000	82	280	77	140	206	206		0	9606
AKEQEAEPEEQEEDSSSDPR	Unmodified	2288.9517	0.951672	213	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	1	4	1			1		1	13.822	13.822	3	0.0048353	4251	DP1141_3	82.034	71.787			25855000	83	213	78	141;142	207;208	207		2	9606
AKSSTATHPPGPAVQLNK	Unmodified	1802.9639	0.96389585	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		2				14.312	14.312	3;4	0.0053343	5105	DP1141_2	66.436	36.856			9183700	84	316	79	143;144	209;210	210		2	9606
ALAAAGYDVEK	Unmodified	1106.5608	0.56078914	111;95	P16403;P16402;Q02539;P22492;P10412	HIST1H1C;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.4	no	no	0	0	0	4.5	0.5				1	1	16.34	16.34	2	0.0017373	9142	DP1141_4	140.11	83.065			4857700000	85	111;95	80	145;146	211;212	211		2	9606
ALAAAGYDVEKNNSR	Unmodified	1577.7798	0.77978347	111;95	P16403;P16402;Q02539;P22492;P10412	HIST1H1C;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.4	no	no	0	0	1	4	0				2		15.391	15.391	2;3	1.1810000000000001E-78	7485	DP1141_4	234.04	151.97			833370000	86	111;95	81	147;148	213;214;215	214		3	9606
ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK	Unmodified	3807.9214	0.92138569	74	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	21.434	21.434	3	2.0432E-22	16461	DP1141_5	91.911	78.568			77712000	87	74	82	149	216	216		1	9606
ALAVSDLNR	Unmodified	957.52434	0.52434406	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			16.674	16.674	2	3.9095E-32	8548	DP1141_1	181.81	85.772			1345200000	88	101	83	150;151;152	217;218;219;220;221	218		5	9606
ALEEANADLEVK	Unmodified	1300.6511	0.65106071	5;10	CON__P02533;P02533;CON__Q6IFX2;CON__ENSEMBL:ENSP00000377550;CON__P19012;P19012;P13646;CON__P13646-1;CON__P08779;P08779	KRT14;KRT15;KRT13;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 16	no	no	0	0	0	1	0	1					17.038	17.038	2	6.0918E-05	9149	DP1141_1	129.85	74.767		+	0	89	5;10	84	153	222	222		1	9606
ALEESNYELEGK	Unmodified	1380.6409	0.64088996	12	P13645;CON__P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.67	1.7	1	1			1	16.906	16.906	2	6.222E-50	9120	DP1141_2	188.04	155.23		+	1840599999.9999998	90	12	85	154;155;156	223;224;225;226;227;228	226		6	9606
ALEHFTDLYDIKR	Unmodified	1619.8308	0.83075641	271	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	1	0	1					18.543	18.543	3	0.0071104	11622	DP1141_1	100.02	71.589			0	91	271	86	157	229	229		1	9606
ALELTGLK	Unmodified	843.50657	0.50656873	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0			2			18.193	18.193	1;2	9.521299999999999E-36	10828	DP1141_3	172.14	40.051			77995000	92	123	87	158;159	230;231;232	232		2	9606
ALEQIDENLIYWPR	Unmodified	1758.8941	0.89408495	419	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		22.308	22.308	2	2.8223E-224	18214	DP1141_4	247.3	184.23			27945000	93	419	88	160	233;234	233		2	9606
ALGAEIVR	Unmodified	827.4865	0.48650199	160	P35520	CBS	Cystathionine beta-synthase	yes	yes	0	0	0	1	0	1					16.226	16.226	2	0.0042975	7974	DP1141_1	132.96	40.77			10599000	94	160	89	161	235	235		1	9606
ALIAAQLDNAIEKELLER	Unmodified	2009.1157	0.11570504	419	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	1	4	0				1		22.493	22.493	3	2.8817E-06	18475	DP1141_4	133.25	96.072			31960000	95	419	90	162	236	236		1	9606
ALLRDVSLQDPR	Acetyl (Protein N-term)	1423.7783	0.77832691	296	Q12851	MAP4K2	Mitogen-activated protein kinase kinase kinase kinase 2	yes	yes	1	0	1	2	0		1				15.877	15.877	2	0.013319	7424	DP1141_2	85.67	12.437			0	96	296	91	163	237	237		1	9606
ALLTTNQLPQPDVFPLFK	Unmodified	2041.1248	0.12481317	455	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	3	0			1			23.239	23.239	2	0	18580	DP1141_3	314.48	285.41			25276000	97	455	92	164	238;239;240	239		3	9606
ALPNNTSSSPQPK	Unmodified	1339.6732	0.67319314	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.25	1.48	1		1	1	1	13.879	13.879	2	2.5606E-12	4143	DP1141_3	156.16	103.44			119800000	98	67	93	165;166;167;168	241;242;243;244;245;246;247;248;249;250	244		10	9606
ALTSFLPAPTQLSQDQLEAEEK	Acetyl (Protein N-term)	2457.2275	0.22749992	309	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	0	4	1			1		1	24.059	24.059	3	9.7529E-14	19814	DP1141_3	138.82	106.24			5000800	99	309	94	169;170	251;252;253;254	252		4	9606
ALTVPELTQQMFDAK	Unmodified	1690.86	0.86000763	258;308	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	3	0			1			21.907	21.907	2	0.0018286	16446	DP1141_3	130.1	69.609			48145000	100	258;308	95	171	255	255		1	9606
ALTVPELTQQMFDAK	Oxidation (M)	1706.8549	0.85492225	258;308	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	4	0				1		19.766	19.766	2	0.011782	14412	DP1141_4	92.19	14.593			86151000	101	258;308	95	172	256;257	257	214	2	9606
ALTVPELTQQVFDAK	Unmodified	1658.8879	0.88793694	81	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.75	0.829			2	1	1	21.686	21.686	2;3	0.0010676	16797	DP1141_5	115.29	73.076			665740000	102	81	96	173;174;175;176	258;259;260;261;262;263;264;265	265		8	9606
ALVDGPCTQVR	Unmodified	1214.6078	0.60775611	199	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	16.316	16.316	2	0.00073197	8190	DP1141_5	143.7	79.439			186420000	103	199	97	177	266;267;268	268		3	9606
ALVDILSEVSK	Unmodified	1172.6653	0.66525421	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.601	21.601	2	0.026767	16346	DP1141_2	126.31	89.756			10863000	104	410	98	178	269	269		0	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	Unmodified	3135.3979	0.39788908	285	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4.5	0.5				1	1	21.445	21.445	3	1.2498999999999998E-19	16539	DP1141_5	124.39	108.05			73714000	105	285	99	179;180	270;271;272;273;274;275	272		6	9606
ALVNQLHER	Unmodified	1078.5883	0.5883413	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	1			1		1	15.007	15.007	2	0.0082413	5928	DP1141_3	126.41	82.017			244250000	106	436	100	181;182	276;277	276		2	9606
AMEVDIEERPK	Oxidation (M)	1331.6391	0.63911582	486	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	1	1	5	0					1	14.82	14.82	3	0.020685	5809	DP1141_5	84.507	28.076			16455000	107	486	101	183	278	278	385	0	9606
AMGEQAVALAR	Oxidation (M)	1131.5706	0.57064232	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			15.543	15.543	2	0.00016814	6615	DP1141_3	131.22	77.255			95699000	108	72	102	184;185	279;280;281	281	48	3	9606
AMGEQAVALAR	Unmodified	1115.5757	0.5757277	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1	0	1					16.903	16.903	2	0.012109	8915	DP1141_1	108.98	69.956			60501000	109	72	102	186	282	282		0	9606
AMGIMNSFVNDIFER	2 Oxidation (M)	1774.8018	0.80184082	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q8N257;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	2	0	4.89	0.314				1	8	27.641	27.641	2	7.3377E-157	16446	DP1141_5	226.33	187.62			17191000000	110	47;133;216	103	187;188;189;190;191;192;193;194;195	283;284;285;286;287;288;289;290;291;292;293;294;295;296;297	286	34;35	14	9606
AMGIMNSFVNDIFER	Oxidation (M)	1758.8069	0.8069262	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q8N257;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	1	0	5	0					2	22.293	22.293	2	8.8355E-63	17683	DP1141_5	186.74	137.27			1331600000	111	47;133;216	103	196;197	298;299;300;301	299	34;35	4	9606
AMGIMNSFVNDIFER	Unmodified	1742.812	0.81201158	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q8N257;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	0	5	0					1	23.908	23.908	2	2.6912E-95	20073	DP1141_5	205.56	163.86			235080000	112	47;133;216	103	198	302;303;304	303		3	9606
AMLTPKPAGGDEKDIK	Oxidation (M)	1685.8658	0.86582129	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	2.5	0.5		2	2			13.985	13.985	3;4	0.0023169	4570	DP1141_2	101.75	39.415			54474000	113	182	104	199;200;201;202	305;306;307;308	306	166	3	9606
AMPVTKPITVTK	Oxidation (M)	1300.7425	0.74245868	393	Q96KM6	ZNF512B	Zinc finger protein 512B	yes	yes	0	1	1	2	0		1				14.339	14.339	3	0.0016414	5083	DP1141_2	114.71	87.96			12146000	114	393	105	203	309	309	328	1	9606
AMTDTFTLQAHDQFSPFSSSSGR	Oxidation (M)	2533.118	0.11796624	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			19.602	19.602	3	0.0019908	13289	DP1141_3	86.539	69.188			48551000	115	399	106	204	310	310	333	1	9606
AMVTETMTKLR	Oxidation (M)	1295.6577	0.65774277	389	Q96G01	BICD1	Protein bicaudal D homolog 1	yes	yes	0	1	1	4	0				1		18.937	18.937	2	0.016902	13155	DP1141_4	95.741	43.339			0	116	389	107	205	311	311	327	1	9606
APAMFNIR	Oxidation (M)	934.46947	0.46947171	220	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		16.77	16.77	2	0.0082001	9739	DP1141_4	119.22	85.483			375990000	117	220	108	206	312	312	192	1	9606
APAMQPAEIQFAQR	Oxidation (M)	1572.7719	0.77186132	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.33	1.25		1	1		1	17.375	17.375	2;3	1.2129E-284	9827	DP1141_2	258.01	218.83			629960000	118	316	109	207;208;209	313;314;315	313	280	3	9606
APAMQPAEIQFAQR	Unmodified	1556.7769	0.7769467	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		2				18.523	18.523	2;3	4.5779E-125	11722	DP1141_2	218.52	170.96			227810000	119	316	109	210;211	316;317;318	316		3	9606
APGEQTVPALNLQNAFR	Unmodified	1824.9482	0.94824579	490	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					20.736	20.736	2	2.5764E-44	14869	DP1141_1	168.83	140.91			74054000	120	490	110	212	319	319		0	9606
APIRPDIVNFVHTNLR	Unmodified	1861.0323	0.032250187	163	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3.5	0.5			1	1		19.349	19.349	3;4	0.00014408	12741	DP1141_3	102.72	86.033			143660000	121	163	111	213;214	320;321	320		1	9606
APKPDGPGGGPGGSHMGGNYGDDR	Oxidation (M)	2267.9614	0.96140602	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3.5	1.12		1	1	1	1	13.181	13.181	4	0.0050076	3892	DP1141_2	65.189	56.253			566640000	122	161	112	215;216;217;218	322;323;324;325;326;327	323	151	5	9606
APKPDGPGGGPGGSHMGGNYGDDR	Unmodified	2251.9665	0.9664914	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	4.25	0.829			1	1	2	14.462	14.462	3;4	4.0832E-23	5252	DP1141_5	142.32	115.78			188070000	123	161	112	219;220;221;222	328;329;330;331;332;333;334	331		6	9606
APPAVMAAVDQALK	Oxidation (M)	1396.7384	0.73843593	449	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	1	0	4	0				1		36.749	36.749	1	0.026698	35382	DP1141_4	50.284	27.544			212050	124	449	113	223	335	335	370	1	9606
APSSPVAKPGPVK	Unmodified	1233.7081	0.70812208	422	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	1	3	0			1			14.013	14.013	3	0.0093673	3937	DP1141_3	81.565	58.784			6273900	125	422	114	224	336;337	336		2	9606
APSTYGGGLSVSSSR	Unmodified	1424.6896	0.68957148	5	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1	0	1					16.548	16.548	2	2.8935E-09	8260	DP1141_1	142.89	105.55		+	101240000	126	5	115	225	338	338		1	9606
AQALEDLAGFK	Unmodified	1161.603	0.60298831	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	3	0			1			19.483	19.483	2	0.0072549	12886	DP1141_3	107.15	67.607			0	127	182	116	226	339	339		1	9606
AQALEDLAGFKELFQTR	Unmodified	1936.0054	0.005426314	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	0			1			22.069	22.069	3	4.6894E-05	16758	DP1141_3	119.96	83.616			0	128	182	117	227	340	340		1	9606
AQDQGEKENPMR	Acetyl (Protein N-term)	1443.6412	0.64124108	250	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	3	2	1				1	14.865	14.865	2	3.7807999999999995E-65	5761	DP1141_5	180.19	140.13			52324000	129	250	118	228;229	341;342;343	343		2	9606
AQEEGPGEPPPPELALLPPPPPPPPTPATPTSSASNLDLGEQR	Unmodified	4345.1754	0.17541135	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				2		21.898	21.898	3;4	1.2371E-48	17590	DP1141_4	120.6	113.57			246280000	130	357	119	230;231	344;345;346;347	344		4	9606
AQEPESGLSEETQVK	Unmodified	1630.7686	0.76860967	263	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.164	16.164	2	0.037913	7665	DP1141_1	100.93	50.737			0	131	263	120	232	348	348		1	9606
AQHQQALSSLELLNVLFR	Unmodified	2066.1273	0.12727278	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		2				23.407	23.407	2	4.3103999999999996E-67	18877	DP1141_2	203.74	171.01			0	132	410	121	233;234	349;350	349		2	9606
AQIHDLVLVGGSTR	Unmodified	1464.8049	0.80487601	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	3	1.1	1		2	2		17.803	17.803	2;3	8.6059E-08	11286	DP1141_4	153.49	128.37			1735899999.9999998	133	93	122	235;236;237;238;239	351;352;353;354;355	354		5	9606
AQLEQSVEENKER	Unmodified	1558.7587	0.75871368	400	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				14.426	14.426	3	0.0073286	5259	DP1141_2	94.688	58.851			63207000	134	400	124	240	356	356		1	9606
AQPLEDLAGFTELSETSGHTQESLTAGK	Unmodified	2916.3989	0.39887536	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				20.9	20.9	3	0.018671	15397	DP1141_2	41.294	24.269			75273000	135	182	125	241	357	357		1	9606
AQPLEDLASFQELSQTPGHTEELANGAADSFTSAPK	Unmodified	3756.7755	0.77549254	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.57	21.57	3	1.9053E-07	16442	DP1141_2	55.366	37.747			26473000	136	182	126	242	358;359	358		2	9606
AQSLVISPPAPSPR	Unmodified	1418.7882	0.78816332	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0.816		1	1	1		17.899	17.899	2	0.0027426	11473	DP1141_4	152.64	105.91			179390000	137	182	127	243;244;245	360;361;362;363;364	364		5	9606
AQVVHLLSTMDSPAST	Oxidation (M)	1671.8138	0.81378572	31	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.158	18.158	2	0.026953	10971	DP1141_1	66.56	26.775			9767800	138	31	128	246	365	365	22	1	9606
AQWQEEPGGPAPHAVPAPAK	Unmodified	2037.0068	0.0068232975	499				yes	yes	0	0	0	5	0					1	21.336	21.336	3	0.0031849	16298	DP1141_5	60.542	0	+		191380000	139	499	129	247	366	366		1	9606
AQYEDIAQK	Unmodified	1064.5138	0.51383895	65	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	2	0.816	1	1	1			15.161	15.161	2	7.5454E-18	5992	DP1141_3	156.51	91.75		+	576030000	140	65	130	248;249;250	367;368;369;370;371;372	372		5	9606
AQYEEIANR	Unmodified	1092.52	0.51998696	13	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	2.5	0.5		1	1			15.371	15.371	2	0.0093541	6434	DP1141_3	119.41	54.695		+	4397900	141	13	131	251;252	373;374	374		2	9606
ARFEELCSDLFR	Unmodified	1541.7297	0.72966216	93;114	P0DMV8;P0DMV9;P17066;P48741	HSPA1A;HSPA1B;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	1	3	0			1			20.003	20.003	2	6.228599999999999E-163	13744	DP1141_3	220.5	158.72			172450000	142	93;114	132	253	375	375		0	9606
ARFEELNADLFR	Unmodified	1479.747	0.74702678	98	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			1			19.804	19.804	3	7.3154E-23	13297	DP1141_3	160.52	122.35			59828000	143	98	133	254	376	376		0	9606
ARHDSPDLAPNVTYSLPR	Unmodified	2008.0126	0.012636957	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	1	3	0			1			17.715	17.715	3	0.00071073	10199	DP1141_3	90.872	74.187			12681000	144	412	134	255	377	377		1	9606
ARHDTPDPSPLR	Unmodified	1360.6848	0.68476088	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	1	3	0			1			14.056	14.056	3	0.00029403	4365	DP1141_3	132.17	102.37			9181800	145	412	135	256	378	378		1	9606
ASAAVESFVTKQLDLLELER	Acetyl (Protein N-term)	2260.1951	0.19507758	170	P38935	IGHMBP2	DNA-binding protein SMUBP-2	yes	yes	1	0	1	5	0					1	21.8	21.8	4	0.015203	16661	DP1141_5	65.905	36.482			6257700	146	170	136	257	379	379		0	9606
ASAQDAGDHVQPPEGR	Unmodified	1633.7445	0.7444606	386	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4.33	0.471				2	1	14.087	14.087	2;3	4.0887E-32	5483	DP1141_4	157.09	113.57			180440000	147	386	137	258;259;260	380;381;382;383;384;385;386	385		6	9606
ASASYHISNLLEK	Acetyl (Protein N-term)	1473.7464	0.74635808	358	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	1	0	0	5	0					3	19.704	19.704	2	9.587E-07	13796	DP1141_5	124.6	69.246			0	148	358	138	261;262;263	387;388;389	388		3	9606
ASAVSELSPR	Unmodified	1015.5298	0.52982336	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		2				15.999	15.999	2	0.0014456	7563	DP1141_2	155.42	98.871			0	149	482	139	264;265	390;391	390		2	9606
ASESSKPWPDATYGTGSASR	Unmodified	2053.9341	0.93411186	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	1.5	0.5	1	1				16.616	16.616	3	6.5592E-08	8681	DP1141_2	119.37	107.83			168030000	150	482	140	266;267	392;393	393		2	9606
ASGGSLQGHDAVLR	Unmodified	1366.6953	0.69532556	370	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	4	0				1		14.994	14.994	3	0.0032854	6853	DP1141_4	104.7	63.454			0	151	370	141	268	394	394		1	9606
ASGNYATVISHNPETK	Unmodified	1687.8166	0.81656291	251	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	3.33	1.7	1			1	1	15.786	15.786	3	0.00023399	8114	DP1141_4	159.41	123.76			441870000	152	251	142	269;270;271	395;396;397;398;399	396		5	9606
ASGNYATVISHNPETKK	Unmodified	1815.9115	0.91152593	251	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				2		14.902	14.902	3;4	1.454E-36	6764	DP1141_4	166.52	142.25			164820000	153	251	143	272;273	400;401	400		1	9606
ASGPPVSELITK	Unmodified	1197.6605	0.66050319	111;95	P16403;P16402;P10412	HIST1H1C;HIST1H1D;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.4	no	no	0	0	0	4	0				1		17.994	17.994	2	0.00076696	11376	DP1141_4	118.23	61.799			1181600000	154	111;95	144	274	402;403	403		2	9606
ASITPGTILIILTGR	Unmodified	1524.9239	0.92392852	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4.33	0.471				2	1	24.562	24.562	2;3	6.4404E-78	21452	DP1141_4	194.39	169.27			116600000	155	276	145	275;276;277	404;405;406;407;408;409	408		6	9606
ASLENSLEETKGR	Unmodified	1432.7158	0.71578623	5;10	CON__P02533;P02533;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779;P08779	KRT14;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	1	2	0		1				15.86	15.86	3	3.3672E-05	7396	DP1141_2	129.34	72.792		+	0	156	5;10	146	278	410	410		1	9606
ASPSLERPEK	Acetyl (Protein N-term)	1154.5932	0.5931519	310	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	1	0	1	3.5	0.5			1	1		15.302	15.302	2	0.0034396	6217	DP1141_3	101.65	60.922			80976000	157	310	147	279;280	411;412	411		1	9606
ASPSPTDPVVPAVPIGPPPAGFR	Unmodified	2225.1845	0.18445331	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.894	2	1	2			20.716	20.716	2;3	1.0422E-93	14973	DP1141_1	228.17	200.49			300900000	158	101	148	281;282;283;284;285	413;414;415;416;417;418;419;420;421;422;423;424	413		12	9606
ASQPDLVDTPTSSKPQPK	Unmodified	1894.9636	0.96362108	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.5		1	1			15.113	15.113	3	0.0049099	6094	DP1141_3	76.378	49.17			103820000	159	182	149	286;287	425;426	426		1	9606
ASSLNENVDHSALLK	Unmodified	1596.8107	0.81074925	400	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	0	2	0		1				16.616	16.616	3	0.023543	8646	DP1141_2	78.985	42.354			30550000	160	400	150	288	427	427		0	9606
ASVVLALR	Acetyl (Protein N-term)	869.53345	0.53345218	460	Q9P0M9	MRPL27	39S ribosomal protein L27, mitochondrial	yes	yes	1	0	0	3	1.58	1	1		1	1	16.788	16.788	2	0.0076477	8663	DP1141_1	82.263	19.545			47231000000	161	460	151	289;290;291;292	428;429;430;431;432;433	428		5	9606
ATAGDTHLGGEDFDNR	Unmodified	1674.7234	0.72339081	93;114	P0DMV8;P0DMV9;P34931;P17066;P48741	HSPA1A;HSPA1B;HSPA1L;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	2.33	0.943	1		2			15.92	15.92	2;3	3.2274999999999996E-40	7337	DP1141_3	177.83	158.23			1542299999.9999998	162	93;114	152	293;294;295	434;435;436;437;438	437		4	9606
ATALPLLK	Unmodified	825.53239	0.53238955	480	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		18.395	18.395	2	0.013151	12308	DP1141_4	124.59	47.748			32011000	163	480	153	296	439	439		1	9606
ATAPQTQHVSPMR	Unmodified	1422.7038	0.70378176	143	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		13.918	13.918	3	0.011096	5212	DP1141_4	80.312	63.934			3595100	164	143	154	297	440	440		1	9606
ATENDIANFFSPLNPIR	Unmodified	1917.9585	0.95847612	148	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4.33	0.471				2	1	23.139	23.139	2;3	1.2479E-08	18942	DP1141_5	141.34	83.917			195870000	165	148	155	298;299;300	441;442;443;444;445	444		4	9606
ATENDIYNFFSPLNPVR	Unmodified	1995.969	0.96904081	149;206	P52597;P31943	HNRNPF;HNRNPH1	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	no	no	0	0	0	3.8	0.748			2	2	1	23.196	23.196	2;3	9.1846E-279	19522	DP1141_4	331.54	276.5			198840000	166	206;149	156	301;302;303;304;305	446;447;448;449;450;451;452;453;454;455;456	453		11	9606
ATIAGGGVIPHIHK	Unmodified	1369.783	0.78301836	90	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	16.155	16.155	3	0.0035973	7729	DP1141_5	88.101	74.422			1042599999.9999999	167	90	157	306	457;458	457		2	9606
ATLQEILPEVLK	Unmodified	1352.7915	0.79151736	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	3	1		1		1		22.143	22.143	2	2.7587E-05	17029	DP1141_2	147.3	104.97			45053000	168	410	158	307;308	459;460	459		2	9606
ATTATMATSGSARK	Acetyl (Protein N-term);Oxidation (M)	1410.6773	0.67729224	169	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	1	1	1	0	1					22.754	22.754	2	0.030844	17891	DP1141_1	58.699	25.321			4350900	169	169	159	309	461	461	158	1	9606
AVAFFLESIAMHDIIAAEK	Oxidation (M)	2091.0711	0.071063038	263	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					23.118	23.118	3	8.5051E-06	18608	DP1141_1	105.06	83.393			7635200	170	263	160	310	462	462	221	1	9606
AVAFQNPQTHVIENLHAAAYR	Unmodified	2349.1978	0.19781197	129	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		18.395	18.395	4	0.0032647	12346	DP1141_4	86.455	64.856			52270000	171	129	161	311	463	463		1	9606
AVDIPHMDIEALKK	Oxidation (M)	1594.8389	0.83887826	248	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	1	5	0					1	16.72	16.72	3	0.0034586	8979	DP1141_5	94.688	65.909			118400000	172	248	162	312	464	464	206	1	9606
AVDSLVPIGR	Unmodified	1025.5869	0.58694431	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.404	18.404	2	0.037282	11370	DP1141_3	96.253	40.577			83270000	173	137	163	313	465	465		1	9606
AVDSQILPK	Unmodified	969.5495	0.54949617	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	2.5	1.5	1			1		16.582	16.582	2	0.023466	8337	DP1141_1	90.37	23.377			206760000	174	276	164	314;315	466;467;468	466		3	9606
AVEELAYK	Unmodified	921.48075	0.48074791	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3	0			1			16.313	16.313	2	0.018612	7598	DP1141_3	107.32	44.602			57445000	175	412	165	316	469	469		1	9606
AVFPSIVGR	Unmodified	944.54435	0.54435122	254	P63261;P60709;Q6S8J3;A5A3E0;P63267;P68133;P68032;P62736;P0CG38	ACTG1;ACTB;POTEE;POTEF;ACTG2;ACTA1;ACTC1;ACTA2;POTEI	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member I	yes	no	0	0	0	3	1.41	1	1	1	1	1	19.03	19.03	2	0.0015285	12558	DP1141_1	143.11	82.319			364350000	176	254	166	317;318;319;320;321	470;471;472;473;474	470		5	9606
AVFVDLEPTVIDEVR	Unmodified	1700.8985	0.89850163	257;409	P68363;Q9BQE3;Q71U36	TUBA1B;TUBA1C;TUBA1A	Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain	no	no	0	0	0	3	0			1			21.807	21.807	2	4.5974999999999996E-265	16375	DP1141_3	251.34	192.91			1013799999.9999999	177	257;409	167	322	475;476;477;478	478		4	9606
AVGHPFVIQLGR	Unmodified	1292.7353	0.73533988	38	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				18.598	18.598	3	0.007502	11815	DP1141_2	64.103	41.525			44537000	178	38	168	323	479	479		1	9606
AVLNNVIFCHQEDSNWPLSEGK	Unmodified	2556.2067	0.20672167	384	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	2	0		1				20.774	20.774	3	0.019947	15046	DP1141_2	51.611	36.926			56694000	179	384	169	324	480	480		1	9606
AVLVDLEPGTMDSVR	Oxidation (M)	1616.808	0.80797206	258	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	yes	no	0	1	0	3.5	0.5			1	1		19.1	19.1	2	0.0081338	12465	DP1141_3	78.692	58.93			91800000	180	258	170	325;326	481;482	481	215	2	9606
AVNYVGAGTVEFIMDSK	Oxidation (M)	1815.8713	0.8713006	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			20.202	20.202	2;3	9.5061E-08	14303	DP1141_2	138.31	96.924			240000000	181	399	171	327;328;329	483;484;485;486;487	484	334	5	9606
AVSILPLLGHGVPR	Unmodified	1427.8613	0.86126868	483	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	2	0		1				20.2	20.2	3	0.012578	14267	DP1141_2	67.879	55.084			13114000	182	483	172	330	488	488		1	9606
AVSREDSVKPGAHLTVK	Unmodified	1792.9795	0.97954591	203	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	4	0				1		14.142	14.142	4	0.022893	5525	DP1141_4	65.477	36.837			22974000	183	203	173	331	489	489		1	9606
AVTEQGHELSNEER	Unmodified	1597.7332	0.73322721	151	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	3	2	1				1	14.09	14.09	3	0.00091379	4564	DP1141_5	154.36	108.64			17591000	184	151	174	332;333	490;491;492	491		3	9606
AVTIANSPSKPSEK	Unmodified	1427.762	0.76200815	369	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	1	3	0			1			13.871	13.871	3	0.001231	4144	DP1141_3	119.88	65.109			4085100	185	369	175	334	493	493		1	9606
AVTSPGQALSTVVKPLLQNTVDK	Unmodified	2365.3217	0.32167508	350	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	1	2	0		1				21.532	21.532	3	0.0010123	16172	DP1141_2	100.01	81.383			0	186	350	176	335	494	494		1	9606
AVVGVVAGGGR	Unmodified	940.54541	0.54541385	251	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	5	0					1	15.401	15.401	2	0.00014368	6781	DP1141_5	148.04	93.838			51990000	187	251	177	336	495	495		1	9606
AVVMDLLR	Oxidation (M)	931.51609	0.51608756	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.358	18.358	2	0.037025	11332	DP1141_1	90.777	49.275			894340000	188	302	178	337	496	496	240	1	9606
AVVVCPKDEDYKQR	Unmodified	1705.8458	0.84575455	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	1	0	1					14.539	14.539	4	0.00020604	5057	DP1141_1	118.87	95.723			1818700	189	272	179	338	497	497		0	9606
AYAALAALEK	Unmodified	1019.5651	0.56514624	299	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	3	0			1			18.804	18.804	2	0.038114	11842	DP1141_3	85.67	56.521			4437500	190	299	180	339	498	498		1	9606
AYGGAYDVMSSK	Oxidation (M)	1263.5442	0.5441528	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			15.599	15.599	2	0.021223	6681	DP1141_3	101.38	77.226			0	191	73	181	340	499	499	53	1	9606
AYSEALAAFGNGALFVEK	Unmodified	1856.9309	0.93086439	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0			1			22.24	22.24	2	5.583E-07	17029	DP1141_3	144.29	87.063			0	192	101	182	341	500	500		1	9606
AYVVLGQFLVLK	Unmodified	1348.8119	0.81185887	52	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	5	0					1	22.832	22.832	2	0.0014239	18523	DP1141_5	129.42	97.661			49246000	193	52	183	342	501	501		1	9606
AYVWDNNKDLAEWLEK	Unmodified	1992.9581	0.95814177	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					21.537	21.537	3	4.9582000000000005E-24	16178	DP1141_1	153.2	114.98			52646000	194	302	184	343	502	502		0	9606
CGVQSFYTPR	Unmodified	1213.555	0.55499226	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				1		17.695	17.695	2	2.665E-74	11254	DP1141_4	225.24	183.81			371610000	195	357	185	344	503;504	503		2	9606
CMQLTDFILK	Oxidation (M)	1283.6254	0.62538001	199	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	1	0	5	0					1	20.472	20.472	2	8.5059E-39	15041	DP1141_5	174.02	121.62			52955000	196	199	186	345	505	505	178	0	9606
CPFTGNVSIR	Unmodified	1149.5601	0.56007764	235	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	17.475	17.475	2	0.027359	10193	DP1141_5	117.81	37.349			0	197	235	187	346	506	506		1	9606
CPQIVIAFYEER	Unmodified	1523.7442	0.74424959	181;305	P45973;Q13185	CBX5;CBX3	Chromobox protein homolog 5;Chromobox protein homolog 3	no	no	0	0	0	5	0					1	20.936	20.936	2	0.021858	15834	DP1141_5	97.813	53.174			60490000	198	181;305	188	347	507	507		1	9606
CPQVVISFYEER	Unmodified	1525.7235	0.72351415	267	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	0	5	0					1	19.985	19.985	2	0.0010484	14328	DP1141_5	134.84	88.848			87174000	199	267	189	348	508	508		1	9606
CSDSDGLAPPQHLIR	Unmodified	1664.7941	0.79405333	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.5	0.5			1	1		17.099	17.099	3	1.5356E-15	9116	DP1141_3	150.69	123.02			860840000	200	67	190	349;350	509;510	509		2	9606
CTGGEVGATSALAPK	Unmodified	1417.6871	0.68712864	146	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	16.065	16.065	2	2.9275E-134	7883	DP1141_5	218.62	172.16			157190000	201	146	191	351	511;512	512		2	9606
DAEAWFNEK	Unmodified	1108.4825	0.48253882	12	P13645;CON__P13645;CON__Q7Z3Y7;CON__Q148H6;Q7Z3Y7;Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Z0;CON__Q7Z3Y8	KRT10;KRT28;KRT27;KRT25	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25	yes	no	0	0	0	2	0.816	1	1	1			19.313	19.313	2	0.0034192	12971	DP1141_2	137.9	98.357		+	335900000	202	12	192	352;353;354	513;514;515;516	514		4	9606
DAEDVDLNHYR	Unmodified	1345.5899	0.58985744	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				2		16.553	16.553	2;3	6.096800000000001E-75	9432	DP1141_4	189.7	153.32			192050000	203	330	193	355;356	517;518	517		2	9606
DAEEWFFTK	Unmodified	1171.5186	0.51858998	5	CON__P02533;P02533;CON__Q6IFX2	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1	0	1					21.537	21.537	2	0.0243	16267	DP1141_1	87.476	28.694		+	13253000	204	5	194	357	519	519		1	9606
DAGTIAGLNVMR	Unmodified	1216.6234	0.62340617	97	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			19.504	19.504	2	0.022529	12912	DP1141_3	91.584	40.238			25883000	205	97	195	358	520	520		1	9606
DAHQSLLATR	Unmodified	1110.5782	0.57817054	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				15.429	15.429	2	0.0051181	6576	DP1141_2	113.44	65.871			738100000	206	101	196	359;360	521;522;523	523		3	9606
DALSDLALHFLNK	Unmodified	1455.7722	0.7721789	201	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			23.192	23.192	2	0.0012039	18460	DP1141_3	127.51	92.741			0	207	201	197	361	524	524		1	9606
DAMHEMEEMIETK	3 Oxidation (M)	1640.6368	0.63680891	261	P78316	NOP14	Nucleolar protein 14	yes	yes	0	3	0	2	0		1				14.252	14.252	3	0.014815	4981	DP1141_2	73.881	39.881			5975000	208	261	198	362	525;526	525	218;219;220	2	9606
DAVLNKKLMMK	2 Oxidation (M)	1321.7098	0.70977834	210	P54855	UGT2B15	UDP-glucuronosyltransferase 2B15	yes	yes	0	2	2	4	0				1		20.696	20.696	2	0.036134	16123	DP1141_4	50.878	16.346			20079000	209	210	199	363	527	527	187;188	1	9606
DAVTYTEHAK	Unmodified	1133.5353	0.53530267	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	13.87	13.87	2	1.0151E-45	4247	DP1141_5	189.7	156.15			22668000	210	242	200	364	528;529;530	529		3	9606
DCFGCLR	Unmodified	926.37386	0.37385677	52	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	5	0					1	17.504	17.504	2	0.0084341	10246	DP1141_5	126.04	78.463			133900000	211	52	201	365	531	531		1	9606
DDCGTFEDTGPLLQFDYK	Unmodified	2119.9045	0.90445122	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.5	0.5			1	1		22.304	22.304	2	1.4944000000000002E-115	17171	DP1141_3	228.7	193.05			3334700	212	316	202	366;367	532;533	532		2	9606
DDVAPESGDTTVKKPESK	Unmodified	1901.9218	0.92181584	56	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			13.562	13.562	3	0.024294	3689	DP1141_3	151.48	121.16			0	213	56	203	368	534	534		1	9606
DELHIVEAEAMNYEGSPIK	Oxidation (M)	2160.0045	0.0044996155	80	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.33	0.471				2	1	20.588	20.588	2;3	1.8810000000000001E-146	15708	DP1141_4	220.52	195.99			1012099999.9999999	214	80	204	369;370;371	535;536;537;538	537	59	4	9606
DELHIVEAEAMNYEGSPIK	Unmodified	2144.0096	0.0095849934	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		21.227	21.227	3	1.6382E-73	16657	DP1141_4	189.44	163.23			39929000	215	80	204	372	539;540;541	540		3	9606
DEPIHILNVAIK	Unmodified	1360.7715	0.77145062	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				19.724	19.724	2;3	5.0269E-22	13614	DP1141_2	157.78	99.344			1241300000	216	302	205	373;374;375	542;543;544	544		1	9606
DETYKPHLER	Unmodified	1286.6255	0.62551466	392	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3	0			1			14.607	14.607	3	0.030869	5190	DP1141_3	73.885	49.031			32158000	217	392	206	376	545	545		1	9606
DFFNYLPLSSQDPAPVR	Unmodified	1964.9632	0.96322715	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			22.815	22.815	2	0	17922	DP1141_3	282.21	195.92			85554000	218	73	207	377	546;547	546		2	9606
DFSAPTLEDHFNK	Unmodified	1519.6943	0.69432251	213	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	3	0			1			18.555	18.555	3	0.022288	11438	DP1141_3	83.137	18.763			0	219	213	208	378	548	548		1	9606
DFTATFGPLDSLNTR	Unmodified	1653.7999	0.79985021	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	22.073	22.073	2	0	16873	DP1141_2	308.21	287.21			268650000	220	101	209	379;380;381;382;383	549;550;551;552;553;554;555;556	551		6	9606
DFTVASPAEFVTR	Unmodified	1438.7092	0.70924429	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					20.836	20.836	2	6.2995E-105	14943	DP1141_1	212.21	139.88			736570000	221	302;31	210	384	557;558;559	557		3	9606
DFVAEPMGEKPVGSLAGIGEVLGK	Oxidation (M)	2415.2356	0.23556218	52	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	1	1	5	0					1	20.771	20.771	3	1.9016E-05	15497	DP1141_5	97.253	53.654			82717000	222	52	211	385	560	560	37	1	9606
DFVAEPMGEKPVGSLAGIGEVLGK	Unmodified	2399.2406	0.24064756	52	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	1	5	0					1	21.434	21.434	3	6.6985E-09	16400	DP1141_5	102.19	78.795			47804000	223	52	211	386	561	561		1	9606
DGMQALYKVKSCSMAPPVDLLTGK	2 Oxidation (M)	2640.2961	0.29613031	411	Q9BQS7	HEPH	Hephaestin	yes	yes	0	2	2	4	0				1		20.098	20.098	3	0.014566	15072	DP1141_4	43.216	15.254			51096000	224	411	212	387	562	562	351;352	1	9606
DGQYILATGTYKPR	Unmodified	1581.8151	0.81510635	413	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	1	1	0	1					17.618	17.618	2	0.01033	10246	DP1141_1	127.87	47.179			7981100	225	413	213	388	563	563		1	9606
DHAATTAGAASLAGGHHR	Unmodified	1699.8139	0.81387757	142	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	3	0			1			13.445	13.445	4	0.001735	3497	DP1141_3	88.311	68.075			2144000	226	142	214	389	564;565	565		2	9606
DHAVVVGVYRPPPK	Unmodified	1532.8463	0.8463469	126	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		15.595	15.595	3	0.0011641	7929	DP1141_4	109.16	81.105			127170000	227	126	215	390	566	566		1	9606
DHSVQLPKPVHKPNR	Unmodified	1750.9591	0.95908524	444	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	2	2	0		1				13.971	13.971	4	0.0059555	4576	DP1141_2	79.875	55.081			3757600	228	444	216	391	567	567		1	9606
DHTLVQTIAR	Unmodified	1152.6251	0.62512073	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.5	1.5		1			1	16.383	16.383	2	4.8061E-37	8287	DP1141_2	214.96	158.53			29845000	229	316	217	392;393	568;569	568		1	9606
DIDIHEVR	Unmodified	995.50361	0.50360861	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				16.024	16.024	2	0.011839	7717	DP1141_2	117.04	81.68			256500000	230	272	218	394	570	570		0	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	Unmodified	3263.5066	0.5065879	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				21.919	21.919	3	4.2208999999999997E-50	16913	DP1141_1	162.87	127.1		+	383840000	231	14	219	395;396	571;572;573;574;575	571		5	9606
DIICQIAYAR	Unmodified	1221.6176	0.61759251	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		19.798	19.798	2	0.031987	14460	DP1141_4	117.4	87.081			17123000	232	185	220	397	576	576		0	9606
DIIVIGNDITYR	Unmodified	1390.7456	0.7456298	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					36.765	36.765	2	0.035215	33463	DP1141_1	94.309	64.642			738520	233	302	221	398	577	577		0	9606
DKQNIFEFFER	Unmodified	1471.7096	0.70957864	280	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				21.701	21.701	2	0.03306	16456	DP1141_2	99.343	37.693			8312000	234	280	222	399	578	578		0	9606
DLAILQCHGELDPMVPVR	Oxidation (M)	2078.0289	0.028880648	57	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	1	0	5	0					1	19.993	19.993	3	0.00069069	14259	DP1141_5	90.453	61.441			25424000	235	57	223	400	579	579	38	1	9606
DLALVNDQLLGFVR	Unmodified	1571.8671	0.86714192	337	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				23.45	23.45	2	0.013329	19026	DP1141_2	80.763	35.999			7562700	236	337	224	401	580	580		1	9606
DLEKPFLLPVEAVYSVPGR	Unmodified	2128.1568	0.15684158	193	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		22.325	22.325	3	3.8281E-06	18310	DP1141_4	109.5	92.522			3175200	237	193	225	402	581	581		1	9606
DLGFNGAPYR	Unmodified	1108.5302	0.53015772	490	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					18.658	18.658	2	0.016486	11780	DP1141_1	100.45	71.533			28648000	238	490	226	403	582	582		0	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	2 Oxidation (M)	4299.6572	0.65716542	176	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	2	0	4	0				1		17.123	17.123	3	2.0608999999999997E-132	10303	DP1141_4	189.38	188.38			18933000	239	176	227	404	583;584	583	160;161	2	9606
DLKDYFTK	Unmodified	1028.5179	0.51786169	406	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	1	4	0				1		18.595	18.595	2	1.1816E-30	12575	DP1141_4	181.41	93.711			36232000	240	406	228	405	585;586	585		2	9606
DLLDTVLPHLYNETK	Unmodified	1769.92	0.91996535	358	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				22.494	22.494	3	0.00013349	17490	DP1141_2	113.54	71.979			25654000	241	358	229	406	587;588	587		2	9606
DLLHPSPEEEK	Unmodified	1292.6248	0.62484596	179	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	0	5	0					2	16.314	16.314	2;3	0.0017122	8317	DP1141_5	140.17	82.384			30998000	242	179	230	407;408	589;590	590		2	9606
DLLHPSPEEEKRK	Unmodified	1576.8209	0.82092001	179	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	2	1	0	1					14.582	14.582	3	0.014635	5123	DP1141_1	130.56	111.39			25649000	243	179	231	409	591	591		1	9606
DMPIQAFLLYQEPVLGPVR	Oxidation (M)	2201.1555	0.15546137	7	CON__P02666			yes	yes	0	1	0	3.5	1.12		2	2	2	2	23.628	23.628	2;3	3.6823E-251	20092	DP1141_4	250.52	211.45		+	171710000	244	7	232	410;411;412;413;414;415;416;417	592;593;594;595;596;597;598;599;600;601;602;603;604;605;606;607;608	603	5	17	
DNHLLGTFDLTGIPPAPR	Unmodified	1933.0058	0.005760665	97	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			21.205	21.205	3	0.027953	15575	DP1141_3	54.511	37.15			25506000	245	97	233	418	609	609		1	9606
DNIQGITKPAIR	Unmodified	1324.7463	0.7462985	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	16.745	16.745	2	2.5974E-07	8880	DP1141_5	155.53	122.49			449310000	246	242	234	419	610;611	611		2	9606
DPALNSGVSQKPDPAK	Unmodified	1622.8264	0.82639932	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	2.67	1.25	1		1	1		14.621	14.621	3	0.00078971	5267	DP1141_1	145.94	116.95			64848000	247	100	235	420;421;422	612;613;614;615	612		4	9606
DPAQPMSPGEATQSGAR	Oxidation (M)	1714.7581	0.75806175	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				14.426	14.426	2	1.4815999999999998E-46	5255	DP1141_2	172.33	150.1			12976000	248	410	236	423	616	616	348	1	9606
DPAQPMSPGEATQSGARPADR	Oxidation (M)	2153.976	0.97599345	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	1	2	0		1				14.339	14.339	3	0.020048	5023	DP1141_2	76.761	33.943			15616000	249	410	237	424	617;618	617	348	2	9606
DPSLPLLELQDIMTSVSGR	Oxidation (M)	2086.0616	0.061620564	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					23.568	23.568	2;3	1.6175E-73	19117	DP1141_1	191.63	174.52			37378000	250	302	238	425;426	619;620;621	619	241	3	9606
DPVLAPAVGADLLDYCLAR	Unmodified	2028.035	0.035011883	45	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	2	0		1				23.298	23.298	2	1.5934E-09	18758	DP1141_2	131.66	68.255			0	251	45	239	427	622	622		1	9606
DQVANSAFVER	Unmodified	1234.5942	0.59421454	82	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1			16.748	16.748	2	0.011338	8546	DP1141_3	123.11	69.76			0	252	82	240	428	623	623		1	9606
DREEALHQFR	Unmodified	1299.632	0.63199703	30	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	3	0			1			15.114	15.114	3	0.010333	5941	DP1141_3	94.616	54.991			13413000	253	30	241	429	624	624		0	9606
DSAVAISGADSR	Unmodified	1147.5469	0.54692999	356	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2	0		1				15.319	15.319	2	0.001022	6548	DP1141_2	114.4	69.954			5564400	254	356	242	430	625	625		1	9606
DSTLIMQLLR	Oxidation (M)	1204.6486	0.64855829	253;151	P31946;P27348;Q04917;P61981;P31947;P62258;P63104	YWHAB;YWHAQ;YWHAH;YWHAG;SFN;YWHAE;YWHAZ	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein theta;14-3-3 protein eta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta	no	no	0	1	0	2	0.816	1	1	1			22.201	22.201	2	0.0061109	17140	DP1141_3	146.81	56.659			32717000	255	151;253	243	431;432;433	626;627;628	628	148	3	9606
DTGILDSIGR	Unmodified	1045.5404	0.54038805	64	P02686	MBP	Myelin basic protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.484	19.484	2	4.6819E-96	13967	DP1141_4	199.7	119.99			112090000	256	64	244	434;435;436;437	629;630;631;632	632		2	9606
DTGKTPVEPEVAIHR	Unmodified	1647.858	0.8580338	219	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	1	5	0					3	15.501	15.501	3;4	4.5044000000000003E-35	6952	DP1141_5	187.63	151.63			19511000	257	219	245	438;439;440	633;634;635	633		2	9606
DVDAAYMNKVELEAK	Oxidation (M)	1710.8135	0.81345137	13	CON__P13647;P13647;CON__O95678;O95678	KRT5;KRT75	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75	no	no	0	1	1	1	0	1					16.936	16.936	3	0.013089	9031	DP1141_1	78.401	16.992		+	12161000	258	13	246	441	636	636	7	1	9606
DVDDGLQAAEEVGYPVMIK	Oxidation (M)	2063.9721	0.97213685	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.999	20.999	2	3.4634E-73	15302	DP1141_1	190.57	169.83			40701000	259	302	247	442	637;638;639	638	242	3	9606
DVDDGLQAAEEVGYPVMIK	Unmodified	2047.9772	0.97722223	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.852	21.852	2	6.784E-08	16634	DP1141_1	137.46	83.113			0	260	302	247	443	640	640		1	9606
DVDNAYMIK	Oxidation (M)	1083.4907	0.49066067	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1.5	0.5	1	1				16.659	16.659	2	0.017954	8605	DP1141_1	105.14	75.986		+	277000000	261	15	248	444;445	641;642	641	15	2	9606
DVESVQTPSK	Unmodified	1088.535	0.53496832	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.52	14.52	2	6.505199999999999E-46	5290	DP1141_2	190.73	148.85			11404000	262	182	249	446	643;644	643		2	9606
DVESYIHR	Unmodified	1017.488	0.48795855	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	0	1					16.469	16.469	2	1.5332E-18	8358	DP1141_1	160.91	109.95			53519000	263	443	250	447	645	645		0	9606
DVFRDPALKR	Unmodified	1215.6724	0.67240528	222	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	1	0	1					15.91	15.91	3	0.029642	7237	DP1141_1	90.149	28.987			0	264	222	251	448	646	646		1	9606
DVNAAIATIK	Unmodified	1014.571	0.5709599	257;409	P68363;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA1C;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3.5	1.12		1	1	1	1	17.964	17.964	2	0.003065	10946	DP1141_5	121.73	67.765			467690000	265	257;409	252	449;450;451;452	647;648;649;650	650		4	9606
DVQIGDIVTVGECRPLSK	Unmodified	1985.0252	0.025175478	235	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					2	19.705	19.705	2;3	1.9377E-167	13815	DP1141_5	261.17	204.95			318430000	266	235	253	453;454	651;652	652		2	9606
DYHFKVDNDENEHQLSLR	Unmodified	2258.0352	0.035222893	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		17.301	17.301	3	4.2584E-47	10526	DP1141_4	171.78	157.74			24166000	267	80	254	455	653	653		1	9606
DYQELMNTK	Oxidation (M)	1156.507	0.50703901	65	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	0	2.75	1.48	1	1	1		1	15.608	15.608	2	1.3671E-09	6764	DP1141_1	158.07	103.3		+	748360000	268	65	255	456;457;458;459	654;655;656;657;658;659	655	39	6	9606
DYQELMNTK	Unmodified	1140.5121	0.51212439	65	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	1.5	0.5	1	1				17.859	17.859	2	0.0085382	10483	DP1141_1	125.16	58.361		+	76507000	269	65	255	460;461	660;661	660		2	9606
DYQELMNVK	Oxidation (M)	1154.5278	0.52777445	15	CON__P35908v2;CON__P35908;P35908;CON__Q5XKE5;CON__P12035;CON__Q01546;Q5XKE5;P12035;Q01546	KRT2;KRT79;KRT3;KRT76	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral	yes	no	0	1	0	2	1	1		1			16.77	16.77	2	0.018417	8721	DP1141_1	115.49	66.136		+	11700000	270	15	256	462;463	662;663	662	16	2	9606
DYSLLPLLAAAPQVGEK	Unmodified	1783.972	0.97200092	167	P38432	COIL	Coilin	yes	yes	0	0	0	3	0			1			23.496	23.496	2	0.00024621	18982	DP1141_3	103.88	84.914			2254700	271	167	257	464	664	664		1	9606
EAASVPLR	Unmodified	841.46577	0.46576654	364	Q8IYL2	TRMT44	Probable tRNA (uracil-O(2)-)-methyltransferase	yes	yes	0	0	0	5	0					1	16.552	16.552	1	0.00044066	8547	DP1141_5	132.96	27.76			88572000	272	364	258	465	665	665		0	9606
EAFHKQMMGGFKETK	2 Oxidation (M)	1799.8335	0.8334753	476	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	2	2	1	0	1					15.072	15.072	4	0.037086	6201	DP1141_1	40.676	21.687			33963000	273	476	259	466	666	666	381;382	0	9606
EAMEDGEIDGNKVTLDWAKPK	Oxidation (M)	2361.1158	0.11584098	123	P19338	NCL	Nucleolin	yes	yes	0	1	2	3	0			1			18.102	18.102	3	0.0059892	10726	DP1141_3	104.84	79.397			0	274	123	260	467	667	667	135	1	9606
EAPAPVAHPAPGGPEEQWQR	Unmodified	2123.0185	0.018450616	393	Q96KM6	ZNF512B	Zinc finger protein 512B	yes	yes	0	0	0	2	0		1				16.616	16.616	3	0.0098382	8595	DP1141_2	63.443	35.791			20307000	275	393	261	468	668	668		1	9606
EAPPMEKPEVVK	Oxidation (M)	1368.6959	0.69590241	244	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	5	0					1	13.915	13.915	3	0.0046342	4273	DP1141_5	115.29	79.634			31744000	276	244	262	469	669	669	204	0	9606
EAVGDLLDAFK	Unmodified	1176.6027	0.60265396	281	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1.5	0.5	1	1				23.28	23.28	2	0.0032596	18846	DP1141_1	112.41	54.181			131280000	277	281	263	470;471	670;671;672	671		2	9606
EAYPGDVFYLHSR	Unmodified	1552.731	0.73104237	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			19.005	19.005	3	0.0023899	12309	DP1141_3	88.163	69.063			80799000	278	137	264	472	673	673		1	9606
EDGNEEDKENQGDETQGQQPPQR	Unmodified	2627.0968	0.096773109	255	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	3.67	0.471			1	2		13.284	13.284	3	0	3556	DP1141_4	298.42	291.74			143080000	279	255	265	473;474;475	674;675;676;677;678;679;680;681;682	677		9	9606
EDILVTLNDLIKNIPDAK	Unmodified	2023.1201	0.12012172	378	Q8WWK9	CKAP2	Cytoskeleton-associated protein 2	yes	yes	0	0	1	5	0					1	25.508	25.508	3	0.0087833	22377	DP1141_5	67.416	45.103			1297700	280	378	266	476	683	683		1	9606
EDLTEIR	Unmodified	874.43961	0.43961137	76	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		16.553	16.553	2	8.1815E-13	9344	DP1141_4	153.88	80.268			58673000	281	76	267	477	684	684		0	9606
EDLTEIRDMLLANK	Oxidation (M)	1675.8451	0.84508585	76	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	1	1	4	0				1		20.198	20.198	3	0.015762	15104	DP1141_4	100.69	63.32			63362000	282	76	268	478	685	685	55	1	9606
EDLTEIRDMLLANKVPAAAR	Oxidation (M)	2241.1787	0.17871601	76	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	1	2	4	0				2		19.898	19.898	3;4	0.016423	14554	DP1141_4	56.25	44.462			89657000	283	76	269	479;480	686;687	686	55	1	9606
EDLTEIRDMLLANKVPAAAR	Unmodified	2225.1838	0.18380139	76	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	2	4	0				1		20.796	20.796	3	4.7817E-06	15874	DP1141_4	97.502	38.678			15531000	284	76	269	481	688	688		0	9606
EDSTADDSKDSVAQGTTNVHSSEHAGR	Unmodified	2800.2132	0.21319985	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				13.774	13.774	4	1.3626999999999998E-19	4242	DP1141_2	125.79	118.63			10685000	285	182	270	482	689	689		1	9606
EDSVKPGAHLTVK	Unmodified	1379.7409	0.74087877	203	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	3.5	1.5	1			2	1	14.121	14.121	2;3	2.0822E-42	5439	DP1141_4	184.44	112.2			362860000	286	203	271	483;484;485;486	690;691;692;693;694;695	693		6	9606
EEAETPAEATGKPQR	Unmodified	1612.7693	0.76927837	367	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	1	2	0		1				12.832	12.832	3	1.6052E-09	3114	DP1141_2	158.86	140.4			2752800	287	367	272	487	696;697	696		2	9606
EEAISNMVVALK	Oxidation (M)	1318.6803	0.68025235	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					17.759	17.759	2	3.8374E-08	10306	DP1141_1	154.84	106.88			378980000	288	302;31	273	488	698;699	699	23	2	9606
EEEIAALVIDNGSGMCK	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	254	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	2.5	1.5	1			1		23.324	23.324	2	0.00069013	19752	DP1141_4	85.271	49.561			15664000	289	254	274	489;490	700;701;702	702	210	3	9606
EEFLIPIYHQVAVQFADLHDTPGR	Unmodified	2794.4079	0.40786432	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.75	1.79	2			1	1	22.55	22.55	3;4	7.0563000000000005E-78	17763	DP1141_1	181.61	160.87			73577000	290	302	275	491;492;493;494	703;704;705;706;707	705		4	9606
EEGIGPENLR	Unmodified	1112.5462	0.54620171	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					16.942	16.942	1;2	3.2895E-24	8967	DP1141_1	177.3	89.608			259570000	291	302	276	495;496	708;709;710	710		3	9606
EEKAALEKPMDLEEEK	Oxidation (M)	1903.9085	0.90847397	36	O14967	CLGN	Calmegin	yes	yes	0	1	2	3	0			1			18.784	18.784	2	0.023326	11801	DP1141_3	110.08	62.365			0	292	36	277	497	711	711	30	1	9606
EENKSDMNTVLNYIFSHAQVTK	Oxidation (M)	2583.2275	0.22751669	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					20.937	20.937	3;4	1.9224E-32	15434	DP1141_1	158.53	93.505			157740000	293	302	278	498;499	712;713	713	243	2	9606
EESQIPVDEVFFHR	Unmodified	1730.8264	0.82639932	280	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1.67	0.471	1	2				20.031	20.031	2;3	0.0034015	14027	DP1141_1	74.78	50.356			33605000	294	280	279	500;501;502	714;715;716	714		2	9606
EGAFSNFPISEETIK	Unmodified	1667.8043	0.80426689	443;408	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	1	0	1					20.336	20.336	2	0.018846	14550	DP1141_1	76.165	40.669			14812000	295	443;408	280	503	717	717		1	9606
EGGFIVRDSSK	Unmodified	1193.6041	0.60405094	283	Q06187	BTK	Tyrosine-protein kinase BTK	yes	yes	0	0	1	5	0					2	14.779	14.779	2	0.012689	5332	DP1141_5	112.71	39.832			737290000	296	283	281	504;505	718;719	718		0	9606
EGLPLMVFANWR	Oxidation (M)	1447.7282	0.7282056	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.5	1.12	1	1	1	1		22.753	22.753	2	2.0617E-13	18072	DP1141_1	163.15	129.77			165870000	297	302	282	506;507;508;509	720;721;722;723;724;725;726;727	723	244	8	9606
EGLPLMVFANWR	Unmodified	1431.7333	0.73329097	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.67	1.25	1		1	1		23.92	23.92	2	9.086199999999999E-50	19730	DP1141_1	215.88	177.58			47218000	298	302	282	510;511;512	728;729;730;731;732	729		5	9606
EGMNIVEAMER	2 Oxidation (M)	1309.5642	0.56423631	252	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	2	0	5	0					1	15.254	15.254	2	0.03156	6594	DP1141_5	51.276	12.523			9193600	299	252	283	513	733	733	208;209	0	9606
EGSIEIDIPVPK	Unmodified	1295.6973	0.69728262	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.011	20.011	2	0.00010993	13874	DP1141_2	142	98.226			303340000	300	399	284	514;515;516;517	734;735;736;737;738;739;740	736		7	9606
EHALLAYTLGVK	Unmodified	1313.7343	0.73433683	256	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.5	1.5	1			1		19.027	19.027	2	5.0219E-50	13343	DP1141_4	188.91	125.49			57545000	301	256	285	518;519	741;742	742		2	9606
EHHFGSSGMTLHER	Oxidation (M)	1639.7161	0.71613736	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	1	0	2	0		1				13.476	13.476	4	0.0088319	3770	DP1141_2	67.019	53.693			2368800	302	482	286	520	743	743	384	1	9606
EHHFGSSGMTLHER	Unmodified	1623.7212	0.72122274	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				14.719	14.719	4	0.014075	5804	DP1141_2	71.279	56.441			44349000	303	482	286	521	744	744		1	9606
EIAQDFKTDLR	Unmodified	1334.683	0.68302954	259	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	5	0					2	17.212	17.212	2;3	1.0296999999999999E-58	9765	DP1141_5	194.12	132.52			2839500000	304	259	287	522;523	745;746	746		2	9606
EIAQEFKTDLR	Unmodified	1348.6987	0.69867961	345	Q5TEC6	HIST2H3PS2	Histone H3	yes	yes	0	0	1	5	0					1	17.312	17.312	2	5.174E-05	9932	DP1141_5	122.94	57.782			869620000	305	345	288	524	747	747		1	9606
EIFLSQPILLELEAPLK	Unmodified	1952.1234	0.12341618	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3	1.22	1		1	2		24.478	24.478	2;3	2.1225E-278	20263	DP1141_3	250.69	215.79			110320000	306	164;225;226	289	525;526;527;528	748;749;750;751;752;753;754	750		7	9606
EIIDLVLDR	Unmodified	1084.6128	0.61282471	257;409	P68363;Q9BQE3;Q71U36	TUBA1B;TUBA1C;TUBA1A	Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain	no	no	0	0	0	3	0			1			21.406	21.406	2	3.1499E-10	15764	DP1141_3	162.25	79.046			153930000	307	257;409	290	529	755;756	755		2	9606
EILGTAQSVGCNVDGR	Unmodified	1674.7995	0.79953264	146	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.596	17.596	2	5.0433E-266	10281	DP1141_5	256.31	225.24			72279000	308	146	291	530	757;758	757		2	9606
EIQTAVR	Unmodified	815.45012	0.45011648	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q96A08;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	0	5	0					1	13.87	13.87	2	4.5948E-16	4299	DP1141_5	164.78	46.765			25105000	309	47;133;216	292	531	759;760	759		2	9606
EIVHLQAGQCGNQIGAK	Unmodified	1821.9156	0.91556545	258	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3.33	0.471			2	1		16.239	16.239	2;3	3.9398E-169	7830	DP1141_3	186.29	0			329630000	310	258	293	532;533;534	761;762;763;764;765;766;767	762		7	9606
EKLQEEMLQR	Oxidation (M)	1318.6551	0.65510023	85	P08670	VIM	Vimentin	yes	yes	0	1	1	3	0			1			14.553	14.553	3	0.028786	5149	DP1141_3	83.869	39.255			2276700	311	85	294	535	768	768	77	0	9606
EKPQTLPSAVKGDEK	Unmodified	1625.8625	0.86245047	300	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	2	4	0				1		13.955	13.955	3	4.6077E-05	5204	DP1141_4	138.28	94.78			27809000	312	300	295	536	769;770	770		2	9606
EKPYFPIPEEYTFIQNVPLEDR	Unmodified	2723.3483	0.34828376	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				22.201	22.201	3	1.152E-137	17215	DP1141_2	207.1	154.38			182460000	313	272	296	537	771	771		1	9606
EKQDEQVGLPGK	Unmodified	1326.6779	0.67794416	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	1.83	0.687	2	3	1			14.632	14.632	2;3	2.3095E-96	5456	DP1141_2	242.35	197.97			208750000	314	100	297	538;539;540;541;542;543	772;773;774;775;776;777;778;779	774		6	9606
EKVVLMYDEIFMTEDPSKCSPR	2 Oxidation (M)	2705.2387	0.23867501	342	Q5T2E6	C10orf76	UPF0668 protein C10orf76	yes	yes	0	2	2	1	0	1					24.293	24.293	2	0.014384	20267	DP1141_1	46.408	19.973			13930000	315	342	298	544	780	780	299;300	1	9606
ELAEDGYSGVEVR	Unmodified	1422.6627	0.66268803	132	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4.5	0.5				1	1	17.59	17.59	2	1.2494E-104	10321	DP1141_5	228.64	187.19			100590000	316	132	299	545;546	781;782;783	783		3	9606
ELALQITK	Unmodified	914.54368	0.54368251	354	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1	0	1					17.785	17.785	2	0.0070147	10551	DP1141_1	116.9	3.492			6714700	317	354	300	547	784;785	785		2	9606
ELASLSFSGDYSGTR	Unmodified	1588.7369	0.73691561	498				yes	yes	0	0	0	1	0	1					19.236	19.236	2	0.011073	12723	DP1141_1	94.409	22.179	+		15487000	318	498	301	548	786	786		1	9606
ELEPEMEPKAETETKTQTEMEPQPETEPEMEPNPK	Oxidation (M)	4098.8119	0.81193891	398	Q96RN1	SLC26A8	Testis anion transporter 1	yes	yes	0	1	2	3	0			1			26.93	26.93	3	0.0010305	23432	DP1141_3	51.9	39.924			0	319	398	302	549	787	787	332	1	9606
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	Unmodified	3054.4869	0.48691928	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	3	0			1			21.907	21.907	3	0	16546	DP1141_3	280.08	259.4			104260000	320	93	303	550	788;789	788		2	9606
ELFQTPVCTDKPTTHEK	Unmodified	2029.9779	0.97789093	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.215	16.215	3	1.4595E-05	7840	DP1141_2	116.58	84.898			14350000	321	182	304	551	790	790		0	9606
ELIPNIPFQMLLR	Oxidation (M)	1598.8854	0.88543452	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	1.41	1	1	1	1	1	23.145	23.145	2	0.00061599	18441	DP1141_3	118.03	92.022			689600000	322	101	305	552;553;554;555;556	791;792;793;794;795;796	794	118	6	9606
ELIPNIPFQMLLR	Unmodified	1582.8905	0.8905199	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				24.13	24.13	2	0.00054911	19987	DP1141_2	112.36	88.268			53268000	323	101	305	557	797	797		1	9606
ELLADQNLK	Unmodified	1042.5659	0.56587452	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.6	1.36	1	2	1		1	16.843	16.843	1;2	7.616200000000001E-71	9058	DP1141_5	201.07	60.09			5661300000	324	316	306	558;559;560;561;562	798;799;800;801;802;803	803		6	9606
ELLITDLLPDNR	Unmodified	1410.7718	0.77184455	280	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				22.494	22.494	2	0.00075564	17627	DP1141_2	118.4	67.952			15607000	325	280	307	563	804;805	805		2	9606
ELNEALELKDAQAGKEPGGSR	Unmodified	2211.1131	0.11313886	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	2	3.5	0.5			1	1		16.488	16.488	3	1.7206999999999998E-32	9334	DP1141_4	163.15	125.68			107420000	326	67	308	564;565	806;807;808	807		3	9606
ELQCLTPR	Unmodified	1015.5121	0.51206481	290	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	4	0				1		16.241	16.241	2	0.036174	8736	DP1141_4	89.55	46.55			16540000	327	290	309	566	809	809		1	9606
ELYLSHNGIEVIEGLENNNK	Unmodified	2284.1335	0.13353995	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		20.796	20.796	3	0.00049385	15808	DP1141_4	78.794	41.682			52660000	328	330	310	567	810	810		0	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	2 Oxidation (M)	2851.2753	0.27527152	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	0	2.6	0.8		3	1	1		17.098	17.098	2;3;4	9.0266E-39	9289	DP1141_3	151.85	134.83			1814799999.9999998	329	316	311	568;569;570;571;572	811;812;813;814;815;816;817;818;819;820;821;822	818	278;279	12	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	Oxidation (M)	2835.2804	0.2803569	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.6	0.8		3	1	1		17.891	17.891	2;3;4	2.9371E-188	10776	DP1141_2	215.37	193			1253300000	330	316	311	573;574;575;576;577	823;824;825;826;827;828;829;830;831;832;833	825	278;279	11	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	Unmodified	2819.2854	0.28544228	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			18.601	18.601	3	0	11805	DP1141_2	258.83	246.83			280840000	331	316	311	578;579	834;835;836;837;838	834		5	9606
EMVVFPLLYPEVFEK	Oxidation (M)	1854.9478	0.94776	350	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	1	0	2	0		1				23.964	23.964	2	0.0015612	19704	DP1141_2	116.03	67.077			6548400	332	350	312	580	839;840;841	840	308	3	9606
ENFQNWLK	Unmodified	1077.5243	0.52434406	165	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	19.701	19.701	2	0.00066045	13876	DP1141_5	138.37	22.117			14268000	333	165	313	581	842	842		1	9606
ENNVDAVHPGYGFLSER	Unmodified	1902.886	0.88603946	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	5	0					1	18.614	18.614	3	0.0098641	12127	DP1141_5	64.454	49.759			68909000	334	101	314	582	843	843		1	9606
ENPVLDVVSNPEQTAGEER	Unmodified	2081.9865	0.98654137	297	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	2	0		1				22.201	22.201	2	0.0089324	17352	DP1141_2	72.815	45.261			9102600	335	297	315	583	844	844		1	9606
EPHMLFDRIR	Oxidation (M)	1328.6659	0.66593969	439	Q9NP99	TREM1	Triggering receptor expressed on myeloid cells 1	yes	yes	0	1	1	3	0			1			14.969	14.969	3	0.034828	5874	DP1141_3	80.755	51.957			2485700	336	439	316	584	845	845	363	0	9606
EPQVYVLAPPQEELSK	Unmodified	1825.9462	0.9461801	3	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3.33	1.25		1	1		1	19.701	19.701	2	1.5447000000000001E-63	13266	DP1141_3	190.34	151.16		+	351980000	337	3	317	585;586;587	846;847;848;849;850;851	849		6	
EQEPMPTVDSHEPR	Oxidation (M)	1666.7257	0.72569899	432	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	1	0	5	0					1	14.266	14.266	3	0.0054163	4957	DP1141_5	79.614	63.391			8187000	338	432	318	588	852	852	358	1	9606
EQIVPKPEEEVAQK	Unmodified	1622.8516	0.85155143	121	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					2	15.634	15.634	2;3	1.1782E-85	7188	DP1141_5	194.39	136.8			167660000	339	121	319	589;590	853;854	854		2	9606
EQIVPKPEEEVAQKK	Unmodified	1750.9465	0.94651445	121	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	2	5	0					1	14.867	14.867	3	1.5122E-06	5891	DP1141_5	118.76	97.305			18391000	340	121	320	591	855	855		0	9606
EQLGEEIDSK	Unmodified	1146.5404	0.54044763	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	0	1					16.033	16.033	2	0.0017879	7405	DP1141_1	145.46	76.614			16955000	341	443	321	592	856	856		1	9606
EQLSQAEAMKAPELKEK	Oxidation (M)	1944.9826	0.98264196	426	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	1	2	2	0		1				15.119	15.119	4	0.037021	6546	DP1141_2	47.639	14.279			3440700	342	426	322	593	857	857	357	0	9606
EREEFLIPIYHQVAVQFADLHDTPGR	Unmodified	3079.5516	0.55156844	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1				21.836	21.836	4	0.0007854	16692	DP1141_2	80.68	55.717			6533900	343	302	323	594	858	858		1	9606
ERPGEQSEVAQLIQQTLEQER	Unmodified	2467.2303	0.23029389	400	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				21.901	21.901	3	3.4646E-08	16702	DP1141_2	119.27	98.591			24634000	344	400	324	595	859	859		1	9606
ERPQDRPEDLDVPPALADFIHQQR	Unmodified	2841.4158	0.41580324	273	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	2	2	0		1				20.4	20.4	4	3.1149E-07	14433	DP1141_2	82.593	61.029			10190000	345	273	325	596	860	860		0	9606
ERVEAVNMAEGIIHDTETK	Oxidation (M)	2157.0372	0.037196727	168	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			17.844	17.844	3	0.014607	10246	DP1141_3	72.968	61.608			5065800	346	168	326	597	861	861	156	1	9606
ESDDARAEMLVGLMMDYNNILFVLQK	3 Oxidation (M)	3062.4399	0.43989401	497				yes	yes	0	3	1	3	0			1			29.016	29.016	3	0.038634	26018	DP1141_3	42.612	25.812	+		0	347	497	327	598	862	862	394	1	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	Oxidation (M)	3342.5166	0.51664078	312	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	1	0	3.5	0.5			1	1		20.26	20.26	3	7.7949E-06	14200	DP1141_3	61.033	49.751			26748000	348	312	328	599;600	863;864	863	276	2	9606
ESLCQAALGLILK	Unmodified	1414.7854	0.78538612	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		23.472	23.472	2	6.7901E-05	19099	DP1141_1	137.46	93.808			274750000	349	399	329	601;602;603	865;866;867;868;869	865		5	9606
ESTLHLVLR	Unmodified	1066.6135	0.61349341	92	P62987;P62979;P0CG47;P0CG48;A0A2R8Y422	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	2.67	1.25	1		1	1		17.659	17.659	2	7.7324E-19	10083	DP1141_3	178.99	120.01			211340000	350	92	330	604;605;606	870;871;872	871		3	9606
ESYSVYVYK	Unmodified	1136.539	0.53899107	47;216	P57053;O60814;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	0	5	0					1	17.898	17.898	2	0.01793	10959	DP1141_5	104.75	57.089			2514200000	351	47;216	331	607	873;874	874		2	9606
ETFDDLPKWMKMIDK	2 Oxidation (M)	1927.906	0.90597154	348	Q6IQ22	RAB12	Ras-related protein Rab-12	yes	yes	0	2	2	2	0		1				20.154	20.154	2	0.030721	13639	DP1141_2	46.955	7.3748			10786000	352	348	332	608	875;876	875	305;306	2	9606
ETGGFSQEELLK	Unmodified	1336.6511	0.65106071	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		18.499	18.499	2	1.6419E-51	11567	DP1141_2	235.66	165.41			430700000	353	316	333	609;610;611	877;878;879	877		2	9606
ETGYVVERPSTTK	Unmodified	1465.7413	0.7412727	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2.5	0.5		1	1			14.807	14.807	3	1.0298E-06	5811	DP1141_2	137.01	101.01			100910000	354	456	334	612;613	880;881	880		1	9606
EVATNSELVQSGK	Unmodified	1360.6834	0.68342347	5	CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;Q04695	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	yes	no	0	0	0	3	2	1				1	15.232	15.232	2	3.212E-23	6475	DP1141_5	167.12	90.637		+	73180000	355	5	335	614;615	882;883;884	883		3	9606
EVDEQMLNVQNK	Oxidation (M)	1461.677	0.67695789	81;258;312	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	5	0					1	15.553	15.553	2	1.3772000000000001E-31	7072	DP1141_5	164.68	107.34			130390000	356	81;258;312	336	616	885	885	67	0	9606
EVFFMNTQSIVQLVQR	Oxidation (M)	1953.9982	0.99823245	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					22.035	22.035	2;3	1.2380000000000001E-127	16902	DP1141_1	233.52	206.74			364240000	357	302	337	617;618	886;887	887	245	2	9606
EVFFMNTQSIVQLVQR	Unmodified	1938.0033	0.003317824	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					23.244	23.244	2;3	5.7211E-05	18776	DP1141_1	113.37	49.678			9634200	358	302	337	619;620	888;889;890	888		3	9606
EVLCPESQSPNGVR	Unmodified	1570.741	0.74095513	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.5	1.12		1	1	1	1	16.129	16.129	2	0	7825	DP1141_2	275.13	208.21			1642299999.9999998	359	316	338	621;622;623;624	891;892;893;894;895;896;897;898;899	891		9	9606
EVPAVPETLKK	Unmodified	1209.6969	0.69688869	119	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.776	15.776	3	0.028609	8101	DP1141_4	69.672	51.613			63133000	360	119	339	625	900	900		1	9606
EVQTNDLKEVVNK	Unmodified	1514.794	0.79403655	220	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		15.97	15.97	3	0.0061099	8510	DP1141_4	98.156	59.197			202290000	361	220	340	626	901	901		1	9606
EVVVYAPLSK	Unmodified	1103.6227	0.62266112	446	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				18.13	18.13	2	0.02808	11146	DP1141_2	102.62	56.196			14197000	362	446	341	627	902	902		1	9606
EVYQQQQYGSGGR	Unmodified	1498.6801	0.68006943	406	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	4.5	0.5				1	1	14.948	14.948	2	1.7139E-11	6876	DP1141_4	155.26	123.63			99204000	363	406	342	628;629	903;904	903		2	9606
EYEAEGIAKDGAK	Unmodified	1379.6569	0.65687437	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			14.507	14.507	3	0.016143	4925	DP1141_3	126.12	81.693			7552500	364	436	343	630	905	905		0	9606
EYMSTGSDNKEEIDLLIK	Acetyl (Protein N-term);Oxidation (M)	2142.0038	0.0038309135	177	P41279	MAP3K8	Mitogen-activated protein kinase kinase kinase 8	yes	yes	1	1	1	3	0			1			14.056	14.056	3	0.026777	4522	DP1141_3	45.883	13.517			2080400	365	177	344	631	906	906	164	1	9606
EYQELMNTK	Unmodified	1154.5278	0.52777445	13	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					16.64	16.64	2	0.035242	8480	DP1141_1	101.25	70.641		+	0	366	13	345	632	907	907		1	9606
FAAGHDAEGSHSHVHFDEK	Unmodified	2076.9038	0.90381479	421	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					3	14.157	14.157	3;4;5	3.4767E-13	4789	DP1141_5	193.3	164.95			141520000	367	421	346	633;634;635	908;909;910;911;912	910		4	9606
FADGEVVR	Unmodified	891.44503	0.4450311	320	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					15.738	15.738	2	0.0068775	6978	DP1141_1	116.54	39.768			30033000	368	320	347	636	913	913		1	9606
FANPFPAAVR	Unmodified	1088.5767	0.57671398	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.816			1	1	1	19.249	19.249	2	0.002061	12619	DP1141_3	125.25	82.856			187930000	369	73	348	637;638;639	914;915;916;917	915		4	9606
FDTPFLPK	Unmodified	963.50657	0.50656873	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.67	1.25		1		1	1	19.894	19.894	2	1.7083E-10	13805	DP1141_2	162.31	51.694			246790000	370	316	349	640;641;642	918;919;920;921;922	920		5	9606
FDTPFLPKPLFFR	Unmodified	1623.8813	0.88133542	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.5	1.12		1	1	1	1	22.458	22.458	3	4.6819E-18	17443	DP1141_3	163.46	128.43			90837000	371	316	350	643;644;645;646	923;924;925;926	924		4	9606
FEIVYNLLSLR	Unmodified	1365.7656	0.76563696	51	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	5	0					1	23.429	23.429	2	0.012143	19353	DP1141_5	100.88	55.742			0	372	51	351	647	927	927		1	9606
FELSGIPPAPR	Unmodified	1182.6397	0.63970816	93;114	P0DMV8;P0DMV9;P17066	HSPA1A;HSPA1B;HSPA6	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6	no	no	0	0	0	3	0			1			19.105	19.105	2	0.004084	12467	DP1141_3	134.77	62.536			39799000	373	93;114	352	648	928	928		1	9606
FELTGIPPAPR	Unmodified	1196.6554	0.65535823	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			19.747	19.747	2	0.027376	14086	DP1141_3	91.853	11.415			1534099999.9999998	374	98	353	649;650	929;930	929		1	9606
FEMEQNLR	Oxidation (M)	1081.4862	0.48624399	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	0		1				15.119	15.119	2	7.6672E-10	6358	DP1141_2	158.12	113.42		+	20625000	375	14	354	651	931	931	9	1	9606
FEPYANPTKR	Unmodified	1221.6142	0.6142217	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	5	0					1	15.143	15.143	3	0.020723	6403	DP1141_5	80.231	52.367			6977600	376	204	355	652	932;933	933		2	9606
FESPEVAER	Unmodified	1062.4982	0.49818889	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	4	1			1		1	15.998	15.998	2	0.0075155	7286	DP1141_3	116.25	61.474			97443000	377	204	356	653;654	934;935;936	934		3	9606
FFEVILIDPFHK	Unmodified	1503.8126	0.81258715	221	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					2	23.037	23.037	2;3	1.3938E-05	18709	DP1141_5	174.41	151.73			25738000	378	221	357	655;656	937;938;939	937		3	9606
FFTTPSK	Unmodified	826.4225	0.42250475	56	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			16.112	16.112	2	0.0031776	7448	DP1141_3	115.46	74.773			29841000	379	56	358	657	940	940		1	9606
FFVAPFPEVFGK	Unmodified	1383.7227	0.72270951	6	CON__P02662			yes	yes	0	0	0	2.5	1.12	1	1	1	1		23.105	23.105	2	0.0010974	18340	DP1141_3	136.63	111.76		+	221880000	380	6	359	658;659;660;661	941;942;943;944;945;946;947	944		7	
FGDPVVQSDMKHWPFQVINDGDKPK	Oxidation (M)	2899.3963	0.39631336	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	1	2	3	0			1			19.073	19.073	4	0.0051554	12316	DP1141_3	51.857	30.293			21289000	381	93	360	662	948	948	100	1	9606
FGEVVDCTLK	Unmodified	1166.5642	0.56415996	313	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		17.695	17.695	2	0.03545	11298	DP1141_4	100.02	0			369200000	382	313	361	663	949	949		1	9606
FGLNVSSISR	Unmodified	1078.5771	0.57710791	265	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	4	0				1		18.876	18.876	2	0.0012691	13064	DP1141_4	140.35	99.471			0	383	265	362	664	950	950		1	9606
FGQGVHHAAGQAGNEAGR	Unmodified	1762.8248	0.82477661	351	Q6UWP8	SBSN	Suprabasin	yes	no	0	0	0	3	1.67	1	2			2	13.226	13.226	3;4	0.0002719	4093	DP1141_2	97.073	68.713			15620000	384	351	363	665;666;667;668;669	951;952;953;954;955;956	952		6	9606
FGTGGAAVPEK	Unmodified	1032.524	0.52400971	315	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				15.219	15.219	2	0.032503	6385	DP1141_2	84.817	19.571			76318000	385	315	364	670	957	957		1	9606
FHFIDIYLDELSK	Unmodified	1638.8294	0.82935943	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	0.471		2	1			22.908	22.908	2;3	7.7636E-33	18272	DP1141_2	196.88	144.63			373990000	386	316	365	671;672;673	958;959;960;961;962;963	960		5	9606
FHSPPDKDEAEAPSQK	Unmodified	1781.822	0.82204222	122	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	1	3	0			1			13.802	13.802	3	0.0027161	3697	DP1141_3	96.489	67.71			5167600	387	122	366	674	964;965	964		2	9606
FIEENKEK	Unmodified	1035.5237	0.52367535	448	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	1	0	1					17.219	17.219	2	0.0047715	9446	DP1141_1	117.16	32.662			0	388	448	367	675	966	966		1	9606
FIEIAAR	Unmodified	818.46504	0.46503826	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				17.296	17.296	2	0.029771	9784	DP1141_2	127.66	65.319			58415000	389	272	368	676	967	967		0	9606
FIGPSPEVVR	Unmodified	1099.6026	0.60259438	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		17.719	17.719	2	5.4616E-06	10344	DP1141_1	154.12	95.685			1197500000	390	101	369	677;678;679;680	968;969;970;971;972	969		5	9606
FIGPSPEVVRK	Unmodified	1227.6976	0.69755739	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.67	1.7	1	1			1	16.127	16.127	3	2.8194E-07	7783	DP1141_1	154.84	87.881			63325000	391	101	370	681;682;683	973;974;975;976;977	974		5	9606
FIHDQTSPNPK	Unmodified	1282.6306	0.63060004	208	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		12.96	12.96	3	0.010403	3841	DP1141_4	94.363	80.119			1364700	392	208	371	684	978	978		1	9606
FIIGSVSEDNSEDEISNLVK	Unmodified	2194.0641	0.064122984	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.537	21.537	2	1.9634E-55	16318	DP1141_1	218.11	188.31			90167000	393	302	372	685	979;980	980		2	9606
FITDNTVEER	Unmodified	1222.583	0.58298115	44	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1.5	0.5	1	1				16.616	16.616	2	0.0028949	8620	DP1141_2	122.33	51.804			70395000	394	44	373	686;687	981;982	982		2	9606
FKEANNFLWPFK	Unmodified	1539.7874	0.78743503	119	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		21.297	21.297	2	6.614E-09	16704	DP1141_4	141.1	66.922			12737000	395	119	374	688	983	983		0	9606
FLEEFITPIVK	Unmodified	1334.7486	0.74858991	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	3	0			1			22.102	22.102	2	0.0012502	16883	DP1141_3	128.6	87.176			11593000	396	100	375	689	984	984		1	9606
FLEQQNQVLETK	Unmodified	1475.762	0.76200815	18	CON__Q32MB2;Q86Y46;CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;CON__Q7RTS7;Q14CN4;Q3SY84;Q7RTS7	KRT73;KRT72;KRT71;KRT74	Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74	yes	no	0	0	0	1.33	0.471	2	1				17.58	17.58	2	2.7587E-05	10286	DP1141_2	147.3	43.103		+	16613000	397	18	376	690;691;692	985;986;987	987		3	9606
FLEQQNQVLQTK	Unmodified	1474.778	0.77799256	65;15;21	CON__P35908v2;CON__P35908;P35908;CON__Q9R0H5;CON__Q7Z794;Q7Z794;P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253;CON__Q6IFZ6;CON__Q6NXH9	KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	no	no	0	0	0	2.75	1.48	1	1	1		1	17.318	17.318	2	1.4033999999999999E-214	9548	DP1141_3	247.96	175.35		+	3582099999.9999995	398	15;65;21	377	693;694;695;696	988;989;990;991;992;993	991		6	9606
FLHKHDLDLICR	Unmodified	1565.8137	0.81366656	164;225	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	1	3.75	0.829			2	1	1	17.156	17.156	2;3	3.6629E-09	10394	DP1141_4	156.01	125.28			1155200000	399	164;225	378	697;698;699;700	994;995;996;997;998;999	997		6	9606
FLILPDMLK	Unmodified	1088.6304	0.63038903	238	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	22.434	22.434	2	0.024781	17963	DP1141_5	93.162	54.371			18598000	400	238	379	701	1000	1000		1	9606
FLNVLSPR	Unmodified	944.54435	0.54435122	117	P17936	IGFBP3	Insulin-like growth factor-binding protein 3	yes	yes	0	0	0	4.5	0.5				1	1	18.982	18.982	2	0.0058704	13202	DP1141_4	113.89	59.732			156420000	401	117	380	702;703	1001;1002;1003	1001		3	9606
FLSDVYPDGFK	Unmodified	1286.6183	0.61830402	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.003	20.003	2	6.0151E-76	13696	DP1141_3	206.43	139.26			49831000	402	72	381	704	1004	1004		1	9606
FLSPPALQGYVAWLR	Unmodified	1716.9352	0.9351619	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				23.71	23.71	2	4.1267E-15	19419	DP1141_2	152.54	122.61			9290100	403	410	382	705	1005;1006	1006		2	9606
FLYDDNQR	Unmodified	1069.4829	0.48287317	100;277	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	1.5	0.5	1	1				16.914	16.914	2	0.00036237	9133	DP1141_2	143.02	100.11			165920000	404	100;277	383	706;707	1007;1008;1009	1009		3	9606
FLYECPWR	Unmodified	1169.5328	0.53280025	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				20.118	20.118	2	2.6413E-32	14155	DP1141_2	184.16	144.06			661460000	405	101	384	708;709	1010;1011	1011		2	9606
FLYIWPNAR	Unmodified	1178.6237	0.62366417	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		21.435	21.435	2	1.1136E-22	15915	DP1141_3	174.64	131.52			589310000	406	436	385	710;711;712;713	1012;1013;1014;1015;1016;1017;1018	1015		7	9606
FMNAVFFLLPK	Oxidation (M)	1341.7155	0.71551564	263	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22.919	22.919	2	0.021891	18237	DP1141_1	98.033	58.411			0	407	263	386	714	1019	1019	222	1	9606
FNADEFEDMVAEK	Oxidation (M)	1559.645	0.64498906	139	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	5	0					1	19.035	19.035	2	0.0022342	12624	DP1141_5	124.39	86.299			28527000	408	139	387	715	1020;1021	1020	145	2	9606
FNADEFEDMVAEKR	Oxidation (M)	1715.7461	0.74610008	139	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	5	0					1	18.297	18.297	3	0.003354	11658	DP1141_5	88.224	64.393			33196000	409	139	388	716	1022	1022	145	1	9606
FPGQLNADLR	Unmodified	1129.588	0.58800695	81;258;312;308	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3;TUBB1	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-1 chain	no	no	0	0	0	3.5	1.12		1	1	1	1	18.299	18.299	2	8.4972E-24	12231	DP1141_4	172.25	114.02			1646299999.9999998	410	81;258;312;308	389	717;718;719;720	1023;1024;1025;1026;1027;1028;1029;1030;1031;1032	1029		9	9606
FPGQLNADLRK	Unmodified	1257.683	0.68296996	81;258;312;308	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3;TUBB1	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-1 chain	no	no	0	0	1	3.33	0.471			2	1		16.75	16.75	2;3	0.0040575	9590	DP1141_4	145.46	69.361			579630000	411	81;258;312;308	390	721;722;723	1033;1034;1035;1036	1036		4	9606
FPLTTESAMK	Unmodified	1123.5583	0.5583463	240	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	17.698	17.698	2	0.012372	10616	DP1141_5	99.136	49.694			33845000	412	240	391	724	1037	1037		0	9606
FPLTTESAMKK	Oxidation (M)	1267.6482	0.64822394	240	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	1	1	5	0					2	15.327	15.327	2;3	0.029101	6281	DP1141_5	89.047	47.621			17878000	413	240	392	725;726	1038;1039	1039	200	2	9606
FPSLLTHNENMVAK	Oxidation (M)	1615.8028	0.8028271	248	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					1	17.598	17.598	3	0.021827	10066	DP1141_5	63.181	28.104			343540000	414	248	393	727	1040;1041	1040	207	2	9606
FQAQSLGTTYIYDIPEMFR	Oxidation (M)	2295.0882	0.088169665	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					22.41	22.41	2;3	1.2026E-72	17476	DP1141_1	185.66	154.44			152750000	415	302	394	728;729	1042;1043;1044	1042	246	3	9606
FQAQSLGTTYIYDIPEMFR	Unmodified	2279.0933	0.093255043	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.713	23.713	2	1.8005E-47	19449	DP1141_1	173.59	128.77			5832100	416	302	394	730	1045	1045		1	9606
FQRPGDPQSAQDK	Unmodified	1472.7008	0.70080487	332	Q15637	SF1	Splicing factor 1	yes	yes	0	0	1	3	0			1			14.056	14.056	3	0.0084066	4403	DP1141_3	92.151	63.92			6607300	417	332	395	731	1046;1047	1047		2	9606
FQSIVIGCALEDQKK	Unmodified	1734.8975	0.89745577	62	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	1	5	0					2	18.587	18.587	2;3	0.0021	12080	DP1141_5	104.9	72.61			93123000	418	62	396	732;733	1048;1049	1048		2	9606
FREDHPDLIQNAK	Unmodified	1581.79	0.78995423	115	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	2	0		1				15.624	15.624	3	0.013292	6885	DP1141_2	77.279	30.09			57962000	419	115	397	734	1050	1050		1	9606
FSWFVDDVEVNTATTKPR	Unmodified	2111.0324	0.032369346	3	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	1	3	0.816		1	1	1		20.701	20.701	3	1.3463E-47	15752	DP1141_4	176.08	152.18		+	112840000	420	3	398	735;736;737	1051;1052;1053	1053		3	
FTQTSGETTDADKEPAGEDK	Unmodified	2125.9288	0.92875171	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.75	0.829		2	1	1		14.129	14.129	2;3	1.0178E-115	4828	DP1141_2	202.32	144.8			164960000	421	182	399	738;739;740;741	1054;1055;1056;1057;1058;1059;1060;1061	1058		8	9606
FTQTSGETTDADKEPAGEDKGIK	Unmodified	2424.1292	0.12924244	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				14.426	14.426	4	3.6658E-08	5228	DP1141_2	99.409	78.353			13553000	422	182	400	742	1062	1062		1	9606
FVADGIFK	Unmodified	895.48035	0.48035398	132	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		19.196	19.196	2	0.034214	13589	DP1141_4	102.77	58.657			140500000	423	132	401	743	1063	1063		1	9606
FVINYDYPNSSEDYIHR	Unmodified	2130.9647	0.96468371	116	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.504	19.504	3	0.0017467	13073	DP1141_3	84.14	68.296			82445000	424	116	402	744	1064	1064		1	9606
FVINYDYPNSSEDYVHR	Unmodified	2116.949	0.94903365	383	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			19.205	19.205	3	0.00060291	12553	DP1141_3	95.236	69.65			15926000	425	383	403	745	1065	1065		1	9606
FVMEVEVDGQK	Oxidation (M)	1295.6068	0.60675306	299;401	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	1	0	2	0		1				16.509	16.509	2	0.0030165	8462	DP1141_2	126.07	91.815			0	426	299;401	404	746	1066	1066	237	1	9606
FVTPSEPVAHSR	Unmodified	1325.6728	0.67279921	35	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	0	1	0	1					15.358	15.358	3	0.00045683	6368	DP1141_1	128.88	105.85			40160000	427	35	405	747	1067;1068	1068		2	9606
FVVMVTPEDLK	Oxidation (M)	1292.6686	0.66862503	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	2.5	1.12	1	1	1	1		19.348	19.348	2	8.168E-05	12998	DP1141_1	148.52	90.664			499040000	428	302;31	406	748;749;750;751	1069;1070;1071;1072;1073;1074	1070	24	5	9606
FVVMVTPEDLK	Unmodified	1276.6737	0.67371041	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					20.336	20.336	2	9.8793E-92	14410	DP1141_1	207.29	153.51			312950000	429	302;31	406	752	1075;1076	1075		2	9606
FVVPKPR	Unmodified	841.51741	0.51740818	270	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	1	0	1					15.439	15.439	2	6.4741E-06	6511	DP1141_1	148.12	101.77			24064000	430	270	407	753	1077	1077		1	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	Unmodified	3101.4003	0.40027234	81	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			1			20.504	20.504	4	0.00059019	14612	DP1141_3	74.841	42.8			15366000	431	81	408	754	1078;1079	1079		2	9606
FYSVNVDYSK	Unmodified	1220.5714	0.57135383	26	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	4	0				1		18.151	18.151	2	0.012155	11924	DP1141_4	106.88	56.841			0	432	26	409	755	1080	1080		1	9606
FYTLIPHDFGMK	Unmodified	1467.7221	0.72205759	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				20.504	20.504	2	0.0047225	14689	DP1141_2	163.38	97.917			0	433	89	410	756	1081	1081		1	9606
GAEAANVTGPDGVPVEGSR	Unmodified	1781.8544	0.85440498	113	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	3.5	0.5			1	1		16.734	16.734	2	1.7862E-05	8627	DP1141_3	151.66	113.97			53787000	434	113	411	757;758	1082;1083	1082		2	9606
GAEAANVTGPGGVPVQGSK	Unmodified	1694.8588	0.85876208	255	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	3.5	0.5			1	1		15.941	15.941	2	0	8418	DP1141_4	260.08	224.37			178800000	435	255	412	759;760	1084;1085;1086;1087	1086		4	9606
GAEGLGEEGGLHQDPLR	Unmodified	1733.8333	0.83327561	462	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	3	0			1			17.104	17.104	3	0.038441	9019	DP1141_3	51.147	15.344			13067000	436	462	413	761	1088	1088		1	9606
GAEHITTYTFNTHK	Unmodified	1618.774	0.77396981	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4.33	0.471				2	1	15.757	15.757	3;4	0	8084	DP1141_4	248.67	217.67			689480000	437	357	414	762;763;764	1089;1090;1091	1089		2	9606
GALQYLVPILTQTLTK	Unmodified	1758.0291	0.029121869	321	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		2				24.802	24.802	2;3	0.012552	21008	DP1141_2	72.958	58.179			5996100	438	321	415	765;766	1092;1093	1093		2	9606
GALTGGYYDTR	Unmodified	1172.5462	0.54620171	478	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	2	0		1				16.899	16.899	2	0.028735	9079	DP1141_2	89.029	59.222			17714000	439	478	416	767	1094	1094		1	9606
GANAVGYTNYPDNVVFK	Unmodified	1827.8792	0.87916317	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				19.387	19.387	2	2.6169E-41	13031	DP1141_2	225.79	146.3			0	440	101	417	768	1095	1095		1	9606
GATYGKPVHHGVNQLK	Unmodified	1704.906	0.90598704	221	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	1	1	0	2					12.839	12.839	3;4	5.5165E-16	2839	DP1141_1	154.1	110.5			14857000	441	221	418	769;770	1096;1097;1098;1099;1100	1099		5	9606
GAVDALAAALAHISGASSFEPR	Unmodified	2110.0807	0.080716522	408	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				23.787	23.787	3	1.4499E-71	19514	DP1141_2	185.2	158.23			49606000	442	408	419	771	1101	1101		1	9606
GAVDGGLSIPHSTK	Unmodified	1337.6939	0.69392858	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		16.259	16.259	3	0.0040616	8906	DP1141_4	73.415	44.352			60515000	443	185	420	772	1102	1102		1	9606
GAVEALAAALAHISGATSVDQR	Unmodified	2107.1022	0.10218025	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1.67	0.471	1	2				23.536	23.536	2;3	4.2844E-100	19164	DP1141_2	193.96	146.04			39570000	444	443	421	773;774;775	1103;1104;1105;1106;1107	1107		5	9606
GAVEIIFK	Unmodified	875.51165	0.5116541	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.205	19.205	2	0.0025073	12482	DP1141_3	133.81	9.2184			243410000	445	73	422	776	1108	1108		1	9606
GCGTVLLSGPR	Unmodified	1115.5757	0.5757277	284	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	17.025	17.025	2	0.027498	9622	DP1141_5	92.051	37.44			114790000	446	284	423	777	1109	1109		1	9606
GDATVSYEDPPTAK	Unmodified	1449.6624	0.66235368	274	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	2.5	0.5		1	1			15.918	15.918	2	2.3823E-23	7470	DP1141_2	208.15	138.09			222240000	447	274	424	778;779	1110;1111;1112;1113	1111		4	9606
GDEELDSLIK	Unmodified	1117.5503	0.55028404	90	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	19.136	19.136	2	0.0023954	12948	DP1141_5	143.73	75.753			155160000	448	90	425	780	1114;1115;1116	1114		3	9606
GDGPICLVLAPTR	Unmodified	1367.7231	0.72312022	116;383	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3	0			1			20.304	20.304	2	5.9736E-11	14190	DP1141_3	152.64	120.32			83982000	449	116;383	426	781	1117	1117		1	9606
GDSVIVVLR	Unmodified	956.56548	0.56548059	237	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	18.584	18.584	2	0.0059129	12074	DP1141_5	113.5	68.778			74606000	450	237	427	782	1118;1119	1119		2	9606
GEATVSFDDPPSAK	Unmodified	1419.6518	0.65178899	161	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	yes	no	0	0	0	3	0			1			17.006	17.006	2	6.4959E-55	8971	DP1141_3	201.09	157.81			0	451	161	428	783	1120	1120		1	9606
GEEGHDPKEPEQLR	Unmodified	1619.754	0.75396265	203	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		13.526	13.526	3	0.028125	4691	DP1141_4	54.276	37.057			6352500	452	203	429	784	1121	1121		1	9606
GEGAGQPSTSAQGQPAAPAPQK	Unmodified	2033.9766	0.97664538	207	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	0	5	0					1	14.266	14.266	2	3.5796000000000002E-84	5037	DP1141_5	188.19	139.68			5084200	453	207	430	785	1122	1122		1	9606
GEGAGQPSTSAQGQPAAPAPQKR	Unmodified	2190.0778	0.077756409	207	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	1	5	0					1	13.73	13.73	3	3.8871999999999996E-50	3069	DP1141_5	164.5	144.02			4559800	454	207	431	786	1123;1124;1125;1126	1123		4	9606
GEPGAAPLSAPAFSLVFPFLK	Unmodified	2115.1405	0.14046323	381	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	2	0		1				25.182	25.182	2	0.012707	21608	DP1141_2	74.296	45.507			2909000	455	381	432	787	1127	1127		1	9606
GFAFVQYVNER	Unmodified	1328.6513	0.65133548	83	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.276	20.276	2	0.024642	15179	DP1141_4	146.69	95.634			0	456	83	433	788	1128	1128		1	9606
GFAFVTFDDHDSVDKIVIQK	Unmodified	2280.1426	0.14264808	88	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	5	0					1	20.472	20.472	3	0.010021	14908	DP1141_5	74.726	11.179			13905000	457	88	434	789	1129	1129		1	9606
GFAFVTFDDHDTVDKIVVQK	Unmodified	2280.1426	0.14264808	203	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		20.297	20.297	3	0.019886	15270	DP1141_4	71.697	22.986			221450000	458	203	435	790	1130	1130		1	9606
GFCFITYTDEEPVKK	Unmodified	1832.8655	0.86548694	37	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	1	4	0				1		19.296	19.296	3	5.5453E-39	13751	DP1141_4	171.99	148.16			18986000	459	37	436	791	1131	1131		1	9606
GFGFVDFNSEEDAK	Unmodified	1560.6733	0.67325272	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	3.5	1.5		1			1	20.686	20.686	2	2.1349E-253	15357	DP1141_5	250.92	202.32			271110000	460	123	437	792;793	1132;1133	1133		2	9606
GFGFVLFK	Unmodified	913.50617	0.5061748	313;37	Q14103;O14979	HNRNPD;HNRNPDL	Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like	no	no	0	0	0	4	0				1		22.197	22.197	2	0.03612	18030	DP1141_4	89.673	56.18			56392000	461	313;37	438	794	1134	1134		1	9606
GFGFVTFDDHDPVDK	Unmodified	1694.7577	0.75765105	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				2		20.098	20.098	2;3	8.5545E-10	14879	DP1141_4	147.24	104.91			96777000	462	128	439	795;796	1135;1136	1135		2	9606
GFGFVTFDDHDPVDKIVLQK	Unmodified	2276.1477	0.14773345	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				2		20.896	20.896	2;3	2.1872E-11	16189	DP1141_4	158.52	117.64			137420000	463	128	440	797;798	1137;1138;1139	1137		3	9606
GFGFVTYATVEEVDAAMNAR	Oxidation (M)	2162.9943	0.99426928	88	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	0	4	0				1		22.296	22.296	2	0.0047666	18222	DP1141_4	88.092	62.147			21913000	464	88	441	799	1140	1140	84	1	9606
GFGFVTYATVEEVDAAMNARPHK	Oxidation (M)	2525.2009	0.20090801	88	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	4	0				1		20.397	20.397	4	3.2307E-30	15415	DP1141_4	153.36	139.5			229910000	465	88	442	800	1141;1142	1141	84	2	9606
GFGFVTYATVEEVDAAMNARPHK	Unmodified	2509.206	0.20599339	88	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	1	4	0				1		21.901	21.901	4	1.8042E-08	17534	DP1141_4	101.61	84.184			29220000	466	88	442	801	1143;1144;1145	1143		3	9606
GFSGGMKDMYDQVLK	2 Oxidation (M)	1706.7644	0.76439269	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	2	1	1	0	2					16.767	16.767	2;3	6.2093E-06	8769	DP1141_1	135.94	74.725			221060000	467	302;31	443	802;803	1146;1147;1148;1149	1146	25;26	4	9606
GFSLLATEDKEALKK	Unmodified	1648.9036	0.903587	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	3.33	1.25		1	1		1	17.518	17.518	3	9.1172E-09	9733	DP1141_3	131.79	109.3			1259300000	468	89	444	804;805;806	1150;1151;1152	1151		1	9606
GFSSGSAVVSGGSR	Unmodified	1253.6	0.60002819	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	3	2	1				1	15.619	15.619	2	6.846E-125	6848	DP1141_1	217.02	180.57		+	334960000	469	15	445	807;808	1153;1154;1155	1153		3	9606
GFSSGSAVVSGGSRR	Unmodified	1409.7011	0.70113922	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	1	1	0	1					14.748	14.748	3	0.015829	5359	DP1141_1	73.219	44.429		+	7181900	470	15	446	809	1156	1156		0	9606
GFVDDIIQPSSTR	Unmodified	1433.7151	0.71505795	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	1			1		1	19.805	19.805	2	4.5654E-05	14036	DP1141_5	172.88	126.42			45391000	471	73	447	810;811	1157;1158	1158		2	9606
GFVFITFKEEEPVKK	Unmodified	1796.9713	0.97127264	406	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	2	5	0					1	19.136	19.136	3	0.019272	12990	DP1141_5	65.895	49.722			37403000	472	406	448	812	1159	1159		0	9606
GGAAVDPDSGLEHSAHVLEK	Unmodified	1987.9599	0.95993268	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2.5	0.5		2	2			16.751	16.751	3;4	1.4461999999999999E-32	8875	DP1141_2	161.75	137.7			1534899999.9999998	473	89	449	813;814;815;816	1160;1161;1162;1163;1164;1165;1166	1162		6	9606
GGAYYPVTVK	Unmodified	1053.5495	0.54949617	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	1			1		1	16.919	16.919	2	0.0032478	8902	DP1141_3	121.09	98.021			719510000	474	436	450	817;818	1167;1168;1169	1167		3	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	Unmodified	2382.9446	0.94456998	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				15.388	15.388	2	1.2868E-204	6472	DP1141_1	294.98	222.8		+	105580000	475	65	451	819;820	1170;1171;1172	1170		3	9606
GGGGNFGPGPGSNFR	Unmodified	1376.6222	0.62216062	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.01	17.01	2	6.4991E-134	10156	DP1141_4	215.04	182.72			379220000	476	128	452	821	1173;1174;1175;1176	1175		4	9606
GGGHVAQIYAIR	Unmodified	1240.6677	0.66765425	230	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	16.387	16.387	3	0.014967	8430	DP1141_5	55.721	26.17			66223000	477	230	453	822	1177	1177		1	9606
GGKPEPPAMPQPVPTA	Oxidation (M)	1588.7919	0.79192806	132	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	1	1	0	1					15.836	15.836	2	0.02382	7173	DP1141_1	73.632	56.718			20861000	478	132	454	823	1178	1178	141	1	9606
GGNFGFGDSR	Unmodified	1012.4363	0.43625733	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.295	17.295	2	8.0318E-06	10584	DP1141_4	153.08	153.08			252040000	479	128	455	824	1179	1179		1	9606
GGSDDSSKDPIDVNYEK	Unmodified	1824.8014	0.80136636	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		2				16.215	16.215	2;3	1.5283E-26	8013	DP1141_2	158.65	158.65			407200000	480	89	456	825;826	1180;1181;1182	1181		3	9606
GGSGGGGSISGGGYGSGGGSGGR	Unmodified	1740.7412	0.74116614	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					14.412	14.412	2	4.0008999999999997E-172	4938	DP1141_1	216.01	163.29		+	23250000	481	15	457	827	1183;1184	1183		2	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	Unmodified	3222.2743	0.27429656	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				15.534	15.534	3	7.7059E-36	6805	DP1141_1	111.7	111.7		+	141500000	482	14	458	828;829	1185;1186;1187;1188	1185		4	9606
GGSWVVIDSSINPR	Unmodified	1485.7576	0.75759147	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			20.003	20.003	2	4.4968E-05	13933	DP1141_1	130.01	73.963			17580000	483	302	459	830;831;832	1189;1190;1191	1189		3	9606
GHALLILRPEELGFLR	Unmodified	1833.0625	0.062487683	450	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	3	0			1			21.175	21.175	3	0.019738	15402	DP1141_3	69.314	59.033			28207000	484	450	460	833	1192	1192		0	9606
GHAVGDIPGVR	Unmodified	1076.5727	0.57269123	232	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	15.553	15.553	2	0.0051684	7031	DP1141_5	111.17	78.752			39000000	485	232	461	834	1193	1193		1	9606
GHLENNPALEK	Unmodified	1220.6149	0.61494998	76	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		14.04	14.04	2	0.00080381	5359	DP1141_4	157.78	84.898			0	486	76	462	835	1194	1194		1	9606
GHQLLEEVTQGDMSAADTFLSDLPR	Oxidation (M)	2745.2916	0.29157351	363	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	2	0		1				22.594	22.594	3	2.7596E-15	17794	DP1141_2	131.43	101.51			34907000	487	363	463	836	1195;1196	1195	311	2	9606
GHYTEGAELVDSVLDVVR	Unmodified	1957.9745	0.97452012	81;258;312;308	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	4.2	0.748			1	2	2	22.339	22.339	2;3	0	18253	DP1141_4	452.13	375.8			199910000	488	81;258;312;308	464	837;838;839;840;841	1197;1198;1199;1200;1201;1202;1203;1204	1201		8	9606
GHYTEGAELVDSVLDVVRK	Unmodified	2086.0695	0.069483134	81;258;312;308	P07437;P68371;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	1	3	0			1			21.406	21.406	3	8.0464E-05	15900	DP1141_3	97.095	53.835			43398000	489	81;258;312;308	465	842	1205;1206	1205		2	9606
GIAYIEFK	Unmodified	939.50657	0.50656873	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				19.299	19.299	2	0.013411	12907	DP1141_2	124.59	75.834			226240000	490	123	466	843	1207	1207		0	9606
GILQELFLNK	Unmodified	1173.6758	0.67575932	396	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				23.136	23.136	2	0.0033104	18561	DP1141_2	128.61	74.64			43887000	491	396	467	844	1208	1208		1	9606
GIPAPEEERTR	Unmodified	1253.6364	0.6364137	59	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	1	4	0				1		14.321	14.321	3	0.01408	5840	DP1141_4	130.41	104.52			10685000	492	59	468	845	1209	1209		1	9606
GIPEFWLTVFK	Unmodified	1335.7227	0.72270951	214	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3	0			1			24.471	24.471	2	0.027318	20285	DP1141_3	93.178	63.511			0	493	214	469	846	1210	1210		1	9606
GIPHLVTHDAR	Unmodified	1214.652	0.65200419	127	P22090;P62701;Q8TD47	RPS4Y1;RPS4X;RPS4Y2	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	4	0				1		14.973	14.973	3	0.0039604	6844	DP1141_4	106.29	66.354			14182000	494	127	470	847	1211	1211		1	9606
GIPVVEHKVEK	Unmodified	1233.7081	0.70812208	100;277	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	1	1.33	0.471	2	1				14.18	14.18	2;3	0.00067846	4841	DP1141_2	123.11	97.048			50211000	495	100;277	471	848;849;850	1212;1213;1214;1215	1215		4	9606
GIRPAINVGLSVSR	Unmodified	1437.8416	0.84159587	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			17.957	17.957	3	0.023034	10469	DP1141_3	82.908	57.972			9233900	496	137	472	851	1216	1216		0	9606
GISVNAEQVR	Unmodified	1071.5673	0.5672715	428	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					15.922	15.922	2	0.011414	7255	DP1141_1	124.98	68.262			0	497	428	473	852	1217	1217		1	9606
GIYFADMVSK	Oxidation (M)	1145.5427	0.54269624	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2	0		1				18.198	18.198	2	0.025075	11147	DP1141_2	104.01	63.235			362880000	498	89	474	853	1218	1218	86	1	9606
GKGLGAQEQGATDHIK	Unmodified	1608.822	0.82198264	386	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	1	4	0				1		13.982	13.982	3	0.019728	5278	DP1141_4	70.167	18.703			15501000	499	386	475	854	1219	1219		0	9606
GKLEAIITPPPAK	Unmodified	1333.7969	0.79693709	50	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	1	4	0				1		17.095	17.095	3	0.00028392	10262	DP1141_4	113.52	68.909			274290000	500	50	476	855	1220	1220		1	9606
GKSETILSPPPEKR	Unmodified	1537.8464	0.84640648	459	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	2	4	0				1		14.453	14.453	3	0.028715	6041	DP1141_4	100.11	50.024			29901000	501	459	477	856	1221	1221		1	9606
GLAPDLPEDLYHLIK	Unmodified	1692.9087	0.90867238	234	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	22	22	3	0.0022838	17347	DP1141_5	115.37	89.83			27420000	502	234	478	857	1222	1222		1	9606
GLAPVQAYLHIPDIIK	Unmodified	1747.0032	0.0032414695	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.62	1.32	2	2	2	1	1	21.711	21.711	2;3	7.3114E-79	16334	DP1141_2	198.52	167.45			627770000	503	101	479	858;859;860;861;862;863;864;865	1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238	1230		16	9606
GLCAIAQAESLR	Unmodified	1287.6605	0.66051996	132	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	5	0					1	18.761	18.761	2	0.00099787	12359	DP1141_5	142.98	99.899			54325000	504	132	480	866	1239	1239		1	9606
GLCGAIHSSIAK	Unmodified	1212.6285	0.62849155	162	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		15.841	15.841	2	2.6884E-05	8186	DP1141_4	128.35	89.572			13914000	505	162	481	867	1240	1240		0	9606
GLGAQEQGATDHIK	Unmodified	1423.7056	0.7055559	386	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4	0				1		14.744	14.744	3	0.018557	6407	DP1141_4	99.844	46.831			171470000	506	386	482	868	1241	1241		0	9606
GLLEESSFATLFPK	Unmodified	1537.8028	0.80281033	310	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	3.5	0.5			1	1		22.869	22.869	2	7.6321E-08	18996	DP1141_4	144.55	107.96			12875000	507	310	483	869;870	1242;1243;1244	1243		3	9606
GLLKPGLNVVLEGPK	Unmodified	1532.929	0.92901389	407	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	1	4	0				1		19.396	19.396	3	0.00020155	14058	DP1141_4	113.53	100.76			32484000	508	407	484	871	1245;1246	1245		2	9606
GLPFGCSK	Unmodified	864.41637	0.41637351	149;148	P31943;P55795;P31942	HNRNPH1;HNRNPH2;HNRNPH3	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H3	no	no	0	0	0	4	0				1		17.006	17.006	2	0.0064663	10250	DP1141_4	115.46	81.966			38349000	509	149;148	485	872	1247	1247		1	9606
GLSEDTTEETLKESFDGSVR	Unmodified	2199.0179	0.017901073	123	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.5		1	1			19.404	19.404	3	8.8331E-107	12972	DP1141_2	247.5	218.62			154480000	510	123	486	873;874	1248;1249;1250	1248		3	9606
GLTPSQIGVILR	Unmodified	1252.7503	0.75032125	234	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	20.254	20.254	2	0.0059579	14618	DP1141_5	128.36	88.01			10924000	511	234	487	875	1251	1251		0	9606
GLVPEDDTKEK	Unmodified	1229.6139	0.61394692	331	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				14.62	14.62	3	0.032464	5472	DP1141_2	75.566	48.012			4665400	512	331	488	876	1252	1252		1	9606
GMTLVTPLQLLLFASK	Oxidation (M)	1746.9954	0.9953789	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	1.5	0.5	1	1				24.954	24.954	2	0.00015652	21118	DP1141_1	133.88	103.85			16541000	513	288	489	877;878	1253;1254;1255	1253	233	3	9606
GNSRPGTPSAEGGSTSSTLR	Unmodified	1917.914	0.91404512	159	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3.5	0.5			1	1		14.106	14.106	3	1.975E-32	4520	DP1141_3	190.1	172.64			36873000	514	159	490	879;880	1256;1257;1258;1259;1260	1257		5	9606
GNTAAYLLYAFTR	Unmodified	1459.746	0.74596415	209	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			22.983	22.983	2	0.00017239	18146	DP1141_3	132.17	99.756			0	515	209	491	881	1261	1261		1	9606
GNVGFVFTKEDLTEIRDMLLANK	Oxidation (M)	2625.3472	0.3472379	76	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	1	2	4	0				1		22.097	22.097	3	0.01652	17953	DP1141_4	63.936	42.563			8773200	516	76	492	882	1262	1262	55	1	9606
GPAPQDQAGPGGAPR	Unmodified	1374.664	0.66402543	63	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	1	0	1					14.038	14.038	2	0.0042938	4388	DP1141_1	118.4	84.443			1034700	517	63	493	883	1263	1263		1	9606
GPASVPSVGK	Unmodified	897.49198	0.4919813	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.838	14.838	2	2.3658E-24	5519	DP1141_3	176.44	133.53			271410000	518	307	494	884;885;886;887	1264;1265;1266;1267;1268	1267		4	9606
GPIAFWAR	Unmodified	916.49192	0.49192172	477	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	3	0			1			20.104	20.104	2	2.7576E-11	13869	DP1141_3	149.06	104.68			8806400	519	477	495	888	1269	1269		0	9606
GPLQSVQVFGR	Unmodified	1186.6459	0.64585618	230	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	19.304	19.304	2	1.2439E-111	13083	DP1141_5	219.7	190.55			72245000	520	230	496	889	1270;1271	1270		2	9606
GPMNQCLVATGTHEPK	Oxidation (M)	1754.808	0.80798883	279	Q03405	PLAUR	Urokinase plasminogen activator surface receptor	yes	yes	0	1	0	3	0			1			14.807	14.807	3	0.018434	5587	DP1141_3	61.265	28.531			9680800	521	279	497	890	1272	1272	231	1	9606
GPPDFSSDEEREPTPVLGSGAAAAGR	Unmodified	2569.2045	0.20447307	178	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	3	0			1			18.03	18.03	3	7.999E-19	10650	DP1141_3	119.02	104.47			14536000	522	178	498	891	1273;1274	1273		2	9606
GPSSVEDIKAK	Unmodified	1129.5979	0.59790293	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		13.838	13.838	2	0.010771	5040	DP1141_4	121.73	85.308			5814700	523	80	499	892	1275	1275		1	9606
GQVEYLLK	Unmodified	948.52803	0.52803245	181	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	5	0					1	17.898	17.898	2	0.035645	10847	DP1141_5	90.777	57.261			318410000	524	181	500	893	1276	1276		1	9606
GQVLPAHTLLNTVDVELIYEGVK	Unmodified	2507.3635	0.36353989	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.436	22.436	3	0.017913	17625	DP1141_1	46.92	35.56			5198900	525	302	501	894	1277	1277		1	9606
GRDDCGTFEDTGPLLQFDYK	Unmodified	2333.027	0.027025972	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.83	0.687		2	3	1		20.701	20.701	2;3	3.2329000000000002E-158	14988	DP1141_2	221.34	213.88			2243900000	526	316	502	895;896;897;898;899;900	1278;1279;1280;1281;1282;1283;1284;1285;1286	1281		9	9606
GRYEITAEDSQEK	Unmodified	1524.7056	0.70561548	431	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	1	4	0				1		14.902	14.902	3	0.036853	6685	DP1141_4	63.181	28.795			4262900	527	431	503	901	1287	1287		1	9606
GSLGGGFSSGGFSGGSFSR	Unmodified	1706.7649	0.76486169	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	0	1					19.436	19.436	2	0.0087527	12937	DP1141_1	79.346	55.07		+	400780000	528	12	504	902	1288	1288		1	9606
GSLGQGTAPVLPGK	Unmodified	1280.7089	0.70885036	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				16.923	16.923	2	2.6435E-23	9153	DP1141_2	163.84	112.31			89212000	529	307	505	903	1289;1290	1289		2	9606
GSLGSQGAKDEPEEELQK	Unmodified	1900.9014	0.90141475	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2	0		1				15.542	15.542	2	2.066E-05	6887	DP1141_2	124.16	82.132			0	530	307	506	904	1291	1291		1	9606
GSPTGGAQLLK	Unmodified	1027.5662	0.56620887	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0.816	1	1	1			15.957	15.957	2	0.001015	7341	DP1141_1	128.12	86.894			7106699999.999999	531	316	507	905;906;907	1292;1293;1294	1292		3	9606
GSPTGGAQLLKR	Unmodified	1183.6673	0.6673199	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.5	0.5			1	1		15.007	15.007	2	5.6257E-28	6908	DP1141_4	188.87	108.42			287160000	532	316	508	908;909	1295;1296	1296		1	9606
GSVLEPEGTVEIK	Unmodified	1356.7137	0.71366097	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	4	1			1		1	18.118	18.118	2	0.00069235	11203	DP1141_5	119.53	52.322			129330000	533	302	509	910;911	1297;1298	1298		2	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	Unmodified	3311.3008	0.30084566	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					15.836	15.836	3	6.3824E-147	7191	DP1141_1	186.76	144.26		+	88849000	534	65	510	912	1299	1299		1	9606
GSYSCEVTHEGSTVTK	Unmodified	1740.7625	0.76247843	17	CON__Q1RMN8			yes	yes	0	0	0	5	0					2	14.894	14.894	2;3	1.0101999999999999E-126	6001	DP1141_5	230.81	180.46		+	277460000	535	17	511	913;914	1300;1301;1302	1302		3	
GTAYTFFTPGNLK	Unmodified	1415.7085	0.70851601	383	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			20.391	20.391	2	0.00083803	14252	DP1141_3	139.43	107.22			0	536	383	512	915	1303	1303		1	9606
GTDTQTPAVLSPSK	Unmodified	1400.7147	0.7147236	183	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.179	16.179	2	9.3908E-06	7923	DP1141_2	120.86	83.791			0	537	183	513	916	1304	1304		1	9606
GTGIVSAPVPK	Unmodified	1024.5917	0.59169534	109	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.163	16.163	2	0.0010373	8814	DP1141_4	131.62	78.68			403270000	538	109	514	917	1305	1305		0	9606
GTHFVQLCCQR	Unmodified	1404.6391	0.63907301	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			16.061	16.061	2;3	0.0099178	7499	DP1141_3	83.397	52.846			101270000	539	436	515	918;919	1306;1307	1306		2	9606
GTPLDTEVPMER	Oxidation (M)	1359.634	0.63403044	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	1.12	1	1	1	1		16.899	16.899	2	2.8855E-12	8903	DP1141_3	157.75	135.9			559640000	540	101	516	920;921;922;923	1308;1309;1310;1311;1312;1313;1314	1313	119	7	9606
GVEEEEEDGEMRE	Oxidation (M)	1552.5835	0.58351101	236	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	1	5	0					1	14.694	14.694	2	1.9257E-23	5633	DP1141_5	163.84	158.11			19697000	541	236	517	924	1315;1316	1315	199	2	9606
GVEICIATPGR	Unmodified	1171.6019	0.60194245	116;383	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3	0			1			18.104	18.104	2	0.001375	10848	DP1141_3	128.86	70.424			35862000	542	116;383	518	925	1317	1317		1	9606
GVFEAIVDQSPFVPEETMEEQK	Oxidation (M)	2524.1679	0.16793613	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.43	1.18		2	2	1	2	22.48	22.48	2;3	4.6669E-84	17395	DP1141_3	187.08	168.44			1904399999.9999998	543	316	519	926;927;928;929;930;931;932	1318;1319;1320;1321;1322;1323;1324;1325;1326;1327;1328;1329	1324	281	12	9606
GVFEAIVDQSPFVPEETMEEQK	Unmodified	2508.173	0.17302151	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.33	1.25		2	2		2	22.965	22.965	2;3	0	18276	DP1141_2	219.61	202.81			586950000	544	316	519	933;934;935;936;937;938	1330;1331;1332;1333;1334;1335;1336;1337;1338;1339;1340;1341	1331		12	9606
GVFEAIVDQSPFVPEETMEEQKTK	Unmodified	2737.3157	0.315663	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				21.801	21.801	3	0.0098595	16670	DP1141_2	62.442	42.777			46244000	545	316	520	939	1342	1342		1	9606
GVISDILDWK	Unmodified	1144.6128	0.61282471	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	5	0					2	23.133	23.133	2	2.5658E-12	18890	DP1141_5	176.09	112.67			0	546	302	521	940;941	1343;1344	1343		2	9606
GVLKVFLENVIR	Unmodified	1385.8395	0.83947061	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	23.406	23.406	3	0.00061219	19391	DP1141_5	112.94	90.862			5409200	547	242	522	942	1345;1346	1345		2	9606
GVNLDPLGK	Unmodified	911.50763	0.50763136	183	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				18.198	18.198	2	0.024496	11300	DP1141_2	86.794	28.627			15529000	548	183	523	943	1347	1347		1	9606
GVPAGNSDTEGGQPGR	Unmodified	1497.6808	0.68079771	471	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	3	0			1			13.728	13.728	2	0.013655	3905	DP1141_3	111.52	81.751			0	549	471	524	944	1348	1348		1	9606
GVTFLFPIQAK	Unmodified	1219.6965	0.69649476	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				21.566	21.566	2	0.00019867	16220	DP1141_2	162.49	98.074			0	550	443	525	945	1349	1349		1	9606
GVTIASGGVLPNIHPELLAK	Unmodified	1985.131	0.13096118	50	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				2		20.198	20.198	2;3	8.6308E-09	15211	DP1141_4	111.34	78.336			744870000	551	50	526	946;947	1350;1351	1350		2	9606
GVTIASGGVLPR	Unmodified	1125.6506	0.6506072	459	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	0	4	0				1		18.001	18.001	2	0.016082	11687	DP1141_4	101.46	33.966			0	552	459	527	948	1352	1352		1	9606
GYLGPEQLPDCLK	Unmodified	1488.7283	0.72826518	174	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	3	0			1			19.662	19.662	2	9.7452E-06	13154	DP1141_3	123.11	80.774			0	553	174	528	949	1353	1353		1	9606
GYSFTTTAER	Unmodified	1131.5197	0.51965261	254	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	5	0					1	16.745	16.745	2	0.01194	8913	DP1141_5	109.48	88.531			77975000	554	254	529	950	1354	1354		1	9606
GYTIPLDKR	Unmodified	1061.5869	0.58694431	309	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	1	3	0			1			16.212	16.212	2	0.00040246	7718	DP1141_3	136.16	53.85			3489200	555	309	530	951	1355	1355		0	9606
HAASTVQILGAEK	Unmodified	1323.7147	0.71466402	484	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			15.812	15.812	3	0.01772	7091	DP1141_3	92.295	47.016			7660100	556	484	531	952	1356	1356		0	9606
HALIIYDDLSK	Unmodified	1286.6871	0.68705229	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.404	18.404	2	0.034163	11373	DP1141_3	83.647	55.905			69513000	557	137	532	953	1357	1357		1	9606
HAVSEGTKAVTKYTSAK	Unmodified	1776.937	0.9370124	47	P57053;O60814	H2BFS;HIST1H2BK	Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	2	5	0					1	14.241	14.241	4	0.01583	4938	DP1141_5	63.681	41.143			13223000	558	47	533	954	1358	1358		1	9606
HAVSEGTKAVTKYTSSK	Unmodified	1792.9319	0.93192702	216;133	Q16778;P33778;P23527;Q8N257;Q96A08;A0A2R8Y619;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	2	5	0					2	14.123	14.123	3;4	3.0708E-05	4773	DP1141_5	110.6	84.449			32113000	559	133;216	534	955;956	1359;1360	1360		2	9606
HDLDLICR	Unmodified	1040.5073	0.50731378	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.25	1.48	1		1	1	1	16.931	16.931	2	1.2316999999999998E-87	9205	DP1141_5	214.25	170.48			3302799999.9999995	560	164;225;226	535	957;958;959;960	1361;1362;1363;1364;1365;1366	1366		6	9606
HDTPDPSPLR	Unmodified	1133.5465	0.54653606	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3	0			1			14.607	14.607	2	2.9821E-51	5107	DP1141_3	180.45	145.15			19164000	561	412	536	961	1367	1367		0	9606
HEGVFICR	Unmodified	1016.4862	0.48618441	126	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		15.595	15.595	2	0.0062097	7855	DP1141_4	114.78	77.137			8373000	562	126	537	962	1368	1368		1	9606
HEMLPEFYK	Oxidation (M)	1208.5536	0.55359527	358	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	1	0	2	0		1				17.196	17.196	2	0.026059	9549	DP1141_2	84.743	56.047			14113000	563	358	538	963	1369	1369	310	1	9606
HFGLQILEHVVK	Unmodified	1418.8034	0.80341945	435	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	2	0		1				20.1	20.1	3	0.016221	14019	DP1141_2	69.815	47.74			5357200	564	435	539	964	1370	1370		0	9606
HFLVPASR	Unmodified	925.51339	0.51338544	0	P0DPI3;A0A0U1RRI6;A0A0U1RR11			yes	no	0	0	0	4	0				1		36.76	36.76	2	0.005983	35405	DP1141_4	114.19	0			1559700	565	0	540	965	1371	1371		1	9606
HGDVITIIDR	Unmodified	1137.6142	0.6142217	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	4	0				1		17.395	17.395	2	0.033526	10680	DP1141_4	93.598	52.874			50558000	566	182	541	966	1372	1372		1	9606
HGEEVTPEDVLSAAMYPDVFAHFK	Oxidation (M)	2704.2479	0.24791778	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.6	1.2	1	2		2		21.807	21.807	3;4	9.2728E-95	16589	DP1141_2	191.22	163.3			321010000	567	101	542	967;968;969;970;971	1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385	1379	120	13	9606
HGEEVTPEDVLSAAMYPDVFAHFK	Unmodified	2688.253	0.25300316	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				22.783	22.783	3	1.8770999999999998E-50	17929	DP1141_2	165.53	140.8			60205000	568	101	542	972;973	1386;1387;1388	1387		3	9606
HGFLEEFITPIVK	Unmodified	1528.829	0.8289655	277	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	2	0		2				22.091	22.091	2;3	3.2353999999999997E-23	17063	DP1141_2	167.09	77.202			16968000	569	277	543	974;975	1389;1390	1390		2	9606
HGGGGGGFGGGGFGSR	Unmodified	1319.5755	0.57554478	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					15.543	15.543	3	2.4848E-23	6572	DP1141_1	147.52	131.51		+	13401000	570	15	544	976	1391	1391		0	9606
HGSLGFLPR	Unmodified	982.53485	0.53484916	171	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	3	1.58	1	1		1	1	17.403	17.403	2	3.0639000000000002E-71	10008	DP1141_1	204.65	153.68			178820000	571	171	545	977;978;979;980	1392;1393;1394;1395;1396;1397;1398;1399	1395		7	9606
HGVDVEVQGPHEAR	Unmodified	1528.7383	0.73825301	437	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1	0	1					14.488	14.488	3	0.00038305	5021	DP1141_1	111.12	78.5			9497300	572	437	546	981	1400	1400		1	9606
HGVQELEIELQSQLSK	Unmodified	1836.9581	0.95814177	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.67	0.471	1	2				20.512	20.512	2;3	0	14677	DP1141_2	386.35	303.85		+	165160000	573	14	547	982;983;984	1401;1402;1403;1404;1405;1406;1407	1402		7	9606
HGYIGEFEIIDDHR	Unmodified	1699.7954	0.79543354	229	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	18.784	18.784	3	3.6754E-120	12335	DP1141_5	201.09	166.17			0	574	229	548	985	1408	1408		1	9606
HHIETGGGQLPAK	Unmodified	1343.6946	0.69459728	381	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					12.876	12.876	3	0.030484	2906	DP1141_1	59.155	19.277			857570	575	381	549	986	1409	1409		1	9606
HHLQPENPGPGGAAPSLEQNR	Unmodified	2205.0675	0.067526074	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.3	1.1		3	3	2	2	15.504	15.504	2;3;4	0	6888	DP1141_2	288.41	229.18			7143399999.999999	576	316	550	987;988;989;990;991;992;993;994;995;996	1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428	1418		18	9606
HIEIQVLGDK	Unmodified	1150.6346	0.63462279	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			17.432	17.432	2	8.4589E-24	9810	DP1141_1	172.27	113.21			192630000	577	72	551	997;998	1429;1430;1431;1432	1429		4	9606
HILLAVANDEELNQLLK	Unmodified	1932.068	0.068026571	50;459	Q9P0M6;O75367	H2AFY2;H2AFY	Core histone macro-H2A.2;Core histone macro-H2A.1	no	no	0	0	0	4	0				2		21.397	21.397	2;3	0.0094397	17005	DP1141_4	112.02	99.669			43724000	578	459;50	552	999;1000	1433;1434	1434		2	9606
HISVLVPCFLTFPK	Unmodified	1656.9062	0.90616996	487	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				22.001	22.001	3	0.022712	17035	DP1141_2	60.401	29.495			10021000	579	487	553	1001	1435	1435		1	9606
HKNMSVHLSPCFR	Oxidation (M)	1627.7711	0.77114982	235	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	1	5	0					1	14.894	14.894	4	0.030626	5965	DP1141_5	53.448	18.441			20887000	580	235	554	1002	1436	1436	198	0	9606
HLADHGQLSGIQR	Unmodified	1430.7379	0.73785908	46	O60783	MRPS14	28S ribosomal protein S14, mitochondrial	yes	yes	0	0	0	5	0					1	14.825	14.825	3	0.005834	5792	DP1141_5	94.402	46.431			14915000	581	46	555	1003	1437	1437		1	9606
HLDGEEDGSSDQSQASGTTGGR	Unmodified	2189.9057	0.90572486	477	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	3	0			1			13.56	13.56	3	9.1282E-236	3698	DP1141_3	241.13	223.22			5442100	582	477	556	1004	1438;1439	1439		2	9606
HLEINPDHPIVETLR	Unmodified	1781.9424	0.94243213	84	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				17.998	17.998	3	0.00094287	10882	DP1141_2	125.73	100.12			72175000	583	84	557	1005	1440	1440		1	9606
HLEPALAFQLELNR	Unmodified	1649.8889	0.88893999	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	3					25.939	25.939	2;3	1.0498E-07	14643	DP1141_1	169.58	134.89			68684000	584	302;31	558	1006;1007;1008	1441;1442;1443;1444;1445	1443		5	9606
HLLTLKDDAVK	Unmodified	1251.7187	0.71868677	442	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			16.012	16.012	3	0.015551	7363	DP1141_3	84.821	51.821			10601000	585	442	559	1009	1446	1446		1	9606
HLPSTEPDPHVVR	Unmodified	1482.7579	0.75792582	415	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	3	0.816		1	1	1		14.91	14.91	3	2.5101E-24	5978	DP1141_2	169.89	139.33			286770000	586	415	560	1010;1011;1012	1447;1448;1449;1450;1451	1448		4	9606
HLQLAIRNDEELNK	Unmodified	1691.8955	0.89548193	91;69;110	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;P16104;Q96QV6	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;H2AFX;HIST1H2AA	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2AX;Histone H2A type 1-A	no	no	0	0	1	5	0					2	16.387	16.387	2;3	4.1464E-169	8528	DP1141_5	229	172.99			989710000	587	69;91;110	561	1013;1014	1452;1453;1454	1453		3	9606
HLQLAIRNDEELNKLLGK	Unmodified	2103.18	0.18003664	91	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	yes	no	0	0	2	5	0					1	19.279	19.279	4	0.006104	13092	DP1141_5	84.046	55.411			75398000	588	91	562	1015	1455	1455		1	9606
HLTDAYFK	Unmodified	993.49198	0.4919813	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.463	16.463	2	0.0056892	9337	DP1141_4	113.41	55.244			188450000	589	276	563	1016	1456	1456		1	9606
HLVDEPQNLIK	Unmodified	1304.7089	0.70885036	9	CON__P02769			yes	yes	0	0	0	3.5	1.5		1			1	17.123	17.123	2	0.010736	9543	DP1141_2	102.06	70.64		+	74342000	590	9	564	1017;1018	1457;1458	1457		2	9606
HMFHVAWVDPEDPYK	Oxidation (M)	1885.8458	0.84575455	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.878	18.878	2	0.0017953	12353	DP1141_1	116.55	83.547			10942000	591	302	565	1019	1459	1459	247	1	9606
HMFHVAWVDPEDPYK	Unmodified	1869.8508	0.85083993	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.736	19.736	3	1.0547E-09	13507	DP1141_1	133.16	99.317			74662000	592	302	565	1020	1460;1461	1460		2	9606
HMFHVAWVDPEDPYKGYR	Oxidation (M)	2262.0317	0.03165784	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					18.759	18.759	3;4	5.264999999999999E-59	11984	DP1141_1	178.68	169.52			130710000	593	302	566	1021;1022	1462;1463	1462	247	2	9606
HMFHVAWVDPEDPYKGYR	Unmodified	2246.0367	0.036743217	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.436	19.436	4	0.020417	13199	DP1141_1	63.682	45.483			56012000	594	302	566	1023	1464;1465;1466	1465		3	9606
HMIMANPQMQQLMER	3 Oxidation (M)	1904.8365	0.83652855	445	Q9NRR5	UBQLN4	Ubiquilin-4	yes	yes	0	3	0	4	0				1		24.373	24.373	2	0.012017	21195	DP1141_4	54.539	9.3813			13100000	595	445	567	1024	1467	1467	364;365;366;367	1	9606
HNFCFMEMNTR	Unmodified	1485.5952	0.59515929	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			18.704	18.704	2;3	0.0014452	11648	DP1141_3	117.7	107.47			5072300	596	399	568	1025;1026	1468;1469	1468		2	9606
HNFCFMEMNTR	2 Oxidation (M)	1517.585	0.58498853	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	3	0			1			16.012	16.012	3	0.032505	7348	DP1141_3	60.641	43.525			33058000	597	399	568	1027	1470	1470	335;336	0	9606
HPAKPDPSGECNPDLR	Unmodified	1788.8213	0.82133071	333	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	4	0				1		13.848	13.848	3	0.0026245	5028	DP1141_4	80.632	52.083			4212600	598	333	569	1028	1471;1472	1471		2	9606
HPDVEVDGFSELR	Unmodified	1498.7052	0.70522155	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2.33	0.471		2	1			18.467	18.467	2;3	0.012896	11838	DP1141_2	58.32	11.728			206420000	599	89	570	1029;1030;1031	1473;1474;1475;1476	1475		4	9606
HPELNISEEGITK	Unmodified	1465.7413	0.7412727	115	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				17.007	17.007	2	0.0026632	9332	DP1141_2	125.23	93.192			57272000	600	115	571	1032	1477	1477		1	9606
HPFSFPLENQAR	Unmodified	1441.7102	0.71024735	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				18.614	18.614	3	0.033763	11842	DP1141_2	76.165	50.251			0	601	410	572	1033	1478	1478		1	9606
HPGSFDVVHVK	Unmodified	1220.6302	0.63020611	127	P22090;P62701	RPS4Y1;RPS4X	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform	yes	no	0	0	0	4	0				1		15.595	15.595	3	0.016966	7690	DP1141_4	91.469	55.151			15198000	602	127	573	1034	1479	1479		0	9606
HPQPGAVELAAK	Unmodified	1216.6564	0.65642086	140	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					14.825	14.825	2	0.021833	5637	DP1141_1	98.048	61.653			14673000	603	140	574	1035	1480	1480		1	9606
HPSKPDPSGECNPDLR	Unmodified	1804.8162	0.81624534	292	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	1	3.5	0.5			1	1		13.842	13.842	3	1.9257E-63	4218	DP1141_3	186.77	125.51			10541000	604	292	575	1036;1037	1481;1482;1483	1481		3	9606
HPSLPLLELQEIMTSVAGR	Oxidation (M)	2106.1143	0.11432484	31	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					22.035	22.035	3	1.0659E-05	16955	DP1141_1	118.48	77.878			13156000	605	31	576	1038	1484	1484	27	1	9606
HPVLCQSLLPILVQHITGPVRPR	Unmodified	2629.5003	0.50026534	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				21	21	4	0.0076089	15449	DP1141_2	69.024	60.069			16364000	606	410	577	1039	1485	1485		1	9606
HQEGEIFDTEKEK	Unmodified	1588.7369	0.73691561	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	2	1.41	2			1		14.819	14.819	2;3	6.9946E-08	6595	DP1141_4	135.91	92.409			35596000	607	276	578	1040;1041;1042	1486;1487;1488;1489	1489		4	9606
HQHMHDRDDLYAEQMER	2 Oxidation (M)	2241.928	0.9279974	490	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	2	1	1	0	1					14.012	14.012	4	0.00019528	4293	DP1141_1	95.067	79.093			12400000	608	490	579	1043	1490;1491	1490	389;390	2	9606
HQHMHDRDDLYAEQMER	Oxidation (M)	2225.9331	0.93308278	490	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	1	1	0	1					15.058	15.058	4	0.036994	5829	DP1141_1	51.727	38.431			4363100	609	490	579	1044	1492	1492	389;390	0	9606
HQVIQTVHPVEK	Unmodified	1413.7728	0.7728476	427	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	2	0		1				13.997	13.997	3	0.00023228	4678	DP1141_2	118.61	86.932			9192200	610	427	580	1045	1493	1493		1	9606
HRNEVTVELR	Unmodified	1251.6684	0.66838253	27	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	1	3	0			1			14.826	14.826	3	0.00083352	5355	DP1141_3	127.51	75.987			2970800	611	27	581	1046	1494	1494		1	9606
HRPSEADEEELAR	Unmodified	1537.7121	0.71209784	33	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	1	1	0	2					14.324	14.324	3	1.058E-119	4689	DP1141_1	231.69	190.21			0	612	33	582	1047;1048	1495;1496	1495		2	9606
HSGNITFDEIVNIAR	Unmodified	1684.8533	0.85328277	146	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	20.472	20.472	2	7.2309E-181	15115	DP1141_5	229.56	206.83			176100000	613	146	583	1049	1497;1498	1497		2	9606
HSGPNSADSANDGFVR	Unmodified	1629.7132	0.71316047	206	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0.816			1	1	1	14.768	14.768	3	2.2885E-79	6530	DP1141_4	161.94	145.37			130940000	614	206	584	1050;1051;1052	1499;1500;1501;1502;1503	1502		5	9606
HSQFLGYPITLYLEK	Unmodified	1807.9509	0.95087155	339	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	0	2	0		1				21.315	21.315	2	2.3499E-64	15775	DP1141_2	192.4	0			7946700	615	339	585	1053	1504	1504		1	9606
HTFSGVASVESSSGEAFHVGK	Unmodified	2118.997	0.99704647	11	CON__P12763			yes	yes	0	0	0	4	0				1		17.638	17.638	3	0.0072179	11104	DP1141_4	80.733	53.462		+	0	616	11	586	1054	1505	1505		1	
HTGPNSPDTANDGFVR	Unmodified	1683.7601	0.76011066	149	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	4.25	0.829			1	1	2	15.28	15.28	2;3	0	6295	DP1141_3	355.26	307.55			134380000	617	149	587	1055;1056;1057;1058	1506;1507;1508;1509;1510;1511;1512	1506		7	9606
HTPLVEFEEEESDKR	Unmodified	1843.8588	0.85882166	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	1.41	1	1	1	1	1	17.313	17.313	3	0	9531	DP1141_1	234.9	201.46			421230000	618	399	588	1059;1060;1061;1062;1063	1513;1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;1524	1515		12	9606
HTPLVEFEEEESDKRESE	Unmodified	2188.976	0.97603626	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	2.8	1.6	2		1	1	1	17.519	17.519	2;3	1.5821E-219	9535	DP1141_3	255.16	237.26			1295400000	619	399	589	1064;1065;1066;1067;1068	1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535	1530		11	9606
HVDYVADQIVTK	Unmodified	1386.7143	0.71432967	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1.5	0.5	1	1				16.658	16.658	2	1.3049E-186	8560	DP1141_1	253.71	225.01			142980000	620	100	590	1069;1070	1536;1537;1538	1536		3	9606
HVEVQVFGDHHGNAVYLFER	Unmodified	2352.14	0.13996274	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1.1	2	2		1		19.099	19.099	3;4	1.2533E-17	12606	DP1141_1	147.84	127.91			285060000	621	399	591	1071;1072;1073;1074;1075	1539;1540;1541;1542;1543;1544;1545;1546;1547	1541		9	9606
HVINFDLPSDIEEYVHR	Unmodified	2082.0171	0.017053633	30	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			21.118	21.118	3	0.03803	15458	DP1141_3	35.473	18.177			5671500	622	30	592	1076	1548	1548		1	9606
HVLHVQLNRPNK	Unmodified	1453.8266	0.82661451	301	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	1	4	0				1		14.453	14.453	3	0.00040173	6112	DP1141_4	137.95	101.63			37217000	623	301	593	1077	1549;1550	1550		2	9606
HVVFIAQR	Unmodified	968.55558	0.55558461	224	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	15.634	15.634	2	5.1688E-10	7167	DP1141_5	159.75	135.56			88321000	624	224	594	1078	1551	1551		1	9606
HWGGNVLGPK	Unmodified	1063.5563	0.55631289	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		16.363	16.363	2	2.1236999999999998E-19	9021	DP1141_4	157.33	115.04			101510000	625	239	595	1079	1552	1552		0	9606
HWPFMVVNDAGRPK	Oxidation (M)	1668.8195	0.81948022	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			17.904	17.904	3	0.017831	10442	DP1141_3	83.204	60.729			33881000	626	98	596	1080	1553	1553	108	1	9606
HWPFMVVNDAGRPK	Unmodified	1652.8246	0.8245656	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			18.704	18.704	3	0.0029052	11754	DP1141_3	104.17	75.878			30878000	627	98	596	1081	1554	1554		1	9606
HWPFQVINDGDKPK	Unmodified	1679.842	0.8419898	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	1	4	0.816			1	1	1	18.299	18.299	2;3	1.2337E-07	11219	DP1141_3	130.56	99.999			182090000	628	93	597	1082;1083;1084	1555;1556;1557;1558;1559	1555		5	9606
HYAHTDCPGHADYVK	Unmodified	1769.758	0.75800217	193	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	3	0			1			13.638	13.638	4	0.0071188	3782	DP1141_3	70.438	59.494			2256400	629	193	598	1085	1560;1561	1560		2	9606
HYFIEVNSR	Unmodified	1163.5724	0.57235688	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		16.897	16.897	2	1.4948E-09	9119	DP1141_2	157.33	88.414			911410000	630	101	599	1086;1087;1088	1562;1563;1564;1565;1566;1567	1564		6	9606
IAIYELLFK	Unmodified	1108.6532	0.65323296	188	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					1	23.284	23.284	2	0.0046549	19133	DP1141_5	134.81	113.28			74592000	631	188	600	1089	1568;1569	1568		2	9606
IALTDNALIAR	Unmodified	1169.6768	0.67682195	119	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		18.996	18.996	2	2.2436999999999998E-132	13323	DP1141_4	223.32	127.97			610750000	632	119	601	1090	1570	1570		1	9606
IALYGLGSIPDER	Unmodified	1402.7456	0.7456298	196	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	3	0			1			20.605	20.605	2	0.0037594	14750	DP1141_3	107.83	45.869			19072000	633	196	602	1091	1571	1571		1	9606
IANPVEGSTDR	Unmodified	1157.5677	0.56766543	326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		15.201	15.201	2	0.0080493	7128	DP1141_4	109.29	72.099			40486000	634	326	603	1092	1572;1573;1574	1572		3	9606
IAPPEAPVTGYMFGK	Oxidation (M)	1592.7909	0.79086543	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2.5	0.5		1	1			19.002	19.002	2	0.023544	12472	DP1141_2	67.879	54.788			394610000	635	89	604	1093;1094	1575;1576	1575	87	1	9606
IAPPEAPVTGYMFGK	Unmodified	1576.796	0.79595081	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	3	0			1			20.104	20.104	2	0.036715	13858	DP1141_3	88.338	48.465			20273000	636	89	604	1095	1577	1577		0	9606
IAPPETPDSK	Unmodified	1053.5342	0.53424004	458	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			14.851	14.851	2	0.034636	5537	DP1141_3	93.162	47.21			0	637	458	605	1096	1578	1578		1	9606
IAPYVAHNFSK	Unmodified	1245.6506	0.6506072	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				16.024	16.024	3	0.0066778	7599	DP1141_2	107.45	85.427			816820000	638	101	606	1097	1579	1579		0	9606
IAQPGDHVSVTGIFLPILR	Unmodified	2032.1469	0.14694559	155	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			22.169	22.169	3	1.5439E-06	16922	DP1141_3	128.38	101.23			5828300	639	155	607	1098	1580	1580		1	9606
IASSIVAQTAGIPTLPWSGSGLR	Unmodified	2281.243	0.24303082	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	0.943	2		1			22.25	22.25	2;3	2.7768999999999998E-39	17352	DP1141_1	211.75	192.47			80001000	640	302	608	1099;1100;1101	1581;1582;1583	1581		3	9606
IATLASGLEVGK	Unmodified	1157.6656	0.66558856	104	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	0	2	1	1		1			18.348	18.348	2	0.0038264	11445	DP1141_1	105.98	69.58			7631100	641	104	609	1102;1103	1584;1585	1584		2	9606
ICGDIHGQYTDLLR	Unmodified	1659.8039	0.80388973	226	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	4	0				1		18.595	18.595	3	0.00022204	12580	DP1141_4	122.46	98.628			90904000	642	226	610	1104	1586	1586		0	9606
ICGDIHGQYYDLLR	Unmodified	1721.8195	0.8195398	164;225	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	4	0.816			1	1	1	25.058	25.058	3	0.00088781	13057	DP1141_5	146.79	126.95			1023199999.9999999	643	164;225	611	1105;1106;1107	1587;1588;1589;1590	1590		4	9606
IDEPLEGSEDR	Unmodified	1258.5677	0.56772501	223	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			16.212	16.212	2	1.0959000000000001E-24	7573	DP1141_3	174.86	91.659			33023000	644	223	612	1108	1591;1592	1591		2	9606
IDIIPNPQER	Unmodified	1193.6404	0.64043645	84	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	3	1		1		1		18.346	18.346	2	0.017511	11542	DP1141_2	106.68	58.977			55105000	645	84	613	1109;1110	1593;1594;1595	1594		3	9606
IDTGWLDR	Unmodified	974.48214	0.48214489	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.137	19.137	2	0.00025411	12673	DP1141_2	145.34	73.203			320830000	646	302	614	1111;1112	1596;1597	1597		2	9606
IDTIEIITDR	Unmodified	1187.6398	0.63976774	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4.5	0.5				1	1	19.7	19.7	2	8.8787E-24	13817	DP1141_5	171.99	115.18			148370000	647	128	615	1113;1114	1598;1599	1599		2	9606
IEDVTPIPSDSTR	Unmodified	1428.7096	0.70963822	231	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	17.212	17.212	2	0.013286	9935	DP1141_5	97.452	61.118			133270000	648	231	616	1115	1600	1600		1	9606
IEDVTPIPSDSTRR	Unmodified	1584.8107	0.81074925	231	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					2	16.263	16.263	2;3	1.317E-23	8192	DP1141_5	169.58	119.22			142790000	649	231	617	1116;1117	1601;1602;1603;1604	1603		4	9606
IEEVPELPLVVEDKVEGYK	Unmodified	2184.1566	0.15656681	163	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			21.005	21.005	3	2.9007E-13	15206	DP1141_3	145.43	94.551			31520000	650	163	618	1118	1605;1606	1606		2	9606
IEISELNR	Unmodified	972.52401	0.52400971	65;15	CON__P35908v2;CON__P35908;P35908;P04264;CON__P04264	KRT2;KRT1	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1	no	no	0	0	0	2.67	1.7	1	1			1	17.356	17.356	2	8.5018E-43	9924	DP1141_2	189.62	55.561		+	1997299999.9999998	651	15;65	619	1119;1120;1121	1607;1608;1609	1608		2	9606
IENLSNLHQLQMLELGSNR	Oxidation (M)	2224.127	0.12701479	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		19.677	19.677	3	0.025504	14282	DP1141_4	69.024	27.676			0	652	330	620	1122	1610	1610	292	1	9606
IENVPTGPNNKPK	Unmodified	1406.7518	0.75177781	42	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	1	5	0					1	13.87	13.87	3	0.0085143	4254	DP1141_5	86.288	42.683			4513400	653	42	621	1123	1611;1612	1612		2	9606
IETIEVMEDR	Oxidation (M)	1249.586	0.58601761	203	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	4	0				1		16.601	16.601	2	0.0018992	9474	DP1141_4	126.07	70.537			159750000	654	203	622	1124	1613;1614	1614	179	2	9606
IETKPCGEELK	Unmodified	1302.649	0.64895222	480	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	1	4	0				1		14.19	14.19	3	0.0083343	5610	DP1141_4	104.07	40.206			21592000	655	480	623	1125	1615	1615		1	9606
IETLDPALIRPGR	Unmodified	1449.8304	0.83036248	227	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	1	3	0			1			18.442	18.442	3	0.0081863	11273	DP1141_3	92.247	67.733			4205500	656	227	624	1126	1616	1616		1	9606
IEVIEIMTDR	Oxidation (M)	1233.6275	0.6274885	88	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		18.495	18.495	2	0.03431	12476	DP1141_4	89.047	49.003			64276000	657	88	625	1127	1617	1617	85	1	9606
IEWLESHQDADIEDFKAK	Unmodified	2173.0328	0.032763276	97	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			18.979	18.979	3	2.2856E-07	12108	DP1141_3	145.79	104.47			0	658	97	626	1128	1618	1618		1	9606
IFAPNHVVAK	Unmodified	1094.6237	0.62366417	275	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	15.233	15.233	2	0.018029	6525	DP1141_5	89.142	29.937			39554000	659	275	627	1129	1619	1619		1	9606
IFCCHGGLSPDLQSMEQIR	Oxidation (M)	2263.0184	0.018392316	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	0	3.5	0.5			1	1		18.099	18.099	3	4.7027E-06	10893	DP1141_3	126.42	105.86			678430000	660	164;225;226	628	1130;1131	1620;1621	1620	153	2	9606
IFCCHGGLSPDLQSMEQIR	Unmodified	2247.0235	0.023477694	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		19.65	19.65	3	3.6137E-09	13239	DP1141_3	139.08	123.99			128000000	661	164;225;226	628	1132;1133	1622;1623;1624	1622		3	9606
IFGYPVGIVGNNGVLFSESAK	Unmodified	2167.1314	0.13135511	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		22.674	22.674	2	0	17722	DP1141_3	262.37	225.7			112830000	662	436	629	1134;1135;1136	1625;1626;1627;1628	1626		4	9606
IFGYPVGIVGNNGVLFSESAKK	Unmodified	2295.2263	0.22631813	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			21.306	21.306	3	8.9903E-10	15707	DP1141_3	106.75	80.924			29184000	663	436	630	1137	1629	1629		1	9606
IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK	Oxidation (M)	3782.8673	0.86728444	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2	0		1				18.199	18.199	3	2.0636E-05	11037	DP1141_2	50.942	38.784			144530000	664	89	631	1138	1630	1630	88	1	9606
IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK	Unmodified	3766.8724	0.87236982	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				18.798	18.798	3	1.1485E-15	11872	DP1141_2	73.817	58.674			40464000	665	89	631	1139	1631	1631		1	9606
IFVGGLSPDTPEEK	Unmodified	1487.7508	0.75077476	313	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		18.595	18.595	2	1.4973999999999998E-23	12714	DP1141_4	166.86	106.93			54748000	666	313	632	1140	1632	1632		1	9606
IGEEEIQKPEEK	Unmodified	1427.7144	0.71438925	331	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				14.719	14.719	3	0.00021421	5580	DP1141_2	139.32	97.24			48553000	667	331	633	1141	1633	1633		1	9606
IGGIGTVPVGR	Unmodified	1024.6029	0.60292873	256	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3	1.41	1	1	1	1	1	17.313	17.313	2	0.0008447	9616	DP1141_3	120.87	52.486			584800000	668	256	634	1142;1143;1144;1145;1146	1634;1635;1636;1637;1638	1636		4	9606
IGLAEEIR	Unmodified	899.50763	0.50763136	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.759	17.759	2	0.00066869	10343	DP1141_1	138.24	18.685			323830000	669	302	635	1147	1639	1639		1	9606
IGPLGLSPK	Unmodified	880.5382	0.53820321	146	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.798	17.798	2	0.024975	10890	DP1141_5	93.429	43.839			284180000	670	146	636	1148	1640	1640		1	9606
IGPYQPNVPVGIDYVIPK	Unmodified	1968.072	0.072049316	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				21.501	21.501	2	4.0157E-27	16059	DP1141_2	162.48	122			16656000	671	180	637	1149	1641	1641		1	9606
IGQGYLIK	Unmodified	890.52255	0.52255314	171	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2	0		1				17.196	17.196	2	0.026309	9799	DP1141_2	94.006	36.195			8992500	672	171	638	1150	1642	1642		0	9606
IGSFGPGEDLLYLR	Unmodified	1535.7984	0.79839365	31	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.035	22.035	2	0.025036	16979	DP1141_1	74.962	46.004			31180000	673	31	639	1151	1643	1643		1	9606
IGSFGPQEDLLFLR	Unmodified	1590.8406	0.84059282	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				22.63	22.63	2	1.0086E-06	17867	DP1141_2	157.97	127.24			1585599999.9999998	674	302	640	1152;1153;1154	1644;1645;1646;1647;1648	1648		5	9606
IGVLDEGK	Unmodified	829.45453	0.45453316	186	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	16.268	16.268	2	3.3058E-06	8166	DP1141_5	152.63	33.077			157530000	675	186	641	1155	1649;1650	1649		2	9606
IHEGCEEPATHNALAK	Unmodified	1775.8261	0.82608174	271	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2.67	1.7	1	1			1	13.831	13.831	3;4	0.00056328	4312	DP1141_2	111.07	55.412			26166000	676	271	642	1156;1157;1158	1651;1652;1653;1654	1652		2	9606
IHFPLATYAPVISAEK	Unmodified	1755.956	0.95595693	257;409	P68363;P68366;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3	1.1	1		2	2		20.465	20.465	2;3	2.6897E-10	15399	DP1141_4	125.36	82.398			797740000	677	257;409	643	1159;1160;1161;1162;1163	1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668	1666		14	9606
IHNANPELTDGQIQAMLR	Oxidation (M)	2036.0109	0.010922397	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.659	17.659	3	3.9139E-06	10117	DP1141_1	132.25	119.88			222430000	678	302	644	1164	1669	1669	248	1	9606
IHPTSVISGYR	Unmodified	1228.6564	0.65642086	118	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			16.384	16.384	3	0.0079881	7944	DP1141_3	73.841	53.711			0	679	118	645	1165	1670	1670		1	9606
IIDEVVNK	Unmodified	928.52295	0.52294707	62	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	15.553	15.553	2	1.4256E-10	6985	DP1141_5	162.51	59.228			91480000	680	62	646	1166	1671	1671		1	9606
IIDPLPPIDHSEIDYPPFEK	Unmodified	2334.1784	0.17836488	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				21.219	21.219	3	0.0023284	15552	DP1141_2	85.937	51.735			10169000	681	359	647	1167	1672;1673	1672		2	9606
IIEEAPAPGIK	Unmodified	1136.6441	0.64412484	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		16.522	16.522	2	5.546700000000001E-25	8409	DP1141_1	176.44	139.29			796380000	682	399	648	1168;1169;1170	1674;1675;1676;1677	1674		3	9606
IIEEAPATIATPAVFEHMEQCAVK	Oxidation (M)	2670.3033	0.30332417	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.436	19.436	3	0.00089204	12970	DP1141_1	87.729	72.666			142610000	683	302	649	1171	1678;1679	1678	249	2	9606
IIEEAPATIATPAVFEHMEQCAVK	Unmodified	2654.3084	0.30840955	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.836	20.836	3	5.0854E-18	15220	DP1141_1	152.09	132.78			105690000	684	302	649	1172	1680;1681	1680		2	9606
IIEFVPTK	Unmodified	945.55352	0.55351892	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.458	18.458	2	0.00031332	11491	DP1141_1	143.85	50.26			419200000	685	302	650	1173	1682;1683	1682		2	9606
IIGATDSCGDLMFLMK	Unmodified	1770.8354	0.83544914	181	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	5	0					1	22.265	22.265	2	1.5947E-06	17618	DP1141_5	121.02	79.738			5630100	686	181	651	1174	1684	1684		0	9606
IIGATDSSGELMFLMK	2 Oxidation (M)	1743.8423	0.84230866	305;267	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	no	no	0	2	0	5	0					1	20.085	20.085	2	0.0093467	14509	DP1141_5	73.887	34.621			177780000	687	305;267	652	1175	1685	1685	224;225	1	9606
IIGATDSSGELMFLMK	Unmodified	1711.8525	0.85247941	305;267	Q13185;P83916	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	no	no	0	0	0	5	0					1	22.193	22.193	2	1.3209E-63	17587	DP1141_5	190.66	146.02			18545000	688	305;267	652	1176	1686;1687	1686		2	9606
IIGHFYASQMAQR	Unmodified	1520.7558	0.75581733	458	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			17.337	17.337	3	0.021452	9496	DP1141_3	63.473	23.893			0	689	458	653	1177	1688	1688		1	9606
IIIEDLLEATR	Unmodified	1284.7289	0.7289171	381	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					22.41	22.41	2	0.032619	17606	DP1141_1	93.178	40.923			8858200	690	381	654	1178	1689	1689		1	9606
IILDLISESPIK	Unmodified	1339.7963	0.79626839	223	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.5	0.5			1	1		21.902	21.902	2	0.00062836	16613	DP1141_3	137.98	85.26			110310000	691	223	655	1179;1180	1690;1691;1692;1693;1694	1690		5	9606
IINEPTAAAIAYGLDKK	Unmodified	1786.9829	0.98289996	98	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			1			19.24	19.24	3	0.028583	12509	DP1141_3	88.19	54.873			0	692	98	656	1181	1695	1695		1	9606
IINEPTAAAIAYGLDR	Unmodified	1686.8941	0.89408495	93;114	P0DMV8;P0DMV9;P17066	HSPA1A;HSPA1B;HSPA6	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6	no	no	0	0	0	4	0.707			1	2	1	20.544	20.544	2;3	2.1988E-135	14521	DP1141_3	221.09	179.39			557560000	693	93;114	657	1182;1183;1184;1185	1696;1697;1698;1699;1700;1701	1696		6	9606
IIPPQPMEGLGFLDALNSAPVPGIK	Oxidation (M)	2589.3876	0.38764615	396	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2	0		2				23.236	23.236	2;3	0.0084713	18806	DP1141_2	47.38	34.059			21107000	694	396	658	1186;1187	1702;1703	1702	329	2	9606
IIQLLDDYPK	Unmodified	1216.6703	0.67033959	76	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		20.098	20.098	2	0.03648	14996	DP1141_4	99.653	47.658			513960000	695	76	659	1188	1704;1705	1705		2	9606
IIQQAGQVWFPDSAFK	Unmodified	1833.9414	0.94136949	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1	1		1			21.421	21.421	2	1.1641000000000001E-29	15830	DP1141_1	208.27	173.76			1091000000	696	302	660	1189;1190	1706;1707	1706		2	9606
IITHPNFNGNTLDNDIMLIK	Unmodified	2282.1729	0.17290235	4	CON__P00761			yes	yes	0	0	0	2	0		1				20.657	20.657	3	2.365E-25	14897	DP1141_2	120.4	101.48		+	45014000	697	4	661	1191	1708;1709	1708		2	
IITHPNFNGNTLDNDIMLIK	Oxidation (M)	2298.1678	0.16781697	4	CON__P00761			yes	yes	0	1	0	3	1		1		1		20.125	20.125	3	2.1025E-07	14152	DP1141_2	103.73	73.191		+	232950000	698	4	661	1192;1193	1710;1711	1710	4	1	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Oxidation (M)	3324.7136	0.71362475	4	CON__P00761			yes	yes	0	1	1	4	0				1		21.097	21.097	4	0.0022108	16309	DP1141_4	47.286	32.203		+	8629200	699	4	662	1194	1712	1712	4	1	
IKADPDGPEAQAEACSGER	Unmodified	1999.8905	0.89053249	452	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	1	5	0					1	15.254	15.254	3	4.6481E-13	6562	DP1141_5	143.23	120.43			20716000	700	452	663	1195	1713	1713		1	9606
IKFEMEQNLR	Unmodified	1306.6704	0.67035637	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1					17.659	17.659	3	0.0004388	10289	DP1141_1	137.46	67.061		+	70144000	701	14	664	1196	1714	1714		0	9606
IKFEMEQNLR	Oxidation (M)	1322.6653	0.66527099	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2	0		2				16.024	16.024	2;3	0.0069945	7594	DP1141_2	117.01	72.15		+	615410000	702	14	664	1197;1198	1715;1716	1716	9	2	9606
IKYPENFFLLR	Unmodified	1438.7973	0.79727144	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.43	1.18	1		2	3	1	23.427	23.427	2;3	4.5235E-60	14874	DP1141_3	172.61	157.18			1356900000	703	164;225;226	665	1199;1200;1201;1202;1203;1204;1205	1717;1718;1719;1720;1721;1722;1723;1724	1718		8	9606
ILDNLMEMK	2 Oxidation (M)	1137.541	0.54098168	375	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	2	0	3	0			1			15.712	15.712	2	0.0054977	7023	DP1141_3	111.82	71.038			11287000	704	375	666	1206	1725	1725	318;319	1	9606
ILDPEGLALGAVIASSK	Unmodified	1652.9349	0.93488713	363	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	3	1		1		1		22.593	22.593	2	1.6561E-48	17656	DP1141_2	190.37	165.51			80776000	705	363	667	1207;1208	1726;1727;1728	1726		3	9606
ILDSVGIEADDDRLNK	Unmodified	1771.8952	0.89520716	75	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	1	5	0					1	17.798	17.798	3	0.0026245	10902	DP1141_5	98.943	70.646			71753000	706	75	668	1209	1729	1729		1	9606
ILEPGLNILIPVLDR	Unmodified	1674.008	0.0079924964	469	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				1		23.993	23.993	2	0.0094928	20777	DP1141_4	99.5	68.703			4831900	707	469	669	1210	1730;1731	1731		2	9606
ILGEWWYALGPKEKQK	Unmodified	1945.0462	0.046168917	397	Q96RK0	CIC	Protein capicua homolog	yes	yes	0	0	2	3	0			1			14.807	14.807	4	0.011865	5623	DP1141_3	69.92	23.601			280900000	708	397	670	1211	1732	1732		1	9606
ILGPGLNK	Unmodified	810.49634	0.49633839	248	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	3	2	1				1	16	16	2	0.0055645	7846	DP1141_5	119.22	39.282			318610000	709	248	671	1212;1213	1733;1734;1735	1735		3	9606
ILITTVPPNLR	Unmodified	1235.7602	0.76015765	298	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		20.157	20.157	2	0.0021214	15032	DP1141_4	114.89	48.273			9852500	710	298	672	1214	1736;1737	1737		2	9606
ILLTQENPFFR	Unmodified	1376.7452	0.74523587	291	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				21.501	21.501	2	0.001015	16219	DP1141_2	128.12	81.731			7012200	711	291	673	1215	1738;1739	1739		2	9606
ILNVPQELYEK	Unmodified	1344.7289	0.7289171	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1		1		1		19.298	19.298	2	1.2757999999999999E-51	12962	DP1141_2	178.84	132.38			220230000	712	302	674	1216;1217	1740;1741	1740		1	9606
ILPDDPDKKPQAK	Unmodified	1463.7984	0.79839365	34	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	2	2	0		1				13.39	13.39	3	0.0066403	3639	DP1141_2	126.12	92.891			867740	713	34	675	1218	1742;1743	1742		2	9606
ILPTLEAVAALGNK	Unmodified	1408.829	0.8289655	298	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4.5	0.5				1	1	21.367	21.367	2	7.043700000000001E-33	16865	DP1141_4	176.6	118.35			173140000	714	298	676	1219;1220	1744;1745	1744		2	9606
ILSGVVTK	Unmodified	815.51165	0.5116541	235	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	15.717	15.717	2	0.00048801	7252	DP1141_5	140.98	46.322			218870000	715	235	677	1221	1746	1746		1	9606
ILTFDQLALDSPK	Unmodified	1459.7922	0.79224564	284	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	21.237	21.237	2	2.1367E-11	16284	DP1141_5	155	104.81			162300000	716	284	678	1222	1747	1747		1	9606
IMIMTDQDQDGSHIK	2 Oxidation (M)	1762.7866	0.78658469	100;277	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	2	0	1.5	0.5	1	1				15.338	15.338	3	0.00097202	6694	DP1141_1	80.371	47.668			171190000	717	100;277	679	1223;1224	1748;1749;1750	1749	113;114	2	9606
IMIMTDQDQDGSHIK	Unmodified	1730.7968	0.79675545	100;277	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	1	0	1					16.984	16.984	3	7.9849E-06	8959	DP1141_1	135.81	104.77			28471000	718	100;277	679	1225	1751	1751		1	9606
IMKNEIQDLQTK	Oxidation (M)	1475.7654	0.76537896	153	P32455	GBP1	Interferon-induced guanylate-binding protein 1	yes	yes	0	1	1	3	0			1			17.549	17.549	2	0.016522	10047	DP1141_3	106.2	23.938			4177500	719	153	680	1226	1752	1752	149	1	9606
IMLPWDPTGK	Oxidation (M)	1172.59	0.58998078	132	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		20.796	20.796	2	0.0042354	15993	DP1141_4	117.81	71.839			38522000	720	132	681	1227	1753	1753	142	1	9606
IMNTFSVMPSPK	Oxidation (M)	1366.6625	0.6624938	312	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3	0			1			18.417	18.417	2	0.038116	11215	DP1141_3	95.573	49.167			0	721	312	682	1228	1754	1754	277	1	9606
IMNTFSVVPSPK	Oxidation (M)	1334.6904	0.69042311	81;258;308	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3	1.63	1		1		1	18.205	18.205	2	0.00030314	10659	DP1141_3	140.49	88.318			402360000	722	81;258;308	683	1229;1230;1231	1755;1756;1757;1758;1759	1756	68	4	9606
IMNTFSVVPSPK	Unmodified	1318.6955	0.69550848	81;258;308	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		19.1	19.1	2	1.295E-07	13423	DP1141_4	151.15	77.648			297680000	723	81;258;308	683	1232;1233	1760;1761;1762;1763	1763		4	9606
INEEISVK	Unmodified	930.50221	0.50221163	415	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				15.624	15.624	2	0.00035211	7037	DP1141_2	134.48	49.563			68986000	724	415	684	1234	1764	1764		0	9606
INISEGNCPER	Unmodified	1287.5877	0.58774895	326	Q15366;Q15365;P57721	PCBP2;PCBP1;PCBP3	Poly(rC)-binding protein 2;Poly(rC)-binding protein 1;Poly(rC)-binding protein 3	yes	no	0	0	0	4	0				1		15.491	15.491	2	1.5501E-10	7591	DP1141_4	183.67	127.24			69449000	725	326	685	1235	1765	1765		1	9606
INTQWLLTSGTTEANAWK	Unmodified	2033.0218	0.02180466	23	CON__Streptavidin			yes	yes	0	0	0	4.2	1.6	1				4	27.61	27.61	2;3	0	16638	DP1141_5	285.94	219.55		+	2981199999.9999995	726	23	686	1236;1237;1238;1239;1240	1766;1767;1768;1769;1770;1771;1772;1773;1774;1775;1776	1770		11	
IPCDSPQSDPVDTPTSTK	Unmodified	1943.8782	0.87823647	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			16.018	16.018	2	7.9862E-47	7851	DP1141_2	172.43	138.84			54622000	727	182	687	1241;1242	1777;1778	1777		2	9606
IPCESPPLEVVDTTASTK	Unmodified	1942.9558	0.95575851	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.899	18.899	2	0.0038777	12464	DP1141_2	88.101	62.759			50377000	728	182	688	1243	1779	1779		1	9606
IPDWFLNR	Unmodified	1059.5502	0.55016488	233	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	21.136	21.136	2	9.4245E-32	15914	DP1141_5	181.2	125.76			160410000	729	233	689	1244	1780	1780		1	9606
IPGLLSPHPLLQLSYTATDR	Unmodified	2191.2001	0.20010338	191	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					21.537	21.537	3	0.012851	16212	DP1141_1	62.556	39.227			7048500	730	191	690	1245	1781	1781		0	9606
IPIHNEDITYDELVLMMQR	2 Oxidation (M)	2361.1345	0.13446793	382	Q92734	TFG	Protein TFG	yes	yes	0	2	0	3	0			1			19.704	19.704	3	0.0011894	13367	DP1141_3	77.027	53.55			71879000	731	382	691	1246	1782	1782	321;322	1	9606
IPIHNEDITYDELVLMMQR	Oxidation (M)	2345.1396	0.13955331	382	Q92734	TFG	Protein TFG	yes	yes	0	1	0	3	0			1			20.715	20.715	3	1.315E-06	14921	DP1141_3	113.14	68.563			15112000	732	382	691	1247	1783	1783	321;322	1	9606
IPLSQEEITLQGHAFEAR	Unmodified	2038.0484	0.048353761	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.6	1.02	1	1	2	1		19.208	19.208	2;3	2.9506E-279	12800	DP1141_2	252.25	202.09			2638100000	733	399	692	1248;1249;1250;1251;1252	1784;1785;1786;1787;1788;1789;1790	1786		7	9606
IPVQAVWAGWGHASENPK	Unmodified	1945.9799	0.97988027	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.67	1.25	1		1	1		19.712	19.712	3	9.3068E-07	14410	DP1141_4	110.57	88.759			596250000	734	302;31	693	1253;1254;1255	1791;1792;1793;1794;1795	1795		4	9606
IPWFQYPIIYDIR	Unmodified	1722.9134	0.91336383	404	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		24.229	24.229	2	0.0020711	21019	DP1141_4	141.71	111.71			11579000	735	404	694	1256	1796	1796		1	9606
IQASTMAFK	Oxidation (M)	1011.5059	0.5059168	165	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	15.254	15.254	2	0.026132	6527	DP1141_5	84.498	32.095			30772000	736	165	695	1257	1797	1797	154	1	9606
IQDKEGIPPDQQR	Unmodified	1522.774	0.77396981	92	P62987;P62979;P0CG47;P0CG48;A0A2R8Y422	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	2.89	1.45	2	2	2	1	2	14.091	14.091	2;3	3.4889E-69	4175	DP1141_5	190.36	128.76			214100000	737	92	696	1258;1259;1260;1261;1262;1263;1264;1265;1266	1798;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811	1810		13	9606
IQDWYDKK	Unmodified	1094.5397	0.53965977	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1.5	0.5	1	1				15.853	15.853	2	0.008798	7472	DP1141_2	121.62	56.842		+	178210000	738	14	697	1267;1268	1812;1813	1813		1	9606
IQEAGTEVVK	Unmodified	1072.5764	0.57643921	174	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	3.5	1.5		1			1	14.727	14.727	2	0.011164	5580	DP1141_5	101.72	12.426			20858000	739	174	698	1269;1270	1814;1815	1815		2	9606
IQEQESSGEEDSDLSPEEREK	Unmodified	2420.0463	0.046300668	176	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	5	0					1	15.23	15.23	3	6.0800000000000004E-24	6496	DP1141_5	196.3	169.46			4248500	740	176	699	1271	1816	1816		1	9606
IQTQPGYANTLR	Unmodified	1360.7099	0.709913	270	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	1	0	1					16.507	16.507	2	0.0010855	8310	DP1141_1	152.04	73.525			72269000	741	270	700	1272	1817	1817		1	9606
IRDEMVATEQER	Oxidation (M)	1491.6988	0.69875596	112	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	1	1	1	0	1					13.8	13.8	3	0.037058	3995	DP1141_1	60.345	30.795			0	742	112	701	1273	1818	1818	129	1	9606
IRLENEIQTYR	Unmodified	1433.7627	0.76267685	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.33	1.25	1	1		1		17.45	17.45	2;3	4.6556999999999997E-66	9970	DP1141_2	163.46	88.502		+	381510000	743	12	702	1274;1275;1276	1819;1820;1821	1820		0	9606
ISAMKEEKEQLSAER	Oxidation (M)	1763.8724	0.87236323	478	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	1	2	2	0		1				14.073	14.073	4	0.031993	4644	DP1141_2	48.899	21.871			5726000	744	478	703	1277	1822	1822	383	0	9606
ISDIQSQLEK	Unmodified	1159.6085	0.60846762	450	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	4	0				1		16.86	16.86	2	0.0008204	9860	DP1141_4	128.86	22.174			0	745	450	704	1278	1823	1823		1	9606
ISEQFTAMFR	Oxidation (M)	1244.586	0.58595803	81;258;312;308	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	1	0	4.5	0.5				1	1	18.589	18.589	2	5.6997E-34	12070	DP1141_5	181.55	124.74			612980000	746	81;258;312;308	705	1279;1280	1824;1825;1826	1826	69	3	9606
ISEQFTAMFR	Unmodified	1228.591	0.59104341	81;258;312;308	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	4.5	0.5				1	1	20.312	20.312	2	3.2840999999999997E-59	15253	DP1141_4	194.2	102.88			12679000	747	81;258;312;308	705	1281;1282	1827;1828	1827		2	9606
ISGLIYEETR	Unmodified	1179.6136	0.61355299	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	4.5	1		1		1	6	18.196	18.196	2	1.9426E-154	11387	DP1141_5	233.57	142.86			14475000000	748	242	706	1283;1284;1285;1286;1287;1288;1289;1290	1829;1830;1831;1832;1833;1834;1835;1836;1837;1838	1831		9	9606
ISISTSGGSFR	Unmodified	1110.5669	0.56693715	13	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	2	0		1				17.381	17.381	2	0.011451	9877	DP1141_2	101.46	35.387		+	0	749	13	707	1291	1839	1839		1	9606
ISLGLPVGAVINCADNTGAK	Unmodified	1969.0303	0.030260856	243	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	21.136	21.136	2	0.025224	16019	DP1141_5	82.529	50.099			83423000	750	243	708	1292	1840	1840		1	9606
ISLLLDPGSFVESDMFVEHR	Oxidation (M)	2306.1253	0.12528345	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		22.369	22.369	3	5.1201E-20	18284	DP1141_4	128.44	99.812			23854000	751	73	709	1293;1294	1841;1842;1843;1844	1844	54	3	9606
ISLPLPNFSSLNLR	Unmodified	1569.8879	0.88787736	85	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			22.901	22.901	2	2.0627999999999998E-87	18031	DP1141_3	217.02	193.64			10681000	752	85	710	1295	1845;1846	1846		2	9606
ISLPVILMDETLK	Unmodified	1470.8368	0.83675299	112	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1	0	1					23.393	23.393	2	0.036628	18993	DP1141_1	86.463	53.712			2433500	753	112	711	1296	1847	1847		1	9606
ISRMEKMTMMMK	Acetyl (Protein N-term);Oxidation (M)	1573.7159	0.71586805	303	Q13103	SPP2	Secreted phosphoprotein 24	yes	yes	1	1	2	2	0		1				16.875	16.875	2	0.035806	9064	DP1141_2	49.06	7.6333			0	754	303	712	1297	1848	1848	270;271	1	9606
ISVMGGEQAANVLATITK	Unmodified	1801.9608	0.96078431	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			21.822	21.822	2	0	16370	DP1141_3	284.91	254.98			227180000	755	436	713	1298;1299	1849;1850	1850		2	9606
ISVMGGEQAANVLATITK	Oxidation (M)	1817.9557	0.95569893	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.75	0.829			2	1	1	20.744	20.744	2;3	0	14872	DP1141_3	261.41	227.54			313850000	756	436	713	1300;1301;1302;1303	1851;1852;1853;1854;1855;1856;1857	1853	359	6	9606
ISVYYNEATGGK	Unmodified	1300.6299	0.62993134	81	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	4	1			1		1	17	17	2	3.1130999999999996E-214	9074	DP1141_3	244.8	181.58			388200000	757	81	714	1304;1305	1858;1859;1860	1858		3	9606
ITDIIGKEEGIGPENLR	Unmodified	1852.9894	0.9894419	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				18.693	18.693	2;3	1.7460999999999998E-219	11958	DP1141_1	242.91	185.56			674570000	758	302	715	1306;1307;1308	1861;1862;1863;1864;1865;1866;1867	1865		7	9606
ITLIIGGSYGAGNYGMCGR	Oxidation (M)	1974.9292	0.9291666	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.104	20.104	2	5.511E-06	13914	DP1141_3	113.52	102.58			35604000	759	436	716	1309	1868;1869	1868	360	2	9606
ITPENLPQILLQLK	Unmodified	1618.9658	0.96579333	180	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				23.32	23.32	2	1.1389E-86	18804	DP1141_2	202.96	159.54			37850000	760	180	717	1310	1870;1871	1871		2	9606
ITSENPDEGFKPSSGTVQELNFR	Unmodified	2551.2191	0.2190605	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1	0	1					18.759	18.759	3	7.7763E-06	12123	DP1141_1	94.707	78.479			798030000	761	302;31	718	1311	1872	1872		1	9606
ITVTSEVPFSK	Unmodified	1206.6496	0.64960415	158	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	5	0					1	18.297	18.297	2	0.0022134	11627	DP1141_5	114.51	56.915			106720000	762	158	719	1312	1873;1874	1873		2	9606
IVALNAHTFLR	Unmodified	1253.7244	0.72444085	126	P22087;A6NHQ2	FBL;FBLL1	rRNA 2'-O-methyltransferase fibrillarin;rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	yes	no	0	0	0	4	0				1		18.683	18.683	3	0.0095116	12696	DP1141_4	106.18	68.834			22390000	763	126	720	1313	1875;1876	1876		2	9606
IVDDDVSWTAISTTK	Unmodified	1649.8148	0.81483158	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	5	0					1	19.694	19.694	2	2.1075E-09	13821	DP1141_5	144.57	93.781			43554000	764	412	721	1314	1877	1877		1	9606
IVGDLAQFMVQNGLSR	Unmodified	1746.9087	0.90868916	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		22.293	22.293	2	3.0249E-235	17154	DP1141_3	243.4	191.33			443160000	765	101	722	1315;1316;1317;1318	1878;1879;1880;1881;1882;1883;1884	1882		7	9606
IVGDLAQFMVQNGLSR	Oxidation (M)	1762.9036	0.90360378	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	1		1		1		20.199	20.199	2	4.7767E-30	15113	DP1141_4	169.58	126.16			271920000	766	101	722	1319;1320	1885;1886	1886	121	2	9606
IVGLQYK	Unmodified	819.48544	0.48543935	100;277	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	1.5	0.5	1	1				16.915	16.915	2	0.0030703	8932	DP1141_1	120.76	15.555			239160000	767	100;277	723	1321;1322	1887;1888;1889;1890	1887		4	9606
IVQAEGEAEAAK	Unmodified	1214.6143	0.61428128	404	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		14.214	14.214	2	4.904E-19	5642	DP1141_4	167.93	105.73			56441000	768	404	724	1323	1891;1892	1891		2	9606
IVQMTEAEVR	Oxidation (M)	1190.5965	0.59652272	226	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	1	0	4.5	0.5				1	1	14.515	14.515	2	5.6731E-06	6110	DP1141_4	154.12	97.397			276850000	769	226	725	1324;1325	1893;1894;1895	1893	195	3	9606
IVVNLTGR	Unmodified	870.5287	0.52870115	229	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	17.354	17.354	2	1.485E-15	10001	DP1141_5	167.82	79.182			278640000	770	229	726	1326	1896	1896		1	9606
IVYLYTK	Unmodified	898.51641	0.51640513	190	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	17.504	17.504	2	1.9674E-26	10248	DP1141_5	164.1	82.386			341470000	771	190	727	1327	1897	1897		0	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Oxidation (M)	2640.3006	0.30062206	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			20.113	20.113	3	1.31E-18	13849	DP1141_3	140.48	115.01			378300000	772	399	728	1328;1329;1330	1898;1899;1900;1901;1902;1903	1902	337	6	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Unmodified	2624.3057	0.30570743	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		21.11	21.11	3	1.0073E-18	15562	DP1141_1	140.59	120.87			194860000	773	399	728	1331;1332;1333;1334	1904;1905;1906;1907;1908;1909;1910	1904		7	9606
IYGFYDECK	Unmodified	1193.5063	0.50631073	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0				1		18.695	18.695	2	3.198E-43	12897	DP1141_4	188.81	151.47			130400000	774	164;225;226	729	1335	1911;1912;1913	1912		3	9606
IYGFYDECKR	Unmodified	1349.6074	0.60742176	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			1	1		17.399	17.399	3	1.1529E-07	9693	DP1141_3	140.83	109.36			360150000	775	164;225;226	730	1336;1337	1914;1915	1914		0	9606
IYIDSNNNPER	Unmodified	1333.6262	0.62624295	271	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					15.936	15.936	2	1.7557E-24	7240	DP1141_1	172.94	114.12			11903000	776	271	731	1338	1916	1916		1	9606
KADVEEEFLALR	Unmodified	1418.7405	0.74054442	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	3	0			1			19.804	19.804	3	0.0055981	13336	DP1141_3	99.732	29.868			4781600	777	182	732	1339	1917	1917		0	9606
KAEGEPQEESPLK	Unmodified	1440.7096	0.70963822	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		1				14.339	14.339	2	8.2885E-16	5117	DP1141_2	185.3	105.06			9763200	778	456	733	1340	1918	1918		1	9606
KAEPSEVDMNSPK	Unmodified	1430.6711	0.67114423	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	2	0		1				14.182	14.182	3	0.037856	4796	DP1141_2	54.871	18.24			3099800	779	443	734	1341	1919	1919		0	9606
KAEVNTIPGFDGVVKDAEEAVR	Unmodified	2343.207	0.20703925	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	1	0	1					20.364	20.364	4	0.029132	14502	DP1141_1	60.735	28.369			6820700	780	72	735	1342	1920	1920		0	9606
KAGPGSLELCGLPSQK	Unmodified	1640.8556	0.85559095	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	0.816		2	2	2		17.431	17.431	2;3	7.2132E-266	10698	DP1141_4	257.04	137.76			659820000	781	316	736	1343;1344;1345;1346;1347;1348	1921;1922;1923;1924;1925;1926;1927;1928;1929;1930	1927		10	9606
KAGTATSPAGSSPAVAGGTQR	Unmodified	1870.9497	0.94970235	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2.5	0.5		1	1			13.695	13.695	3	2.5256E-17	4012	DP1141_2	126.26	94.8			15061000	782	307	737	1349;1350	1931;1932;1933;1934	1931		4	9606
KALAAAGYDVEK	Unmodified	1234.6558	0.65575216	111;95	P16403;P16402;Q02539;P22492;P10412	HIST1H1C;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.4	no	no	0	0	1	4	0				3		15.101	15.101	2;3	3.5302E-70	7090	DP1141_4	179.94	97.985			289650000	783	111;95	738	1351;1352;1353	1935;1936;1937	1937		2	9606
KALAAAGYDVEKNNSR	Unmodified	1705.8747	0.87474649	111;95	P16403;P16402;Q02539;P22492;P10412	HIST1H1C;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.4	no	no	0	0	2	4	0				1		14.526	14.526	3	1.894E-60	6117	DP1141_4	244	203.52			0	784	111;95	739	1354	1938	1938		1	9606
KASGPPVSELITK	Unmodified	1325.7555	0.7554662	111;95	P16403;P16402;P10412	HIST1H1C;HIST1H1D;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.4	no	no	0	0	1	4	0				2		16.463	16.463	2;3	4.2062E-23	9216	DP1141_4	169.09	124.01			2766900000	785	111;95	740	1355;1356	1939;1940;1941;1942;1943;1944;1945;1946	1945		8	9606
KAVVVCPKDEDYK	Unmodified	1549.781	0.78102903	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	2	0		1				14.252	14.252	3	0.031638	4853	DP1141_2	73.273	45.944			8562800	786	272	741	1357	1947	1947		0	9606
KDCEVVMMIGLPGAGK	2 Oxidation (M)	1735.8307	0.83069811	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	2	1	2	0		1				17.597	17.597	3	0.01239	10072	DP1141_2	61.649	39.156			17127000	787	272	742	1358	1948	1948	227;228	1	9606
KDIENQYETQITQIEHEVSSSGQEVQSSAK	Unmodified	3391.6016	0.60155092	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1					20.536	20.536	4	0.028197	14863	DP1141_1	38.553	22.278		+	20274000	788	14	743	1359	1949	1949		1	9606
KEFSPFGTITSAK	Unmodified	1411.7347	0.73473076	102	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	1	3	0			1			18.304	18.304	2	5.2211999999999997E-23	11002	DP1141_3	179.67	118.84			7647100	789	102	744	1360	1950	1950		1	9606
KESYSIYVYK	Unmodified	1278.6496	0.64960415	133	Q16778;P33778;P23527;Q8N257	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B	no	no	0	0	1	5	0					1	17.025	17.025	2	0.0054421	9400	DP1141_5	131.52	63.293			4565400000	790	133	745	1361	1951;1952;1953	1951		3	9606
KESYSVYVYK	Unmodified	1264.634	0.63395408	47;216	P57053;O60814;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	1	5	0					2	16.387	16.387	2;3	3.3129E-59	8493	DP1141_5	197.79	140.98			8284599999.999999	791	47;216	746	1362;1363	1954;1955;1956;1957	1955		3	9606
KEVKEELSAVER	Unmodified	1415.762	0.76200815	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2.5	0.5		1	1			14.82	14.82	3	1.3935E-64	5861	DP1141_2	199.4	167.24			63132000	792	182	747	1364;1365	1958;1959	1958		2	9606
KFEEEGNPYYSSAR	Unmodified	1675.7478	0.74781464	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	1.8	0.748	2	2	1			16.179	16.179	2;3	0	7675	DP1141_3	292.39	253.81			341190000	793	436	748	1366;1367;1368;1369;1370	1960;1961;1962;1963;1964	1964		4	9606
KFGDPVVQSDMK	Oxidation (M)	1365.6599	0.65985126	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	1	1	5	0					1	15.163	15.163	2	0.0074614	6382	DP1141_5	88.596	47.714			7545600	794	93	749	1371	1965;1966	1965	100	2	9606
KFGYVDFESAEDLEK	Unmodified	1775.8254	0.82539626	123	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0			1			19.704	19.704	3	0.016432	13254	DP1141_3	74.296	54.769			134220000	795	123	750	1372	1967	1967		0	9606
KFLDGIYVSEK	Unmodified	1297.6918	0.69180331	154	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	1	5	0					1	18.27	18.27	2	0.018726	11507	DP1141_5	97.163	33.629			0	796	154	751	1373	1968	1968		1	9606
KFYPLEIDYGQDEEAVKK	Unmodified	2171.0787	0.078650837	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0.816	1	1	1			18.687	18.687	3	5.4388E-36	11989	DP1141_2	167.95	131.84			342900000	797	89	752	1374;1375;1376	1969;1970;1971;1972;1973	1971		4	9606
KGDEVDGVDEVAKK	Unmodified	1487.7468	0.74675201	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0		1				14.073	14.073	3	3.4496E-16	4794	DP1141_2	154.13	110.37			22902000	798	89	753	1377	1974	1974		1	9606
KGHAVGDIPGVR	Unmodified	1204.6677	0.66765425	232	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	1	3.67	1.89	1				2	14.825	14.825	3	0.00043353	5531	DP1141_1	114.87	34.882			24296000	799	232	754	1378;1379;1380	1975;1976;1977;1978	1976		4	9606
KGSEHQAIVQHLEK	Unmodified	1602.8478	0.84780346	317	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	1	0	1					14.066	14.066	3	0.00088433	4380	DP1141_1	122.78	98.849			4851100	800	317	755	1381	1979;1980	1979		2	9606
KGTHFVQLCCQR	Unmodified	1532.734	0.73403603	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2	1	1		1			15.232	15.232	3	2.1381E-05	6149	DP1141_3	145.23	110.22			461130000	801	436	756	1382;1383	1981;1982;1983;1984	1984		4	9606
KHADSMAELGEQIDNLQR	Unmodified	2053.9851	0.98510158	103	P13535	MYH8	Myosin-8	yes	yes	0	0	1	2	0		1				19.9	19.9	2	0.0010297	13861	DP1141_2	99.5	55.82			104630000	802	103	757	1384	1985	1985		1	9606
KHHLQPENPGPGGAAPSLEQNR	Unmodified	2333.1625	0.16248909	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.75	0.829		4	2	2		15.133	15.133	2;3;4;5	6.595100000000001E-183	6255	DP1141_2	222.54	177.45			2322700000	803	316	758	1385;1386;1387;1388;1389;1390;1391;1392	1986;1987;1988;1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002;2003	1988		18	9606
KHPSSPECLVSAQK	Unmodified	1566.7824	0.78242601	323	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	1	2	0		1				14.482	14.482	3	0.0040633	5277	DP1141_2	96.135	50.778			2305300	804	323	759	1393	2004	2004		1	9606
KIAPYVAHNFSK	Unmodified	1373.7456	0.74557022	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.67	1.25	1		1	1		15.358	15.358	3	1.1421E-09	6278	DP1141_3	142.19	99.95			117350000	805	101	760	1394;1395;1396	2005;2006;2007;2008	2007		3	9606
KIDKYTEVLK	Unmodified	1235.7125	0.71253876	173	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	2	5	0					1	15.41	15.41	3	0.021053	6715	DP1141_5	131.09	64.466			37658000	806	173	761	1397	2009	2009		1	9606
KIEPFYK	Unmodified	923.51165	0.5116541	294	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	1	1	0	1					15.936	15.936	2	0.029558	7242	DP1141_1	102.77	52.749			16318000	807	294	762	1398	2010	2010		0	9606
KIGEEEIQKPEEK	Unmodified	1555.8094	0.80935227	331	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	2	2	0		1				14.163	14.163	3	1.2091E-05	4799	DP1141_2	118.73	74.291			0	808	331	763	1399	2011	2011		1	9606
KIHNANPELTDGQIQAMLR	Oxidation (M)	2164.1059	0.10588542	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					16.932	16.932	3;4	7.985899999999999E-38	8990	DP1141_1	169.06	139.63			99642000	809	302	764	1400;1401	2012;2013;2014	2013	248	3	9606
KKEENSTEEQALEDQNAK	Unmodified	2089.9764	0.97637061	442	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	2	3	0			1			14.103	14.103	3	0.00014319	4491	DP1141_3	97.352	49.064			4565000	810	442	765	1402	2015	2015		1	9606
KKHHLQPENPGPGGAAPSLEQNR	Unmodified	2461.2575	0.25745211	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2.71	0.7		3	3	1		14.943	14.943	3;4;5	7.9912E-17	6024	DP1141_2	136.11	99.852			604920000	811	316	766	1403;1404;1405;1406;1407;1408;1409	2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027	2019		10	9606
KKPLDGEYFTLQIR	Unmodified	1706.9356	0.93555583	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	2	3.5	0.5			2	2		18.8	18.8	2;3;4	0	11885	DP1141_3	250.81	230.73			545930000	812	67	767	1410;1411;1412;1413	2028;2029;2030;2031;2032	2028		3	9606
KLAAAEGLEPK	Unmodified	1125.6394	0.63937381	176	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4.5	0.5				1	1	15.104	15.104	2	2.7644000000000003E-47	7057	DP1141_4	192.44	106.58			157170000	813	176	768	1414;1415	2033;2034;2035;2036	2033		4	9606
KLASASLLDTDKR	Unmodified	1416.7936	0.79364262	455	Q9NY61	AATF	Protein AATF	yes	yes	0	0	2	3	0			1			15.611	15.611	3	0.00088216	6604	DP1141_3	120.6	92.397			12479000	814	455	769	1416	2037	2037		0	9606
KLAVNMVPFPR	Oxidation (M)	1286.7169	0.71691263	81;258;312;308	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3;TUBB1	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-1 chain	no	no	0	1	1	3.33	0.471			2	1		17.601	17.601	2;3	0.00070208	9895	DP1141_3	130.56	107.92			253450000	815	81;258;312;308	770	1417;1418;1419	2038;2039;2040	2038	70	3	9606
KLDAEDVIGSR	Unmodified	1201.6303	0.63026569	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.5		1	1			16.751	16.751	2	2.6832E-08	8552	DP1141_3	145.46	75.859			167670000	816	182	771	1420;1421	2041;2042	2042		1	9606
KLDQEMEQLNHHTTTR	Oxidation (M)	1995.9432	0.94323676	384	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	1	1	2	0		1				13.017	13.017	4	0.00011768	3162	DP1141_2	110.57	77.133			4362500	817	384	772	1422	2043;2044	2043	323	2	9606
KLFIGGLSFETTDESLR	Unmodified	1911.9942	0.99419293	88	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				2		20.796	20.796	2;3	0	16028	DP1141_4	245.5	173.3			96083000	818	88	773	1423;1424	2045;2046	2046		1	9606
KLFIGGLSFETTEESLR	Unmodified	1926.0098	0.0098429899	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				2		20.896	20.896	2;3	0	16137	DP1141_4	296.97	207.41			108960000	819	128	774	1425;1426	2047;2048;2049	2048		3	9606
KLFVGGIKEDTEEHHLR	Unmodified	2007.0538	0.05377349	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	2	4	0				2		15.726	15.726	3;4	1.3111E-36	7901	DP1141_4	170.42	0			244810000	820	128	775	1427;1428	2050;2051;2052	2051		3	9606
KLGVQTVAVYSEADR	Unmodified	1634.8628	0.86278482	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.5	1.12	1	1	1	1		17.262	17.262	2;3	2.9292E-297	9422	DP1141_3	264.09	188.44			216340000	821	399	776	1429;1430;1431;1432	2053;2054;2055;2056;2057;2058;2059	2056		7	9606
KLHYNEGLNIK	Unmodified	1327.7248	0.72483478	176	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4.33	0.471				2	1	15.638	15.638	2;3	2.1313E-17	7918	DP1141_4	168.22	136.21			363780000	822	176	777	1433;1434;1435	2060;2061;2062	2060		3	9606
KLYDIDVAK	Unmodified	1063.5914	0.59136099	240	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	16.584	16.584	2	3.7497E-09	8718	DP1141_5	157.99	105.59			194200000	823	240	778	1436	2063	2063		1	9606
KMVDPEKPQLGMIDR	2 Oxidation (M)	1787.891	0.89099018	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	2	2	0		1				15.419	15.419	3	0.01107	6612	DP1141_2	59.513	23.068			122520000	824	89	779	1437	2064;2065	2064	89;90	2	9606
KMVDPEKPQLGMIDR	Oxidation (M)	1771.8961	0.89607556	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	2	2	0		1				16.195	16.195	3	0.0035824	8157	DP1141_2	82.529	49.714			37704000	825	89	779	1438	2066	2066	89;90	1	9606
KNLLVTMLIDQLCGR	Oxidation (M)	1788.959	0.95901017	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					22.559	22.559	2;3	8.3276E-07	17615	DP1141_1	141.06	110.84			15157000	826	302	780	1439;1440	2067;2068;2069;2070	2069	250	4	9606
KNPASLPLTQAALK	Unmodified	1450.8508	0.85076357	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2.33	0.471		2	1			17.199	17.199	2;3	7.7135E-06	9620	DP1141_2	139.19	109.19			187950000	827	307	781	1441;1442;1443	2071;2072;2073	2071		2	9606
KPASGPGAVVRPPK	Unmodified	1359.7987	0.79866842	422	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	2	3	0			1			13.638	13.638	3	0.0085566	3667	DP1141_3	122.1	100.02			5328500	828	422	782	1444	2074	2074		1	9606
KPLLSPIPELPEVPEMTPSIPSIR	Oxidation (M)	2655.4557	0.45572572	346	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	1	1	2	0		1				21.38	21.38	3	0.027697	15886	DP1141_2	55.063	36.019			11690000	829	346	783	1445	2075	2075	302	0	9606
KPLPDHVSIVEPKDEILPTTPISEQK	Unmodified	2909.575	0.57498923	132	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	4	0				1		18.294	18.294	4	0.012695	12173	DP1141_4	53.496	35.849			92586000	830	132	784	1446	2076	2076		1	9606
KPPLLNNADSVQAK	Unmodified	1493.8202	0.82019173	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		2				15.419	15.419	2;3	1.486E-11	6742	DP1141_2	152.4	116.75			828580000	831	89	785	1447;1448	2077;2078	2078		2	9606
KPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGK	Unmodified	3492.7664	0.76642087	286	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			2			13.969	13.969	5;7	1.2958E-06	4160	DP1141_3	62.069	51.316			12668000	832	286	786	1449;1450	2079;2080;2081;2082;2083;2084	2081		6	9606
KPVGEVHSQFSTGHANSPCTIIIGK	Unmodified	2663.349	0.34896923	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.739	16.739	4	1.2991E-09	8857	DP1141_2	102.27	80.27			85617000	833	182	787	1451	2085;2086	2086		2	9606
KQGTIFLAGPPLVK	Unmodified	1467.8813	0.88133542	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.6	1.36	2		1	2		18.922	18.922	2;3	3.9834E-16	12154	DP1141_3	160.15	140.91			272410000	834	436	788	1452;1453;1454;1455;1456	2087;2088;2089;2090;2091;2092;2093;2094;2095	2092		9	9606
KQTTLAFKPIK	Unmodified	1273.7758	0.77580772	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	2	2	0		1				15.38	15.38	3	0.010268	6748	DP1141_2	102.4	53.211			13275000	835	100	789	1457	2096	2096		0	9606
KQVVNIPSFIVR	Unmodified	1398.8347	0.83471958	186	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					2	19.304	19.304	2;3	0.0026223	13249	DP1141_5	93.839	79.06			105370000	836	186	790	1458;1459	2097;2098	2098		2	9606
KREELSNVLAAMR	Oxidation (M)	1531.8141	0.81406049	488	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	2	5	0					1	15.968	15.968	3	0.012845	7734	DP1141_5	81.565	45.756			240530000	837	488	791	1460	2099;2100	2100	386	2	9606
KSAEFLLHMLK	Unmodified	1315.7322	0.73222834	121	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	18.925	18.925	3	0.03181	12521	DP1141_5	74.237	49.111			12095000	838	121	792	1461	2101	2101		0	9606
KSDVEAIFSK	Unmodified	1122.5921	0.59208927	83	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		17.083	17.083	2	1.602E-77	10216	DP1141_4	220.82	119.49			0	839	83	793	1462	2102	2102		1	9606
KSEDGTPAEDGTPAATGGSQPPSMGR	Oxidation (M)	2516.1085	0.10852377	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	1	3	1		1		1		14.32	14.32	3	2.6102E-25	5111	DP1141_2	137.85	117.45			31408000	840	410	794	1463;1464	2103;2104;2105;2106	2104	349	4	9606
KSFNDDAMLIEK	Oxidation (M)	1425.681	0.68098063	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.75	1.09	1		2	1		16.54	16.54	2;3	6.7318E-09	8184	DP1141_3	155.47	86.816			144670000	841	399	795	1465;1466;1467;1468	2107;2108;2109;2110	2108	338	3	9606
KSGVSDHWALDDHHALHLTR	Unmodified	2294.1305	0.13046068	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.88	1.05	1	2	2	3		16.644	16.644	3;4;5	1.6921E-207	8500	DP1141_3	232.6	199.74			562170000	842	436	796	1469;1470;1471;1472;1473;1474;1475;1476	2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122;2123;2124	2118		14	9606
KTASVLSKDDVAPESGDTTVK	Unmodified	2147.0958	0.095757464	56	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			15.26	15.26	3	0.0039719	6347	DP1141_3	90.464	63.14			4000500	843	56	797	1477	2125	2125		1	9606
KTCTTVAFTQVNSEDKGALAK	Unmodified	2268.142	0.14199615	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	2	4	0				1		16.206	16.206	3	3.7884E-54	8819	DP1141_4	172.55	133.2			25808000	844	239	798	1478	2126	2126		1	9606
KTEELEEESFPER	Unmodified	1621.7471	0.74714594	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		2				16.541	16.541	2;3	7.7385E-196	8543	DP1141_2	287.29	196.38			105530000	845	482	799	1479;1480	2127;2128;2129;2130	2129		4	9606
KTGQPMINLYTDR	Unmodified	1535.7766	0.77661235	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3	0			1			17.504	17.504	3	0.035807	9962	DP1141_3	50.806	37.388			17376000	846	161	800	1481	2131	2131		1	9606
KTHQPSDEVGTSIEHPR	Unmodified	1916.9341	0.93405228	403	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	1	2	0		1				14.152	14.152	4	0.0051815	4717	DP1141_2	68.576	50.164			4064700	847	403	801	1482	2132	2132		1	9606
KTPESKPTILVK	Unmodified	1339.8075	0.80750177	485	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	2	4	0				1		14.087	14.087	3	0.0024271	5482	DP1141_4	117.86	74.884			19284000	848	485	802	1483	2133	2133		1	9606
KTTHFVEGGDAGNREDQINR	Unmodified	2243.0679	0.067920004	119	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	4.33	0.471				2	1	14.257	14.257	3;4	2.1927E-08	5774	DP1141_4	112.57	98.414			148010000	849	119	803	1484;1485;1486	2134;2135;2136;2137	2134		2	9606
KTVTAMDVVYALK	Oxidation (M)	1453.7851	0.78505177	242	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	18.338	18.338	2;3	1.6806E-16	11620	DP1141_5	158.01	158.01			1966499999.9999998	850	242	804	1487;1488	2138;2139;2140;2141	2140	201	4	9606
KTVTAMDVVYALK	Unmodified	1437.7901	0.79013715	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.805	19.805	3	9.1974E-05	13943	DP1141_5	129.54	90.358			1033799999.9999999	851	242	804	1489	2142	2142		0	9606
KTVTAMDVVYALKR	Oxidation (M)	1609.8862	0.8861628	242	P62805	HIST1H4A	Histone H4	yes	yes	0	1	2	5	0					2	17.798	17.798	2;3	6.6166E-125	10728	DP1141_5	214.48	178.7			771800000	852	242	805	1490;1491	2143;2144;2145	2144	201	3	9606
KTVTAMDVVYALKR	Unmodified	1593.8912	0.89124818	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	2	5	0					1	18.969	18.969	3	1.2652E-42	12755	DP1141_5	180.11	150.08			736070000	853	242	805	1492	2146;2147	2146		2	9606
KVACIGAWHPAR	Unmodified	1364.7136	0.71355858	171	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	1	2.5	1.5	1			1		15.682	15.682	3	0.0028666	6866	DP1141_1	124.67	82.04			120080000	854	171	806	1493;1494	2148;2149	2148		1	9606
KVEEAEPEEFVVEK	Unmodified	1660.8196	0.8195826	305	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	1	5	0					2	17.123	17.123	2;3	4.645E-87	9644	DP1141_5	206.46	154.3			346420000	855	305	807	1495;1496	2150;2151;2152	2151		3	9606
KVEEVLEEEEEEYVVEK	Unmodified	2108.0049	0.004876771	267	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	1	5	0					1	19.304	19.304	2	0	13227	DP1141_5	308	232.26			66878000	856	267	808	1497	2153	2153		1	9606
KVEWTSDTVDNEHMGR	Oxidation (M)	1918.8479	0.84793939	49	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	1	5	0					2	15.203	15.203	3;4	0.00012443	6418	DP1141_5	124.04	97.809			69024000	857	49	809	1498;1499	2154;2155;2156	2154	36	3	9606
KVMLALPSVR	Oxidation (M)	1128.6689	0.6688998	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	1	4	0				1		17.574	17.574	2	0.0087698	10915	DP1141_4	93.649	41.794			35518000	858	330	810	1500	2157	2157	293	0	9606
KVNNADDFPNLFR	Unmodified	1548.7685	0.76849051	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					19.335	19.335	2;3	1.4613E-56	12826	DP1141_1	192.44	145.21			967220000	859	302	811	1501;1502	2158;2159	2158		2	9606
KVPQVSTPTLVEVSR	Unmodified	1638.9305	0.93047046	9	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	1	3.5	0.5			1	1		17.649	17.649	3	0.023585	11067	DP1141_4	59.634	41.431		+	47795000	860	9	812	1503;1504	2160;2161	2161		1	9606
KVTFGLNR	Unmodified	933.5396	0.53960019	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	0.816		1	1	1		15.891	15.891	2	1.1642000000000001E-54	8349	DP1141_4	196.98	125.03			806760000	861	316	813	1505;1506;1507	2162;2163;2164;2165	2165		4	9606
KVTHAVVTVPAYFNDAQR	Unmodified	2015.0589	0.058858868	97	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			17.704	17.704	3	0.026881	10064	DP1141_3	46.877	23.548			9670600	862	97	814	1508	2166	2166		1	9606
KVVGCSCVVVK	Unmodified	1233.6573	0.65734884	135	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	1	5	0					1	14.386	14.386	3	0.0058995	5137	DP1141_5	103.43	51.042			15505000	863	135	815	1509	2167	2167		1	9606
KVVNPLFEK	Unmodified	1072.6281	0.62808085	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	3	2	1				1	16.686	16.686	2	4.6414E-43	8594	DP1141_1	190.62	138.84			56096000	864	239	816	1510;1511	2168;2169;2170	2169		3	9606
LAAAEGLEPK	Unmodified	997.54441	0.5444108	176	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4.5	0.5				1	1	16.015	16.015	2	0.018733	8427	DP1141_4	98.582	39.8			89554000	865	176	817	1512;1513	2171;2172	2171		1	9606
LAADDFR	Unmodified	806.39227	0.39226725	12;5;10	P13645;CON__P13645;CON__P02535-1;CON__Q7Z3Y7;CON__Q148H6;Q7Z3Y7;CON__A2A4G1;CON__Q497I4;CON__A2AB72;CON__O76015;CON__Q14525;CON__P19001;CON__O76013;CON__O76014;CON__REFSEQ:XP_986630;CON__P08730-1;CON__Q2M2I5;CON__P08727;CON__A2A5Y0;Q15323;CON__Q14532;CON__Q15323;CON__Q9UE12;Q14525;Q2M2I5;O76014;CON__P05784;O76013;O76015;P05783;P08727;Q92764;Q14532;CON__Q92764;CON__P02533;P02533;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8;CON__ENSEMBL:ENSP00000377550;CON__Q04695;CON__Q9QWL7;CON__P19012;Q04695;P19012;P13646;CON__P08779;P08779	KRT10;KRT28;KRT31;KRT33B;KRT24;KRT37;KRT36;KRT38;KRT18;KRT19;KRT35;KRT32;KRT14;KRT17;KRT15;KRT13;KRT16	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha3-II;Keratin, type I cytoskeletal 24;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha6;Keratin, type I cuticular Ha8;Keratin, type I cytoskeletal 18;Keratin, type I cytoskeletal 19;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha2;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 16	no	no	0	0	0	1	0	1					16.507	16.507	2	4.3928E-08	8254	DP1141_1	153.61	79.016		+	330590000	866	12;5;10	818	1514	2173;2174	2174		2	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK	Unmodified	4117.4483	0.44832088	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		17.894	17.894	3	1.4235E-70	11542	DP1141_4	159.75	159.75			465790000	867	80	819	1515	2175;2176;2177;2178;2179	2176		5	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK	Unmodified	4245.5433	0.5432839	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4.2	0.748			1	2	2	16.979	16.979	3;4	1.1942E-112	10096	DP1141_4	178.44	172.23			2921799999.9999995	868	80	820	1516;1517;1518;1519;1520	2180;2181;2182;2183;2184;2185;2186;2187;2188	2181		9	9606
LAAQSCALSLVR	Unmodified	1287.6969	0.69690547	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					18.558	18.558	2	0.03266	11675	DP1141_1	85.355	0			53669000	869	288	821	1521	2189	2189		1	9606
LAELEEALQK	Unmodified	1142.6183	0.61830402	13	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	4.5	0.5				1	1	18.337	18.337	2	0.0089261	11598	DP1141_5	104.06	58.377		+	17097000	870	13	822	1522;1523	2190;2191	2191		1	9606
LALGQINIAK	Unmodified	1039.639	0.63897988	420	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1	0	1					18.948	18.948	2	0.010565	12264	DP1141_1	104.75	69.128			0	871	420	823	1524	2192	2192		1	9606
LALKEDKFPR	Unmodified	1215.6976	0.69755739	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	2	3	1		1		1		15.708	15.708	3	0.030054	7140	DP1141_2	133.13	84.153			24038000	872	410	824	1525;1526	2193;2194	2193		1	9606
LAPDYDALDVANK	Unmodified	1403.6933	0.69325988	240	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	18.614	18.614	2	7.5663E-05	12075	DP1141_5	136.96	105.32			454630000	873	240	825	1527	2195;2196	2195		2	9606
LAQHITYVHQHSR	Unmodified	1588.8223	0.82225741	155	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			13.575	13.575	3	0.0017948	3730	DP1141_3	129.54	89.022			955100	874	155	826	1528	2197	2197		1	9606
LAQQMENRPSVQAALK	Oxidation (M)	1798.936	0.93596654	489	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	1	4	0				1		15.472	15.472	3	0.0092869	7580	DP1141_4	85.837	40.753			24175000	875	489	827	1529	2198	2198	388	1	9606
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	Unmodified	2773.4246	0.4246366	75	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					2	17.798	17.798	2;3	7.2773E-08	10908	DP1141_5	69.197	59.868			89920000	876	75	828	1530;1531	2199;2200	2199		2	9606
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK	Unmodified	3273.6841	0.68409876	75	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	2	5	0					1	16.588	16.588	4	4.3028E-83	8774	DP1141_5	165.6	148.09			115630000	877	75	829	1532	2201	2201		1	9606
LAVNMVPFPR	Oxidation (M)	1158.6219	0.62194961	81;258;312;308	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3;TUBB1	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-1 chain	no	no	0	1	0	2.5	1.12	1	1	1	1		18.829	18.829	2	6.6427E-34	13011	DP1141_4	180.93	124.2			411650000	878	81;258;312;308	830	1533;1534;1535;1536	2202;2203;2204;2205;2206	2206	70	5	9606
LAVSAQSEPAR	Unmodified	1127.5935	0.59348625	55	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					14.751	14.751	2	0.00063113	5508	DP1141_1	134.77	80.608			6301300	879	55	831	1537	2207	2207		0	9606
LCLISTFLEDGIR	Unmodified	1535.8018	0.80176447	39	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	1	0	1					23.448	23.448	2	0.012915	19111	DP1141_1	107.45	66.461			4523500	880	39	832	1538	2208	2208		1	9606
LCNCKQK	Unmodified	949.44736	0.44735606	156	P34981	TRHR	Thyrotropin-releasing hormone receptor	yes	yes	0	0	1	1	0	1					20.336	20.336	1	0.011389	14432	DP1141_1	91.093	9.7967			50042000	881	156	833	1539	2209	2209		0	9606
LDADLLVPASVK	Unmodified	1239.7075	0.70745338	379	Q8WWQ0	PHIP	PH-interacting protein	yes	yes	0	0	0	4	0				1		19.898	19.898	2	0.0013142	14568	DP1141_4	131.09	68.98			8738800	882	379	834	1540	2210	2210		1	9606
LDALSNFHFIPKPPVPEIK	Unmodified	2161.1936	0.19356144	28	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2	0		1				20.554	20.554	3	0.014093	14761	DP1141_2	110.26	90.326			0	883	28	835	1541	2211	2211		1	9606
LDGLVETPTGYIESLPR	Unmodified	1858.9676	0.96764382	214	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3	0			1			21.406	21.406	2	0.00017031	15936	DP1141_3	122.33	92.12			11856000	884	214	836	1542	2212	2212		1	9606
LDHKFDLMYAK	Unmodified	1379.6908	0.69075746	257;409	P68363;P68366;A6NHL2;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65	TUBA1B;TUBA4A;TUBAL3;TUBA1C;TUBA1A;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain	no	no	0	0	1	3	0			1			17.504	17.504	3	0.014524	9875	DP1141_3	98.754	81.033			188550000	885	257;409	837	1543	2213	2213		1	9606
LDHKFDLMYAK	Oxidation (M)	1395.6857	0.68567208	257;409	P68363;P68366;A6NHL2;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65	TUBA1B;TUBA4A;TUBAL3;TUBA1C;TUBA1A;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain	no	no	0	1	1	3	0			1			16.613	16.613	3	0.024199	8253	DP1141_3	82.505	82.505			70635000	886	257;409	837	1544	2214	2214	213	0	9606
LDKAQIHDLVLVGGSTR	Unmodified	1821.0108	0.010846043	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	1	3	0			1			18.204	18.204	3	1.1017E-26	10830	DP1141_3	160.03	121.97			440820000	887	93	838	1545	2215	2215		1	9606
LDKELDDYR	Unmodified	1165.5615	0.56151742	334	Q16625	OCLN	Occludin	yes	yes	0	0	1	3	0			1			16.427	16.427	2	0.010732	8010	DP1141_3	118.74	1.8592			0	888	334	839	1546	2216	2216		1	9606
LDKSQIHDIVLVGGSTR	Unmodified	1837.0058	0.005760665	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			17.807	17.807	3	3.902E-28	10302	DP1141_3	163.44	117.9			26560000	889	98	840	1547	2217	2217		1	9606
LDLLEEK	Unmodified	858.46985	0.46984887	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.059	18.059	2	2.4828E-06	11008	DP1141_1	143.02	0			243460000	890	302	841	1548	2218	2218		1	9606
LDNASAFQGAVISPHYDSLLVK	Unmodified	2344.2063	0.20631097	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			20.414	20.414	3	4.4638E-160	14565	DP1141_1	220.17	175.59			1424500000	891	101	842	1549;1550;1551	2219;2220;2221;2222;2223;2224	2221		6	9606
LDSELKNMQDMVEDYR	2 Oxidation (M)	2016.8769	0.87685626	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	1	0	1					16.749	16.749	3	0.0011198	8710	DP1141_1	95.822	76.66		+	285990000	892	65	843	1552	2225	2225	40;41	1	9606
LDSSPSVSSTLAAK	Unmodified	1361.7038	0.70382456	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	0.5		1	1			16.598	16.598	2	3.0024E-33	8573	DP1141_2	177.44	126.25			91161000	893	307	844	1553;1554	2226;2227;2228	2226		3	9606
LDYLGVSYGLTPR	Unmodified	1452.7613	0.76127986	424	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					20.863	20.863	2	0.013547	15167	DP1141_1	103.34	69.42			0	894	424	845	1555	2229	2229		1	9606
LEAIITPPPAK	Unmodified	1148.6805	0.68051035	50	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		17.695	17.695	2	0.030417	11237	DP1141_4	87.149	51.793			32247000	895	50	846	1556	2230;2231	2231		2	9606
LEESVALR	Unmodified	915.50255	0.50254598	287	Q08209	PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	yes	yes	0	0	0	1	0	1					16.726	16.726	2	0.010702	8708	DP1141_1	110.63	38.495			16610000	896	287	847	1557	2232	2232		1	9606
LEGPAQHSTVVVSPPDR	Unmodified	1787.9166	0.91661131	494				yes	yes	0	0	0	5	0					1	19.22	19.22	3	0.016417	12976	DP1141_5	53.981	20.14	+		25867000	897	494	848	1558	2233	2233		1	9606
LEIATLK	Unmodified	786.48511	0.485105	418	Q9BXX3	ANKRD30A	Ankyrin repeat domain-containing protein 30A	yes	yes	0	0	0	4	0				1		18.996	18.996	1	0.00043307	13256	DP1141_4	134.66	23.385			60387000	898	418	849	1559	2234	2234		0	9606
LELAQYR	Unmodified	891.48142	0.48141661	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.204	17.204	2	2.2697E-12	9279	DP1141_3	163.34	48.756			71408000	899	137	850	1560	2235	2235		1	9606
LELQGPR	Unmodified	811.4552	0.45520186	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.6	1.02	1	1	2	1		15.91	15.91	2	2.0279E-12	7139	DP1141_3	163.34	75.76			486580000	900	123	851	1561;1562;1563;1564;1565	2236;2237;2238;2239;2240	2238		5	9606
LENEIQTYR	Unmodified	1164.5775	0.57750184	12	P13645;CON__P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	5	0					1	16.316	16.316	2	2.5049E-15	8359	DP1141_5	167.23	95.933		+	53858000	901	12	852	1566	2241	2241		1	9606
LEQMPSKEDAIEHFMK	Oxidation (M)	1947.907	0.90703418	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2	0		1				16.905	16.905	4	0.0018588	9173	DP1141_2	97.073	81.552			33013000	902	89	853	1567	2242	2242	91;92	1	9606
LFEGNALLR	Unmodified	1031.5764	0.57637963	186	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	19.233	19.233	2	0.0027102	13053	DP1141_5	139.68	57.008			253700000	903	186	854	1568	2243	2243		1	9606
LFEYGGFPPESNYLFLGDYVDR	Unmodified	2597.2115	0.21145592	164;225	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	4	0				1		24.229	24.229	2	3.7011E-10	21120	DP1141_4	127.88	96.353			3987600	904	164;225	855	1569	2244	2244		1	9606
LFIGGLSFETTDESLR	Unmodified	1783.8992	0.89922991	88	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		22.296	22.296	2	2.2387999999999997E-134	18145	DP1141_4	216.84	167.84			84721000	905	88	856	1570	2245;2246;2247	2245		3	9606
LFIGGLSFETTEESLR	Unmodified	1797.9149	0.91487997	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4.5	0.5				1	1	22.33	22.33	2	2.2036E-134	18237	DP1141_4	216.91	169.96			122920000	906	128	857	1571;1572	2248;2249;2250	2248		3	9606
LFLQGPK	Unmodified	801.47487	0.47487467	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		17.544	17.544	2	0.032431	10240	DP1141_2	106.29	36.896			245980000	907	101	858	1573;1574	2251;2252	2251		2	9606
LFNLSKEDDVR	Unmodified	1334.683	0.68302954	241	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	1	4	0				1		17.395	17.395	3	0.0064362	10742	DP1141_4	102.95	71.669			83597000	908	241	859	1575	2253	2253		0	9606
LFPDTPLALDANK	Unmodified	1413.7504	0.75038083	299	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				20.384	20.384	2	0.01112	14585	DP1141_2	96.113	63.895			13300000	909	299	860	1576	2254	2254		1	9606
LFVGGIKEDTEEHHLR	Unmodified	1878.9588	0.95881047	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				1		16.163	16.163	4	8.6281E-16	9110	DP1141_4	153.7	0			272360000	910	128	861	1577	2255;2256	2256		2	9606
LGAGEGGEASVSPEK	Unmodified	1386.6627	0.66268803	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				14.868	14.868	2	0.0019613	5866	DP1141_2	114.76	74.148			0	911	307	862	1578	2257	2257		1	9606
LGASNSPGQPNSVK	Unmodified	1354.6841	0.68409218	194	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	2	0		1				14.073	14.073	2	3.7211E-09	4663	DP1141_2	177.04	123.26			9341100	912	194	863	1579	2258	2258		1	9606
LGEWVGLCK	Unmodified	1060.5376	0.53755128	135	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	19.223	19.223	2	0.023141	13090	DP1141_5	101.6	80.902			50827000	913	135	864	1580	2259	2259		1	9606
LGFAGLVQEISFGTTK	Unmodified	1666.893	0.89302232	189	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			23.343	23.343	2	0.0013472	18725	DP1141_3	155.02	114.52			1690000	914	189	865	1581	2260	2260		1	9606
LGFDKENVYDELR	Unmodified	1596.7784	0.77838649	44	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	1	4	0				1		19.046	19.046	3	0.02551	13326	DP1141_4	89.43	70.257			0	915	44	866	1582	2261	2261		1	9606
LGGIPVGVVAVETR	Unmodified	1365.798	0.79799972	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.736	19.736	2	0.033177	13584	DP1141_1	68.536	40.331			1418000000	916	302	867	1583	2262	2262		1	9606
LGTPELSTAER	Unmodified	1172.6037	0.60371659	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	2	1				1	16.485	16.485	2	0.00095103	8159	DP1141_1	119.75	75.352			527850000	917	302	868	1584;1585	2263;2264	2263		2	9606
LGTPELSTAERK	Unmodified	1300.6987	0.69867961	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.357	15.357	3	0.0015186	6213	DP1141_1	109.39	73.068			104340000	918	302	869	1586	2265	2265		0	9606
LGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR	Unmodified	4114.0872	0.087205469	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		2	2			20.899	20.899	3;4;5	5.0099E-22	15187	DP1141_3	96.071	83.589			403690000	919	316	870	1587;1588;1589;1590	2266;2267;2268;2269;2270;2271;2272;2273	2272		8	9606
LHFFMPGFAPLTSR	Oxidation (M)	1635.8232	0.82316861	81;258;312	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.4	0.49			3	2		23.832	23.832	2;3	0.00048898	15682	DP1141_4	131.69	75.967			798190000	920	81;258;312	871	1591;1592;1593;1594;1595	2274;2275;2276;2277;2278;2279;2280	2279	71	7	9606
LHFFMPGFAPLTSR	Unmodified	1619.8283	0.82825399	81;258;312	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	3.33	0.471			2	1		21.904	21.904	2;3	0.00022009	16448	DP1141_3	97.463	66.92			367560000	921	81;258;312	871	1596;1597;1598	2281;2282;2283;2284	2281		4	9606
LHGLPEQFLYGTATK	Unmodified	1673.8777	0.8777066	277	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	2	0		1				19.386	19.386	3	0.0023935	12965	DP1141_2	65.374	37.698			10464000	922	277	872	1599	2285	2285		1	9606
LIDLHSPSEIVK	Unmodified	1349.7555	0.7554662	219	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					1	17.998	17.998	3	0.01856	11084	DP1141_5	78.342	46.911			69939000	923	219	873	1600	2286	2286		1	9606
LIIVEGCQR	Unmodified	1086.5856	0.5855641	70;104	P05023;P50993;Q13733;P54707;P13637	ATP1A1;ATP1A2;ATP1A4;ATP12A;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	1.5	0.5	1	1				16.997	16.997	2	2.8768E-11	9193	DP1141_2	150.84	58.931			72692000	924	70;104	874	1601;1602	2287;2288	2288		0	9606
LILIESR	Unmodified	842.52255	0.52255314	234	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	17.998	17.998	2	1.2104E-27	11121	DP1141_5	138.48	51.545			21312000	925	234	875	1603	2289	2289		0	9606
LILSETSIFDVLPNFFYHSNQVVR	Unmodified	2837.4752	0.4752156	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					24.81	24.81	3	3.3501E-13	20962	DP1141_1	111.66	84.096			3764000	926	302	876	1604	2290	2290		1	9606
LIPDSIGKDIEK	Unmodified	1326.7395	0.73948179	220	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		17.395	17.395	3	0.011906	10749	DP1141_4	84.605	45.645			91781000	927	220	877	1605	2291	2291		1	9606
LIQDQQEQIQHLK	Unmodified	1619.8631	0.86311917	384	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	2	0		1				16.115	16.115	3	0.0021104	7749	DP1141_2	89.805	61.078			20131000	928	384	878	1606	2292	2292		1	9606
LISQIVSSITASLR	Unmodified	1486.8719	0.87189295	257;409	P68363;P68366;Q9H853;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA4B;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	3.25	1.48	1		1	1	1	23.935	23.935	2	1.3625E-86	19622	DP1141_3	202.16	162.54			36016000	929	257;409	879	1607;1608;1609;1610	2293;2294;2295;2296;2297;2298;2299	2295		7	9606
LISSDGHEFIVK	Unmodified	1343.7085	0.70851601	327	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	5	0					2	17.423	17.423	2;3	0.016815	10155	DP1141_5	75.788	34.099			116060000	930	327	880	1611;1612	2300;2301	2301		2	9606
LISSDGHEFIVKR	Unmodified	1499.8096	0.80962704	327	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	1	5	0					1	16.284	16.284	3	0.00045764	8258	DP1141_5	137.16	92.33			21728000	931	327	881	1613	2302;2303	2302		2	9606
LITKPSEGTTLR	Unmodified	1314.7507	0.75071518	196	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	1	2.5	0.5		1	1			15.119	15.119	3	0.0040563	6274	DP1141_2	106.16	67.854			17220000	932	196	882	1614;1615	2304;2305	2304		2	9606
LITPAVVSER	Unmodified	1083.6288	0.62880913	246	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	17.428	17.428	2	0.01194	10131	DP1141_5	109.48	50.696			63488000	933	246	883	1616	2306	2306		1	9606
LITQTFSHHNQLAQK	Unmodified	1764.9271	0.92711641	479	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		15.491	15.491	3	0.0025187	7599	DP1141_4	78.287	45.279			48368000	934	479	884	1617	2307	2307		1	9606
LKECCDKPLLEK	Unmodified	1531.7738	0.77383516	9	CON__P02769			yes	yes	0	0	2	4	0				1		14.463	14.463	3	0.0042853	6060	DP1141_4	123.84	65.163		+	5051400	935	9	885	1618	2308	2308		0	9606
LKEREEFLIPIYHQVAVQFADLHDTPGR	Unmodified	3320.7306	0.73059544	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					21.437	21.437	5	0.0016169	16002	DP1141_1	51.539	44.835			29253000	936	302	886	1619	2309	2309		1	9606
LKETGYVVERPSTTK	Unmodified	1706.9203	0.9202997	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	2	0		1				14.82	14.82	3	0.020916	5723	DP1141_2	76.588	54.095			38315000	937	456	887	1620	2310	2310		0	9606
LKGDDLQAIK	Unmodified	1099.6237	0.62372375	83	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		15.46	15.46	2	0.00011203	7585	DP1141_4	134.23	35.092			0	938	83	888	1621	2311	2311		1	9606
LKGDDLQAIKK	Unmodified	1227.7187	0.71868677	83	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	2	5	0					1	14.322	14.322	3	0.029373	4997	DP1141_5	80.916	30.722			7459400	939	83	889	1622	2312	2312		0	9606
LKGEATVSFDDPPSAK	Unmodified	1660.8308	0.83081599	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3	0			1			16.413	16.413	3	2.4391E-11	8052	DP1141_3	86.455	58.812			285000000	940	161	890	1623	2313	2313		0	9606
LKGQDPGAPQLQSESKPPK	Unmodified	2004.064	0.064003825	343	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	2	3	0			1			14.507	14.507	4	9.9831E-07	4976	DP1141_3	112.01	86.066			20266000	941	343	891	1624	2314	2314		0	9606
LKVPPAINQFTQALDR	Unmodified	1810.0101	0.010117761	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		20.696	20.696	3	3.6569E-22	15711	DP1141_4	176.19	87.059			242550000	942	239	892	1625	2315;2316	2316		2	9606
LKYENEVALR	Unmodified	1233.6717	0.67173657	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.86	1.55	2	1	2		2	16.331	16.331	2;3	2.676E-39	8051	DP1141_1	175.91	103.12		+	860290000	943	12	893	1626;1627;1628;1629;1630;1631;1632	2317;2318;2319;2320;2321;2322;2323;2324;2325	2319		5	9606
LLASTLVHSVK	Unmodified	1166.7023	0.70230842	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		1				17.296	17.296	2	0.0085921	9854	DP1141_2	109.66	44.198			58938000	944	456	894	1633	2326	2326		0	9606
LLDNEDGENPQR	Unmodified	1398.6375	0.63753591	385	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	1	0	1					17.616	17.616	2	0.016464	10248	DP1141_1	101.38	59.032			6726300	945	385	895	1634	2327	2327		1	9606
LLDSLEPPGEPGPSTNIPENDTVDGREEK	Unmodified	3104.4786	0.47858224	382	Q92734	TFG	Protein TFG	yes	yes	0	0	1	3	0			1			18.904	18.904	3	1.9541E-20	12125	DP1141_3	119.2	100.65			105580000	946	382	896	1635	2328;2329	2328		2	9606
LLEMTSR	Unmodified	848.44259	0.44258826	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			16.412	16.412	2	1.3209E-42	8312	DP1141_2	187.14	80.726			532170000	947	316	897	1636;1637	2330;2331	2330		2	9606
LLEPVLLLGK	Unmodified	1093.7111	0.71108219	230	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	21.699	21.699	2	3.223E-10	16821	DP1141_5	160.63	74.158			91321000	948	230	898	1638	2332	2332		1	9606
LLEQYKEESKK	Unmodified	1393.7453	0.74529545	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	1	0	1					14.13	14.13	3	5.3374E-08	4429	DP1141_1	141.91	68.07			4157100	949	272	899	1639	2333	2333		0	9606
LLETESFQMNR	Unmodified	1366.6551	0.65510023	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.558	18.558	2	2.1748E-34	11601	DP1141_1	178.94	137.83			368120000	950	302	900	1640	2334;2335	2334		2	9606
LLFPPKDDHTLK	Unmodified	1422.7871	0.78710068	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	1	0	1					17.759	17.759	3	0.030536	10418	DP1141_1	73.9	11.562			32908000	951	100	901	1641	2336	2336		0	9606
LLGASELPIVTPALR	Unmodified	1548.9239	0.92392852	205	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			21.406	21.406	2	0.011079	15895	DP1141_3	94.363	60.985			21035000	952	205	902	1642	2337;2338	2337		2	9606
LLGGVTIAQGGVLPNIQAVLLPK	Unmodified	2270.3726	0.37258843	110	P16104;Q8IUE6;Q96QV6	H2AFX;HIST2H2AB;HIST1H2AA	Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-A	yes	no	0	0	0	5	0					2	23.811	23.811	2;3	3.4811E-18	19938	DP1141_5	139.38	125.07			139040000	953	110	903	1643;1644	2339;2340;2341	2341		3	9606
LLGQFTLIGIPPAPR	Unmodified	1591.945	0.94499831	168	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		22.419	22.419	2	7.770599999999999E-50	17392	DP1141_3	180.19	145.3			53312000	954	168	904	1645;1646;1647	2342;2343;2344;2345	2342		3	9606
LLHYLGHVMVNGPTTPIPVK	Oxidation (M)	2201.2031	0.20308026	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1.5	0.5	2	2				18.454	18.454	3;4	6.0768E-09	11678	DP1141_2	108.63	85.981			431850000	955	101	905	1648;1649;1650;1651	2346;2347;2348;2349;2350;2351;2352;2353;2354;2355;2356;2357	2354	122	12	9606
LLHYLGHVMVNGPTTPIPVK	Unmodified	2185.2082	0.20816564	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.471	1	2				19.113	19.113	3;4	8.6956E-09	12706	DP1141_1	111.11	84.082			125240000	956	101	905	1652;1653;1654	2358;2359;2360;2361	2358		2	9606
LLLDHFANR	Unmodified	1097.5982	0.5981777	474	Q9UM47	NOTCH3	Neurogenic locus notch homolog protein 3;Notch 3 extracellular truncation;Notch 3 intracellular domain	yes	yes	0	0	0	1	0	1					15.257	15.257	2	0.015368	6260	DP1141_1	110.61	0			17494000	957	474	906	1655	2362;2363	2363		2	9606
LLLDTFEYQGLVK	Unmodified	1537.8392	0.83919583	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				1		22.097	22.097	2	7.842299999999999E-87	17862	DP1141_4	205.83	119.69			444570000	958	357	907	1656	2364	2364		1	9606
LLLEDLVK	Unmodified	941.57973	0.57973367	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.036	21.036	2	0.013151	15515	DP1141_1	124.59	19.394			880390000	959	302	908	1657	2365	2365		1	9606
LLLPGELAK	Unmodified	952.59572	0.59571809	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q8N257;Q96A08;A0A2R8Y619;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	0	4.8	0.4				1	4	26.246	26.246	2	0.0058619	12906	DP1141_5	117.4	16.657			23974000000	960	47;133;216	909	1658;1659;1660;1661;1662	2366;2367;2368;2369;2370;2371;2372;2373	2369		8	9606
LLNILMQLR	Oxidation (M)	1128.6689	0.6688998	44	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	1	0	2	0		1				21.301	21.301	2	0.024048	15807	DP1141_2	104.21	74.024			12288000	961	44	910	1663	2374	2374	33	0	9606
LLQDFFNGK	Unmodified	1080.5604	0.56039521	98;114	P17066;P11142;P54652	HSPA6;HSPA8;HSPA2	Heat shock 70 kDa protein 6;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3	0			1			20.304	20.304	2	1.8288E-06	14074	DP1141_3	155.51	70.245			85824000	962	114;98	911	1664	2375	2375		1	9606
LLQEDSSPLLR	Unmodified	1269.6929	0.69286595	468	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	0	3	0			1			18.533	18.533	2	0.011709	11401	DP1141_3	111.06	46.22			0	963	468	912	1665	2376	2376		1	9606
LLQLLGR	Unmodified	811.52797	0.52797287	264	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	5	0					1	19.223	19.223	2	0.00018409	13091	DP1141_5	138.38	40.353			27643000	964	264	913	1666	2377	2377		1	9606
LLSMLDDVPK	Oxidation (M)	1145.6002	0.60021112	495				yes	yes	0	1	0	3	0			1			18.204	18.204	2	0.037228	10897	DP1141_3	87.181	44.894	+		247300000	965	495	914	1667	2378	2378	393	1	9606
LLSNDEVTIK	Unmodified	1130.6183	0.61830402	382	Q92734	TFG	Protein TFG	yes	yes	0	0	0	3	0			1			17.204	17.204	2	4.0055E-12	9225	DP1141_3	150.35	68.11			435590000	966	382	915	1668	2379	2379		0	9606
LLSSPASWVR	Unmodified	1114.6135	0.61349341	496				yes	yes	0	0	0	4	0				1		17.295	17.295	2	0.010417	10475	DP1141_4	135.84	59.068	+		75391000	967	496	916	1669	2380	2380		1	9606
LLTQGFTNWNK	Unmodified	1320.6826	0.68263561	44	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	2	0		1				19.525	19.525	2	0.0027519	13233	DP1141_2	125.71	77.753			0	968	44	917	1670	2381	2381		1	9606
LLVPTQFVGAIIGK	Unmodified	1454.8861	0.88608645	25	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			23.064	23.064	2	0.0012602	18172	DP1141_3	111.06	0			17721000	969	25	918	1671	2382;2383	2382		2	9606
LMMILAMNEK	2 Oxidation (M)	1224.5916	0.59163704	212	P55061	TMBIM6	Bax inhibitor 1	yes	yes	0	2	0	3	0			1			22.222	22.222	2	0.03395	17019	DP1141_3	51.193	10.841			3074500	970	212	919	1672	2384	2384	189;190	0	9606
LNDLEDALQQAK	Unmodified	1356.6885	0.68850885	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				19.168	19.168	2	0	12680	DP1141_2	367.65	270.02		+	174990000	971	65	920	1673;1674	2385;2386	2386		2	9606
LNIDSIIQR	Unmodified	1070.6084	0.60840804	164	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	5	0					1	19.81	19.81	2	0.023913	13843	DP1141_5	88.819	25.4			7993800	972	164	921	1675	2387	2387		1	9606
LNIPVSQVNPR	Unmodified	1235.6986	0.69862003	70;104	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	1.5	0.5	1	1				17.665	17.665	2	0.0023163	10188	DP1141_1	126.07	79.176			0	973	70;104	922	1676;1677	2388;2389	2388		2	9606
LNISYTR	Unmodified	865.46577	0.46576654	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	1	0	1					16.595	16.595	2	0.013293	8423	DP1141_1	110.63	43.598			61806000	974	399	923	1678	2390	2390		1	9606
LNLDSIIGR	Unmodified	999.57129	0.57129425	225	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		20.43	20.43	2	0.00041825	15401	DP1141_4	149.4	63.314			0	975	225	924	1679	2391	2391		1	9606
LPAAGVGDMVMATVK	2 Oxidation (M)	1490.7473	0.74728606	243	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					1	16.956	16.956	2	0.0089315	9459	DP1141_5	91.123	68.111			178880000	976	243	925	1680	2392	2392	202;203	1	9606
LPCIYLVDSGGAYLPR	Unmodified	1792.9182	0.91819121	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.6	1.02	1	1	2	1		21.778	21.778	2;3	1.6834E-207	16368	DP1141_3	240	211.83			192350000	977	436	926	1681;1682;1683;1684;1685	2393;2394;2395;2396;2397;2398;2399;2400;2401	2398		9	9606
LPELLLK	Unmodified	824.53714	0.53714057	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.618	19.618	2	3.8162E-17	13198	DP1141_1	170.31	36.195			614140000	978	302	927	1686;1687	2402;2403;2404;2405	2402		4	9606
LPETVHTAVR	Unmodified	1121.6193	0.61930707	491	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	2	0		1				14.651	14.651	2	0.0029208	5537	DP1141_2	144.12	79.318			0	979	491	928	1688	2406	2406		1	9606
LPEVQQATK	Unmodified	1012.5553	0.55530983	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.932	14.932	2	4.2544E-15	5834	DP1141_2	164.72	99.052			209020000	980	307	929	1689;1690;1691;1692	2407;2408;2409;2410;2411	2409		5	9606
LPGGNEIGMVAWK	Oxidation (M)	1386.6966	0.69657112	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.236	19.236	2	5.8193E-16	12648	DP1141_1	157.68	127.51			616310000	981	302	930	1693	2412;2413	2412	251	2	9606
LPGGNEIGMVAWK	Unmodified	1370.7017	0.70165649	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.136	20.136	2	6.8112E-08	14236	DP1141_1	147.28	81.815			94581000	982	302	930	1694	2414	2414		1	9606
LPLQDVYK	Unmodified	974.54368	0.54368251	256	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2	1	1		1			17.931	17.931	2	0.020904	10698	DP1141_1	106.36	26.644			229850000	983	256	931	1695;1696	2415;2416	2415		2	9606
LPNFGFVVFDDSEPVQR	Unmodified	1964.9632	0.96322715	475	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	3	0			1			22.815	22.815	2	5.4078E-08	18217	DP1141_3	139.74	125.39			85554000	984	475	932	1697	2417	2417		1	9606
LPPQDFLDR	Unmodified	1099.5662	0.56620887	286	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			19.05	19.05	2	0.013026	11733	DP1141_3	107.9	31.121			11667000	985	286	933	1698	2418;2419	2418		2	9606
LPPVLANLMGSMGAGK	2 Oxidation (M)	1586.816	0.81603433	396	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	2	0	2	0		1				19.511	19.511	2	0.029148	13374	DP1141_2	63.727	30.502			30348000	986	396	934	1699	2420	2420	330;331	1	9606
LPRPPPPEMPESLK	Oxidation (M)	1602.844	0.84396364	270	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	1	1	0	1					16.226	16.226	3	0.031883	7804	DP1141_1	75.764	42.56			36750000	987	270	935	1700	2421	2421	226	1	9606
LQDEIQNMKEEMAR	2 Oxidation (M)	1765.7975	0.79748373	85	P08670	VIM	Vimentin	yes	yes	0	2	1	3	0			1			14.351	14.351	3	0.0034053	4728	DP1141_3	76.588	50.153			11364000	988	85	936	1701	2422	2422	78;79	1	9606
LQDVSGQLNSTK	Unmodified	1288.6623	0.6622941	136	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	2	0		1				15.697	15.697	2	5.7501E-13	6968	DP1141_2	162.36	92.764			19992000	989	136	937	1702	2423	2423		1	9606
LQEVFGHAIK	Unmodified	1140.6291	0.62914348	209	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			17.004	17.004	2	0.0050838	8950	DP1141_3	140.5	39.759			14820000	990	209	938	1703	2424	2424		1	9606
LQIEESSKPVR	Unmodified	1284.7038	0.70376498	106	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		14.824	14.824	3	0.0004071	6613	DP1141_4	142.83	33.537			44137000	991	106	939	1704	2425	2425		1	9606
LQLLEDDKENR	Unmodified	1371.6994	0.69940789	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		4				16.452	16.452	2;3	3.7073E-94	8385	DP1141_2	199.67	146.88			0	992	89	940	1705;1706;1707;1708	2426;2427;2428;2429	2427		4	9606
LQMEQQQQLQQR	Oxidation (M)	1572.7678	0.76783858	447	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	0	5	0					1	14.322	14.322	2	3.4918E-38	5079	DP1141_5	183.72	132.94			16141000	993	447	941	1709	2430;2431	2430	369	2	9606
LQQQQRPEDAEDGAEGGGK	Unmodified	2011.9195	0.91952443	291	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	1	2	0		1				13.44	13.44	3	0.00031929	3780	DP1141_2	93.371	67.931			2517300	994	291	942	1710	2432;2433	2433		2	9606
LQSQLLSLEK	Unmodified	1157.6656	0.66558856	198	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	5	0					1	18.255	18.255	2	0.010703	11484	DP1141_5	104.05	0			0	995	198	943	1711	2434	2434		1	9606
LQSSQEPEAPPPR	Unmodified	1434.7103	0.71030693	477	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	3.5	0.5			1	1		14.447	14.447	2	0.014341	5198	DP1141_3	96.015	68.273			12863000	996	477	944	1712;1713	2435;2436	2435		2	9606
LQTPNTFPK	Unmodified	1044.5604	0.56039521	322	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2	0		1				16.618	16.618	2	0.019072	8616	DP1141_2	104.06	39.85			78405000	997	322	945	1714	2437	2437		1	9606
LQVEHPCTEMVADVNLPAAQLQIAMGIPLYR	2 Oxidation (M)	3508.7517	0.75166651	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					21.537	21.537	3	0.006694	16347	DP1141_1	40.454	21.505			18028000	998	302	946	1715	2438	2438	252;253	1	9606
LRAESDFVKFDTPFLPK	Unmodified	2009.0622	0.062212911	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2	0		1				20.2	20.2	4	0.032651	14185	DP1141_2	43.37	7.7127			19077000	999	316	947	1716	2439	2439		1	9606
LRAPTSTEANHIR	Unmodified	1464.7797	0.77972389	261	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	1	3	1		1		1		14.152	14.152	3	0.00015437	5531	DP1141_4	88.163	65.612			14096000	1000	261	948	1717;1718	2440;2441	2441		1	9606
LSDGGLLLSYDGSSYTTYMK	Unmodified	2170.014	0.014001669	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.637	21.637	2	0.028462	16484	DP1141_1	80.746	39.063			14441000	1001	302	949	1719	2442	2442		1	9606
LSIVPVRR	Unmodified	938.60253	0.6025348	109	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	4	0				1		16.063	16.063	2	0.019941	8598	DP1141_4	111.82	61.689			45324000	1002	109	950	1720	2443	2443		0	9606
LSLAAQELVFPTVSGLPAR	Unmodified	1968.1044	0.10441208	24	M0QZD8			yes	yes	0	0	0	5	0					1	22.705	22.705	2	0.0073838	18367	DP1141_5	87.001	28.868			15594000	1003	24	951	1721	2444;2445	2445		2	9606
LSLTQSDISHIGSMR	Oxidation (M)	1659.825	0.82501911	459	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	1	0	4	0				1		17.894	17.894	3	0.00090482	11422	DP1141_4	108.23	69.227			14231000	1004	459	952	1722	2446	2446	374	1	9606
LSQYQEPLHLPGVR	Unmodified	1635.8733	0.87328993	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			18.687	18.687	3	1.5664E-08	11651	DP1141_3	171.26	142.48			257250000	1005	72	953	1723;1724;1725	2447;2448;2449;2450;2451	2450		5	9606
LSSEMNTSTVNSAR	Oxidation (M)	1511.6886	0.68858521	124	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	3	0			1			13.845	13.845	2	0.012014	4154	DP1141_3	85.924	48.207			1872500	1006	124	954	1726	2452	2452	136	1	9606
LSSPATLNSR	Unmodified	1044.5564	0.55637247	4	CON__P00761			yes	yes	0	0	0	3	1.41	1	1	1	1	1	15.359	15.359	2	8.164599999999999E-46	6555	DP1141_2	190.26	126.05		+	1439400000	1007	4	955	1727;1728;1729;1730;1731	2453;2454;2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465	2458		13	
LTAQFVAR	Unmodified	904.51305	0.51305109	331	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				16.543	16.543	2	0.03307	8518	DP1141_2	138.07	57.697			0	1008	331	956	1732	2466	2466		1	9606
LTDCVVMRDPASK	Oxidation (M)	1506.717	0.71704856	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	4	0				2		14.744	14.744	2;3	2.6887E-11	6484	DP1141_4	155.47	111.7			195480000	1009	128	957	1733;1734	2467;2468	2468	138	2	9606
LTDCVVMRDPASK	Unmodified	1490.7221	0.72213394	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				1		16.107	16.107	3	0.018046	8638	DP1141_4	90.434	60.629			22313000	1010	128	957	1735	2469	2469		0	9606
LTDCVVMRDPASKR	Oxidation (M)	1662.8182	0.81815959	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	2	4	0				1		14.087	14.087	4	0.019676	5461	DP1141_4	60.364	35.805			19206000	1011	128	958	1736	2470	2470	138	0	9606
LTFLVAQK	Unmodified	918.55385	0.55385327	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.658	18.658	2	0.012905	11962	DP1141_1	128.86	52.014			1516399999.9999998	1012	302	959	1737	2471	2471		1	9606
LTGDLIVWSDEMNPPQVIR	Oxidation (M)	2198.1042	0.10415408	344	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	1	0	3	0			1			20.605	20.605	3	0.034288	14199	DP1141_3	53.395	20.024			8150500	1013	344	960	1738	2472	2472	301	1	9606
LTLFVNGQPR	Unmodified	1143.64	0.64004252	382	Q92734	TFG	Protein TFG	yes	yes	0	0	0	3	0			1			18.804	18.804	2	0.033287	12007	DP1141_3	93.429	32.518			39419000	1014	382	961	1739	2473	2473		1	9606
LTLFVNGQPRPLESSQVK	Unmodified	2012.1055	0.10547471	382	Q92734	TFG	Protein TFG	yes	yes	0	0	1	3	0			1			18.804	18.804	3	0.015806	11899	DP1141_3	63.462	36.191			33886000	1015	382	962	1740	2474	2474		1	9606
LTLIDPETLLPR	Unmodified	1379.8024	0.8024164	358	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		2				22.577	22.577	2	1.7463E-65	17737	DP1141_2	208.11	156.92			0	1016	358	963	1741;1742	2475;2476	2476		2	9606
LTMLDIASNR	Unmodified	1132.591	0.59104341	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		19.496	19.496	2	8.164599999999999E-46	13989	DP1141_4	190.26	79.226			129170000	1017	330	964	1743	2477	2477		1	9606
LTPEEEEILNK	Unmodified	1313.6715	0.6714618	228	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	1	0	1					18.059	18.059	2	0.015811	10792	DP1141_1	113.71	71.516			32640000	1018	228	965	1744	2478	2478		0	9606
LTPEELER	Unmodified	985.50803	0.50802529	58	O95399	UTS2	Urotensin-2	yes	yes	0	0	0	3	0			1			16.212	16.212	2	0.0056892	7677	DP1141_3	113.41	0			67224000	1019	58	966	1745	2479	2479		1	9606
LTQTSGETTHTDKVPGGEDK	Unmodified	2099.9971	0.99710605	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.33	0.471		2	1			13.372	13.372	3;4	9.5305E-17	3496	DP1141_3	207.16	173.72			41910000	1020	182	967	1746;1747;1748	2480;2481;2482;2483;2484;2485	2484		6	9606
LTQTSGQSTHTHKEPASGDEGIK	Unmodified	2408.1568	0.15679459	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				12.618	12.618	4	0.0073429	2905	DP1141_2	71.148	52.992			27267000	1021	182	968	1749	2486	2486		1	9606
LTRPAASPAVGEK	Unmodified	1295.7197	0.7197494	366	Q8N2M8	CLASRP	CLK4-associating serine/arginine rich protein	yes	yes	0	0	1	2	0		1				14.073	14.073	3	0.013569	4718	DP1141_2	79.744	48.266			3968700	1022	366	969	1750	2487	2487		1	9606
LTTPTYGDLNHLVSATMSGVTTCLR	Oxidation (M)	2723.3259	0.32585053	81;258;312	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	4	0.816			1	1	1	21.037	21.037	3	0.00041094	16398	DP1141_4	86.825	74.617			94472000	1023	81;258;312	970	1751;1752;1753	2488;2489;2490;2491;2492;2493	2491	72	6	9606
LTWHAYPEDAENKEK	Unmodified	1829.8584	0.85842773	181	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	1	5	0					1	16.211	16.211	3	0.0034415	8191	DP1141_5	79.885	60.723			90608000	1024	181	971	1754	2494	2494		1	9606
LTWHSCPEDEAQ	Unmodified	1471.6038	0.60379294	305	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	17.025	17.025	2	0.00074118	9408	DP1141_5	137.14	109.81			394640000	1025	305	972	1755	2495;2496	2495		2	9606
LVAGEMGQNEPDQGGQR	Oxidation (M)	1800.8061	0.80607458	405	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	1	0	5	0					1	14.322	14.322	2	0.00017534	5091	DP1141_5	122.39	99.672			4279400	1026	405	973	1756	2497	2497	344	1	9606
LVAGSTDQLLSAFVPPEEPPLQPAR	Unmodified	2631.3908	0.39081727	314	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	1.5	0.5	1	1				22.762	22.762	3	0.0057849	17855	DP1141_2	57.981	33.337			12317000	1027	314	974	1757;1758	2498;2499	2499		2	9606
LVDQSGPPHEPK	Unmodified	1302.6568	0.65681479	215	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1.67	0.471	1	2				13.799	13.799	2;3	0.00041077	4218	DP1141_2	132.03	84.726			27698000	1028	215	975	1759;1760;1761	2500;2501;2502;2503;2504;2505	2501		5	9606
LVLADLLEPVK	Unmodified	1208.738	0.73802523	417	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	4	0				1		22.493	22.493	2	0.033043	18460	DP1141_4	84.213	73.455			5196600	1029	417	976	1762	2506	2506		1	9606
LVLDAFALPLTNLFK	Unmodified	1673.9756	0.97562974	211	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				25.617	25.617	2	0.0108	22043	DP1141_2	74.76	51.748			1267100	1030	211	977	1763	2507	2507		1	9606
LVLEVAQHLGESTVR	Unmodified	1649.9101	0.91006937	78	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			19.105	19.105	3	4.2548E-07	12244	DP1141_3	124.42	94.867			7789200	1031	78	978	1764	2508	2508		0	9606
LVNELTEFAK	Unmodified	1162.6234	0.6233894	9	CON__P02769			yes	yes	0	0	0	5	0					1	19.211	19.211	2	2.5233E-10	13056	DP1141_5	161.27	114.81		+	154400000	1032	9	979	1765	2509	2509		1	9606
LVNHFVEEFK	Unmodified	1260.6503	0.65027285	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	2.33	0.943	1		2			18.104	18.104	2;3	1.2666E-05	10747	DP1141_3	151.22	92.401			290410000	1033	93	980	1766;1767;1768	2510;2511;2512;2513	2513		4	9606
LVNHFVEEFKR	Unmodified	1416.7514	0.75138388	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	1	3.33	0.471			2	1		17.16	17.16	2;3	8.1514E-111	9283	DP1141_3	213.8	153.87			1000499999.9999999	1034	93	981	1769;1770;1771	2514;2515;2516;2517;2518;2519	2517		5	9606
LVPDLLAIVQR	Unmodified	1235.7602	0.76015765	428	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					22.41	22.41	2	0.036845	17515	DP1141_1	83.005	43.004			3808200	1035	428	982	1772	2520	2520		1	9606
LVPELDTIVPLESTK	Unmodified	1652.9237	0.92365374	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		21.308	21.308	2	7.8419E-78	15769	DP1141_3	193.22	120.97			134160000	1036	73	983	1773;1774	2521;2522;2523	2521		3	9606
LVPGGGATEIELAK	Unmodified	1353.7504	0.75038083	200	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			18.104	18.104	2	0.014868	10700	DP1141_3	79.23	49.679			19287000	1037	200	984	1775	2524	2524		1	9606
LVPTGLDFGQEGFTR	Unmodified	1635.8257	0.82567103	183	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				20.716	20.716	2	0.0019832	15084	DP1141_2	124.39	84.448			22586000	1038	183	985	1776	2525;2526;2527	2526		3	9606
LVQSPNSYFMDVK	Oxidation (M)	1542.7388	0.73882986	179	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	yes	no	0	1	0	5	0					1	18.699	18.699	2	0.0029986	12298	DP1141_5	126.19	95.63			50983000	1039	179	986	1777	2528	2528	165	1	9606
LVVWAADR	Unmodified	928.51305	0.51305109	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	2	1				1	18.398	18.398	2	0.010431	11678	DP1141_5	130.04	77.403			170360000	1040	399	987	1778;1779	2529;2530	2530		2	9606
LYGSAGPPPTGEEDTAEKDEL	Unmodified	2174.9855	0.98553831	97	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			18.13	18.13	2	2.1259E-07	10926	DP1141_3	87.66	73.795			15574000	1041	97	988	1780	2531	2531		1	9606
LYKDDQLLDDGK	Unmodified	1421.7038	0.70382456	328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	1	5	0					1	16.588	16.588	3	0.011474	8809	DP1141_5	86.114	49.668			34133000	1042	328	989	1781	2532	2532		1	9606
MAAASGYTDLR	Acetyl (Protein N-term);Oxidation (M)	1212.5445	0.54448715	349	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	yes	yes	1	1	0	1	0	1					14.999	14.999	2	0.031631	5338	DP1141_1	50.04	13.645			8955200	1043	349	990	1782	2533	2533	307	0	9606
MAACIAAGHWAAMGLGR	Acetyl (Protein N-term)	1784.8273	0.82728449	192	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	1	0	0	5	0					1	23.845	23.845	2	0.023676	19853	DP1141_5	49.35	13.698			65092000	1044	192	991	1783	2534	2534		1	9606
MAACIAAGHWAAMGLGR	Acetyl (Protein N-term);Oxidation (M)	1800.8222	0.82219911	192	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	1	1	0	5	0					1	31.283	31.283	2	0.030876	29751	DP1141_5	40.727	10.96			701790	1045	192	991	1784	2535	2535	177	1	9606
MAALEVYVR	Oxidation (M)	1066.5481	0.54811597	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.859	17.859	2	0.0067731	10631	DP1141_1	112.17	48.692			492940000	1046	302	992	1785	2536;2537	2536	254	2	9606
MAAVAAVAARR	Acetyl (Protein N-term);Oxidation (M)	1143.6183	0.61826122	319	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	1	1	1	4	0				1		15.334	15.334	2	0.034666	7381	DP1141_4	54.549	10.102			0	1047	319	993	1786	2538	2538	285	1	9606
MADALDNYVIR	Oxidation (M)	1295.618	0.61798644	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			18.904	18.904	2	8.1499E-20	12026	DP1141_3	159.37	89.945			13227000	1048	72	994	1787	2539	2539	49	0	9606
MADEAVCVGPAPTSK	Oxidation (M)	1547.696	0.69597877	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.75	1.48	1	1	1		1	15.691	15.691	2	0	6973	DP1141_1	282.05	233.96			144050000	1049	72	995	1788;1789;1790;1791	2540;2541;2542;2543	2540	50	3	9606
MAIMVQSPMFDGK	3 Oxidation (M)	1501.6615	0.66150752	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	3	0	2.5	0.5		1	1			17.601	17.601	2	0.0020893	9925	DP1141_3	93.096	67.71			77560000	1050	89	996	1792;1793	2544;2545;2546	2546	93;94;95	3	9606
MAIMVQSPMFDGK	2 Oxidation (M)	1485.6666	0.6665929	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	0	2	0		2				18.343	18.343	2	3.7944E-07	11150	DP1141_2	126.71	94.865			0	1051	89	996	1794;1795	2547;2548	2547	93;94;95	2	9606
MALDIEIATYR	Oxidation (M)	1310.654	0.6540376	85	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	1	0	3	0			1			19.704	19.704	2	0.031674	13166	DP1141_3	96.89	47.354			18742000	1052	85	997	1796	2549	2549	80	1	9606
MAPVPLDDSNRPASLTK	Oxidation (M)	1826.9196	0.91964777	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	1	1	1.67	0.471	1	2				16.339	16.339	2;3	0.00024267	8124	DP1141_2	124.38	75.864			169230000	1053	456	998	1797;1798;1799	2550;2551;2552;2553	2551	372	3	9606
MAVTFIGNSTAIQELFK	Oxidation (M)	1884.9655	0.96553533	81	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	3	0			2			22.754	22.754	2;3	0	17758	DP1141_3	260.81	210.62			201570000	1054	81	999	1800;1801	2554;2555;2556;2557	2554	73	3	9606
MAVTFIGNSTAIQELFK	Unmodified	1868.9706	0.97062071	81	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		23.32	23.32	2	3.1592E-81	19715	DP1141_4	208.27	169.12			9629600	1055	81	999	1802;1803	2558;2559;2560	2560		3	9606
MAVTFIGNSTAIQELFKR	Oxidation (M)	2041.0666	0.066646362	81	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	1	4	0				1		21.597	21.597	3	8.2639E-11	17094	DP1141_4	124.2	84.678			9401300	1056	81	1000	1804	2561	2561	73	0	9606
MDEPSPLAQPLELNQHSR	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	1	0	2					19.436	19.436	2;3	0	13177	DP1141_1	261.02	219.34			258880000	1057	302	1001	1805;1806	2562;2563;2564	2563	255	3	9606
MDEPSPLAQPLELNQHSR	Acetyl (Protein N-term)	2103.0055	0.0055026685	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	1	0	1					20.436	20.436	2	6.3893E-73	14555	DP1141_1	180.3	114.49			45769000	1058	302	1001	1807	2565	2565		1	9606
MDVFLMIR	Acetyl (Protein N-term);2 Oxidation (M)	1097.5249	0.52493768	328	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	1	2	0	5	0					1	22.32	22.32	2	0.0023096	17756	DP1141_5	114.72	85.572			29030000	1059	328	1002	1808	2566	2566	289;290	1	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);4 Oxidation (M)	3012.232	0.23195142	80	P06748	NPM1	Nucleophosmin	yes	yes	1	4	1	4.5	0.5				1	1	21.465	21.465	3	0.001352	16492	DP1141_5	85.932	64.368			283940000	1060	80	1003	1809;1810	2567;2568;2569	2569	60;61;62;63	3	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);3 Oxidation (M)	2996.237	0.2370368	80	P06748	NPM1	Nucleophosmin	yes	yes	1	3	1	4.67	0.471				1	2	21.945	21.945	2;3	6.217E-13	17575	DP1141_4	120.9	108.59			133500000	1061	80	1003	1811;1812;1813	2570;2571;2572;2573	2570	60;61;62;63	4	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);2 Oxidation (M)	2980.2421	0.24212218	80	P06748	NPM1	Nucleophosmin	yes	yes	1	2	1	4	0				1		22.556	22.556	2	2.5692E-13	18471	DP1141_4	108.18	90.226			17934000	1062	80	1003	1814	2574;2575	2574	60;61;62;63	2	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);Oxidation (M)	2964.2472	0.24720756	80	P06748	NPM1	Nucleophosmin	yes	yes	1	1	1	4	0				2		23.135	23.135	2;3	4.4126E-09	19425	DP1141_4	99.407	77.565			16982000	1063	80	1003	1815;1816	2576;2577;2578	2576	60;61;62;63	3	9606
MEEPQSDPSVEPPLSQETFSDLWK	Acetyl (Protein N-term);Oxidation (M)	2833.264	0.26402136	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	1	1	0	3	0			2			23.985	23.985	2;3	9.181E-14	19627	DP1141_3	125.04	107.55			12900000	1064	67	1004	1817;1818	2579;2580;2581	2579	44	3	9606
MEESVNQMQPLNEK	Acetyl (Protein N-term);2 Oxidation (M)	1749.755	0.75495021	94	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	1	2	0	4	0				1		18.039	18.039	2	0.032503	11749	DP1141_4	54.784	22.775			0	1065	94	1005	1819	2582	2582	104;105	1	9606
MEKPPAPPSLPAGPPGVK	Oxidation (M)	1784.9495	0.94949134	329	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	1	3	0			1			17.204	17.204	3	0.0070386	9271	DP1141_3	70.802	42.519			26112000	1066	329	1006	1820	2583	2583	291	0	9606
MELGNVTRVK	Acetyl (Protein N-term);Oxidation (M)	1203.6282	0.6281572	371	Q8NGI4	OR4D11	Olfactory receptor 4D11	yes	yes	1	1	1	2	0		1				26.811	26.811	2	0.033254	23702	DP1141_2	50.04	8.5921			1978100	1067	371	1007	1821	2584	2584	315	1	9606
MELITILEK	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	321	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	1	0	3	1		1		1		24.058	24.058	2	0.0064255	20778	DP1141_4	78.113	31.119			21745000	1068	321	1008	1822;1823	2585;2586	2586	286	2	9606
MESAGLEQLLR	Acetyl (Protein N-term);Oxidation (M)	1303.6442	0.6442012	373	Q8TEX9	IPO4	Importin-4	yes	yes	1	1	0	2	0		1				22.11	22.11	2	0.0012012	17012	DP1141_2	106.2	73.879			0	1069	373	1009	1824	2587	2587	317	1	9606
MEVKPPPGRPQPDSGR	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	203	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	3.33	1.7	1			1	1	14.493	14.493	3	0.00079373	6021	DP1141_4	83.292	64.13			259550000	1070	203	1010	1825;1826;1827	2588;2589;2590;2591	2590	180	3	9606
MFVGGLSWDTSK	Oxidation (M)	1342.6227	0.62273747	406	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	1	0	4	0				1		19.712	19.712	2	0.036771	14331	DP1141_4	144.77	100.39			0	1071	406	1011	1828	2592	2592	345	1	9606
MGGFQRGKYGTMAEGR	Acetyl (Protein N-term);2 Oxidation (M)	1818.8141	0.81413685	387	Q96F15	GIMAP5	GTPase IMAP family member 5	yes	yes	1	2	2	5	0					2	29.123	29.123	2	0.031647	24312	DP1141_5	53.237	28.383			0	1072	387	1012	1829;1830	2593;2594	2593	324;325	2	9606
MGHSAPLTNIR	Oxidation (M)	1211.6081	0.60809046	372	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	1	0	1	0	1					14.748	14.748	3	0.038329	5231	DP1141_1	72.434	54.166			3098800	1073	372	1013	1831	2595	2595	316	0	9606
MGLAGVCALRR	Acetyl (Protein N-term)	1244.6482	0.64818114	145	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	1	0	1	3	0			1			16.77	16.77	2	0.016183	8620	DP1141_3	63.486	29.483			34517000	1074	145	1014	1832	2596	2596		1	9606
MGLGTLSPR	Acetyl (Protein N-term);Oxidation (M)	988.50117	0.50116577	43	O43897	TLL1	Tolloid-like protein 1	yes	yes	1	1	0	5	0					1	33.819	33.819	2	0.032278	32867	DP1141_5	74.415	33.843			0	1075	43	1015	1833	2597	2597	32	1	9606
MGPAMGPALGAGIER	2 Oxidation (M)	1458.6959	0.69591919	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			16.957	16.957	2	0.0044859	8984	DP1141_3	84.605	53.531			43786000	1076	204	1016	1834	2598	2598	181;182	1	9606
MGPLGLDHMASSIER	2 Oxidation (M)	1644.76	0.75997601	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			16.67	16.67	3	0.0019144	8467	DP1141_3	71.933	41.106			66892000	1077	204	1017	1835	2599	2599	183;184	1	9606
MGRTWCGMWR	Acetyl (Protein N-term);2 Oxidation (M)	1413.574	0.57402992	464	Q9P2W6	C11orf21	Uncharacterized protein C11orf21	yes	yes	1	2	1	2	0		1				37.662	37.662	2	0.038197	36212	DP1141_2	46.457	20.393			0	1078	464	1018	1836	2600	2600	376;377	1	9606
MHLYLGAAK	Unmodified	1002.5321	0.53207197	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					16.825	16.825	2	0.0033512	8694	DP1141_1	138.07	102.78			492890000	1079	302;31	1019	1837	2601;2602;2603	2601		3	9606
MHLYLGAAK	Oxidation (M)	1018.527	0.52698659	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					15.257	15.257	2	0.0010247	6147	DP1141_1	133.47	80.683			31242000	1080	302;31	1019	1838	2604	2604	28	0	9606
MIAGQVLDINLAAEPK	Unmodified	1681.9073	0.90729217	83	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.796	20.796	2	0.032101	16095	DP1141_4	65.043	33.2			60736000	1081	83	1020	1839	2605	2605		1	9606
MIAGQVLDINLAAEPK	Oxidation (M)	1697.9022	0.9022068	83	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		20.201	20.201	2	1.6261E-05	15066	DP1141_4	126.34	82.386			0	1082	83	1020	1840	2606	2606	76	1	9606
MIFDVESMKK	2 Oxidation (M)	1258.5937	0.59374553	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	1	2	0.707	1	2	1			15.999	15.999	2;3	0.0039006	7575	DP1141_2	133.58	76.404			160650000	1083	89	1021	1841;1842;1843;1844	2607;2608;2609;2610;2611;2612	2610	96;97	5	9606
MIFDVESMKK	Oxidation (M)	1242.5988	0.59883091	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2	0		1				17.401	17.401	3	0.016618	9782	DP1141_2	73.887	48.265			24023000	1084	89	1021	1845	2613	2613	96;97	1	9606
MIKPFFHSLSEK	Oxidation (M)	1478.7592	0.75917137	96	P10599	TXN	Thioredoxin	yes	yes	0	1	1	5	0					1	17.025	17.025	3	0.0095559	9514	DP1141_5	98.182	55.758			12110000	1085	96	1022	1846	2614	2614	106	0	9606
MISRMEK	Acetyl (Protein N-term);Oxidation (M)	951.45177	0.45177274	303	Q13103	SPP2	Secreted phosphoprotein 24	yes	yes	1	1	1	2	0		1				23.136	23.136	2	0.033598	18553	DP1141_2	57.453	16.244			22842000	1086	303	1023	1847	2615	2615	270	1	9606
MKEIAEAYLGK	Oxidation (M)	1267.6482	0.64822394	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			16.266	16.266	2	0.00013841	7748	DP1141_3	128.01	89.223			0	1087	98	1024	1848	2616	2616	109	1	9606
MKETAENYLGHTAK	Oxidation (M)	1607.7614	0.76135622	168	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			14.41	14.41	3	0.029598	4842	DP1141_3	76.358	57.299			48719000	1088	168	1025	1849	2617	2617	157	1	9606
MKLPEHPEGGEPEDDEAPAK	Oxidation (M)	2190.9739	0.97392777	453	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	1	1	3	0			1			14.574	14.574	3	0.00031481	4954	DP1141_3	83.891	49.629			3422800	1089	453	1026	1850	2618	2618	371	0	9606
MKTPVQYSQQQNSPQK	Oxidation (M)	1906.9207	0.92071041	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2	0		1				13.926	13.926	3	5.3498E-06	4495	DP1141_2	140.22	102.78			12097000	1090	182	1027	1851	2619;2620	2619	167	2	9606
MKVELCSFSGYK	Oxidation (M)	1463.6789	0.67887214	266	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	1	5	0					1	17.312	17.312	2	0.015616	10010	DP1141_5	106.62	65.891			91327000	1091	266	1028	1852	2621	2621	223	1	9606
MKVQDQDLPNTPHSK	Oxidation (M)	1752.8465	0.84648283	289	Q08554	DSC1	Desmocollin-1	yes	yes	0	1	1	1	0	1					13.838	13.838	3	0.037392	4004	DP1141_1	67.846	35.112			1250400	1092	289	1029	1853	2622	2622	234	1	9606
MLIEDVDALKSWLAK	Acetyl (Protein N-term);Oxidation (M)	1788.9332	0.93317257	463	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	1	1	1	1	0	1					19.207	19.207	3	0.034095	12733	DP1141_1	41.56	10.52			6667400	1093	463	1030	1854	2623	2623	375	0	9606
MLTLTRIRTVSYEVR	Acetyl (Protein N-term);Oxidation (M)	1895.0299	0.029866926	217	P59533	TAS2R38	Taste receptor type 2 member 38	yes	yes	1	1	2	5	0					1	25.589	25.589	2	0.029227	22443	DP1141_5	60.641	37.524			0	1094	217	1031	1855	2624	2624	191	1	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	2 Oxidation (M)	2881.2146	0.21458552	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.836	20.836	3	2.7314E-16	15223	DP1141_1	133.74	124.87			205680000	1095	302	1032	1856	2625;2626	2625	256;257	2	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	Oxidation (M)	2865.2197	0.2196709	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.237	21.237	3	7.2401E-51	15730	DP1141_1	164.89	151.24			102900000	1096	302	1032	1857	2627	2627	256;257	1	9606
MNDTVTIR	Acetyl (Protein N-term);Oxidation (M)	1006.4753	0.47534495	245	P62847	RPS24	40S ribosomal protein S24	yes	yes	1	1	0	5	0					1	16.956	16.956	2	0.00080823	9319	DP1141_5	113.7	72.194			20749000	1097	245	1033	1858	2628;2629	2628	205	2	9606
MPCESSPPESADTPTSTR	Oxidation (M)	1964.8092	0.80917063	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				14.719	14.719	2	0.00027616	5851	DP1141_2	101.45	54.748			6820000	1098	182	1034	1859	2630	2630	168	1	9606
MPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQK	Oxidation (M)	3458.7544	0.75442693	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	1	0	3	0			1			20.204	20.204	3	4.9266E-10	14147	DP1141_3	64.045	50.097			33490000	1099	67	1035	1860	2631	2631	45	1	9606
MPEGPELHLASQFVNEACR	Acetyl (Protein N-term);Oxidation (M)	2242.0147	0.014687146	388	Q96FI4	NEIL1	Endonuclease 8-like 1	yes	yes	1	1	0	3	0			1			20.805	20.805	3	0.031862	14927	DP1141_3	40.602	12.95			35174000	1100	388	1036	1861	2632	2632	326	0	9606
MPGGPKPGGGPGLSTPGGHPKPPHR	Oxidation (M)	2385.2124	0.21241617	131	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	2	2	0		2				14.08	14.08	4;5	0.0052827	4798	DP1141_2	52.909	29.462			24490000	1101	131	1037	1862;1863	2633;2634	2633	140	1	9606
MPMILGYWDIR	Acetyl (Protein N-term);2 Oxidation (M)	1467.689	0.6890429	87	P09488	GSTM1	Glutathione S-transferase Mu 1	yes	yes	1	2	0	2	0		1				24.352	24.352	2	0.035268	20305	DP1141_2	53.166	12.815			0	1102	87	1038	1864	2635	2635	82;83	1	9606
MQEHSDQVPVGNIPR	Unmodified	1705.8206	0.82060243	155	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			16.313	16.313	3	0.027715	7651	DP1141_3	50.155	24.007			21155000	1103	155	1039	1865	2636	2636		1	9606
MQLPSAAGLHPTGHQSK	Oxidation (M)	1774.8785	0.87845166	324	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	1	0	4	0				1		14.853	14.853	3	0.01167	6641	DP1141_4	64.537	44.307			12937000	1104	324	1040	1866	2637	2637	287	1	9606
MSATFIGNSTAIQELFK	Oxidation (M)	1872.9291	0.92914983	258;312	P68371;Q9BVA1;Q13885	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	1	0	3.5	0.5			1	1		22.309	22.309	2	0	17157	DP1141_3	269.14	22.884			143880000	1105	258;312	1041	1867;1868	2638;2639;2640;2641	2638	216	4	9606
MSGALDVLQMK	Acetyl (Protein N-term);2 Oxidation (M)	1265.5996	0.59955919	1	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	1	2	0	2	0		1				14.796	14.796	2	0.030627	5760	DP1141_2	60.019	17.829			0	1106	1	1042	1869	2642	2642	0;1	1	9606
MSGECAPNVSVSVSTSHTTISGGGSR	Oxidation (M)	2580.1544	0.1544281	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	1	0	1					16.65	16.65	3	0.00044074	8499	DP1141_1	71.905	54.226		+	0	1107	65	1043	1870	2643	2643	42	1	9606
MSMKEVDEQMLNVQNK	3 Oxidation (M)	1970.8747	0.87474777	81;258;312	P07437;P68371;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	3	1	5	0					1	14.82	14.82	3	0.00013552	5783	DP1141_5	109.1	87.683			25568000	1108	81;258;312	1044	1871	2644;2645	2644	67;74;75	2	9606
MSVDPLSSKALKIK	Acetyl (Protein N-term);Oxidation (M)	1573.8749	0.87492941	473	Q9ULX9	MAFF	Transcription factor MafF	yes	yes	1	1	2	3	0			1			21.406	21.406	2	0.037806	15689	DP1141_3	44.639	11.262			14829000	1109	473	1045	1872	2646	2646	380	0	9606
MSVQPTVSLGGFEITPPVVLR	Oxidation (M)	2242.2031	0.20313984	80	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.38	0.484				5	3	28.76	28.76	2;3	0	18375	DP1141_5	292.16	271.1			2803100000	1110	80	1046	1873;1874;1875;1876;1877;1878;1879;1880	2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662	2658	64	16	9606
MSVQPTVSLGGFEITPPVVLR	Unmodified	2226.2082	0.20822522	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4.33	0.471				2	1	23.059	23.059	2;3	1.5769E-234	19299	DP1141_4	241.3	221.8			563400000	1111	80	1046	1881;1882;1883	2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674	2670		12	9606
MTDQEAIQDLWQWR	Oxidation (M)	1834.8308	0.83083277	80	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.33	0.471				4	2	22.48	22.48	2;3	0	18450	DP1141_4	367.32	287.34			2120399999.9999998	1112	80	1047	1884;1885;1886;1887;1888;1889	2675;2676;2677;2678;2679;2680;2681;2682;2683;2684	2675	65	10	9606
MTDQEAIQDLWQWR	Unmodified	1818.8359	0.83591814	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4.5	0.5				1	1	23.18	23.18	2	0	19515	DP1141_4	406.72	350.46			354520000	1113	80	1047	1890;1891	2685;2686;2687;2688;2689;2690	2687		6	9606
MTLDDFR	Oxidation (M)	912.40112	0.40111738	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	0.707	1	2	1			17.038	17.038	1;2	0.00016577	9416	DP1141_2	138.85	103.74		+	577290000	1114	14	1048	1892;1893;1894;1895	2691;2692;2693;2694;2695	2693	10	5	9606
MVAAVACAQVPK	Oxidation (M)	1259.6366	0.6366134	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		15.841	15.841	2	0.00032152	6996	DP1141_3	140.35	75.196			294680000	1115	436	1049	1896;1897;1898	2696;2697;2698;2699;2700;2701;2702	2698	361	7	9606
MVAAVACAQVPK	Unmodified	1243.6417	0.64169877	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			16.749	16.749	2	0.0064474	8601	DP1141_1	98.033	78.901			67995000	1116	436	1049	1899;1900	2703;2704	2703		1	9606
MVDPEKPQLGMIDR	2 Oxidation (M)	1659.796	0.79602716	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	1	2	0		1				16.256	16.256	3	0.014798	8208	DP1141_2	59.796	35.381			102240000	1117	89	1050	1901	2705	2705	89;90	1	9606
MVDPEKPQLGMIDR	Oxidation (M)	1643.8011	0.80111254	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2	0		1				16.905	16.905	3	0.021945	9163	DP1141_2	94.781	64.298			37993000	1118	89	1050	1902	2706	2706	89;90	1	9606
MVGVGGGDVEDVTPR	Acetyl (Protein N-term);Oxidation (M)	1544.7141	0.71407167	86	P09038	FGF2	Fibroblast growth factor 2	yes	yes	1	1	0	2	1	1		1			20.47	20.47	2	0.0091945	14383	DP1141_3	73.841	30.423			224820000	1119	86	1051	1903;1904	2707;2708	2708	81	1	9606
MVIITGPPEAQFK	Oxidation (M)	1445.7588	0.75883702	25;458	O00425;Q9Y6M1;Q9NZI8	IGF2BP3;IGF2BP2;IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2;Insulin-like growth factor 2 mRNA-binding protein 1	no	no	0	1	0	3	0			1			18.661	18.661	2	0.02673	11604	DP1141_3	101.66	59.326			0	1120	25;458	1052	1905	2709	2709	21	1	9606
MVIITGPPEAQFK	Unmodified	1429.7639	0.7639224	25;458	O00425;Q9Y6M1;Q9NZI8	IGF2BP3;IGF2BP2;IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2;Insulin-like growth factor 2 mRNA-binding protein 1	no	no	0	0	0	3	0			1			19.604	19.604	2	0.038179	13214	DP1141_3	95.523	66.946			7935500	1121	25;458	1052	1906	2710	2710		0	9606
MVMTVFACLMGR	2 Oxidation (M)	1446.6492	0.64916869	105	P13797	PLS3	Plastin-3	yes	yes	0	2	0	2	0		1				18.156	18.156	2	0.038209	10897	DP1141_2	43.083	11.049			9906700	1122	105	1053	1907	2711	2711	126;127	0	9606
MVNHFIAEFK	Oxidation (M)	1250.6118	0.61177885	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			17.754	17.754	2	0.032694	10169	DP1141_3	112.71	67.73			0	1123	98	1054	1908	2712	2712	110	1	9606
MVNHFIAEFK	Unmodified	1234.6169	0.61686423	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			18.397	18.397	2	2.4572E-07	11189	DP1141_3	166.34	104.66			0	1124	98	1054	1909	2713	2713		1	9606
MVPAGMGAGLER	2 Oxidation (M)	1219.5689	0.56892776	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			14.901	14.901	2	0.01752	5615	DP1141_3	82.261	44.533			0	1125	204	1055	1910	2714	2714	185;186	1	9606
MVQEAEKYKAEDEVQR	Oxidation (M)	1967.9259	0.92585536	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	1	2	2.33	0.943	1		2			14.436	14.436	3;4	9.6604E-10	4930	DP1141_1	142.1	102.94			212300000	1126	93	1056	1911;1912;1913	2715;2716;2717;2718	2715	101	4	9606
MVQEAEKYKAEDEVQR	Unmodified	1951.9309	0.93094074	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	2	3	0			2			14.996	14.996	3;4	0.0043385	5654	DP1141_3	102.5	71.93			26152000	1127	93	1056	1914;1915	2719;2720	2720		1	9606
MYVPALIFGQLLTSSNYDDDEKK	Oxidation (M)	2662.2836	0.28363459	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	1	1.5	0.5	1	1				22.944	22.944	3	1.4716E-05	18336	DP1141_1	95.227	61.025			12718000	1128	100	1057	1916;1917	2721;2722	2721	115	2	9606
MYVPALIFGQLLTSSNYDDDEKKVTGGR	Oxidation (M)	3132.5438	0.54376545	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	2	2	0		1				22.201	22.201	4	1.6121E-17	17239	DP1141_2	106.1	90.064			10394000	1129	100	1058	1918	2723	2723	115	1	9606
NAAPPPSNTEAPPGETR	Unmodified	1704.8067	0.80672651	423	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				14.368	14.368	2	0.0042717	5241	DP1141_2	82.069	59.594			3921200	1130	423	1059	1919	2724;2725	2725		2	9606
NAGNCLSPAVIVGLLK	Unmodified	1624.8971	0.89706184	40	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			22.58	22.58	2	7.7512E-06	17533	DP1141_3	179.6	145.52			13952000	1131	40	1060	1920	2726;2727	2726		2	9606
NAHSATTWSGQYVGGAEAR	Unmodified	1961.898	0.89800113	23	CON__Streptavidin			yes	yes	0	0	0	3.62	1.65	2		1	1	4	21.529	21.529	2;3	0	8456	DP1141_1	304.86	280.35		+	24329000000	1132	23	1061	1921;1922;1923;1924;1925;1926;1927;1928	2728;2729;2730;2731;2732;2733;2734;2735;2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746	2729		19	
NALESYAFNMK	Oxidation (M)	1302.5914	0.59143734	93	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	1	0	3	0			1			18.404	18.404	2	3.5198E-08	11256	DP1141_3	145.72	125.94			774540000	1133	93	1062	1929	2747	2747	102	0	9606
NAMTSAPSKDQVQLK	Oxidation (M)	1632.8141	0.81412007	2	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	1	1	1	0	1					14.348	14.348	3	0.011784	4808	DP1141_1	91.307	50.829			1860500	1134	2	1063	1930	2748	2748	2	0	9606
NDEELNKLLGK	Unmodified	1271.6721	0.67213051	91	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	yes	no	0	0	1	5	0					4	18.198	18.198	2	9.955399999999999E-234	11510	DP1141_5	256.24	159.57			3447799999.9999995	1135	91	1064	1931;1932;1933;1934	2749;2750;2751;2752	2749		4	9606
NDEELNKLLGR	Unmodified	1299.6783	0.67827852	69	Q93077;Q7L7L0;P04908	HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	yes	no	0	0	1	5	0					2	18.614	18.614	2;3	8.710999999999999E-205	12068	DP1141_5	240.38	162.23			1804099999.9999998	1136	69	1065	1935;1936	2753;2754;2755;2756;2757	2754		5	9606
NDLAVVDVR	Unmodified	999.53491	0.53490874	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.33	0.471		2	1			17.566	17.566	1;2	3.2463E-126	10215	DP1141_2	223.36	119.35			305920000	1137	123	1066	1937;1938;1939	2758;2759;2760;2761;2762	2760		5	9606
NDLSPASSGNAVYDFFIGR	Unmodified	2028.9541	0.95411902	320	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					23.166	23.166	2	6.4792E-37	18728	DP1141_1	192.14	144.54			10716000	1138	320	1067	1940	2763	2763		1	9606
NDTKEDVFVHQTAIK	Unmodified	1743.8792	0.87916317	255;113	P67809;Q9Y2T7;P16989	YBX1;YBX2;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3	no	no	0	0	1	4	0				1		15.87	15.87	3	0.0043062	8406	DP1141_4	123.72	87.201			106300000	1139	255;113	1068	1941	2764;2765;2766	2766		3	9606
NEEPSEEEIDAPKPK	Unmodified	1710.7948	0.79482442	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	1.5	0.5	1	1				15.119	15.119	3	0.00033358	6076	DP1141_1	139.58	100.07			62125000	1140	443	1069	1942;1943	2767;2768	2767		2	9606
NEGNIFPNPEATFVK	Unmodified	1675.8206	0.82058566	490	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					20.336	20.336	2	1.1319E-38	14443	DP1141_1	174.21	124.58			29620000	1141	490	1070	1944	2769	2769		1	9606
NEKEQELDTLKR	Unmodified	1501.7736	0.77363546	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	2	3	0			1			14.507	14.507	3	0.0053229	5049	DP1141_3	122.46	75.397			2214400	1142	100	1071	1945	2770	2770		0	9606
NELFLPGR	Unmodified	944.50797	0.50796571	304	Q13123	IK	Protein Red	yes	yes	0	0	0	3	0			1			18.804	18.804	2	2.9379E-18	11753	DP1141_3	160.03	52.71			16861000	1143	304	1072	1946	2771	2771		0	9606
NGIAFMGPPSQAMWALGDK	2 Oxidation (M)	2021.9339	0.93391763	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.279	20.279	2	0.0066533	14433	DP1141_1	77.562	22.778			18402000	1144	302	1073	1947	2772	2772	258;259	1	9606
NGIAFMGPPSQAMWALGDK	Oxidation (M)	2005.939	0.93900301	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.361	21.361	2	0.0050666	16037	DP1141_1	87.647	32.607			22973000	1145	302	1073	1948	2773;2774	2774	258;259	2	9606
NGIAFMGPPSQAMWALGDK	Unmodified	1989.9441	0.94408839	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.465	22.465	2	0.00053991	17610	DP1141_1	94.532	65.743			8827100	1146	302	1073	1949	2775;2776	2775		2	9606
NGIDILVGTPGR	Unmodified	1210.667	0.66698555	443;408	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	2	0		1				19.399	19.399	2	3.0856E-38	13250	DP1141_2	183.85	118.6			21449000	1147	443;408	1074	1950	2777;2778	2777		2	9606
NGPLEVAGAAVSAGHGLPAK	Unmodified	1814.9639	0.96389585	50	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				2		18.394	18.394	2;3	4.2158000000000004E-182	12159	DP1141_4	225.17	205.78			305940000	1148	50	1075	1951;1952	2779;2780;2781;2782;2783;2784;2785	2785		7	9606
NGYGFINR	Unmodified	939.45626	0.45626449	255;113	P67809;Q9Y2T7;P16989	YBX1;YBX2;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3	no	no	0	0	0	4	0				1		17.395	17.395	2	0.00055835	10736	DP1141_4	139.92	89.797			167610000	1149	255;113	1076	1953	2786	2786		1	9606
NHDHQEIAVPVANLK	Unmodified	1683.8693	0.86926718	54	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	5	0					1	16.419	16.419	3	0.00062075	8526	DP1141_5	109.1	67.008			145050000	1150	54	1077	1954	2787;2788	2787		2	9606
NHPGLLLMDTTFR	Oxidation (M)	1529.766	0.76604767	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1.33	0.471	2	1				18.672	18.672	2;3	0.0010574	11971	DP1141_1	109.15	63.381			480740000	1151	101	1078	1955;1956;1957	2789;2790;2791	2789	123	2	9606
NHPGLLLMDTTFR	Unmodified	1513.7711	0.77113304	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.471	1	2				19.945	19.945	2;3	1.4929E-05	14048	DP1141_1	112.08	57.433			218460000	1152	101	1078	1958;1959;1960	2792;2793;2794	2792		2	9606
NIDDGTSDRPYSHALVAGIDR	Unmodified	2271.088	0.087986745	222	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	5	0					1	17.698	17.698	4	0.024567	10560	DP1141_5	62.002	46.58			354150000	1153	222	1079	1961	2795	2795		1	9606
NIDDGTSDRPYSHALVAGIDRYPR	Unmodified	2687.3052	0.30519016	222	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	17.998	17.998	4	6.3305E-06	10986	DP1141_5	97.621	73.823			106410000	1154	222	1080	1962	2796;2797	2796		2	9606
NIIHGSDSVESAEK	Unmodified	1484.7107	0.71070086	108	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	5	0					1	14.854	14.854	3	0.003579	5906	DP1141_5	92.65	66.291			3319400	1155	108	1081	1963	2798	2798		1	9606
NISNTVMKVK	Unmodified	1132.6274	0.62742892	293	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	1	3	0			1			17.185	17.185	2	0.0083054	9259	DP1141_3	101.46	16.195			0	1156	293	1082	1964	2799	2799		1	9606
NITYLPAGQSVLLQLPQ	Unmodified	1854.0251	0.025099124	157	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		23.483	23.483	2	8.7026E-169	19924	DP1141_4	227.81	142.52			36479000	1157	157	1083	1965	2800;2801	2800		2	9606
NIYAFMGTPVQK	Oxidation (M)	1383.6857	0.68567208	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				17.998	17.998	2	0.019661	11079	DP1141_2	99.973	62.424			24609000	1158	182	1084	1966	2802	2802	169	1	9606
NKFPGDSVVTGR	Unmodified	1275.6571	0.65714914	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			16.284	16.284	2;3	0.010774	7376	DP1141_3	73.219	40.131			21207000	1159	73	1085	1967;1968	2803;2804	2803		2	9606
NKLDHYAIIK	Unmodified	1213.6819	0.68190733	240	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	15.802	15.802	3	0.019217	7356	DP1141_5	84.31	15.417			254990000	1160	240	1086	1969	2805;2806	2805		2	9606
NKLNDLEDALQQAKEDLAR	Unmodified	2183.1182	0.11822424	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	1.5	0.5	1	1				21.519	21.519	3	7.8856E-279	16135	DP1141_1	252.47	205.47		+	223550000	1161	65	1087	1970;1971	2807;2808;2809;2810	2807		3	9606
NKLNDLEEALQQAK	Unmodified	1612.842	0.84204938	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	5	0					1	19.705	19.705	2	0.00073409	13852	DP1141_5	172.61	117.55		+	16307000	1162	15	1088	1972	2811	2811		1	9606
NKMDAASAYVIVDLVGETK	Oxidation (M)	2039.0245	0.024506776	493				yes	yes	0	1	1	5	0					1	21.237	21.237	2	0.017766	16101	DP1141_5	71.806	25.916	+		101840000	1163	493	1089	1973	2812	2812	392	1	9606
NKNPAPPIDAVEQILPTLVR	Unmodified	2184.2267	0.22665248	205	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	1	3	0			1			22.202	22.202	3	2.5323E-08	17116	DP1141_3	125.23	107.3			11342000	1164	205	1090	1974	2813	2813		1	9606
NKPGPYSSVPPPSAPPPK	Unmodified	1815.9519	0.95193418	322	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	1	2	0		1				15.219	15.219	3	0.0077433	6734	DP1141_2	73.593	51.244			43862000	1165	322	1091	1975	2814	2814		0	9606
NKPGPYSSVPPPSAPPPKK	Unmodified	1944.0469	0.046897198	322	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	2	3	1		2		2		14.396	14.396	3;4	0.00675	5786	DP1141_4	68.123	41.977			55045000	1166	322	1092	1976;1977;1978;1979	2815;2816;2817;2818;2819	2819		4	9606
NKPQVPVPGSDISETQVER	Unmodified	2079.0596	0.059646729	386	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	1	4	0				1		16.905	16.905	3	9.8499E-06	9963	DP1141_4	124.25	97.318			78359000	1167	386	1093	1980	2820	2820		1	9606
NKYEDEINKR	Unmodified	1307.647	0.64697839	65;13	CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__H-INV:HIT000016045;CON__P05787;CON__Q8VED5;P05787;P04264;CON__P04264;CON__Q6IFZ6	KRT5;KRT6C;KRT6A;KRT8;KRT1	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 1	no	no	0	0	2	2.5	1.12	1	1	1	1		14.26	14.26	3	9.101299999999999E-66	4625	DP1141_3	185.61	137.76		+	243660000	1168	13;65	1094	1981;1982;1983;1984	2821;2822;2823;2824	2823		3	9606
NLDIERPTYTNLNR	Unmodified	1717.8747	0.87474649	257;409	P68363;P68366;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65;Q6PEY2	TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA8;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain	no	no	0	0	1	2.75	1.09	1		2	1		17.69	17.69	2;3	8.7208E-33	10112	DP1141_3	188.27	144.85			1857599999.9999998	1169	257;409	1095	1985;1986;1987;1988	2825;2826;2827;2828;2829	2828		4	9606
NLDLDSIIAEVR	Unmodified	1356.7249	0.72489436	21;18	CON__Q6NXH9;CON__P19013;P19013;CON__Q32MB2;Q86Y46	KRT4;KRT73	Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 73	no	no	0	0	0	3	0			1			19.166	19.166	2	3.7801E-12	12398	DP1141_3	194.06	113.62		+	0	1170	21;18	1096	1989	2830	2830		1	9606
NLLVTMLIDQLCGR	Oxidation (M)	1660.864	0.86404715	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				24.1	24.1	2	2.5105E-32	19936	DP1141_1	173.04	129.74			25436000	1171	302	1097	1990;1991	2831;2832;2833	2831	250	3	9606
NLPFDFTWK	Unmodified	1166.576	0.57604528	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			22.414	22.414	2	0.019072	17403	DP1141_3	104.06	66.898			9562700	1172	204	1098	1992	2834;2835;2836	2836		3	9606
NLPLPPPPPPR	Unmodified	1193.6921	0.69207809	223	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			17.804	17.804	2	0.021205	10420	DP1141_3	102.51	47.144			39280000	1173	223	1099	1993	2837;2838	2838		2	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	Oxidation (M)	2204.893	0.89299211	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4	0				1		16.553	16.553	2	0	9369	DP1141_4	260.58	214.69			76408000	1174	128	1100	1994	2839;2840	2839	139	2	9606
NMMAACDPR	Unmodified	1064.4202	0.42015503	81;258;312;308	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3	0			1			15.407	15.407	2	0.023644	6388	DP1141_3	89.752	56.912			37726000	1175	81;258;312;308	1101	1995	2841	2841		1	9606
NMQDMVEDYR	2 Oxidation (M)	1331.5122	0.51220074	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	2.5	1.12	1	1	1	1		15.353	15.353	2	0.0015342	6707	DP1141_2	125.57	106.9		+	406940000	1176	65	1102	1996;1997;1998;1999	2842;2843;2844;2845;2846;2847;2848	2844	40;41	7	9606
NMQDMVEDYR	Oxidation (M)	1315.5173	0.51728612	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	1.75	0.829	2	1	1			16.929	16.929	2	0.0081601	8448	DP1141_1	138.08	91.69		+	327420000	1177	65	1102	2000;2001;2002;2003	2849;2850;2851;2852	2849	40;41	4	9606
NMQDMVEDYRNK	2 Oxidation (M)	1573.6501	0.65009121	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	1	0	1					14.302	14.302	3	0.010623	4891	DP1141_1	75.566	53.237		+	3368400	1178	65	1103	2004	2853	2853	40;41	1	9606
NMSGSLYEMVSR	2 Oxidation (M)	1404.6014	0.6013501	290	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	2	0	2	0		1				16.681	16.681	2	0.02526	8805	DP1141_2	54.343	36.478			5626400	1179	290	1104	2005	2854	2854	235;236	0	9606
NMVPQQALVIR	Oxidation (M)	1283.702	0.70199085	70;104	P05023;P50993;Q13733;P13637	ATP1A1;ATP1A2;ATP1A4;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	1	0	1	0	1					17.46	17.46	2	0.024483	9932	DP1141_1	101.54	62.237			24910000	1180	70;104	1105	2006	2855	2855	46	1	9606
NMVQTAVVPVKK	Oxidation (M)	1328.7486	0.74860669	300	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	1	1	4	0				1		14.388	14.388	3	0.0058163	5932	DP1141_4	91.123	68.342			22846000	1181	300	1106	2007	2856	2856	239	1	9606
NNTQVLINCR	Unmodified	1230.6139	0.61390412	237	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	16.054	16.054	2	2.5898E-07	7828	DP1141_5	200.16	138.47			0	1182	237	1107	2008	2857	2857		1	9606
NPDLCDFTIDHQSCSR	Unmodified	1963.8153	0.81525906	300	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		18.164	18.164	3	0.011684	12016	DP1141_4	63.754	54.59			9849200	1183	300	1108	2009	2858	2858		1	9606
NPDTQWITKPVHK	Unmodified	1562.8205	0.82052608	221	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	1	5	0					1	15.967	15.967	3	0.00097833	7688	DP1141_5	122.55	80.452			182270000	1184	221	1109	2010	2859	2859		1	9606
NPVTIFSLATNEMWR	Oxidation (M)	1793.8771	0.87705468	282	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	1	0	5	0					1	22.476	22.476	2	6.0363E-06	17991	DP1141_5	140.45	96.154			17462000	1185	282	1110	2011	2860	2860	232	1	9606
NQVALNPQNTVFDAK	Unmodified	1657.8424	0.84238373	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	4	0.707			1	2	1	18.508	18.508	2	3.0880999999999995E-50	11957	DP1141_5	199.8	144.72			854180000	1186	93	1111	2012;2013;2014;2015	2861;2862;2863;2864;2865;2866;2867	2866		7	9606
NQVALNPQNTVFDAKR	Unmodified	1813.9435	0.94349476	93	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	1	4	1			1		1	17.495	17.495	3	2.6878E-16	10226	DP1141_5	154.72	123.33			157830000	1187	93	1112	2016;2017	2868;2869;2870	2870		2	9606
NQVAMNPTNTVFDAK	Oxidation (M)	1664.7828	0.78281994	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			17.204	17.204	2	8.0125E-207	9295	DP1141_3	236.11	194.41			120070000	1188	98	1113	2018	2871;2872	2871	111	2	9606
NREELGFRPEYSASQLK	Unmodified	2023.0123	0.012302606	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0		1				17.296	17.296	3	0.00051274	9778	DP1141_2	118.2	53.403			702380000	1189	89	1114	2019	2873	2873		1	9606
NRENCELSDHCIK	Unmodified	1673.725	0.72498749	353	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		1				14.152	14.152	3	0.012455	4776	DP1141_2	71.933	59.195			4857900	1190	353	1115	2020	2874	2874		1	9606
NRPPFGQGYTQPGPGYR	Unmodified	1890.9125	0.91252898	382	Q92734	TFG	Protein TFG	yes	yes	0	0	1	3	0			1			16.867	16.867	3	8.3724E-07	8767	DP1141_3	134.37	105.83			127320000	1191	382	1116	2021	2875;2876	2875		2	9606
NSDEADLVPAK	Unmodified	1157.5564	0.55643205	267	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	0	5	0					1	15.802	15.802	2	7.6935E-08	7481	DP1141_5	144.77	103.99			315260000	1192	267	1117	2022	2877	2877		0	9606
NSIDASEEKPVMR	Oxidation (M)	1490.7035	0.70350699	446	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	1	2	0		1				14.001	14.001	3	0.017153	4563	DP1141_2	77.644	53.968			0	1193	446	1118	2023	2878	2878	368	1	9606
NSPLTVPMFLSLFSR	Oxidation (M)	1723.8967	0.89672749	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				24.216	24.216	2	1.9665E-38	20128	DP1141_2	171.62	141.69			37193000	1194	410	1119	2024	2879;2880	2880	350	2	9606
NSSDSAIDNPKPNKLPK	Unmodified	1823.9377	0.93774068	184	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	2	2	0		1				14.339	14.339	4	0.005556	5090	DP1141_2	78.985	49.518			8548100	1195	184	1120	2025	2881	2881		0	9606
NSSYFVEWIPNNVK	Unmodified	1695.8257	0.82567103	81;258;312;308	P07437;P68371;P04350;Q9BVA1;Q13885;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		21.378	21.378	2	9.5806E-285	15930	DP1141_3	322.27	322.27			345970000	1196	81;258;312;308	1121	2026;2027	2882;2883	2882		2	9606
NSVSNFLHSLER	Unmodified	1401.7001	0.70007659	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					20.436	20.436	2;3	0.0013407	14685	DP1141_1	128.51	78.48			1531399999.9999998	1197	302	1122	2028;2029	2884;2885	2885		2	9606
NSVTPDMMEEMYKK	3 Oxidation (M)	1749.726	0.72595827	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	3	1	3	1.41	1			2		14.04	14.04	2;3	0.0093222	5281	DP1141_4	73.415	56.749			50773000	1198	185	1123	2030;2031;2032	2886;2887;2888	2887	173;174;175	3	9606
NSWQEGDTYTCVVMHEALHNHYTQK	Oxidation (M)	3063.324	0.32395305	3	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	1	0	3	0			1			17.995	17.995	4	4.4356E-06	10616	DP1141_3	91.883	51.564		+	23097000	1199	3	1124	2033	2889	2889	3	1	
NTGVILANDANAER	Unmodified	1456.727	0.72701962	183	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.616	16.616	2	1.1157E-32	8600	DP1141_2	175.74	136.2			73276000	1200	183	1125	2034	2890;2891	2890		2	9606
NTHATTHNAYDLEVIDIFK	Unmodified	2201.0753	0.075296793	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				20.4	20.4	3	0.0026508	14588	DP1141_2	94.325	64.706			136560000	1201	89	1126	2035	2892	2892		1	9606
NTHATTHNAYDLEVIDIFKIER	Unmodified	2599.3031	0.3030649	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				20.1	20.1	3	8.501E-08	14604	DP1141_2	100.19	79.266			50965000	1202	89	1127	2036	2893	2893		1	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	Unmodified	3141.4195	0.41950423	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	3.33	1.25		1	1		1	13.385	13.385	4;5	6.6021E-58	4120	DP1141_2	160.23	148.31			52977000	1203	182	1128	2037;2038;2039	2894;2895;2896;2897	2894		4	9606
NVMVEPHRHEGVFICR	Oxidation (M)	1994.9567	0.95671876	126	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	1	1	4	0				1		15.677	15.677	4	0.0076484	7891	DP1141_4	77.776	62.853			27191000	1204	126	1129	2040	2898	2898	137	0	9606
NVQDAIADAEQR	Unmodified	1328.6321	0.6320566	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			1			17.804	17.804	2	0.023283	10229	DP1141_3	119.27	90.697		+	62231000	1205	15	1130	2041	2899	2899		0	9606
NVQDAIADAEQRGEHALK	Unmodified	1963.9712	0.97116607	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2	0		1				18.999	18.999	3	0.033103	12427	DP1141_2	57.499	27.689		+	58524000	1206	15	1131	2042	2900	2900		1	9606
NVQLQENEIR	Unmodified	1241.6364	0.6364137	164	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3	1.63	1		1		1	16.363	16.363	2	3.9247999999999997E-59	8202	DP1141_5	193.1	148.75			691210000	1207	164	1132	2043;2044;2045	2901;2902;2903;2904	2903		4	9606
NVSSFPDDATSPLQENR	Unmodified	1875.8599	0.85988429	205	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			18.404	18.404	2	0.024473	11457	DP1141_3	95.183	83.207			9933100	1208	205	1133	2046	2905	2905		0	9606
NVTEMAMNPHIK	2 Oxidation (M)	1415.6537	0.65372002	408	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	2	0	2	0		1				14.109	14.109	3	0.0082267	4800	DP1141_2	74.611	35.651			7789500	1209	408	1134	2047	2906;2907	2907	346;347	2	9606
NVTLPAVFK	Unmodified	987.57532	0.57531699	163	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			19.604	19.604	2	0.028346	13053	DP1141_3	98.458	31.659			77038000	1210	163	1135	2048	2908	2908		1	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	Unmodified	3256.3889	0.38893238	255	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		14.744	14.744	3	1.2944E-22	6733	DP1141_4	130.43	111.66			161280000	1211	255	1136	2049	2909;2910;2911	2911		3	9606
NYSPYYNTIDDLKDQIVDLTVGNNK	Unmodified	2901.4032	0.40323245	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	2	0		1				23.309	23.309	3	0.00030822	18819	DP1141_2	88.627	69.68		+	11271000	1212	14	1137	2050	2912;2913	2913		2	9606
PAASSPETPSAGQQEAK	Unmodified	1654.7798	0.77984305	440	Q9NQS7	INCENP	Inner centromere protein	yes	yes	0	0	0	2	0		1				13.926	13.926	2	0.0016752	4485	DP1141_2	119.39	72.084			2416900	1213	440	1138	2051	2914	2914		1	9606
PAPAVGEAEDKENQQATSGPNQPSVR	Unmodified	2676.2739	0.27394961	113	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3	0			1			15.407	15.407	3	1.7538E-11	6544	DP1141_3	104.23	86.731			97971000	1214	113	1139	2052	2915	2915		1	9606
PGASLPPLDLQALEK	Unmodified	1547.8559	0.85590853	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			21.014	21.014	2	8.5298E-95	15472	DP1141_2	229.56	189.93			223380000	1215	101	1140	2053;2054;2055	2916;2917;2918;2919;2920;2921	2919		6	9606
PGGGPGLSTPGGHPKPPHR	Unmodified	1801.9336	0.93359877	131	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	2	0		1				13.926	13.926	4	0.0020037	4467	DP1141_2	89.136	70.723			9740700	1216	131	1141	2056	2922	2922		1	9606
PKIVLNGVTVDFPFQPYKCQQEYMTK	Acetyl (Protein N-term);Oxidation (M)	3187.5722	0.57222881	457	Q9NZ71	RTEL1	Regulator of telomere elongation helicase 1	yes	yes	1	1	2	4	0				1		15.733	15.733	3	0.034703	8013	DP1141_4	40.669	16.6			0	1217	457	1142	2057	2923	2923	373	1	9606
PSSGTVQELNFR	Unmodified	1333.6626	0.66262845	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					17.842	17.842	2	0.00013952	10478	DP1141_1	156.48	84.788			0	1218	302;31	1143	2058	2924	2924		1	9606
PVLNFYEANFPANVMDVIAR	Oxidation (M)	2295.1358	0.13578856	116	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	3	0			2			22.785	22.785	2;3	7.9191E-24	17942	DP1141_3	155.56	105.33			6815100	1219	116	1144	2059;2060	2925;2926;2927	2925	131	3	9606
PVQDLIK	Unmodified	811.48035	0.48035398	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				16.813	16.813	2	0.00023706	8964	DP1141_2	137.18	41.827			385180000	1220	89	1145	2061	2928	2928		0	9606
PYGLDWAELSR	Unmodified	1305.6354	0.63535107	32	O14525	ASTN1	Astrotactin-1	yes	yes	0	0	0	1	0	1					18.258	18.258	2	0.01745	11277	DP1141_1	104.06	29.013			2223200000	1221	32	1146	2062	2929	2929		1	9606
QADVFPDRDHFGR	Unmodified	1558.7277	0.72768832	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			1	1		16.572	16.572	2	1.3222E-09	8422	DP1141_3	150.15	123.04			124950000	1222	436	1147	2063;2064	2930;2931;2932	2930		2	9606
QAQAAVLAVLPR	Unmodified	1235.735	0.73500553	407	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		19.396	19.396	2	4.1342E-06	13868	DP1141_4	133.57	98.422			56897000	1223	407	1148	2065	2933	2933		0	9606
QAQIEVVPSASALIIK	Unmodified	1665.9665	0.96652161	146	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	20.472	20.472	2	0.00039108	14941	DP1141_5	175.74	115.66			383450000	1224	146	1149	2066	2934	2934		1	9606
QAQQQQQQQQGSRPPGLSK	Unmodified	2121.0675	0.067526074	362	Q8IWI9	MGA	MAX gene-associated protein	yes	yes	0	0	1	2	0		1				13.087	13.087	3	0.0041379	3476	DP1141_2	78.441	46.558			648790	1225	362	1150	2067	2935	2935		1	9606
QAVDVSPLR	Unmodified	983.53999	0.53999412	187	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	16.52	16.52	2	0.035242	8609	DP1141_5	101.25	64.094			0	1226	187	1151	2068	2936	2936		1	9606
QAVTNPNNTFYATK	Unmodified	1567.7631	0.76307078	168	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			16.613	16.613	2	2.7591E-108	8315	DP1141_3	199.82	139.13			61428000	1227	168	1152	2069	2937	2937		0	9606
QDAQSLHGDIPQK	Unmodified	1435.7056	0.7055559	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	0	1					14.825	14.825	3	0.0096907	5533	DP1141_1	76.073	38.745			36640000	1228	443	1153	2070	2938	2938		1	9606
QDHPSSMGVYGQESGGFSGPGENR	Oxidation (M)	2495.0408	0.040778555	274	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	1	0	2	0		1				16.315	16.315	3	0.033646	8029	DP1141_2	42.661	32.336			50906000	1229	274	1154	2071	2939	2939	229	1	9606
QEFEKQDELKR	Unmodified	1448.726	0.72595699	358	Q86VP6;O75155	CAND1;CAND2	Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2	yes	no	0	0	2	2	0		1				14.073	14.073	3	0.016953	4669	DP1141_2	88.056	37.573			8708100	1230	358	1155	2072	2940	2940		0	9606
QEGIIFIGPPPSAIR	Unmodified	1593.8879	0.88787736	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	21.015	21.015	2	3.2074E-95	15498	DP1141_2	236.11	210.73			834620000	1231	399	1156	2073;2074;2075;2076;2077	2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951	2943		11	9606
QEYDESGPSIVHR	Unmodified	1515.6954	0.69538514	254	P63261;P60709;Q6S8J3;A5A3E0;Q9BYX7;P0CG38;P0CG39	ACTG1;ACTB;POTEE;POTEF;POTEKP;POTEI;POTEJ	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member I;POTE ankyrin domain family member J	yes	no	0	0	0	4	0				1		15.776	15.776	3	0.0017969	8006	DP1141_4	116.84	83.608			27010000	1232	254	1157	2078	2952	2952		0	9606
QFGFIVLTTSAGIMDHEEAR	Oxidation (M)	2237.0787	0.078667612	229	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	1	0	5	0					1	20.921	20.921	3	1.6574E-07	15635	DP1141_5	103.99	79.946			22865000	1233	229	1158	2079	2953	2953	196	1	9606
QFSSADEAALKEPIIK	Unmodified	1745.92	0.91996535	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.004	18.004	3	0.0021794	10732	DP1141_3	100.11	73.964			288580000	1234	436	1159	2080	2954	2954		1	9606
QGDEVSVHYDPMIAK	Oxidation (M)	1703.7825	0.78248559	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			16.707	16.707	3	0.004276	8590	DP1141_3	74.133	53.04			63774000	1235	399	1160	2081	2955;2956	2956	339	2	9606
QGDEVSVHYDPMIAK	Unmodified	1687.7876	0.78757097	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.586	17.586	3	0.00029942	9863	DP1141_3	132.51	97.206			21756000	1236	399	1160	2082	2957;2958	2958		2	9606
QGEELEVVQK	Unmodified	1157.5928	0.59281755	422	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			16.106	16.106	2	0.026475	7486	DP1141_3	113.62	59.011			0	1237	422	1161	2083	2959	2959		1	9606
QGGGGGGGSVPGIER	Unmodified	1283.6218	0.62182627	204	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			15.403	15.403	2	0.0088099	6451	DP1141_3	100.22	78.372			57791000	1238	204	1162	2084	2960	2960		1	9606
QGPLHGMLINTPYVTK	Oxidation (M)	1783.9291	0.92909025	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					17.859	17.859	2;3	0.0016938	10528	DP1141_1	121.21	84.537			564120000	1239	302	1163	2085;2086	2961;2962;2963;2964	2964	260	4	9606
QGPLHGMLINTPYVTK	Unmodified	1767.9342	0.93417563	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				19.038	19.038	2;3	3.8632E-63	12481	DP1141_1	215.02	153.46			309580000	1240	302	1163	2087;2088;2089	2965;2966;2967;2968;2969	2968		4	9606
QGTIFLAGPPLVK	Unmodified	1339.7864	0.7863724	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		20.447	20.447	2	0.0002718	15511	DP1141_4	112.75	96.741			132300000	1241	436	1164	2090;2091	2970;2971;2972;2973	2973		4	9606
QGVDADINGLR	Unmodified	1156.5836	0.58364985	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					17.36	17.36	2	3.6353E-17	9746	DP1141_1	169.44	62.009		+	123620000	1242	14	1165	2092	2974;2975	2974		2	9606
QIDATFVR	Unmodified	948.50288	0.50288033	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		17.195	17.195	2	0.013151	10425	DP1141_4	124.59	69.83			94620000	1243	330	1166	2093	2976	2976		1	9606
QILDPAASVTGSR	Unmodified	1313.6939	0.69392858	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				17.903	17.903	2	1.9535E-11	10751	DP1141_2	155.11	80.942			113130000	1244	182	1167	2094	2977;2978	2978		2	9606
QILIACSPVSSVR	Unmodified	1428.7759	0.77588407	340	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2	0		1				18.673	18.673	2	6.7734E-05	11936	DP1141_2	114.4	58.388			0	1245	340	1168	2095	2979	2979		1	9606
QISNLQQSISDAEQR	Unmodified	1715.8438	0.84384029	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				18.498	18.498	2	5.9064E-237	11697	DP1141_2	250.48	203.53		+	188830000	1246	65	1169	2096	2980	2980		1	9606
QISNLQQSISDAEQRGENALKDAK	Unmodified	2642.326	0.32598518	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	1.5	0.5	1	1				20.218	20.218	4	1.2682E-12	14341	DP1141_1	116.43	87.152		+	111710000	1247	65	1170	2097;2098	2981;2982	2981		2	9606
QISVGFIGYPNVGK	Unmodified	1477.7929	0.79291434	311	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				20.335	20.335	2	0.0028583	14452	DP1141_2	108.47	75.382			9486700	1248	311	1171	2099	2983	2983		1	9606
QITVNDLPVGR	Unmodified	1210.667	0.66698555	152	P32119;Q06830	PRDX2;PRDX1	Peroxiredoxin-2;Peroxiredoxin-1	yes	no	0	0	0	5	0					1	18.337	18.337	2	1.1527999999999999E-46	11586	DP1141_5	191.17	140.54			64836000	1249	152	1172	2100	2984;2985	2985		2	9606
QKLDPAASVTGSK	Unmodified	1300.6987	0.69867961	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		2				14.82	14.82	2;3	7.4967E-55	5873	DP1141_2	203.51	92.643			76392000	1250	182	1173	2101;2102	2986;2987	2987		2	9606
QKVEGTEPTTAFNLFVGNLNFNK	Unmodified	2567.302	0.30200227	123	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				22.121	22.121	3	0.018745	17154	DP1141_2	59.163	45.432			108770000	1251	123	1174	2103	2988	2988		1	9606
QLASGLLLVTGPLVLNR	Unmodified	1763.0669	0.066904359	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	3.5	1.5	1			2	1	23.137	23.137	2;3	0	19402	DP1141_4	310.34	273.02			126740000	1252	276	1175	2104;2105;2106;2107	2989;2990;2991;2992;2993;2994	2991		5	9606
QLFHPEQLITGK	Unmodified	1409.7667	0.76669959	257;409	P68363;P68366;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65;Q6PEY2	TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA8;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain	no	no	0	0	0	2	1	2		2			18.993	18.993	2;3	8.464500000000001E-215	12191	DP1141_3	248.98	0			554160000	1253	257;409	1176	2108;2109;2110;2111	2995;2996;2997;2998;2999	2999		4	9606
QLFHPEQLITGKEDAANNYAR	Unmodified	2414.1979	0.19787154	257;409	P68363;P68366;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65	TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain	no	no	0	0	1	4	0.894			2	1	2	18.655	18.655	3;4	0	11671	DP1141_3	287.31	243.98			561630000	1254	257;409	1177	2112;2113;2114;2115;2116	3000;3001;3002;3003;3004;3005;3006	3002		7	9606
QLTEEDGVHSVIEENIK	Unmodified	1938.9535	0.95345032	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	2	1				1	18.328	18.328	2;3	0.00044609	11189	DP1141_1	93.237	63.065			769030000	1255	302	1178	2117;2118	3007;3008;3009	3007		3	9606
QLTQTTHTDKVPGDEDKGINVFR	Unmodified	2598.3038	0.30379318	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				16.639	16.639	5	0.018089	8690	DP1141_2	50.255	41.257			18685000	1256	182	1179	2119	3010	3010		0	9606
QNAQCLHGDIAQSQR	Unmodified	1724.8013	0.80126397	408	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				14.426	14.426	3	0.00085507	5248	DP1141_2	107.61	64.014			21203000	1257	408	1180	2120	3011	3011		1	9606
QNLEPLFEQYINNLR	Unmodified	1889.9636	0.9635615	13	CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538	KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	0	1.5	0.5	1	1				23.447	23.447	2	0	19080	DP1141_1	267.07	199.96		+	29809000	1258	13	1181	2121;2122	3012;3013;3014;3015;3016;3017;3018	3012		7	9606
QNLEPLFEQYINNLRR	Unmodified	2046.0647	0.064672527	13	CON__P13647;P13647;CON__P48668;CON__P04259;CON__P02538;P48668;P02538	KRT5;KRT6C;KRT6A	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A	no	no	0	0	1	2.5	1.5	1			1		22.322	22.322	3	0.0028305	18154	DP1141_4	78.486	51.278		+	15444000	1259	13	1182	2123;2124	3019;3020	3020		2	9606
QPAPGGGGGGGPSPCGPGGGGR	Unmodified	1789.7914	0.79142757	429	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1	0	1					14.29	14.29	2	5.8107E-10	4781	DP1141_1	131.24	94.256			2767100	1260	429	1183	2125	3021	3021		1	9606
QPILIYIPPYAELR	Unmodified	1684.9552	0.95522864	31	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.743	22.743	2	0.0027147	18047	DP1141_1	121.08	121.08			7467200	1261	31	1184	2126	3022;3023;3024	3024		3	9606
QQVPSGESAILDR	Unmodified	1398.7103	0.71030693	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0.816	1	1	1			17.299	17.299	2	1.8507E-104	9710	DP1141_2	208.15	112.11			878120000	1262	89	1185	2127;2128;2129	3025;3026;3027;3028;3029;3030	3027		6	9606
QREELGQGLQGVEQK	Unmodified	1697.8697	0.86966111	286	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			16.126	16.126	3	0.0014145	7595	DP1141_3	127.03	89.027			5209200	1263	286	1186	2130	3031	3031		1	9606
QSFEVLKR	Unmodified	1005.5607	0.56072956	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.5	1.5		1			1	15.863	15.863	2	0.0018774	7525	DP1141_2	138.24	74.035			227820000	1264	316	1187	2131;2132	3032;3033	3032		2	9606
QSLEASLAETEGR	Unmodified	1389.6736	0.67358707	12	P13645;CON__P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.5	1.5		1			1	18.243	18.243	2	4.8371E-197	11258	DP1141_2	242.97	199.32		+	231850000	1265	12	1188	2133;2134	3034;3035;3036	3034		3	9606
QSNVAAPGDATPPAEK	Unmodified	1551.7529	0.75290002	396	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2.5	0.5		1	1			14.768	14.768	2	1.8240999999999998E-23	5733	DP1141_2	151.66	112.91			16806000	1266	396	1189	2135;2136	3037;3038	3037		0	9606
QSNVAAPGDATPPAEKK	Unmodified	1679.8479	0.84786304	396	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2.5	0.5		1	1			13.858	13.858	3	5.8378E-09	4358	DP1141_2	141.1	117.02			28080000	1267	396	1190	2137;2138	3039;3040;3041	3040		3	9606
QTIQYIHPADAVK	Unmodified	1482.7831	0.78307794	424	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					16.617	16.617	3	0.034464	8466	DP1141_1	56.956	16.578			34523000	1268	424	1191	2139	3042	3042		1	9606
QTLLFSATMPK	Oxidation (M)	1251.6533	0.65330932	468	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	1	0	3	0			1			18.904	18.904	2	0.022699	11458	DP1141_3	117.01	62.403			34112000	1269	468	1192	2140	3043	3043	379	0	9606
QTPAPAASVTGSR	Unmodified	1241.6364	0.6364137	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0.816		1	1	1		14.607	14.607	2	6.927800000000001E-70	5370	DP1141_2	195.83	130.36			160910000	1270	182	1193	2141;2142;2143	3044;3045;3046;3047;3048	3044		5	9606
QTTLAFKPIKK	Unmodified	1273.7758	0.77580772	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	2	1	0	1					15.257	15.257	3	0.019337	6178	DP1141_1	86.898	50.595			20946000	1271	100	1194	2144	3049	3049		0	9606
QTTTGSAVPIR	Unmodified	1129.6091	0.60913632	31	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					14.999	14.999	2	0.029991	5678	DP1141_1	125.16	47.238			29536000	1272	31	1195	2145	3050	3050		0	9606
QVFTNAEVYNCR	Unmodified	1499.6827	0.68271197	467	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	2	0		1				17.497	17.497	2	0.024807	10106	DP1141_2	84.817	54.425			37850000	1273	467	1196	2146	3051	3051		1	9606
QVGYENAGTVEFLVDR	Unmodified	1795.8741	0.87407779	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				36.764	36.764	2	0.00015416	35032	DP1141_2	113.24	82.511			1823600	1274	101	1197	2147;2148	3052;3053;3054;3055	3054		4	9606
QVHPDTGISSK	Unmodified	1167.5884	0.58840088	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q8N257;Q96A08;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	0	5	0					1	13.977	13.977	2	0.028735	3722	DP1141_5	89.029	57.269			1302700	1275	47;133;216	1198	2149	3056	3056		1	9606
QVLDNLTMEK	Oxidation (M)	1205.5962	0.59618837	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	0		1				17.097	17.097	2	0.0057432	9421	DP1141_2	140.11	102.6		+	168510000	1276	14	1199	2150	3057	3057	11	1	9606
QVLDNLTMEK	Unmodified	1189.6013	0.60127375	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0		1				17.998	17.998	2	0.030227	10963	DP1141_2	91.265	45.107		+	43890000	1277	14	1199	2151	3058	3058		1	9606
QVLIASHLPSYELR	Unmodified	1624.8937	0.89369102	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					19.058	19.058	2;3	5.966499999999999E-285	12440	DP1141_1	255.41	132.45			542540000	1278	302	1200	2152;2153	3059;3060;3061	3060		3	9606
QVQAEVPGSPIFVMR	Oxidation (M)	1672.8607	0.86067633	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.179	19.179	2	8.8163E-10	12710	DP1141_1	147.26	111.99			151090000	1279	302	1201	2154	3062;3063	3062	261	2	9606
QVQAEVPGSPIFVMR	Unmodified	1656.8658	0.86576171	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.436	20.436	2	1.6094E-157	14524	DP1141_1	271.65	223.95			309530000	1280	302	1201	2155	3064;3065	3064		2	9606
QVQPQVQPQAHSQGPR	Unmodified	1783.9078	0.90777795	472	Q9ULV3	CIZ1	Cip1-interacting zinc finger protein	yes	yes	0	0	0	2	0		1				13.845	13.845	3	0.0064299	4334	DP1141_2	108.36	80.59			0	1281	472	1202	2156	3066	3066		1	9606
QVSDLISVLR	Unmodified	1128.6503	0.65027285	116	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.67	20.67	2	0.020399	14673	DP1141_3	96.668	39.491			0	1282	116	1203	2157	3067	3067		1	9606
QWYESHYALPLGR	Unmodified	1618.7892	0.78922595	228	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.393	19.393	3	0.033389	13372	DP1141_5	48.115	10.787			113310000	1283	228	1204	2158	3068	3068		1	9606
RAFLIEEQK	Unmodified	1132.6241	0.6240581	190	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	1	5	0					1	16.238	16.238	2	0.031801	8161	DP1141_5	109.01	14.898			65203000	1284	190	1205	2159	3069	3069		1	9606
RAPFDLFENK	Unmodified	1235.6299	0.62987176	84	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	2	0		1				19.49	19.49	2	0.020028	12976	DP1141_2	91.087	29.408			13736000	1285	84	1206	2160	3070	3070		0	9606
RAPSSPVAKPGPVK	Unmodified	1389.8092	0.80923311	422	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	2	3	0			1			12.718	12.718	3	0.02201	2692	DP1141_3	94.023	78.59			11281000	1286	422	1207	2161	3071	3071		1	9606
RAYIAYELNSVQHR	Unmodified	1718.8853	0.8852516	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.161	17.161	3	1.0576000000000001E-224	9291	DP1141_1	246.64	198.1			723080000	1287	302	1208	2162	3072;3073	3073		2	9606
RCGVQSFYTPR	Unmodified	1369.6561	0.65610329	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	1	4	0				1		16.363	16.363	3	5.5183E-11	8987	DP1141_4	132.17	85.579			45304000	1288	357	1209	2163	3074	3074		1	9606
RDGWPAMGIHGDK	Oxidation (M)	1454.6725	0.67248163	116	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	1	3	0			1			15.016	15.016	3	0.036179	5752	DP1141_3	52.5	22.956			5752000	1289	116	1210	2164	3075	3075	132	1	9606
RDPALNSGVSQKPDPAK	Unmodified	1778.9275	0.92751034	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	2	3	1.41	1	1	1	1	1	13.829	13.829	3	2.2074E-35	4359	DP1141_2	164.2	142.39			189590000	1290	100	1211	2165;2166;2167;2168;2169	3076;3077;3078;3079;3080;3081;3082;3083;3084;3085;3086	3078		11	9606
REEEEFNTGPLSVLTQSVK	Unmodified	2162.0855	0.085527128	237	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	1	5	0					1	20.671	20.671	3	0.012811	15298	DP1141_5	65.887	35.698			16543000	1291	237	1212	2170	3087	3087		0	9606
RFPPYHVGQTFDR	Unmodified	1618.8005	0.80045934	113	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3	0			1			17.498	17.498	3	0.032198	10206	DP1141_3	61.11	38.532			33396000	1292	113	1213	2171	3088	3088		0	9606
RFVTPSEPVAHSR	Unmodified	1481.7739	0.77391024	35	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	1	1	0	1					14.748	14.748	3	0.0007388	5433	DP1141_1	129.17	102.03			17850000	1293	35	1214	2172	3089;3090	3089		2	9606
RGFAFVTFDDHDSVDKIVIQK	Unmodified	2436.2438	0.24375911	88	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	2	4	0				1		19.627	19.627	4	0.036055	14350	DP1141_4	60.938	13.25			18679000	1294	88	1215	2173	3091	3091		1	9606
RGPCIIYNEDNGIIK	Unmodified	1760.888	0.88795372	163	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			18.004	18.004	3	0.0026427	10686	DP1141_3	81.703	41.461			21605000	1295	163	1216	2174	3092	3092		1	9606
RHPEYAVSVLLR	Unmodified	1438.8045	0.80448208	9	CON__P02769			yes	yes	0	0	1	4	1			1		1	17.951	17.951	3	8.1439E-13	10997	DP1141_5	139.19	98.814		+	197970000	1296	9	1217	2175;2176	3093;3094;3095	3094		3	9606
RIGYPVMIK	Oxidation (M)	1091.6161	0.61613595	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	1	1		1			16.432	16.432	2	0.0073581	8255	DP1141_1	101.6	67.428			163620000	1297	399	1218	2177;2178	3096;3097;3098	3097	340	3	9606
RIPIHNEDITYDELVLMMQR	2 Oxidation (M)	2517.2356	0.23557896	382	Q92734	TFG	Protein TFG	yes	yes	0	2	1	3	0			1			19.105	19.105	4	0.0010806	12358	DP1141_3	89.374	62.594			23352000	1298	382	1219	2179	3099	3099	321;322	1	9606
RIPIHNEDITYDELVLMMQR	Oxidation (M)	2501.2407	0.24066434	382	Q92734	TFG	Protein TFG	yes	yes	0	1	1	3	0			1			20.026	20.026	4	0.015937	13868	DP1141_3	53.519	33.764			13036000	1299	382	1219	2180	3100	3100	321;322	1	9606
RIPVQAVWAGWGHASENPK	Unmodified	2102.081	0.080991294	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1	0	2					19.058	19.058	3;4	2.6402E-146	12438	DP1141_1	216.71	191.8			672710000	1300	302;31	1220	2181;2182	3101;3102	3101		2	9606
RISGLIYEETR	Unmodified	1335.7147	0.71466402	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	17.354	17.354	2	2.2325E-24	10064	DP1141_5	175.74	122.62			2621500000	1301	242	1221	2183	3103	3103		1	9606
RKGDEVDGVDEVAK	Unmodified	1515.7529	0.75290002	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2.4	1.02	1	2	1	1		14.31	14.31	2;3	0	4976	DP1141_2	249.98	203.98			458480000	1302	89	1222	2184;2185;2186;2187;2188	3104;3105;3106;3107;3108;3109;3110;3111	3108		7	9606
RLETLLR	Unmodified	899.55525	0.55525025	62	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	1	5	0					1	16.316	16.316	2	0.0098717	8270	DP1141_5	113.5	24.13			87022000	1303	62	1223	2189	3112	3112		1	9606
RLLLEDLVK	Unmodified	1097.6808	0.6808447	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.836	19.836	2	0.01694	13781	DP1141_1	113.71	64.912			234170000	1304	302	1224	2190	3113	3113		1	9606
RLLLEDLVKK	Unmodified	1225.7758	0.77580772	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					18.546	18.546	3	0.012387	11626	DP1141_1	112.85	93.218			0	1305	302	1225	2191	3114	3114		1	9606
RLNISYTR	Unmodified	1021.5669	0.56687757	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			15.612	15.612	2	0.0015577	6576	DP1141_3	139.97	78.999			507840000	1306	399	1226	2192	3115;3116	3115		2	9606
RLQIEESSKPVR	Unmodified	1440.8049	0.80487601	106	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	2	4	0				1		14.321	14.321	3	0.0021385	5851	DP1141_4	107.53	71.082			21769000	1307	106	1227	2193	3117	3117		1	9606
RLTFLVAQK	Unmodified	1074.655	0.6549643	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				17.528	17.528	2	0.0065662	10016	DP1141_1	115.49	40.385			898900000	1308	302	1228	2194;2195	3118;3119	3118		0	9606
RMALLMAEMSR	2 Oxidation (M)	1339.641	0.64104685	120	P18206	VCL	Vinculin	yes	yes	0	2	1	1	0	1					18.052	18.052	2	0.034457	10826	DP1141_1	57.859	15.858			0	1309	120	1229	2196	3120	3120	133;134	1	9606
RNLDIERPTYTNLNR	Unmodified	1873.9759	0.97585752	257;409	P68363;P68366;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65;Q6PEY2	TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA8;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain	no	no	0	0	2	3	0			1			16.67	16.67	3	0.013618	8360	DP1141_3	81.904	47.627			81241000	1310	257;409	1230	2197	3121	3121		0	9606
RNPDTQWITKPVHK	Unmodified	1718.9216	0.92163711	221	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	2	3	2	1				1	15.22	15.22	4	0.00014259	6225	DP1141_1	117.27	88.628			138440000	1311	221	1231	2198;2199	3122;3123;3124	3122		3	9606
RPAEDMEEEQAFKR	Oxidation (M)	1750.7944	0.79444726	223	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3	0			1			14.507	14.507	3	9.6093E-12	4905	DP1141_3	154.13	123.09			40574000	1312	223	1232	2200	3125;3126	3125	194	2	9606
RPEGPGAQAPSSPR	Unmodified	1405.7062	0.7062246	172	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	1	3	0			1			12.819	12.819	3	0.0079548	2925	DP1141_3	73.156	38.258			752540	1313	172	1233	2201	3127	3127		1	9606
RPENSLLEETLHFDHAVR	Unmodified	2162.0869	0.086864532	28	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2	0		1				19.057	19.057	4	0.017805	12620	DP1141_2	59.585	33.511			32177000	1314	28	1234	2202	3128	3128		1	9606
RPGAALDPGCVLAK	Unmodified	1423.7606	0.76056836	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				17.05	17.05	2;3	9.5143E-33	9218	DP1141_1	155.33	120.18			1631799999.9999998	1315	302	1235	2203;2204;2205	3129;3130;3131;3132;3133;3134	3132		5	9606
RPGAVLEAGCVVAR	Unmodified	1453.7824	0.78236643	31	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.623	16.623	3	0.021417	8457	DP1141_1	77.776	57.995			33860000	1316	31	1236	2206	3135	3135		0	9606
RPILTIITLEDSSGNLLGR	Unmodified	2067.1688	0.16880325	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	1	3	0			1			21.907	21.907	3	4.8772E-106	16591	DP1141_3	200.9	174.49			25965000	1317	67	1237	2207	3136;3137;3138	3136		3	9606
RPKEEEWDPEYTPK	Unmodified	1802.8475	0.84752869	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	2	0		1				16.215	16.215	3	1.6852E-07	7966	DP1141_2	145.81	110.01			51662000	1318	456	1238	2208	3139	3139		1	9606
RPLEMEQQQAYRPEMK	2 Oxidation (M)	2064.9721	0.97209405	415	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	2	2	2.33	1.25	1	1		1		14.325	14.325	3	0.00025866	5138	DP1141_2	125.61	101.55			112250000	1319	415	1239	2209;2210;2211	3140;3141;3142;3143	3141	353;354	4	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	Oxidation (M)	3238.5174	0.51738456	255	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	3.67	0.471			1	2		15.688	15.688	3;4	1.3677E-15	7980	DP1141_4	104.7	88.877			462460000	1320	255	1240	2212;2213;2214	3144;3145;3146;3147;3148	3147	211	5	9606
RSGASGASAAPAASAAAALAPSATR	Unmodified	2140.0985	0.098491851	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	1	4	0				1		16.905	16.905	3	1.3726E-13	9966	DP1141_4	116.44	96.724			56713000	1321	357	1241	2215	3149;3150;3151	3150		3	9606
RTDEEGKDVPDHAVLEMK	Oxidation (M)	2083.9844	0.98443288	415	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	1	2	2	0		1				14.719	14.719	3	7.6571E-05	5514	DP1141_2	119.92	79.939			9616100	1322	415	1242	2216	3152	3152	355	1	9606
RTEEGPTLSYGR	Unmodified	1364.6684	0.66844211	180	P43243	MATR3	Matrin-3	yes	yes	0	0	1	2	0		1				15.461	15.461	3	0.0051939	6769	DP1141_2	100.02	58.333			0	1323	180	1243	2217	3153	3153		1	9606
RTEITIVKPQESAHR	Unmodified	1763.9642	0.9642302	466	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	2	3	0			1			14.5	14.5	4	0.0064798	5000	DP1141_3	78.69	46.405			4294900	1324	466	1244	2218	3154	3154		1	9606
RTHLASDDLYK	Unmodified	1317.6677	0.66771383	430	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	1	4	0				1		14.837	14.837	3	0.027435	6622	DP1141_4	77.387	55.991			7373300	1325	430	1245	2219	3155	3155		0	9606
RTLGSSDTQQLR	Unmodified	1360.7059	0.70589025	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	1	3	0			1			14.342	14.342	3	0.0079017	4819	DP1141_3	96.23	50.35			2913200	1326	412	1246	2220	3156	3156		0	9606
RTNSTFNQVVLK	Unmodified	1405.7678	0.76776222	284	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					2	16.374	16.374	2;3	0.0089094	8233	DP1141_5	63.602	35.959			73627000	1327	284	1247	2221;2222	3157;3158	3157		2	9606
RVDPVYIHLAER	Unmodified	1466.7994	0.7993967	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.5	1.5	2			2		17.26	17.26	2;3	2.518E-13	9523	DP1141_1	161.87	128.33			1465999999.9999998	1328	302	1248	2223;2224;2225;2226	3159;3160;3161;3162;3163	3159		5	9606
RVIERPPLTQQQAAQK	Unmodified	1862.0486	0.048628533	353	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	2	4	0				1		14.675	14.675	3	0.01504	6360	DP1141_4	71.513	42.046			20496000	1329	353	1249	2227	3164	3164		0	9606
RVPLEQPEMIPSQK	Oxidation (M)	1666.8712	0.87124102	368	Q8NDW8	TTC21A	Tetratricopeptide repeat protein 21A	yes	yes	0	1	1	2	0		1				17.998	17.998	2	0.004643	11045	DP1141_2	91.658	44.357			50759000	1330	368	1250	2228	3165	3165	314	1	9606
RVSALNSVHCEHVEDEGESR	Unmodified	2309.0455	0.045470003	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	3					14.894	14.894	3;4;5	9.1968E-09	5523	DP1141_1	116.98	90.383			183800000	1331	302	1251	2229;2230;2231	3166;3167;3168;3169;3170	3166		5	9606
RVTIMPKDIQLAR	Oxidation (M)	1555.8868	0.8868315	259	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	yes	no	0	1	2	5	0					1	16.387	16.387	3	0.011004	8294	DP1141_5	89.507	67.732			91722000	1332	259	1252	2232	3171	3171	217	1	9606
RYDDPEVQKDIK	Unmodified	1504.7522	0.75217174	168	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	2	3	0			1			14.707	14.707	3	0.018173	5393	DP1141_3	108.72	47.481			23098000	1333	168	1253	2233	3172	3172		1	9606
RYQDIIHSIHLAR	Unmodified	1620.8849	0.88485767	467	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	1	2	0		1				17.998	17.998	4	0.017496	10785	DP1141_2	66.708	42.482			11081000	1334	467	1254	2234	3173	3173		0	9606
RYQKSTELLIR	Unmodified	1405.8041	0.80414773	259;345	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	2	5	0					1	15.553	15.553	3	4.2498E-10	7034	DP1141_5	158.3	116.06			43460000	1335	259;345	1255	2235	3174	3174		1	9606
SAEEEAADLPTKPTK	Unmodified	1585.7835	0.78353145	377	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					2	15.176	15.176	2;3	0	6355	DP1141_5	303.71	303.71			103070000	1336	377	1256	2236;2237	3175;3176;3177;3178	3177		4	9606
SALETFLR	Unmodified	935.50763	0.50763136	361	Q86Y97	SUV420H2	Histone-lysine N-methyltransferase SUV420H2	yes	yes	0	0	0	3	0			1			19.604	19.604	2	0.00011302	13146	DP1141_3	133.81	85.964			8813300	1337	361	1257	2238	3179	3179		0	9606
SALSCVISK	Unmodified	963.50592	0.5059168	467	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	2	0		1				16.903	16.903	2	0.0234	9137	DP1141_2	90.601	54.983			46134000	1338	467	1258	2239	3180	3180		1	9606
SAPFFIPTIPGLVPR	Unmodified	1610.9184	0.91844921	372	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					23.641	23.641	2	0.010789	19358	DP1141_1	96.756	75.757			6746600	1339	372	1259	2240	3181	3181		1	9606
SDAEPSVFLFKPSDEQLK	Unmodified	2036.0102	0.01023692	16	CON__Q05B55			yes	yes	0	0	1	5	0					1	19.985	19.985	3	0.0074682	14232	DP1141_5	73.833	43.297		+	27479000	1340	16	1260	2241	3182	3182		0	
SDDDGFEIVPIEDPAK	Unmodified	1745.7996	0.79957544	363	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				20.715	20.715	2	3.264E-06	15056	DP1141_2	175.48	125.03			14422000	1341	363	1261	2242	3183	3183		1	9606
SDLEMQYETLQEELMALK	2 Oxidation (M)	2202.0072	0.0072017319	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	0	1.5	0.5	1	1				23.411	23.411	2	2.7166E-124	19003	DP1141_2	209.11	134.41		+	34607000	1342	14	1262	2243;2244	3184;3185;3186	3185	12;13	3	9606
SDLEMQYETLQEELMALKK	2 Oxidation (M)	2330.1022	0.10216475	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	1	1.5	0.5	1	1				22.018	22.018	3	5.3306E-74	16869	DP1141_2	191.36	117.52		+	365180000	1343	14	1263	2245;2246	3187;3188;3189;3190	3189	12;13	4	9606
SDLEMQYETLQEELMALKK	Oxidation (M)	2314.1073	0.10725013	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2	0		1				22.301	22.301	3	0.023729	16958	DP1141_2	53.278	37.232		+	34938000	1344	14	1263	2247	3191	3191	12;13	1	9606
SDMNTVLNYIFSHAQVTK	Oxidation (M)	2083.0044	0.004440036	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.938	21.938	3	2.5808E-08	16740	DP1141_1	137.17	101.04			339270000	1345	302	1264	2248	3192	3192	243	1	9606
SDMNTVLNYIFSHAQVTK	Unmodified	2067.0095	0.0095254139	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.344	23.344	3	0.0051486	18836	DP1141_1	70.117	38.47			8037500	1346	302	1264	2249	3193;3194	3193		2	9606
SEGALELADVSNELPGLK	Unmodified	1840.9418	0.941823	291	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				21.462	21.462	2	1.3037E-05	16071	DP1141_2	126.1	80.218			0	1347	291	1265	2250	3195	3195		1	9606
SEQEFQEQLESAR	Unmodified	1579.7114	0.71142914	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			18.081	18.081	2	6.619200000000001E-224	10763	DP1141_3	247.22	181.88			643480000	1348	399	1266	2251;2252	3196;3197;3198	3198		3	9606
SEREVFFMNTQSIVQLVQR	Oxidation (M)	2326.174	0.17396498	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					21.237	21.237	3	0.025507	15703	DP1141_1	67.655	40.847			21878000	1349	302	1267	2253	3199	3199	245	1	9606
SESPKEPEQLR	Unmodified	1298.6466	0.64664404	88	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		14.001	14.001	2;3	1.1194E-34	5276	DP1141_4	178.46	145.85			55901000	1350	88	1268	2254;2255	3200;3201;3202;3203;3204;3205	3202		6	9606
SETAPAAPAAAPPAEK	Acetyl (Protein N-term)	1519.7518	0.75183739	111	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	4.5	0.5				1	1	16.354	16.354	2	5.2929E-05	9041	DP1141_4	133.05	17.723			582150000	1351	111	1269	2256;2257	3206;3207;3208;3209	3206		4	9606
SETAPAAPAAAPPAEK	Unmodified	1477.7413	0.7412727	111	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	4	0				1		15.001	15.001	2	0.017198	6835	DP1141_4	103.44	6.8352			15013000	1352	111	1269	2258	3210	3210		0	9606
SETAPAAPAAAPPAEKAPVK	Acetyl (Protein N-term)	1915.0051	0.005091963	111	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	1	4	0				2		16.063	16.063	2;3	3.4983E-23	8556	DP1141_4	152.11	124.68			311960000	1353	111	1270	2259;2260	3211;3212;3213	3212		3	9606
SETAPAAPAAAPPAEKAPVKK	Acetyl (Protein N-term)	2043.1001	0.10005498	111	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	2	4	0				1		15.001	15.001	3	0.0031209	6928	DP1141_4	92.671	77.791			191180000	1354	111	1271	2261	3214;3215;3216	3215		3	9606
SETAPAAPAAPAPAEKTPVK	Acetyl (Protein N-term)	1945.0157	0.015656649	95	P10412	HIST1H1E	Histone H1.4	yes	yes	1	0	1	4	0				1		16.121	16.121	2	4.7654E-18	8645	DP1141_4	163.62	124.66			0	1355	95	1272	2262	3217	3217		1	9606
SFGLPSIGR	Unmodified	932.50797	0.50796571	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			19.52	19.52	2	5.8924E-06	13229	DP1141_1	153.71	55.188			90581000	1356	72	1273	2263;2264	3218;3219	3218		2	9606
SFNDDAMLIEK	Oxidation (M)	1297.586	0.58601761	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			18.004	18.004	2	0.0034713	10589	DP1141_3	112.36	77.555			33185000	1357	399	1274	2265	3220	3220	338	1	9606
SGASGASAAPAASAAAALAPSATR	Unmodified	1983.9974	0.99738082	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				2		17.894	17.894	2;3	0	11489	DP1141_4	338.92	290.35			270990000	1358	357	1275	2266;2267	3221;3222;3223;3224	3221		4	9606
SGCNHPDLDVQYR	Unmodified	1559.6787	0.67868922	279	Q03405	PLAUR	Urokinase plasminogen activator surface receptor	yes	yes	0	0	0	3	0			1			16.012	16.012	3	7.7594E-24	7420	DP1141_3	159.66	125.87			9098500	1359	279	1276	2268	3225	3225		0	9606
SGELPPNINIKEPR	Acetyl (Protein N-term)	1604.8522	0.85222014	434	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	1	0	1	4	0				1		18.495	18.495	2	0.010448	12676	DP1141_4	81.525	25.718			19579000	1360	434	1277	2269	3226	3226		1	9606
SGGASHSELIHNLR	Unmodified	1476.7433	0.74333839	125	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	5	0					1	14.966	14.966	3	3.6364E-17	6007	DP1141_5	174.72	110.08			48160000	1361	125	1278	2270	3227;3228	3227		2	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	Unmodified	2797.3361	0.33609636	81;258;312	P07437;P68371;P04350;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	1	4	0.816			1	1	1	22.306	22.306	3	1.2214E-165	18162	DP1141_4	210.16	178.4			183450000	1362	81;258;312	1279	2271;2272;2273	3229;3230;3231;3232;3233;3234;3235;3236;3237	3234		9	9606
SGVDGPHFPLSLSTCLFGR	Unmodified	2045.9993	0.99929508	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			21.911	21.911	3	0.0037577	16840	DP1141_2	68.625	34.323			28260000	1363	182	1280	2274;2275	3238;3239;3240	3238		3	9606
SGVSDHWALDDHHALHLTR	Unmodified	2166.0355	0.035497664	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.71	1.16	2		3	2		17.36	17.36	3;4;5	2.5114E-13	9656	DP1141_3	144.25	121.61			1442900000	1364	436	1281	2276;2277;2278;2279;2280;2281;2282	3241;3242;3243;3244;3245;3246;3247;3248;3249	3246		9	9606
SGVSLAALK	Unmodified	844.50182	0.5018177	111;95	P16403;P16402;P10412	HIST1H1C;HIST1H1D;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.4	no	no	0	0	0	4	0				1		17.568	17.568	2	0.014377	11033	DP1141_4	107.01	50.461			338470000	1365	111;95	1282	2283	3250	3250		1	9606
SGVSLAALKK	Unmodified	972.59678	0.59678072	111;95	P16403;P16402;P10412	HIST1H1C;HIST1H1D;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.4	no	no	0	0	1	4	0				1		15.874	15.874	2	0.000172	8240	DP1141_4	159.28	95.97			0	1366	111;95	1283	2284	3251	3251		1	9606
SHTILLVQPTK	Acetyl (Protein N-term)	1277.7343	0.73433683	268	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	5	0					1	18.342	18.342	2	0	11623	DP1141_5	316.72	256.25			0	1367	268	1284	2285	3252	3252		1	9606
SIAFPSIGSGR	Unmodified	1090.5771	0.57710791	50	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		19.104	19.104	2	0.00095103	13158	DP1141_4	119.75	75.939			345090000	1368	50	1285	2286	3253	3253		1	9606
SIFQHIQSAQSQR	Unmodified	1528.7746	0.77463852	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.5	0.5	1	1				16.921	16.921	2;3	0.0024209	9122	DP1141_2	97.631	46.539			328240000	1369	482	1286	2287;2288	3254;3255	3255		2	9606
SILFVPTSAPR	Unmodified	1186.671	0.67100829	107	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	0		1				19.572	19.572	2	0.0037257	13304	DP1141_2	112.11	66.946			3609400	1370	107	1287	2289	3256	3256		1	9606
SILVSPTGPSR	Unmodified	1112.619	0.61897272	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.5	1.12		1	1	1	1	16.856	16.856	2	5.5087E-60	8941	DP1141_2	195.79	105.19			7762799999.999999	1371	316	1288	2290;2291;2292;2293	3257;3258;3259;3260;3261;3262;3263;3264;3265	3257		9	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	Oxidation (M)	2676.216	0.21596573	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	1	1		1			18.081	18.081	3	3.5822E-15	10790	DP1141_3	130.49	118.1			250070000	1372	399	1289	2294;2295	3266;3267	3267	341	2	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	Oxidation (M)	3169.4557	0.4556955	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.75	1.09	1		2	1		16.965	16.965	4;5	1.1809E-26	9102	DP1141_1	136.24	121.4			268440000	1373	399	1290	2296;2297;2298;2299	3268;3269;3270;3271;3272	3268	341	5	9606
SINPDEAVAYGAAVQAAILMGDK	Oxidation (M)	2319.1417	0.1416618	93	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	1	0	3.33	0.471			2	1		23.165	23.165	2;3	7.4841E-77	18388	DP1141_3	178.52	167.86			78198000	1374	93	1291	2300;2301;2302	3273;3274;3275;3276;3277;3278;3279;3280	3278	103	8	9606
SINPLGGFVHYGEVTNDFVMLK	Oxidation (M)	2452.2097	0.20968178	171	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	1	0	1	0	1					22.035	22.035	3	6.1741E-07	16944	DP1141_1	97.49	68.725			7482400	1375	171	1292	2303	3281	3281	159	0	9606
SIPSMVDGLKPGQR	Oxidation (M)	1499.7766	0.77661235	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	1	2	0		1				16.215	16.215	3	0.025234	8025	DP1141_2	78.705	64.074			46807000	1376	100	1293	2304	3282	3282	116	1	9606
SIQFVDWCPTGFK	Unmodified	1583.7442	0.74424959	257	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	yes	no	0	0	0	2.5	1.5	1			1		21.717	21.717	2	0.0085547	17428	DP1141_4	102.4	77.542			42357000	1377	257	1294	2305;2306	3283;3284	3284		1	9606
SISISVAR	Unmodified	831.48142	0.48141661	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.83	1.34	1	2	1	1	1	16.594	16.594	1;2	1.1231E-108	8611	DP1141_2	188.81	68.323		+	2418600000	1378	65	1295	2307;2308;2309;2310;2311;2312	3285;3286;3287;3288;3289;3290;3291;3292;3293;3294;3295;3296;3297;3298	3292		13	9606
SISLYYTGEK	Unmodified	1159.5761	0.57610486	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	1		1		1		18.196	18.196	2	0.0019296	11959	DP1141_4	125.71	82.849			306190000	1379	123	1296	2313;2314	3299;3300	3300		2	9606
SKAEAESLYQSK	Unmodified	1339.662	0.66195975	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					14.488	14.488	3	0.00039827	5066	DP1141_1	105.95	73.327		+	8537500	1380	65	1297	2315	3301	3301		1	9606
SKAELMEISEDKTK	Oxidation (M)	1623.8026	0.80255233	77	P05455	SSB	Lupus La protein	yes	yes	0	1	2	3	0			1			14.31	14.31	3	0.0063582	4783	DP1141_3	83.823	42.596			13831000	1381	77	1298	2316	3302;3303	3303	56	2	9606
SKEEAEALYHSK	Unmodified	1390.6729	0.67285879	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2	1	1		1			14.061	14.061	3	3.6843999999999997E-19	4362	DP1141_1	146.67	103.25		+	11545000	1382	15	1299	2317;2318	3304;3305	3304		1	9606
SKELTTEIDNNIEQISSYK	Unmodified	2211.0907	0.090672086	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1.67	0.471	1	2				19.205	19.205	3	6.0981E-05	13854	DP1141_2	98.292	53.209		+	872190000	1383	12	1300	2319;2320;2321	3306;3307;3308;3309	3309		4	9606
SKGSYSCEVTHEGSTVTK	Unmodified	1955.8895	0.88946986	17	CON__Q1RMN8			yes	yes	0	0	1	5	0					2	14.157	14.157	3;4	2.7209E-19	4765	DP1141_5	155.24	127.18		+	350250000	1384	17	1301	2322;2323	3310;3311	3310		1	
SKLPKPVQDLIK	Unmodified	1364.8391	0.83913625	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	1.5	0.5	1	1				17.478	17.478	3	6.2097E-43	9876	DP1141_1	155.47	125.27			208050000	1385	89	1302	2324;2325	3312;3313;3314	3312		2	9606
SKVDEAVAVLQAHQAK	Unmodified	1692.9159	0.91588303	102	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	3	0			1			17.403	17.403	3	0.0026672	9681	DP1141_3	97.291	63.987			45418000	1386	102	1303	2326	3315	3315		1	9606
SLASVSYAAVDFFR	Unmodified	1531.7671	0.76709352	408	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				22.867	22.867	2	2.9009E-16	18102	DP1141_2	156.58	64.997			9487400	1387	408	1304	2327	3316	3316		1	9606
SLDLDSIIAEVK	Unmodified	1301.7078	0.70784731	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	1	0	1					22.571	22.571	2	5.281999999999999E-19	17862	DP1141_1	198.25	120.93		+	169180000	1388	65	1305	2328	3317	3317		1	9606
SLEEDQEPIVSHQKPGK	Unmodified	1919.9589	0.95887005	315	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2	0		1				14.82	14.82	3	0.0048214	5756	DP1141_2	108.36	81.102			83897000	1389	315	1306	2329	3318	3318		1	9606
SLEEEKYDMSGAR	Oxidation (M)	1529.6668	0.66678713	150	P31944	CASP14	Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form	yes	yes	0	1	1	5	0					1	14.602	14.602	3	0.034996	5481	DP1141_5	64.224	42.027			4575700	1390	150	1307	2330	3319	3319	147	0	9606
SLEEIYLFSLPIK	Unmodified	1550.8596	0.85959692	109	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		23.646	23.646	2	2.7214E-07	20277	DP1141_4	141.91	82.843			39023000	1391	109	1308	2331	3320;3321	3320		2	9606
SLETVYLER	Unmodified	1108.5764	0.57643921	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		18.595	18.595	2	1.6917E-09	12566	DP1141_4	156.51	82.38			183770000	1392	330	1309	2332	3322	3322		1	9606
SLGNILQAKPTSSPAK	Unmodified	1610.8992	0.89917033	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2.75	0.829		2	1	1		16.919	16.919	2;3	1.7141000000000001E-264	9218	DP1141_2	253.97	126.45			248850000	1393	307	1310	2333;2334;2335;2336	3323;3324;3325;3326	3324		3	9606
SLGPPQGEEDSVPR	Unmodified	1466.7001	0.70013617	263	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.595	16.595	2	0.011907	8415	DP1141_1	86.463	44.114			34546000	1394	263	1311	2337	3327	3327		1	9606
SLGVDMDDKDDAHYAVQAR	Oxidation (M)	2120.9433	0.94329634	420	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	1	1	3	0			1			15.975	15.975	3	0.017513	7273	DP1141_3	72.433	49.827			0	1395	420	1312	2338	3328	3328	356	1	9606
SLLEGEGSSGGGGR	Unmodified	1261.5899	0.58985744	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2	0		1				15.75	15.75	2	1.5398000000000002E-30	7219	DP1141_2	187.99	135.06		+	0	1396	12	1313	2339	3329	3329		1	9606
SLLIDFFR	Unmodified	1009.5597	0.55966693	430	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		23.296	23.296	2	0.037361	19746	DP1141_4	86.794	56.29			17516000	1397	430	1314	2340	3330	3330		1	9606
SLNNQFASFIDK	Unmodified	1382.683	0.68302954	65	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.58	1	1		1	1	20.294	20.294	2	2.7396999999999996E-19	14396	DP1141_2	169.21	132.78		+	610230000	1398	65	1315	2341;2342;2343;2344	3331;3332;3333;3334;3335	3333		5	9606
SLNNQFASFIDKVR	Unmodified	1637.8526	0.85255449	65	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					20.587	20.587	3	0.023056	14758	DP1141_1	122.46	96.494		+	0	1399	65	1316	2345	3336	3336		1	9606
SLPDLGLR	Unmodified	869.49707	0.49706667	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				18.958	18.958	2	0.0003419	12315	DP1141_1	143.37	80.652			254600000	1400	101	1317	2346;2347	3337;3338	3337		2	9606
SLQELFLAHILSPWGAEVK	Unmodified	2137.1572	0.15717593	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		2				24.216	24.216	2;3	3.3345E-73	20222	DP1141_2	226.74	160.93			41193000	1401	89	1318	2348;2349	3339;3340	3340		2	9606
SLQSVAEER	Unmodified	1017.5091	0.50908792	221	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	5	0					1	15.574	15.574	2	5.1053E-06	7033	DP1141_5	163.32	70.124			0	1402	221	1319	2350	3341	3341		1	9606
SLVGLGGTK	Unmodified	830.48617	0.48616764	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					16.584	16.584	2	0.0042933	8388	DP1141_1	136.27	56.329		+	0	1403	15	1320	2351	3342	3342		1	9606
SLVNLGGSK	Unmodified	873.49198	0.4919813	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				16.739	16.739	2	0.012287	8666	DP1141_1	110.41	43.415		+	225840000	1404	65	1321	2352;2353	3343;3344	3343		2	9606
SLVQANPEVAMDSIIHMTQHISPTQR	2 Oxidation (M)	2934.4328	0.43277522	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2.75	1.79	2			1	1	18.338	18.338	3;4	9.7146E-12	11358	DP1141_1	103.03	85.693			552560000	1405	302	1322	2354;2355;2356;2357	3345;3346;3347;3348;3349;3350;3351;3352	3348	262;263	8	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Oxidation (M)	2918.4379	0.43786059	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	3.33	1.7	2			2	2	20.089	20.089	3;4	8.424E-26	13477	DP1141_1	140.2	115.55			285730000	1406	302	1322	2358;2359;2360;2361;2362;2363	3353;3354;3355;3356;3357;3358;3359;3360;3361;3362	3354	262;263	10	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Unmodified	2902.4429	0.44294597	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.5	1			1		21.918	21.918	4	6.1612E-73	16728	DP1141_1	177.22	146.91			84883000	1407	302	1322	2364;2365	3363;3364;3365;3366	3364		4	9606
SLVSKGTLVQTK	Unmodified	1259.7449	0.74490152	111;95	P16403;P16402;Q02539;P16401;P10412	HIST1H1C;HIST1H1D;HIST1H1A;HIST1H1B;HIST1H1E	Histone H1.2;Histone H1.3;Histone H1.1;Histone H1.5;Histone H1.4	no	no	0	0	1	4	0				1		15.333	15.333	3	0.00041145	7495	DP1141_4	116.84	85.947			47089000	1408	111;95	1323	2366	3367	3367		1	9606
SMSVYCTPNKPSR	Oxidation (M)	1541.6966	0.69664747	112	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	1	1	1.5	0.5	1	1				14.073	14.073	3	0.00078551	4455	DP1141_1	105.66	83.786			7525000	1409	112	1324	2367;2368	3368;3369	3368	130	2	9606
SNFSNSADDIK	Unmodified	1196.5309	0.53094558	181	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	5	0					1	15.501	15.501	2	0.00060362	7009	DP1141_5	144.65	103.2			165800000	1410	181	1325	2369	3370;3371	3371		2	9606
SNPGGFGIAPHCLDEGTVR	Unmodified	1982.9269	0.92685842	357	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				2		18.094	18.094	2;3	2.5916E-09	11865	DP1141_4	178.51	141.92			1610299999.9999998	1411	357	1326	2370;2371	3372;3373;3374	3372		3	9606
SNSEVEDVGPTSHNR	Unmodified	1626.7234	0.72339081	306	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	1.5	0.5	1	1				14.101	14.101	3	0.015042	4756	DP1141_2	71.08	41.739			6625400	1412	306	1327	2372;2373	3375;3376	3376		2	9606
SPAGPAATPAQAQAASTPR	Unmodified	1748.8806	0.88056015	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.5	1.12		1	1	1	1	15.203	15.203	2	0	6314	DP1141_2	269.88	236.47			447720000	1413	307	1328	2374;2375;2376;2377	3377;3378;3379;3380;3381;3382;3383	3378		7	9606
SPAQILQWQVLSNTVPAK	Unmodified	1979.084	0.084010986	8	CON__P02668			yes	yes	0	0	0	4	0				1		21.651	21.651	2	3.0317E-22	17202	DP1141_4	175.6	128.9		+	0	1414	8	1329	2378	3384	3384		1	
SPDFTNENPLETR	Unmodified	1518.6951	0.69505079	70	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	0	1					18.658	18.658	2	0.00028926	11724	DP1141_1	128.88	102.76			8655900	1415	70	1330	2379	3385	3385		1	9606
SPEAKPLPGKLPK	Unmodified	1360.8078	0.80783613	183	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	2	2	0		1				14.426	14.426	3	0.012512	5165	DP1141_2	96.334	74.678			18196000	1416	183	1331	2380	3386	3386		0	9606
SPILVATAVAAR	Unmodified	1167.6976	0.69755739	30	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			18.504	18.504	2	0.025146	11412	DP1141_3	83.862	40.738			47397000	1417	30	1332	2381	3387	3387		1	9606
SPLLPAVLEGLAK	Unmodified	1306.786	0.78603805	374	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				22.394	22.394	2	0.0069689	17350	DP1141_2	111.27	64.374			115060000	1418	374	1333	2382	3388	3388		1	9606
SPLQSVVVR	Unmodified	983.57638	0.57637963	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				17.097	17.097	2	0.013052	9425	DP1141_2	116.25	69.256			373550000	1419	482	1334	2383	3389	3389		0	9606
SPLSALAR	Unmodified	813.47085	0.47085192	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				17.396	17.396	2	0.0082808	9720	DP1141_2	130.04	28.348			59655000	1420	410	1335	2384	3390;3391	3390		2	9606
SPPPELTDTATSTK	Unmodified	1443.7093	0.70930387	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				15.824	15.824	2	1.3704E-23	7405	DP1141_2	167.2	113.13			101270000	1421	182	1336	2385	3392	3392		1	9606
SPPPESMDTPTSTR	Oxidation (M)	1517.6668	0.66678713	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2.5	0.5		1	1			13.805	13.805	2	0.0029061	4238	DP1141_2	122.18	99.034			20714000	1422	182	1337	2386;2387	3393;3394;3395;3396;3397	3394	170	5	9606
SPPPESVDTPTSTK	Unmodified	1441.6937	0.69365381	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3.5	1.12		1	1	1	1	14.564	14.564	2	2.8795E-43	5501	DP1141_2	181.68	146.41			106880000	1423	182	1338	2388;2389;2390;2391	3398;3399;3400;3401;3402;3403;3404;3405	3398		8	9606
SPPSVTLFPPSTEELNGNK	Unmodified	2013.0055	0.0054858935	17	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	19.881	19.881	2	1.2512E-145	14111	DP1141_5	214.42	140.03		+	38552000	1424	17	1339	2392	3406	3406		1	
SPQPDPVDTPASTK	Unmodified	1438.694	0.69398816	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			14.914	14.914	2	2.1336E-105	5985	DP1141_2	212.68	148.86			83381000	1425	182	1340	2393;2394	3407;3408;3409	3407		3	9606
SPQPDPVGTPTIFKPQSK	Unmodified	1923.0102	0.010177341	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				17.597	17.597	3	2.2191E-05	10265	DP1141_2	112.16	95.081			70444000	1426	182	1341	2395	3410	3410		1	9606
SPQPDPVKTPTSSK	Unmodified	1467.7569	0.75692277	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	0.816		1	1	1		13.423	13.423	3	4.1052E-13	4005	DP1141_2	156.2	135.39			26241000	1427	182	1342	2396;2397;2398	3411;3412;3413;3414;3415;3416	3412		6	9606
SPQVKPASTMGMGPLGK	2 Oxidation (M)	1716.8539	0.85387639	307	Q13428	TCOF1	Treacle protein	yes	yes	0	2	1	3	1		1		1		14.594	14.594	3	1.9801E-08	5512	DP1141_2	137.91	108.92			150860000	1428	307	1343	2399;2400	3417;3418	3417	273;274	2	9606
SPQVKPASTMGMGPLGK	Oxidation (M)	1700.859	0.85896177	307	Q13428	TCOF1	Treacle protein	yes	yes	0	1	1	2	0		1				15.758	15.758	3	0.019753	7364	DP1141_2	74.783	54.604			30364000	1429	307	1343	2401	3419	3419	273;274	1	9606
SPSDEYKDNLHQVSK	Unmodified	1745.822	0.82204222	470	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	4.5	0.5				1	1	14.748	14.748	3	2.3693E-29	6478	DP1141_4	206.66	188.32			125520000	1430	470	1344	2402;2403	3420;3421;3422	3420		3	9606
SPSELFAQHIVTIVHHVK	Unmodified	2041.1109	0.11089444	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		2				19.299	19.299	3;4	2.2987E-05	12955	DP1141_2	116.87	80.287			340590000	1431	482	1345	2404;2405	3423;3424;3425;3426	3425		4	9606
SPYQEFTDHLVK	Unmodified	1462.7092	0.70924429	109	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				2		18.795	18.795	2;3	7.8112E-13	12960	DP1141_4	158.34	120.74			293320000	1432	109	1346	2406;2407	3427;3428;3429	3428		3	9606
SQAQSYIAHNFK	Unmodified	1392.6786	0.67861287	376	Q8WVZ9	KBTBD7	Kelch repeat and BTB domain-containing protein 7	yes	yes	0	0	0	3	0			1			16.191	16.191	2	0.014487	7624	DP1141_3	99.013	43.292			0	1433	376	1347	2408	3430	3430		1	9606
SQEEPKDTFEHDPSESIDEFNK	Unmodified	2607.1249	0.12488534	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		1				17.597	17.597	3	0.024708	10406	DP1141_2	58.366	35.037			75027000	1434	456	1348	2409	3431	3431		1	9606
SQGPLEVAEAAVSQSSGLAAK	Unmodified	1999.0222	0.02219859	459	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	0	4	0				1		21.484	21.484	2	0.014233	16957	DP1141_4	112.57	75.047			0	1435	459	1349	2410	3432	3432		1	9606
SQPDPVDTPTSSKPQSK	Unmodified	1797.8745	0.87447172	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.86	1.25	1	2	2	1	1	13.705	13.705	2;3	1.3148E-105	4079	DP1141_2	251.05	211.27			111510000	1436	182	1350	2411;2412;2413;2414;2415;2416;2417	3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444	3436		12	9606
SQSFFAAAR	Unmodified	983.48248	0.48247924	35	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	0	2	0		1				17.097	17.097	2	0.027213	10295	DP1141_2	96.492	96.492			464200000	1437	35	1351	2418	3445	3445		1	9606
SQVFSTAADGQTQVEIK	Unmodified	1807.8952	0.89520716	168	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			18.004	18.004	2	5.3139E-08	10627	DP1141_3	139.78	90.832			31036000	1438	168	1352	2419	3446	3446		1	9606
SQYEQLAEQNR	Unmodified	1364.6321	0.6320566	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	2	1				1	15.936	15.936	2	6.421400000000001E-35	7389	DP1141_1	183.43	139.78		+	76070000	1439	12	1353	2420;2421	3447;3448;3449	3447		3	9606
SQYEQLAEQNRK	Unmodified	1492.727	0.72701962	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	1.5	2	1	2	1	2	14.83	14.83	2;3	0	5502	DP1141_1	265.67	210.58		+	1669399999.9999998	1440	12	1354	2422;2423;2424;2425;2426;2427;2428;2429	3450;3451;3452;3453;3454;3455;3456;3457;3458;3459;3460;3461	3450		11	9606
SREIFLSQPILLELEAPLK	Unmodified	2195.2566	0.25655562	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	4.5	0.5				1	1	22.994	22.994	3	9.7726E-48	18666	DP1141_5	172.99	144.93			21859000	1441	164;225;226	1355	2430;2431	3462;3463;3464;3465	3464		4	9606
SRPLANGHPILNNNHR	Unmodified	1808.9506	0.95064582	390	Q96G23	CERS2	Ceramide synthase 2	yes	yes	0	0	1	1	0	1					14.032	14.032	4	0.011829	4272	DP1141_1	48.405	30.488			1033100	1442	390	1356	2432	3466	3466		1	9606
SSATSGDIWPGLSAYDNSPR	Unmodified	2079.9498	0.94976193	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		1				20.701	20.701	2	6.130400000000001E-42	15061	DP1141_2	189.09	146.31			19785000	1443	456	1357	2433	3467	3467		1	9606
SSEPVVIMK	Unmodified	988.52632	0.52631789	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.617	16.617	2	0.025644	8695	DP1141_2	83.753	83.753			33422000	1444	182	1358	2434	3468	3468		1	9606
SSGEIVYCGQVFEK	Unmodified	1601.7396	0.73955814	275	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	18.614	18.614	2	4.1644E-05	12090	DP1141_5	137.4	89.528			91853000	1445	275	1359	2435	3469;3470	3470		2	9606
SSGPTSLFAVTVAPPGAR	Unmodified	1713.905	0.90498399	272	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0.816	1	1	1			20.513	20.513	2	2.9173E-12	14758	DP1141_2	184.96	143.26			180590000	1446	272	1360	2436;2437;2438	3471;3472;3473	3472		3	9606
SSGPYGGGGQYFAKPR	Unmodified	1627.7743	0.77430417	88	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		16.363	16.363	2;3	1.0085E-133	9078	DP1141_4	222.2	190.35			468920000	1447	88	1361	2439;2440	3474;3475;3476;3477;3478	3478		5	9606
SSGSPYGGGYGSGGGSGGYGSR	Unmodified	1909.7827	0.7826966	203	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		16.063	16.063	2	2.5151E-261	8547	DP1141_4	241.39	192.39			146340000	1448	203	1362	2441	3479	3479		0	9606
SSMNWMMSMHIREGCLFITR	2 Oxidation (M)	2518.1048	0.10478126	338	Q3ZCU0		Putative uncharacterized protein FLJ37770	yes	yes	0	2	1	4	0				1		21.998	21.998	2	0.025964	17772	DP1141_4	46.964	28.949			19706000	1449	338	1363	2442	3480	3480	296;297;298	1	9606
SSMSGLHLVK	Unmodified	1057.559	0.559015	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.326	16.326	2	0.0039171	7986	DP1141_1	141.52	105.9			568030000	1450	302	1364	2443	3481	3481		1	9606
SSPELEDTATSSK	Unmodified	1350.6151	0.61506914	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.82	14.82	2	0.0015666	5868	DP1141_2	124.67	90.282			58119000	1451	182	1365	2444	3482	3482		1	9606
SSRKLSGPK	Acetyl (Protein N-term)	1000.5665	0.56654322	414	Q9BT40	INPP5K	Inositol polyphosphate 5-phosphatase K	yes	yes	1	0	2	4	0				1		21.397	21.397	2	0.0074244	16166	DP1141_4	81.296	14.497			33780000	1452	414	1366	2445	3483	3483		1	9606
SSSPGKPQAVSSLNSSHSR	Unmodified	1911.9399	0.93986594	465	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	1	2.5	0.5		1	1			13.472	13.472	3	0.0012808	3797	DP1141_2	89.557	68.729			1831200	1453	465	1367	2446;2447	3484;3485	3484		2	9606
SSSSSAASDTATSTQRPLR	Unmodified	1908.9137	0.91371077	402	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	1	1	0	1					14.025	14.025	3	0.0042436	4367	DP1141_1	73.296	39.996			2538300	1454	402	1368	2448	3486	3486		1	9606
SSTATHPPGPAVQLNK	Unmodified	1603.8318	0.83181904	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.22	1.31	1	2	2	2	2	15.028	15.028	2;3	2.7005E-15	5827	DP1141_2	151.13	115.42			7316999999.999999	1455	316	1369	2449;2450;2451;2452;2453;2454;2455;2456;2457	3487;3488;3489;3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504	3490		18	9606
STAYEDYYYHPPPR	Unmodified	1757.7686	0.76855009	41	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	3	0			1			17.403	17.403	3	0.0042483	9600	DP1141_3	101.72	78.238			17093000	1456	41	1370	2458	3505	3505		1	9606
STCIYGGAPK	Unmodified	1052.4961	0.4960804	116;383	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	3	0			1			15.307	15.307	2	0.033366	6148	DP1141_3	93.429	60.819			55164000	1457	116;383	1371	2459	3506	3506		0	9606
STELLIR	Unmodified	830.48617	0.48616764	259;345	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	0	5	0					2	17.212	17.212	1;2	4.5948E-16	9928	DP1141_5	164.78	63.447			23990000000	1458	259;345	1372	2460;2461	3507;3508;3509	3507		3	9606
STGEAFVQFASK	Unmodified	1270.6194	0.61936665	148	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	5	0					1	18.614	18.614	2	0.037172	12127	DP1141_5	92.611	45.72			32908000	1459	148	1373	2462	3510	3510		0	9606
STITSREIQTAVR	Unmodified	1460.7947	0.79470526	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	1	5	0					1	16.035	16.035	3	0.025874	7793	DP1141_5	89.189	55.139			0	1460	47;133;216	1374	2463	3511	3511		1	9606
STITSREIQTAVRLLLPGELAK	Unmodified	2395.3799	0.37985866	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	2	5	0					1	22.433	22.433	3	0.0049409	17829	DP1141_5	66.702	11.249			54496000	1461	47;133;216	1375	2464	3512	3512		0	9606
STLVGHDTFTK	Unmodified	1204.6088	0.60880197	23	CON__Streptavidin			yes	yes	0	0	0	4.29	1.39	1			1	5	15.687	15.687	2;3	8.722799999999999E-92	7581	DP1141_4	208.11	141.54		+	26760000000	1462	23	1376	2465;2466;2467;2468;2469;2470;2471	3513;3514;3515;3516;3517;3518;3519;3520;3521;3522	3515		9	
STNENANTPAAR	Acetyl (Protein N-term)	1286.5851	0.58510641	205	P52292	KPNA2	Importin subunit alpha-1	yes	yes	1	0	0	3	0			1			14.125	14.125	2	4.4840000000000003E-141	4550	DP1141_3	218.6	150.38			9239200	1463	205	1377	2472	3523	3523		0	9606
STPKEETVNDPEEAGHR	Unmodified	1894.8657	0.86569795	29	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	1	3	0			2			13.421	13.421	3;4	0.00055822	3149	DP1141_3	82.121	57.834			8334100	1464	29	1378	2473;2474	3524;3525;3526	3525		3	9606
STSESFIQHIVSLVHHVK	Unmodified	2047.0851	0.085073618	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		2				21.301	21.301	3;4	0.0010922	15858	DP1141_2	88.551	88.551			148460000	1465	456	1379	2475;2476	3527;3528;3529	3528		3	9606
SVAHGQAPEMPLVK	Oxidation (M)	1478.7551	0.75514863	336	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	0	5	0					1	14.386	14.386	3	0.0048108	5356	DP1141_5	96.135	57.462			18347000	1466	336	1380	2477	3530	3530	295	1	9606
SVEEQLAQLR	Unmodified	1171.6197	0.619701	20	CON__Q61782			yes	yes	0	0	0	2	0		1				21.567	21.567	2	0.01125	16222	DP1141_2	101.28	2.7609		+	0	1467	20	1381	2478	3531	3531		1	
SVELEEALPVTTAEGMAK	Acetyl (Protein N-term)	1915.9449	0.94485947	380	Q92522	H1FX	Histone H1x	yes	yes	1	0	0	4	0				1		22.471	22.471	2	0.028744	18416	DP1141_4	68.171	14.028			0	1468	380	1382	2479	3532	3532		1	9606
SVELEEALPVTTAEGMAK	Acetyl (Protein N-term);Oxidation (M)	1931.9398	0.93977409	380	Q92522	H1FX	Histone H1x	yes	yes	1	1	0	4	0				1		21.597	21.597	2	0.0022273	17005	DP1141_4	91.202	47.014			40270000	1469	380	1382	2480	3533	3533	320	0	9606
SVFALTNGIYPHK	Unmodified	1445.7667	0.76669959	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	5	0					1	19.211	19.211	3	0.024359	13167	DP1141_5	62.924	39.896			5187600	1470	276	1383	2481	3534	3534		1	9606
SVGELPSTVESLQK	Unmodified	1472.7722	0.77223848	286	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.504	18.504	2	0.0031203	11245	DP1141_3	113.63	48.976			21227000	1471	286	1384	2482	3535	3535		0	9606
SVHSSVPLLNSK	Unmodified	1266.6932	0.6932003	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				16.127	16.127	2;3	4.2237E-64	7465	DP1141_1	223.87	173.84			504660000	1472	302	1385	2483;2484;2485	3536;3537;3538;3539;3540;3541	3537		6	9606
SVHSSVPLLNSKDPIDR	Unmodified	1862.985	0.98502522	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.83	0.898	3	1	2			17.04	17.04	2;3;4	0	9135	DP1141_1	272.77	239.22			1652699999.9999998	1473	302	1386	2486;2487;2488;2489;2490;2491	3542;3543;3544;3545;3546;3547;3548;3549;3550;3551;3552;3553;3554	3550		12	9606
SVTCTYSPALNK	Unmodified	1339.6442	0.6442012	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			16.212	16.212	2	1.0826999999999999E-186	7708	DP1141_3	238.51	168.7			392870000	1474	67	1387	2492	3555;3556	3556		2	9606
SVTEQGAELSNEER	Unmodified	1547.7063	0.70634376	253	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4	0				1		15.627	15.627	2	1.4962E-127	7833	DP1141_4	206.36	141.05			24032000	1475	253	1388	2493	3557	3557		0	9606
SVTNEDVTQEELGGAK	Unmodified	1675.7901	0.79007339	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.67	16.67	2	0.0016509	8584	DP1141_3	120.59	78.25			131640000	1476	73	1389	2494	3558	3558		1	9606
SVVEFLQGYIGVPHGGFPEPFR	Unmodified	2431.2325	0.23246614	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.471	1	2				23.357	23.357	2;3	1.4328E-06	18927	DP1141_2	98.188	79.307			51094000	1477	101	1390	2495;2496;2497	3559;3560;3561;3562;3563	3561		5	9606
SVVTVIDVFYK	Unmodified	1268.7016	0.70163972	19	CON__Q5D862;Q5D862	FLG2	Filaggrin-2	yes	no	0	0	0	5	0					1	22.016	22.016	2	0.00986	17261	DP1141_5	109.44	65.788		+	0	1478	19	1391	2498	3564	3564		1	9606
SYCAEIAHNVSSK	Unmodified	1464.6667	0.66672755	249	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					1	15.802	15.802	2	0.0024279	7328	DP1141_5	127.52	93.598			48500000	1479	249	1392	2499	3565;3566	3565		2	9606
SYELPDGQVITIGNER	Unmodified	1789.8846	0.88464248	254	P63261;P60709;Q6S8J3;A5A3E0;Q9BYX7;P63267;P68133;P68032;P62736;Q562R1	ACTG1;ACTB;POTEE;POTEF;POTEKP;ACTG2;ACTA1;ACTC1;ACTA2;ACTBL2	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2	yes	no	0	0	0	2	0		1				20.688	20.688	2	3.1994E-11	14937	DP1141_2	136.01	101.32			7354100	1480	254	1393	2500	3567	3567		0	9606
SYLNMDAIMEAIKK	2 Oxidation (M)	1657.8055	0.80552922	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	1	1	0	1					18.158	18.158	3	0.011929	11123	DP1141_1	69.352	39.245			28207000	1481	72	1394	2501	3568	3568	51;52	0	9606
TAAENDFVTLK	Unmodified	1207.6085	0.60846762	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					17.996	17.996	2	0.00058761	10723	DP1141_1	144.77	98.306		+	22887000	1482	15	1395	2502	3569	3569		1	9606
TAAENDFVTLKK	Unmodified	1335.7034	0.70343063	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	1	0	1					16.326	16.326	3	0.00029768	7946	DP1141_1	122.55	85.869		+	113700000	1483	15	1396	2503	3570	3570		1	9606
TAQIMFQAYGDK	Oxidation (M)	1387.6442	0.6442012	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.859	17.859	2	0.00081563	10515	DP1141_1	136.81	115.81			166330000	1484	302	1397	2504	3571;3572;3573	3572	264	3	9606
TAVCDIPPR	Unmodified	1027.5121	0.51206481	81;258;312	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q9BVA1;Q13885	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2B chain;Tubulin beta-2A chain	no	no	0	0	0	2.83	1.46	2		2	1	1	15.788	15.788	2	0.001009	6039	DP1141_3	145.16	69.966			787520000	1485	81;258;312	1398	2505;2506;2507;2508;2509;2510	3574;3575;3576;3577;3578;3579;3580;3581;3582;3583;3584;3585	3576		12	9606
TCPVQLWVDSTPPPGTR	Unmodified	1909.9356	0.93563219	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.33	0.471			2	1		20.304	20.304	2;3	0	14090	DP1141_3	261.38	229.32			162050000	1486	67	1399	2511;2512;2513	3586;3587;3588;3589;3590	3587		5	9606
TCVFEKENDPSVMR	Oxidation (M)	1726.7655	0.76545532	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					15.644	15.644	3	0.023469	6838	DP1141_1	68.168	42.437			320960000	1487	302	1400	2514	3591	3591	265	0	9606
TDCDIEDDRLAAMFR	Oxidation (M)	1842.7876	0.78764732	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					18.651	18.651	3	0.035055	11816	DP1141_1	68.171	34.384			149090000	1488	302	1401	2515	3592	3592	266	1	9606
TDCDIEDDRLAAMFR	Unmodified	1826.7927	0.7927327	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					20.236	20.236	3	0.023931	14259	DP1141_1	104.59	69.475			353200000	1489	302	1401	2516	3593	3593		1	9606
TDCNHIFLNFVPTVIMDPSK	Oxidation (M)	2363.129	0.12898862	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.837	21.837	3	6.924E-05	16742	DP1141_1	96.234	69.997			144380000	1490	302	1402	2517	3594;3595	3594	267	2	9606
TDEKVDESGPPAPSKPR	Unmodified	1808.8905	0.89045614	337	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	2	2	0		2				13.602	13.602	3;4	0.025421	4016	DP1141_2	92.236	58.555			6885600	1491	337	1403	2518;2519	3596;3597	3597		2	9606
TDFGIFR	Unmodified	854.42865	0.42865276	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	19.836	19.836	2	0.0027291	13733	DP1141_1	118.06	90.74			442120000	1492	436	1404	2520;2521;2522;2523	3598;3599;3600;3601;3602	3598		5	9606
TDKSILVSPTGPSR	Unmodified	1456.7886	0.78855725	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	4	1.41		1			2	15.944	15.944	2;3	0.017206	7694	DP1141_5	68.972	9.7247			70767000	1493	316	1405	2524;2525;2526	3603;3604;3605	3605		2	9606
TDYNASVSVPDSSGPER	Unmodified	1779.7911	0.79113602	223	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.5	0.5			1	1		16.931	16.931	2	3.3191999999999997E-124	9968	DP1141_4	274.59	224.12			71729000	1494	223	1406	2527;2528	3606;3607	3607		1	9606
TEADAEKTFEEK	Unmodified	1396.6358	0.63580458	123	P19338	NCL	Nucleolin	yes	yes	0	0	1	1.67	0.943	2		1			15.031	15.031	2;3	1.7938E-117	5773	DP1141_3	248.98	223.07			289340000	1495	123	1407	2529;2530;2531	3608;3609;3610;3611	3610		4	9606
TEDFIIDTLELR	Unmodified	1463.7508	0.75077476	273	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				22.77	22.77	2	0.022375	18012	DP1141_2	99.788	60.983			5016800	1496	273	1408	2532	3612	3612		1	9606
TEDSLMPEEEFLRR	Oxidation (M)	1766.8145	0.814514	331	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	1	2	0		1				18.829	18.829	3	0.027584	12046	DP1141_2	54.65	30.716			6000600	1497	331	1409	2533	3613	3613	294	1	9606
TEELEEESFPER	Unmodified	1493.6522	0.65218292	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				17.822	17.822	2	2.7791000000000003E-115	10587	DP1141_2	236.32	177.16			0	1498	482	1410	2534	3614	3614		1	9606
TEELNKEVASNSELVQSSR	Unmodified	2119.0393	0.039305217	10	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	1	1	0	1					16.892	16.892	3	0.0043647	8956	DP1141_1	66.636	46.766		+	19314000	1499	10	1411	2535	3615	3615		1	9606
TEEVDEEKKMVEEAK	Oxidation (M)	1808.835	0.83497467	467	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	1	2	2	0		1				14.426	14.426	3	0.0069442	5227	DP1141_2	93.348	69.506			11120000	1500	467	1412	2536	3616	3616	378	1	9606
TEGETEVKKDEAGENYSK	Unmodified	2012.9175	0.91745875	401	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	0	2	4	0				1		13.134	13.134	3	0.031817	3954	DP1141_4	70.784	59.825			981320	1501	401	1413	2537	3617	3617		1	9606
TEIIILATR	Unmodified	1028.623	0.62299547	132	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		19.196	19.196	2	0.0243	13718	DP1141_4	87.476	59.652			188610000	1502	132	1414	2538	3618	3618		1	9606
TFAPEEISAMVLTK	Oxidation (M)	1551.7854	0.7854457	97	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	1	0	3	0			1			20.156	20.156	2	0.019228	14000	DP1141_3	76.165	50.273			15921000	1503	97	1415	2539	3619	3619	107	1	9606
TFEDFVR	Unmodified	912.43413	0.43413207	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.762	18.762	1;2	1.7279E-84	12024	DP1141_1	208.61	143.83			450360000	1504	302	1416	2540;2541	3620;3621;3622	3622		3	9606
TFQVLGNLYSEGDCTYLK	Unmodified	2106.9932	0.99320665	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			21.622	21.622	2	7.7884E-09	16154	DP1141_3	186.29	154.57			106220000	1505	399	1417	2542;2543	3623;3624;3625;3626;3627	3625		5	9606
TFSFAIPLIER	Unmodified	1292.7129	0.71287311	408	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				22.594	22.594	2	0.00064836	17768	DP1141_2	154.01	123.84			14494000	1506	408	1418	2544	3628	3628		1	9606
TFTDCFNCLPIAAIVDEK	Unmodified	2112.986	0.98601278	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.2	1.33	1		2	1	1	23.219	23.219	2;3	7.7174E-59	18969	DP1141_5	234.83	189.17			617310000	1507	164;225;226	1419	2545;2546;2547;2548;2549	3629;3630;3631;3632;3633;3634;3635;3636;3637;3638;3639	3639		11	9606
TFYNQAIMSSK	Oxidation (M)	1304.6071	0.60708741	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			16.88	16.88	2	0.020009	8929	DP1141_1	103.31	103.31			986240000	1508	436	1420	2550;2551	3640;3641	3640	362	1	9606
TFYNQAIMSSK	Unmodified	1288.6122	0.61217279	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	2	1				1	18.061	18.061	2	0.030267	10815	DP1141_1	101.38	38.835			20191000	1509	436	1420	2552;2553	3642;3643	3642		0	9606
TGISDVFAK	Unmodified	936.49165	0.49164694	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				18.598	18.598	2	0.0096417	11828	DP1141_2	110.12	53.573			100330000	1510	123	1421	2554	3644	3644		1	9606
TGKPLPFGTLGVHK	Unmodified	1450.8296	0.8296342	195	P49916	LIG3	DNA ligase 3	yes	yes	0	0	1	2	0		1				16.907	16.907	3	0.037931	9235	DP1141_2	60.901	41.934			10577000	1511	195	1422	2555	3645	3645		1	9606
TGLAVTVGQAK	Unmodified	1043.5975	0.597509	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	0.5		1	1			16.264	16.264	2	1.1701E-12	7991	DP1141_2	150.27	85.021			44128000	1512	307	1423	2556;2557	3646;3647	3646		0	9606
TGPAAAQVQVGK	Unmodified	1125.6142	0.6142217	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	1		1		1		14.711	14.711	2	2.135E-06	5544	DP1141_2	148.94	110.78			156240000	1513	307	1424	2558;2559	3648;3649	3648		1	9606
TGQPMIHIYLDKETGKPK	Oxidation (M)	2071.0772	0.077211049	274	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	1	2	3	0			1			16.103	16.103	4	0.024485	7418	DP1141_3	51.76	24.505			17215000	1514	274	1425	2560	3650	3650	230	1	9606
TGQPMINLYTDR	Oxidation (M)	1423.6766	0.67656396	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	0	3	0			1			17.904	17.904	2	0.03743	10459	DP1141_3	80.706	55.147			66992000	1515	161	1426	2561	3651	3651	152	1	9606
TGQPMINLYTDRETGK	Oxidation (M)	1838.8833	0.88326227	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3	0			1			16.77	16.77	3	0.00018915	8665	DP1141_3	134.06	103.49			136350000	1516	161	1427	2562	3652	3652	152	1	9606
TGQPMINLYTDRETGK	Unmodified	1822.8883	0.88834765	161	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3	0			1			17.704	17.704	3	0.026923	10267	DP1141_3	68.413	44.302			34529000	1517	161	1427	2563	3653	3653		1	9606
TGSSSLPGRPSVIPDHSKK	Unmodified	1949.033	0.033038048	462	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	2	1	0	1					14.795	14.795	3	0.019432	5435	DP1141_1	65.477	23.735			2915400	1518	462	1428	2564	3654	3654		0	9606
TGTAEMSSILEER	Oxidation (M)	1438.661	0.66097347	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	5	0					1	16.625	16.625	2	0.0090681	8779	DP1141_5	136.49	96.864			0	1519	137	1429	2565	3655	3655	144	1	9606
TGTTGQSGAESGTTEPSAR	Unmodified	1793.8028	0.80276334	355	Q7Z5P9	MUC19	Mucin-19	yes	yes	0	0	0	2.8	1.47	1	2		1	1	20.112	20.112	2;3	2.8675E-05	14096	DP1141_1	118.52	45.986			2247400000	1520	355	1430	2566;2567;2568;2569;2570	3656;3657;3658;3659;3660;3661;3662;3663	3657		8	9606
TGTVSVVCLVNDFYPK	Unmodified	1797.8971	0.89712142	16	CON__Q05B55			yes	yes	0	0	0	5	0					1	22.933	22.933	2	3.8983E-22	18640	DP1141_5	160.86	105.6		+	13736000	1521	16	1431	2571	3664;3665	3664		2	
TGVHHYSGNNIELGTACGK	Unmodified	2013.9327	0.93267208	247	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					2	15.205	15.205	2;4	0	6430	DP1141_5	246.75	203.25			78519000	1522	247	1432	2572;2573	3666;3667;3668;3669	3668		4	9606
TGVVPQLVK	Unmodified	939.57532	0.57531699	205	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			17.527	17.527	2	0.014764	9802	DP1141_3	120.62	69.286			0	1523	205	1433	2574	3670	3670		1	9606
THINIVVIGHVDSGK	Unmodified	1587.8733	0.87328993	256	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	1	0	2					27.024	27.024	3	0.017552	9382	DP1141_1	82.942	55.687			53706000	1524	256	1434	2575;2576	3671;3672;3673	3673		2	9606
THLASDDLYK	Unmodified	1161.5666	0.5666028	430	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		15.451	15.451	2	0.033526	7551	DP1141_4	93.598	21.72			7633900	1525	430	1435	2577	3674	3674		1	9606
THNLEPYFESFINNLR	Unmodified	1992.9694	0.96937516	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.17	1.07	2	2	1	1		22.734	22.734	2;3	5.595E-157	17881	DP1141_2	225.72	188.77		+	479140000	1526	65	1436	2578;2579;2580;2581;2582;2583	3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688	3683		14	9606
THNLEPYFESFINNLRR	Unmodified	2149.0705	0.070486187	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1.33	0.471	2	1				21.94	21.94	3;4	1.0074E-05	16828	DP1141_1	130.47	64.221		+	128710000	1527	65	1437	2584;2585;2586	3689;3690;3691;3692;3693;3694;3695	3690		7	9606
TIAECLADELINAAK	Unmodified	1630.8236	0.82362212	187	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	23.432	23.432	2	5.4904999999999995E-157	19364	DP1141_5	227.36	181.77			67547000	1528	187	1438	2587	3696;3697	3696		2	9606
TICSHVQNMIK	Oxidation (M)	1345.6482	0.64824072	154	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	1	0	5	0					2	14.753	14.753	2;3	0.0015443	5834	DP1141_5	117.53	73.875			73803000	1529	154	1439	2588;2589	3698;3699	3699	150	2	9606
TIGGGDDSFNTFFSETGAGK	Unmodified	2006.8858	0.88576469	257;409	P68363;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA1C;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	2.67	1.25	1		1	1		21.246	21.246	2	0	15621	DP1141_3	297.16	276.49			195050000	1530	257;409	1440	2590;2591;2592	3700;3701;3702;3703;3704	3701		4	9606
TIQFVDWCPTGFK	Unmodified	1597.7599	0.75989966	409	Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65;Q6PEY2	TUBA1C;TUBA1A;TUBA8;TUBA3E	Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain	yes	no	0	0	0	3	0			1			21.807	21.807	2	0.0057988	16710	DP1141_3	121.08	74.232			158480000	1531	409	1441	2593	3705;3706	3706		2	9606
TIQVENSHLILTGAGALNK	Unmodified	1978.0847	0.084739268	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.858	18.858	3	2.3551E-05	12176	DP1141_1	101.54	76.638			792040000	1532	302	1442	2594	3707	3707		1	9606
TITLEVEPSDTIENVK	Unmodified	1786.92	0.92002493	92	P62987;P62979;P0CG47;P0CG48	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	5	0					1	19.493	19.493	2	8.4811E-05	13376	DP1141_5	117.86	81.435			331780000	1533	92	1443	2595	3708	3708		0	9606
TKDHTLVQTIAR	Unmodified	1381.7678	0.76776223	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1.22	1	2	2	2	1	15.118	15.118	2;3	8.0394E-273	6142	DP1141_2	259.18	214.16			6535999999.999999	1534	316	1444	2596;2597;2598;2599;2600;2601;2602;2603	3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727	3711		19	9606
TKEAVLLLK	Unmodified	1013.6485	0.64848194	163	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			16.613	16.613	2	2.9419E-36	8320	DP1141_3	172.23	84.757			43349000	1535	163	1445	2604	3728	3728		0	9606
TKTPGPGAQSALR	Unmodified	1282.6993	0.69934831	231	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	13.851	13.851	3	0.00014266	4185	DP1141_5	122.64	67.855			4192400	1536	231	1446	2605	3729;3730	3730		2	9606
TKVGDGDLSAEEIPENEVSLR	Unmodified	2257.1074	0.10738478	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		2				18.498	18.498	2;3	1.3598E-07	11681	DP1141_2	103.71	73.28			139860000	1537	316	1447	2606;2607	3731;3732;3733	3731		3	9606
TLAVSGLGVVGR	Unmodified	1127.6663	0.66625727	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	0	1					18.844	18.844	2	1.4216E-09	12135	DP1141_1	137.95	86.887			139950000	1538	100	1448	2608	3734	3734		0	9606
TLETVPLER	Unmodified	1056.5815	0.58152458	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.295	17.295	2	4.9726E-06	10474	DP1141_4	154.12	95.336			123210000	1539	128	1449	2609	3735	3735		1	9606
TLGDFAAEYAK	Unmodified	1184.5714	0.57135383	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	3	1		1		1		19.098	19.098	2	0.00096703	12746	DP1141_2	119.68	90.531			236350000	1540	89	1450	2610;2611	3736;3737	3736		2	9606
TLGILGLGR	Unmodified	898.56	0.56000128	40	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	2	0		1				17.396	17.396	2	0.026381	9971	DP1141_2	95.352	28.183			40876000	1541	40	1451	2612	3738	3738		1	9606
TLGSSDTQQLR	Unmodified	1204.6048	0.60477922	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	5	0					1	15.407	15.407	2	0.028523	6422	DP1141_5	99.815	58.367			23160000000	1542	412	1452	2613	3739;3740	3740		2	9606
TLLDIDNTR	Unmodified	1059.556	0.55603811	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0.816	1	1	1			18.32	18.32	2	8.1848E-77	11435	DP1141_2	197.3	110.12		+	1250500000	1543	14	1453	2614;2615;2616	3741;3742;3743	3742		2	9606
TLLEGEESR	Unmodified	1032.5088	0.50875357	65	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.58	1	1		1	1	15.81	15.81	2	2.3779E-11	7287	DP1141_5	112.41	70.124		+	3053299999.9999995	1544	65	1454	2617;2618;2619;2620	3744;3745;3746;3747;3748;3749	3749		5	9606
TLMNLGGLAVAR	Oxidation (M)	1230.6754	0.67544174	165	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	18.677	18.677	2	0.034471	12125	DP1141_5	81.525	51.021			33182000	1545	165	1455	2621	3750	3750	155	1	9606
TLNDMRQEYEQLIAK	Oxidation (M)	1866.9146	0.9145624	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2	0		1				18.399	18.399	2	0.013484	11457	DP1141_2	80.469	37.999		+	61520000	1546	14	1456	2622	3751	3751	14	1	9606
TLRDPSLPLLELQDIMTSVSGR	Oxidation (M)	2456.2945	0.29447405	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	2.25	1.64	2	1			1	22.155	22.155	2;3	3.6259E-55	17015	DP1141_1	172.3	146.68			457150000	1547	302	1457	2623;2624;2625;2626	3752;3753;3754;3755;3756;3757;3758;3759	3752	241	8	9606
TLRDPSLPLLELQDIMTSVSGR	Unmodified	2440.2996	0.29955942	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					24.293	24.293	3	4.2042999999999996E-138	20223	DP1141_1	211.68	165.86			16189000	1548	302	1457	2627	3760;3761;3762	3761		3	9606
TLSDDLDEAAKEFQEK	Unmodified	1837.8582	0.85815295	424	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	1	0	1					20.936	20.936	3	1.7923E-16	15210	DP1141_1	141.65	112.87			8720300	1549	424	1458	2628	3763	3763		0	9606
TLSDYNIQK	Unmodified	1080.5451	0.54513908	92	P62987;P62979;P0CG47;P0CG48;A0A2R8Y422	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	1.63	1		1		1	16.296	16.296	2	0.0013308	7908	DP1141_1	143.89	87.166			1082100000	1550	92	1459	2629;2630;2631	3764;3765;3766	3764		3	9606
TLSYLLPAIVHINHQPFLER	Unmodified	2360.3005	0.30048612	116	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	4	0				1		21.461	21.461	3	2.488E-09	16884	DP1141_4	130.4	104.47			3582600	1551	116	1460	2632	3767	3767		1	9606
TLTAVHDAILEDLVFPSEIVGK	Unmodified	2366.2733	0.2733279	224	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	23.284	23.284	3	4.0201E-56	19136	DP1141_5	174.72	155.18			31888000	1552	224	1461	2633	3768	3768		1	9606
TLYGFGG	Unmodified	713.33844	0.33844077	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	20.285	20.285	1	6.368E-06	15111	DP1141_5	143.88	143.88			8730100000	1553	242	1462	2634	3769	3769		1	9606
TLYVGNLSR	Unmodified	1021.5556	0.55564418	147	Q01085;P31483	TIAL1;TIA1	Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40	yes	no	0	0	0	4	0				1		17.466	17.466	2	0.014202	10824	DP1141_4	116.05	74.398			0	1554	147	1463	2635	3770	3770		1	9606
TNAENEFVTIK	Unmodified	1264.6299	0.62993134	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	5	0					1	17.795	17.795	2	0.0081669	10723	DP1141_5	104.22	65.2		+	0	1555	65	1464	2636	3771	3771		1	9606
TNAENEFVTIKK	Unmodified	1392.7249	0.72489436	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.57	1.4	2	2	1	1	1	16.176	16.176	2;3	0	7863	DP1141_2	265.77	227.37		+	853710000	1556	65	1465	2637;2638;2639;2640;2641;2642;2643	3772;3773;3774;3775;3776;3777;3778;3779	3776		7	9606
TNKEEHKLQDSVPENK	Unmodified	1894.9385	0.93846896	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				13.639	13.639	3	0.0048092	4023	DP1141_2	123.1	86.878			2546100	1557	182	1466	2644	3780	3780		1	9606
TNRPPLSLSR	Unmodified	1139.6411	0.64110515	284	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					1	15.327	15.327	2	0.017199	6730	DP1141_5	101.66	55.274			122760000	1558	284	1467	2645	3781	3781		0	9606
TNVVTMPTAHPR	Oxidation (M)	1338.6714	0.671419	307	Q13428	TCOF1	Treacle protein	yes	yes	0	1	0	2.33	0.471		2	1			13.693	13.693	2;3	0.00011594	4076	DP1141_2	141.89	117.03			51037000	1559	307	1468	2646;2647;2648	3782;3783;3784;3785;3786	3783	275	5	9606
TPESKPTILVK	Unmodified	1211.7125	0.71253876	485	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	1	4	0				1		15.101	15.101	3	0.034504	7027	DP1141_4	84.507	35.509			18616000	1560	485	1469	2649	3787	3787		0	9606
TPGGVFLNLLK	Unmodified	1157.6808	0.6808447	431	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	3	0			1			22.102	22.102	2	0.011517	16799	DP1141_3	99.013	69.346			6545300	1561	431	1470	2650	3788	3788		0	9606
TPGPGAQSALR	Unmodified	1053.5567	0.55670682	231	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	3	2	1				1	14.789	14.789	2	6.421400000000001E-35	5621	DP1141_5	183.43	144.66			385620000	1562	231	1471	2651;2652	3789;3790;3791	3790		3	9606
TPKGPSSVEDIK	Unmodified	1256.6612	0.66123147	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		14.792	14.792	3	0.00070991	6507	DP1141_4	121.21	55.93			20928000	1563	80	1472	2653	3792	3792		1	9606
TPKGPSSVEDIKAK	Unmodified	1455.7933	0.79330827	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	5	0					1	14.106	14.106	3	0.0036453	4700	DP1141_5	115.83	69.03			7399800	1564	80	1473	2654	3793	3793		1	9606
TPLEQEIFNLLHK	Unmodified	1580.8562	0.85624288	417	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	2	0		1				22.694	22.694	3	0.0039547	17983	DP1141_2	98.337	77.531			18753000	1565	417	1474	2655	3794	3794		1	9606
TPPLITDYR	Unmodified	1074.571	0.5709599	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1.5	0.5	1	1				18.097	18.097	2	0.0084248	10961	DP1141_2	117.81	71.385			252110000	1566	100	1475	2656;2657	3795;3796	3796		2	9606
TPQQLWYTHEK	Unmodified	1429.699	0.69901396	115	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				16.895	16.895	3	0.010439	9138	DP1141_2	78.903	62.96			61633000	1567	115	1476	2658	3797	3797		1	9606
TPTSSPASSPLVAK	Unmodified	1341.714	0.71399532	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	1.12	1	1	1	1		15.713	15.713	2	2.2538000000000003E-224	6856	DP1141_3	247.96	173.79			4801900000	1568	316	1477	2659;2660;2661;2662	3798;3799;3800;3801;3802;3803;3804;3805;3806	3803		9	9606
TPVEPEVAIHR	Unmodified	1246.667	0.66698555	219	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					1	15.802	15.802	3	0.012499	7261	DP1141_5	96.113	70.068			127330000	1569	219	1478	2663	3807	3807		0	9606
TPVQYSQQQNSPQK	Unmodified	1631.7903	0.79034816	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			14.243	14.243	2	3.0993999999999997E-32	4756	DP1141_3	171.62	110.26			64016000	1570	182	1479	2664;2665	3808;3809	3809		2	9606
TQASSSFQDSSQPAGK	Unmodified	1624.7329	0.73289286	183	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2.33	1.25	1	1		1		14.408	14.408	2	4.3253E-22	5239	DP1141_2	160.56	137.19			47303000	1571	183	1480	2666;2667;2668	3810;3811;3812	3811		3	9606
TQMAEVLPSPR	Oxidation (M)	1243.6231	0.62307182	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	0	2	0		1				16.115	16.115	2	0.0081557	7810	DP1141_2	109.42	58.226			28656000	1572	100	1481	2669	3813	3813	117	1	9606
TQPSSGVDSAVGTLPATSPQSTSVQAK	Unmodified	2600.293	0.29295372	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.33	0.471		2	1			17.599	17.599	2;3	3.6177E-87	10435	DP1141_2	236.68	220.1			91884000	1573	307	1482	2670;2671;2672	3814;3815;3816	3815		3	9606
TQQAAQANITLQEQIEAIHK	Unmodified	2234.1655	0.16550878	331	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				18.762	18.762	3	8.9944E-55	12090	DP1141_2	139.11	105.74			20846000	1574	331	1483	2673	3817	3817		1	9606
TQSRPGGPPNPPGPSPK	Unmodified	1669.8536	0.85361712	60	O95785	WIZ	Protein Wiz	yes	yes	0	0	1	2	0		1				14.073	14.073	3	0.0026317	4688	DP1141_2	99.747	73.035			7868000	1575	60	1484	2674	3818	3818		0	9606
TSAAQAIHPGCGFLSENMEFAELCK	Oxidation (M)	2783.2353	0.23532096	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		1				19.954	19.954	3	2.3794E-14	13877	DP1141_2	129.66	116.47			0	1576	399	1485	2675	3819	3819	342	1	9606
TSASIGSLCADAR	Unmodified	1307.614	0.6139637	218	P60201	PLP1	Myelin proteolipid protein	yes	yes	0	0	0	2	0		1				16.907	16.907	2	1.7951E-104	9141	DP1141_2	208.33	155.61			60470000	1577	218	1486	2676	3820	3820		1	9606
TSGGDHAPDSPSGENSPAPQGR	Unmodified	2119.9155	0.91550169	394	Q96NY9	MUS81	Crossover junction endonuclease MUS81	yes	yes	0	0	0	3	0			1			13.745	13.745	3	2.6281E-09	4058	DP1141_3	116.69	103.66			3532000	1578	394	1487	2677	3821	3821		1	9606
TSLSAPPNSSSTENPK	Unmodified	1615.7689	0.76894402	335	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	1	0	1					14.748	14.748	2	0.0060421	5366	DP1141_1	93.623	63.687			4019500	1579	335	1488	2678	3822	3822		1	9606
TSPEMDIQNPDDGAR	Oxidation (M)	1660.6999	0.69987817	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				15.724	15.724	2	0.011208	7226	DP1141_2	96.745	79.578			19350000	1580	182	1489	2679	3823	3823	171	1	9606
TSQNSELNNMQDLVEDYKK	Oxidation (M)	2271.0325	0.03250528	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	2.67	1.49	2	1	1	1	1	16.898	16.898	2;3	4.9515E-74	9032	DP1141_1	191.63	161.61		+	254780000	1581	15	1490	2680;2681;2682;2683;2684;2685	3824;3825;3826;3827;3828;3829;3830	3826	17	7	9606
TSTAPAASPNVR	Unmodified	1170.5993	0.59929991	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					13.797	13.797	2	0.00063143	3885	DP1141_1	137.95	99.178			9262000	1582	101	1491	2686	3831;3832	3831		2	9606
TSTTSSMVASAEQPR	Oxidation (M)	1567.7148	0.71479996	176	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	4.33	0.471				2	1	14.25	14.25	2;3	3.3472E-09	5576	DP1141_4	142.19	104.64			361190000	1583	176	1492	2687;2688;2689	3833;3834;3835;3836;3837;3838;3839	3833	162	7	9606
TTAENEFVMLKK	Oxidation (M)	1425.7174	0.71736614	13	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	1	1	2	0		2				16.616	16.616	2;3	0.0070643	8659	DP1141_2	83.182	51.023		+	78379000	1584	13	1493	2690;2691	3840;3841;3842;3843	3841	8	4	9606
TTDGYLLR	Unmodified	937.4869	0.48689592	220	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.295	17.295	2	0.00036237	10623	DP1141_4	143.02	56.153			345070000	1585	220	1494	2692	3844	3844		1	9606
TTGFGMIYDSLDYAK	Unmodified	1680.7705	0.77052392	245	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	5	0					1	21.9	21.9	2	8.9069E-63	17050	DP1141_5	186.46	152.38			16492000	1586	245	1495	2693	3845	3845		1	9606
TTGIVETHFTFK	Unmodified	1379.7085	0.70851601	68	P63096;P09471;P08754;P04899	GNAI1;GNAO1;GNAI3;GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	no	0	0	0	3	0			1			18.178	18.178	2	1.9767E-05	10843	DP1141_3	128.03	64.608			0	1587	68	1496	2694	3846	3846		1	9606
TTNFAGILSQGLR	Unmodified	1376.7412	0.74121312	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	3	1.63	1		1		1	20.991	20.991	2	1.277E-85	15445	DP1141_1	192.44	152.38			226620000	1588	89	1497	2695;2696;2697	3847;3848;3849	3847		2	9606
TTPNSGDVQVTEDAVR	Unmodified	1687.8013	0.80130678	159	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	3	0			1			16.56	16.56	2	0.03362	8397	DP1141_3	92.19	37.406			6730700	1589	159	1498	2698	3850	3850		0	9606
TTPSYVAFTDTER	Unmodified	1486.694	0.69398816	93;98;114	P0DMV8;P0DMV9;P34931;P17066;P48741;P11142;P54652	HSPA1A;HSPA1B;HSPA1L;HSPA6;HSPA7;HSPA8;HSPA2	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3	0			1			18.404	18.404	2	0.00063289	11359	DP1141_3	125.68	102.76			762180000	1590	93;114;98	1499	2699	3851;3852	3851		2	9606
TTQVPQFILDDFIQNDR	Unmodified	2049.0167	0.016719282	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					23.103	23.103	2	1.9375E-18	18600	DP1141_1	154.23	110.85			14890000	1591	288	1500	2700	3853;3854	3853		2	9606
TTVEYLIK	Unmodified	965.54335	0.54334816	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.059	18.059	1	0.0019832	10945	DP1141_1	138.24	80.075			236110000	1592	302	1501	2701	3855	3855		1	9606
TVAIHSDVDASSVHVK	Unmodified	1663.8529	0.85294842	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	1.63	1		1		1	15.391	15.391	3;4	0.032554	6422	DP1141_3	64.565	44.961			385510000	1593	72	1502	2702;2703;2704	3856;3857;3858	3857		0	9606
TVAIYSEQDTGQMHR	Oxidation (M)	1750.7944	0.79444726	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.6	1.62	2	1		1	1	15.317	15.317	2;3	1.1177999999999999E-38	6372	DP1141_1	174.4	153.05			1546299999.9999998	1594	101	1503	2705;2706;2707;2708;2709	3859;3860;3861;3862;3863	3860	124	4	9606
TVAIYSEQDTGQMHR	Unmodified	1734.7995	0.79953264	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.33	0.471	2	1				16.133	16.133	2;3	9.2799E-05	7782	DP1141_1	133.04	104.61			71240000	1595	101	1503	2710;2711;2712	3864;3865;3866;3867	3864		4	9606
TVANLLSGK	Unmodified	901.52328	0.52328142	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3.5	0.5			1	1		17.595	17.595	2	0.0060858	10910	DP1141_4	131.62	12.873			23419000	1596	307	1504	2713;2714	3868;3869	3869		2	9606
TVAQSQQLETNSQR	Unmodified	1588.7805	0.78051176	175	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		14.388	14.388	2	0.002819	6014	DP1141_4	124.12	87.44			15583000	1597	175	1505	2715	3870;3871	3871		2	9606
TVELPLNKEEIER	Unmodified	1568.841	0.84098675	417	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	1	3	0			1			17.704	17.704	3	0.0090175	10076	DP1141_3	82.705	45.767			17381000	1598	417	1506	2716	3872	3872		1	9606
TVELSIPADPANLDSEAK	Unmodified	1868.9367	0.93673763	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					28.3	28.3	2	1.7002999999999998E-124	13671	DP1141_1	211.77	176.12			401100000	1599	302	1507	2717;2718	3873;3874;3875	3873		3	9606
TVGIVGNQPK	Unmodified	1011.5713	0.57129425	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	1	0	1					14.999	14.999	2	0.010662	5804	DP1141_1	110.12	57.334			9444200	1600	73	1508	2719	3876	3876		1	9606
TVLIMELINNVAK	Oxidation (M)	1472.8273	0.82725094	78	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		22.304	22.304	2	0.003905	17181	DP1141_3	107.83	76.4			14605000	1601	78	1509	2720;2721	3877;3878;3879	3877	57	3	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	Oxidation (M)	2944.4488	0.44880244	80	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	4.5	0.5				2	2	20.788	20.788	2;3;4	6.0176E-123	16009	DP1141_4	195.96	186.76			2533600000	1602	80	1510	2722;2723;2724;2725	3880;3881;3882;3883;3884;3885;3886	3880	59	6	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	Unmodified	2928.4539	0.45388781	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4.5	0.5				1	1	21.226	21.226	3;4	1.1157E-11	16688	DP1141_4	118.59	99.195			222980000	1603	80	1510	2726;2727	3887;3888	3887		2	9606
TVTAMDVVYALK	Unmodified	1309.6952	0.69517413	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	4.5	0.5				1	1	21.317	21.317	2	0.0010936	16710	DP1141_4	123.63	67.062			2051499999.9999998	1604	242	1511	2728;2729	3889;3890;3891	3889		3	9606
TVTAMDVVYALK	Oxidation (M)	1325.6901	0.69008876	242	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	5	0					1	19.705	19.705	2	0.00074898	14841	DP1141_5	120.68	62.249			2830200000	1605	242	1511	2730	3892;3893;3894;3895;3896;3897	3895	201	6	9606
TVTAMDVVYALKR	Oxidation (M)	1481.7912	0.79119978	242	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	4.75	0.433				1	3	23.352	23.352	2;3	5.1522E-56	12484	DP1141_5	188.87	157.34			4305600000	1606	242	1512	2731;2732;2733;2734	3898;3899;3900;3901;3902;3903;3904;3905	3903	201	7	9606
TVTAMDVVYALKR	Unmodified	1465.7963	0.79628516	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					5	29.727	29.727	2;3	0	14552	DP1141_5	306.33	276.56			1925099999.9999998	1607	242	1512	2735;2736;2737;2738;2739	3906;3907;3908;3909;3910;3911;3912;3913;3914;3915	3907		8	9606
TVTELVTK	Unmodified	889.51205	0.51204804	363	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	3	0			1			15.712	15.712	2	0.0004066	6837	DP1141_3	133.6	38.937			55767000	1608	363	1513	2740	3916	3916		0	9606
TVTNAVVTVPAYFNDSQR	Unmodified	1980.9905	0.99050453	98	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.904	19.904	2	0	13567	DP1141_3	292.57	211.69			103200000	1609	98	1514	2741	3917	3917		1	9606
TVVNKDVFRDPALK	Unmodified	1600.8937	0.89369102	222	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	16.686	16.686	3	0.0013101	8894	DP1141_5	111.79	58.759			71843000	1610	222	1515	2742	3918	3918		0	9606
TYGEPESAGPSR	Unmodified	1249.5575	0.55749468	197	P50402	EMD	Emerin	yes	yes	0	0	0	4	0				1		14.524	14.524	2	0.0011355	6225	DP1141_4	123.96	94.787			23173000	1611	197	1516	2743	3919	3919		1	9606
TYGGCEGPDAMYVK	Oxidation (M)	1562.6381	0.63812954	327	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	1	0	5	0					1	16.297	16.297	2	0.0080421	8289	DP1141_5	102.53	78.542			14178000	1612	327	1517	2744	3920;3921	3921	288	2	9606
TYQAIKDFNR	Unmodified	1254.6357	0.63568542	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.133	16.133	3	0.0024192	7698	DP1141_1	128.86	112.94			60399000	1613	302	1518	2745	3922	3922		1	9606
TYQELLVNQNPIAQPLASR	Unmodified	2154.1433	0.14331678	452	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	0	5	0					1	20.385	20.385	3	0.01737	14873	DP1141_5	59.281	38.327			13077000	1614	452	1519	2746	3923	3923		1	9606
TYQGSYGFR	Unmodified	1077.488	0.48795855	67	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.75	0.829			2	1	1	16.905	16.905	2	1.5632E-05	9934	DP1141_4	149.4	129.76			359960000	1615	67	1520	2747;2748;2749;2750	3924;3925;3926;3927;3928	3926		5	9606
TYSYLTPDLWK	Unmodified	1385.6867	0.68671794	109	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		21.246	21.246	2	0.0052409	16607	DP1141_4	155.84	115.78			0	1616	109	1521	2751	3929	3929		1	9606
VACIGAWHPAR	Unmodified	1236.6186	0.61859557	171	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	1	0	2					16.678	16.678	2;3	9.1304E-08	8555	DP1141_1	155.84	120.19			181850000	1617	171	1522	2752;2753	3930;3931;3932	3931		3	9606
VADGMVFGALLPCEECSGQLVFK	Oxidation (M)	2542.1906	0.1906026	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2	0		1				22.394	22.394	2	2.9122E-12	17588	DP1141_2	121.13	96.405			22499000	1618	89	1523	2754	3933;3934	3934	98	2	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	Oxidation (M)	2918.2988	0.29884374	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.8	0.748		2	2	1		15.011	15.011	3;4	1.2631E-20	5682	DP1141_3	108.79	95.698			1310800000	1619	316	1524	2755;2756;2757;2758;2759	3935;3936;3937;3938;3939	3938	282	4	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	Unmodified	2902.3039	0.30392911	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				15.524	15.524	4	3.0802999999999997E-21	6761	DP1141_2	126.1	100.28			209230000	1620	316	1524	2760	3940;3941	3941		2	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	Oxidation (M)	3074.4	0.39995476	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2.83	0.898		3	1	2		14.594	14.594	3;4;5	1.496E-08	5528	DP1141_2	90.378	66.514			1394900000	1621	316	1525	2761;2762;2763;2764;2765;2766	3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953	3945	282	12	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	Unmodified	3058.405	0.40504014	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.5		1	1			15.013	15.013	4	1.3966999999999998E-21	6128	DP1141_2	105.73	90.882			303540000	1622	316	1525	2767;2768	3954;3955;3956;3957	3955		4	9606
VAFDPEQKPLHGVLK	Unmodified	1676.925	0.92499115	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.67	1.25		1		1	1	17.201	17.201	3	3.2222E-15	9602	DP1141_2	156.52	89.242			5121500000	1623	316	1526	2769;2770;2771	3958;3959;3960;3961	3958		4	9606
VALVTFNSAAHNKPSLIR	Unmodified	1937.0847	0.084679688	358	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	2	0		1				17.798	17.798	3	0.031352	10739	DP1141_2	85.988	54.669			40415000	1624	358	1527	2772	3962	3962		1	9606
VAPAPAVVK	Unmodified	850.52764	0.52763852	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		14.453	14.453	2	0.025398	6016	DP1141_4	94.006	56.913			18126000	1625	239	1528	2773	3963	3963		1	9606
VAPAQPSEEGPGR	Unmodified	1293.6313	0.63132832	134	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	3	0			1			14.125	14.125	2	0.00046055	4498	DP1141_3	99.973	72.843			8702500	1626	134	1529	2774	3964	3964		1	9606
VAPEEHPVLLTEAPLNPK	Unmodified	1953.0571	0.057127534	254	P63261;P60709	ACTG1;ACTB	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	no	0	0	0	3	1.58	1	1		1	1	18.364	18.364	3	1.5145E-05	11483	DP1141_2	96.435	22.601			308520000	1627	254	1530	2775;2776;2777;2778	3965;3966;3967;3968;3969	3966		5	9606
VAQLEQVYIR	Unmodified	1217.6768	0.67682195	238	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	18.333	18.333	2	5.8718E-111	11584	DP1141_5	219.51	164.89			102580000	1628	238	1531	2779	3970;3971	3970		2	9606
VASGCLDINSSVK	Unmodified	1348.6657	0.66566492	73	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	5	0					1	16.686	16.686	2	0.00031114	8929	DP1141_5	113.38	75.076			25656000	1629	73	1532	2780	3972	3972		1	9606
VASLEESEGNKQDLK	Unmodified	1645.8159	0.81589421	286	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			14.839	14.839	3	0.00048969	5517	DP1141_3	179.83	108.57			0	1630	286	1533	2781	3973	3973		1	9606
VATVSLPR	Unmodified	841.50215	0.50215205	4	CON__P00761			yes	yes	0	0	0	3.43	1.4	1	1	1	2	2	16.345	16.345	1;2	1.0746E-90	8547	DP1141_5	204.65	56.323		+	48421000000	1631	4	1534	2782;2783;2784;2785;2786;2787;2788	3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993	3993		19	
VATWFNQPAR	Unmodified	1188.604	0.60399136	138	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					1	18.614	18.614	2	2.72E-11	12149	DP1141_5	174.27	121.49			65125000	1632	138	1535	2789	3994;3995	3994		2	9606
VAVCDIPPR	Unmodified	1025.5328	0.53280025	308	Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7	TUBB3;TUBB1	Tubulin beta-3 chain;Tubulin beta-1 chain	no	no	0	0	0	3	0			1			15.912	15.912	2	0.025158	7299	DP1141_3	84.498	60.295			9625100	1633	308	1536	2790	3996	3996		1	9606
VAYVSFGPHAGK	Unmodified	1231.635	0.63495714	199	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	16.588	16.588	3	0.00028553	8745	DP1141_5	124.67	97.882			108490000	1634	199	1537	2791	3997;3998	3997		2	9606
VCGSNLLSICK	Unmodified	1249.6159	0.61587795	218	P60201	PLP1	Myelin proteolipid protein	yes	yes	0	0	0	4	0				1		18.312	18.312	2	0.010736	12176	DP1141_4	102.06	52.639			0	1635	218	1538	2792	3999	3999		1	9606
VDDEPMDVDKGPGSTK	Oxidation (M)	1704.7512	0.75124504	304	Q13123	IK	Protein Red	yes	yes	0	1	1	3.5	0.5			1	1		14.187	14.187	3	0.00057714	4634	DP1141_3	111.64	73.445			21722000	1636	304	1539	2793;2794	4000;4001	4000	272	2	9606
VDENGPELLPR	Unmodified	1237.6303	0.63026569	381	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					17.948	17.948	2	0.009334	10652	DP1141_1	108.98	58.371			0	1637	381	1540	2795	4002	4002		1	9606
VDLLNQEIEFLK	Unmodified	1459.7922	0.79224564	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	1.41	1	1	1	1	1	22.341	22.341	2	2.965E-161	17464	DP1141_1	228.98	155		+	159530000	1638	15	1541	2796;2797;2798;2799;2800	4003;4004;4005;4006;4007;4008	4003		5	9606
VDMKEEPLAVSK	Oxidation (M)	1360.6908	0.69081704	182	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2	0		1				14.719	14.719	3	0.035628	5682	DP1141_2	98.368	48.737			43794000	1639	182	1542	2801	4009	4009	172	1	9606
VDMKEEPLAVSK	Unmodified	1344.6959	0.69590241	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.101	16.101	3	0.001656	7793	DP1141_2	98.902	64.516			0	1640	182	1542	2802	4010	4010		1	9606
VDNDENEHQLSLR	Unmodified	1567.7227	0.72266253	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4.2	0.748			1	2	2	19.757	19.757	2;3	0	6961	DP1141_5	317.44	248.59			15940000000	1641	80	1543	2803;2804;2805;2806;2807	4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021	4020		10	9606
VDNSSLTGESEPQTR	Unmodified	1618.7435	0.74345755	70;104	P05023;P50993;P20648;P13637	ATP1A1;ATP1A2;ATP4A;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	3	1.63	1		1		1	15.306	15.306	2	1.5786E-63	6197	DP1141_3	191.48	137.28			43480000	1642	70;104	1544	2808;2809;2810	4022;4023;4024;4025;4026	4024		5	9606
VDPEIQNVK	Unmodified	1040.5502	0.55022446	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	1	0	1					15.439	15.439	2	0.037658	6631	DP1141_1	80.438	50.271		+	54325000	1643	15	1545	2811	4027	4027		1	9606
VDPVYIHLAER	Unmodified	1310.6983	0.69828568	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.158	18.158	3	0.0093285	11051	DP1141_1	117.25	85.654			221530000	1644	302	1546	2812	4028	4028		1	9606
VDVADQAQDKDRDDR	Unmodified	1744.7976	0.79761838	134	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	2	3	0			1			13.219	13.219	3	0.028958	3271	DP1141_3	63.966	33.528			591280	1645	134	1547	2813	4029	4029		0	9606
VDVGGSEPASLSYLSFEGATK	Unmodified	2113.0215	0.021529888	441	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	0	4	0				1		20.896	20.896	2	6.4874E-08	16075	DP1141_4	145.7	120.51			16706000	1646	441	1548	2814	4030	4030		1	9606
VDWQENDFSK	Unmodified	1266.5517	0.55168102	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.258	18.258	2	4.7096E-10	11136	DP1141_1	159.28	126.46			192500000	1647	302	1549	2815	4031;4032	4031		2	9606
VEAKPEVQSQPPR	Unmodified	1463.7732	0.77324153	475	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	1	3.5	0.5			1	1		13.331	13.331	3	9.0361E-08	3873	DP1141_3	150.22	111.42			21326000	1648	475	1550	2816;2817	4033;4034;4035	4033		3	9606
VEEQEPELTSTPNFVVEVIK	Unmodified	2286.1631	0.16310875	285	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	5	0					1	21.635	21.635	2	1.6463E-11	16816	DP1141_5	165.86	139.15			83863000	1649	285	1551	2818	4036	4036		1	9606
VEEVLEEEEEEYVVEK	Unmodified	1979.9099	0.90991375	267	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	0	5	0					1	19.705	19.705	2	5.904799999999999E-135	13868	DP1141_5	220.31	176.81			27958000	1650	267	1552	2819	4037	4037		1	9606
VEGIVHPTTAEIDLKEDIGK	Unmodified	2163.1423	0.14231373	459	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	1	4	0				1		18.194	18.194	3	5.3258E-137	12086	DP1141_4	211.26	180.3			13709000	1651	459	1553	2820	4038	4038		1	9606
VEGRPGASLPPLDLQALEK	Unmodified	1989.0895	0.089490294	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.25	1.09	1	2		1		19.908	19.908	2;3	3.4061E-06	14778	DP1141_4	112.91	94.084			918500000	1652	101	1554	2821;2822;2823;2824	4039;4040;4041;4042;4043;4044	4044		6	9606
VEGTEPTTAFNLFVGNLNFNK	Unmodified	2311.1485	0.14846174	123	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.86	1.25	1	2	2	1	1	23.457	23.457	2;3	0	18995	DP1141_2	267.37	232.92			318860000	1653	123	1555	2825;2826;2827;2828;2829;2830;2831	4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058	4047		14	9606
VEILANDQGNR	Unmodified	1227.6208	0.62076364	114	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	4	1			1		1	15.582	15.582	2	3.6353E-17	6826	DP1141_3	169.44	0			2825800000	1654	114	1556	2832;2833	4059;4060;4061;4062	4059		4	9606
VEIMPPPPKPK	Oxidation (M)	1247.6948	0.6947802	99	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	1	1	3	0			1			14.507	14.507	3	0.0013493	5001	DP1141_3	121.5	86.7			9920800	1655	99	1557	2834	4063	4063	112	1	9606
VEINDLDPEVFKEMMR	2 Oxidation (M)	1995.9282	0.92816355	347	Q6IQ16	SPOPL	Speckle-type POZ protein-like	yes	yes	0	2	1	2	0		1				17.694	17.694	4	0.034439	10389	DP1141_2	45.434	27.734			5120000	1656	347	1558	2835	4064	4064	303;304	0	9606
VEQATKPSFESGR	Unmodified	1434.7103	0.71030693	166	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	1	4	0				1		14.388	14.388	3	0.0017226	5887	DP1141_4	117.2	88.994			34143000	1657	166	1559	2836	4065	4065		0	9606
VETFSGVYK	Unmodified	1028.5179	0.51786169	224	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	17.104	17.104	2	0.0098792	9585	DP1141_5	106.04	33.003			0	1658	224	1560	2837	4066	4066		1	9606
VETGVLKPGMVVTFAPVNVTTEVK	Oxidation (M)	2530.3717	0.37166174	256	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	1	0	1					19.936	19.936	3	0.004675	13815	DP1141_1	87.05	73.442			88040000	1659	256	1561	2838	4067	4067	212	1	9606
VETPPPHQAGTQLNR	Unmodified	1643.838	0.83796706	438	Q9HCJ0	TNRC6C	Trinucleotide repeat-containing gene 6C protein	yes	yes	0	0	0	2	0		1				14.113	14.113	3	0.013141	4857	DP1141_2	80.706	47.478			1528800	1660	438	1562	2839	4068	4068		1	9606
VETQFQNGHYDK	Unmodified	1464.6634	0.66335673	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					14.748	14.748	2;3	1.4742999999999998E-65	5497	DP1141_1	199.68	167.46			470200000	1661	302	1563	2840;2841	4069;4070;4071	4071		3	9606
VEVGTEVTDYR	Unmodified	1266.6092	0.6091959	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.161	17.161	2	2.2613E-06	9423	DP1141_1	172.59	127.84			1924499999.9999998	1662	302	1564	2842	4072;4073	4073		2	9606
VEVYPVELLLVR	Unmodified	1427.8388	0.8388019	202	P51784	USP11	Ubiquitin carboxyl-terminal hydrolase 11	yes	yes	0	0	0	2	0		1				23.406	23.406	2	0.015885	18980	DP1141_2	104.05	68.104			5776600	1663	202	1565	2843	4074	4074		1	9606
VFCVEEEDSESSLQK	Unmodified	1784.7775	0.77745979	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	0.471		2	1			24.122	24.122	2	2.4633E-265	10688	DP1141_2	254.34	209.72			4331800000	1664	316	1566	2844;2845;2846	4075;4076;4077	4075		3	9606
VFCVEEEDSESSLQKR	Unmodified	1940.8786	0.87857082	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1.22	1	2	2	2	1	16.891	16.891	2;3	0	9125	DP1141_2	277.15	244.53			2160500000	1665	316	1567	2847;2848;2849;2850;2851;2852;2853;2854	4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090	4082		12	9606
VFDYSEYWEGAR	Unmodified	1520.6572	0.65720872	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				20.918	20.918	2	0	15257	DP1141_2	256.47	194.77			150530000	1666	101	1568	2855;2856	4091;4092	4092		1	9606
VFLDVLMK	Unmodified	963.54633	0.54632505	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				21.301	21.301	2	0.013151	15961	DP1141_2	124.59	69.064			726440000	1667	316	1569	2857	4093;4094	4093		2	9606
VFLDVLMK	Oxidation (M)	979.54124	0.54123967	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.5	0.5			1	1		19.905	19.905	1;2	0.017854	13662	DP1141_3	74.127	24.769			128790000	1668	316	1569	2858;2859	4095;4096	4095	283	2	9606
VFLENVIR	Unmodified	988.57057	0.57056597	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					5	28.045	28.045	2	3.531E-69	13632	DP1141_5	200.96	114.87			19036000000	1669	242	1570	2860;2861;2862;2863;2864	4097;4098;4099;4100;4101;4102;4103;4104;4105	4097		9	9606
VFLENVIRDAVTYTEHAK	Unmodified	2104.0953	0.095303954	242	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					3	21.048	21.048	3	0.0025535	16370	DP1141_5	86.411	57.455			262530000	1670	242	1571	2865;2866;2867	4106;4107;4108;4109;4110	4107		3	9606
VFLKEDTGETHGDTR	Unmodified	1703.8115	0.81147753	369	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	1	5	0					1	14.575	14.575	3	0.01644	5347	DP1141_5	87.083	62.119			6262200	1671	369	1572	2868	4111	4111		0	9606
VFQFLNAK	Unmodified	965.53345	0.53345218	266	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	19.393	19.393	2	0.013128	13340	DP1141_5	128.75	84.063			74026000	1672	266	1573	2869	4112	4112		1	9606
VFQPPPPPPPAPSGDAPAEKER	Unmodified	2280.1539	0.15388147	400	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				16.583	16.583	3	0.010301	8584	DP1141_2	95.5	75.566			0	1673	400	1574	2870	4113	4113		1	9606
VFSATLGLVDIVK	Unmodified	1360.7966	0.79660274	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				21.901	21.901	2	2.6905E-73	16625	DP1141_2	190.86	155.68			341960000	1674	89	1575	2871	4114	4114		0	9606
VFYTGQVVK	Unmodified	1039.5702	0.57023162	317	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					17.185	17.185	2	0.011327	9451	DP1141_1	109.01	58.893			8217000	1675	317	1576	2872	4115	4115		1	9606
VGAGAPVYLAAVLEYLTAEILELAGNAAR	Unmodified	2914.5804	0.58040896	91;69;110	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;P16104;Q8IUE6	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;H2AFX;HIST2H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2AX;Histone H2A type 2-B	no	no	0	0	0	5	0					1	31.537	31.537	3	1.8314000000000002E-62	30007	DP1141_5	170.68	146.38			3109500	1676	69;91;110	1577	2873	4116;4117	4116		2	9606
VGAHAGEYGAEALER	Unmodified	1528.727	0.72701962	260	P69905	HBA1	Hemoglobin subunit alpha	yes	yes	0	0	0	3	0			1			16.451	16.451	3	0.0014002	8053	DP1141_3	86.641	1.7992			0	1677	260	1578	2874	4118	4118		1	9606
VGDGDLSAEEIPENEVSLR	Unmodified	2027.9647	0.96474329	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			19.402	19.402	2	2.8286E-13	13198	DP1141_2	188.96	152.01			2269100000	1678	316	1579	2875;2876	4119;4120;4121;4122	4119		4	9606
VGDGDLSAEEIPENEVSLRR	Unmodified	2184.0659	0.065854319	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	0.816		1	1	1		18.367	18.367	3	2.8840000000000003E-24	12173	DP1141_4	133.71	101.15			1759899999.9999998	1679	316	1580	2877;2878;2879	4123;4124;4125;4126	4126		3	9606
VGDVTPQVK	Unmodified	941.5182	0.51819605	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				14.62	14.62	2	0.0093541	5513	DP1141_2	119.41	56.748			6755300	1680	307	1581	2880	4127	4127		1	9606
VGGKELLADQNLK	Unmodified	1383.7722	0.7721789	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		2				16.304	16.304	2;3	1.4172E-22	8194	DP1141_2	169.58	111.21			214030000	1681	316	1582	2881;2882	4128;4129	4129		2	9606
VGINYQPPTVVPGGDLAK	Unmodified	1823.9781	0.97814893	257;409	P68363;P68366;Q9BQE3;Q71U36;P0DPH8;P0DPH7;Q9NY65;Q6PEY2	TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA8;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain	no	no	0	0	0	2	0.816	1	1	1			19.52	19.52	2	1.0084E-29	13084	DP1141_1	149.69	101.18			1405200000	1682	257;409	1583	2883;2884;2885	4130;4131;4132	4130		2	9606
VGIPVTDENGNR	Unmodified	1269.6313	0.63132832	434	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		16.063	16.063	2	0.00618	8600	DP1141_4	134.26	115.02			25375000	1683	434	1584	2886	4133	4133		0	9606
VGPATPSAQVGK	Unmodified	1110.6033	0.60332266	307	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	0.5		1	1			14.663	14.663	2	1.0535E-07	5646	DP1141_2	152.11	129.33			143090000	1684	307	1585	2887;2888	4134;4135;4136	4135		3	9606
VGPEELPVVGQLLR	Unmodified	1504.8613	0.86132826	454	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				22.201	22.201	2	0.011734	17312	DP1141_2	86.189	45.08			15959000	1685	454	1586	2889	4137	4137		1	9606
VGTVIGSNKLEQMPSKEDAIEHFMK	2 Oxidation (M)	2819.3834	0.38336541	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	2	2	0		1				16.906	16.906	4	0.017309	9149	DP1141_2	42.289	25.073			87331000	1686	89	1587	2890	4138	4138	91;92	1	9606
VGTVIGSNKLEQMPSKEDAIEHFMK	Oxidation (M)	2803.3885	0.38845079	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	2	2	0		1				17.84	17.84	4	0.0046983	10974	DP1141_2	48.077	28.317			38105000	1687	89	1587	2891	4139	4139	91;92	1	9606
VGVKEELLAVGK	Unmodified	1240.7391	0.73908786	182	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		1				17.698	17.698	2	0.010372	10352	DP1141_2	136.81	100.25			38224000	1688	182	1588	2892	4140	4140		1	9606
VHIDIGADGR	Unmodified	1051.5411	0.54105675	148	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4.5	0.5				1	1	15.891	15.891	2	0.011718	8411	DP1141_4	106.68	33.435			65896000	1689	148	1589	2893;2894	4141;4142	4141		1	9606
VHIEIGPDGR	Unmodified	1091.5724	0.57235688	149;206	P52597;P31943;P55795	HNRNPF;HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	4	0				1		16.063	16.063	2	0.0035152	8719	DP1141_4	120.15	99.634			85114000	1690	206;149	1590	2895	4143	4143		1	9606
VHNEGLPAPIVR	Unmodified	1300.7252	0.72516913	3	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			yes	no	0	0	0	3.43	1.18		2	2	1	2	16.405	16.405	2;3	0.0002548	8067	DP1141_3	101.35	65.612		+	412030000	1691	3	1591	2896;2897;2898;2899;2900;2901;2902	4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154	4148		11	
VIAGLYQR	Unmodified	918.5287	0.52870115	263	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.92	16.92	2	0.0061173	8947	DP1141_1	114.54	62.137			25591000	1692	263	1592	2903	4155	4155		1	9606
VIDPVTGKPCAGTTYLESPLSSETTQLSK	Unmodified	3078.5431	0.54309675	481	Q9Y2R5	MRPS17	28S ribosomal protein S17, mitochondrial	yes	yes	0	0	1	5	0					1	19.701	19.701	3	0.0001051	13862	DP1141_5	61.488	39.168			18695000	1693	481	1593	2904	4156	4156		1	9606
VIEHIMEDLDTNADK	Oxidation (M)	1757.8142	0.81417965	79	P06702	S100A9	Protein S100-A9	yes	yes	0	1	0	5	0					1	16.645	16.645	2	0.00030332	8813	DP1141_5	153.75	112.05			0	1694	79	1594	2905	4157	4157	58	1	9606
VIGLQIFNIDTDR	Unmodified	1502.8093	0.80929269	346	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	3.5	0.5			1	1		22.323	22.323	2	1.1295E-16	17244	DP1141_3	162.38	120.03			23687000	1695	346	1595	2906;2907	4158;4159;4160	4158		3	9606
VIMVTGDHPITAK	Oxidation (M)	1396.7384	0.73843593	70;104	P05023;P50993;Q13733;P20648;P54707;P13637	ATP1A1;ATP1A2;ATP1A4;ATP4A;ATP12A;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 1;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	1	0	4.5	0.5				1	1	15.553	15.553	3	8.3209E-06	7741	DP1141_4	117.86	75.057			26131000	1696	70;104	1596	2908;2909	4161;4162	4161	47	2	9606
VINEPTAAALAYGLDKSEDK	Unmodified	2104.0688	0.068814432	168	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	3	0			1			19.381	19.381	3	0.013426	12728	DP1141_3	83.213	60.339			0	1697	168	1597	2910	4163	4163		1	9606
VITEEEKNFK	Unmodified	1235.6398	0.63976774	138	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	5	0					1	14.82	14.82	3	0.0084586	5807	DP1141_5	106.6	74.185			88260000	1698	138	1598	2911	4164	4164		1	9606
VKPAPDETSFSEALLK	Unmodified	1730.9091	0.90906631	298	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	4	0				1		18.695	18.695	3	5.9068E-10	12778	DP1141_4	123.76	101.95			114220000	1699	298	1599	2912	4165	4165		1	9606
VLAFLVLSR	Unmodified	1016.6383	0.6382516	487	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1.5	0.5	1	1				21.869	21.869	2	1.0563E-92	16708	DP1141_1	201.49	136.68			36117000	1700	487	1600	2913;2914	4166;4167	4166		1	9606
VLAIGDEKDQTR	Unmodified	1343.7045	0.70449327	295	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	1	1	0	1					15.153	15.153	3	0.00052158	6017	DP1141_1	113.38	57.573			7512500	1701	295	1601	2915	4168	4168		1	9606
VLATVTKPVGGDK	Unmodified	1283.7449	0.74490152	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	3	1.67	2			2	1	14.605	14.605	2;3	3.137E-54	6226	DP1141_4	187.16	116.34			266080000	1702	276	1602	2916;2917;2918;2919;2920	4169;4170;4171;4172;4173;4174	4173		6	9606
VLCAVSGPR	Unmodified	957.50659	0.5065855	341	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		15.25	15.25	2	0.011197	7248	DP1141_4	108.46	45.746			0	1703	341	1603	2921	4175	4175		1	9606
VLDELTLTK	Unmodified	1030.591	0.59102664	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	2	1				1	18.542	18.542	2	0.01394	11950	DP1141_5	107.29	59.637		+	542200000	1704	12	1604	2922;2923	4176;4177	4177		1	9606
VLDLVEVLVTK	Unmodified	1226.7486	0.74858991	410	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				22.694	22.694	2	0.00037356	17921	DP1141_2	136.96	87.243			52665000	1705	410	1605	2924	4178	4178		0	9606
VLDSGAPIK	Unmodified	898.51238	0.51238239	78	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			15.4	15.4	2	0.024496	6352	DP1141_3	86.794	24.135			15431000	1706	78	1606	2925	4179	4179		1	9606
VLEQLTGQTPVFSK	Unmodified	1545.8403	0.84025847	250	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	19.223	19.223	2	2.613E-70	13054	DP1141_5	230.81	154.75			403090000	1707	250	1607	2926	4180;4181	4180		2	9606
VLFLLGADGGCITR	Unmodified	1490.7915	0.79153413	141	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	3	0			1			21.607	21.607	2	0.012435	16003	DP1141_3	87.298	60.409			3043600	1708	141	1608	2927	4182	4182		1	9606
VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK	Unmodified	3393.8296	0.82964079	455	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	3	0			1			19.105	19.105	4	0.00034532	12370	DP1141_3	52.814	37.484			40140000	1709	455	1609	2928	4183	4183		1	9606
VLGMDPLPSK	Oxidation (M)	1071.5634	0.56343168	299	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	1	0	2	0		1				16.633	16.633	2	0.026449	8723	DP1141_2	103.55	71.612			28785000	1710	299	1610	2929	4184	4184	238	1	9606
VLHNAQEVEKEPGQR	Unmodified	1732.8856	0.88564553	195	P49916	LIG3	DNA ligase 3	yes	yes	0	0	1	2	0.894	2	1	2			13.804	13.804	3;4	0.0047248	4010	DP1141_1	89.992	71.521			30725000	1711	195	1611	2930;2931;2932;2933;2934	4185;4186;4187;4188;4189	4186		5	9606
VLIANNGIAAVK	Unmodified	1181.7132	0.71320746	302;31	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					17.659	17.659	2	6.2792E-22	10063	DP1141_1	156.75	113.89			1265500000	1712	302;31	1612	2935	4190	4190		0	9606
VLISDSLDPCCR	Unmodified	1433.6643	0.66428471	40	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			18.858	18.858	2	0.031606	11917	DP1141_3	94.309	59.777			0	1713	40	1613	2936	4191	4191		1	9606
VLKQVHPDTGISSK	Unmodified	1507.8358	0.83584179	47;216;133	P57053;O60814;Q16778;P33778;P23527;Q8N257;Q96A08;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	H2BFS;HIST1H2BK;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	1	5	0					1	14.049	14.049	2	5.6743E-146	4609	DP1141_5	227.48	175.72			9322300	1714	47;133;216	1614	2937	4192	4192		1	9606
VLLGPLSPYTIEFLR	Unmodified	1716.9814	0.98144339	480	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		23.993	23.993	2	0.010513	20775	DP1141_4	75.045	42.185			6085700	1715	480	1615	2938	4193	4193		1	9606
VLNNFISNQK	Unmodified	1175.6299	0.62987176	182	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			17.3	17.3	2	1.2531E-51	9798	DP1141_2	181.55	124.83			71442000	1716	182	1616	2939;2940	4194;4195	4194		1	9606
VLPLEALVTDAGEVTEAGK	Unmodified	1911.0201	0.020073325	381	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	2	0		1				23.561	23.561	3	0.013598	19212	DP1141_2	61.015	38.819			6725900	1717	381	1617	2941	4196;4197	4196		2	9606
VLPPPAGYVPIR	Unmodified	1277.7496	0.74959297	53	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				18.999	18.999	2	0.024402	12548	DP1141_2	69.954	33.62			7940800	1718	53	1618	2942	4198;4199	4198		2	9606
VLPSIVNEVLK	Unmodified	1209.7333	0.7332742	404	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		20.997	20.997	2	0.029619	16256	DP1141_4	104.42	44.305			89493000	1719	404	1619	2943	4200;4201	4201		2	9606
VLSIGDGIAR	Unmodified	999.57129	0.57129425	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		18.099	18.099	2	3.6452E-07	11802	DP1141_4	143.73	62.353			227720000	1720	137	1620	2944;2945	4202;4203	4203		1	9606
VLSRPNAQELPSMYQR	Unmodified	1887.9625	0.96251564	404	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	1	4	0				1		17.595	17.595	3	0.0026756	11016	DP1141_4	85.28	53.504			22014000	1721	404	1621	2946	4204	4204		1	9606
VLVATNVAAR	Unmodified	1012.6029	0.60292873	408	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				16.024	16.024	2	2.8888000000000003E-24	7628	DP1141_2	176.09	100.9			31914000	1722	408	1622	2947	4205	4205		1	9606
VLYDAEISQIHQSVTDTNVILSMDNSR	Oxidation (M)	3063.4819	0.48189348	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1	0	1					20.936	20.936	3	4.478E-05	15320	DP1141_1	88.278	69.718		+	44478000	1723	15	1623	2948	4206	4206	18	1	9606
VMEIVDADEKVR	Oxidation (M)	1418.7075	0.70752973	490	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	1	1	0	1					15.542	15.542	3	0.0067433	6551	DP1141_1	119.03	70.561			41557000	1724	490	1624	2949	4207	4207	391	0	9606
VMLALPSVR	Oxidation (M)	1000.5739	0.57393679	330	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		18.795	18.795	2	0.014713	12998	DP1141_4	122.74	63.761			53529000	1725	330	1625	2950	4208	4208	293	0	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	Oxidation (M)	3301.5555	0.55546913	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3	1		1		1		18.168	18.168	3	7.1527E-35	11273	DP1141_2	140	117.03			502730000	1726	316	1626	2951;2952	4209;4210;4211;4212	4209	284	4	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	Unmodified	3285.5606	0.56055451	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				18.698	18.698	3	4.7209E-07	12497	DP1141_2	71.37	57.022			265030000	1727	316	1626	2953	4213;4214;4215	4214		3	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	Oxidation (M)	3429.6504	0.65043215	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	3.29	1.03		2	2	2	1	17.383	17.383	3;4	1.8485E-61	9917	DP1141_2	163.52	147.91			1199600000	1728	316	1627	2954;2955;2956;2957;2958;2959;2960	4216;4217;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232;4233;4234;4235;4236;4237;4238	4216	284	23	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	Unmodified	3413.6555	0.65551752	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.5		2	2			18.129	18.129	3;4	1.5356E-30	10698	DP1141_2	127.77	111.76			257500000	1729	316	1627	2961;2962;2963;2964	4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250	4239		12	9606
VNILEVASGAVLR	Unmodified	1339.7823	0.78234966	294	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					22.209	22.209	2	6.2136E-05	17169	DP1141_1	115	69.982			0	1730	294	1628	2965	4251	4251		1	9606
VNNADDFPNLFR	Unmodified	1420.6735	0.67352749	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.736	20.736	2	1.1353E-79	15130	DP1141_1	201.61	157.96			117240000	1731	302	1629	2966	4252;4253	4252		2	9606
VNTLIRPDGEK	Unmodified	1240.6776	0.67755023	240	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					2	14.966	14.966	2;3	2.1891000000000002E-131	6079	DP1141_5	224.75	152.52			362410000	1732	240	1630	2967;2968	4254;4255	4255		2	9606
VPDEEENEESDNEKETEK	Unmodified	2148.8819	0.8818611	100	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	2	0		1				13.604	13.604	3	0.00047021	4013	DP1141_2	93.738	72.484			1587300	1733	100	1631	2969	4256	4256		1	9606
VPHWYHFSCFWK	Unmodified	1692.766	0.76598809	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				20.4	20.4	3	0.0069837	14686	DP1141_2	96.756	68.047			226970000	1734	89	1632	2970	4257	4257		1	9606
VPLSEFDFSWSK	Unmodified	1440.6925	0.6925316	450	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	4	1			1		1	21.903	21.903	2	0.00081443	16661	DP1141_3	117.52	94.94			86092000	1735	450	1633	2971;2972	4258;4259	4258		2	9606
VPMMSDPQAVLR	2 Oxidation (M)	1374.6636	0.66355643	22	CON__Q95121			yes	yes	0	2	0	4	0				1		18.094	18.094	3	0.030211	11813	DP1141_4	45.879	15.674		+	15262000	1736	22	1634	2973	4260;4261	4260	19;20	2	
VPPAINQFTQALDR	Unmodified	1568.8311	0.83109076	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4.5	0.5				1	1	20.584	20.584	2	5.2529E-125	15670	DP1141_4	218.07	171.28			340710000	1737	239	1635	2974;2975	4262;4263;4264	4263		3	9606
VPPFVDLNVNSNEGK	Unmodified	1627.8206	0.82058566	450	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	5	0					1	19.493	19.493	2	0.0074029	13678	DP1141_5	101.71	71.968			14131000	1738	450	1636	2976	4265	4265		1	9606
VPPPPPIAR	Unmodified	942.56509	0.56508666	83	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4.5	0.5				1	1	15.655	15.655	2	0.0075008	7928	DP1141_4	128.48	70.317			581300000	1739	83	1637	2977;2978	4266;4267;4268;4269	4267		4	9606
VPPVPDYVAHPER	Unmodified	1474.7569	0.75686319	492	Q9Y5U2	TSSC4	Protein TSSC4	yes	yes	0	0	0	4	0				1		16.889	16.889	3	0.015574	9914	DP1141_4	87.001	57.194			6764700	1740	492	1638	2979	4270	4270		1	9606
VPQAQPTKPALK	Unmodified	1276.7503	0.75032125	61	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	3	0			1			13.973	13.973	3	0.0047342	4331	DP1141_3	105.13	74.928			19524000	1741	61	1639	2980	4271;4272	4271		2	9606
VPQFSFSR	Unmodified	966.49232	0.49231565	140	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					18.558	18.558	2	0.0078814	11695	DP1141_1	111.82	41.817			30606000	1742	140	1640	2981	4273	4273		1	9606
VPSFAAGR	Unmodified	803.42899	0.42898711	25	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			15.912	15.912	2	0.012905	7215	DP1141_3	128.86	70.31			9404300	1743	25	1641	2982	4274	4274		1	9606
VPTWGPLR	Unmodified	924.51814	0.51813647	299	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				18.899	18.899	2	0.014639	12458	DP1141_2	108.98	70.164			46740000	1744	299	1642	2983	4275	4275		1	9606
VPVSVNLLSK	Unmodified	1054.6386	0.63864553	56	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			18.604	18.604	2	0.0034721	11454	DP1141_3	120.31	58.199			9689600	1745	56	1643	2984	4276	4276		1	9606
VQAERPDTMLGVVCGALHVADVSLR	Oxidation (M)	2708.3738	0.37380377	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					20.236	20.236	3;4	0.0010092	14389	DP1141_1	71.091	52.187			419570000	1746	302	1644	2985;2986	4277;4278	4277	268	2	9606
VQALEEANNDLENK	Unmodified	1585.7584	0.75837933	14	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0		1				17.007	17.007	2	2.036E-224	9394	DP1141_2	248.21	196.44		+	146940000	1747	14	1645	2987	4279;4280	4279		2	9606
VQDQDLPNTPHSK	Unmodified	1477.7161	0.71612058	289	Q08554	DSC1	Desmocollin-1	yes	yes	0	0	0	2	0		1				14.14	14.14	3	0.030101	4839	DP1141_2	44.968	16.26			6627700	1748	289	1646	2988	4281	4281		1	9606
VQENCIDLVGR	Unmodified	1301.6398	0.63978452	53	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				17.64	17.64	2	0.0061659	10291	DP1141_2	106.2	61.822			0	1749	53	1647	2989	4282	4282		1	9606
VQKDESSTGSLAMSTRPR	Oxidation (M)	1964.9586	0.95855248	353	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	1	2	2	0		1				13.623	13.623	4	0.019972	4024	DP1141_2	54.812	28.989			5946300	1750	353	1648	2990	4283	4283	309	1	9606
VQQAELHTGSLPR	Unmodified	1434.7579	0.75792582	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.25	1.64	2	1			1	15.528	15.528	2;3	3.2207E-86	6634	DP1141_1	202	156.98			2066499999.9999998	1751	302	1649	2991;2992;2993;2994	4284;4285;4286;4287;4288;4289;4290	4284		6	9606
VRPDYTAQNLDHGK	Unmodified	1612.7958	0.79576789	264	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	1	5	0					1	14.509	14.509	3	0.0013957	5330	DP1141_5	123.76	99.674			32805000	1752	264	1650	2995	4291	4291		1	9606
VSALNSVHCEHVEDEGESR	Unmodified	2152.9444	0.94435897	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					15.257	15.257	2;3;4	2.5202E-279	6224	DP1141_1	256.35	226.01			1432200000	1753	302	1651	2996;2997;2998	4292;4293;4294;4295;4296;4297;4298	4298		7	9606
VSPQPMISRLQQPR	Unmodified	1635.8879	0.88789414	461	Q9P270	SLAIN2	SLAIN motif-containing protein 2	yes	yes	0	0	1	2.75	1.48	1	1	1		1	19.757	19.757	3	0.0054583	13528	DP1141_2	85.672	60.438			964310000	1754	461	1652	2999;3000;3001;3002	4299;4300;4301;4302;4303;4304	4300		6	9606
VSYFAVFDGHGGIR	Unmodified	1523.7521	0.75211216	425	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	4	0				1		19.998	19.998	3	0.0048655	14797	DP1141_4	107.09	80.98			17213000	1755	425	1653	3003	4305	4305		1	9606
VTADVINAAEK	Unmodified	1129.5979	0.59790293	40	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			16.182	16.182	2	0.018059	7610	DP1141_3	97.597	37.119			0	1756	40	1654	3004	4306	4306		1	9606
VTATDLDEPDTLHTR	Unmodified	1682.8111	0.81114318	289	Q08554	DSC1	Desmocollin-1	yes	yes	0	0	0	1	0	1					16.595	16.595	3	0.0077732	8421	DP1141_1	67.136	25.452			14738000	1757	289	1655	3005	4307	4307		1	9606
VTFGLNR	Unmodified	805.44464	0.44463717	316	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	5	0					1	17.236	17.236	2	2.6353E-06	9911	DP1141_5	142.63	64.686			114020000	1758	316	1656	3006	4308;4309	4308		2	9606
VTIAQGGVLPNIQAVLLPK	Unmodified	1930.1615	0.16153303	91;69	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	4.27	1.35	1	1		1	8	28.492	28.492	2	2.5338E-170	17957	DP1141_5	228.62	175.37			14132000000	1759	69;91	1657	3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017	4310;4311;4312;4313;4314;4315;4316;4317;4318;4319;4320;4321;4322;4323;4324;4325;4326;4327;4328;4329;4330;4331;4332;4333;4334;4335;4336;4337;4338	4316		29	9606
VTIAQGGVLPNIQAVLLPKK	Unmodified	2058.2565	0.25649604	91;69	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	1	4	0				1		17.435	17.435	5	0.038026	10806	DP1141_4	12.38	8.939			2345800	1760	69;91	1658	3018	4339	4339		0	9606
VTKNEEPSEEEIDAPKPK	Unmodified	2039.0059	0.005879824	443	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	2	1.5	0.5	1	1				14.633	14.633	4	0.00027254	5251	DP1141_1	101.05	76.376			25004000	1761	443	1659	3019;3020	4340;4341	4340		1	9606
VTLATLK	Unmodified	744.47454	0.47454032	80	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		16.601	16.601	1	0.026171	9309	DP1141_4	111.65	17.642			1562299999.9999998	1762	80	1660	3021	4342	4342		1	9606
VTMQNLNDR	Unmodified	1089.5237	0.52369213	12;5;10	P13645;CON__P13645;CON__P02535-1;CON__Q7Z3Y7;CON__Q148H6;Q7Z3Y7;CON__A2A4G1;Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Z0;CON__Q7Z3Y8;CON__Q7Z3Y9;Q7Z3Y9;CON__P02533;P02533;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779;P08779	KRT10;KRT28;KRT27;KRT25;KRT26;KRT14;KRT16	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	0	2.33	1.25	1	1		1		15.622	15.622	2	0.0034192	7856	DP1141_4	137.9	59.982		+	954340000	1763	12;5;10	1661	3022;3023;3024	4343;4344;4345	4345		2	9606
VTQDELKEVFEDAAEIR	Unmodified	1990.9848	0.98475045	123	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.4	1.02	1	2	1	1		21.809	21.809	2;3	5.1537000000000004E-167	16612	DP1141_2	224.34	160.12			642740000	1764	123	1662	3025;3026;3027;3028;3029	4346;4347;4348;4349;4350;4351;4352;4353;4354	4350		9	9606
VVDALGNAIDGK	Unmodified	1170.6245	0.62445203	137	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.804	17.804	2	6.6914E-05	10322	DP1141_3	144.77	85.615			189290000	1765	137	1663	3030	4355	4355		1	9606
VVDLLAPYAK	Unmodified	1087.6277	0.6277465	78	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.904	19.904	2	0.012161	13436	DP1141_3	104.06	78.118			7019600	1766	78	1664	3031;3032	4356;4357	4356		1	9606
VVDLMAHMASKE	Oxidation (M)	1345.637	0.63700733	66	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	1	4	0				1		15.54	15.54	3	0.036689	7846	DP1141_4	55.261	27.585			18778000	1767	66	1665	3033	4358	4358	43	1	9606
VVDRDSEEAEIIR	Unmodified	1529.7686	0.76855009	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				16.215	16.215	3	0.011908	7998	DP1141_2	89.747	67.972			192510000	1768	89	1666	3034	4359;4360	4360		2	9606
VVDRDSEEAEIIRK	Unmodified	1657.8635	0.8635131	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	3.5	1.12		1	1	1	1	15.202	15.202	3	7.5044E-13	6063	DP1141_3	145.49	98.788			766140000	1769	89	1667	3035;3036;3037;3038	4361;4362;4363;4364;4365	4362		3	9606
VVEEAPSIFLDAETR	Unmodified	1674.8465	0.84646606	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			20.612	20.612	2	1.8895E-235	14528	DP1141_3	248.42	194.83			93410000	1770	72	1668	3039;3040	4366;4367	4367		2	9606
VVEIAPAAHLDPQLR	Unmodified	1627.9046	0.90459006	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			18.32	18.32	2;3	0.00086236	11361	DP1141_1	127.79	86.566			1474399999.9999998	1771	101	1669	3041;3042;3043	4368;4369;4370;4371;4372	4369		5	9606
VVHSYEELEENYTR	Unmodified	1766.8111	0.81114318	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.58	1	1		1	1	17.703	17.703	2;3	4.9595E-88	10393	DP1141_2	172.33	137.41			1199300000	1772	101	1670	3044;3045;3046;3047	4373;4374;4375;4376	4374		3	9606
VVLVLAGR	Unmodified	825.54362	0.54362294	222	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	17.998	17.998	2	2.3743E-06	11222	DP1141_5	153.67	72.291			171910000	1773	222	1671	3048	4377	4377		1	9606
VVNANQNASPNVPGKR	Unmodified	1663.8754	0.87541519	362	Q8IWI9	MGA	MAX gene-associated protein	yes	yes	0	0	1	2	0		1				13.855	13.855	3	0.010583	4283	DP1141_2	68.283	40.346			1901400	1774	362	1672	3049	4378	4378		0	9606
VVNPLFEK	Unmodified	944.53312	0.53311783	239	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		18.094	18.094	2	0.037545	11862	DP1141_4	113.5	56.397			186680000	1775	239	1673	3050	4379	4379		0	9606
VVPSDLYPLVLGFLR	Unmodified	1686.9709	0.97087871	322	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	5	0					1	25.338	25.338	2	0.010879	22170	DP1141_5	96.015	64.381			3380900	1776	322	1674	3051	4380	4380		1	9606
VVQGDIGEANEDVTQIVEILHSGPSK	Unmodified	2733.3821	0.38210308	359	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				22.301	22.301	3	7.962199999999999E-19	17330	DP1141_2	114.64	79.957			39826000	1777	359	1675	3052	4381;4382	4382		2	9606
VVSEDFLQDVSASTK	Unmodified	1623.7992	0.79918151	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0.816	1	1	1			20.048	20.048	2	0	13819	DP1141_3	290.28	237.55			374670000	1778	89	1676	3053;3054;3055	4383;4384;4385;4386	4386		3	9606
VVWVEESDKR	Unmodified	1245.6354	0.63535107	30	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	1	3	0			1			16.112	16.112	3	0.020723	7497	DP1141_3	90.906	37.155			5837200	1779	30	1677	3056	4387	4387		1	9606
VVYASATGASEPR	Unmodified	1306.6517	0.65172941	2	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	1	0	1					15.257	15.257	2	1.1269E-07	6151	DP1141_1	146.11	103.76			10707000	1780	2	1678	3057	4388	4388		1	9606
VWDDGIIDPADTR	Unmodified	1471.6943	0.69432251	436	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	1.7	1			1	1	19.946	19.946	2	1.5704E-55	13823	DP1141_1	188.99	132.07			117580000	1781	436	1679	3058;3059;3060	4389;4390;4391;4392;4393;4394	4390		6	9606
VYAEDPYK	Unmodified	983.46001	0.46001246	72	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			15.725	15.725	2	0.00034064	6881	DP1141_3	134.66	79.222			143580000	1782	72	1680	3061;3062	4395;4396	4396		1	9606
VYNYNHLMPTR	Oxidation (M)	1422.6714	0.671419	222	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	5	0					2	15.661	15.661	2;3	0.021804	7232	DP1141_5	101.38	74.052			142050000	1783	222	1681	3063;3064	4397;4398;4399	4399	193	2	9606
WDEMNILATYHPADK	Oxidation (M)	1818.8247	0.82468476	176	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	1	0	5	0					1	23.569	23.569	2	0.035392	19649	DP1141_5	65.278	19.513			5562900	1784	176	1682	3065	4400	4400	163	1	9606
WECKNDTLLGIK	Unmodified	1475.7442	0.74424959	130	P22897	MRC1	Macrophage mannose receptor 1	yes	yes	0	0	1	3	1		1		1		20.301	20.301	2	0.0097904	14407	DP1141_2	137.14	93.365			100960000	1785	130	1683	3066;3067	4401;4402	4401		2	9606
WELLQQVDTSTR	Unmodified	1474.7416	0.74160705	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					20.236	20.236	2	3.797699999999999E-214	14288	DP1141_1	243.53	164.38		+	119040000	1786	65	1684	3068	4403;4404	4403		2	9606
WKDSDEADLVLAK	Unmodified	1488.746	0.74602373	305	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	1	5	0					1	18.098	18.098	3	0.017251	11145	DP1141_5	93.649	38.699			65523000	1787	305	1685	3069	4405	4405		0	9606
WMLAGRPHPTQK	Unmodified	1420.7398	0.73977334	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.644	15.644	3	0.010518	6875	DP1141_1	120.86	84.327			233620000	1788	302	1686	3070	4406	4406		1	9606
WMLAGRPHPTQK	Oxidation (M)	1436.7347	0.73468796	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	1	1				14.96	14.96	3	0.0095499	5799	DP1141_1	98.156	51.094			266680000	1789	302	1686	3071;3072	4407;4408	4407	269	0	9606
WQNNLLPSR	Unmodified	1126.5883	0.5883413	229	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	18.337	18.337	2	0.0040727	11664	DP1141_5	136.27	103.95			52100000	1790	229	1687	3073	4409;4410	4409		2	9606
WYHPGCFVK	Unmodified	1192.5488	0.54878467	89	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				17.698	17.698	2	0.023755	10461	DP1141_2	89.369	49.822			162050000	1791	89	1688	3074	4411	4411		1	9606
YALTGDEVKK	Unmodified	1122.5921	0.59208927	127	P22090;P62701;Q8TD47	RPS4Y1;RPS4X;RPS4Y2	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	1	4	0				1		14.902	14.902	2	0.016245	6667	DP1141_4	93.178	44.081			8289500	1792	127	1689	3075	4412	4412		0	9606
YDSAPATDGSGTALGWTVAWK	Unmodified	2153.0065	0.006548526	23	CON__Streptavidin			yes	yes	0	0	0	5	0					6	24.279	24.279	2;3	2.3343000000000002E-207	17049	DP1141_5	233.28	177.51		+	3963599999.9999995	1793	23	1690	3076;3077;3078;3079;3080;3081	4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423	4415		11	
YEELQITAGR	Unmodified	1178.5932	0.5931519	65	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2.75	1.09	1		2	1		17.659	17.659	2	2.9405E-74	10126	DP1141_1	199.89	92.597		+	1629899999.9999998	1794	65	1691	3082;3083;3084;3085	4424;4425;4426;4427	4424		4	9606
YEELQQTAGR	Unmodified	1193.5677	0.56766543	13	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					15.257	15.257	2	1.0024E-110	6198	DP1141_1	218.06	153.02		+	37398000	1795	13	1692	3086	4428	4428		1	9606
YEELQVTVGR	Unmodified	1192.6088	0.60880197	15	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1.5	0.5	1	1				17.831	17.831	2	3.7657999999999998E-65	10398	DP1141_1	183.65	106.36		+	234180000	1796	15	1693	3087;3088	4429;4430	4429		1	9606
YEITFTLPPVHR	Unmodified	1471.7823	0.78234966	421	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					1	19.9	19.9	3	0.035126	14260	DP1141_5	59.57	36.101			19369000	1797	421	1694	3089	4431	4431		1	9606
YELGRPAANTK	Unmodified	1218.6357	0.63568542	228	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	1	5	0					1	14.509	14.509	3	0.028462	5309	DP1141_5	93.561	70.875			43892000	1798	228	1695	3090	4432	4432		0	9606
YELISETGGSHDKR	Unmodified	1590.7638	0.76379906	299;401	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	0	1	4	0				1		14.999	14.999	3	0.0038765	6923	DP1141_4	106.58	73.305			23137000	1799	299;401	1696	3091	4433	4433		1	9606
YENEVALR	Unmodified	992.49271	0.49270958	12	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2	0		1				16.024	16.024	2	0.0088137	7602	DP1141_2	120.62	69.918		+	42682000	1800	12	1697	3092	4434	4434		1	9606
YFPTQALNFAFK	Unmodified	1445.7343	0.73433683	71	P12236;P12235;P05141;Q9H0C2	SLC25A6;SLC25A4;SLC25A5;SLC25A31	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	yes	no	0	0	0	1	0	1					22.131	22.131	2	0.00067339	17075	DP1141_1	120.31	79.189			55159000	1801	71	1698	3093	4435	4435		1	9606
YFQIGTIVDNPADFYHSR	Unmodified	2142.0171	0.017053633	340	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2	0		1				21.08	21.08	3	3.3448E-09	15609	DP1141_2	141.1	117.76			4123400	1802	340	1699	3094	4436	4436		1	9606
YGALALQEIFDGIQPK	Unmodified	1761.9301	0.93013611	211	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				23.363	23.363	2	2.9124E-11	18859	DP1141_2	167.84	119.73			0	1803	211	1700	3095	4437	4437		1	9606
YGDGGSTFQSTTGHCVHMR	Oxidation (M)	2112.8742	0.87417092	149	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3.67	0.471			1	2		14.731	14.731	3;4	0.011364	5721	DP1141_3	63.614	37.657			61635000	1804	149	1701	3096;3097;3098	4438;4439;4440	4438	146	3	9606
YGVNPGPIVGTTR	Unmodified	1329.7041	0.70409934	178	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			17.604	17.604	2	0.037125	9879	DP1141_3	99.343	57.916			37147000	1805	178	1702	3099	4441	4441		0	9606
YHTINGHNAEVR	Unmodified	1409.68	0.68000985	128	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		12.729	12.729	3	4.6356E-15	3470	DP1141_4	149.49	100.04			12929000	1806	128	1703	3100	4442	4442		0	9606
YIPIQYVLSR	Unmodified	1250.7023	0.70230842	8	CON__P02668			yes	yes	0	0	0	3	0			1			21.005	21.005	2	0.00043336	15269	DP1141_3	138.98	95.729		+	10821000	1807	8	1704	3101	4443	4443		0	
YKDDPVDLR	Unmodified	1119.556	0.55603811	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				15.724	15.724	2	2.1837E-42	7222	DP1141_2	190.62	110.91			43093000	1808	482	1705	3102	4444	4444		1	9606
YKITDIIGKEEGIGPENLR	Unmodified	2144.1477	0.14773345	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	2					19.709	19.709	3;4	0.0016665	13444	DP1141_1	86.213	64.537			58136000	1809	302	1706	3103;3104	4445;4446	4446		1	9606
YKPLNTTPNATK	Unmodified	1346.7194	0.71941505	396	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				14.152	14.152	3	0.024921	4906	DP1141_2	86.288	43.312			11721000	1810	396	1707	3105	4447	4447		0	9606
YLAEVAAGDDKK	Unmodified	1278.6456	0.6455814	253	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	1	5	0					2	14.894	14.894	2;3	0.0029127	5884	DP1141_5	119.53	53.258			2107900	1811	253	1708	3106;3107	4448;4449	4449		2	9606
YLGYLEQLLR	Unmodified	1266.6972	0.69722304	6	CON__P02662			yes	yes	0	0	0	3	1		1		1		22.775	22.775	2	0.0021377	19016	DP1141_4	124.98	97.729		+	36573000	1812	6	1709	3108;3109	4450;4451	4451		2	
YLMEEDEDAYKK	Oxidation (M)	1548.6654	0.66539015	185	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	1	4	0				1		15.201	15.201	3	0.001198	7273	DP1141_4	110.84	110.84			131570000	1813	185	1710	3110	4452	4452	176	0	9606
YLSSVSSQETQGGPLAPMTGTIEK	Unmodified	2480.2105	0.21046965	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			19.62	19.62	2	1.7795E-12	13380	DP1141_1	176.42	130.14			55858000	1814	399	1711	3111;3112	4453;4454	4453		1	9606
YLSSVSSQETQGGPLAPMTGTIEK	Oxidation (M)	2496.2054	0.20538427	399	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			18.204	18.204	2	6.7842E-94	11068	DP1141_3	189.04	149.88			43967000	1815	399	1711	3113	4455	4455	343	1	9606
YLTVAAIFR	Unmodified	1052.6019	0.6018661	312	Q9BVA1;Q13885	TUBB2B;TUBB2A	Tubulin beta-2B chain;Tubulin beta-2A chain	yes	no	0	0	0	4	1			1		1	21.42	21.42	2	3.5045E-36	15785	DP1141_3	170.73	95.415			31626000	1816	312	1712	3114;3115	4456;4457	4456		0	9606
YLTVAAVFR	Unmodified	1038.5862	0.58621603	81;258	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	4	0.816			1	1	1	20.448	20.448	2	1.4546999999999998E-22	14439	DP1141_3	173.59	124.83			291670000	1817	81;258	1713	3116;3117;3118	4458;4459;4460;4461;4462;4463	4459		6	9606
YLYLTPQDYK	Unmodified	1302.6496	0.64960415	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.418	19.418	2	9.056E-34	12985	DP1141_1	209.87	153.75			403510000	1818	302	1714	3119;3120	4464;4465;4466	4465		2	9606
YLYLTPQDYKR	Unmodified	1458.7507	0.75071518	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					18.158	18.158	2;3	2.9027E-34	10914	DP1141_1	181.41	136.65			147940000	1819	302	1715	3121;3122	4467;4468;4469;4470	4470		4	9606
YMITDIIGKDDGLGVENLR	Oxidation (M)	2137.0725	0.072519601	31	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	1	1	0	1					20.77	20.77	3	0.0016653	15175	DP1141_1	75.743	51.633			2956800	1820	31	1716	3123	4471	4471	29	0	9606
YPENFFLLR	Unmodified	1197.6182	0.61824444	164;225;226	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.25	1.48	1		1	1	1	21.712	21.712	2	0.0074639	16841	DP1141_5	128.57	66.02			651570000	1821	164;225;226	1717	3124;3125;3126;3127	4472;4473;4474;4475;4476;4477;4478;4479;4480;4481	4480		10	9606
YPMAVGLNK	Oxidation (M)	1007.511	0.51100218	488	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	0	5	0					1	16.065	16.065	2	0.0068811	7872	DP1141_5	114.72	56.554			101660000	1822	488	1718	3128	4482;4483	4483	387	2	9606
YPMAVGLNK	Unmodified	991.51609	0.51608756	488	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	5	0					1	17.312	17.312	2	0.023755	10011	DP1141_5	89.369	38.737			72797000	1823	488	1718	3129	4484	4484		1	9606
YQAVTATLEEK	Unmodified	1251.6347	0.63468237	173	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	3	2	1				1	16.868	16.868	2	9.9348E-11	8938	DP1141_1	159.79	137.3			349140000	1824	173	1719	3130;3131	4485;4486;4487;4488	4485		4	9606
YQILPLHSQIPR	Unmodified	1463.8249	0.82488317	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					18.51	18.51	3	0.036228	11835	DP1141_1	62.338	43.381			28390000	1825	288	1720	3132	4489	4489		1	9606
YQKSTELLIR	Unmodified	1249.703	0.7030367	259;345	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	1	5	0					2	16.315	16.315	2;3	0.0007038	8223	DP1141_5	146.11	112.73			122790000	1826	259;345	1721	3133;3134	4490;4491;4492	4491		3	9606
YQYGGLNSGRPVTPPR	Unmodified	1760.8958	0.89581629	226	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	1	4	0				1		16.553	16.553	3	0.031847	9372	DP1141_4	64.675	46.284			386350000	1827	226	1722	3135	4493	4493		0	9606
YRPGTVALR	Unmodified	1031.5876	0.58761301	259;345	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	1	5	0					1	15.075	15.075	1	4.3194E-05	6277	DP1141_5	136.27	82.917			341520000	1828	259;345	1723	3136	4494	4494		0	9606
YSGELSGIR	Unmodified	980.49271	0.49270958	442	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3	0			1			16.67	16.67	2	0.023825	8441	DP1141_3	91.853	52.635			30471000	1829	442	1724	3137	4495;4496	4496		2	9606
YSGPAPPPNR	Unmodified	1054.5196	0.51959303	412	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3.5	0.5			1	1		14.387	14.387	2	0.0042938	4908	DP1141_3	116.9	77.651			37346000	1830	412	1725	3138;3139	4497;4498	4497		2	9606
YSLDPENPTK	Unmodified	1162.5506	0.55061839	121	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	17.025	17.025	2	0.0026023	9371	DP1141_5	123.35	93.037			94162000	1831	121	1726	3140	4499	4499		1	9606
YSLQYYMGLAEELVR	Oxidation (M)	1849.892	0.89203604	101	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1.5	0.5	1	1				23.087	23.087	2	1.9665E-38	18304	DP1141_2	171.62	125.85			40869000	1832	101	1727	3141;3142	4500;4501;4502;4503	4502	125	4	9606
YSMYNSVSQKLMAK	2 Oxidation (M)	1680.7851	0.78512813	365	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	2	1	4	0				1		19.396	19.396	2	0.019989	13938	DP1141_4	59.067	23.415			18605000	1833	365	1728	3143	4504	4504	312;313	1	9606
YSNDPVVASLAQDIFK	Unmodified	1765.8887	0.88866522	395	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	2	0		1				23.112	23.112	2	0.0015242	18418	DP1141_2	124.47	78.063			9621600	1834	395	1729	3144	4505;4506	4505		2	9606
YSPSQNSPIHHIPSR	Unmodified	1718.8489	0.84886609	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		2				15.119	15.119	3;4	1.0954E-05	6325	DP1141_2	136.33	94.296			90931000	1835	456	1730	3145;3146	4507;4508;4509	4508		2	9606
YSPSQNSPIHHIPSRR	Unmodified	1874.95	0.94997712	456	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		1				14.62	14.62	4	0.0051568	5473	DP1141_2	87.498	72.291			15802000	1836	456	1731	3147	4510	4510		0	9606
YSQVLANGLDNK	Unmodified	1320.6674	0.66737948	233	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	17.123	17.123	2	0.023777	9690	DP1141_5	108.43	62.43			69981000	1837	233	1732	3148	4511	4511		1	9606
YSVDIPLDK	Unmodified	1048.5441	0.54407645	222	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	18.614	18.614	2	3.7474E-05	12072	DP1141_5	148.99	104.87			400670000	1838	222	1733	3149	4512;4513	4512		2	9606
YTHAANTVVYSSNK	Unmodified	1553.7474	0.74742071	352	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	1	0	1					14.412	14.412	3	0.00039357	4901	DP1141_1	91.969	68.79			20464000	1839	352	1734	3150	4514;4515	4515		2	9606
YVASYLLAALGGNSSPSAK	Unmodified	1867.968	0.96797818	75	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					2	22.193	22.193	2;3	4.3618E-169	17534	DP1141_5	225.72	200.25			126560000	1840	75	1735	3151;3152	4516;4517;4518	4516		3	9606
YYLHDDREGEGSDK	Unmodified	1682.7172	0.7172428	482	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				14.339	14.339	3	0.037923	5014	DP1141_2	69.03	39.901			10024000	1841	482	1736	3153	4519	4519		0	9606
YYPTEDVPR	Unmodified	1138.5295	0.52948901	276	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.741	16.741	2	0.023776	9710	DP1141_4	89.296	57.874			218750000	1842	276	1737	3154	4520	4520		1	9606
