Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Intensity	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAELSLLEK	Acetyl (Protein N-term)	1156.634	0.63395409	45	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	1	0	0	5	0					1	22.507	22.507	2	7.7185E-10	18209	DP1141_20	148.69	89.341			21449000	0	45	0	0	0;1	1		2	9606
AAAVAAAGAGEPQSPDELLPK	Acetyl (Protein N-term)	2004.0164	0.016384931	431	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	1	0	0	5	0					1	21.209	21.209	2	1.7655E-25	16453	DP1141_20	160.18	116.5			12171000	1	431	1	1	2	2		1	9606
AADTQVSETLKR	Acetyl (Protein N-term)	1359.6994	0.69940789	389	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	1	2	0		1				16.541	16.541	2	9.7233E-05	8492	DP1141_17	156.16	81.241			14502000	2	389	2	2	3	3		0	9606
AAEDELQLPR	Acetyl (Protein N-term)	1182.5881	0.58806652	254	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	1	0	0	4	0				2		20.131	20.131	2	0.0030508	14032	DP1141_19	109.48	54.367			0	3	254	3	3;4	4;5	4		2	9606
AAETQTLNFGPEWLR	Acetyl (Protein N-term)	1773.8686	0.86859848	357	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	1	0	0	2.5	0.5		1	1			23.803	23.803	2	6.785E-16	19283	DP1141_18	191.29	117.85			4526900	4	357	4	5;6	6;7	7		2	9606
AAEVLVYGAPPGR	Unmodified	1298.6983	0.69828568	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3.5	1.12		1	1	1	1	17.901	17.901	2	1.6701E-30	10411	DP1141_18	169.76	104.04			886780000	5	343	5	7;8;9;10	8;9;10;11;12;13;14;15;16;17;18;19;20	14		12	9606
AAFAPFGR	Unmodified	835.43407	0.43407249	145	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	0	4	0				1		18.429	18.429	2	8.3902E-11	11644	DP1141_19	137.44	88.229			40295000	6	145	6	11	21	21		1	9606
AAGVEAAAEVAATEIK	Acetyl (Protein N-term)	1541.7937	0.7937022	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	3.5	0.5			1	1		23.141	23.141	2	3.2546E-276	18353	DP1141_18	259.75	209.3			18352000	7	194	7	12;13	22;23;24;25	22		4	9606
AAGVNVEPFWPGLFAK	Unmodified	1701.8879	0.88787736	83	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	23.041	23.041	2	1.9982E-06	19072	DP1141_20	145.23	119.11			94443000	8	83	8	14	26;27	26		2	9606
AAIDWFDGK	Unmodified	1021.4869	0.48689592	153;391	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	no	no	0	0	0	4.5	0.5				1	1	20.317	20.317	2	0.0011241	14962	DP1141_20	116.25	29.069			133690000	9	153;391	9	15;16	28;29	29		2	9606
AAIDWFDGKEFSGNPIK	Unmodified	1893.9261	0.92611336	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	4	1			2		2	20.917	20.917	2;3	8.773000000000001E-191	15754	DP1141_20	236.42	189.46			1164100000	10	153	10	17;18;19;20	30;31;32;33;34;35;36;37	36		8	9606
AALVLEDGSVLR	Acetyl (Protein N-term)	1283.7085	0.70851601	143	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	1	0	0	1	0	1					23.329	23.329	2	0.014338	18778	DP1141_16	71.349	8.2736			23470000	11	143	11	21	38	38		1	9606
AAMEALVVEVTK	Oxidation (M)	1275.6744	0.67443869	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	1	0	1					17.843	17.843	2	9.548E-09	10295	DP1141_16	149.33	87.567			35846000	12	288	12	22	39	39	251	1	9606
AASADSTTEGTPADGFTVLSTK	Unmodified	2126.0015	0.0015227276	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		19.028	19.028	2	0.0026477	12130	DP1141_19	103.66	74.442			445440000	13	56	13	23	40	40		1	9606
AASDIAMTELPPTHPIR	Oxidation (M)	1834.9247	0.92473315	222	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	0	4	0				1		16.977	16.977	3	0.0089116	9257	DP1141_19	73.707	51.867			30895000	14	222	14	24	41;42	42	210	2	9606
AATASAGAGGIDGKPR	Acetyl (Protein N-term)	1440.7321	0.732105	274	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	2.5	1.5	1			1		15.358	15.358	2	1.0016E-191	6261	DP1141_16	213.84	115.8			64185000	15	274	15	25;26	43;44;45;46	44		3	9606
AATGEEVSAEDLGGADLHCR	Unmodified	2056.912	0.91199621	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		17.209	17.209	3	4.3936E-160	9265	DP1141_18	224.64	175.29			2359800000	16	427	16	27;28;29	47;48;49;50;51	48		4	9606
AATGEEVSAEDLGGADLHCRK	Unmodified	2185.007	0.0069592315	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			16.418	16.418	3	0.0096311	7785	DP1141_18	67.168	34.422			16357000	17	427	17	30	52	52		1	9606
AAVGQESPGGLEAGNAK	Unmodified	1554.7638	0.76379906	341	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				15.488	15.488	2	0.032183	6560	DP1141_17	132.14	99.104			0	18	341	18	31	53	53		1	9606
AAYFGIYDTAK	Unmodified	1218.5921	0.59208927	80	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	2.5	1.5	1			1		19.329	19.329	2	9.7655E-09	12634	DP1141_16	153.24	132.96			13253000	19	80	19	32;33	54;55	54		1	9606
ACTELGIR	Unmodified	918.4593	0.45930096	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				16.058	16.058	2	0.00013865	7580	DP1141_17	148.21	23.832			162260000	20	112	20	34	56	56		0	9606
ADAWDMQEFITHMYIK	Oxidation (M)	2013.8965	0.89646949	363	Q7RTX7	CATSPER4	Cation channel sperm-associated protein 4	yes	yes	0	1	0	2	0		1				19.037	19.037	3	0.036545	12329	DP1141_17	50.843	25.02			16312000	21	363	21	35	57	57	329	1	9606
ADEAYLIGR	Unmodified	1006.5084	0.50835964	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.63	1		1		1	17.813	17.813	2	1.0253E-152	10214	DP1141_16	231.97	154.23			65635000	22	112	22	36;37;38	58;59;60;61	58		4	9606
ADFAQACQDAGVR	Unmodified	1407.6201	0.62011171	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					16.706	16.706	2	2.965E-05	8515	DP1141_16	144.17	101.98			495310000	23	112	23	39	62	62		1	9606
ADGQVAELLLR	Acetyl (Protein N-term)	1225.6667	0.6666512	454	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	1	0	0	3	0			1			23.267	23.267	2	1.5809E-96	18492	DP1141_18	207.83	123.22			11514000	24	454	24	40	63;64	64		2	9606
ADKMDMSLDDIIK	Acetyl (Protein N-term);2 Oxidation (M)	1567.711	0.71096013	370	Q86V81	ALYREF	THO complex subunit 4	yes	yes	1	2	1	4	0				1		19.028	19.028	2	0.025515	12474	DP1141_19	61.344	26.166			18941000	25	370	25	41	65	65	332;333	0	9606
ADLDKLNIDSIIQR	Acetyl (Protein N-term)	1654.889	0.88899957	155	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	4	0				1		22.029	22.029	2	0.0013377	16862	DP1141_19	116.74	67.271			172060000	26	155	26	42	66	66		1	9606
ADLEMQIESLTEELAYLKK	Oxidation (M)	2239.1294	0.12936578	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	1	1	0	1					23.764	23.764	3	1.461E-09	19348	DP1141_16	145.82	109.04		+	7785100	27	25	27	43	67;68	67	11	2	9606
ADSVLIIETVPGFPPAPPAPGAAQIR	Unmodified	2583.4061	0.40607341	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3.33	1.15		3	2	2	2	22.599	22.599	2;3	3.6474E-222	17484	DP1141_17	281.6	237.47			239160000	28	343	28	44;45;46;47;48;49;50;51;52	69;70;71;72;73;74;75;76;77;78;79;80;81;82;83;84;85;86;87;88	71		20	9606
ADTQTYQPYNKDWIK	Unmodified	1869.8897	0.88972785	263	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	1	5	0					1	17.835	17.835	3	0.00020178	10944	DP1141_20	139.64	87.908			257720000	29	263	29	53	89	89		1	9606
AEAEAQAEELSFPR	Unmodified	1546.7264	0.72635092	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.707	1	2	1			18.57	18.57	2;3	0	11654	DP1141_17	303.71	219.09			1041999999.9999999	30	112	30	54;55;56;57	90;91;92;93;94;95;96;97	93		8	9606
AEAGVPAEFSIWTR	Unmodified	1532.7623	0.7623425	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				21.404	21.404	2	0.025841	15773	DP1141_17	76.843	29.138			14538000	31	131	31	58	98	98		1	9606
AEEGIAAGGVMDVNTALQEVLK	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	138	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	5	0					1	24.809	24.809	2	1.3532000000000002E-25	21491	DP1141_20	156.49	117.47			3174700	32	138	32	59	99	99	146	1	9606
AEFTVETR	Unmodified	951.46616	0.46616048	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					16.205	16.205	2	0.029529	7622	DP1141_16	98.523	46.951			0	33	131	33	60	100	100		1	9606
AEFVEVTK	Unmodified	921.48075	0.48074791	22	CON__P02769			yes	yes	0	0	0	5	0					1	16.243	16.243	2	2.1999E-54	8348	DP1141_20	186.09	100.73		+	232220000	34	22	34	61	101;102	101		2	
AEKTLTIFMEYMPGGSVK	Oxidation (M)	2016.99	0.99003553	409	Q99759	MAP3K3	Mitogen-activated protein kinase kinase kinase 3	yes	yes	0	1	1	5	0					1	21.606	21.606	3	0.021764	16859	DP1141_20	65.528	31.655			0	35	409	35	62	103	103	376;377	1	9606
AEPVEVVAPR	Unmodified	1065.5819	0.58185893	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2.5	0.5		1	1			16.238	16.238	2	5.7779E-32	7894	DP1141_17	176.44	134.05			1795499999.9999998	36	101	36	63;64	104;105;106;107	105		4	9606
AEPYCSVLPGFTFIQHLPLSER	Unmodified	2560.2784	0.27843005	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	1	0	1					22.894	22.894	3	0.024224	18145	DP1141_16	54.457	31.164			11251000	37	417	37	65	108	108		1	9606
AESSDKLYR	Acetyl (Protein N-term)	1109.5353	0.53530267	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	1	2.5	0.5		1	1			15.725	15.725	2	8.097100000000001E-114	7017	DP1141_17	219.25	136.58			448610000	38	101	38	66;67	109;110	109		1	9606
AEVQVLVLDGR	Acetyl (Protein N-term)	1239.6823	0.68230126	163	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	5	0					1	22.495	22.495	2	8.996E-22	18197	DP1141_20	182.64	92.269			60624000	39	163	39	68	111;112;113;114	113		4	9606
AFGYYGPLR	Unmodified	1042.5236	0.52361577	264	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	5	0					1	19.172	19.172	2	1.0298E-05	13225	DP1141_20	124.89	86.069			25951000	40	264	40	69	115	115		1	9606
AFHNEAQVNPER	Unmodified	1410.664	0.66402543	124	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	2	1	1		1			14.26	14.26	3	1.1866E-05	4627	DP1141_16	129.34	80.042			27001000	41	124	41	70;71	116;117;118	116		3	9606
AFITNIPFDVK	Unmodified	1263.6863	0.68632401	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			21.134	21.134	2	1.2840000000000002E-41	15287	DP1141_18	183.43	129.68			41027000	42	194	42	72	119;120	119		2	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	Unmodified	2751.4596	0.45956554	85	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				2		21.764	21.764	2;3	1.8496E-25	16565	DP1141_19	131.78	118.47			45152000	43	85	43	73;74	121;122;123	121		3	9606
AFVAIGDYNGHVGLGVK	Unmodified	1715.8995	0.89950468	116	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		19.228	19.228	3	0.02258	12808	DP1141_19	73.022	37.131			44905000	44	116	44	75	124	124		0	9606
AFYGDTLVTGFAR	Unmodified	1416.7038	0.70376498	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			20.834	20.834	2	1.8509999999999998E-135	14828	DP1141_18	221.68	195.17			1418400000	45	427	45	76;77	125;126;127;128	127		4	9606
AFYPEEISSMVLTK	Oxidation (M)	1629.796	0.79601039	105	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	1	0	3.75	0.829			2	1	1	20.267	20.267	2;3	2.3741E-09	14084	DP1141_18	147.7	106.32			322920000	46	105	46	78;79;80;81	129;130;131;132;133;134;135;136	133	98	8	9606
AFYPEEISSMVLTK	Unmodified	1613.8011	0.80109577	105	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	0	0	3.5	0.5			1	1		21.734	21.734	2	7.9971E-07	16160	DP1141_18	147.28	99.189			149060000	47	105	46	82;83	137;138	137		2	9606
AGDWQCPNPGCGNQNFAWR	Unmodified	2233.917	0.91703879	270	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	5	0					1	19.659	19.659	2	5.5331E-176	13968	DP1141_20	234.79	208.08			37057000	48	270	47	84	139;140	139		2	9606
AGGEAGVTLGQPHLSR	Acetyl (Protein N-term)	1590.8114	0.81141795	165	Q2VIR3;P41091	EIF2S3L;EIF2S3	Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3	yes	no	1	0	0	3	0			1			17.991	17.991	2	6.5814E-16	10490	DP1141_18	148.96	116.46			0	49	165	48	85	141	141		1	9606
AGLQFPVGR	Unmodified	943.52395	0.52395013	103;338;77;117;102	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;Q71UI9;P0C0S5;P16104;Q96QV6;Q8IUE6	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;H2AFV;H2AFZ;H2AFX;HIST1H2AA;HIST2H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A.V;Histone H2A.Z;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B	no	no	0	0	0	3	1.41	1	1	1	1	1	18.458	18.458	2	3.9051E-12	12033	DP1141_20	152.63	78.659			17238000000	50	77;103;338;102;117	49	86;87;88;89;90	142;143;144;145;146;147	146		5	9606
AGPGSLELCGLPSQK	Unmodified	1512.7606	0.76062794	317	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0			1			18.734	18.734	2	1.2611E-07	11514	DP1141_18	122.18	77.198			17152000	51	317	50	91	148	148		0	9606
AGQSAAGAAPGGGVDTR	Unmodified	1441.691	0.69096847	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				14.074	14.074	2	0.015702	4346	DP1141_16	86.288	57.561			5789400	52	131	51	92;93	149;150	149		2	9606
AGVIFPVGR	Unmodified	914.53379	0.53378653	56;437	O75367;Q9P0M6	H2AFY;H2AFY2	Core histone macro-H2A.1;Core histone macro-H2A.2	no	no	0	0	0	4.5	0.5				1	1	18.601	18.601	2	1.8486E-05	12228	DP1141_20	124.37	62.376			1017799999.9999999	53	56;437	52	94;95	151;152;153	152		2	9606
AHQVVEDGYEFFAK	Unmodified	1638.7678	0.7678218	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	5	0					1	18.573	18.573	3	0.021054	12264	DP1141_20	69.258	44.552			34917000	54	218;155	53	96	154	154		1	9606
AHQVVEDGYEFFAKR	Unmodified	1794.8689	0.86893283	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	3	0			1			18.334	18.334	3	0.0014361	11112	DP1141_18	147.51	113.12			13629000	55	218;155	54	97	155	155		1	9606
AHSIQIMKVEEIAASK	Oxidation (M)	1769.9346	0.93456956	271	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	1	1	5	0					1	16.835	16.835	3	0.0060381	9365	DP1141_20	92.427	70.613			27581000	56	271	55	98	156	156	242	1	9606
AIAYLFPSGLFEK	Unmodified	1454.781	0.78095267	258	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	4	0				1		22.901	22.901	2	0.0036812	18194	DP1141_19	127.51	90.821			10568000	57	258	56	99	157	157		1	9606
AIEALHGHELRPGR	Unmodified	1554.8379	0.83790748	403	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	3	0			1			14.818	14.818	3	3.5693E-06	5538	DP1141_18	128.36	92.626			38704000	58	403	57	100	158	158		0	9606
AIEPPPLDAVIEAEHTLR	Unmodified	1970.0473	0.047291129	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					21.334	21.334	3	0.0012581	15831	DP1141_16	118.53	92.382			61355000	59	288	58	101	159;160	160		2	9606
AIEQSIEQEEGLNR	Unmodified	1614.7849	0.78492843	212	P61266	STX1B	Syntaxin-1B	yes	yes	0	0	0	1	0	1					17.905	17.905	2	0	10434	DP1141_16	272.03	218.27			0	60	212	59	102	161	161		1	9606
AIETTDIISR	Unmodified	1117.5979	0.59790293	400	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	4	0				1		17.281	17.281	2	0.015125	9635	DP1141_19	113.62	48.37			0	61	400	60	103	162	162		1	9606
AIGIGAYLVR	Unmodified	1031.6128	0.61276513	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2	0		1				20.205	20.205	2	0.019592	13954	DP1141_17	91.626	28.909			13099000	62	302;39	61	104	163;164	163		2	9606
AIKVEQATKPSFESGR	Unmodified	1746.9264	0.92644771	158	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	2	4	0				1		15.19	15.19	4	0.011188	6394	DP1141_19	77.726	62.888			47500000	63	158	62	105	165	165		0	9606
AILVDLEPGTMDSVR	Oxidation (M)	1630.8236	0.82362212	93;308	P07437;Q13885;Q9BVA1	TUBB;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3.5	1.12		1	1	1	1	19.654	19.654	2	3.2734999999999997E-43	13339	DP1141_19	179.94	118.34			797000000	64	93;308	63	106;107;108;109	166;167;168;169;170	168	68	5	9606
AILVDLEPGTMDSVR	Unmodified	1614.8287	0.8287075	93;308	P07437;Q13885;Q9BVA1	TUBB;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	3	0			1			20.633	20.633	2	5.6631E-162	14550	DP1141_18	231.05	135.57			264550000	65	93;308	63	110	171;172	171		2	9606
AINTLNGLR	Unmodified	970.55598	0.55597854	332	Q15717;Q12926;P26378	ELAVL1;ELAVL2;ELAVL4	ELAV-like protein 1;ELAV-like protein 2;ELAV-like protein 4	yes	no	0	0	0	4	0				1		17.034	17.034	2	0.0075457	9229	DP1141_19	104.44	6.835			31983000	66	332	64	111	173;174	173		2	9606
AISSYFVSTMSSSIK	Unmodified	1606.7913	0.79125936	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		20.731	20.731	2	9.8384E-07	14876	DP1141_19	117.79	77.875			151130000	67	56	65	112	175	175		0	9606
AIVICPTDEDLKDR	Unmodified	1643.8189	0.8188711	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	1	3	0			1			17.334	17.334	3	3.7354E-10	9484	DP1141_18	165.35	127.05			274380000	68	417	66	113	176	176		0	9606
ALAAAGYDVEKNNSR	Unmodified	1577.7798	0.77978347	118	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	1	4	0				2		15.288	15.288	2;3	6.2844E-56	6575	DP1141_19	185.2	103.93			199550000	69	118	67	114;115	177;178	177		2	9606
ALAAVPSAGSVQR	Unmodified	1225.6779	0.67788459	312	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	2	0		1				16.358	16.358	2	0.0016541	7921	DP1141_17	121.5	63.069			23871000	70	312	68	116	179	179		1	9606
ALAVSDLNR	Unmodified	957.52434	0.52434406	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			16.621	16.621	2	9.6332E-42	8345	DP1141_16	181.81	79.292			1738499999.9999998	71	112	69	117;118;119	180;181;182;183	181		3	9606
ALEEANADLEVK	Unmodified	1300.6511	0.65106071	15;23	CON__P02533;P02533;CON__P19012;P19012;CON__Q6IFX2;CON__P08779;P08779	KRT14;KRT15;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16	no	no	0	0	0	1	0	1					16.976	16.976	2	0.00047018	9029	DP1141_16	137.95	91.825		+	97310000	72	15;23	70	120	184	184		1	9606
ALEESNYELEGK	Unmodified	1380.6409	0.64088996	25	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.75	1.48	1	1	1		1	16.9	16.9	2	4.6906E-81	8913	DP1141_17	202.05	123.9		+	2307700000	73	25	71	121;122;123;124	185;186;187;188;189;190;191;192	187		7	9606
ALMDMMGGVLEVK	3 Oxidation (M)	1440.6663	0.66625855	379	Q8NDM7	CFAP43	Cilia- and flagella-associated protein 43	yes	yes	0	3	0	1	0	1					16.877	16.877	2	0.027483	8695	DP1141_16	48.602	13.909			11420000	74	379	72	125	193	193	342;343;344	0	9606
ALPNNTSSSPQPK	Unmodified	1339.6732	0.67319314	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	2.67	1.25	1		1	1		13.838	13.838	2	0.00024785	4008	DP1141_18	134.23	88.547			33266000	75	76	73	126;127;128	194;195;196;197;198	195		5	9606
ALTVPELTQQMFDAK	Unmodified	1690.86	0.86000763	253	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	3	0			1			21.905	21.905	2	1.0016E-119	16415	DP1141_18	208.33	144.64			0	76	253	74	129	199	199		1	9606
ALTVPELTQQMFDSK	Oxidation (M)	1722.8498	0.84983687	308	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	1	0	3	0			1			19.734	19.734	2	0.0020658	13140	DP1141_18	108.72	74.83			34101000	77	308	75	130	200	200	300	1	9606
ALTVPELTQQVFDAK	Unmodified	1658.8879	0.88793694	93	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	2.6	1.02	1	1	2	1		21.64	21.64	2;3	0.00062268	16120	DP1141_19	138.45	90.555			836780000	78	93	76	131;132;133;134;135	201;202;203;204;205;206;207;208	207		7	9606
ALVDGPCTQVR	Unmodified	1214.6078	0.60775611	189	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	16.297	16.297	2	0.00048776	8463	DP1141_20	117.81	77.744			109710000	79	189	77	136	209;210	210		2	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	Unmodified	3135.3979	0.39788908	284	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		21.477	21.477	3	1.4939E-13	16118	DP1141_19	123.54	109.28			19674000	80	284	78	137	211;212	211		2	9606
ALVNQLHER	Unmodified	1078.5883	0.5883413	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			14.978	14.978	2	1.5517E-25	5745	DP1141_18	187	142.55			133070000	81	427	79	138;139	213;214	214		1	9606
AMGIMNSFVNDIFER	2 Oxidation (M)	1774.8018	0.80184082	206;136	Q16778;P33778;P23527;P06899;Q8N257;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	2	0	4.94	0.235				1	16	28.723	28.723	2;3	1.3355E-140	16843	DP1141_20	214.04	176.33			249060000	82	136;206	80	140;141;142;143;144;145;146;147;148;149;150;151;152;153;154;155;156	215;216;217;218;219;220;221;222;223;224;225;226;227;228;229;230;231;232;233;234;235;236;237;238;239;240;241;242;243	234	144;145	29	9606
AMGIMNSFVNDIFER	Oxidation (M)	1758.8069	0.8069262	206;136	Q16778;P33778;P23527;P06899;Q8N257;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	1	0	5	0					4	22.555	22.555	2;3	1.1707E-139	17853	DP1141_20	223.87	187.35			5837199999.999999	83	136;206	80	157;158;159;160	244;245;246;247;248;249;250	245	144;145	7	9606
AMGIMNSFVNDIFER	Unmodified	1742.812	0.81201158	206;136	Q16778;P33778;P23527;P06899;Q8N257;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	0	5	0					1	23.902	23.902	2	5.9199E-101	20279	DP1141_20	236.69	187.39			115590000	84	136;206	80	161	251;252	251		2	9606
AMTGVEQWPYR	Oxidation (M)	1352.6183	0.6183208	185	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	0	3	0			1			18.234	18.234	2	0.019435	10759	DP1141_18	99.136	55.501			7924900	85	185	81	162	253	253	180	0	9606
AMVEYEIDLQK	Oxidation (M)	1353.6486	0.64861787	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2	0		1				18.405	18.405	2	7.5948E-05	11229	DP1141_17	126.24	71.52			116970000	86	101	82	163	254	254	84	1	9606
ANPLSLDSAR	Unmodified	1042.5407	0.5407224	41	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	0	1	0	1					17.039	17.039	2	0.017449	9083	DP1141_16	106.68	32.708			16797000	87	41	83	164	255	255		0	9606
ANTFVAELK	Unmodified	991.53385	0.53384611	164	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	3	0			1			17.856	17.856	2	0.015677	10277	DP1141_18	105.1	56.346			0	88	164	84	165	256	256		1	9606
APAMFNIR	Oxidation (M)	934.46947	0.46947171	211	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4.5	0.5				1	1	16.674	16.674	2	0.0010276	8822	DP1141_19	122.15	72.035			198810000	89	211	85	166;167	257;258	257	203	2	9606
APAPKPELIAAEK	Unmodified	1333.7606	0.76055158	462	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	1	3	0			1			15.469	15.469	3	2.6957E-08	6440	DP1141_18	137.62	110.19			0	90	462	86	168	259	259		1	9606
APIRPDIVNFVHTNLR	Unmodified	1861.0323	0.032250187	154	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3.75	0.829			2	1	1	19.32	19.32	3;4	1.0943E-123	12521	DP1141_18	218.2	182.44			251930000	91	154	87	169;170;171;172	260;261;262;263;264	260		4	9606
APKPDGPGGGPGGSHMGGNYGDDR	Oxidation (M)	2267.9614	0.96140602	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3.62	0.992		1	3	2	2	12.817	12.817	2;3;4	8.6819E-13	2696	DP1141_18	129.89	108.12			4728600000	92	153	88	173;174;175;176;177;178;179;180	265;266;267;268;269;270;271;272;273;274;275;276;277	267	160	13	9606
APKPDGPGGGPGGSHMGGNYGDDR	Unmodified	2251.9665	0.9664914	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3.62	0.992		1	3	2	2	14.426	14.426	2;3;4	6.9461E-93	5450	DP1141_20	196.95	174.51			1156500000	93	153	88	181;182;183;184;185;186;187;188	278;279;280;281;282;283;284;285;286;287;288;289;290;291;292;293	292		16	9606
APKPDGPGGGPGGSHMGGNYGDDRR	Oxidation (M)	2424.0625	0.062517051	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	2	3	0			1			13.371	13.371	4	0.025935	3405	DP1141_18	40.88	24.834			1852400	94	153	89	189	294	294	160	0	9606
APKPDGPGGGPGGSHMGGNYGDDRR	Unmodified	2408.0676	0.067602428	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	2	5	0					2	13.97	13.97	4;5	0.0095925	4769	DP1141_20	44.759	18.842			26776000	95	153	89	190;191	295;296;297	296		3	9606
APQQQPPPQQPPPPQPPPQQPPPPPSYSPAR	Unmodified	3327.6789	0.67889422	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	3	0.707		1	2	1		17.389	17.389	3;4	2.2237E-196	9440	DP1141_18	225.13	191.29			90945000	96	417	90	192;193;194;195	298;299;300;301;302;303	300		5	9606
APSTYGGGLSVSSR	Unmodified	1337.6575	0.65754307	23	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	1	0	1					16.428	16.428	2	7.0328E-211	8062	DP1141_16	246.08	161.34		+	52830000	97	23	91	196	304	304		1	9606
APSTYGGGLSVSSSR	Unmodified	1424.6896	0.68957148	15	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1.5	0.5	1	1				16.493	16.493	2	3.2751E-212	8092	DP1141_17	233.32	163.72		+	92890000	98	15	92	197;198	305;306	306		2	9606
APVPGTPDSLSSGSSR	Unmodified	1513.7372	0.73724996	442	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				1		16.2	16.2	2	0.018615	8021	DP1141_19	84.479	33.034			14128000	99	442	93	199	307	307		1	9606
AQAAAPASVPAQAPK	Unmodified	1376.7412	0.74121312	180	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	5	0					1	14.853	14.853	2	0.0053081	6137	DP1141_20	125.72	90.209			68482000	100	180	94	200	308	308		1	9606
AQAVHPGYGFLSENK	Unmodified	1616.7947	0.79470526	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.334	17.334	2	8.9543E-06	9467	DP1141_18	142.76	102.89			21297000	101	81	95	201	309;310;311	311		3	9606
AQAVHPGYGFLSENKEFAR	Unmodified	2120.0439	0.043937085	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	1	0	1					18.039	18.039	3	5.6334E-85	10582	DP1141_16	210.2	184.35			12023000	102	81	96	202	312	312		0	9606
AQDQGEKENPMR	Acetyl (Protein N-term)	1443.6412	0.64124108	245	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	5	0					1	14.853	14.853	2	5.375799999999999E-22	6041	DP1141_20	145.28	112.52			59671000	103	245	97	203	313;314	314		2	9606
AQEEGPGEPPPPELALLPPPPPPPPTPATPTSSASNLDLGEQR	Unmodified	4345.1754	0.17541135	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				2		21.935	21.935	3;4	1.7401E-24	16718	DP1141_19	107.5	97.924			119140000	104	367	98	204;205	315;316;317;318;319	317		5	9606
AQEPESGLSEETQVK	Unmodified	1630.7686	0.76860967	256	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.028	16.028	2	0.0050147	7602	DP1141_16	95.273	64.415			7031500	105	256	99	206	320	320		0	9606
AQFLVEK	Unmodified	833.4647	0.46470391	407	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		16.568	16.568	2	0.032894	8436	DP1141_19	90.777	24.879			56321000	106	407	100	207	321	321		0	9606
AQIHDLVLVGGSTR	Unmodified	1464.8049	0.80487601	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	3	0			1			17.733	17.733	2	2.2896E-68	10123	DP1141_18	208.51	178.59			733210000	107	105	101	208	322	322		1	9606
AQIMNVSWSADHR	Oxidation (M)	1529.7045	0.70451004	109	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	1	0	3	0			1			16.318	16.318	3	0.032889	7642	DP1141_18	58.595	29.609			21271000	108	109	102	209	323	323	105	0	9606
AQLEQSVEENKER	Unmodified	1558.7587	0.75871368	406	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	3	1		1		1		14.336	14.336	3	1.0063E-06	5036	DP1141_19	122.55	87.863			19888000	109	406	103	210;211	324;325	325		1	9606
AQNDLIWNIKDELKK	Unmodified	1826.989	0.98904797	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0		1				19.204	19.204	3	0.0012104	12583	DP1141_17	97.273	59.92			105280000	110	101	104	212	326	326		0	9606
AQVVHLLSTMDSPAST	Oxidation (M)	1671.8138	0.81378572	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.039	18.039	2	0.0028788	10691	DP1141_16	107.34	68.63			9930500	111	39	105	213	327	327	30	1	9606
AQYEDIAQK	Unmodified	1064.5138	0.51383895	74	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	1	0	1					15.178	15.178	2	1.6615E-10	5964	DP1141_16	138.06	79.832		+	0	112	74	106	214	328	328		1	9606
AQYEEIAQR	Unmodified	1106.5356	0.53563702	28;73	P04259;CON__P35908v2;CON__P35908;P35908	KRT6B;KRT2	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	3	2	1				1	15.498	15.498	2	5.1705E-18	6513	DP1141_16	161.9	105.89		+	284030000	113	73;28	107	215;216	329;330	329		2	9606
ARFEELCSDLFR	Unmodified	1541.7297	0.72966216	105;121	P0DMV8;P0DMV9;P17066;P48741	HSPA1A;HSPA1B;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	1	3	0			1			19.934	19.934	2	2.895E-19	13624	DP1141_18	178.53	129.18			32227000	114	105;121	108	217	331	331		0	9606
ARPPPPPPPPAPPRPPPAAPSPPAAPGPR	Unmodified	2803.5398	0.53982197	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	2	2.25	0.433		3	1			18.321	18.321	3;4	8.2519E-13	10010	DP1141_17	122.18	101.32			102480000	115	343	109	218;219;220;221	332;333;334;335;336;337;338;339;340;341;342;343;344	339		13	9606
ASAVSELSPR	Unmodified	1015.5298	0.52982336	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.5	0.5	1	1				15.957	15.957	2	4.4449E-113	7227	DP1141_16	204.42	129.38			66721000	116	457	110	222;223	345;346;347;348	345		4	9606
ASESSKPWPDATYGTGSASR	Unmodified	2053.9341	0.93411186	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	1.5	0.5	2	2				16.559	16.559	2;3	1.4192E-264	8303	DP1141_16	241.39	195.96			266320000	117	457	111	224;225;226;227	349;350;351;352;353	350		5	9606
ASGNYATVISHNPETK	Unmodified	1687.8166	0.81656291	246	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4.5	0.5				1	1	15.746	15.746	3	0.0086612	7246	DP1141_19	143.38	114.59			22519000	118	246	112	228;229	354;355	354		2	9606
ASGPPVSELITK	Unmodified	1197.6605	0.66050319	118	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	0	4	0				1		17.928	17.928	2	0.00022563	10525	DP1141_19	139.15	91.284			2229700000	119	118	113	230	356;357;358	357		3	9606
ASHEEVEGLVEK	Unmodified	1325.6463	0.64630969	289	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	3	0			2			15.516	15.516	2;3	1.0461E-114	6469	DP1141_18	213.35	155.12			63191000	120	289	114	231;232	359;360	359		1	9606
ASITPGTILIILTGR	Unmodified	1524.9239	0.92392852	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	2.5	1.5	1			1		24.561	24.561	2	8.115000000000001E-57	20568	DP1141_19	190.36	155.18			38411000	121	272	115	233;234	361;362;363	363		3	9606
ASKPLPPAPAPDEYLVSPITGEK	Unmodified	2376.2577	0.25767783	330	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				19.259	19.259	3	0.0072068	12669	DP1141_17	63.522	46.101			0	122	330	116	235	364	364		1	9606
ASLSLAPVNIFK	Acetyl (Protein N-term)	1300.7391	0.73908786	255	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	3	0			1			23.932	23.932	2	0.00047012	19493	DP1141_18	114.89	53.203			55817000	123	255	117	236	365;366	366		2	9606
ASMQQQQQLASAR	Unmodified	1445.7045	0.70451004	460	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	4	0				1		14.903	14.903	2	0.017891	5853	DP1141_19	91.123	46.276			25711000	124	460	118	237	367	367		1	9606
ASPSPTDPVVPAVPIGPPPAGFR	Unmodified	2225.1845	0.18445331	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.2	0.748	1	2	2			20.662	20.662	2;3	0	14786	DP1141_17	267.77	231.67			445570000	125	112	119	238;239;240;241;242	368;369;370;371;372;373;374;375;376;377;378	370		11	9606
ASSGLLYPLER	Unmodified	1204.6452	0.64518747	291	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	3	0			1			19.534	19.534	2	0.0060666	12832	DP1141_18	108.43	54.464			13138000	126	291	120	243	379	379		1	9606
ATAGDTHLGGEDFDNR	Unmodified	1674.7234	0.72339081	105;121	P0DMV8;P0DMV9;P34931;P17066;P48741	HSPA1A;HSPA1B;HSPA1L;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	3.5	0.5			1	1		15.899	15.899	3	3.7541E-06	7222	DP1141_18	141	125.71			2991899999.9999995	127	105;121	121	244;245	380;381	380		2	9606
ATCAPQHGAPGPGPADASK	Unmodified	1788.8213	0.82133071	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	3	1		1		1		12.794	12.794	3	0.0028512	2900	DP1141_17	104.84	69.8			6973500	128	131	122	246;247	382;383	382		2	9606
ATENDIANFFSPLNPIR	Unmodified	1917.9585	0.95847612	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4.5	0.5				2	2	23.159	23.159	2;3	0	18583	DP1141_19	274.38	228.93			1400500000	129	146	123	248;249;250;251	384;385;386;387;388;389;390;391	386		8	9606
ATENDIYNFFSPLNPMR	Oxidation (M)	2043.936	0.93602612	205	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	3.5	0.5			1	1		22.756	22.756	2	1.5493E-16	17658	DP1141_18	156.52	128.6			30241000	130	205	124	252;253	392;393;394	392	200	3	9606
ATENDIYNFFSPLNPVR	Unmodified	1995.969	0.96904081	147;196	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	3.8	0.748			2	2	1	23.214	23.214	2;3	0	18352	DP1141_18	391.38	328.68			330200000	131	147;196	125	254;255;256;257;258	395;396;397;398;399;400;401;402;403;404;405	395		11	9606
ATGEADVEFVTHEDAVAAMSK	Unmodified	2176.9947	0.99466321	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4	0				2		27.944	27.944	3	3.5456E-08	12537	DP1141_19	126.4	84.051			295430000	132	146	126	259;260	406;407	406		2	9606
ATGEADVEFVTHEDAVAAMSK	Oxidation (M)	2192.9896	0.98957783	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	1	0	4	0				1		36.759	36.759	3	0.0031179	35088	DP1141_19	76.704	31.636			7393900	133	146	126	261	408;409	409	152	2	9606
ATIAGGGVIPHIHK	Unmodified	1369.783	0.78301836	102	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					2	16.058	16.058	2;3	0.0016717	8019	DP1141_20	117.02	82.22			587360000	134	102	127	262;263	410;411;412;413	413		4	9606
ATTAALLLEAQAATGFLVDPVRNQR	Unmodified	2625.4238	0.42384874	325	Q15149	PLEC	Plectin	yes	yes	0	0	1	2.5	0.5		1	1			23.244	23.244	2;3	0.015324	18677	DP1141_17	78.191	50.542			6642300	135	325	128	264;265	414;415	414		2	9606
ATTATMATSGSARK	Acetyl (Protein N-term);Oxidation (M)	1410.6773	0.67729224	160	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	1	1	5	0					1	26.421	26.421	2	0.034235	23815	DP1141_20	49.189	11.998			0	136	160	129	266	416	416	168	1	9606
AVAFFLESIAMHDIIAAEK	Oxidation (M)	2091.0711	0.071063038	256	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					23.079	23.079	3	0.0014461	18362	DP1141_16	102.03	83.732			3464600	137	256	130	267	417;418	417	227	2	9606
AVAGDASESALLK	Unmodified	1230.6456	0.6455814	78	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				16.98	16.98	2	0.0060462	9025	DP1141_17	110.38	69.301			0	138	78	131	268	419	419		1	9606
AVFPSIVGR	Unmodified	944.54435	0.54435122	209;248	P60709;P63267;P68133;P68032;P62736;Q6S8J3;P0CG38;A5A3E0;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;POTEE;POTEI;POTEF;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	2.5	1.12	1	1	1	1		19.033	19.033	2	4.0505E-09	12441	DP1141_17	143.11	96.443			263250000	139	209;248	132	269;270;271;272	420;421;422;423	421		4	9606
AVFVDLEPTVIDEIR	Unmodified	1714.9142	0.91415169	252	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	3	1		1		1		22.408	22.408	2	0.0027384	17450	DP1141_17	138.42	87.171			6206900	140	252	133	273;274	424;425	424		2	9606
AVFVDLEPTVIDEVR	Unmodified	1700.8985	0.89850163	251;413	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3	1.22	1		1	2		21.696	21.696	2;3	3.3622E-162	16422	DP1141_16	218.15	156.37			161780000	141	251;413	134	275;276;277;278	426;427;428;429;430	426		5	9606
AVLVDLEPGTMDSVR	Oxidation (M)	1616.808	0.80797206	253	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	yes	no	0	1	0	3	0			1			19.134	19.134	2	0.022653	12350	DP1141_18	82.171	34.943			173860000	142	253	135	279	431	431	225	1	9606
AVNYVGAGTVEFIMDSK	Unmodified	1799.8764	0.87638598	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			21.634	21.634	2	5.5328E-05	16092	DP1141_18	101.62	74.976			33073000	143	405	136	280;281	432;433	433		1	9606
AVNYVGAGTVEFIMDSK	Oxidation (M)	1815.8713	0.8713006	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		20.158	20.158	2	3.2025E-105	13886	DP1141_18	210.91	152.73			338060000	144	405	136	282;283;284	434;435;436;437;438;439;440	436	364	7	9606
AVPETRPNHTIYINNLNEK	Acetyl (Protein N-term)	2264.1549	0.1549441	99	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	1	0	1	5	0					1	17.735	17.735	3	0.0071087	10815	DP1141_20	77.191	57.872			4729400	145	99	137	285	441	441		1	9606
AVPYPQRDMPIQAFLLYQEPVLGPVRGPFPIIV	Oxidation (M)	3736.0215	0.021481076	18	CON__P02666			yes	yes	0	1	2	4	0				1		24.542	24.542	3	6.8461E-09	20657	DP1141_19	86.304	68.698		+	3769900	146	18	138	286	442	442	10	1	
AVSDWIDEQEK	Unmodified	1318.6041	0.60411052	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	4	0				1		18.701	18.701	2	0.016868	11900	DP1141_19	117.01	73.379			0	147	297	139	287	443	443		1	9606
AVTEQGHELSNEER	Unmodified	1597.7332	0.73322721	148	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	3.5	1.5		1			1	14.028	14.028	3	0.0069636	4466	DP1141_17	119.25	67.483			10757000	148	148	140	288;289	444;445	444		2	9606
AVVVCPKDEDYK	Unmodified	1421.6861	0.68606601	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				14.979	14.979	3	0.02994	5959	DP1141_17	89.266	62.117			7843000	149	267	141	290	446	446		1	9606
AYHEQLSVAEITNACFEPANQMVK	Oxidation (M)	2765.2789	0.27890034	251;252	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	1	0	3	0			1			19.507	19.507	3	0.00071646	12907	DP1141_18	75.225	53.182			31947000	150	251;252	142	291	447	447	224	1	9606
AYIAYELNSVQHR	Unmodified	1562.7841	0.78414057	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					17.94	17.94	2;3	5.1711E-181	10375	DP1141_16	238.73	175.55			587740000	151	302	143	292;293	448;449;450;451;452	451		5	9606
AYNMVDIIHSVVDER	Oxidation (M)	1775.8512	0.85123386	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		19.145	19.145	3	0.0017344	12728	DP1141_19	91.845	76.965			388850000	152	82	144	294;295	453;454	454	63	2	9606
AYSEALAAFGNGALFVEK	Unmodified	1856.9309	0.93086439	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				22.226	22.226	2;3	1.0912E-49	17169	DP1141_17	178.67	129.2			43267000	153	112	145	296;297	455;456	455		2	9606
AYVEANQMLGDLIK	Oxidation (M)	1579.7916	0.79159371	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		19.499	19.499	2	0.0010403	13037	DP1141_16	138.76	97.363			192080000	154	112	146	298;299;300	457;458;459	457	114	3	9606
AYVVLGQFLVLK	Unmodified	1348.8119	0.81185887	57	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	5	0					1	22.809	22.809	2	0.0098445	18655	DP1141_20	109.11	74.723			23488000	155	57	147	301	460	460		0	9606
AYVWDNNK	Unmodified	1008.4665	0.46649483	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.039	17.039	2	8.8923E-08	9080	DP1141_16	157.99	119.18			32669000	156	302	148	302	461	461		0	9606
CGVQSFYTPR	Unmodified	1213.555	0.55499226	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				1		17.728	17.728	2	7.0332E-53	10339	DP1141_19	225.24	159.77			363090000	157	367	149	303	462;463	462		2	9606
CKVHNEGLPAPIVR	Unmodified	1588.8508	0.85078035	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	1	4	1			1		1	15.661	15.661	3	3.7046E-05	6760	DP1141_18	147.52	115.85		+	172520000	158	11;10	150	304;305	464;465;466	464		3	
CLPGHKEEEDGEGAGPGEQGGGK	Unmodified	2293.987	0.98695207	111	P11474	ESRRA	Steroid hormone receptor ERR1	yes	yes	0	0	1	3	0			1			13.54	13.54	3	0.025958	3646	DP1141_18	58.964	35.98			0	159	111	151	306	467	467		1	9606
CPQIVIAFYEER	Unmodified	1523.7442	0.74424959	172;304	P45973;Q13185	CBX5;CBX3	Chromobox protein homolog 5;Chromobox protein homolog 3	no	no	0	0	0	5	0					1	20.909	20.909	2	5.2742E-06	15855	DP1141_20	146.11	92.51			47096000	160	172;304	152	307	468	468		1	9606
CRDDSFFGETSHNYHK	Unmodified	1998.8279	0.82787265	170	P43243	MATR3	Matrin-3	yes	yes	0	0	1	2	0		1				15.757	15.757	4	0.0037649	6908	DP1141_17	83.633	57.787			3399100	161	170	153	308	469	469		1	9606
CREETFKQESQPPEK	Unmodified	1891.8734	0.87342586	346	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	2	2.5	0.5		1	1			13.717	13.717	3	8.3137E-10	4065	DP1141_17	154.13	116.76			6507200	162	346	154	309;310	470;471	470		2	9606
CSDSDGLAPPQHLIR	Unmodified	1664.7941	0.79405333	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			17.034	17.034	3	0.0035512	9125	DP1141_18	88.163	54.858			216780000	163	76	155	311	472	472		1	9606
CSTILLQGKEQPLDEEMKEAFQNAYLELGGLGER	Unmodified	3865.8866	0.88663967	115	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	2	3	0			1			13.612	13.612	7	0.036027	3081	DP1141_18	26.826	11.577			15024000	164	115	156	312	473	473		1	9606
CTGGEVGATSALAPK	Unmodified	1417.6871	0.68712864	144	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	16.058	16.058	2	0.011543	8107	DP1141_20	108.72	59.298			34682000	165	144	157	313	474	474		1	9606
DAASVDKVLELK	Unmodified	1286.7082	0.70818166	42	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	1	4	0				1		18.292	18.292	2	4.2158E-52	11754	DP1141_19	186.74	71.77			274460000	166	42	158	314	475	475		1	9606
DAEAWFNEK	Unmodified	1108.4825	0.48253882	25	CON__P13645;P13645;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8	KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	yes	no	0	0	0	2	0		1				19.304	19.304	2	0.0075457	12894	DP1141_17	104.44	66.277		+	141120000	167	25	159	315	476;477	477		2	9606
DAEDVDLNHYR	Unmodified	1345.5899	0.58985744	329	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	3	0			1			16.665	16.665	2	1.2274E-14	8182	DP1141_18	159.37	114.39			12534000	168	329	160	316	478	478		1	9606
DAFLGSFLYEYSR	Unmodified	1566.7355	0.73545904	22	CON__P02769			yes	yes	0	0	0	5	0					1	23.464	23.464	2	0.0065062	19742	DP1141_20	110.84	83.949		+	16279000	169	22	161	317	479	479		1	
DALSDLALHFLNK	Unmodified	1455.7722	0.7721789	191	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			23.24	23.24	2	1.5403999999999998E-67	18472	DP1141_18	219.72	152.75			20934000	170	191	162	318	480;481	480		2	9606
DANLYISGLPR	Unmodified	1217.6404	0.64043645	332	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	4	0				1		19.73	19.73	2	0.010218	13568	DP1141_19	100.48	56.965			17341000	171	332	163	319	482	482		1	9606
DAPQDFHPDR	Unmodified	1196.521	0.52104959	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				14.754	14.754	2	0.024524	5499	DP1141_17	88.496	57.31			6101400	172	131	164	320	483	483		1	9606
DAVTYTEHAK	Unmodified	1133.5353	0.53530267	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	13.858	13.858	2	4.8332E-12	4501	DP1141_20	154.12	126.24			26537000	173	234	165	321	484	484		1	9606
DCFGCLR	Unmodified	926.37386	0.37385677	57	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	5	0					1	17.449	17.449	2	0.00011328	10394	DP1141_20	126.04	100.48			448210000	174	57	166	322	485;486	486		2	9606
DDDIAALVVDNGSGMCK	Acetyl (Protein N-term)	1820.7921	0.792064	209	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	0	0	3	0.816		1	1	1		22.69	22.69	2	1.2859E-59	17657	DP1141_18	187.62	164.48			19260000	175	209	167	323;324;325	487;488;489;490	488		4	9606
DDGLFSGDPNWFPK	Unmodified	1593.71	0.70997257	157	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	22.809	22.809	2	0.0029708	18635	DP1141_20	134.38	74.279			22984000	176	157	168	326	491	491		1	9606
DDQSIQKSVETIK	Unmodified	1489.7624	0.76240208	71	P01579	IFNG	Interferon gamma	yes	yes	0	0	1	4	0				1		18.647	18.647	2	0.00041349	11812	DP1141_19	101.3	43.746			0	177	71	169	327	492	492		1	9606
DEPIHILNVAIK	Unmodified	1360.7715	0.77145062	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				19.725	19.725	2;3	1.5153999999999999E-40	13304	DP1141_16	158.79	76.337			2012299999.9999998	178	302	170	328;329;330	493;494;495;496	493		3	9606
DETEFYLGK	Unmodified	1100.5026	0.50260556	125	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	5	0					1	18.927	18.927	2	0.013446	12860	DP1141_20	93.374	51.947			4587900	179	125	171	331	497	497		1	9606
DFFNYLPLSSQDPAPVR	Unmodified	1964.9632	0.96322715	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.33	0.943	1		2			22.823	22.823	2;3	0	17824	DP1141_18	287.29	203.13			59396000	180	82	172	332;333;334	498;499;500;501	499		4	9606
DFTATFGPLDSLNTR	Unmodified	1653.7999	0.79985021	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		22.002	22.002	2	0	16711	DP1141_16	307.97	249.6			205310000	181	112	173	335;336;337	502;503;504;505;506	502		5	9606
DFTVASPAEFVTR	Unmodified	1438.7092	0.70924429	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.5	0.5	1	1				20.819	20.819	2	1.1991E-136	15035	DP1141_17	227.27	154.94			938320000	182	302;39	174	338;339	507;508;509;510;511;512	512		6	9606
DGMDNQGGYGSVGR	Oxidation (M)	1427.5736	0.57355545	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	1	0	4	0				1		15.003	15.003	2	2.3875E-31	6029	DP1141_19	174.57	142.94			325360000	183	146	175	340	513;514	513	153	2	9606
DGQVINETSQHHDDLE	Unmodified	1835.7922	0.79219865	98	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			15.718	15.718	2	1.8575E-13	6896	DP1141_18	163.78	128.13			8069800	184	98	176	341	515	515		0	9606
DHTVSGDEDYCPR	Unmodified	1549.6103	0.61033488	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	2	0		1				14.853	14.853	3	0.020158	5514	DP1141_17	83.137	69.408			20474000	185	441	177	342	516	516		1	9606
DIDIHEVR	Unmodified	995.50361	0.50360861	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				16.063	16.063	2	1.8283E-05	7466	DP1141_17	155.75	94.966			88695000	186	267	178	343	517	517		0	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	Unmodified	3263.5066	0.5065879	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					21.934	21.934	3	1.1972E-05	16539	DP1141_16	75.695	48.492		+	531450000	187	27	179	344	518;519	518		2	9606
DIIVIGNDITYR	Unmodified	1390.7456	0.7456298	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.734	20.734	2	0.028951	14939	DP1141_16	88.596	33.135			747350000	188	302	180	345	520	520		1	9606
DIPGLTDTTVPR	Unmodified	1283.6721	0.67213051	233	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	2.5	1.5	1			1		19.131	19.131	2	0.00098481	12548	DP1141_19	135.43	98.668			95582000	189	233	181	346;347	521;522;523	522		3	9606
DISEASVFDAYVLPK	Unmodified	1652.8298	0.82975336	239	P62854	RPS26	40S ribosomal protein S26	yes	yes	0	0	0	5	0					1	22.496	22.496	2	8.5833E-85	18201	DP1141_20	203.03	149.27			44007000	190	239	182	348	524;525	524		2	9606
DKFEEDRIYR	Unmodified	1369.6626	0.66262845	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					15.632	15.632	2	2.3097E-06	6744	DP1141_16	131.62	74.467			135100000	191	302	183	349	526	526		1	9606
DKGEYTLVVK	Unmodified	1150.6234	0.6233894	131	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1	0	1					16.426	16.426	2	4.3767E-10	7991	DP1141_16	137.05	84.109			0	192	131	184	350	527	527		1	9606
DKPHVNVGTIGHVDHGK	Unmodified	1808.9282	0.92817905	186	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		14.19	14.19	4	9.6099E-07	4786	DP1141_19	108.25	77.926			11108000	193	186	185	351	528	528		0	9606
DKYGVFPLR	Unmodified	1093.592	0.59202969	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	3	0			1			18.361	18.361	2	0.034316	11074	DP1141_18	85.212	35.085			0	194	110	186	352	529	529		1	9606
DLDELMEAVLER	Unmodified	1431.6915	0.69154532	192	P51168	SCNN1B	Amiloride-sensitive sodium channel subunit beta	yes	yes	0	0	0	3	0			1			17.183	17.183	2	0.0048708	9201	DP1141_18	102.62	36.902			0	195	192	187	353	530	530		1	9606
DLIQMLVQR	Oxidation (M)	1130.6118	0.61177885	273	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	1	0	1.5	0.5	1	1				21.076	21.076	2	0.0051538	15522	DP1141_17	111.82	54.638			18649000	196	273	188	354;355	531;532	532	243	2	9606
DLKDYFSK	Unmodified	1014.5022	0.50221163	309	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	1	4	0				1		18.329	18.329	2	3.1013999999999996E-46	11350	DP1141_19	195.05	128.05			75879000	197	309	189	356	533	533		0	9606
DLKDYFTK	Unmodified	1028.5179	0.51786169	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	1	4.5	0.5				1	1	18.527	18.527	2	5.3778E-60	11655	DP1141_19	209.58	104.48			1401400000	198	408	190	357;358	534;535	534		1	9606
DLKPQNLLIDDKGTIK	Unmodified	1810.02	0.020013746	87	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	2	4	0				1		18.229	18.229	3	0.015483	11146	DP1141_19	75.998	51.543			46551000	199	87	191	359	536	536		0	9606
DLLHPSPEEEKRK	Unmodified	1576.8209	0.82092001	169	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	2	3	2	1				1	14.436	14.436	3	9.788799999999999E-67	4849	DP1141_16	196.27	161.37			162870000	200	169	192	360;361	537;538;539	537		3	9606
DLPLLLFR	Unmodified	985.59605	0.59605244	44	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			23.414	23.414	2	6.4141E-11	18675	DP1141_18	138.07	74.768			17875000	201	44	193	362	540	540		1	9606
DLTEYLSR	Unmodified	995.49238	0.49237523	42	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	5	0					1	19.65	19.65	2	8.9116E-15	13953	DP1141_20	147.34	82.532			65028000	202	42	194	363	541	541		1	9606
DLYEDELVPLFEK	Unmodified	1608.7923	0.79230522	46	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	3	0			1			23.265	23.265	2	5.9517E-54	18479	DP1141_18	187.42	129.56			8401400	203	46	195	364	542;543	542		2	9606
DMAEMQRVWKEK	Oxidation (M)	1565.733	0.73303298	324	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	1	2	1	0	1					18.34	18.34	2	0.00085526	11261	DP1141_16	117.53	32.708			522420000	204	324	196	365	544;545	545	308	2	9606
DMAGLLKPTACTMLVSSLR	Oxidation (M)	2079.0527	0.052652557	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	1	0	1					20.335	20.335	3	0.032092	14571	DP1141_16	64.331	37.971			74380000	205	112	197	366	546	546	115;116	0	9606
DMAGLLKPTACTMLVSSLR	2 Oxidation (M)	2095.0476	0.047567179	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2	0		1				19.404	19.404	3	0.0075562	12855	DP1141_17	65.085	41.246			105690000	206	112	197	367	547	547	115;116	1	9606
DMLEAGILDTYLGK	Oxidation (M)	1553.7647	0.76471026	190	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	3	0			1			22.178	22.178	2	0.0023965	16849	DP1141_18	107.85	45.38			9155700	207	190	198	368	548	548	184	1	9606
DMPIQAFLLYQEPVLGPVR	Oxidation (M)	2201.1555	0.15546137	18	CON__P02666			yes	yes	0	1	0	3.57	1.29	1		2	2	2	23.627	23.627	2;3	0	18984	DP1141_18	286.74	249.13		+	243070000	208	18	199	369;370;371;372;373;374;375	549;550;551;552;553;554;555;556;557;558;559;560;561	550	10	13	
DNHLLGTFDLTGIPPAPR	Unmodified	1933.0058	0.005760665	107	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			21.134	21.134	3	8.615399999999999E-38	15304	DP1141_18	133.78	109.73			23916000	209	107	200	376	562;563	562		2	9606
DNHSPVPIITPTDPIDREIEFLPSR	Unmodified	2857.461	0.4610221	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	2					21.234	21.234	3;4	0.00020678	15443	DP1141_16	82.146	55.646			21099000	210	39	201	377;378	564;565	565		1	9606
DNIQGITKPAIR	Unmodified	1324.7463	0.7462985	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					8	21.646	21.646	1;2;3	0	8344	DP1141_20	298.58	222.41			37029000000	211	234	202	379;380;381;382;383;384;385;386	566;567;568;569;570;571;572;573;574;575;576;577;578;579	577		10	9606
DNIQGITKPAIRR	Unmodified	1480.8474	0.84740953	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	2	5	0					1	15.293	15.293	2	0.012865	6739	DP1141_20	110.53	50.47			8116400	212	234	203	387	580	580		1	9606
DNTCVVEFQFMLPTSHPNR	Unmodified	2291.0463	0.046321626	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				21.334	21.334	3	4.3582E-09	15731	DP1141_16	175.19	143.31			70311000	213	302	204	388;389	581;582;583	582		3	9606
DPALNSGVSQKPDPAK	Unmodified	1622.8264	0.82639932	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	1.5	0.5	1	1				14.585	14.585	2;3	0.002683	5162	DP1141_16	114.01	80.172			25645000	214	110	205	390;391	584;585	584		2	9606
DPLLLAIIPK	Unmodified	1091.6954	0.69543213	425	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	2	0		1				22.912	22.912	2	0.0036392	18221	DP1141_17	113.71	95.721			4850500	215	425	206	392	586	586		1	9606
DPSLPLLELQDIMTSVSGR	Oxidation (M)	2086.0616	0.061620564	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					23.686	23.686	2	5.918199999999999E-93	18952	DP1141_16	201.72	167.72			47153000	216	302	207	393	587;588;589	589	264	3	9606
DPSLPLLELQDIMTSVSGR	Unmodified	2070.0667	0.066705942	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					26.021	26.021	2	1.3912999999999999E-285	22455	DP1141_16	261.45	212.5			5716200	217	302	207	394	590;591;592;593;594;595	595		6	9606
DRLLASTLVHSVK	Unmodified	1437.8304	0.83036248	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	1	0	1					17.515	17.515	3	0.0013405	9793	DP1141_16	108.58	67.099			0	218	435	208	395	596	596		1	9606
DSEEAEIIRK	Unmodified	1188.5986	0.59863121	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				15.254	15.254	2	2.1571E-16	6289	DP1141_17	160.63	75.365			38410000	219	101	209	396	597	597		1	9606
DSEITANALK	Unmodified	1060.5401	0.5400537	5	A6NHC0	CAPN8	Calpain-8	yes	yes	0	0	0	2	0		1				16.909	16.909	2	0.012746	8655	DP1141_17	98.458	13.543			5855100	220	5	210	397	598	598		1	9606
DSLHQPQYVEK	Unmodified	1342.6517	0.65172941	396	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1	0	1					15.001	15.001	2	0.0066126	5692	DP1141_16	106.62	65.895			0	221	396	211	398	599	599		1	9606
DSLTLVFVETK	Unmodified	1250.6758	0.6758189	38	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			21.134	21.134	2	0.00010657	15257	DP1141_18	131.12	92.362			8782000	222	38	212	399	600	600		1	9606
DSRPSQAAGDNQGDEAKEQTFSGGTSQDTK	Unmodified	3111.3613	0.36132065	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	2	2	0		1				14.655	14.655	4	0.00044282	5443	DP1141_17	52.642	44.569			70712000	223	457	213	400	601	601		1	9606
DSTLIMQLLR	Oxidation (M)	1204.6486	0.64855829	247;148;222	P63104;P27348;Q04917;P61981;P31947;P31946;P62258	YWHAZ;YWHAQ;YWHAH;YWHAG;SFN;YWHAB;YWHAE	14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein eta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein sigma;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein epsilon	no	no	0	1	0	3	1.58	1	1		1	1	22.126	22.126	2	4.4923E-07	17163	DP1141_19	127.46	56.553			84510000	224	247;148;222	214	401;402;403;404	602;603;604;605;606;607	605	158	6	9606
DTLYEAVR	Unmodified	965.48181	0.48181054	243	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	17.288	17.288	2	0.0029232	10121	DP1141_20	117.16	58.556			93198000	225	243	215	405	608	608		1	9606
DTSYLFITGPDVVK	Unmodified	1553.7977	0.79772495	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.534	21.534	2	5.6115E-55	15972	DP1141_18	202.03	161.98			78463000	226	82	216	406	609	609		0	9606
DTVTISGPQAPVFEFVEQLRK	Unmodified	2360.2376	0.23761109	184	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	0	1					23.092	23.092	3	0.01566	18356	DP1141_16	54.271	15.853			2174400	227	184	217	407	610	610		1	9606
DVDAAYMNKVELEAK	Oxidation (M)	1710.8135	0.81345137	26	CON__P13647;P13647;CON__O95678;O95678	KRT5;KRT75	Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75	no	no	0	1	1	1	0	1					16.877	16.877	3	0.005248	8806	DP1141_16	92.265	26.794		+	20463000	228	26	218	408	611	611	14	1	9606
DVDDGLQAAEEVGYPVMIK	Oxidation (M)	2063.9721	0.97213685	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.934	20.934	2	6.892799999999999E-93	14854	DP1141_16	201.06	176.99			123300000	229	302	219	409	612;613	612	265	2	9606
DVDDGLQAAEEVGYPVMIK	Unmodified	2047.9772	0.97722223	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.932	21.932	2	1.7541E-151	16425	DP1141_16	223.03	177.75			23319000	230	302	219	410	614;615	614		2	9606
DVDIIDHHDNTYTVK	Unmodified	1783.8377	0.83769228	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					16.877	16.877	3	0.017254	8833	DP1141_16	76.868	45.548			15215000	231	131	220	411	616	616		0	9606
DVFRDPALKR	Unmodified	1215.6724	0.67240528	214	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	15.746	15.746	3	0.032277	7628	DP1141_20	83	55.228			40092000	232	214	221	412	617	617		0	9606
DVNAAIATIK	Unmodified	1014.571	0.5709599	251;413	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			17.934	17.934	2	0.0084946	10460	DP1141_18	105.4	56.038			1135300000	233	251;413	222	413	618	618		1	9606
DVNQQEFVR	Unmodified	1133.5465	0.54653606	161	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	16.536	16.536	2	7.0842E-08	8844	DP1141_20	130.27	87.025			64839000	234	161	223	414	619	619		1	9606
DVQIGDIVTVGECRPLSK	Unmodified	1985.0252	0.025175478	227	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	19.664	19.664	2	0	13999	DP1141_20	288.96	214.82			32685000	235	227	224	415	620	620		1	9606
DVVQAYPEVR	Unmodified	1174.5982	0.59823728	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				17.323	17.323	2	0.015853	9378	DP1141_16	94.85	48.878			89748000	236	288	225	416;417	621;622	621		2	9606
DYELQTMTYRAMVDSQQK	2 Oxidation (M)	2237.9933	0.993283	275	Q03001	DST	Dystonin	yes	yes	0	2	1	4	0				1		12.958	12.958	3	0.032205	3452	DP1141_19	44.045	22.369			16797000	237	275	226	418	623	623	245;246	1	9606
DYQELMNTK	Oxidation (M)	1156.507	0.50703901	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	0	2.75	1.48	1	1	1		1	15.626	15.626	2	6.4814E-08	6834	DP1141_17	132.76	88.409		+	660360000	238	74	227	419;420;421;422	624;625;626;627;628	626	52	5	9606
DYQELMNTK	Unmodified	1140.5121	0.51212439	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2	1	1		1			17.786	17.786	2	0.00016907	10143	DP1141_18	125.82	62.398		+	172820000	239	74	227	423;424	629;630	630		1	9606
EAEPPPVEAMLTPASQNDLSDFR	Oxidation (M)	2529.1693	0.16933311	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	0	2.75	0.829		2	1	1		19.968	19.968	2;3	0.010057	13853	DP1141_17	81.713	59.853			102720000	240	343	228	425;426;427;428	631;632;633;634	632	316	2	9606
EAEPPPVEAMLTPASQNDLSDFR	Unmodified	2513.1744	0.17441849	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2	0		1				21.804	21.804	3	1.2027E-09	16545	DP1141_17	119.38	89.296			11542000	241	343	228	429	635	635		1	9606
EAEPPPVEAMLTPASQNDLSDFRSEPALYF	Oxidation (M)	3336.5496	0.54963869	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	1	2	0		1				22.805	22.805	3	1.0422E-06	18111	DP1141_17	65.801	48.432			4590800	242	343	229	430	636	636	316	1	9606
EAHEPLAVADAK	Unmodified	1249.6303	0.63026569	458	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			14.865	14.865	3	6.6448E-09	5544	DP1141_18	117.79	83.917			0	243	458	230	431	637	637		1	9606
EALGGQALYPHVLVK	Unmodified	1593.8879	0.88787736	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2.8	0.748		2	2	1		18.668	18.668	2;3	1.9496E-43	11647	DP1141_18	227.36	139.22			379370000	244	417	231	432;433;434;435;436	638;639;640;641;642;643;644;645;646	643		9	9606
EAPPMEKPEVVK	Oxidation (M)	1368.6959	0.69590241	236	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	5	0					1	13.902	13.902	3	0.0026394	4571	DP1141_20	112.94	70.135			23725000	245	236	232	437	647	647	215	1	9606
EASFEYLQNEGER	Unmodified	1570.69	0.68996541	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					18.434	18.434	2	6.4895E-181	11306	DP1141_16	237.84	217.06			499150000	246	302;39	233	438	648	648		1	9606
EATTEFSVDAR	Unmodified	1224.5622	0.5622457	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				16.873	16.873	2	3.448E-21	8813	DP1141_17	162.88	132.8			54802000	247	131	234	439	649	649		1	9606
EAVGDLLDAFK	Unmodified	1176.6027	0.60265396	278	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	3	2	1				1	23.207	23.207	2	0.00012569	18566	DP1141_16	132.76	65.264			250330000	248	278	235	440;441	650;651;652	650		3	9606
EAYPGDVFYLHSR	Unmodified	1552.731	0.73104237	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			2	2		19.005	19.005	2;3	0.0031745	12046	DP1141_18	110.98	93.111			73448000	249	139	236	442;443;444;445	653;654;655;656;657;658	653		6	9606
ECGKAFGSPNSLYEHR	Unmodified	1850.837	0.83698078	292	Q08AG5	ZNF844	Zinc finger protein 844	yes	yes	0	0	1	4	0				1		19.508	19.508	2	0.011778	13130	DP1141_19	98.105	24.154			0	250	292	237	446	659	659		1	9606
EDGLAQQQTQLNLR	Unmodified	1612.8169	0.81689726	184	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					17.858	17.858	2	0.01173	10356	DP1141_16	94.692	48.23			0	251	184	238	447	660	660		1	9606
EDGNEEDKENQGDETQGQQPPQR	Unmodified	2627.0968	0.096773109	249	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	3.5	0.5			1	1		12.821	12.821	3	1.151E-05	3876	DP1141_19	113.33	101.37			107120000	252	249	239	448;449	661;662;663;664;665;666	666		6	9606
EDITQSAQHALR	Unmodified	1367.6793	0.67934115	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				16.155	16.155	3	0.001805	7751	DP1141_17	123.11	87.434			31708000	253	297	240	450	667	667		0	9606
EDMASVLEMSVQFLR	2 Oxidation (M)	1785.8277	0.82772122	345	Q5JUK2	SOHLH1	Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1	yes	yes	0	2	0	5	0					1	25.126	25.126	2	0.020955	22030	DP1141_20	54.066	11.823			2918200	254	345	241	451	668	668	319;320	1	9606
EDQTEYLEER	Unmodified	1310.5626	0.56263964	97;94	P07900;Q58FF6;P08238;Q58FF7	HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	0	3	0			1			16.667	16.667	2	4.6525E-66	8349	DP1141_18	192.91	145.04			9893400	255	94;97	242	452	669	669		1	9606
EDSVKPGAHLTVK	Unmodified	1379.7409	0.74087877	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4.33	0.471				2	1	14.019	14.019	2;3	4.6040000000000005E-158	4611	DP1141_19	209.8	136.95			541880000	256	193	243	453;454;455	670;671;672	671		3	9606
EDTEEHHLRDYFEEYGK	Unmodified	2195.9396	0.93959117	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				1		18.541	18.541	3	0.0027751	11647	DP1141_19	191.63	168.81			0	257	134	244	456	673	673		1	9606
EDTEEYNLR	Unmodified	1167.5044	0.50439647	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		16.069	16.069	2	0.00027806	7654	DP1141_19	157.34	119.62			63627000	258	193	245	457	674	674		0	9606
EEAISNMVVALK	Oxidation (M)	1318.6803	0.68025235	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					17.74	17.74	2	2.8550999999999998E-21	10176	DP1141_16	166.07	112.98			293840000	259	302;39	246	458	675;676;677	676	31	3	9606
EEAISNMVVALK	Unmodified	1302.6853	0.68533773	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					19.835	19.835	2	0.00081233	13434	DP1141_16	154.84	105.31			140550000	260	302;39	246	459	678	678		1	9606
EEEIAALVIDNGSGMCK	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	248	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	2.75	0.829		2	1	1		23.353	23.353	2	3.7738E-35	18861	DP1141_19	171.62	92.581			34165000	261	248	247	460;461;462;463	679;680;681;682;683	683	219	5	9606
EEEWDPEYTPK	Unmodified	1421.5987	0.59869079	457;435	Q9NYF8;Q9Y2W1	BCLAF1;THRAP3	Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3	no	no	0	0	0	2	0		1				18.205	18.205	2	1.7126E-06	11132	DP1141_17	164.68	123.25			5930500	262	435;457	248	464	684	684		0	9606
EEFLIPIYHQVAVQFADLHDTPGR	Unmodified	2794.4079	0.40786432	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.89	2				1	22.521	22.521	3;4	1.4755E-13	17386	DP1141_16	129.2	107.85			29738000	263	302	249	465;466;467	685;686;687	686		3	9606
EEGIGPENLR	Unmodified	1112.5462	0.54620171	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.877	16.877	2	1.3678E-08	8729	DP1141_16	144.09	97.007			313150000	264	302	250	468	688;689	688		2	9606
EFVEAVLELR	Unmodified	1203.6499	0.6499385	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		21.545	21.545	2	5.9456E-154	16122	DP1141_19	219.54	160.94			0	265	56	251	469	690	690		1	9606
EGLPLMVFANWR	Unmodified	1431.7333	0.73329097	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.5	1			1		23.877	23.877	2	9.267799999999999E-67	19438	DP1141_16	233.57	172.01			149770000	266	302	252	470;471	691;692;693;694	691		4	9606
EGLPLMVFANWR	Oxidation (M)	1447.7282	0.7282056	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	3	0.816		1	1	1		22.738	22.738	2	0.0062624	17955	DP1141_17	109.48	85.247			38943000	267	302	252	472;473;474	695;696;697	695	266	3	9606
EGPAVVGQFIQDVK	Unmodified	1485.7827	0.78274359	371	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				20.505	20.505	2	3.4776E-05	14629	DP1141_17	141.71	97.286			17533000	268	371	253	475	698;699	699		2	9606
EGPYSISVLYGDEEVPR	Unmodified	1908.9105	0.91052288	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				20.804	20.804	2	0.020392	15163	DP1141_17	80.96	42.939			15887000	269	131	254	476	700	700		1	9606
EGRPSGEAFVELESEDEVK	Unmodified	2105.9753	0.97530798	147	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	1	5	0					1	18.583	18.583	2	9.0641E-19	12318	DP1141_20	156.72	95.605			19095000	270	147	255	477	701	701		1	9606
EGSIEIDIPVPK	Unmodified	1295.6973	0.69728262	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		20.033	20.033	2	8.4497E-15	13762	DP1141_16	160.75	121.5			553880000	271	405	256	478;479;480	702;703;704;705;706;707	703		6	9606
EGSLSPASVGSDTLSDLGISSLQDGLALHIR	Unmodified	3094.5782	0.57823671	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.011	23.011	3	7.3182E-06	18272	DP1141_16	59.598	42.769			6269400	272	302	257	481	708	708		1	9606
EHHFGSSGMTLHER	Unmodified	1623.7212	0.72122274	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.33	0.471	2	1				14.747	14.747	3;4	6.9349E-06	5447	DP1141_17	152	128.16			83733000	273	457	258	482;483;484	709;710;711	711		1	9606
EHVIEALRR	Unmodified	1121.6305	0.63054046	142	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	1	5	0					1	14.73	14.73	2	0.028243	5965	DP1141_20	101.6	16.537			12919000	274	142	259	485	712	712		0	9606
EIAQDFKTDLR	Unmodified	1334.683	0.68302954	361	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	4.43	1.4	1				6	17.182	17.182	2;3	1.1786000000000001E-257	9877	DP1141_20	246.86	159.97			16982000	275	361	260	486;487;488;489;490;491;492	713;714;715;716;717;718;719	716		6	9606
EIAQEFKTDLR	Unmodified	1348.6987	0.69867961	349	Q5TEC6	HIST2H3PS2	Histone H3	yes	yes	0	0	1	5	0					2	17.249	17.249	2;3	1.3715E-05	9943	DP1141_20	145.46	53.409			7203699999.999999	276	349	261	493;494	720;721;722	720		2	9606
EIETYHNLLEGGQEDFESSGAGK	Unmodified	2509.1245	0.12449141	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	1	1		1			19.434	19.434	3	1.8716E-160	12736	DP1141_16	219.21	183.16		+	781890000	277	27	262	495;496	723;724	723		0	9606
EIFLSQPILLELEAPLK	Unmodified	1952.1234	0.12341618	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	3	1.63	1		1		1	24.442	24.442	2	1.3539E-06	20145	DP1141_18	179.6	118.18			16349000	278	218;155	263	497;498;499	725;726;727	726		3	9606
EIIDLVLDR	Unmodified	1084.6128	0.61282471	251;413	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	2.5	0.5		1	1			21.328	21.328	2	3.4948E-54	15814	DP1141_17	190.52	66.828			694300000	279	251;413	264	500;501	728;729	728		2	9606
EIILDDDECPLQIFR	Unmodified	1874.9084	0.90841439	204	P55196	MLLT4	Afadin	yes	yes	0	0	0	2.5	0.5		1	1			22.676	22.676	2	6.7318E-23	17908	DP1141_17	163.9	120.29			4434400	280	204	265	502;503	730;731;732	730		3	9606
EILGTAQSVGCNVDGR	Unmodified	1674.7995	0.79953264	144	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.541	17.541	2	0.00010672	10601	DP1141_20	102.87	55.167			141890000	281	144	266	504	733	733		0	9606
EIQTAVR	Unmodified	815.45012	0.45011648	206;136	Q16778;P33778;P23527;P06899;Q96A08;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	0	5	0					1	13.858	13.858	2	5.3386000000000004E-30	4572	DP1141_20	164.78	46.765			47044000	282	136;206	267	505	734	734		1	9606
EITALAPSTMK	Unmodified	1160.6111	0.61111015	209;248	P60709;P63267;P68133;P68032;P62736;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	2	0		1				17.406	17.406	2	0.0042816	9750	DP1141_17	112.71	63.955			27910000	283	209;248	268	506	735	735		1	9606
EITALAPSTMK	Oxidation (M)	1176.606	0.60602477	209;248	P60709;P63267;P68133;P68032;P62736;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		16.17	16.17	2	0.010359	7803	DP1141_19	139.98	69.454			73720000	284	209;248	268	507	736	736	201	0	9606
EIVHLQAGQCGNQIGAK	Unmodified	1821.9156	0.91556545	253	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3	0			1			16.217	16.217	3	8.2907E-49	7627	DP1141_18	194.55	0			414000000	285	253	269	508	737	737		0	9606
EKFEEMIQQIK	Oxidation (M)	1437.7174	0.71736614	183	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	3	0			1			16.934	16.934	2	0.026236	8852	DP1141_18	91.087	35.717			24336000	286	183	270	509	738	738	179	0	9606
EKPQTLPSAVKGDEK	Unmodified	1625.8625	0.86245047	299	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	2	4	0				2		13.95	13.95	3;4	0.00077218	4438	DP1141_19	113.43	89.616			41924000	287	299	271	510;511	739;740;741	741		3	9606
EKPTTALLDK	Unmodified	1114.6234	0.6233894	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	2	0		1				15.155	15.155	2	0.0013524	6053	DP1141_17	133.75	41.886			45383000	288	297	272	512	742	742		0	9606
EKPYFPIPEEYTFIQNVPLEDR	Unmodified	2723.3483	0.34828376	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	1	0	1					22.221	22.221	3	4.4749E-44	17014	DP1141_16	172.34	88.232			42164000	289	267	273	513	743	743		1	9606
EKQDEQVGLPGK	Unmodified	1326.6779	0.67794416	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	1.5	0.5	2	2				14.551	14.551	2;3	9.7872E-156	5241	DP1141_17	265.77	194.96			133960000	290	110	274	514;515;516;517	744;745;746;747	746		2	9606
ELAEDGYSGVEVR	Unmodified	1422.6627	0.66268803	135	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	2.5	1.5	1			1		17.526	17.526	2	9.253400000000001E-54	10067	DP1141_19	185.33	124.5			286590000	291	135	275	518;519	748;749;750;751	751		4	9606
ELASSEQNKNHINNELKR	Unmodified	2123.0719	0.07194275	394	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	2	2	0		1				14.026	14.026	4	0.03667	4397	DP1141_17	78.249	47.276			4795400	292	394	276	520	752	752		1	9606
ELEQTLQASEEQLQQSK	Unmodified	1987.9698	0.96982867	392	Q92805	GOLGA1	Golgin subfamily A member 1	yes	yes	0	0	0	4	0				1		25.177	25.177	2	0.0001062	21514	DP1141_19	116.54	48.003			2119700	293	392	277	521	753;754;755	754		3	9606
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	Unmodified	3054.4869	0.48691928	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	3.5	0.5			1	1		21.934	21.934	3	0	16486	DP1141_18	316.84	277.05			138540000	294	105	278	522;523	756;757;758	757		3	9606
ELIIGDR	Unmodified	814.45487	0.45486751	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			17.021	17.021	2	1.3155E-08	8874	DP1141_18	135.87	29.104			136420000	295	139	279	524;525	759;760	760		2	9606
ELIPNIPFQMLLR	Oxidation (M)	1598.8854	0.88543452	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	1.12	1	1	1	1		23.136	23.136	2	0.0036025	18281	DP1141_18	122.96	71.686			363690000	296	112	280	526;527;528;529	761;762;763;764;765	764	117	5	9606
ELIPNIPFQMLLR	Unmodified	1582.8905	0.8905199	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					24.089	24.089	2	1.5134E-41	19792	DP1141_16	180.09	128.56			31220000	297	112	280	530	766;767	766		2	9606
ELISNASDALDK	Unmodified	1274.6354	0.63541065	97	P08238;P14625	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	yes	no	0	0	0	3	0			1			17.561	17.561	2	1.3783E-05	9802	DP1141_18	162.36	104.13			0	298	97	281	531	768	768		1	9606
ELLYGGTSPTAETILK	Unmodified	1691.8982	0.89816728	66	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3	0			1			19.934	19.934	2	0.0094197	13593	DP1141_18	98.156	52.558			10426000	299	66	282	532	769	769		1	9606
ELNEALELK	Unmodified	1057.5655	0.56554017	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.5	0.5			1	1		17.931	17.931	2	8.9861E-08	10425	DP1141_18	128.6	57.786			206210000	300	76	283	533;534	770;771	770		1	9606
ELQCLTPR	Unmodified	1015.5121	0.51206481	291	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	3	0			1			16.172	16.172	2	0.025104	7561	DP1141_18	98.997	45.442			0	301	291	284	535	772	772		1	9606
EMNDAAMFYTNRVLK	2 Oxidation (M)	1833.839	0.83895461	269	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	2	1	3	0			1			15.98	15.98	3	0.034286	7211	DP1141_18	42.785	9.1684			23063000	302	269	285	536	773	773	238;239	1	9606
EMRLKEK	Oxidation (M)	948.50625	0.50625115	420	Q9GZS0	DNAI2	Dynein intermediate chain 2, axonemal	yes	yes	0	1	2	2	0		1				16.081	16.081	2	0.015689	7398	DP1141_17	101.69	18.404			3702300	303	420	286	537	774	774	389	0	9606
ENMDTDDERQYQDFLEDLEEDEAIRK	Oxidation (M)	3261.3892	0.38917489	398	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	1	2	3	0			1			13.846	13.846	4	0.012875	4033	DP1141_18	41.76	29.544			66663000	304	398	287	538	775	775	358	1	9606
ENPFMLLEAER	Oxidation (M)	1363.6442	0.6442012	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	0	3	0.816		1	1	1		21.322	21.322	2	0.00013573	15819	DP1141_19	122.94	59.245			251760000	305	343	288	539;540;541	776;777;778;779;780	780	317	4	9606
ENPFMLLEAER	Unmodified	1347.6493	0.64928657	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2	0		1				21.799	21.799	2	9.0567E-43	16532	DP1141_17	183.85	77.695			81836000	306	343	288	542	781;782;783	782		3	9606
ENPFMLLEAERR	Unmodified	1503.7504	0.7503976	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	3	0			1			20.149	20.149	3	0.0097392	13828	DP1141_18	87.568	40.379			5420700	307	343	289	543	784	784		1	9606
EPAELPK	Unmodified	782.41742	0.41741937	68	O96009	NAPSA	Napsin-A	yes	yes	0	0	0	2	0		1				18.005	18.005	1	0.0046833	10728	DP1141_17	118.69	10.942			21381000	308	68	290	544	785	785		1	9606
EPQVYVLAPPQEELSK	Unmodified	1825.9462	0.9461801	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	0	3.12	1.36	1	2	2	1	2	19.687	19.687	2;3	4.9101E-72	13327	DP1141_19	238.03	177.59		+	2558100000	309	11;10	291	545;546;547;548;549;550;551;552	786;787;788;789;790;791;792;793;794;795;796;797;798;799	795		13	
EPQVYVLDPPKEELSK	Unmodified	1869.9724	0.97239485	10	CON__ENSEMBL:ENSBTAP00000024462			yes	yes	0	0	1	3.5	0.5			1	1		18.331	18.331	3	0.0023594	11360	DP1141_19	96.489	74.676		+	450360000	310	10	292	553;554	800;801;802	802		3	
EQGVLSFWR	Unmodified	1120.5665	0.56654322	80	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	no	0	0	0	4	0				1		21.232	21.232	2	9.9614E-67	15567	DP1141_19	194.29	97.223			18304000	311	80	293	555	803	803		1	9606
EQIVPKPEEEVAQK	Unmodified	1622.8516	0.85155143	128	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					2	15.605	15.605	2;3	8.6849E-54	7332	DP1141_20	184.03	100.17			150440000	312	128	294	556;557	804;805	805		2	9606
EQQIVIQSSGGLSK	Unmodified	1472.7835	0.78347187	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			16.892	16.892	2	2.1399E-83	8718	DP1141_18	200.93	120.96			21040000	313	159	295	558	806	806		1	9606
EQQIVIQSSGGLSKDDIENMVK	Oxidation (M)	2433.2057	0.20571862	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			18.034	18.034	3	1.8762E-05	10437	DP1141_18	115.74	87.41			34215000	314	159	296	559	807;808;809	807	164	3	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	Oxidation (M)	3342.5166	0.51664078	308	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	1	0	3	0			1			20.2	20.2	3	4.6438E-08	13962	DP1141_18	66.894	49.918			14619000	315	308	297	560	810	810	301	1	9606
ESGPSLVKPSQTLSLTCTASGFSLSDK	Unmodified	2796.3851	0.38513955	12	CON__ENSEMBL:ENSBTAP00000033053			yes	yes	0	0	1	5	0					1	20.01	20.01	3	2.9803E-05	14538	DP1141_20	75.191	48.981		+	17426000	316	12	298	561	811	811		0	
ESLCQAALGLILK	Unmodified	1414.7854	0.78538612	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		23.451	23.451	2	5.0621E-14	18947	DP1141_16	154.85	78.75			150580000	317	405	299	562;563;564	812;813;814;815;816;817	813		6	9606
ESTLHLVLR	Unmodified	1066.6135	0.61349341	104	P62987;P62979;P0CG47;P0CG48;A0A2R8Y422	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	2.67	1.7	1	1			1	17.592	17.592	2	3.1019E-73	10016	DP1141_17	211.39	156.02			1576999999.9999998	318	104	300	565;566;567	818;819;820;821	820		3	9606
ESVSTASDQPSHSLER	Unmodified	1728.7915	0.79147037	383	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2.5	0.5		1	1			14.522	14.522	3	0.011052	5295	DP1141_17	111.07	77.869			12977000	319	383	301	568;569	822;823	822		2	9606
ESYSIYVYK	Unmodified	1150.5546	0.55464113	136	Q16778;P33778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	5	0					1	18.526	18.526	2	0.0072233	12148	DP1141_20	98.523	58.456			3656099999.9999995	320	136	302	570	824	824		1	9606
ESYSVYVYK	Unmodified	1136.539	0.53899107	206	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	0	5	0					2	17.835	17.835	1;2	1.1306E-46	10972	DP1141_20	199.29	136.82			12512000000	321	206	303	571;572	825;826	826		1	9606
ETDNAAIIMKVDK	Oxidation (M)	1462.7337	0.73374448	48	O60234	GMFG	Glia maturation factor gamma	yes	yes	0	1	1	1	0	1					14.643	14.643	3	0.0301	5180	DP1141_16	81.676	31.193			19881000	322	48	304	573	827	827	39	1	9606
ETGVDLTKDNMALQR	Oxidation (M)	1705.8305	0.83049842	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			16.318	16.318	3	0.019983	7731	DP1141_18	58.268	25.83			69484000	323	159	305	574	828	828	165	0	9606
ETGYVVERPSTTK	Unmodified	1465.7413	0.7412727	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		2				14.754	14.754	2;3	2.595E-158	5559	DP1141_17	217.22	158.07			21633000	324	435	306	575;576	829;830;831	831		3	9606
EVATNSELVQSGK	Unmodified	1360.6834	0.68342347	15	CON__P02533;P02533;CON__Q04695;CON__Q9QWL7;Q04695	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	yes	no	0	0	0	3.5	1.5		1			1	15.229	15.229	2	9.6066E-115	6222	DP1141_17	232	185.54		+	152300000	325	15	307	577;578	832;833	832		1	9606
EVDEQMLNVQNK	Oxidation (M)	1461.677	0.67695789	93;253;308	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3	1.63	1		1		1	15.532	15.532	2	2.8397E-21	6676	DP1141_18	166.09	97.463			263020000	326	93;253;308	308	579;580;581	834;835;836;837	835	69	4	9606
EVFFMNTQSIVQLVQR	Oxidation (M)	1953.9982	0.99823245	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					22.035	22.035	2	1.5613000000000001E-245	16745	DP1141_16	252.97	216.52			274050000	327	302	309	582	838;839	839	267	2	9606
EVPAVPETLKK	Unmodified	1209.6969	0.69688869	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.782	15.782	3	0.017038	7264	DP1141_19	91.701	62.904			110460000	328	126	310	583	840	840		0	9606
EVQLAQIFEPLSR	Unmodified	1528.8249	0.82494275	341	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				22.378	22.378	2	0.030232	17439	DP1141_17	74.962	14.564			2423700	329	341	311	584	841	841		1	9606
EVVTLRCNHR	Unmodified	1282.6564	0.65643764	315	Q14416	GRM2	Metabotropic glutamate receptor 2	yes	yes	0	0	1	5	0					1	14.884	14.884	2	0.0055498	6160	DP1141_20	119.17	30.804			0	330	315	312	585	842	842		1	9606
EVYQQQQYGSGGR	Unmodified	1498.6801	0.68006943	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	4.5	0.5				1	1	14.909	14.909	2	1.4862999999999998E-21	6260	DP1141_20	164.33	120.7			1332500000	331	408	313	586;587	843;844;845;846;847	846		5	9606
EWGSGSDTLR	Unmodified	1106.4993	0.49925152	119	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1	0	1					16.904	16.904	2	2.4208E-08	8841	DP1141_16	141.52	74.027			8132900	332	119	314	588	848	848		1	9606
EWLKDTCGANAK	Unmodified	1391.6503	0.65034921	57	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	1	5	0					2	15.477	15.477	2;3	8.2519E-134	7096	DP1141_20	223.84	170.06			83585000	333	57	315	589;590	849;850	850		2	9606
EWLLGMLGAESAK	Oxidation (M)	1419.7068	0.70680145	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	0	1	0	1					21.038	21.038	2	0.02373	15437	DP1141_16	88.155	35.365			3917400	334	110	316	591	851	851	108	0	9606
EYEAEGIAKDGAK	Unmodified	1379.6569	0.65687437	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2	1	1		1			14.659	14.659	2;3	1.4833E-20	5049	DP1141_18	163.66	78.919			15621000	335	427	317	592;593	852;853	853		1	9606
EYFGEFGEIEAIELPMDPK	Oxidation (M)	2229.0188	0.018752696	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	1	0	4.33	0.471				2	1	22.73	22.73	2;3	0	17902	DP1141_19	297.03	254.55			127160000	336	408	318	594;595;596	854;855;856;857;858;859	856	374	6	9606
EYQDLLNVK	Unmodified	1120.5764	0.57643921	98;91	P07197;P17661;Q16352;P07196;P12036;P08670	NEFM;DES;INA;NEFL;NEFH;VIM	Neurofilament medium polypeptide;Desmin;Alpha-internexin;Neurofilament light polypeptide;Neurofilament heavy polypeptide;Vimentin	no	no	0	0	0	3	0			1			18.734	18.734	2	0.0070859	11548	DP1141_18	120.62	78.969			17563000	337	91;98	319	597	860	860		0	9606
EYQELMNTK	Unmodified	1154.5278	0.52777445	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					16.706	16.706	2	0.0030778	8283	DP1141_16	112.41	70.124		+	136100000	338	26	320	598	861	861		1	9606
EYQELMNVK	Oxidation (M)	1168.5434	0.54342452	73	P04259	KRT6B	Keratin, type II cytoskeletal 6B	no	no	0	1	0	1	0	1					15.93	15.93	2	0.034206	7205	DP1141_16	89.296	42.87			5238600	339	73	321	599	862	862	51	1	9606
EYVRPGLPVTFIDEVDSEEAPQAAK	Unmodified	2759.3654	0.36539038	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.5	0.5		1	1			21.019	21.019	3	9.684799999999999E-52	15148	DP1141_18	171.9	145.05			121880000	340	343	322	600;601	863;864	864		2	9606
FAAATGATPIAGR	Unmodified	1202.6408	0.6407708	3	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	0	0	0	4	0				1		16.319	16.319	2	0.014763	8060	DP1141_19	115.23	75.685			0	341	3	323	602	865	865		1	9606
FAAGHDAEGSHSHVHFDEK	Unmodified	2076.9038	0.90381479	419	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					1	14.061	14.061	4	0.010515	4913	DP1141_20	71.143	27.611			19590000	342	419	324	603	866;867;868	868		3	9606
FADLSEAANR	Unmodified	1092.52	0.51998696	98	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			16.722	16.722	2	3.4953E-30	8459	DP1141_18	162.25	92.625			0	343	98	325	604	869	869		1	9606
FALPQYLK	Unmodified	978.55385	0.55385327	17	CON__P02663			yes	yes	0	0	0	4	0				1		19.93	19.93	2	2.4756E-06	13755	DP1141_19	128.38	45.711		+	195630000	344	17	326	605	870;871	871		2	
FALPQYLKTVYQHQK	Unmodified	1863.0043	0.004304102	17	CON__P02663			yes	yes	0	0	1	4	0				1		19.329	19.329	3	4.1082E-32	12941	DP1141_19	174.46	117.94		+	204930000	345	17	327	606	872;873	873		2	
FANPFPAAVR	Unmodified	1088.5767	0.57671398	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.144	19.144	2	3.291E-07	12761	DP1141_19	125.81	82.9			184180000	346	82	328	607;608	874;875;876;877	877		4	9606
FASFIDK	Unmodified	826.4225	0.42250475	28;26;73;30	P04259;CON__P13647;P13647;CON__O95678;O95678;CON__P35908v2;CON__P35908;P35908;CON__Q9R0H5;CON__Q6NXH9;CON__Q7Z794;Q7Z794;CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q14CN4;Q3SY84;Q7RTS7;Q86Y46	KRT6B;KRT5;KRT75;KRT2;KRT77;KRT72;KRT71;KRT74;KRT73	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73	no	no	0	0	0	2	0		1				18.005	18.005	2	0.024432	10634	DP1141_17	115.46	52.481		+	81315000	347	73;26;28;30	329	609	878	878		1	9606
FASFIDKVR	Unmodified	1081.592	0.59202969	28;26;73;30	P04259;CON__P13647;P13647;CON__O95678;O95678;CON__P35908v2;CON__P35908;P35908;CON__Q9R0H5;CON__Q6NXH9;CON__Q7Z794;Q7Z794;CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q14CN4;Q3SY84;Q7RTS7;Q86Y46	KRT6B;KRT5;KRT75;KRT2;KRT77;KRT72;KRT71;KRT74;KRT73	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73	no	no	0	0	1	1	0	1					17.8	17.8	2	6.344E-23	10267	DP1141_16	157.58	68.283		+	0	348	73;26;28;30	330	610	879	879		1	9606
FCEKAMELIR	Acetyl (Protein N-term);Oxidation (M)	1353.6421	0.64209271	318	Q14691	GINS1	DNA replication complex GINS protein PSF1	yes	yes	1	1	1	5	0					1	19.355	19.355	2	0.035806	13466	DP1141_20	40.882	10.715			0	349	318	331	611	880	880	305	1	9606
FEDVVNQSSPK	Unmodified	1248.5986	0.59863121	268	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	4	0				1		15.88	15.88	2	9.0024E-114	7437	DP1141_19	218.47	131.14			129370000	350	268	332	612	881;882	881		2	9606
FELTGIPPAPR	Unmodified	1196.6554	0.65535823	108	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.234	19.234	2	0.0069372	12424	DP1141_18	103.74	20.533			496200000	351	108	333	613	883	883		1	9606
FEPYANPTKR	Unmodified	1221.6142	0.6142217	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3	0			1			15.214	15.214	3	0.011425	5963	DP1141_18	85.533	26.553			12812000	352	194	334	614	884	884		1	9606
FFVAPFPEVFGK	Unmodified	1383.7227	0.72270951	16	CON__P02662			yes	yes	0	0	0	2.5	1.12	1	1	1	1		23.093	23.093	2	2.7171E-14	18452	DP1141_19	157.99	129.3		+	255020000	353	16	335	615;616;617;618	885;886;887;888;889;890;891	890		7	
FGAYIVDGLR	Unmodified	1109.5869	0.58694431	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	4	0				1		20.03	20.03	2	0.020656	13949	DP1141_19	90.709	36.292			38233000	354	302;39	336	619	892	892		1	9606
FGDPVVQSDMKHWPFQVINDGDKPK	Oxidation (M)	2899.3963	0.39631336	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	1	2	3	0			1			19.034	19.034	4	0.00082416	12173	DP1141_18	77.689	59.496			50316000	355	105	337	620	893	893	99	0	9606
FGEVVDCTLK	Unmodified	1166.5642	0.56415996	309	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4.5	0.5				1	1	17.682	17.682	2	1.2546E-15	10249	DP1141_19	156.35	0			380900000	356	309	338	621;622	894;895;896	894		3	9606
FGFPEGSVELYAEK	Unmodified	1571.7508	0.75077476	135	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		20.731	20.731	2	0.027532	14925	DP1141_19	74.698	49.312			28471000	357	135	339	623	897	897		1	9606
FGGEHVPNSPFQVTALAGDQPSVQPPLR	Unmodified	2944.4832	0.48315453	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				20.505	20.505	3	4.9017E-41	14637	DP1141_17	155.04	126.02			18462000	358	131	340	624	898	898		0	9606
FGPYESYDSR	Unmodified	1219.5146	0.51456723	344	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	3	0			1			17.533	17.533	2	0.0065935	9708	DP1141_18	106.68	91.745			20485000	359	344	341	625	899	899		0	9606
FHSSAMVNSHRK	Acetyl (Protein N-term);Oxidation (M)	1457.6834	0.68338067	354	Q6P179	ERAP2	Endoplasmic reticulum aminopeptidase 2	yes	yes	1	1	1	1	0	1					18.664	18.664	2	0.017898	11645	DP1141_16	70.816	38.827			0	360	354	342	626	900	900	323	1	9606
FIEIAAR	Unmodified	818.46504	0.46503826	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				17.306	17.306	2	2.5938E-05	9605	DP1141_17	127.66	65.319			188830000	361	267	343	627	901	901		0	9606
FIGPSPEVVR	Unmodified	1099.6026	0.60259438	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		17.667	17.667	2	6.6672E-10	10203	DP1141_17	138.06	77.234			632880000	362	112	344	628;629;630;631	902;903;904;905	903		4	9606
FIGPSPEVVRK	Unmodified	1227.6976	0.69755739	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	1.5	0.5	2	2				16.143	16.143	2;3	3.2532E-53	7511	DP1141_16	185.33	123.56			191570000	363	112	345	632;633;634;635	906;907;908;909;910;911	908		6	9606
FIIGSVSEDNSEDEISNLVK	Unmodified	2194.0641	0.064122984	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.534	21.534	2	0.0029712	16631	DP1141_16	94.781	69.547			466340000	364	302	346	636	912	912		1	9606
FKMPDMNIK	2 Oxidation (M)	1154.5464	0.54640141	293	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	2	1	2	0		1				19.65	19.65	2	2.9167E-16	13265	DP1141_17	145.16	43.555			0	365	293	347	637	913	913	254;255	1	9606
FLEEFITPIVK	Unmodified	1334.7486	0.74858991	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	0.816	1	1	1			22.086	22.086	2	3.0555E-53	16755	DP1141_18	189.38	127.27			110100000	366	110	348	638;639;640	914;915;916;917	917		4	9606
FLEQQNQVLETK	Unmodified	1475.762	0.76200815	30	CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q14CN4;Q3SY84;Q7RTS7;Q86Y46	KRT72;KRT71;KRT74;KRT73	Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73	yes	no	0	0	0	1.5	0.5	1	1				17.613	17.613	2	1.262E-21	10049	DP1141_16	167.12	49.233		+	51408000	367	30	349	641;642	918;919;920	918		3	9606
FLEQQNQVLQTK	Unmodified	1474.778	0.77799256	74;28	P04264;CON__P04264;CON__P35908v2;CON__P35908;P35908;CON__Q9R0H5;CON__Q6NXH9;CON__Q7Z794;Q7Z794	KRT1;KRT2;KRT77	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b	no	no	0	0	0	3	1.63	1		1		1	17.307	17.307	2	4.9586E-180	9498	DP1141_18	238.01	120.12		+	1110700000	368	74;28	350	643;644;645	921;922;923;924;925;926	924		6	9606
FLHKHDLDLICR	Unmodified	1565.8137	0.81366656	218;155	P62136;P36873	PPP1CA;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	4	0.816			1	1	1	17.052	17.052	3	0.0014992	9606	DP1141_20	159.94	123.83			232300000	369	218;155	351	646;647;648	927;928;929;930	930		4	9606
FLNLNLR	Unmodified	888.51814	0.51813647	55	O75342	ALOX12B	Arachidonate 12-lipoxygenase, 12R-type	yes	yes	0	0	0	1	0	1					18.14	18.14	2	0.003253	10864	DP1141_16	120.76	49.378			260280000	370	55	352	649	931	931		0	9606
FLNVLSPR	Unmodified	944.54435	0.54435122	123	P17936	IGFBP3	Insulin-like growth factor-binding protein 3	yes	yes	0	0	0	1	0	1					19.035	19.035	2	0.013847	12199	DP1141_16	100.19	44.818			69610000	371	123	353	650	932	932		1	9606
FLSDVYPDGFK	Unmodified	1286.6183	0.61830402	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.034	20.034	2	1.8284E-14	13556	DP1141_18	191.45	116.41			50536000	372	81	354	651	933	933		1	9606
FLTVMMK	2 Oxidation (M)	900.4449	0.44489645	220	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	2	0	5	0					1	15.97	15.97	2	0.013065	7793	DP1141_20	92.692	25.658			63956000	373	220	355	652	934	934	208;209	0	9606
FLYDDNQR	Unmodified	1069.4829	0.48287317	110;273	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	1.5	0.5	1	1				16.887	16.887	2	2.0639E-26	8896	DP1141_17	168.74	83.477			186410000	374	110;273	356	653;654	935;936;937	936		3	9606
FLYECPWR	Unmodified	1169.5328	0.53280025	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			20.114	20.114	2	2.0293000000000002E-55	13983	DP1141_17	190.71	125.46			412020000	375	112	357	655;656;657	938;939;940;941;942	941		5	9606
FLYIWPNAR	Unmodified	1178.6237	0.62366417	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		21.426	21.426	2	1.8417E-16	15958	DP1141_17	158.38	95.232			1320900000	376	427	358	658;659;660;661	943;944;945;946;947	944		5	9606
FNADEFEDMVAEKR	Oxidation (M)	1715.7461	0.74610008	142	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	5	0					1	18.334	18.334	3	0.0046709	11824	DP1141_20	93.228	62.23			42464000	377	142	359	662	948	948	149	1	9606
FNEEHIPDSPFVVPVASPSGDAR	Unmodified	2466.1816	0.18155278	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					20.205	20.205	3	0.0032931	14005	DP1141_16	58.373	33.188			0	378	131	360	663	949	949		1	9606
FNSHESAAHAIVSVNGTTIEGHVVK	Unmodified	2603.3092	0.30921291	145	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	0	4	0				1		17.181	17.181	4	0.00019435	9810	DP1141_19	87.511	63.104			68036000	379	145	361	664	950;951;952	951		3	9606
FPEILQK	Unmodified	873.496	0.49600404	201	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			18.306	18.306	2	3.0824E-05	10991	DP1141_18	132.96	55.586			0	380	201	362	665	953	953		1	9606
FPGQLNADLR	Unmodified	1129.588	0.58800695	93;253;308	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	0	3	0.816		1	1	1		18.256	18.256	2	0.00012261	11118	DP1141_17	122.33	72.888			841770000	381	93;253;308	363	666;667;668	954;955;956;957	954		4	9606
FPGQLNADLRK	Unmodified	1257.683	0.68296996	93;253;308	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	1	3.33	0.471			2	1		16.696	16.696	2;3	0.0088467	8452	DP1141_18	90.149	50.232			655170000	382	93;253;308	364	669;670;671	958;959;960;961	958		3	9606
FPSLLTHNENMVAK	Oxidation (M)	1615.8028	0.8028271	243	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					1	17.541	17.541	3	0.0024647	10598	DP1141_20	94.402	59.634			59358000	383	243	365	672	962	962	218	0	9606
FQAQSLGTTYIYDIPEMFR	Oxidation (M)	2295.0882	0.088169665	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					22.35	22.35	3	0.0043211	17250	DP1141_16	80.541	63.611			46443000	384	302	366	673	963	963	268	1	9606
FQAQSLGTTYIYDIPEMFR	Unmodified	2279.0933	0.093255043	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.686	23.686	2	0	19231	DP1141_16	265.77	215.84			17518000	385	302	366	674	964;965;966	964		3	9606
FQNALLVR	Unmodified	959.55525	0.55525025	21	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	2	0		1				18.116	18.116	2	0.030306	10851	DP1141_17	105.2	36.716		+	0	386	21	367	675	967	967		1	9606
FQQEKEELINKK	Unmodified	1532.8199	0.81985738	394	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	2	2	0		1				14.191	14.191	3	0.022506	4586	DP1141_17	122.33	40.701			22365000	387	394	368	676	968	968		1	9606
FQSIVIGCALEDQKK	Unmodified	1734.8975	0.89745577	67	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	1	5	0					1	18.569	18.569	3	0.00099962	12230	DP1141_20	111.66	75.065			62499000	388	67	369	677	969	969		1	9606
FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK	Oxidation (M)	3528.6905	0.69050605	361	Q71DI3	HIST2H3A	Histone H3.2	yes	yes	0	1	0	5	0					1	25.454	25.454	3	2.8308E-31	22594	DP1141_20	133.95	114.8			9345700	389	361	370	678	970	970	325	1	9606
FSALQQAVPTESTDNRR	Unmodified	1918.9497	0.94970235	278	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	2	0		1				16.896	16.896	3	0.010908	8803	DP1141_17	73.022	43.667			9833700	390	278	371	679	971	971		1	9606
FSTHESAAHAIVSVNGTTIEGHVVK	Unmodified	2590.314	0.31396394	268	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	4	0				2		17.302	17.302	4;5	0.00099324	9740	DP1141_19	70.15	46.082			74262000	391	268	372	680;681	972;973	972		1	9606
FSVCVLGDQQHCDEAK	Unmodified	1891.8193	0.8192818	243	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	17.616	17.616	3	2.2752E-07	10593	DP1141_20	147.39	129			23005000	392	243	373	682	974	974		0	9606
FSWFVDDVEVNTATTKPR	Unmodified	2111.0324	0.032369346	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	1	3.29	1.03		2	2	2	1	20.628	20.628	2;3	0	14607	DP1141_18	309.49	265.89		+	737700000	393	11;10	374	683;684;685;686;687;688;689	975;976;977;978;979;980;981;982;983;984;985;986;987;988;989;990	984		16	
FTITPPTAQVVGVLK	Unmodified	1569.913	0.91302948	197	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	4	0				1		20.832	20.832	2	0.0030278	15088	DP1141_19	99.343	72.372			22529000	394	197	375	690	991	991		1	9606
FTQDTQPHYIYSPR	Unmodified	1751.8267	0.82673367	313	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.877	16.877	3	0.035351	8809	DP1141_16	65.495	43.583			23604000	395	313	376	691	992	992		1	9606
FTQTSGETTDADKEPAGEDK	Unmodified	2125.9288	0.92875171	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.5		1	1			14.087	14.087	3	3.0916E-09	4504	DP1141_18	178.22	143.95			97436000	396	173	377	692;693	993;994;995;996	996		4	9606
FVDGLMIHSGDPVNYYVDTAVR	Oxidation (M)	2483.1791	0.17910994	135	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		20.508	20.508	3	0.017041	14503	DP1141_19	56.488	42.34			16301000	397	135	378	694	997	997	141	0	9606
FVIHCNSPVWGADKCEELLEK	Unmodified	2530.1985	0.19846517	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	1	4	0				1		19.028	19.028	4	1.0117E-44	12457	DP1141_19	174.87	147.15			323100000	398	56	379	695	998	998		1	9606
FVINYDYPNSSEDYIHR	Unmodified	2130.9647	0.96468371	122	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.434	19.434	3	0.0081324	12950	DP1141_18	89.506	53.795			16381000	399	122	380	696	999	999		1	9606
FVINYDYPNSSEDYVHR	Unmodified	2116.949	0.94903365	393	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			19.134	19.134	3	0.0127	12385	DP1141_18	81.428	53.75			19853000	400	393	381	697	1000;1001	1000		2	9606
FVMEVEVDGQK	Oxidation (M)	1295.6068	0.60675306	297	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	1	0	2	0		1				16.578	16.578	2	0.0054023	8351	DP1141_17	120.31	82.578			0	401	297	382	698	1002	1002	258	1	9606
FVTPSEPVAHSR	Unmodified	1325.6728	0.67279921	41	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	0	1.5	0.5	1	1				15.34	15.34	3	0.00063096	6200	DP1141_16	140.78	108.53			92000000	402	41	383	699;700	1003;1004	1003		2	9606
FVVMVTPEDLK	Oxidation (M)	1292.6686	0.66862503	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	2.33	1.25	1	1		1		19.322	19.322	2	1.1561E-10	12704	DP1141_16	154.56	91.973			699290000	403	302;39	384	701;702;703	1005;1006;1007;1008	1005	32	4	9606
FVVMVTPEDLK	Unmodified	1276.6737	0.67371041	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					20.335	20.335	2	3.076E-81	14131	DP1141_16	205.12	155.4			684240000	404	302;39	384	704	1009;1010	1009		2	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	Unmodified	3101.4003	0.40027234	93	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	4	0				1		20.43	20.43	3	2.1778E-06	14714	DP1141_19	88.976	31.366			6894400	405	93	385	705	1011	1011		1	9606
FYPLEIDYGQDEEAVK	Unmodified	1914.8887	0.8887248	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				21.005	21.005	2	0.00031113	15484	DP1141_17	113.95	83.807			8809000	406	101	386	706	1012	1012		1	9606
FYTLIPHDFGMK	Oxidation (M)	1483.717	0.71697221	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2	0		1				19.605	19.605	2	0.0011637	13178	DP1141_17	136.52	95.435			112920000	407	101	387	707	1013	1013	85	1	9606
GAALVEAGLEGEAR	Unmodified	1341.6888	0.6888432	60	O75807	PPP1R15A	Protein phosphatase 1 regulatory subunit 15A	yes	yes	0	0	0	2	0		1				14.368	14.368	3	0.008256	4609	DP1141_17	85.522	41.097			3028100	408	60	388	708	1014	1014		0	9606
GAEAANVTGPGGVPVQGSK	Unmodified	1694.8588	0.85876208	249	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.88	15.88	2	2.8678E-38	7528	DP1141_19	173.19	140.15			34573000	409	249	389	709	1015	1015		1	9606
GAEHITTYTFNTHK	Unmodified	1618.774	0.77396981	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4.5	0.5				1	1	15.683	15.683	3	0	7010	DP1141_19	263.89	234.68			1904399999.9999998	410	367	390	710;711	1016;1017	1016		2	9606
GALQNIIPASTGAAK	Unmodified	1410.7831	0.78307794	75	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.528	18.528	2	0.0029874	11610	DP1141_19	98.156	49.362			52351000	411	75	391	712	1018	1018		1	9606
GANAVGYTNYPDNVVFK	Unmodified	1827.8792	0.87916317	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				19.37	19.37	2	0.0025868	12960	DP1141_17	100.02	52.05			283430000	412	112	392	713;714	1019;1020	1020		2	9606
GAQDVAGGSNPGAHNPSANLAR	Unmodified	2059.9784	0.97837672	41	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	0	3	1.63	1		1		1	15.121	15.121	3	0.0014643	5936	DP1141_16	104.68	65.786			147640000	413	41	393	715;716;717	1021;1022;1023;1024	1022		4	9606
GATQQILDEAER	Unmodified	1329.6525	0.6524577	255	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			17.782	17.782	2	0.00012954	10212	DP1141_18	136.48	62.174			12258000	414	255	394	718	1025	1025		1	9606
GAVEIIFK	Unmodified	875.51165	0.5116541	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.164	19.164	2	3E-06	12298	DP1141_18	130.04	9.4182			0	415	82	395	719;720	1026;1027	1026		2	9606
GAWSNVLR	Unmodified	901.477	0.47699993	80	P05141;P12236;P12235	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	yes	no	0	0	0	1	0	1					18.531	18.531	2	0.0037466	11371	DP1141_16	121.29	71.869			25041000	416	80	396	721	1028	1028		0	9606
GAYGGGYGGYDDYNGYNDGYGFGSDR	Unmodified	2716.0375	0.037467316	147	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			1			20.298	20.298	2	0.00026483	14021	DP1141_18	66.335	62.556			0	417	147	397	722	1029	1029		1	9606
GCGTVLLSGPR	Unmodified	1115.5757	0.5757277	283	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	17.077	17.077	2	5.5172E-05	9742	DP1141_20	137.13	98.997			19368000	418	283	398	723	1030	1030		1	9606
GCTATLGNFAK	Unmodified	1138.5441	0.54409322	116	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.965	16.965	2	0.032137	9238	DP1141_19	86.882	43.967			113630000	419	116	399	724	1031	1031		1	9606
GDATVSYEDPPTAK	Unmodified	1449.6624	0.66235368	270	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	3	0.816		1	1	1		15.83	15.83	2	4.4312E-185	7390	DP1141_19	229.82	159.76			523150000	420	270	400	725;726;727	1032;1033;1034;1035;1036;1037;1038;1039	1039		8	9606
GDEELDSLIK	Unmodified	1117.5503	0.55028404	102	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					1	19.163	19.163	2	1.1053E-07	13181	DP1141_20	136.27	72.061			408080000	421	102	401	728	1040	1040		1	9606
GDLGPASPSQELGSQPVPGGDGAPALGK	Unmodified	2558.2613	0.26125966	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.33	0.471		2	1			19.014	19.014	2;3	8.8238E-104	12168	DP1141_18	233.57	210.66			129920000	422	343	402	729;730;731	1041;1042;1043;1044;1045	1045		5	9606
GDNQAGGAAAAAAAPEPPPR	Unmodified	1787.8551	0.85507368	41	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	0	3	0			1			15.517	15.517	2	0.01537	6618	DP1141_18	75.574	14.139			14960000	423	41	403	732	1046;1047	1046		2	9606
GDSVIVVLR	Unmodified	956.56548	0.56548059	229	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	5	0					1	18.541	18.541	2	1.2163E-07	12181	DP1141_20	125.81	84.512			64076000	424	229	404	733	1048	1048		1	9606
GEATVSFDDPPSAK	Unmodified	1419.6518	0.65178899	153;391	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	no	no	0	0	0	3.5	0.5			1	1		16.949	16.949	2	5.3492E-84	8810	DP1141_18	204.56	161.12			1600999999.9999998	425	153;391	405	734;735	1049;1050;1051	1049		3	9606
GEEGHDPKEPEQLR	Unmodified	1619.754	0.75396265	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				2		13.628	13.628	3;4	8.0965E-23	3794	DP1141_19	168.76	115.87			43913000	426	193	406	736;737	1052;1053;1054;1055	1054		4	9606
GEENLMDAQVK	Oxidation (M)	1248.5656	0.56561652	190	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	1	0	3	0			1			15.014	15.014	2	6.019E-05	5849	DP1141_18	138.08	58.59			15196000	427	190	407	738	1056;1057	1057	185	2	9606
GEGAGPPPPLPPAQPGAEGGGDR	Unmodified	2079.9974	0.99738082	433	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			2			16.829	16.829	2	1.8701999999999998E-50	8566	DP1141_18	176.29	138.93			0	428	433	408	739;740	1058;1059	1058		2	9606
GEGAGQPSTSAQGQPAAPAPQK	Unmodified	2033.9766	0.97664538	198	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	0	5	0					1	14.268	14.268	2	3.3744E-160	5224	DP1141_20	221.85	151.99			7669900	429	198	409	741	1060;1061	1060		2	9606
GEGAGQPSTSAQGQPAAPAPQKR	Unmodified	2190.0778	0.077756409	198	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	1	5	0					1	13.648	13.648	3	3.0354E-53	3395	DP1141_20	183.21	162.66			9300000	430	198	410	742	1062;1063;1064;1065	1062		4	9606
GEKGDTDIMSDLFGLHPKK	Oxidation (M)	2103.0307	0.030654786	327	Q15413	RYR3	Ryanodine receptor 3	yes	yes	0	1	2	5	0					1	24.698	24.698	2	8.9054E-05	21535	DP1141_20	124.42	77.384			8234200	431	327	411	743	1066;1067	1067	309	2	9606
GFAFVQYVNER	Unmodified	1328.6513	0.65133548	95	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.33	20.33	2	3.0701E-14	14343	DP1141_19	155.42	117.61			115860000	432	95	412	744	1068;1069	1068		2	9606
GFAFVTFDDHDTVDKIVVQK	Unmodified	2280.1426	0.14264808	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		20.23	20.23	3	0.00018453	14324	DP1141_19	111.34	12			376550000	433	193	413	745	1070;1071	1071		2	9606
GFAFVTFESPADAK	Unmodified	1485.714	0.71399532	158	P38159;Q96E39;O75526;Q8N7X1	RBMX;RBMXL1;RBMXL2;RBMXL3	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3	yes	no	0	0	0	4	0				1		21.132	21.132	2	0.024823	15612	DP1141_19	80.834	50.516			61720000	434	158	414	746	1072	1072		1	9606
GFCFITYTDEEPVKK	Unmodified	1832.8655	0.86548694	42	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	1	4	0				1		19.329	19.329	3	4.1835E-06	12769	DP1141_19	183.06	158.19			370570000	435	42	415	747	1073	1073		1	9606
GFGDGYNGYGGGPGGGNFGGSPGYGGGR	Unmodified	2494.0323	0.03226278	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4.33	0.471				2	1	19.241	19.241	2;3	1.3194E-75	12867	DP1141_19	183.73	171.58			140060000	436	134	416	748;749;750	1074;1075;1076	1074		3	9606
GFGFILFKDAASVEK	Unmodified	1627.861	0.86099391	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	1	4	0				1		21.308	21.308	2	0.0062072	15769	DP1141_19	96.334	51.72			0	437	408	417	751	1077	1077		1	9606
GFGFVTFDDHDPVDK	Unmodified	1694.7577	0.75765105	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				2		20.13	20.13	2;3	1.3990000000000001E-84	13941	DP1141_19	208.33	165.03			235170000	438	134	418	752;753	1078;1079;1080;1081;1082	1081		5	9606
GFGFVTFDDHDPVDKIVLQK	Unmodified	2276.1477	0.14773345	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				3		20.932	20.932	2;3;4	1.4448E-158	15284	DP1141_19	200.76	173.33			2286800000	439	134	419	754;755;756	1083;1084;1085;1086	1086		4	9606
GFGFVTFSSMAEVDAAMAAR	2 Oxidation (M)	2095.9343	0.93431156	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	2	0	4	0				2		21.633	21.633	2;3	8.0713E-10	16314	DP1141_19	134.04	87.665			45631000	440	134	420	757;758	1087;1088	1087	137;138	1	9606
GFGFVTFSSMAEVDAAMAARPHSIDGR	2 Oxidation (M)	2858.3116	0.31159745	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	2	1	4	0				2		20.428	20.428	3;4	1.4514E-05	14493	DP1141_19	80.109	69.851			619940000	441	134	421	759;760	1089;1090	1090	137;138	2	9606
GFGFVTFSSMAEVDAAMAARPHSIDGR	Oxidation (M)	2842.3167	0.31668283	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	4	0				2		21.232	21.232	3;4	0.0084968	15303	DP1141_19	48.872	31.309			107250000	442	134	421	761;762	1091;1092	1091	137;138	2	9606
GFGFVTYATVEEVDAAMNAR	Oxidation (M)	2162.9943	0.99426928	100	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	0	4	0				1		22.234	22.234	2	0.0030943	17294	DP1141_19	89.663	69.2			29275000	443	100	422	763	1093	1093	81	1	9606
GFGFVTYATVEEVDAAMNARPHK	Oxidation (M)	2525.2009	0.20090801	100	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	4	0				2		20.33	20.33	3;4	5.0233E-13	14496	DP1141_19	130.02	109.72			223790000	444	100	423	764;765	1094;1095	1095	81	2	9606
GFGFVTYATVEEVDAAMNARPHK	Unmodified	2509.206	0.20599339	100	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	1	4	0				1		21.935	21.935	4	0.008704	16759	DP1141_19	52.318	30.085			33026000	445	100	423	766	1096	1096		1	9606
GFGFVTYSCVEEVDAAMCARPHK	Oxidation (M)	2646.1665	0.16651312	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	1	4	0				1		19.329	19.329	4	0.0027026	12906	DP1141_19	73.984	61.182			90260000	446	193	424	767	1097	1097	186	1	9606
GFGFVTYSCVEEVDAAMCARPHK	Unmodified	2630.1716	0.17159849	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		20.72	20.72	4	0.0031951	14929	DP1141_19	67.168	51.931			44806000	447	193	424	768	1098	1098		1	9606
GFLGCFPDIIGTHK	Unmodified	1560.7759	0.77588407	463	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	3	0			1			21.234	21.234	3	0.0024277	15355	DP1141_18	100.22	75.968			6253500	448	463	425	769	1099	1099		0	9606
GFQQISFVNSIATSK	Unmodified	1625.8413	0.8413211	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	0		1				20.405	20.405	2	0.00010216	14525	DP1141_17	139.76	90.41			32432000	449	110	426	770	1100	1100		0	9606
GFSEEHNTWEPEK	Unmodified	1588.6794	0.67940073	172	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	5	0					1	16.404	16.404	3	0.0091765	8664	DP1141_20	93.839	74.162			22056000	450	172	427	771	1101	1101		0	9606
GFSLLATEDKEALKK	Unmodified	1648.9036	0.903587	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	3	1.63	1		1		1	17.441	17.441	3	4.0011E-07	10361	DP1141_20	116.98	77.586			333910000	451	101	428	772;773;774	1102;1103;1104	1104		1	9606
GFSSGSAVVSGGSR	Unmodified	1253.6	0.60002819	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	2	0.816	1	1	1			15.645	15.645	2	1.0304E-68	6707	DP1141_17	195.51	161.42		+	302680000	452	28	429	775;776;777	1105;1106;1107;1108	1107		4	9606
GFSSGSAVVSGGSRR	Unmodified	1409.7011	0.70113922	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	1	1	0	2					14.643	14.643	2;3	1.5788E-09	5171	DP1141_16	127.51	100.19		+	25186000	453	28	430	778;779	1109;1110	1109		1	9606
GFVDDIIQPSSTR	Unmodified	1433.7151	0.71505795	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	1			1		1	19.83	19.83	2	1.1736E-233	13348	DP1141_18	255.39	180.92			194080000	454	82	431	780;781	1111;1112;1113	1111		3	9606
GGAAVDPDSGLEHSAHVLEK	Unmodified	1987.9599	0.95993268	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1.8	0.748	2	2	1			16.693	16.693	3;4	2.3409E-09	8339	DP1141_17	134.82	91.864			1366800000	455	101	432	782;783;784;785;786	1114;1115;1116;1117;1118;1119;1120;1121;1122	1117		9	9606
GGAYYPVTVK	Unmodified	1053.5495	0.54949617	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.911	16.911	2	0.011734	8648	DP1141_18	100.02	76.249			726120000	456	427	433	787	1123	1123		1	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	Unmodified	2382.9446	0.94456998	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				15.341	15.341	2	3.2175E-35	6511	DP1141_17	142.58	107.86		+	629450000	457	74	434	788;789	1124;1125	1125		2	9606
GGGGNFGPGPGSNFR	Unmodified	1376.6222	0.62216062	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	3.33	1.7	1			1	1	17.019	17.019	2	5.495E-162	9136	DP1141_19	231.17	198.85			4278399999.9999995	458	134	435	790;791;792	1126;1127;1128;1129;1130;1131;1132	1128		6	9606
GGGGSGGYYGQGGMSGGGWR	Oxidation (M)	1819.7332	0.73324399	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	1	0	4	0				1		16.847	16.847	2	0.0048345	8970	DP1141_19	107.35	85.976			56944000	459	146	436	793	1133	1133	154	1	9606
GGGHVAQIYAIR	Unmodified	1240.6677	0.66765425	221	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	16.297	16.297	3	0.021605	8447	DP1141_20	82.417	48.495			67006000	460	221	437	794	1134	1134		1	9606
GGKPEPPAMPQPVPTA	Oxidation (M)	1588.7919	0.79192806	135	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	1	4	0				1		15.782	15.782	2	0.014475	7249	DP1141_19	77.279	54.043			69963000	461	135	438	795	1135	1135	142	0	9606
GGNFGFGDSR	Unmodified	1012.4363	0.43625733	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.228	17.228	2	2.5373E-07	9590	DP1141_19	129.42	89.775			2089099999.9999998	462	134	439	796	1136	1136		1	9606
GGNNDSWMNPLAK	Oxidation (M)	1418.6249	0.62486274	451	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	1	0	2	0		1				18.005	18.005	2	0.0038331	10725	DP1141_17	105.2	48.563			5728900	463	451	440	797	1137	1137	413	1	9606
GGSDDSSKDPIDVNYEK	Unmodified	1824.8014	0.80136636	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0.707	1	2	1			16.165	16.165	2;3	1.2196E-10	7525	DP1141_16	147.7	96.889			466690000	464	101	441	798;799;800;801	1138;1139;1140;1141;1142	1138		4	9606
GGSGGGGSISGGGYGSGGGSGGR	Unmodified	1740.7412	0.74116614	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					14.455	14.455	2	0.0113	4873	DP1141_16	64.537	42.305		+	0	465	28	442	802	1143	1143		1	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	Unmodified	3222.2743	0.27429656	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	2	1				1	15.508	15.508	3	1.016E-278	7131	DP1141_20	236.57	233.6		+	633050000	466	27	443	803;804	1144;1145;1146;1147;1148;1149	1148		6	9606
GGSWVVIDSSINPR	Unmodified	1485.7576	0.75759147	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.5	1			1		19.913	19.913	2	6.684099999999999E-268	13616	DP1141_16	257.72	188.44			670610000	467	302	444	805;806	1150;1151;1152;1153	1150		4	9606
GHENVEAAQAEYIEK	Unmodified	1686.7849	0.78492843	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	5	0					1	15.891	15.891	3	0.0002252	7665	DP1141_20	123.76	77.968			48115000	468	82	445	807	1154;1155	1154		2	9606
GHPLPENQGNAQAPCWGR	Unmodified	1987.9071	0.90712603	451	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	2	0		1				16.394	16.394	3	7.762E-09	8024	DP1141_17	144.41	102.09			29129000	469	451	446	808	1156	1156		1	9606
GHYTEGAELVDSVLDVVR	Unmodified	1957.9745	0.97452012	93;253;308	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	4	0				1		22.282	22.282	3	3.4773000000000004E-77	17229	DP1141_19	160.03	127.7			0	470	93;253;308	447	809	1157	1157		1	9606
GIPAPEEERTR	Unmodified	1253.6364	0.6364137	65	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	1	4	0				1		14.336	14.336	3	0.0071208	4955	DP1141_19	113.44	81.227			16689000	471	65	448	810	1158	1158		1	9606
GIPHLVTHDAR	Unmodified	1214.652	0.65200419	133	P22090;P62701;Q8TD47	RPS4Y1;RPS4X;RPS4Y2	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	4	0				1		14.903	14.903	3	1.1325E-09	5813	DP1141_19	151.22	107.92			46163000	472	133	449	811	1159;1160	1159		2	9606
GIPVVEHKVEK	Unmodified	1233.7081	0.70812208	110;273	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	1	1.33	0.471	2	1				14.093	14.093	2;3	0.0005196	4358	DP1141_16	133.75	107.69			36887000	473	110;273	450	812;813;814	1161;1162;1163;1164	1161		3	9606
GIRPAINVGLSVSR	Unmodified	1437.8416	0.84159587	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			17.93	17.93	3	0.0035267	10281	DP1141_18	99.941	83.168			13943000	474	139	451	815	1165	1165		0	9606
GISHVIVDEIHER	Unmodified	1502.7841	0.78414057	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.33	0.471	2	1				17.266	17.266	2;3	9.4163E-06	9680	DP1141_17	119.25	76.444			58937000	475	288	452	816;817;818	1166;1167;1168	1168		1	9606
GKLEAIITPPPAK	Unmodified	1333.7969	0.79693709	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	1	3.67	0.471			1	2		17.034	17.034	2;3	3.3597E-13	9142	DP1141_19	164.81	128.9			628480000	476	56	453	819;820;821	1169;1170;1171	1170		1	9606
GKSETILSPPPEKR	Unmodified	1537.8464	0.84640648	437	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	2	4	0				1		14.411	14.411	3	0.0044365	5114	DP1141_19	123.95	89.178			30188000	477	437	454	822	1172	1172		1	9606
GKVEEVELPVEK	Unmodified	1354.7344	0.73439641	410	Q99873;Q9NR22	PRMT1;PRMT8	Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8	yes	no	0	0	1	1	0	1					16.525	16.525	2	0.013323	8163	DP1141_16	93.561	62.874			0	478	410	455	823	1173	1173		1	9606
GLAPDLPEDLYHLIK	Unmodified	1692.9087	0.90867238	226	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	21.982	21.982	3	3.8218E-05	17432	DP1141_20	140.01	106.78			21381000	479	226	456	824	1174	1174		0	9606
GLAPVQAYLHIPDIIK	Unmodified	1747.0032	0.0032414695	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.83	1.57	2	1		2	1	21.72	21.72	2;3	6.190800000000001E-45	16200	DP1141_16	177.16	144.3			565140000	480	112	457	825;826;827;828;829;830	1175;1176;1177;1178;1179;1180;1181;1182;1183	1177		9	9606
GLEEPEMDPK	Oxidation (M)	1159.5067	0.50670466	340	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	1	0	2	0		1				14.698	14.698	2	0.0036321	5356	DP1141_17	106.68	60.554			0	481	340	458	831	1184	1184	315	1	9606
GLKYELISETGGSHDKR	Unmodified	1888.9643	0.96428978	297	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	yes	no	0	0	2	3	0			1			15.917	15.917	4	0.030894	7235	DP1141_18	65.943	45.707			42521000	482	297	459	832	1185	1185		0	9606
GLPFGCSK	Unmodified	864.41637	0.41637351	147;146;205	P31943;P55795;P31942	HNRNPH1;HNRNPH2;HNRNPH3	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H3	no	no	0	0	0	4	0.816			1	1	1	17.017	17.017	2	1.7036E-10	9161	DP1141_19	134.66	84.544			398890000	483	147;205;146	460	833;834;835	1186;1187;1188;1189;1190;1191	1188		6	9606
GMGGHGYGGAGDASSGFHGGHFVHMR	2 Oxidation (M)	2574.0666	0.066556571	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	2	0	4.5	0.5				2	2	14.878	14.878	4;5	3.7001E-05	5846	DP1141_19	75.064	54.808			1907599999.9999998	484	146	461	836;837;838;839	1192;1193;1194;1195;1196	1193	155;156	5	9606
GMGGHGYGGAGDASSGFHGGHFVHMR	Unmodified	2542.0767	0.076727327	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4	0				1		16.194	16.194	5	3.6534E-05	8004	DP1141_19	76.533	64.615			58859000	485	146	461	840	1197	1197		1	9606
GMGGHGYGGAGDASSGFHGGHFVHMR	Oxidation (M)	2558.0716	0.071641949	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	1	0	4.5	0.5				1	1	15.718	15.718	5	2.9266E-12	7145	DP1141_19	103.92	90.924			382760000	486	146	461	841;842	1198;1199	1198	155;156	1	9606
GMTLVTPLQLLLFASK	Oxidation (M)	1746.9954	0.9953789	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	1	0	1					24.947	24.947	2	5.0254E-16	20947	DP1141_16	158.11	129.68			11189000	487	288	462	843	1200;1201;1202;1203	1200	252	4	9606
GNENANGAPAITLLIR	Unmodified	1622.874	0.87401821	461	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					20.734	20.734	2	4.6315E-05	14739	DP1141_16	106.54	71.74			4828400	488	461	463	844	1204	1204		0	9606
GNFGGSFAGSFGGAGGHAPGVAR	Unmodified	2033.9456	0.94562002	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			18.434	18.434	3	5.7453E-36	11207	DP1141_18	161.1	141.94			132980000	489	194	464	845	1205	1205		0	9606
GNIPTLNR	Unmodified	883.48756	0.48756462	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.13	16.13	2	2.0927E-06	7493	DP1141_16	132.09	44.065			0	490	302	465	846	1206	1206		1	9606
GPAREPQVYVLAPPQEELSK	Unmodified	2207.1586	0.15863249	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	1	3.33	1.25		1	1		1	18.615	18.615	3	0.010745	11563	DP1141_18	82.36	53.887		+	249550000	491	11;10	466	847;848;849	1207;1208;1209;1210	1208		4	
GPFPIIV	Unmodified	741.44251	0.44251191	18	CON__P02666			yes	yes	0	0	0	4	0.816			1	1	1	23.232	23.232	1	0.01709	18695	DP1141_19	102.87	102.87		+	296570000	492	18	467	850;851;852	1211;1212;1213	1212		1	
GPLQSVQVFGR	Unmodified	1186.6459	0.64585618	221	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	19.266	19.266	2	8.5204E-67	13295	DP1141_20	197.3	152.85			62132000	493	221	468	853	1214;1215;1216	1215		3	9606
GQHFYAVERRAYCEGCYVATLEK	Unmodified	2806.2956	0.29555345	331	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	2	5	0					1	18.739	18.739	5	0.03414	12835	DP1141_20	33.171	6.1163			459230000	494	331	469	854	1217	1217		0	9606
GQIGAPMPGK	Oxidation (M)	970.4906	0.49060109	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1	0	1					14.352	14.352	2	0.013981	4505	DP1141_16	104.06	70.541			4395900	495	112	470	855	1218	1218	118	1	9606
GQIGAPMPGK	Unmodified	954.49569	0.49568646	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				15.354	15.354	2	0.00025979	6464	DP1141_17	118.74	87.439			122210000	496	112	470	856	1219	1219		1	9606
GSFSDTGLGDGK	Unmodified	1139.5095	0.50948185	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				16.358	16.358	2	0.0060766	8081	DP1141_17	109.83	66.061			69966000	497	457	471	857	1220	1220		0	9606
GSNTFTVVPK	Unmodified	1048.5553	0.55530983	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	1		1		1		16.78	16.78	2	0.0090986	8933	DP1141_19	104.2	38.954			467910000	498	343	472	858;859	1221;1222	1222		2	9606
GSPLVVISQGK	Unmodified	1083.6288	0.62880913	335	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	2	0		1				17.705	17.705	2	0.00015736	10141	DP1141_17	119.22	81.412			13185000	499	335	473	860	1223	1223		1	9606
GSSEQAESDNMDVPPEDDSKEGAGEQK	Oxidation (M)	2851.1574	0.15738404	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	1	1	2	0		1				14.229	14.229	3	6.9168E-05	4756	DP1141_17	79.845	71.831			3218300	500	297	474	861	1224	1224	259	1	9606
GSVLEPEGTVEIK	Unmodified	1356.7137	0.71366097	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.039	18.039	2	0.00016168	10805	DP1141_16	117.52	44.641			744340000	501	302	475	862	1225	1225		1	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	Unmodified	3311.3008	0.30084566	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0.816	1	1	1			15.735	15.735	3	1.3856E-14	7008	DP1141_18	85.448	35.073		+	653200000	502	74	476	863;864;865	1226;1227;1228	1228		3	9606
GSYSCEVTHEGSTVTK	Unmodified	1740.7625	0.76247843	31	CON__Q1RMN8			yes	yes	0	0	0	3.75	1.64	1			1	2	14.863	14.863	2;3	0	6118	DP1141_20	318.47	244.49		+	6152899999.999999	503	31	477	866;867;868;869	1229;1230;1231;1232;1233;1234	1233		6	
GTGGTAVMSFLKSVRDK	Oxidation (M)	1768.9142	0.91416847	359	Q6ZQW0	IDO2	Indoleamine 2,3-dioxygenase 2	yes	yes	0	1	2	4	0				1		17.828	17.828	2	0.028604	10426	DP1141_19	86.014	40.353			187620000	504	359	478	870	1235	1235	324	1	9606
GTGIVSAPVPK	Unmodified	1024.5917	0.59169534	116	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.17	16.17	2	0.036455	7876	DP1141_19	83.647	52.117			226390000	505	116	479	871	1236	1236		1	9606
GTHFVQLCCQR	Unmodified	1404.6391	0.63907301	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		16.023	16.023	3	0.018364	7383	DP1141_18	97.813	64.436			640280000	506	427	480	872;873;874	1237;1238;1239	1238		1	9606
GTPGPPPAHGAALQPHPR	Unmodified	1756.9121	0.91213505	331	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	3	0			1			14.19	14.19	3	1.4795E-09	4529	DP1141_18	109.55	84.231			3426800	507	331	481	875	1240	1240		0	9606
GTPLDTEVPMER	Oxidation (M)	1359.634	0.63403044	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	1.12	1	1	1	1		16.878	16.878	2	2.4588999999999998E-40	8819	DP1141_18	176.6	147.43			704390000	508	112	482	876;877;878;879	1241;1242;1243;1244;1245;1246;1247;1248	1247	119	8	9606
GTPLDTEVPMER	Unmodified	1343.6391	0.63911582	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	1	1		1			18.014	18.014	2	0.0006604	10522	DP1141_18	121.6	64.429			117270000	509	112	482	880;881	1249;1250;1251;1252	1252		4	9606
GVEEEEEDGEMRE	Oxidation (M)	1552.5835	0.58351101	228	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	1	5	0					1	14.673	14.673	2	0.025872	5934	DP1141_20	71.555	70.116			45862000	510	228	483	882	1253	1253	211	1	9606
GVEGLIDIENPNR	Unmodified	1424.726	0.72595699	306	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	5	0					1	19.659	19.659	2	0.0010572	13924	DP1141_20	138.22	100.66			12544000	511	306	484	883	1254	1254		1	9606
GVISDILDWK	Unmodified	1144.6128	0.61282471	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.137	23.137	2	2.0054E-31	18388	DP1141_16	176.09	112.67			44508000	512	302	485	884	1255;1256	1255		2	9606
GVLKVFLENVIR	Unmodified	1385.8395	0.83947061	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	23.411	23.411	3	1.0082E-20	19527	DP1141_20	132.56	112.18			0	513	234	486	885	1257	1257		1	9606
GVTIASGGVLPNIHPELLAK	Unmodified	1985.131	0.13096118	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4.33	0.471				2	1	20.223	20.223	2;3	8.7806E-265	14212	DP1141_19	249.58	199.12			703860000	514	56	487	886;887;888	1258;1259;1260	1259		3	9606
GVTIASGGVLPR	Unmodified	1125.6506	0.6506072	437	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	0	4	0				1		17.928	17.928	2	1.5599E-66	10672	DP1141_19	195.05	134.14			126500000	515	437	488	889	1261;1262	1261		2	9606
GYFEYIEENK	Unmodified	1290.5768	0.57683314	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	3	0			1			19.598	19.598	2	4.3255E-11	12973	DP1141_18	143.73	113.96			0	516	267	489	890	1263	1263		1	9606
GYGFVHFETQEAAER	Unmodified	1739.7903	0.79034816	113	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	3	0			1			18.434	18.434	2	6.1246E-07	11220	DP1141_18	121.68	78.051			27431000	517	113	490	891	1264	1264		0	9606
GYSFTTTAER	Unmodified	1131.5197	0.51965261	209;248	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4.5	0.5				1	1	16.746	16.746	2	7.2084E-80	9130	DP1141_20	199.29	166.4			42162000	518	209;248	491	892;893	1265;1266	1266		2	9606
HAPHCLSEEEGEQDRPR	Unmodified	2045.8973	0.8973492	54	O75190	DNAJB6	DnaJ homolog subfamily B member 6	yes	yes	0	0	1	4	0				1		13.671	13.671	4	0.007386	3905	DP1141_19	83.243	67.236			4411900	519	54	492	894	1267	1267		0	9606
HAVSEGTKAVTKYTSSK	Unmodified	1792.9319	0.93192702	206;136	Q16778;P33778;P23527;Q8N257;Q96A08;A0A2R8Y619;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D	no	no	0	0	2	5	0					2	14.032	14.032	3;4	0.00044327	4841	DP1141_20	138.81	107.94			31900000	520	136;206	493	895;896	1268;1269	1268		1	9606
HAVTEAEIQQLK	Unmodified	1365.7252	0.72522871	406	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	0	2	0		1				16.258	16.258	2	9.4781E-41	7871	DP1141_17	194.12	151.77			5456400	521	406	494	897	1270	1270		1	9606
HAVTEAEIQQLKR	Unmodified	1521.8263	0.82633974	406	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	4	0				1		15.487	15.487	3	0.00093264	6876	DP1141_19	103.88	79.605			9041700	522	406	495	898	1271	1271		1	9606
HDEAWMILKQVHDTNMRAK	2 Oxidation (M)	2354.126	0.12596893	362	Q7L1I2	SV2B	Synaptic vesicle glycoprotein 2B	yes	yes	0	2	2	2	0		1				19.475	19.475	3	0.031056	13000	DP1141_17	48.623	23.036			0	523	362	496	899	1272	1272	327;328	1	9606
HDLDLICR	Unmodified	1040.5073	0.50731378	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	3.2	1.33	1		2	1	1	16.873	16.873	1;2	5.0669999999999997E-113	8960	DP1141_19	214.25	160.9			1848399999.9999998	524	218;155	497	900;901;902;903;904	1273;1274;1275;1276;1277;1278;1279	1276		6	9606
HFAGAVCYETTQFVEK	Unmodified	1885.8669	0.86688392	448	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	2	0		1				18.405	18.405	3	0.0019702	11351	DP1141_17	101.72	56.916			9631000	525	448	498	905	1280;1281	1281		2	9606
HFLVPASR	Unmodified	925.51339	0.51338544	0	P0DPI3;A0A0U1RRI6;A0A0U1RR11			yes	no	0	0	0	4	0				1		15.288	15.288	2	1.9371E-25	6479	DP1141_19	164.1	0			268370000	526	0	499	906	1282;1283	1282		2	9606
HFSGLEEAVYR	Unmodified	1306.6306	0.63060004	190	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			17.756	17.756	2	0.01574	10118	DP1141_18	116.3	77.342			0	527	190	500	907	1284	1284		1	9606
HGDLPDIQIK	Unmodified	1134.6033	0.60332266	256	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.339	17.339	2	0.011865	9557	DP1141_16	99.815	36.281			25811000	528	256	501	908	1285	1285		1	9606
HGEEVTPEDVLSAAMYPDVFAHFK	Oxidation (M)	2704.2479	0.24791778	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	1.5	2			2		21.833	21.833	3;4	2.1832E-15	16466	DP1141_16	133.74	115.43			259340000	529	112	502	909;910;911;912	1286;1287;1288;1289;1290;1291;1292	1287	120	7	9606
HGFEAASIKEER	Unmodified	1372.6735	0.67352749	152	P35580	MYH10	Myosin-10	yes	yes	0	0	1	1	0	1					14.607	14.607	3	0.0027207	5091	DP1141_16	150.09	117			1277700	530	152	503	913	1293	1293		0	9606
HGINCFINR	Unmodified	1129.5451	0.54509627	255	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			16.318	16.318	2	4.2123E-31	7822	DP1141_18	172.03	133.21			35930000	531	255	504	914	1294	1294		1	9606
HGNALWLNER	Unmodified	1208.6051	0.60505399	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.224	17.224	2	0.0010698	9149	DP1141_18	133.13	97.19			32564000	532	81	505	915	1295	1295		0	9606
HGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQHGSR	Unmodified	4402.8018	0.80176893	32	CON__Q86YZ3;Q86YZ3	HRNR	Hornerin	yes	no	0	0	0	1.33	0.471	2	1				14.459	14.459	6;7	4.9206E-23	4823	DP1141_16	97.62	85.475		+	38970000	533	32	506	916;917;918	1296;1297;1298;1299;1300;1301	1296		6	9606
HGSLGFLPR	Unmodified	982.53485	0.53484916	162	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2.5	1.5	1			1		17.333	17.333	2	1.2731E-113	9577	DP1141_16	219.74	152.7			79803000	534	162	507	919;920	1302;1303;1304	1302		3	9606
HGVDVEVQGPHEAR	Unmodified	1528.7383	0.73825301	428	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1	0	1					14.352	14.352	3	0.00084996	4714	DP1141_16	133.47	91.045			15302000	535	428	508	921	1305;1306	1305		2	9606
HGVQELEIELQSQLSK	Unmodified	1836.9581	0.95814177	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.67	0.471	1	2				20.512	20.512	2;3	0	14728	DP1141_17	312.25	264.4		+	36289000	536	27	509	922;923;924	1307;1308;1309;1310;1311;1312	1309		6	9606
HGVQELEIELQSQLSKK	Unmodified	1965.0531	0.053104788	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1.5	0.5	1	1				19.67	19.67	3	4.8054E-35	13423	DP1141_17	160.64	138.73		+	109380000	537	27	510	925;926	1313;1314	1314		2	9606
HGYIGEFEIIDDHR	Unmodified	1699.7954	0.79543354	220	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	18.698	18.698	3	1.325E-83	12426	DP1141_20	201.09	167.78			78196000	538	220	511	927	1315;1316	1315		2	9606
HIAEVSQEVTR	Unmodified	1267.6521	0.65206377	215	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	4	0				1		14.647	14.647	3	0.0026808	5428	DP1141_19	96.015	61.294			3731900	539	215	512	928	1317	1317		1	9606
HIDFSLR	Unmodified	886.4661	0.4661009	177	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	17.386	17.386	2	1.32E-58	10271	DP1141_20	190.71	57.906			219170000	540	177	513	929	1318	1318		1	9606
HIEIQVLGDK	Unmodified	1150.6346	0.63462279	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			17.336	17.336	2	0.00024141	9607	DP1141_18	119.22	72.767			295650000	541	81	514	930;931	1319;1320	1320		2	9606
HILLAVANDEELNQLLK	Unmodified	1932.068	0.068026571	56;437	O75367;Q9P0M6	H2AFY;H2AFY2	Core histone macro-H2A.1;Core histone macro-H2A.2	no	no	0	0	0	4	0				2		21.433	21.433	2;3	0	16008	DP1141_19	314.29	266.18			62003000	542	56;437	515	932;933	1321;1322;1323;1324;1325	1323		5	9606
HLDGEEDGSSDQSQASGTTGGR	Unmodified	2189.9057	0.90572486	450	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	3	0			1			12.965	12.965	3	4.4726E-266	2982	DP1141_18	219.06	170.85			1825800	543	450	516	934	1326;1327	1326		2	9606
HLEINPDHPIVETLR	Unmodified	1781.9424	0.94243213	97	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	3	0			1			17.934	17.934	3	0.0031662	10430	DP1141_18	139.77	102.78			38364000	544	97	517	935	1328	1328		1	9606
HLEINPDHSIIETLR	Unmodified	1785.9373	0.93734675	94	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1			18.634	18.634	3	3.8587E-05	11569	DP1141_18	140.31	112.22			9689100	545	94	518	936	1329	1329		0	9606
HLEMNPHFGSHR	Unmodified	1460.6732	0.67315033	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					14.943	14.943	3	0.0025549	5658	DP1141_16	135.1	110.6			15980000	546	288	519	937	1330	1330		0	9606
HLEPALAFQLELNR	Unmodified	1649.8889	0.88893999	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	2					20.435	20.435	2;3	9.6489E-05	14506	DP1141_16	88.163	43.727			89352000	547	302;39	520	938;939	1331;1332;1333	1332		3	9606
HLPPAALHLIAYYK	Unmodified	1605.9031	0.90313349	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	2	0		1				19.518	19.518	3	0.0081753	13225	DP1141_17	90.614	71.118			13068000	548	441	521	940	1334	1334		1	9606
HLPSTEPDPHVVR	Unmodified	1482.7579	0.75792582	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2.83	1.34	1	2	1	1	1	14.881	14.881	2;3	3.7044000000000002E-31	5617	DP1141_17	174.23	148.25			570500000	549	417	522	941;942;943;944;945;946	1335;1336;1337;1338;1339;1340;1341;1342;1343;1344;1345	1337		11	9606
HLQLAIR	Unmodified	849.51847	0.51847082	103;338;77;117;102	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;Q71UI9;P0C0S5;P16104;Q96QV6	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;H2AFV;H2AFZ;H2AFX;HIST1H2AA	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A.V;Histone H2A.Z;Histone H2AX;Histone H2A type 1-A	no	no	0	0	0	5	0					1	16.058	16.058	2	2.1099E-14	8536	DP1141_20	142.63	46.672			13877000000	550	77;103;338;102;117	523	947	1346	1346		1	9606
HLQLAIRNDEELNK	Unmodified	1691.8955	0.89548193	103;338;77;117	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13;P16104;Q96QV6	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3;H2AFX;HIST1H2AA	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2AX;Histone H2A type 1-A	no	no	0	0	1	5	0					3	23.173	23.173	2;3	8.632700000000001E-210	8581	DP1141_20	244.71	190.51			2927499999.9999995	551	77;103;338;117	524	948;949;950	1347;1348;1349;1350;1351;1352	1350		6	9606
HLQLAIRNDEELNKLLGK	Unmodified	2103.18	0.18003664	103;338	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	2	5	0					3	19.177	19.177	2;3;4	0.00015642	13140	DP1141_20	118.71	95.348			454840000	552	103;338	525	951;952;953	1353;1354;1355;1356	1353		3	9606
HMFHVAWVDPEDPYK	Oxidation (M)	1885.8458	0.84575455	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					18.835	18.835	2;3	0.0006502	11986	DP1141_16	133.98	119.18			248240000	553	302	526	954;955	1357;1358;1359	1357	269	3	9606
HMFHVAWVDPEDPYK	Unmodified	1869.8508	0.85083993	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.635	19.635	3	0.00096678	13170	DP1141_16	124.51	97.252			130080000	554	302	526	956	1360;1361;1362	1361		3	9606
HMFHVAWVDPEDPYKGYR	Oxidation (M)	2262.0317	0.03165784	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					18.635	18.635	3;4	2.2829999999999998E-174	11542	DP1141_16	230.69	210.93			290550000	555	302	527	957;958	1363;1364	1363	269	2	9606
HMFHVAWVDPEDPYKGYR	Unmodified	2246.0367	0.036743217	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.335	19.335	4	5.1258E-06	12622	DP1141_16	102.64	88.621			72921000	556	302	527	959	1365	1365		0	9606
HNFCFMEMNTR	2 Oxidation (M)	1517.585	0.58498853	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2.67	1.25	1		1	1		15.909	15.909	3	0.018518	7156	DP1141_18	70.728	59.683			208690000	557	405	528	960;961;962	1366;1367;1368	1367	365;366	1	9606
HNFCFMEMNTR	Oxidation (M)	1501.5901	0.59007391	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			17.299	17.299	3	0.027631	9479	DP1141_18	67.879	60.538			28182000	558	405	528	963	1369	1369	365;366	1	9606
HPAKPDPSGECNPDLR	Unmodified	1788.8213	0.82133071	336	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	3	0			1			13.846	13.846	3	0.0026953	4092	DP1141_18	104.94	94.396			10473000	559	336	529	964	1370	1370		1	9606
HPDVEVDGFSELR	Unmodified	1498.7052	0.70522155	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2.75	0.829		2	1	1		18.418	18.418	2;3	5.6208E-54	11466	DP1141_17	220.82	146.93			654360000	560	101	530	965;966;967;968	1371;1372;1373;1374;1375;1376	1372		5	9606
HPGSFDVVHVK	Unmodified	1220.6302	0.63020611	133	P22090;P62701	RPS4Y1;RPS4X	40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, X isoform	yes	no	0	0	0	4	0				1		15.487	15.487	3	1.9171E-14	6760	DP1141_19	127.51	96.945			20725000	561	133	531	969	1377	1377		1	9606
HPIKHQGLPQEVLNENLLR	Unmodified	2234.2284	0.22838381	16	CON__P02662			yes	yes	0	0	1	4	0				1		18.028	18.028	4	0.00072444	10835	DP1141_19	97.129	70.161		+	37324000	562	16	532	970	1378	1378		0	
HPQPGAVELAAK	Unmodified	1216.6564	0.65642086	143	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					14.744	14.744	2	6.6836E-30	5334	DP1141_16	169.58	62.003			29116000	563	143	533	971	1379	1379		1	9606
HPSLPLLELQEIMTSVAGR	Oxidation (M)	2106.1143	0.11432484	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.868	21.868	3	3.332E-09	16594	DP1141_16	140.89	103.54			9853300	564	39	534	972	1380;1381	1380	33	2	9606
HQGLPQEVLNENLLR	Unmodified	1758.9377	0.9376811	16	CON__P02662			yes	yes	0	0	0	4.5	0.5				1	1	19.329	19.329	3	2.7801E-06	13349	DP1141_20	135.91	102.16		+	110720000	565	16	535	973;974	1382;1383	1383		2	
HQHMHDRDDLYAEQMER	2 Oxidation (M)	2241.928	0.9279974	461	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	2	1	1	0	1					13.898	13.898	4	0.011485	4106	DP1141_16	62.104	47.849			16743000	566	461	536	975	1384	1384	422;423	1	9606
HRDFVAEPMGEKPVGSLAGIGEVLGK	Oxidation (M)	2708.3956	0.39558507	57	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	1	2	5	0					1	18.927	18.927	4	0.00017034	12743	DP1141_20	69.528	56.471			273730000	567	57	537	976	1385	1385	46	0	9606
HRPSEADEEELAR	Unmodified	1537.7121	0.71209784	40	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	1	1	0	1					14.169	14.169	3	1.121E-78	4464	DP1141_16	206.46	166.58			12333000	568	40	538	977	1386	1386		0	9606
HSGNITFDEIVNIAR	Unmodified	1684.8533	0.85328277	144	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					2	20.494	20.494	2;3	6.1009E-101	15210	DP1141_20	206.46	179.31			19029000	569	144	539	978;979	1387;1388	1387		1	9606
HSGPNSADSANDGFVR	Unmodified	1629.7132	0.71316047	196	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3	0			1			14.722	14.722	3	1.0988E-105	5379	DP1141_18	182.7	156.28			18834000	570	196	540	980	1389	1389		1	9606
HSSGIVADLSEQSLK	Unmodified	1569.7999	0.79985021	329	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		18.028	18.028	2	6.474300000000001E-33	10879	DP1141_19	175.48	113.7			19426000	571	329	541	981	1390;1391	1391		2	9606
HSSVYPTQEELEAVQNMVSHTER	Oxidation (M)	2686.2293	0.22930761	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	1	0	3	1		1		1		18.88	18.88	3	1.1982999999999998E-40	12222	DP1141_17	165.88	145.14			35221000	572	297	542	982;983	1392;1393;1394;1395	1392	260	4	9606
HTFSGVASVESSSGEAFHVGK	Unmodified	2118.997	0.99704647	24	CON__P12763			yes	yes	0	0	0	5	0					1	17.57	17.57	3	0.0059348	10572	DP1141_20	97.49	51.334		+	0	573	24	543	984	1396	1396		1	
HTGPNSPDTANDGFVR	Unmodified	1683.7601	0.76011066	147;205	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	4	0.816			2	2	2	15.278	15.278	2;3	0	6228	DP1141_18	295.62	263.86			993490000	574	147;205	544	985;986;987;988;989;990	1397;1398;1399;1400;1401;1402;1403;1404;1405	1399		9	9606
HTMMFSATFPK	2 Oxidation (M)	1328.5893	0.58932885	38	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	2	0	3	0			1			16.518	16.518	2	0.0062435	8016	DP1141_18	86.67	47.894			43361000	575	38	545	991	1406	1406	26;27	1	9606
HTPLVEFEEEESDKR	Unmodified	1843.8588	0.85882166	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.5	1.12	1	1	1	1		17.251	17.251	3	0	9238	DP1141_18	241.76	195.94			400550000	576	405	546	992;993;994;995	1407;1408;1409;1410;1411;1412;1413	1411		7	9606
HTPLVEFEEEESDKRESE	Unmodified	2188.976	0.97603626	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	2.71	1.39	2	1	2	1	1	17.462	17.462	2;3	0	9534	DP1141_16	276.1	221.74			1107000000	577	405	547	996;997;998;999;1000;1001;1002	1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428	1416		15	9606
HVDYVADQIVTK	Unmodified	1386.7143	0.71432967	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1.5	0.5	1	1				16.611	16.611	2	1.0542E-66	8332	DP1141_16	196.16	145.71			119550000	578	110	548	1003;1004	1429;1430;1431;1432	1429		4	9606
HVEVQVFGDHHGNAVYLFER	Unmodified	2352.14	0.13996274	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.75	1.3	1	1		2		19.057	19.057	3;4	0.00065772	12443	DP1141_19	91.889	66.001			124550000	579	405	549	1005;1006;1007;1008	1433;1434;1435;1436;1437;1438	1436		6	9606
HVINFDLPSDIEEYVHR	Unmodified	2082.0171	0.017053633	38	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	4	0				1		21.132	21.132	3	0.017881	15494	DP1141_19	74.786	58.796			10219000	580	38	550	1009	1439	1439		1	9606
HVLHVQLNRPNK	Unmodified	1453.8266	0.82661451	300	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	1	4	0				1		14.411	14.411	3	0.0099167	5098	DP1141_19	98.943	49.663			31756000	581	300	551	1010	1440	1440		1	9606
HVVFIAQR	Unmodified	968.55558	0.55558461	217	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	15.548	15.548	2	0.014381	7124	DP1141_20	97.596	67.093			25704000	582	217	552	1011	1441	1441		1	9606
HWPFMVVNDAGRPK	Oxidation (M)	1668.8195	0.81948022	108	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			17.833	17.833	3	0.012973	10262	DP1141_18	89.629	63.912			34246000	583	108	553	1012	1442;1443	1443	102	2	9606
HWPFMVVNDAGRPK	Unmodified	1652.8246	0.8245656	108	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			18.634	18.634	3	2.3696E-06	11547	DP1141_18	126.5	87.466			17119000	584	108	553	1013	1444	1444		0	9606
HWPFQVINDGDKPK	Unmodified	1679.842	0.8419898	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	1	3.6	0.8			3	1	1	18.237	18.237	2;3;4	2.4554999999999997E-21	10947	DP1141_18	186.81	143.21			490950000	585	105	554	1014;1015;1016;1017;1018	1445;1446;1447;1448;1449;1450;1451;1452	1448		8	9606
HYFIEVNSR	Unmodified	1163.5724	0.57235688	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		16.86	16.86	2	4.8392000000000005E-54	8908	DP1141_17	190.26	125.51			989780000	586	112	555	1019;1020;1021	1453;1454;1455;1456	1454		4	9606
IAAGEKIPLSQEEITLQGHAFEAR	Unmodified	2607.3657	0.36566515	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2	1	1		1			18.934	18.934	4	0.00051565	12128	DP1141_18	85.884	62.407			433030000	587	405	556	1022;1023	1457;1458	1458		2	9606
IAFTEWIEPPKR	Unmodified	1485.798	0.79799972	50	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	1	2	0		1				20.005	20.005	3	0.0015168	13913	DP1141_17	105.13	66.554			13286000	588	50	557	1024	1459	1459		1	9606
IALTDNALIAR	Unmodified	1169.6768	0.67682195	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		18.983	18.983	2	0	12333	DP1141_19	268.72	164.51			0	589	126	558	1025	1460	1460		1	9606
IANPVEGSTDR	Unmodified	1157.5677	0.56766543	326	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		15.19	15.19	2	0.0010807	6287	DP1141_19	117.01	75.985			36821000	590	326	559	1026	1461;1462	1462		2	9606
IAPPEAPVTGYMFGK	Oxidation (M)	1592.7909	0.79086543	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2	0		1				19.004	19.004	2	0.0047197	12295	DP1141_17	101.35	80.515			262980000	591	101	560	1027	1463	1463	86	1	9606
IAPPEAPVTGYMFGK	Unmodified	1576.796	0.79595081	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	3.67	1.25		1		1	1	20.115	20.115	2	0.0029565	13930	DP1141_17	112.94	89.214			342650000	592	101	560	1028;1029;1030	1464;1465;1466;1467	1464		4	9606
IAPYVAHNFSK	Unmodified	1245.6506	0.6506072	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	2	2				15.944	15.944	2;3	1.4585E-15	7119	DP1141_16	161.51	121.89			1442100000	593	112	561	1031;1032;1033;1034	1468;1469;1470;1471;1472;1473	1468		5	9606
IASSIVAQTAGIPTLPWSGSGLR	Unmodified	2281.243	0.24303082	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				22.222	22.222	2;3	3.1048E-127	17279	DP1141_17	209.6	172.24			356410000	594	302	562	1035;1036;1037	1474;1475;1476;1477;1478;1479	1478		6	9606
IATLASGLEVGK	Unmodified	1157.6656	0.66558856	115	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	0	1.5	0.5	1	1				18.405	18.405	2	0.003001	11378	DP1141_17	112.71	59.925			17911000	595	115	563	1038;1039	1480;1481	1481		2	9606
IAVAAQNCYK	Unmodified	1136.5648	0.56482866	207	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	15.127	15.127	2	0.0050433	6530	DP1141_20	111.82	76.371			17927000	596	207	564	1040	1482	1482		1	9606
ICCDLDVLASK	Unmodified	1292.6105	0.61045823	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.834	18.834	2	0.021843	11756	DP1141_18	148.91	103.55			8973100	597	82	565	1041	1483	1483		0	9606
ICGDIHGQYYDLLR	Unmodified	1721.8195	0.8195398	218;155	P62136;P36873	PPP1CA;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	4.67	0.471				1	2	19.156	19.156	2;3	0.00030728	13217	DP1141_20	115.57	79.615			478650000	598	218;155	566	1042;1043;1044	1484;1485;1486;1487	1487		4	9606
IDELQVVK	Unmodified	942.5386	0.53859714	63	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	2	0		1				17.106	17.106	2	3.0046E-05	9203	DP1141_17	138.24	40.64			6487200	599	63	567	1045	1488	1488		0	9606
IDIIPNPQER	Unmodified	1193.6404	0.64043645	97	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	3	0			1			18.382	18.382	2	0.027057	11107	DP1141_18	101.25	72.83			0	600	97	568	1046	1489	1489		1	9606
IDISPSTFR	Unmodified	1034.5397	0.53965977	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				18.605	18.605	2	0.0074504	11553	DP1141_17	100.02	48.671			10137000	601	457	569	1047	1490	1490		1	9606
IDISPSTLR	Unmodified	1000.5553	0.55530983	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	5	0					1	20.397	20.397	2	0.013701	15061	DP1141_20	107.59	16.608			0	602	435	570	1048	1491	1491		1	9606
IDSHHDNQSAVAELDR	Unmodified	1805.8293	0.82925286	307	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	3	0			1			15.113	15.113	3	0.031971	5969	DP1141_18	68.576	36.424			16607000	603	307	571	1049	1492	1492		0	9606
IDTIEIITDR	Unmodified	1187.6398	0.63976774	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	1			1		1	19.736	19.736	2	9.8249E-113	13962	DP1141_20	213.85	151.74			93781000	604	134	572	1050;1051	1493;1494;1495	1494		3	9606
IEDLSQQAQLAAAEK	Unmodified	1613.8261	0.82606496	34	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	4	0				1		17.828	17.828	2	8.2422E-44	10465	DP1141_19	182.37	108.74			18440000	605	34	573	1052	1496	1496		1	9606
IEDVTPIPSDSTR	Unmodified	1428.7096	0.70963822	223	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	17.26	17.26	2	0.003361	10056	DP1141_20	108.9	65.595			0	606	223	574	1053	1497	1497		1	9606
IEDVTPIPSDSTRR	Unmodified	1584.8107	0.81074925	223	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					2	16.243	16.243	2;3	2.8872E-84	8364	DP1141_20	194.12	114.14			136250000	607	223	575	1054;1055	1498;1499;1500;1501	1498		4	9606
IEEVPELPLVVEDKVEGYK	Unmodified	2184.1566	0.15656681	154	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			20.933	20.933	3	7.7136E-11	15045	DP1141_18	147.37	108.71			20359000	608	154	576	1056	1502	1502		1	9606
IEGFEVLK	Unmodified	933.51713	0.51713341	329	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	3	0			1			19.074	19.074	2	0.030136	12180	DP1141_18	98.458	0.98545			0	609	329	577	1057	1503	1503		1	9606
IEGLQNLVNLR	Unmodified	1267.7248	0.72483478	329	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		20.631	20.631	2	2.5509E-41	14803	DP1141_19	182.98	125.13			46948000	610	329	578	1058	1504	1504		1	9606
IEGVEHLPRR	Unmodified	1204.6677	0.66765425	395	Q92889	ERCC4	DNA repair endonuclease XPF	yes	yes	0	0	1	5	0					1	14.624	14.624	3	0.006628	5762	DP1141_20	78.934	3.4557			66396000	611	395	579	1059	1505	1505		1	9606
IEISELNR	Unmodified	972.52401	0.52400971	74;28	P04264;CON__P04264;CON__P35908v2;CON__P35908;P35908	KRT1;KRT2	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	3.5	1.5		1			1	17.297	17.297	2	4.0759E-81	10132	DP1141_20	200.12	56.27		+	681450000	612	74;28	580	1060;1061	1506;1507;1508;1509	1508		4	9606
IETIEVMEDR	Oxidation (M)	1249.586	0.58601761	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	4	0				1		16.604	16.604	2	8.2079E-08	8530	DP1141_19	138.98	75.41			875320000	613	193	581	1062	1510;1511	1510	187	2	9606
IETIEVMEDR	Unmodified	1233.5911	0.59110299	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		18.429	18.429	2	2.4396E-07	11448	DP1141_19	134.25	78.571			57717000	614	193	581	1063	1512	1512		1	9606
IEVIEIMTDR	Oxidation (M)	1233.6275	0.6274885	100	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		18.429	18.429	2	0.034074	11592	DP1141_19	89.247	29.129			408030000	615	100	582	1064	1513	1513	82	1	9606
IFAPNHVVAK	Unmodified	1094.6237	0.62366417	271	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	15.179	15.179	2	0.017772	6586	DP1141_20	93.195	35.636			65678000	616	271	583	1065	1514	1514		1	9606
IFCCHGGLSPDLQSMEQIR	Unmodified	2247.0235	0.023477694	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	4	0				1		19.63	19.63	3	0.027891	13372	DP1141_19	61.87	35.509			42673000	617	218;155	584	1066	1515	1515		1	9606
IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR	Oxidation (M)	3970.7666	0.76658412	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					19.935	19.935	4	6.1207E-13	13551	DP1141_16	81.386	70.571			44004000	618	302	585	1067	1516	1516	270	1	9606
IFGYPVGIVGNNGVLFSESAK	Unmodified	2167.1314	0.13135511	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.6	1.02	1	1	2	1		22.644	22.644	2;3	2.8298E-265	17588	DP1141_18	253.06	216.38			124610000	619	427	586	1068;1069;1070;1071;1072	1517;1518;1519;1520;1521;1522;1523;1524	1520		8	9606
IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK	Oxidation (M)	3782.8673	0.86728444	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2.5	0.5		2	2			18.024	18.024	3;4	5.8514E-09	10741	DP1141_17	59.743	40.365			235050000	620	101	587	1073;1074;1075;1076	1525;1526;1527;1528	1525	87	4	9606
IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK	Unmodified	3766.8724	0.87236982	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		2				18.634	18.634	3;4	2.8288E-14	11672	DP1141_17	84.596	70.58			70080000	621	101	587	1077;1078	1529;1530;1531;1532	1531		4	9606
IFVGGIKEDTEEYNLR	Unmodified	1881.9472	0.94724273	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		18.728	18.728	3	0.00020576	12002	DP1141_19	116.9	86.73			1145700000	622	193	588	1079	1533	1533		1	9606
IFVGGLSPDTPEEK	Unmodified	1487.7508	0.75077476	309	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		18.628	18.628	2	2.9885E-09	11852	DP1141_19	189.57	134.51			484980000	623	309	589	1080	1534;1535	1535		2	9606
IGEEEIQKPEEK	Unmodified	1427.7144	0.71438925	330	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	2	0		1				14.768	14.768	3	2.5382E-09	5459	DP1141_17	133.42	74.002			0	624	330	590	1081	1536	1536		1	9606
IGGIGTVPVGR	Unmodified	1024.6029	0.60292873	250	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.5	1.12	1	1	1	1		17.327	17.327	2	4.1788E-11	9468	DP1141_16	170.24	106.67			296080000	625	250	591	1082;1083;1084;1085	1537;1538;1539;1540	1537		3	9606
IGLAEEIR	Unmodified	899.50763	0.50763136	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.673	17.673	2	8.1849E-16	10122	DP1141_16	152.63	24.149			2816100000	626	302	592	1086;1087	1541;1542	1541		1	9606
IGPLGLSPK	Unmodified	880.5382	0.53820321	144	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.835	17.835	2	0.031425	11019	DP1141_20	93.195	43.754			108500000	627	144	593	1088	1543	1543		0	9606
IGQGYLIK	Unmodified	890.52255	0.52255314	162	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	0	1					17.339	17.339	2	0.013636	9356	DP1141_16	101.21	18.949			32665000	628	162	594	1089	1544	1544		1	9606
IGSFGPGEDLLYLR	Unmodified	1535.7984	0.79839365	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.934	21.934	2	4.3767E-31	16700	DP1141_16	164.33	116.73			22743000	629	39	595	1090	1545;1546;1547	1546		3	9606
IGSFGPQEDLLFLR	Unmodified	1590.8406	0.84059282	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			22.641	22.641	2	1.178E-118	17621	DP1141_16	222.18	196.84			1636399999.9999998	630	302	596	1091;1092;1093	1548;1549;1550;1551;1552;1553	1550		6	9606
IGVLDEGK	Unmodified	829.45453	0.45453316	177	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	16.266	16.266	2	0.00018916	8359	DP1141_20	124.59	30.588			123170000	631	177	597	1094	1554;1555	1554		2	9606
IHEGCEEPATHNALAK	Unmodified	1775.8261	0.82608174	266	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1.33	0.471	2	1				13.742	13.742	3;4	3.0280000000000002E-24	3799	DP1141_16	216.88	159.62			27332000	632	266	598	1095;1096;1097	1556;1557;1558;1559	1557		4	9606
IHFPLATYAPVISAEK	Unmodified	1755.956	0.95595693	251;413;252	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	2.86	0.99	1	1	3	2		20.426	20.426	2;3	4.4075E-10	13474	DP1141_18	148.78	93.063			892280000	633	251;252;413	599	1098;1099;1100;1101;1102;1103;1104	1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571;1572;1573;1574;1575;1576	1568		17	9606
IHNANPELTDGQIQAMLR	Oxidation (M)	2036.0109	0.010922397	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.54	17.54	3	0.002356	10002	DP1141_16	91.14	67.259			536700000	634	302	600	1105	1577	1577	271	1	9606
IHNANPELTDGQIQAMLR	Unmodified	2020.016	0.016007775	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	5	0					1	19.192	19.192	3	4.9103E-13	13238	DP1141_20	117.53	88.66			27749000	635	302	600	1106	1578	1578		0	9606
IHPELLAK	Unmodified	919.5491	0.54910224	437	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	0	4	0				1		15.591	15.591	2	0.013548	6925	DP1141_19	101.64	44.18			56731000	636	437	601	1107	1579	1579		1	9606
IIANALSSEPACLAEIEEDKAR	Unmodified	2399.2002	0.20023931	256	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					19.635	19.635	3	0.010631	13186	DP1141_16	72.383	51.64			12836000	637	256	602	1108	1580	1580		1	9606
IIDEVVNK	Unmodified	928.52295	0.52294707	67	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	5	0					1	15.548	15.548	2	0.00023302	7200	DP1141_20	124.37	39.109			87359000	638	67	603	1109	1581	1581		1	9606
IIDVVYNASNNELVR	Unmodified	1717.8999	0.89989861	219	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.567	19.567	2	1.5004E-15	13759	DP1141_20	158.4	109.32			164950000	639	219	604	1110	1582;1583	1582		2	9606
IIEEAPAPGIK	Unmodified	1136.6441	0.64412484	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.518	16.518	2	2.6562E-06	8286	DP1141_19	144.09	77.057			1654499999.9999998	640	405	605	1111;1112;1113;1114	1584;1585;1586;1587	1587		3	9606
IIEEAPATIATPAVFEHMEQCAVK	Oxidation (M)	2670.3033	0.30332417	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.335	19.335	3	0.00040306	12780	DP1141_16	98.376	80.125			134010000	641	302	606	1115	1588;1589	1588	272	2	9606
IIEEAPATIATPAVFEHMEQCAVK	Unmodified	2654.3084	0.30840955	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.834	20.834	3	3.4155E-31	14968	DP1141_16	155.16	133.88			286150000	642	302	606	1116	1590	1590		1	9606
IIEFVPTK	Unmodified	945.55352	0.55351892	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.34	18.34	2	2.0952E-15	11278	DP1141_16	149.4	74.683			1688399999.9999998	643	302	607	1117	1591;1592;1593	1591		3	9606
IILDLISESPIK	Unmodified	1339.7963	0.79626839	216	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			21.934	21.934	2	0.0051819	16482	DP1141_18	103.26	58.906			18456000	644	216	608	1118	1594	1594		1	9606
IINEPTAAAIAYGLDKK	Unmodified	1786.9829	0.98289996	108	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			1			19.134	19.134	3	0.0088402	12210	DP1141_18	88.133	57.566			233490000	645	108	609	1119	1595	1595		0	9606
IINEPTAAAIAYGLDR	Unmodified	1686.8941	0.89408495	105;121	P0DMV8;P0DMV9;P17066	HSPA1A;HSPA1B;HSPA6	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6	no	no	0	0	0	3	0			2			20.533	20.533	2;3	9.1376E-167	14363	DP1141_18	279.75	212.83			1882099999.9999998	646	105;121	610	1120;1121	1596;1597	1596		1	9606
IIQLLDDYPK	Unmodified	1216.6703	0.67033959	85	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		20.03	20.03	2	0.0014627	13849	DP1141_19	134.25	38.716			167670000	647	85	611	1122	1598	1598		0	9606
IIQQAGQVWFPDSAFK	Unmodified	1833.9414	0.94136949	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.22	2	1		1		21.339	21.339	2;3	2.8175E-105	15658	DP1141_16	256.31	218.7			300800000	648	302	612	1123;1124;1125;1126	1599;1600;1601;1602;1603;1604;1605;1606;1607;1608	1600		10	9606
IISNVPADSLIR	Unmodified	1296.7402	0.74015049	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	2	0		1				18.703	18.703	2	3.4397E-30	11835	DP1141_17	172.98	109.56			15753000	649	441	613	1127	1609	1609		1	9606
IITHPNFNGNTLDNDIMLIK	Unmodified	2282.1729	0.17290235	13	CON__P00761			yes	yes	0	0	0	2.33	1.25	1	1		1		20.634	20.634	3	0.0063406	14649	DP1141_16	59.983	32.283		+	137360000	650	13	614	1128;1129;1130	1610;1611;1612	1610		3	
IITHPNFNGNTLDNDIMLIK	Oxidation (M)	2298.1678	0.16781697	13	CON__P00761			yes	yes	0	1	0	2	0		1				20.105	20.105	3	0.00068692	13926	DP1141_17	107.72	64.515		+	35617000	651	13	614	1131	1613;1614;1615	1613	5	3	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Unmodified	3308.7187	0.71871013	13	CON__P00761			yes	yes	0	0	1	5	0					1	21.496	21.496	4	3.7841E-05	16627	DP1141_20	55.587	40.258		+	12306000	652	13	615	1132	1616	1616		1	
IKFEMEQNLR	Oxidation (M)	1322.6653	0.66527099	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2	0.816	1	1	1			15.935	15.935	3	0.0070928	7255	DP1141_16	106.88	53.791		+	1418600000	653	27	616	1133;1134;1135	1617;1618;1619	1617	17	2	9606
IKFEMEQNLR	Unmodified	1306.6704	0.67035637	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	2	0		1				17.606	17.606	3	0.00050161	10087	DP1141_17	132.88	72.708		+	60478000	654	27	616	1136	1620	1620		0	9606
IKYPENFFLLR	Unmodified	1438.7973	0.79727144	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	3.17	1.34	1	1	1	2	1	20.724	20.724	2;3	2.0776E-66	14743	DP1141_18	177.44	160.3			1062599999.9999999	655	218;155	617	1137;1138;1139;1140;1141;1142	1621;1622;1623;1624;1625;1626;1627;1628	1623		8	9606
ILEMNDKYVK	Oxidation (M)	1267.6482	0.64822394	310	Q14149	MORC3	MORC family CW-type zinc finger protein 3	yes	yes	0	1	1	3	0			1			14.886	14.886	3	0.030627	5577	DP1141_18	70.908	7.6923			0	656	310	618	1143	1629	1629	304	1	9606
ILEPGLNILIPVLDR	Unmodified	1674.008	0.0079924964	442	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				1		23.983	23.983	2	0.0016238	19815	DP1141_19	107.97	81.293			5092700	657	442	619	1144	1630;1631	1630		2	9606
ILFRPVASQLPR	Unmodified	1395.8351	0.83505393	151	P35232	PHB	Prohibitin	yes	yes	0	0	1	4	0				1		18.429	18.429	3	0.019446	11497	DP1141_19	96.756	61.982			85359000	658	151	620	1145	1632	1632		0	9606
ILGADTSVDLEETGR	Unmodified	1574.7788	0.77878042	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.724	18.724	2	2.0306E-05	11644	DP1141_18	134.49	75.86			0	659	139	621	1146	1633	1633		1	9606
ILITTVPPNLR	Unmodified	1235.7602	0.76015765	296	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				2		19.679	19.679	2	0.02092	12865	DP1141_19	93.162	50.972			224980000	660	296	622	1147;1148	1634;1635	1634		1	9606
ILLAELEQLK	Unmodified	1168.7067	0.7067251	98	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			21.234	21.234	2	0.007887	15556	DP1141_18	106.6	58.73			27574000	661	98	623	1149	1636	1636		1	9606
ILLAELEQLKGQGK	Unmodified	1538.9032	0.90319307	98	P08670	VIM	Vimentin	yes	yes	0	0	1	3	0			1			19.534	19.534	3	1.5756E-06	12870	DP1141_18	121.68	65.593			74109000	662	98	624	1150	1637	1637		0	9606
ILMTYSVQDHMETR	Oxidation (M)	1738.8018	0.80184082	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	1	0	2	0		1				16.873	16.873	3	0.013748	8952	DP1141_17	67.095	36.528			14172000	663	441	625	1151	1638	1638	406;407	1	9606
ILMTYSVQDHMETR	2 Oxidation (M)	1754.7968	0.79675545	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	2	0	2	0		1				15.857	15.857	3	0.0079733	7133	DP1141_17	82.202	57.977			18825000	664	441	625	1152	1639	1639	406;407	0	9606
ILNVPQELYEK	Unmodified	1344.7289	0.7289171	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.319	19.319	2	1.5657999999999999E-80	12698	DP1141_16	202.44	153.02			944250000	665	302	626	1153;1154	1640;1641;1642;1643	1641		4	9606
ILPTLEAVAALGNK	Unmodified	1408.829	0.8289655	296	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		21.332	21.332	2	7.9151E-22	15940	DP1141_19	188.91	138.88			88155000	666	296	627	1155	1644;1645	1644		2	9606
ILSGVVTK	Unmodified	815.51165	0.5116541	227	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	15.685	15.685	2	0.013315	7508	DP1141_20	102.77	22.834			127710000	667	227	628	1156	1646;1647	1646		2	9606
ILSTMDSPST	Oxidation (M)	1066.4852	0.48524094	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					16.028	16.028	2	0.029383	7372	DP1141_16	91.9	43.144			293200000	668	302	629	1157	1648	1648	273	1	9606
ILTFDQLALDSPK	Unmodified	1459.7922	0.79224564	283	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	21.209	21.209	2	2.6188E-05	16286	DP1141_20	144.55	97.322			78343000	669	283	630	1158	1649;1650	1649		2	9606
IMATPEQVGK	Oxidation (M)	1088.5536	0.55359527	114	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	1	0	3	0			1			14.522	14.522	2	0.01469	4994	DP1141_18	104.44	66.161			10054000	670	114	631	1159	1651	1651	130	0	9606
IMDQAITVGAPVIGLNDSGGAR	Oxidation (M)	2170.1052	0.10521671	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.834	19.834	2	0.0030974	13516	DP1141_18	105.39	69.58			22145000	671	82	632	1160	1652	1652	64	1	9606
IMIMTDQDQDGSHIK	2 Oxidation (M)	1762.7866	0.78658469	110;273	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	2	0	2	0		1				15.354	15.354	3	0.024952	6513	DP1141_17	51.643	22.631			81760000	672	110;273	633	1161	1653;1654	1654	109;110	2	9606
IMIMTDQDQDGSHIK	Oxidation (M)	1746.7917	0.79167007	110;273	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	1	0	2	0		1				15.757	15.757	3	9.034E-08	7075	DP1141_17	120.29	91.854			10686000	673	110;273	633	1162	1655	1655	109;110	0	9606
IMLPWDPTGK	Oxidation (M)	1172.59	0.58998078	135	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		20.731	20.731	2	4.8806E-07	14996	DP1141_19	126.24	51.942			22138000	674	135	634	1163	1656;1657	1656	143	2	9606
IMLPWDPTGK	Unmodified	1156.5951	0.59506616	135	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		21.533	21.533	2	0.0027569	16146	DP1141_19	114.89	61.958			12435000	675	135	634	1164	1658	1658		1	9606
IMNTFSVMPSPK	Oxidation (M)	1366.6625	0.6624938	308	Q13885;Q9BVA1;Q9BUF5	TUBB2A;TUBB2B;TUBB6	Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	yes	no	0	1	0	3	0			2			18.234	18.234	2	0.0060951	10188	DP1141_18	110.39	69.798			26271000	676	308	635	1165;1166	1659;1660	1659	302;303	1	9606
IMNTFSVVPSPK	Oxidation (M)	1334.6904	0.69042311	93;253	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	1	0	2.67	1.25	1		1	1		18.101	18.101	2	1.5186E-14	10894	DP1141_19	160.53	83.243			369420000	677	93;253	636	1167;1168;1169	1661;1662;1663;1664;1665	1664	70	5	9606
IMNTFSVVPSPK	Unmodified	1318.6955	0.69550848	93;253	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	3.5	0.5			1	1		19.031	19.031	2	2.3477000000000002E-54	12154	DP1141_18	190.96	93.164			198690000	678	93;253	636	1170;1171	1666;1667;1668;1669;1670	1668		4	9606
INEEISVK	Unmodified	930.50221	0.50221163	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2.5	0.5		1	1			15.638	15.638	2	7.9892E-12	6686	DP1141_18	139.88	65.463			503590000	679	417	637	1172;1173	1671;1672	1672		2	9606
INISEGNCPER	Unmodified	1287.5877	0.58774895	326	Q15366	PCBP2	Poly(rC)-binding protein 2	no	no	0	0	0	4	0				1		15.487	15.487	2	0.032481	6898	DP1141_19	86.624	61.487			78123000	680	326	638	1174	1673	1673		1	9606
INTQWLLTSGTTEANAWK	Unmodified	2033.0218	0.02180466	33	CON__Streptavidin			yes	yes	0	0	0	4.89	0.314				1	8	28.922	28.922	2;3	6.4778E-176	17253	DP1141_20	234.87	182.37		+	13163000000	681	33	639	1175;1176;1177;1178;1179;1180;1181;1182;1183	1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689	1677		16	
IPCESPPLEVVDTTASTKR	Unmodified	2099.0569	0.056869537	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				18.005	18.005	3	0.0052349	10548	DP1141_17	76.586	53.024			6004900	682	173	640	1184	1690	1690		1	9606
IPIHNEDITYDELVLMMQR	2 Oxidation (M)	2361.1345	0.13446793	390	Q92734	TFG	Protein TFG	yes	yes	0	2	0	4	1			1		1	19.646	19.646	3	3.0675E-14	13960	DP1141_20	150.9	108.75			204550000	683	390	641	1185;1186	1691;1692;1693;1694	1693	352;353	4	9606
IPIHNEDITYDELVLMMQR	Oxidation (M)	2345.1396	0.13955331	390	Q92734	TFG	Protein TFG	yes	yes	0	1	0	3.5	0.5			1	1		20.773	20.773	3	8.133E-10	14601	DP1141_18	145.82	118.6			55298000	684	390	641	1187;1188	1695;1696;1697	1695	352;353	3	9606
IPLSQEEITLQGHAFEAR	Unmodified	2038.0484	0.048353761	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			25.069	25.069	3	0	12604	DP1141_17	268.12	204.66			503580000	685	405	642	1189;1190;1191	1698;1699;1700;1701;1702	1701		5	9606
IPNFDVR	Unmodified	859.4552	0.45520186	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	0		1				17.905	17.905	2	3.6436E-08	10506	DP1141_17	133.47	41.278			59951000	686	110	643	1192	1703	1703		0	9606
IPVGPETLGR	Unmodified	1037.5869	0.58694431	88	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	5	0					1	17.321	17.321	2	0.024964	10199	DP1141_20	88.37	46.717			17258000	687	88	644	1193	1704	1704		1	9606
IPVQAVWAGWGHASENPK	Unmodified	1945.9799	0.97988027	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2	1.41	2			1		19.719	19.719	2;3	2.9923E-63	13311	DP1141_16	185.86	162.42			549160000	688	302;39	645	1194;1195;1196	1705;1706;1707	1705		2	9606
IPWFQYPIIYDIR	Unmodified	1722.9134	0.91336383	407	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		24.208	24.208	2	1.3049E-41	20128	DP1141_19	196.44	150.09			16233000	689	407	646	1197	1708	1708		1	9606
IQDKEGIPPDQQR	Unmodified	1522.774	0.77396981	104	P62987;P62979;P0CG47;P0CG48;A0A2R8Y422	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	2.78	1.47	2	3	1	1	2	14.206	14.206	2;3	8.6166E-53	4445	DP1141_20	184.98	75.315			351480000	690	104	647	1198;1199;1200;1201;1202;1203;1204;1205;1206	1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726	1725		18	9606
IQDWYDKK	Unmodified	1094.5397	0.53965977	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1.5	0.5	1	1				15.794	15.794	2	0.0086308	7006	DP1141_16	107.9	45.18		+	199520000	691	27	648	1207;1208	1727;1728	1727		2	9606
IQEAGTEVVK	Unmodified	1072.5764	0.57643921	164	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	2	0		1				14.655	14.655	2	0.010678	5413	DP1141_17	101.64	30.264			4149900	692	164	649	1209	1729	1729		1	9606
IQHQDWTGGKEFK	Unmodified	1572.7685	0.76849051	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	1	3	0			1			15.565	15.565	3	0.0099275	6620	DP1141_18	96.866	62.097		+	14168000	693	11;10	650	1210	1730	1730		0	
IRLENEIQTYR	Unmodified	1433.7627	0.76267685	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	0.816		1	1	1		17.417	17.417	3	1.5548E-09	9557	DP1141_18	116.84	73.861		+	162890000	694	25	651	1211;1212;1213	1731;1732;1733	1732		2	9606
ISEQFTAMFR	Oxidation (M)	1244.586	0.58595803	93;253;308	P07437;P68371;P04350;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	4	1			1		1	18.603	18.603	2	7.2336E-11	12185	DP1141_20	148.94	70.795			424040000	695	93;253;308	652	1214;1215	1734;1735	1735	71	2	9606
ISGLIYEETR	Unmodified	1179.6136	0.61355299	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	4.8	0.6			1		9	28.258	28.258	1;2	3.8715999999999996E-113	10844	DP1141_18	205.12	139.65			23465000000	696	234	653	1216;1217;1218;1219;1220;1221;1222;1223;1224;1225	1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749	1736		12	9606
ISGLIYEETRGVLK	Unmodified	1576.8825	0.88245763	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.163	19.163	2	0.0017883	13214	DP1141_20	130.56	63.642			37844000	697	234	654	1226	1750	1750		1	9606
ISHSLYSGIEGLDESPSR	Unmodified	1945.9381	0.93813461	383	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				18.605	18.605	3	0.01715	11670	DP1141_17	75.91	53.583			5906100	698	383	655	1227	1751	1751		0	9606
ISLGLPVGAVINCADNTGAK	Unmodified	1969.0303	0.030260856	235	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	21.109	21.109	2	0.0089484	16160	DP1141_20	83.292	52.434			50490000	699	235	656	1228	1752	1752		1	9606
ISLLLDPGSFVESDMFVEHR	Oxidation (M)	2306.1253	0.12528345	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			22.375	22.375	3	3.7541E-05	17207	DP1141_16	113.05	65.148			22683000	700	82	657	1229;1230	1753;1754;1755;1756	1753	65	4	9606
ISLPLPNFSSLNLR	Unmodified	1569.8879	0.88787736	98	P08670	VIM	Vimentin	yes	yes	0	0	0	3.5	0.5			1	1		22.833	22.833	2	3.8708E-69	17840	DP1141_18	205.13	151.07			11993000	701	98	658	1231;1232	1757;1758;1759;1760;1761	1758		5	9606
ISQRYQKFALPQYLK	Unmodified	1882.0465	0.046503268	17	CON__P02663			yes	yes	0	0	2	4	0				1		18.329	18.329	3	0.031549	11221	DP1141_19	68.413	48.659		+	68658000	702	17	659	1233	1762	1762		0	
ISSLLEEQFQQGK	Unmodified	1505.7726	0.77257283	219	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.163	19.163	2	0.0030502	13193	DP1141_20	146.11	104.42			99347000	703	219	660	1234	1763	1763		1	9606
ISTLTIEEGNLDIQRPK	Unmodified	1926.0422	0.042205751	299	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		18.728	18.728	3	3.0395E-11	11880	DP1141_19	162.64	109.25			76127000	704	299	661	1235	1764	1764		1	9606
ISVMGGEQAANVLATITK	Unmodified	1801.9608	0.96078431	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			21.734	21.734	2	0	16210	DP1141_18	290.1	207.84			251220000	705	427	662	1236;1237	1765;1766;1767	1766		2	9606
ISVMGGEQAANVLATITK	Oxidation (M)	1817.9557	0.95569893	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			20.719	20.719	2	1.036E-83	14859	DP1141_17	204.23	138.39			959790000	706	427	662	1238;1239	1768;1769	1768	393	1	9606
ISVYYNEATGGK	Unmodified	1300.6299	0.62993134	93	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	4	0				1		17.034	17.034	2	6.568E-81	9244	DP1141_19	200.56	156.93			250160000	707	93	663	1240	1770;1771	1770		2	9606
ITDIIGKEEGIGPENLR	Unmodified	1852.9894	0.9894419	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.6	0.49	2	3				18.657	18.657	2;3	0	11667	DP1141_16	310.9	252.27			1280600000	708	302	664	1241;1242;1243;1244;1245	1772;1773;1774;1775;1776;1777;1778;1779;1780	1777		9	9606
ITGEAFVQFASQELAEK	Unmodified	1866.9363	0.9363437	196	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0.816			1	1	1	22.571	22.571	2	8.2784E-192	17519	DP1141_18	237.41	176.72			54247000	709	196	665	1246;1247;1248	1781;1782;1783	1781		3	9606
ITISPLQELTLYNPER	Unmodified	1886.0149	0.014928368	36	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			22.427	22.427	2	1.4339E-06	17292	DP1141_18	135.79	98.19			4206200	710	36	666	1249	1784	1784		0	9606
ITPENLPQILLQLK	Unmodified	1618.9658	0.96579333	170	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				23.295	23.295	2	0.00017148	18773	DP1141_17	133.75	97.068			6567200	711	170	667	1250	1785;1786	1785		2	9606
ITSENPDEGFKPSSGTVQELNFR	Unmodified	2551.2191	0.2190605	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	2	0		1				18.803	18.803	3	8.8484E-06	12025	DP1141_17	114.46	73.662			121100000	712	302;39	668	1251	1787	1787		1	9606
IVATKPLYVALAQR	Unmodified	1541.9293	0.92934824	113	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	3	0			2			18.434	18.434	2;3	5.7211E-06	11270	DP1141_18	157.24	128.85			127500000	713	113	669	1252;1253	1788;1789	1789		1	9606
IVEANPLLEAFGNAK	Unmodified	1584.8512	0.8511575	448	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	1	0	1					21.734	21.734	2	0.00010409	16248	DP1141_16	112.43	71.266			17238000	714	448	670	1254	1790	1790		0	9606
IVEPYIAWGYPNLK	Unmodified	1661.8817	0.88172935	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		21.834	21.834	2	0.0037776	16541	DP1141_19	130.94	31.372			93279000	715	126	671	1255	1791;1792	1791		2	9606
IVGDLAQFMVQNGLSR	Unmodified	1746.9087	0.90868916	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		22.26	22.26	2	2.0924999999999998E-217	17013	DP1141_18	306.44	229.15			76161000	716	112	672	1256;1257;1258	1793;1794;1795;1796	1794		4	9606
IVGLQYK	Unmodified	819.48544	0.48543935	110;273	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	1.5	0.5	1	1				16.873	16.873	2	0.034809	8751	DP1141_16	120.76	44.721			174150000	717	110;273	673	1259;1260	1797;1798	1797		2	9606
IVGPSGAAVPCK	Unmodified	1154.6118	0.61177885	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				15.658	15.658	2	0.03085	6867	DP1141_17	86.136	40.8			18755000	718	131	674	1261	1799	1799		1	9606
IVKPNGEKPDEFESGISQALLELEMNSDLK	Oxidation (M)	3345.665	0.6650028	217	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	1	2	5	0					1	22.507	22.507	4	4.6339E-05	18239	DP1141_20	55.049	30.651			8773700	719	217	675	1262	1800	1800	207	1	9606
IVQAEGEAEAAK	Unmodified	1214.6143	0.61428128	407	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		14.19	14.19	2	6.018E-53	4783	DP1141_19	185.61	122.07			46826000	720	407	676	1263	1801;1802;1803	1801		3	9606
IVVNLTGR	Unmodified	870.5287	0.52870115	220	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	17.288	17.288	2	2.6073000000000003E-25	10120	DP1141_20	162.31	76.946			329270000	721	220	677	1264	1804;1805	1804		2	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Oxidation (M)	2640.3006	0.30062206	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	1.5	0.5	1	1				20.08	20.08	3	3.6013E-24	13828	DP1141_16	149.41	123.46			152940000	722	405	678	1265;1266	1806;1807;1808;1809;1810	1806	367	5	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Unmodified	2624.3057	0.30570743	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			21.09	21.09	3	6.3938000000000004E-24	15137	DP1141_18	150.48	128.12			130500000	723	405	678	1267;1268;1269	1811;1812;1813;1814;1815;1816	1815		6	9606
IYGFYDECK	Unmodified	1193.5063	0.50631073	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	4	0				1		18.728	18.728	2	2.2489E-16	11870	DP1141_19	157.58	125.26			379150000	724	218;155	679	1270	1817	1817		1	9606
IYGFYDECKR	Unmodified	1349.6074	0.60742176	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	4	0				1		17.428	17.428	3	0.0020002	9818	DP1141_19	131.62	95.964			96337000	725	218;155	680	1271	1818	1818		1	9606
KAEAGAGSATEFQFR	Unmodified	1568.7583	0.75831975	179	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	1	5	0					1	16.798	16.798	3	0.00025971	9259	DP1141_20	100.4	47.364			18104000	726	179	681	1272	1819	1819		0	9606
KAEGEPQEESPLK	Unmodified	1440.7096	0.70963822	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	1.5	0.5	2	2				14.268	14.268	2;3	4.0433E-234	4785	DP1141_17	281.17	200.25			40709000	727	435	682	1273;1274;1275;1276	1820;1821;1822;1823;1824;1825;1826;1827	1826		8	9606
KAEVEGKDLPEHAVLK	Unmodified	1761.9625	0.96249887	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	1	0	1					14.943	14.943	3	0.0034863	5638	DP1141_16	137.73	101.83			10706000	728	267	683	1277	1828	1828		1	9606
KAEVNTIPGFDGVVK	Unmodified	1572.8512	0.8511575	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.131	18.131	2	0.001821	10716	DP1141_18	105.25	63.041			0	729	81	684	1278	1829	1829		1	9606
KAGNFYVPAEPK	Unmodified	1319.6874	0.68738664	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		16.27	16.27	2	0.021528	7985	DP1141_19	104.82	56.733			32106000	730	126	685	1279	1830	1830		1	9606
KAIIIFVPVPQLK	Unmodified	1464.9432	0.9432074	217	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					1	20.708	20.708	2	0.00041527	15412	DP1141_20	114.4	101.28			5536200	731	217	686	1280	1831	1831		1	9606
KAIVICPTDEDLKDR	Unmodified	1771.9138	0.91383411	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	2	2	0.816	1	1	1			16.22	16.22	3	0	7614	DP1141_18	272.09	226.88			227070000	732	417	687	1281;1282;1283	1832;1833;1834;1835	1835		4	9606
KALAAAGYDVEK	Unmodified	1234.6558	0.65575216	118	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	1	4	0				2		15.089	15.089	2;3	0.0010086	6213	DP1141_19	128.85	64.135			976580000	733	118	688	1284;1285	1836;1837	1836		1	9606
KALAAAGYDVEKNNSR	Unmodified	1705.8747	0.87474649	118	P16403;P10412;P16402;P22492;Q02539	HIST1H1C;HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A	Histone H1.2;Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1	yes	no	0	0	2	4	0				1		14.5	14.5	3	4.832499999999999E-218	5235	DP1141_19	249.36	215.31			67704000	734	118	689	1286	1838	1838		1	9606
KASGPPVSELITK	Unmodified	1325.7555	0.7554662	118	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	1	4	0				2		16.47	16.47	2;3	1.0932E-67	8018	DP1141_19	196.02	147.46			3537599999.9999995	735	118	690	1287;1288	1839;1840;1841;1842;1843;1844;1845;1846;1847	1841		9	9606
KAVVVCPKDEDYK	Unmodified	1549.781	0.78102903	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	1	0	1					14.169	14.169	3	0.013848	4500	DP1141_16	174.21	143.9			19784000	736	267	691	1289	1848	1848		1	9606
KAYVEANQMLGDLIK	Oxidation (M)	1707.8866	0.88655673	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	1.67	0.471	1	2				18.283	18.283	2;3	0.0026203	11085	DP1141_17	93.237	42.103			147700000	737	112	692	1290;1291;1292	1849;1850;1851;1852;1853	1850	114	5	9606
KDEDLFREWLK	Unmodified	1477.7565	0.75652884	57	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	2	5	0					1	19.832	19.832	3	0.012336	14265	DP1141_20	100.82	46.047			101610000	738	57	693	1293	1854	1854		0	9606
KDWYDVK	Unmodified	952.46543	0.46543219	211	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		16.704	16.704	2	1.3076E-08	8598	DP1141_19	153.04	90.377			23692000	739	211	694	1294	1855	1855		0	9606
KESYSIYVYK	Unmodified	1278.6496	0.64960415	136	Q16778;P33778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	5	0					3	26.874	26.874	2;3	5.2175E-31	9674	DP1141_20	161.67	129.25			490480000	740	136	695	1295;1296;1297	1856;1857;1858	1856		3	9606
KESYSVYVYK	Unmodified	1264.634	0.63395408	206	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	1	5	0					2	26.569	26.569	2	4.0413E-67	8599	DP1141_20	197.79	137.67			15660000000	741	206	696	1298;1299	1859;1860;1861;1862;1863	1859		5	9606
KEVKEELSAVER	Unmodified	1415.762	0.76200815	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				14.843	14.843	3	2.8444E-97	5580	DP1141_17	202.29	153.11			0	742	173	697	1300	1864	1864		1	9606
KFEEEGNPYYSSAR	Unmodified	1675.7478	0.74781464	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	1.67	0.943	2		1			16.125	16.125	2;3	8.7239E-300	7405	DP1141_16	327.06	284.72			2033199999.9999998	743	427	698	1301;1302;1303	1865;1866;1867;1868;1869	1867		5	9606
KFYPLEIDYGQDEEAVK	Unmodified	2042.9837	0.98368782	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		2				19.705	19.705	2;3	0.00020407	13411	DP1141_17	134.02	69.49			153890000	744	101	699	1304;1305	1870;1871	1871		2	9606
KFYPLEIDYGQDEEAVKK	Unmodified	2171.0787	0.078650837	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2.25	0.433		3	1			18.615	18.615	2;3;4	0	11810	DP1141_17	276.62	236.53			335760000	745	101	700	1306;1307;1308;1309	1872;1873;1874;1875;1876;1877	1872		6	9606
KGDEVDGVDEVAK	Unmodified	1359.6518	0.65178899	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		2				14.807	14.807	2;3	0.000636	5737	DP1141_17	122.1	94.615			62158000	746	101	701	1310;1311	1878;1879	1879		2	9606
KGDEVDGVDEVAKK	Unmodified	1487.7468	0.74675201	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2.5	0.5		1	1			14.071	14.071	3	1.31E-185	4508	DP1141_17	230.57	180.09			11407000	747	101	702	1312;1313	1880;1881	1880		1	9606
KGEKDIPGLTDTTVPR	Unmodified	1725.9261	0.92611336	233	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	2	4	0				1		16.47	16.47	3	2.9686E-05	8302	DP1141_19	104.21	68.013			29712000	748	233	703	1314	1882	1882		0	9606
KGHAVGDIPGVR	Unmodified	1204.6677	0.66765425	224	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	1	3	2	1				1	14.684	14.684	3	0.001054	5198	DP1141_16	97.779	18.845			85577000	749	224	704	1315;1316	1883;1884;1885	1883		3	9606
KGTHFVQLCCQR	Unmodified	1532.734	0.73403603	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.67	1.25	1		1	1		15.11	15.11	3	1.4885E-12	5849	DP1141_16	167.2	127.47			756440000	750	427	705	1317;1318;1319	1886;1887;1888;1889	1886		3	9606
KGVAINMVTEEDKR	Oxidation (M)	1604.8192	0.81920545	210	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	2	1	0	1					14.352	14.352	3	0.0077788	4707	DP1141_16	99.834	59.887			3444900	751	210	706	1320	1890	1890	202	0	9606
KHDLHKMAEANR	Oxidation (M)	1464.7256	0.72557983	456	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	1	2	1	0	1					22.221	22.221	2	0.011643	17003	DP1141_16	101.9	38.821			33836000	752	456	707	1321	1891	1891	420	1	9606
KIAPYVAHNFSK	Unmodified	1373.7456	0.74557022	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	1.5	0.5	2	2				15.302	15.302	2;3	3.4967E-06	6379	DP1141_17	166.11	135.77			163090000	753	112	708	1322;1323;1324;1325	1892;1893;1894;1895;1896	1895		5	9606
KIDKYTEVLK	Unmodified	1235.7125	0.71253876	163	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	2	5	0					1	15.293	15.293	3	0.0083113	6887	DP1141_20	117.02	68.931			45743000	754	163	709	1326	1897;1898	1898		2	9606
KIFVGGIKEDTEEYNLR	Unmodified	2010.0422	0.042205751	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	4	0				1		17.863	17.863	3	0.0051536	10540	DP1141_19	127.07	101.25			136010000	755	193	710	1327	1899	1899		1	9606
KIGEEEIQKPEEK	Unmodified	1555.8094	0.80935227	330	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	2	2.5	0.5		1	1			14.087	14.087	3	1.9286E-40	4516	DP1141_17	182.72	92.977			36499000	756	330	711	1328;1329	1900;1901	1900		1	9606
KIHNANPELTDGQIQAMLR	Oxidation (M)	2164.1059	0.10588542	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					16.861	16.861	3;4	0.016788	8583	DP1141_16	69.289	50.217			121640000	757	302	712	1330;1331	1902;1903;1904	1902	271	3	9606
KIHPQTIIAGWR	Unmodified	1418.8147	0.81465284	255	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	3	0			1			17.633	17.633	3	2.8277E-05	9943	DP1141_18	117.79	98.115			20785000	758	255	713	1332	1905	1905		0	9606
KILDSVGIEADDDRLNK	Unmodified	1899.9902	0.99017018	84	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	2	5	0					1	17.288	17.288	3	0.015111	10171	DP1141_20	98.408	69.331			45355000	759	84	714	1333	1906	1906		1	9606
KKPLDGEYFTLQIR	Unmodified	1706.9356	0.93555583	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	2	3.5	0.5			1	1		18.731	18.731	3	0	11715	DP1141_18	273.07	233.1			262640000	760	76	715	1334;1335	1907;1908	1907		1	9606
KLAAAEGLEPK	Unmodified	1125.6394	0.63937381	167	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	1	4	0				1		15.089	15.089	2	1.0161E-96	6138	DP1141_19	211.86	105.18			79155000	761	167	716	1336	1909;1910	1910		2	9606
KLAVNMVPFPR	Oxidation (M)	1286.7169	0.71691263	93;253;308	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	1	1	3.33	0.471			2	1		17.531	17.531	2;3	5.976E-05	9984	DP1141_19	121.5	86.007			329510000	762	93;253;308	717	1337;1338;1339	1911;1912;1913;1914;1915	1914	72	4	9606
KLAVNMVPFPR	Unmodified	1270.722	0.72199801	93;253;308	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	1	3	0			1			18.734	18.734	2	0.00034615	11709	DP1141_18	117.81	61.001			8188600	763	93;253;308	717	1340	1916	1916		1	9606
KLDAEDVIGSR	Unmodified	1201.6303	0.63026569	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.746	16.746	2	0.00012196	8660	DP1141_17	121.61	68.671			6861200	764	173	718	1341	1917	1917		0	9606
KLDPELHLDIK	Unmodified	1319.7449	0.74490152	296	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	4	0				1		17.528	17.528	3	0.011565	10018	DP1141_19	144.28	85.017			98109000	765	296	719	1342	1918	1918		0	9606
KLFIGGLSFETTDDSLR	Unmodified	1897.9785	0.97854286	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		20.731	20.731	3	3.2565E-11	15110	DP1141_19	125.41	84.019			15431000	766	193	720	1343	1919	1919		1	9606
KLFIGGLSFETTDDSLREHFEK	Unmodified	2568.286	0.28601785	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	4	0				1		20.23	20.23	3	5.0324E-08	14063	DP1141_19	105.92	75.878			32385000	767	193	721	1344	1920	1920		0	9606
KLFIGGLSFETTEESLR	Unmodified	1926.0098	0.0098429899	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4.33	0.471				2	1	20.832	20.832	2;3	1.0807E-105	15222	DP1141_19	167.29	133.1			194080000	768	134	722	1345;1346;1347	1921;1922;1923	1921		3	9606
KLFVGGIKEDTEEHHLR	Unmodified	2007.0538	0.05377349	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	2	4.4	0.49				3	2	15.831	15.831	3;4;5	2.7239E-10	7393	DP1141_19	153.2	0			1390400000	769	134	723	1348;1349;1350;1351;1352	1924;1925;1926;1927;1928;1929;1930	1927		3	9606
KLFVGGLK	Unmodified	860.54837	0.54837396	303	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	1	4	0				1		16.27	16.27	2	0.0094493	7973	DP1141_19	102.77	0			335840000	770	303	724	1353	1931	1931		1	9606
KLGVQTVAVYSEADR	Unmodified	1634.8628	0.86278482	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.67	1.25	1		1	1		17.23	17.23	3	8.384100000000001E-25	9326	DP1141_18	140.77	113.36			307700000	771	405	725	1354;1355;1356	1932;1933;1934	1933		2	9606
KLHYNEGLNIK	Unmodified	1327.7248	0.72483478	167	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	0	1	5	0					1	15.484	15.484	3	1.3903000000000002E-30	7153	DP1141_20	156.58	106.13			36937000	772	167	726	1357	1935	1935		1	9606
KLYDIDVAK	Unmodified	1063.5914	0.59136099	232	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	16.536	16.536	2	2.9083E-05	8852	DP1141_20	122.96	62.943			72556000	773	232	727	1358	1936	1936		1	9606
KMVDPEKPQLGMIDR	2 Oxidation (M)	1787.891	0.89099018	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	2	2	0		1				15.354	15.354	4	0.030976	6460	DP1141_17	40.983	10.245			14446000	774	101	728	1359	1937	1937	88;89	1	9606
KNLLVTMLIDQLCGR	Oxidation (M)	1788.959	0.95901017	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					22.399	22.399	2;3	0.00071437	17440	DP1141_16	109.39	60.109			8796900	775	302	729	1360;1361	1938;1939;1940	1940	274	3	9606
KPAQEETEETSSQESAEED	Unmodified	2122.8662	0.86621104	198	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	1	5	0					1	13.996	13.996	2	0.034827	4778	DP1141_20	103.97	89.184			0	776	198	730	1362	1941	1941		1	9606
KPGTLQDQHFSQANR	Unmodified	1725.8547	0.85467975	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.75	0.829		2	1	1		14.244	14.244	3;4	1.1018E-06	4708	DP1141_17	126.56	101.6			99507000	777	343	731	1363;1364;1365;1366	1942;1943;1944;1945;1946;1947	1942		5	9606
KPLPDHVSIVEPKDEILPTTPISEQK	Unmodified	2909.575	0.57498923	135	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	3	1.41	1			2		18.234	18.234	3;4	4.7169E-08	11372	DP1141_19	85.777	72.755			149240000	778	135	732	1367;1368;1369	1948;1949;1950;1951	1951		4	9606
KPPLLNNADSVQAK	Unmodified	1493.8202	0.82019173	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2.4	1.02	1	2	1	1		15.327	15.327	2;3	3.0874E-55	6489	DP1141_19	155.39	114.29			2124599999.9999998	779	101	733	1370;1371;1372;1373;1374	1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963	1962		12	9606
KPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGK	Unmodified	3492.7664	0.76642087	285	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			13.85	13.85	6	2.2938E-07	4077	DP1141_18	64.305	51.215			38288000	780	285	734	1375	1964	1964		1	9606
KPVIVFVPSR	Unmodified	1140.7019	0.70191449	59	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	1	0	1					17.439	17.439	2	0.001352	9586	DP1141_16	118.18	81.782			10800000	781	59	735	1376	1965	1965		0	9606
KQGTIFLAGPPLVK	Unmodified	1467.8813	0.88133542	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.67	1.25	2		2	2		18.832	18.832	2;3	2.0870000000000002E-83	11972	DP1141_18	199.12	164.92			703510000	782	427	736	1377;1378;1379;1380;1381;1382	1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976	1971		11	9606
KQISNLQQSISDAEQR	Unmodified	1843.9388	0.93880331	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					17.139	17.139	3	0.00061015	9048	DP1141_16	99.747	74.829		+	30976000	783	74	737	1383	1977	1977		1	9606
KQMVIDVLHPGK	Oxidation (M)	1379.7595	0.75950572	237	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	5	0					1	15.822	15.822	3	0.00075842	7585	DP1141_20	130.69	94.157			111590000	784	237	738	1384	1978;1979	1978	216	2	9606
KQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGK	Unmodified	4407.0078	0.0077859487	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	2	2.5	0.5		1	1			15.472	15.472	5	2.7502E-15	6563	DP1141_17	63.796	48.979			40227000	785	297	739	1385;1386	1980;1981	1980		2	9606
KQTALVELLK	Unmodified	1141.7071	0.70705945	22	CON__P02769			yes	yes	0	0	1	4	0				1		18.229	18.229	2	0.014713	11107	DP1141_19	105.2	39.73		+	3959600	786	22	740	1387	1982	1982		0	
KQVAVVAQFDPVRMMSDTMASK	2 Oxidation (M)	2470.2018	0.20183599	381	Q8NFR7	CCDC148	Coiled-coil domain-containing protein 148	yes	yes	0	2	2	1	0	1					19.718	19.718	3	0.026357	13272	DP1141_16	49.34	16.093			0	787	381	741	1388	1983	1983	346;347;348	1	9606
KQVVNIPSFIVR	Unmodified	1398.8347	0.83471958	177	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					2	19.266	19.266	2;3	0.010837	13387	DP1141_20	83.226	66.203			84779000	788	177	742	1389;1390	1984;1985	1984		2	9606
KSDVEAIFSK	Unmodified	1122.5921	0.59208927	95	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		17.243	17.243	2	2.0750999999999998E-132	9391	DP1141_19	220.82	127.62			212400000	789	95	743	1391	1986;1987;1988	1986		3	9606
KSGVSDHWALDDHHALHLTR	Unmodified	2294.1305	0.13046068	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.5	1.12	2	2	2	2		16.603	16.603	3;4;5	4.1438E-11	8319	DP1141_18	139.78	112.75			710920000	790	427	744	1392;1393;1394;1395;1396;1397;1398;1399	1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001	1994		13	9606
KSPLAQDSPSQGSPALYR	Unmodified	1900.9643	0.96428978	352	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	1	2	0		1				16.574	16.574	3	0.036145	8345	DP1141_17	49.924	23.958			0	791	352	745	1400	2002	2002		1	9606
KSTYSLSSILTLPSSEYQSHDAYTCEVSHK	Unmodified	3417.6035	0.60346518	29	CON__Q05B55			yes	yes	0	0	1	5	0					2	19.661	19.661	3;4	2.1073999999999998E-36	13957	DP1141_20	146.06	124.61		+	118800000	792	29	746	1401;1402	2003;2004	2003		2	
KTEELEEESFPER	Unmodified	1621.7471	0.74714594	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0.816	2	2	2			16.44	16.44	2;3	2.2399E-67	8331	DP1141_17	225.15	158.96			252240000	793	457	747	1403;1404;1405;1406;1407;1408	2005;2006;2007;2008;2009;2010;2011;2012;2013;2014;2015;2016	2012		12	9606
KTGQPMINLYTDR	Unmodified	1535.7766	0.77661235	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3	0			1			17.533	17.533	3	0.00098758	9829	DP1141_18	93.478	56.906			40557000	794	153	748	1409	2017;2018	2017		2	9606
KTGQPMINLYTDR	Oxidation (M)	1551.7715	0.77152697	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3	0			1			16.554	16.554	3	0.00046851	8119	DP1141_18	112.62	84.191			91877000	795	153	748	1410	2019	2019	161	0	9606
KTGQPMINLYTDRETGK	Oxidation (M)	1966.9782	0.97822529	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	2	3	0			2			15.784	15.784	3;4	1.2902E-34	6996	DP1141_18	174.4	128.95			188860000	796	153	749	1411;1412	2020;2021	2020	161	2	9606
KTGQPMINLYTDRETGK	Unmodified	1950.9833	0.98331066	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	2	3	0			1			16.618	16.618	4	0.024082	8308	DP1141_18	66.939	40.168			18676000	797	153	749	1413	2022	2022		0	9606
KTNEETILEQSEMMKPESPEEIR	2 Oxidation (M)	2779.2892	0.28919025	438	Q9P1V8	SAMD15	Sterile alpha motif domain-containing protein 15	yes	yes	0	2	2	1	0	1					18.864	18.864	3	0.029899	11960	DP1141_16	47.499	19.095			0	798	438	750	1414	2023	2023	402;403	1	9606
KTQMAEVLPSPR	Oxidation (M)	1371.718	0.71803484	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	1	1	0	1					14.836	14.836	3	0.015907	5525	DP1141_16	86.288	48.862			7375900	799	110	751	1415	2024	2024	111	1	9606
KTTHFVEGGDAGNREDQINR	Unmodified	2243.0679	0.067920004	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	4	0				1		14.261	14.261	4	0.018003	4832	DP1141_19	82.121	56.205			91099000	800	126	752	1416	2025;2026	2025		2	9606
KTVTAMDVVYALK	Oxidation (M)	1453.7851	0.78505177	234	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	18.28	18.28	2;3	0.0024695	11892	DP1141_20	132.14	87.121			1781999999.9999998	801	234	753	1417;1418	2027;2028;2029	2028	212	3	9606
KTVTAMDVVYALK	Unmodified	1437.7901	0.79013715	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					2	19.764	19.764	2;3	1.3646999999999999E-21	14211	DP1141_20	173.76	109.32			1881799999.9999998	802	234	753	1419;1420	2030;2031;2032	2031		3	9606
KTVTAMDVVYALKR	Oxidation (M)	1609.8862	0.8861628	234	P62805	HIST1H4A	Histone H4	yes	yes	0	1	2	5	0					2	17.75	17.75	2;4	0.0042254	10946	DP1141_20	105.36	66.554			86525000	803	234	754	1421;1422	2033;2034;2035;2036	2035	212	4	9606
KVACIGAWHPAR	Unmodified	1364.7136	0.71355858	162	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	1	1	0	1					15.632	15.632	3	7.3414E-16	6659	DP1141_16	161.67	118.86			70399000	804	162	755	1423	2037	2037		1	9606
KVEEAEPEEFVVEK	Unmodified	1660.8196	0.8195826	304	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	1	5	0					1	17.077	17.077	3	0.00043437	9717	DP1141_20	115.09	87.419			251260000	805	304	756	1424	2038	2038		1	9606
KVEEVLEEEEEEYVVEK	Unmodified	2108.0049	0.004876771	261	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	1	5	0					2	19.226	19.226	2;3	0	13334	DP1141_20	369.51	300.25			263050000	806	261	757	1425;1426	2039;2040;2041	2040		3	9606
KVEWTSDTVDNEHMGR	Oxidation (M)	1918.8479	0.84793939	53	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	1	5	0					1	15.179	15.179	3	0.00024689	6588	DP1141_20	137.39	117.58			29803000	807	53	758	1427	2042;2043	2043	45	2	9606
KVLFTCFK	Unmodified	1041.5681	0.56812313	110;273	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	1	1	0	1					17.439	17.439	2	5.5474E-05	9720	DP1141_16	124.08	43.618			18961000	808	110;273	759	1428	2044	2044		0	9606
KVNNADDFPNLFR	Unmodified	1548.7685	0.76849051	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					19.322	19.322	2;3	1.8435E-98	12710	DP1141_16	209.19	167.1			1155700000	809	302	760	1429;1430	2045;2046;2047	2045		3	9606
KVPQVSTPTLVEVSR	Unmodified	1638.9305	0.93047046	22;21	CON__P02768-1;P02768;CON__P02769	ALB	Serum albumin	no	no	0	0	1	3.5	1.12		1	1	1	1	17.602	17.602	3	8.2491E-57	9901	DP1141_18	188.63	164.81		+	449740000	810	21;22	761	1431;1432;1433;1434	2048;2049;2050;2051;2052;2053	2049		6	9606
KVVNPLFEK	Unmodified	1072.6281	0.62808085	231	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		16.569	16.569	2	5.6397E-23	8534	DP1141_19	164.68	92.453			108490000	811	231	762	1435	2054;2055	2054		2	9606
KVVVVVPNEEDWKK	Unmodified	1667.9247	0.9246568	340	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	2	2	0		1				17.009	17.009	3	0.025833	9078	DP1141_17	102.33	82.551			27011000	812	340	763	1436	2056	2056		1	9606
LAADDFR	Unmodified	806.39227	0.39226725	25;15;23	CON__P02533;P02533;CON__A2A4G1;CON__Q04695;CON__P19012;P19012;CON__Q6IFX2;CON__Q9QWL7;Q04695;CON__Q9Z2K1;CON__Q3ZAW8;P08727;CON__P08727;CON__P19001;CON__O76013;CON__Q15323;CON__Q92764;CON__O76014;CON__P05784;CON__A2AB72;CON__Q497I4;CON__A2A5Y0;CON__REFSEQ:XP_986630;CON__Q14532;CON__Q14525;Q14525;Q15323;P05783;Q14532;Q92764;CON__Q9UE12;O76015;O76014;O76013;CON__O76015;CON__Q2M2I5;Q2M2I5;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7	KRT14;KRT15;KRT17;KRT19;KRT33B;KRT31;KRT18;KRT32;KRT35;KRT38;KRT37;KRT36;KRT24;KRT16;KRT10;KRT28	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1;Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha6;Keratin, type I cytoskeletal 24;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28	no	no	0	0	0	3	1.58	1	1		1	1	16.443	16.443	2	1.1185999999999999E-21	8058	DP1141_16	153.61	69.588		+	2106599999.9999998	813	15;23;25	764	1437;1438;1439;1440	2057;2058;2059;2060	2057		4	9606
LAALGGGAGPGAAEPEQR	Unmodified	1620.822	0.82198264	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	0.816		1	1	1		16.635	16.635	2	1.1153E-110	8536	DP1141_17	232.78	189.36			196250000	814	343	765	1441;1442;1443	2061;2062;2063;2064;2065	2061		5	9606
LAAQSCALSLVR	Unmodified	1287.6969	0.69690547	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				18.516	18.516	2	0.0072581	11501	DP1141_17	99.53	9.7782			0	815	288	766	1444	2066	2066		1	9606
LAEDEGDSEPEAVGQSR	Unmodified	1787.781	0.78096527	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	2	0		1				15.558	15.558	2	0	6811	DP1141_17	306.44	226.95			6814800	816	441	767	1445	2067;2068	2067		2	9606
LAELEEALQK	Unmodified	1142.6183	0.61830402	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	2	0		1				18.305	18.305	2	1.7564E-53	11214	DP1141_17	190.26	50.291		+	7458800	817	26	768	1446	2069;2070	2070		2	9606
LAGSPPGSGQWKPK	Unmodified	1408.7463	0.7462985	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2.33	0.471		2	1			15.44	15.44	2;3	2.9823000000000002E-30	6568	DP1141_17	172.21	129.93			847680000	818	343	769	1447;1448;1449	2071;2072;2073;2074;2075;2076	2075		6	9606
LAKMKIPPSEMFLSETDK	Oxidation (M)	2080.0584	0.058449441	187	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	1	2	4	0				1		14.73	14.73	4	0.034893	5507	DP1141_19	48.899	17.023			8873600	819	187	770	1450	2077	2077	183	1	9606
LALDLEIATYR	Unmodified	1276.7027	0.70270235	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				21.048	21.048	2	0.0064808	15426	DP1141_17	106.2	0		+	1948500	820	74	771	1451	2078	2078		1	9606
LALFNPDVCWDR	Unmodified	1504.7133	0.71328381	37	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	5	0					1	21.597	21.597	2	0.010165	17050	DP1141_20	98.048	62.384			11965000	821	37	772	1452	2079	2079		1	9606
LALQALTEK	Unmodified	985.5808	0.5807963	285	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.134	18.134	2	0.021551	10846	DP1141_18	89.698	18.402			12771000	822	285	773	1453	2080	2080		1	9606
LAPDYDALDVANK	Unmodified	1403.6933	0.69325988	232	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	18.609	18.609	2	0.0097728	12292	DP1141_20	103.31	73.761			130660000	823	232	774	1454	2081	2081		0	9606
LASYLDKVQALEEANNDLENK	Unmodified	2376.1809	0.18088408	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1					20.135	20.135	3	1.1186E-24	13883	DP1141_16	159.26	132.9		+	97467000	824	27	775	1455	2082	2082		1	9606
LATQLTGPVMPVR	Oxidation (M)	1397.7701	0.77007041	140	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	1	0	5	0					1	17.525	17.525	2	0.0010372	10497	DP1141_20	99.788	58.671			0	825	140	776	1456	2083	2083	148	1	9606
LAVEAVLR	Unmodified	869.53345	0.53345218	255	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			18.234	18.234	2	0.0011903	10810	DP1141_18	119.56	22.084			4652900	826	255	777	1457	2084	2084		1	9606
LAVNMVPFPR	Oxidation (M)	1158.6219	0.62194961	93;253;308	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	1	0	3	1.41	1	1	1	1	1	18.824	18.824	2	1.4849999999999998E-52	11780	DP1141_18	186.09	129.37			766870000	827	93;253;308	778	1458;1459;1460;1461;1462	2085;2086;2087;2088;2089;2090;2091;2092;2093;2094	2089	72	10	9606
LAVNMVPFPR	Unmodified	1142.627	0.62703499	93;253;308	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	0	3.5	0.5			1	1		20.082	20.082	2	4.7614E-80	13781	DP1141_18	201.49	139.02			102080000	828	93;253;308	778	1463;1464	2095;2096	2095		1	9606
LDAENAIVHMGGQWLGGR	Oxidation (M)	1938.937	0.93702917	268	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	1	0	4	0				1		19.429	19.429	3	0.0062493	13042	DP1141_19	77.726	48.363			90794000	829	268	779	1465	2097;2098	2097	237	2	9606
LDAENAIVHMGGQWLGGR	Unmodified	1922.9421	0.94211455	268	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	4	0				1		21.143	21.143	3	0.0039677	15528	DP1141_19	92.8	61.712			18165000	830	268	779	1466	2099	2099		1	9606
LDNASAFQGAVISPHYDSLLVK	Unmodified	2344.2063	0.20631097	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.2	1.17	2	1	1	1		20.412	20.412	2;3	1.5708E-160	14354	DP1141_16	223.44	169.92			961680000	831	112	780	1467;1468;1469;1470;1471	2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110	2100		11	9606
LDNMNVSRK	Oxidation (M)	1091.5393	0.53934219	366	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	1	1	1	0	1					15.255	15.255	2	0.032009	5842	DP1141_16	78.516	23.74			4539700	832	366	781	1472	2111	2111	330	0	9606
LECVEPNCR	Unmodified	1175.5063	0.50632751	260	Q969Q0;P83881	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	yes	no	0	0	0	5	0					1	14.853	14.853	2	1.1702E-22	6147	DP1141_20	162.5	137.73			25911000	833	260	782	1473	2112;2113	2112		2	9606
LEENIDNIKR	Unmodified	1242.6568	0.65681479	394	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	2	0		1				15.454	15.454	3	0.0038878	6554	DP1141_17	102.06	50.299			22719000	834	394	783	1474	2114	2114		1	9606
LEESVALR	Unmodified	915.50255	0.50254598	287	Q08209	PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	yes	yes	0	0	0	2	0		1				16.05	16.05	2	1.9427E-13	7763	DP1141_17	145.04	50.882			4841200	835	287	784	1475	2115	2115		1	9606
LELAQYR	Unmodified	891.48142	0.48141661	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.133	17.133	2	3.7374E-08	9196	DP1141_18	143.97	24.418			166050000	836	139	785	1476	2116	2116		0	9606
LELQGPR	Unmodified	811.4552	0.45520186	130	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0			1			15.931	15.931	2	0.0056856	7167	DP1141_18	126.68	54.726			0	837	130	786	1477	2117	2117		1	9606
LEPSTSTDQPVTPEPTSQATR	Unmodified	2241.0761	0.076084654	316	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	2	0		1				16.171	16.171	2	5.8641E-18	7877	DP1141_17	151.59	89.451			10228000	838	316	787	1478	2118	2118		1	9606
LEQMPSKEDAIEHFMK	2 Oxidation (M)	1963.9019	0.9019488	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	1	2	0		1				15.857	15.857	3	0.018297	7329	DP1141_17	55.975	20.672			81158000	839	101	788	1479	2119	2119	90;91	1	9606
LEQMPSKEDAIEHFMK	Oxidation (M)	1947.907	0.90703418	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2	0		1				16.909	16.909	3	0.00043682	8932	DP1141_17	119.04	84.862			90493000	840	101	788	1480	2120	2120	90;91	1	9606
LEQYTSAIEGTK	Unmodified	1338.6667	0.66671078	280	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	3	0			1			16.909	16.909	2	0.0049559	8760	DP1141_18	100.82	44.009			0	841	280	789	1481	2121	2121		1	9606
LFEGNALLR	Unmodified	1031.5764	0.57637963	177	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	19.183	19.183	2	2.6288E-16	13197	DP1141_20	148.04	65.372			0	842	177	790	1482	2122	2122		1	9606
LFIGGLSFETTDDSLR	Unmodified	1769.8836	0.88357984	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		22.32	22.32	2	0.0031457	17448	DP1141_19	104.24	58.329			10709000	843	193	791	1483	2123	2123		1	9606
LFIGGLSFETTEESLR	Unmodified	1797.9149	0.91487997	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4.5	0.5				1	1	22.303	22.303	2	1.1174E-10	17954	DP1141_20	171.32	127.81			638730000	844	134	792	1484;1485	2124;2125;2126	2125		3	9606
LFNLSKEDDVR	Unmodified	1334.683	0.68302954	233	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	1	4	0				1		17.428	17.428	2	8.1409E-11	9787	DP1141_19	137.46	69.966			6603700	845	233	793	1486	2127	2127		0	9606
LFPDTPLALDANK	Unmodified	1413.7504	0.75038083	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2.5	0.5		1	1			20.326	20.326	2	0.000798	14192	DP1141_18	108.47	54.976			26865000	846	297	794	1487;1488	2128;2129;2130;2131;2132;2133	2132		6	9606
LFPDTPLALDANKK	Unmodified	1541.8453	0.84534384	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	3	0			1			18.915	18.915	3	0.012169	11863	DP1141_18	63.185	37.843			8714100	847	297	795	1489	2134	2134		1	9606
LFPLIQAMHPTLAGK	Oxidation (M)	1651.912	0.91198362	113	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	1	0	3	0			1			19.234	19.234	3	0.00010435	12517	DP1141_18	115.24	79.477			41702000	848	113	796	1490	2135	2135	127	1	9606
LFVGGIKEDTEEHHLR	Unmodified	1878.9588	0.95881047	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4.5	0.5				2	2	16.333	16.333	3;4	2.2092E-217	7794	DP1141_19	244.23	0			2246500000	849	134	797	1491;1492;1493;1494	2136;2137;2138;2139;2140;2141	2136		6	9606
LFVGGIKEDTEEHHLRDYFEEYGK	Unmodified	2910.3824	0.38243743	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	2	4	0				2		19.557	19.557	4;5	0.004369	13171	DP1141_19	75.334	51.465			90474000	850	134	798	1495;1496	2142;2143;2144;2145	2143		4	9606
LGEHNIDVLEGNEQFINAAK	Unmodified	2210.0968	0.096760517	13	CON__P00761			yes	yes	0	0	0	1	0	2					19.585	19.585	2;3	1.2948E-17	13153	DP1141_16	148.06	107.97		+	83395000	851	13	799	1497;1498	2146;2147	2146		2	
LGGIPVGVVAVETR	Unmodified	1365.798	0.79799972	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	5	0					1	19.657	19.657	2	0.026218	13966	DP1141_20	77.674	40.99			26141000	852	302	800	1499	2148	2148		1	9606
LGTPELSTAER	Unmodified	1172.6037	0.60371659	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1.58	1	1		1	1	16.51	16.51	2	6.7288E-53	8009	DP1141_16	187.22	120.18			836930000	853	302	801	1500;1501;1502;1503	2149;2150;2151;2152;2153	2149		5	9606
LGTPELSTAERK	Unmodified	1300.6987	0.69867961	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					15.228	15.228	2;3	0.0010708	6139	DP1141_16	125.74	59.466			108680000	854	302	802	1504;1505	2154;2155	2154		2	9606
LGVQTVAVYSEADR	Unmodified	1506.7678	0.7678218	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	1	0	1					18.434	18.434	2	4.4073E-100	11158	DP1141_16	222.18	183.47			20033000	855	405	803	1506	2156	2156		0	9606
LHFFMPGFAPLTSR	Oxidation (M)	1635.8232	0.82316861	93;253;308	P07437;A6NNZ2;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	1	0	3.33	0.471			2	1		20.532	20.532	2;3	0.00011767	14723	DP1141_19	113.99	56.553			657500000	856	93;253;308	804	1507;1508;1509	2157;2158;2159;2160;2161	2160	73	5	9606
LHFFMPGFAPLTSR	Unmodified	1619.8283	0.82825399	93;253;308	P07437;A6NNZ2;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	0	3.33	0.471			2	1		21.901	21.901	2;3	0.00077497	16395	DP1141_18	110.39	46.693			176080000	857	93;253;308	804	1510;1511;1512	2162;2163;2164;2165;2166	2164		5	9606
LIALLEVLSQK	Unmodified	1225.7646	0.76457433	131	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	yes	no	0	0	0	1.5	0.5	1	1				23.192	23.192	2	2.4675E-05	18499	DP1141_16	138.98	83.605			7214200	858	131	805	1513;1514	2167;2168	2167		2	9606
LIDLDPSVDTLK	Unmodified	1327.7235	0.72349737	468				yes	yes	0	0	0	1	0	1					24.035	24.035	2	0.013739	19709	DP1141_16	95.502	27.278	+		30719000	859	468	806	1515	2169	2169		1	9606
LIEPEEVARR	Unmodified	1210.667	0.66698555	166	P50549;P41161	ETV1;ETV5	ETS translocation variant 1;ETS translocation variant 5	yes	no	0	0	1	4	0				1		15.137	15.137	3	0.015078	6180	DP1141_19	83.883	37.064			0	860	166	807	1516	2170	2170		1	9606
LIGEYGLR	Unmodified	919.51272	0.51271674	177	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	18.011	18.011	2	0.011534	11266	DP1141_20	110.63	61.043			229120000	861	177	808	1517	2171	2171		1	9606
LIIDDLSMDK	Unmodified	1161.5951	0.59512574	467				yes	no	0	0	0	1.5	0.5	1	1				16.788	16.788	2	0.01607	8742	DP1141_17	94.662	29.905	+		6499499999.999999	862	467	809	1518;1519	2172;2173	2173		2	9606
LIPDSIGKDIEK	Unmodified	1326.7395	0.73948179	211	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		17.328	17.328	3	0.010391	9672	DP1141_19	103.46	59.857			158710000	863	211	810	1520	2174	2174		0	9606
LISQIVSSITASLR	Unmodified	1486.8719	0.87189295	251;413;252	P68363;Q9H853;P68366;Q9BQE3;Q9NY65	TUBA1B;TUBA4B;TUBA4A;TUBA1C;TUBA8	Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	2.67	1.25	1		1	1		23.88	23.88	2	6.3938E-100	19708	DP1141_19	208.17	140.61			22547000	864	251;252;413	811	1521;1522;1523	2175;2176;2177;2178;2179;2180	2179		6	9606
LITNTAEAVLQK	Unmodified	1299.7398	0.73981614	356	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	4	0				1		18.167	18.167	2	0.0073371	11045	DP1141_19	135.43	60.509			3637200	865	356	812	1524	2181	2181		0	9606
LITPAVVSER	Unmodified	1083.6288	0.62880913	238	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	17.454	17.454	2	0.013022	10206	DP1141_20	98.033	57.004			50107000	866	238	813	1525	2182	2182		1	9606
LITQTFSHHNQLAQK	Unmodified	1764.9271	0.92711641	453	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				2		15.487	15.487	3;4	0.0017618	6699	DP1141_19	139.19	93.834			214250000	867	453	814	1526;1527	2183;2184;2185	2183		2	9606
LKEREEFLIPIYHQVAVQFADLHDTPGR	Unmodified	3320.7306	0.73059544	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	4	0				1		21.332	21.332	5	9.9754E-06	15928	DP1141_19	81.904	66.263			8441400	868	302	815	1528	2186	2186		1	9606
LKETGYVVERPSTTK	Unmodified	1706.9203	0.9202997	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	1.5	0.5	1	1				14.848	14.848	3	1.762E-14	5616	DP1141_17	187.63	123.77			162600000	869	435	816	1529;1530	2187;2188	2188		2	9606
LKGDDLQAIK	Unmodified	1099.6237	0.62372375	95	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		15.387	15.387	2	0.010516	6645	DP1141_19	139.38	35.325			118080000	870	95	817	1531	2189	2189		0	9606
LKGDDLQAIKK	Unmodified	1227.7187	0.71868677	95	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	2	4	0				1		14.261	14.261	3	1.8622E-13	4971	DP1141_19	160.77	76.459			150720000	871	95	818	1532	2190	2190		1	9606
LKGEATVSFDDPPSAK	Unmodified	1660.8308	0.83081599	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3	0			2			16.418	16.418	2;3	0.0014161	8047	DP1141_18	117.7	42.863			2528000000	872	153	819	1533;1534	2191;2192	2191		1	9606
LKQQSELQSQVR	Unmodified	1442.7841	0.78414057	320	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	1	4	0				1		14.336	14.336	3	0.0015719	5030	DP1141_19	131.12	80.325			25899000	873	320	820	1535	2193	2193		1	9606
LKVSELKEELK	Unmodified	1314.7759	0.7758673	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	2	0		1				16.595	16.595	3	0.0028421	8381	DP1141_17	136.5	78.968			0	874	267	822	1536	2194	2194		1	9606
LKYENEVALR	Unmodified	1233.6717	0.67173657	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3.2	1.83	2			1	2	16.29	16.29	2;3	5.3942E-11	8392	DP1141_20	148.56	108.98		+	585040000	875	25	823	1537;1538;1539;1540;1541	2195;2196;2197;2198;2199;2200;2201	2201		5	9606
LLDSLEPPGEPGPSTNIPENDTVDGR	Unmodified	2718.2984	0.29843303	390	Q92734	TFG	Protein TFG	yes	yes	0	0	0	3	0			2			19.834	19.834	2;3	1.0403E-05	13515	DP1141_18	127.49	102.62			57559000	876	390	824	1542;1543	2202;2203;2204	2203		3	9606
LLDSLEPPGEPGPSTNIPENDTVDGREEK	Unmodified	3104.4786	0.47858224	390	Q92734	TFG	Protein TFG	yes	yes	0	0	1	3.5	0.5			1	1		18.906	18.906	3	3.0188E-22	11986	DP1141_18	133.53	104.6			151360000	877	390	825	1544;1545	2205;2206;2207;2208;2209;2210	2208		6	9606
LLEQYKEESK	Unmodified	1265.6503	0.65033243	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				14.959	14.959	3	0.00031279	5759	DP1141_17	128.35	75.858			0	878	267	826	1546	2211	2211		1	9606
LLETESFQMNR	Unmodified	1366.6551	0.65510023	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.534	18.534	2	0	11430	DP1141_16	283.57	228.85			783030000	879	302	827	1547	2212	2212		1	9606
LLETESFQMNR	Oxidation (M)	1382.65	0.65001485	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.267	17.267	2	9.3821E-41	9387	DP1141_16	172.25	138.08			0	880	302	827	1548	2213	2213	275	1	9606
LLEVQGSRPGK	Unmodified	1182.6721	0.67207093	218	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	3.5	1.5	1			2	1	14.599	14.599	2;3	1.1684999999999999E-39	5142	DP1141_16	155.06	85.246			574930000	881	218	828	1549;1550;1551;1552	2214;2215;2216;2217;2218;2219	2214		6	9606
LLGASELPIVTPALR	Unmodified	1548.9239	0.92392852	195	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3.5	0.5			1	1		21.403	21.403	2	0.0054091	15863	DP1141_19	94.767	70.678			10309000	882	195	829	1553;1554	2220;2221	2221		1	9606
LLGGVTIAQGGVLPNIQAVLLPK	Unmodified	2270.3726	0.37258843	117	P16104;Q96QV6;Q8IUE6	H2AFX;HIST1H2AA;HIST2H2AB	Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B	yes	no	0	0	0	5	0					2	23.763	23.763	2;3	3.8966999999999997E-277	20078	DP1141_20	252.46	236.24			33520000	883	117	830	1555;1556	2222;2223;2224;2225	2222		4	9606
LLGQFTLIGIPPAPR	Unmodified	1591.945	0.94499831	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			2			22.773	22.773	2	2.6521999999999998E-300	17219	DP1141_18	264.17	238.06			60175000	884	159	831	1557;1558	2226;2227;2228;2229;2230	2226		5	9606
LLHYLGHVMVNGPTTPIPVK	Unmodified	2185.2082	0.20816564	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	2	2				19.094	19.094	2;3;4	4.0819E-09	12540	DP1141_17	132.23	106.89			106630000	885	112	832	1559;1560;1561;1562	2231;2232;2233;2234;2235;2236;2237	2234		7	9606
LLHYLGHVMVNGPTTPIPVK	Oxidation (M)	2201.2031	0.20308026	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.33	0.471		2	1			18.432	18.432	3;4	0.00018268	11079	DP1141_18	95.205	71.57			183320000	886	112	832	1563;1564;1565	2238;2239;2240;2241;2242;2243;2244;2245	2245	121	7	9606
LLILRCFRVDR	Unmodified	1459.8446	0.84457276	372	Q8IVF4	DNAH10	Dynein heavy chain 10, axonemal	yes	yes	0	0	2	3.5	0.5			1	1		19.832	19.832	2	0.00048937	13647	DP1141_19	122.52	32.366			200270000	887	372	833	1566;1567	2246;2247	2247		2	9606
LLLDTFEYQGLVK	Unmodified	1537.8392	0.83919583	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	3.5	0.5			1	1		22.045	22.045	2	8.8599E-22	16955	DP1141_19	166.34	93.105			914640000	888	367	834	1568;1569	2248;2249	2249		2	9606
LLLEDLVK	Unmodified	941.57973	0.57973367	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				20.969	20.969	2	0.00013542	15232	DP1141_17	148.33	44.216			432960000	889	302	835	1570;1571	2250;2251	2251		1	9606
LLLPGELAK	Unmodified	952.59572	0.59571809	206;136	Q16778;P33778;P23527;P06899;Q8N257;Q96A08;A0A2R8Y619;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	0	5	0					3	24.59	24.59	1;2	3.3327E-12	13145	DP1141_20	151.04	46.827			34694000000	890	136;206	836	1572;1573;1574	2252;2253;2254;2255;2256	2255		5	9606
LLLPWLEAR	Unmodified	1109.6597	0.65971533	266	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					22.894	22.894	2	0.00053976	18034	DP1141_16	117.4	58.584			11140000	891	266	837	1575	2257;2258	2258		2	9606
LLMIIHDRR	Unmodified	1165.6754	0.67538216	86	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	1	3	0			1			22.667	22.667	2	0.00018979	17626	DP1141_18	117.93	48.109			6974400	892	86	838	1576	2259	2259		1	9606
LLQAFLER	Unmodified	988.57057	0.57056597	203	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	1	0	1					19.635	19.635	2	0.014608	13303	DP1141_16	96.492	31.734			102150000	893	203	839	1577	2260	2260		1	9606
LLQDFFNGR	Unmodified	1108.5665	0.56654322	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	3	0			1			20.433	20.433	2	0.036694	14370	DP1141_18	86.472	32.918			790680000	894	105	840	1578	2261	2261		1	9606
LLQEEEQER	Unmodified	1172.5673	0.56733108	41	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	0	4	0				1		14.813	14.813	2	0.0025357	5697	DP1141_19	120.15	68.809			0	895	41	841	1579	2262	2262		1	9606
LLSMLDDVPK	Oxidation (M)	1145.6002	0.60021112	466				yes	yes	0	1	0	1	0	1					18.14	18.14	2	0.032089	10800	DP1141_16	90.37	26.836	+		2800700000	896	466	842	1580	2263	2263	425	1	9606
LLSNDEVTIK	Unmodified	1130.6183	0.61830402	390	Q92734	TFG	Protein TFG	yes	yes	0	0	0	3	0			1			17.133	17.133	2	2.9986E-09	9282	DP1141_18	146.69	61.429			210160000	897	390	843	1581	2264;2265	2264		2	9606
LLSNGHSAPEPR	Unmodified	1276.6524	0.65239812	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.75	1.2	1	3	2	1	1	13.795	13.795	2;3	1.1569E-205	3989	DP1141_18	225.22	152.9			284110000	898	343	844	1582;1583;1584;1585;1586;1587;1588;1589	2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278	2273		13	9606
LLSRPQDALEGVVLSPSLEAR	Unmodified	2249.2379	0.23794545	433	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	1	3	0			1			20.533	20.533	3	8.2857E-05	14356	DP1141_18	113.51	88.159			7961900	899	433	845	1590	2279	2279		1	9606
LLVPTQFVGAIIGK	Unmodified	1454.8861	0.88608645	36	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			23.049	23.049	2	0.0050429	18070	DP1141_18	96.015	0			11131000	900	36	846	1591	2280;2281	2280		2	9606
LLYAFAEATVPK	Unmodified	1321.7282	0.72818882	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.337	20.337	2	0.010172	14242	DP1141_18	98.04	46.694			28468000	901	82	847	1592	2282	2282		1	9606
LLYGESPWGVTPISFETPSNPPLAR	Unmodified	2727.3908	0.39081727	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.192	23.192	3	5.868899999999999E-93	18477	DP1141_16	158.33	129.17			9327200	902	39	848	1593	2283	2283		1	9606
LMDMGMLLPGHR	2 Oxidation (M)	1401.6567	0.65669691	401	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	2	0	5	0					1	17.735	17.735	2	0.014224	11029	DP1141_20	67.494	15.012			51240000	903	401	849	1594	2284	2284	361;362	1	9606
LMELQEAVRWTEMIRASR	2 Oxidation (M)	2250.1249	0.1249063	51	O60271;Q9UPT6	SPAG9;MAPK8IP3	C-Jun-amino-terminal kinase-interacting protein 4;C-Jun-amino-terminal kinase-interacting protein 3	yes	no	0	2	2	1	0	1					20.485	20.485	3	0.03237	14421	DP1141_16	51.695	18.837			0	904	51	850	1595	2285	2285	42;43	1	9606
LMMDPLSGQNR	2 Oxidation (M)	1292.5853	0.58530611	46	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	2	0	3	0			1			15.718	15.718	2	0.030513	6659	DP1141_18	56.432	20.994			13714000	905	46	851	1596	2286	2286	37;38	1	9606
LNDLEDALQQAK	Unmodified	1356.6885	0.68850885	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				19.204	19.204	2	0	12492	DP1141_17	335.87	242.27		+	18342000	906	74	852	1597	2287	2287		1	9606
LNHPPEQIDSHSR	Unmodified	1528.7383	0.73825301	383	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2.5	0.5		1	1			13.2	13.2	3	0.00012701	3241	DP1141_17	115.12	90.828			2916000	907	383	853	1598;1599	2288;2289;2290	2289		2	9606
LNIPVSQVNPR	Unmodified	1235.6986	0.69862003	78;115	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	1	0	1					17.64	17.64	2	0.019936	10019	DP1141_16	93.649	45.78			34203000	908	78;115	854	1600	2291	2291		1	9606
LNISFPATGCQK	Unmodified	1334.6653	0.66527099	233	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		18.728	18.728	2	6.4766E-06	11892	DP1141_19	166.86	124.88			17766000	909	233	855	1601	2292	2292		1	9606
LNISYTR	Unmodified	865.46577	0.46576654	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	1	0	1					16.527	16.527	2	0.0017386	8168	DP1141_16	124.37	52.424			120920000	910	405	856	1602	2293	2293		1	9606
LNNLVLFDK	Unmodified	1074.6073	0.6073454	238	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	19.764	19.764	2	0.01956	14046	DP1141_20	90.601	33.88			5932500	911	238	857	1603	2294	2294		1	9606
LNQLKPGLQYK	Unmodified	1300.7503	0.75032125	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	2	0		1				15.958	15.958	2	0.0013224	7333	DP1141_17	167.23	92.309			10137000	912	297	858	1604	2295	2295		0	9606
LPAAGVGDMVMATVK	2 Oxidation (M)	1490.7473	0.74728606	235	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					1	16.946	16.946	2	0.00010743	9599	DP1141_20	110.98	82.019			88493000	913	235	859	1605	2296;2297	2296	213;214	2	9606
LPCIYLVDSGGAYLPR	Unmodified	1792.9182	0.91819121	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		21.734	21.734	2;3	0	16298	DP1141_16	317.75	221.58			541620000	914	427	860	1606;1607;1608;1609	2298;2299;2300;2301;2302	2298		5	9606
LPEDPLLSGLLDSPALK	Unmodified	1776.9873	0.98731663	184	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					23.536	23.536	2	7.703E-12	19056	DP1141_16	154.23	119.73			6491000	915	184	861	1610	2303	2303		1	9606
LPEGSSGLSSYTPK	Unmodified	1421.7038	0.70382456	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3.4	1.02		1	2	1	1	17.352	17.352	2	9.856399999999999E-268	9494	DP1141_18	252.97	190.39			336840000	916	343	862	1611;1612;1613;1614;1615	2304;2305;2306;2307;2308;2309;2310;2311	2308		8	9606
LPELLLK	Unmodified	824.53714	0.53714057	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.57	19.57	2	3.5802E-37	13003	DP1141_16	170.31	36.195			1675699999.9999998	917	302	863	1616;1617	2312;2313;2314	2312		3	9606
LPGGNEIGMVAWK	Oxidation (M)	1386.6966	0.69657112	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.135	19.135	2	1.7418E-05	12425	DP1141_16	146.16	107.41			672260000	918	302	864	1618	2315;2316	2315	276	2	9606
LPGGNEIGMVAWK	Unmodified	1370.7017	0.70165649	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				20.17	20.17	2	3.6064E-29	13871	DP1141_16	186.81	109.15			1067399999.9999999	919	302	864	1619;1620	2317;2318	2317		1	9606
LPKPVQDLIK	Unmodified	1149.7121	0.71214483	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				18.005	18.005	2	1.8475E-06	10748	DP1141_17	131.5	71.067			49612000	920	101	865	1621	2319	2319		1	9606
LPLLPPESPGPLR	Unmodified	1384.8078	0.80783613	312	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	2	0		1				20.005	20.005	2	0.023105	13856	DP1141_17	88.496	15.262			27343000	921	312	866	1622	2320	2320		1	9606
LPLMIFANWR	Oxidation (M)	1275.6798	0.67979884	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					22.432	22.432	2	0.033983	17530	DP1141_16	89.298	53.787			2275300	922	39	867	1623	2321	2321	34	1	9606
LPLMIFANWR	Unmodified	1259.6849	0.68488422	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.569	23.569	2	0.010678	18979	DP1141_16	101.64	50.297			1461900	923	39	867	1624	2322	2322		1	9606
LPLQDVYK	Unmodified	974.54368	0.54368251	250	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.67	1.25	1		1	1		17.94	17.94	2	0.010257	10513	DP1141_16	111.82	43.433			351840000	924	250	868	1625;1626;1627	2323;2324;2325	2323		3	9606
LPPQDFLDR	Unmodified	1099.5662	0.56620887	285	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			18.705	18.705	2	0.0078555	11701	DP1141_18	95.909	51.515			14125000	925	285	869	1628	2326	2326		1	9606
LPQLPITNFSR	Unmodified	1284.719	0.71902112	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1.5	0.5	1	1				20.37	20.37	2	2.8993999999999996E-21	14398	DP1141_17	159.79	32.772			41074000	926	131	870	1629;1630	2327;2328;2329	2328		3	9606
LPSYLDK	Unmodified	834.44872	0.4487195	368	Q86TJ2	TADA2B	Transcriptional adapter 2-beta	yes	yes	0	0	0	1	0	1					17.831	17.831	2	5.1293E-09	10238	DP1141_16	138.24	52.883			23033000	927	368	871	1631	2330	2330		0	9606
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	Oxidation (M)	3141.4269	0.4268978	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	1	2	0		1				18.105	18.105	3	5.8955E-10	11006	DP1141_17	89.186	76.415			46792000	928	267	872	1632	2331	2331	235	1	9606
LQDAEEMKK	Oxidation (M)	1106.5278	0.52777445	52	O60282	KIF5C	Kinesin heavy chain isoform 5C	yes	yes	0	1	1	3	0			1			16.305	16.305	2	0.030267	7607	DP1141_18	79.469	30.713			53060000	929	52	873	1633	2332	2332	44	0	9606
LQDEIQNMKEEMAR	2 Oxidation (M)	1765.7975	0.79748373	98	P08670	VIM	Vimentin	yes	yes	0	2	1	4	1			1		1	14.323	14.323	3	0.024173	5256	DP1141_20	52.101	17.775			54492000	930	98	874	1634;1635	2333;2334	2334	79;80	2	9606
LQHVEDGVLSMQVASAR	Oxidation (M)	1854.9258	0.92579578	285	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	1	0	3	0			1			16.907	16.907	3	0.034948	8835	DP1141_18	51.487	35.966			33521000	931	285	875	1636	2335	2335	250	1	9606
LQLLEDDKENR	Unmodified	1371.6994	0.69940789	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2.33	0.471		2	1			16.416	16.416	2;3	1.4319E-79	8163	DP1141_17	174.41	124.99			151900000	932	101	876	1637;1638;1639	2336;2337;2338	2336		3	9606
LQMEQQQQLQQR	Oxidation (M)	1572.7678	0.76783858	431	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	0	5	0					1	14.328	14.328	2	0.0022637	5371	DP1141_20	131.5	63.8			17409000	933	431	877	1640	2339	2339	399	1	9606
LQSIGTENTEENR	Unmodified	1489.7009	0.70086445	72	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	5	0					1	15.136	15.136	2	1.1332E-13	6515	DP1141_20	146.11	93.851			0	934	72	878	1641	2340	2340		1	9606
LQSIGTENTEENRR	Unmodified	1645.802	0.80197548	72	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	4	0				1		14.336	14.336	3	0.007104	4914	DP1141_19	123.95	88.292			28651000	935	72	879	1642	2341	2341		1	9606
LQTTLTCNSMVLFDHMGCLKK	Unmodified	2496.1997	0.1997275	273	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	1	3	0			1			18.234	18.234	3	0.014563	10921	DP1141_18	51.684	17.465			77453000	936	273	880	1643	2342	2342		1	9606
LQVEHPCTEMVADVNLPAAQLQIAMGIPLYR	2 Oxidation (M)	3508.7517	0.75166651	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					21.647	21.647	3	0.024464	16136	DP1141_16	41.661	20.043			0	937	302	881	1644	2343	2343	277;278	1	9606
LQVEHPVTECITGLDLVQEMIR	Oxidation (M)	2595.3037	0.30365852	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.5	1.5	1			1		20.621	20.621	3	0.0020948	14612	DP1141_16	76.668	47.855			29480000	938	81	882	1645;1646	2344;2345;2346	2344	59	3	9606
LRAEPDHMVLGK	Oxidation (M)	1380.7184	0.71836919	168	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	1	1.67	0.471	1	2				14.169	14.169	3	0.00094724	4515	DP1141_16	123.62	92.745			6428600	939	168	883	1647;1648;1649	2347;2348;2349	2347	170	2	9606
LSDFNDITNMLLLK	Oxidation (M)	1651.8491	0.84910859	256	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22.278	22.278	2	0.034076	17077	DP1141_16	87.363	47.738			0	940	256	884	1650	2350	2350	228	1	9606
LSDGGLLLSYDGSSYTTYMKEEVDR	Oxidation (M)	2814.2906	0.29057046	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					20.035	20.035	3	0.00072119	13914	DP1141_16	97.059	74.684			41812000	941	302	885	1651	2351	2351	279	1	9606
LSPEDYTLK	Unmodified	1064.539	0.53899107	92	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	4	0				1		17.828	17.828	2	0.0077632	10744	DP1141_19	104.06	38.254			8670700	942	92	886	1652	2352	2352		1	9606
LSSPATLNSR	Unmodified	1044.5564	0.55637247	13	CON__P00761			yes	yes	0	0	0	3	1.41	1	1	1	1	1	15.316	15.316	2	1.7564E-53	6250	DP1141_17	190.26	126.05		+	1707699999.9999998	943	13	887	1653;1654;1655;1656;1657	2353;2354;2355;2356;2357;2358;2359;2360;2361;2362	2355		9	
LSSQEAASSFGDDRLLIEK	Unmodified	2065.0328	0.032763277	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	1	0	1					18.935	18.935	3	5.3745E-06	12170	DP1141_16	135.09	104.94			22868000	944	81	888	1658	2363	2363		1	9606
LTDCVVMRDPASK	Oxidation (M)	1506.717	0.71704856	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	4	0				1		14.73	14.73	2	1.0639E-13	5472	DP1141_19	155.47	117.78			122750000	945	134	889	1659	2364;2365	2364	139	2	9606
LTDCVVMRDPASK	Unmodified	1490.7221	0.72213394	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				2		16.069	16.069	2;3	1.0444E-114	7772	DP1141_19	214.04	147.72			260850000	946	134	889	1660;1661	2366;2367	2366		1	9606
LTDCVVMRDPASKR	Oxidation (M)	1662.8182	0.81815959	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	2	4.5	0.5				1	1	14.082	14.082	3;4	0.017225	4465	DP1141_19	63.602	40.692			90466000	947	134	890	1662;1663	2368;2369;2370	2368	139	3	9606
LTLFVNGQPR	Unmodified	1143.64	0.64004252	390	Q92734	TFG	Protein TFG	yes	yes	0	0	0	4	1			1		1	18.736	18.736	2	2.0054E-31	11653	DP1141_18	176.09	117.49			274450000	948	390	891	1664;1665	2371;2372;2373;2374	2371		3	9606
LTLIDPETLLPR	Unmodified	1379.8024	0.8024164	371	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2.5	0.5		1	1			22.622	22.622	2	8.398800000000001E-41	17680	DP1141_17	180.09	127.15			6724200	949	371	892	1666;1667	2375;2376;2377;2378	2376		4	9606
LTMLDIASNR	Oxidation (M)	1148.586	0.58595803	329	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		17.092	17.092	2	0.014015	9357	DP1141_19	104.01	43.994			27700000	950	329	893	1668	2379	2379	311	1	9606
LTPEEEEILNK	Unmodified	1313.6715	0.6714618	219	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	18.043	18.043	2	1.4902E-65	11354	DP1141_20	181.55	132.01			0	951	219	894	1669	2380	2380		1	9606
LTQTSGETTHTDKVPGGEDK	Unmodified	2099.9971	0.99710605	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				12.694	12.694	4	0.0076173	2884	DP1141_17	62.617	40.941			3381800	952	173	895	1670	2381	2381		1	9606
LTQTSGQSTHTHKEPASGDEGIK	Unmodified	2408.1568	0.15679459	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				12.6	12.6	4	0.0010607	2748	DP1141_17	76.533	55.946			4286300	953	173	896	1671	2382	2382		1	9606
LTSFIGAIAIGDLVK	Unmodified	1516.8865	0.88648038	255	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			23.394	23.394	2	0.0029857	18681	DP1141_18	98.105	58.232			4679700	954	255	897	1672	2383	2383		1	9606
LTTPTYGDLNHLVSATMSGVTTCLR	Oxidation (M)	2723.3259	0.32585053	93;253;308	P07437;P68371;P04350;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3	0			1			20.933	20.933	3	0.002445	15115	DP1141_18	58.054	37.032			22902000	955	93;253;308	898	1673	2384	2384	74	1	9606
LTWHAYPEDAENKEKETAK	Unmodified	2259.0808	0.080776102	172	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	2	5	0					1	15.746	15.746	4	4.506E-05	7536	DP1141_20	121.03	97.93			79224000	956	172	899	1674	2385	2385		1	9606
LTWHSCPEDEAQ	Unmodified	1471.6038	0.60379294	304	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	16.982	16.982	2	1.8626999999999998E-21	9579	DP1141_20	166.09	128.58			363290000	957	304	900	1675	2386;2387	2387		2	9606
LVEVPNDGGPLGIHVVPFSAR	Unmodified	2172.1691	0.1691376	383	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2.5	0.5		1	1			20.719	20.719	3	0.0018173	15023	DP1141_17	95.5	62.095			25454000	958	383	901	1676;1677	2388;2389;2390	2388		3	9606
LVNELTEFAK	Unmodified	1162.6234	0.6233894	22	CON__P02769			yes	yes	0	0	0	5	0					1	19.166	19.166	2	4.4600000000000003E-41	13185	DP1141_20	181.55	121.07		+	199000000	959	22	902	1678	2391;2392	2391		2	
LVNHFVEEFKR	Unmodified	1416.7514	0.75138388	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	1	3.5	0.5			1	1		17.114	17.114	3	1.9838000000000002E-30	9134	DP1141_18	170.89	124.16			843220000	960	105	903	1679;1680	2393;2394;2395;2396	2394		4	9606
LVSIGAEEIVDGNAK	Unmodified	1513.7988	0.79878758	47	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	2	0		1				18.971	18.971	2	0.0088336	12228	DP1141_17	125.97	83.575			0	961	47	904	1681	2397	2397		1	9606
LVSSDPEINTK	Unmodified	1201.619	0.6190323	453	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		15.387	15.387	2	0.0029409	6566	DP1141_19	114.51	68.056			30872000	962	453	905	1682	2398	2398		1	9606
LVVWAADR	Unmodified	928.51305	0.51305109	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			18.337	18.337	2	2.91E-12	11135	DP1141_16	173.59	79.429			1224100000	963	405	906	1683;1684	2399;2400	2399		1	9606
LWQTVVGK	Unmodified	929.53345	0.53345218	459	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	4	0				1		17.784	17.784	2	0.011444	10446	DP1141_19	120.65	61.004			0	964	459	907	1685	2401	2401		1	9606
LYGSAGPPPTGEEDTAEKDEL	Unmodified	2174.9855	0.98553831	107	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			18.134	18.134	2	0.032515	10946	DP1141_18	67.93	42.283			12817000	965	107	908	1686	2402	2402		1	9606
LYSPSQIGAFVLMK	Unmodified	1552.8323	0.83233632	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			22.279	22.279	2	0.004326	17074	DP1141_18	127.42	99.559			5491700	966	159	909	1687	2403	2403		1	9606
LYSPSQIGAFVLMK	Oxidation (M)	1568.8273	0.82725094	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	0	3	0			1			21.571	21.571	2	0.003567	15907	DP1141_18	108.7	68.824			0	967	159	909	1688	2404	2404	166	1	9606
MAALEVYVR	Oxidation (M)	1066.5481	0.54811597	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.84	17.84	2	8.2739E-05	10345	DP1141_16	122.13	54.147			1124800000	968	302	910	1689	2405	2405	280	1	9606
MAAPIPQGFSCLSR	Acetyl (Protein N-term);Oxidation (M)	1591.7487	0.74868304	415	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	1	1	0	1	0	1					19.235	19.235	2	0.022298	12243	DP1141_16	49.5	6.6981			84615000	969	415	911	1690	2406	2406	381	1	9606
MAAVLGALGATRR	Acetyl (Protein N-term);Oxidation (M)	1343.7344	0.73435361	421	Q9H0N5	PCBD2	Pterin-4-alpha-carbinolamine dehydratase 2	yes	yes	1	1	1	4	0				1		31.537	31.537	2	0.033189	29533	DP1141_19	47.603	15.843			0	970	421	912	1691	2407	2407	390	1	9606
MADALDNYVIR	Oxidation (M)	1295.618	0.61798644	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	1.5	0.5	1	1				18.947	18.947	2	3.5856E-21	12111	DP1141_16	156.92	94.335			0	971	81	913	1692;1693	2408;2409	2408	60	2	9606
MADEAVCVGPAPTSK	Oxidation (M)	1547.696	0.69597877	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		15.657	15.657	2	0	6792	DP1141_18	312.95	264.86			162930000	972	81	914	1694;1695;1696	2410;2411;2412;2413;2414	2412	61	5	9606
MADGLFRR	Acetyl (Protein N-term);Oxidation (M)	1022.4967	0.4967491	2	A0A494C1I1			yes	yes	1	1	1	2	0		1				21.001	21.001	2	0.030835	15307	DP1141_17	60.961	8.278			0	973	2	915	1697	2415	2415	1	1	9606
MAEEREPELYLKWK	Acetyl (Protein N-term);Oxidation (M)	1878.9186	0.91858514	347	Q5T5N4	C6orf118	Uncharacterized protein C6orf118	yes	yes	1	1	2	1	0	1					25.5	25.5	2	0.033964	21803	DP1141_16	45.879	7.9111			3845800	974	347	916	1698	2416	2416	321	1	9606
MAELTALESLIEMGFPR	Acetyl (Protein N-term);Oxidation (M)	1964.9587	0.9587354	277	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	1	1	0	2	0		1				19.739	19.739	2	0.026301	13400	DP1141_17	60.691	17.086			0	975	277	917	1699	2417	2417	248	1	9606
MAIMVQSPMFDGK	3 Oxidation (M)	1501.6615	0.66150752	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	3	0	3.33	1.25		1	1		1	17.589	17.589	2	1.7819E-06	10077	DP1141_17	146.16	108.56			78843000	976	101	918	1700;1701;1702	2418;2419;2420;2421;2422;2423;2424;2425	2420	92;93;94	8	9606
MAIMVQSPMFDGK	2 Oxidation (M)	1485.6666	0.6665929	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	0	2	0		1				18.637	18.637	2	5.757E-15	10911	DP1141_17	157.78	121.11			37540000	977	101	918	1703	2426;2427;2428;2429;2430	2426	92;93;94	5	9606
MAIMVQSPMFDGK	Oxidation (M)	1469.6717	0.67167827	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2	0		1				19.28	19.28	2	0.00013387	12767	DP1141_17	140.07	100.07			22783000	978	101	918	1704	2431;2432	2432	92;93;94	2	9606
MAKVTSEPQK	Acetyl (Protein N-term);Oxidation (M)	1175.5856	0.58562368	1	P0DPH9;A0A1B0GTR3			yes	no	1	1	1	2	0		1				19.448	19.448	2	0.030236	12959	DP1141_17	64.42	15.626			0	979	1	919	1705	2433	2433	0	1	9606
MALEQALQAARQGELDVLR	Acetyl (Protein N-term);Oxidation (M)	2169.1212	0.12120113	7	B1AK53	ESPN	Espin	yes	yes	1	1	1	1	0	1					24.504	24.504	2	0.034204	20378	DP1141_16	40.066	13.834			0	980	7	920	1706	2434	2434	2	1	9606
MALLMAEMSRLVR	3 Oxidation (M)	1567.7884	0.78843937	127	P18206	VCL	Vinculin	yes	yes	0	3	1	1	0	1					16.491	16.491	3	0.010966	8190	DP1141_16	65.842	19.773			38375000	981	127	921	1707	2435;2436	2435	134;135;136	2	9606
MAPFPEEVDVFTAPHWRMK	2 Oxidation (M)	2319.0816	0.081644499	443	Q9UKA1	FBXL5	F-box/LRR-repeat protein 5	yes	yes	0	2	1	3	0			1			15.681	15.681	3	0.017588	6772	DP1141_18	68.283	36.483			0	982	443	922	1708	2437	2437	410;411	1	9606
MAQRSGKITLYEGK	Acetyl (Protein N-term);Oxidation (M)	1638.8399	0.83994089	387	Q8WXF5	CRYGN	Gamma-crystallin N	yes	yes	1	1	2	5	0					1	19.876	19.876	2	0.018633	14276	DP1141_20	68.557	26.222			0	983	387	923	1709	2438	2438	350	1	9606
MAVTFIGNSTAIQELFK	Oxidation (M)	1884.9655	0.96553533	93	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	4	0.816			1	1	1	22.739	22.739	2	0	17980	DP1141_19	281.26	189.02			403860000	984	93	924	1710;1711;1712	2439;2440;2441;2442;2443	2440	75	5	9606
MDEPSPLAQPLELNQHSR	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	1.5	0.5	1	1				19.432	19.432	2	0	12934	DP1141_16	286.74	233.18			499610000	985	302	925	1713;1714	2444;2445;2446;2447	2444	281	4	9606
MDEPSPLAQPLELNQHSR	Acetyl (Protein N-term)	2103.0055	0.0055026685	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	1	0	1					20.335	20.335	2	0	14322	DP1141_16	278.64	201.36			105690000	986	302	925	1715	2448;2449;2450	2448		3	9606
MEEKEDKHQQHK	Acetyl (Protein N-term)	1607.7362	0.7362041	375	Q8N5S3	C2orf73	Uncharacterized protein C2orf73	yes	yes	1	0	2	1.67	0.471	1	2				19.304	19.304	2	0.00010494	12793	DP1141_17	120.31	29.219			26851000	987	375	926	1716;1717;1718	2451;2452;2453;2454	2452		4	9606
MEEPQSDPSVEPPLSQETFSDLWK	Acetyl (Protein N-term);Oxidation (M)	2833.264	0.26402136	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	1	1	0	3	0			2			23.932	23.932	2;3	3.7612999999999996E-19	19448	DP1141_18	143.4	115.05			16198000	988	76	927	1719;1720	2455;2456;2457;2458	2455	57	4	9606
MEGPLSVFGDR	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	124	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	1	0	3	0			1			22.362	22.362	2	0.015776	17143	DP1141_18	66.92	44.279			4678900	989	124	928	1721	2459	2459	132	1	9606
MEKEGLEIMIGK	2 Oxidation (M)	1408.6942	0.69418786	430	Q9NQC7	CYLD	Ubiquitin carboxyl-terminal hydrolase CYLD	yes	yes	0	2	1	2	0		1				17.45	17.45	2	0.014119	9778	DP1141_17	93.598	13.358			0	990	430	929	1722	2460	2460	397;398	1	9606
MEKPPAPPSLPAGPPGVK	Oxidation (M)	1784.9495	0.94949134	328	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	1	3	0			1			17.133	17.133	3	0.024556	9214	DP1141_18	73.918	43.435			38468000	991	328	930	1723	2461	2461	310	1	9606
MELITILEK	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	321	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	1	0	2.67	1.25	1		1	1		23.994	23.994	2	0.0055206	19571	DP1141_18	86.67	43.035			11774000	992	321	931	1724;1725;1726	2462;2463;2464;2465;2466	2463	306	5	9606
MENAGVNFVVSGR	Oxidation (M)	1394.6612	0.66124824	451	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	1	0	2	0		1				17.946	17.946	2	2.3618E-67	10583	DP1141_17	182.92	105.6			0	993	451	932	1727	2467	2467	414	1	9606
MESAGLEQLLR	Acetyl (Protein N-term);Oxidation (M)	1303.6442	0.6442012	384	Q8TEX9	IPO4	Importin-4	yes	yes	1	1	0	2	0		1				22.155	22.155	2	1.5929E-05	17001	DP1141_17	134.25	94.625			2122600	994	384	933	1728	2468	2468	349	1	9606
METVVTSPMEGTVRK	2 Oxidation (M)	1695.8172	0.81715654	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	1.5	0.5	1	1				23.078	23.078	2	0.0075169	18368	DP1141_17	72.434	6.244			24825000	995	112	934	1729;1730	2469;2470;2471;2472	2472	122;123	4	9606
MEVKPPPGRPQPDSGR	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	3.4	1.36	1		1	2	1	14.499	14.499	2;3	0.00056459	5236	DP1141_19	99.941	62.328			774340000	996	193	935	1731;1732;1733;1734;1735	2473;2474;2475;2476;2477;2478;2479	2477	188	5	9606
MEVKPPPGRPQPDSGR	Acetyl (Protein N-term)	1788.8941	0.89410173	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	0	2	4	0				2		15.682	15.682	2;3	0.006405	7171	DP1141_19	75.89	40.296			5468900	997	193	935	1736;1737	2480;2481	2480		2	9606
MFIGGLSWDTSKK	Unmodified	1468.7384	0.73843593	42	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	1	4	0				1		19.73	19.73	2	3.6373E-09	13502	DP1141_19	152.07	96.699			110440000	998	42	936	1738	2482	2482		1	9606
MFIGGLSWDTTK	Unmodified	1354.6591	0.65912298	309	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		21.393	21.393	2	0.00038184	15841	DP1141_19	117.71	82.554			2724200	999	309	937	1739	2483	2483		1	9606
MFVGGLSWDTSK	Unmodified	1326.6278	0.62782285	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	4	0				1		20.631	20.631	2	0.00021	14832	DP1141_19	118.03	63.967			33307000	1000	408	938	1740	2484	2484		1	9606
MFVGGLSWDTSK	Oxidation (M)	1342.6227	0.62273747	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	1	0	4	0				1		19.658	19.658	2	9.2926E-67	13346	DP1141_19	185.61	132.12			0	1001	408	938	1741	2485	2485	375	1	9606
MFVGGLSWDTSKK	Oxidation (M)	1470.7177	0.71770049	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	1	1	4.33	0.471				2	1	18.312	18.312	2;3	0.0018788	11373	DP1141_19	126.12	75.969			457950000	1002	408	939	1742;1743;1744	2486;2487;2488;2489	2488	375	4	9606
MFVGGLSWDTSKK	Unmodified	1454.7228	0.72278587	408	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	1	4	0				2		19.128	19.128	2;3	1.4275000000000002E-41	12600	DP1141_19	178.84	110.83			236050000	1003	408	939	1745;1746	2490;2491	2490		1	9606
MGAGMGFGLER	2 Oxidation (M)	1156.5005	0.50051385	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	4	0				1		16.859	16.859	2	0.036478	8989	DP1141_19	47.894	6.4672			17901000	1004	194	940	1747	2492	2492	189;190	1	9606
MGGFQRGKYGTMAEGR	Acetyl (Protein N-term);2 Oxidation (M)	1818.8141	0.81413685	399	Q96F15	GIMAP5	GTPase IMAP family member 5	yes	yes	1	2	2	5	0					1	25.586	25.586	2	0.035352	22687	DP1141_20	41.242	8.3827			0	1005	399	941	1748	2493	2493	359;360	1	9606
MGGMVSFR	Oxidation (M)	899.39934	0.39934324	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					16.228	16.228	2	0.026546	7620	DP1141_16	99.375	56.9			349340000	1006	302	942	1749	2494	2494	282	0	9606
MGPAMGPALGAGIER	2 Oxidation (M)	1458.6959	0.69591919	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			16.934	16.934	2	7.4434E-05	8836	DP1141_18	114.71	85.754			94988000	1007	194	943	1750	2495;2496;2497	2497	191;192	3	9606
MGPLGLDHMASSIER	2 Oxidation (M)	1644.76	0.75997601	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	4	0				1		16.604	16.604	3	0.030654	8520	DP1141_19	47.242	27.638			24866000	1008	194	944	1751	2498	2498	193;194	1	9606
MHLYLGAAK	Oxidation (M)	1018.527	0.52698659	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					15.141	15.141	2	3.753E-05	6220	DP1141_16	123.99	79.872			11436000	1009	302;39	945	1752	2499	2499	35	1	9606
MHLYLGAAK	Unmodified	1002.5321	0.53207197	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					16.706	16.706	2	7.8086E-09	8501	DP1141_16	139.92	94.237			852700000	1010	302;39	945	1753	2500;2501	2500		2	9606
MIAGQVLDINLAAEPK	Oxidation (M)	1697.9022	0.9022068	95	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		20.13	20.13	2	0.0046021	14159	DP1141_19	101.38	53.192			285970000	1011	95	946	1754	2502;2503	2503	76	2	9606
MIAGQVLDINLAAEPK	Unmodified	1681.9073	0.90729217	95	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		20.832	20.832	2	3.7307E-10	15117	DP1141_19	149.69	94.609			44647000	1012	95	946	1755	2504	2504		1	9606
MIFDVESMK	2 Oxidation (M)	1130.4988	0.49878251	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	0	2	0		1				17.306	17.306	2	0.013484	9735	DP1141_17	79.474	22.927			12725000	1013	101	947	1756	2505	2505	95;96	1	9606
MIFDVESMKK	2 Oxidation (M)	1258.5937	0.59374553	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	1	1.8	0.748	2	2	1			15.891	15.891	2;3	0.0011741	7326	DP1141_17	112.11	58.139			369980000	1014	101	948	1757;1758;1759;1760;1761	2506;2507;2508;2509;2510;2511;2512;2513	2511	95;96	7	9606
MIFDVESMKK	Oxidation (M)	1242.5988	0.59883091	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2	0		2				17.134	17.134	2;3	1.1142E-30	9748	DP1141_17	172.23	98.984			91941000	1015	101	948	1762;1763	2514;2515	2514	95;96	1	9606
MIFDVESMKK	Unmodified	1226.6039	0.60391628	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		1				18.221	18.221	2	0.0064495	11237	DP1141_17	107.57	29.652			5578200	1016	101	948	1764	2516	2516		1	9606
MKETAENYLGHTAK	Oxidation (M)	1607.7614	0.76135622	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			14.425	14.425	3	0.017105	4891	DP1141_18	83.823	51.256			0	1017	159	949	1765	2517	2517	167	1	9606
MKETAENYLGHTAK	Unmodified	1591.7664	0.7664416	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	3	0			1			15.003	15.003	3	0.025575	5511	DP1141_18	79.337	33.055			92239000	1018	159	949	1766	2518	2518		0	9606
MKMMLVR	Acetyl (Protein N-term);2 Oxidation (M)	981.48096	0.48096438	373	Q8IXL6	FAM20C	Extracellular serine/threonine protein kinase FAM20C	yes	yes	1	2	1	2	0		1				16.181	16.181	2	0.035838	7689	DP1141_17	44.611	10.438			0	1019	373	950	1767	2519	2519	334;335;336	1	9606
MKRHEMVAK	Acetyl (Protein N-term);Oxidation (M)	1186.5951	0.59508293	276	Q03924	ZNF117	Zinc finger protein 117	yes	yes	1	1	2	5	0					1	15.484	15.484	2	0.02386	7027	DP1141_20	68.224	25.354			68867000	1020	276	951	1768	2520	2520	247	1	9606
MKVELCSFSGYK	Oxidation (M)	1463.6789	0.67887214	259	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	1	5	0					1	17.27	17.27	2	0.0024797	10130	DP1141_20	134.98	82.81			57428000	1021	259	952	1769	2521	2521	229	1	9606
MKVQDQDLPNTPHSK	Oxidation (M)	1752.8465	0.84648283	290	Q08554	DSC1	Desmocollin-1	yes	yes	0	1	1	1.5	0.5	1	1				13.773	13.773	3	0.011352	3818	DP1141_16	84.62	64.367			3832100	1022	290	953	1770;1771	2522;2523;2524	2522	253	3	9606
MLDMGFEPQIR	2 Oxidation (M)	1367.6214	0.62135726	38;122;393	O00571;O15523;P17844;Q92841	DDX3X;DDX3Y;DDX5;DDX17	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	2	0	3	0			1			18.334	18.334	2	1.7065E-05	10916	DP1141_18	122.96	82.08			14903000	1023	38;122;393	954	1772	2525	2525	28;29	1	9606
MLQEDELRDAVLLVFANKQDMPNAMPVSELTDK	3 Oxidation (M)	3807.8369	0.83691229	262	P84085	ARF5	ADP-ribosylation factor 5	yes	yes	0	3	2	5	0					1	20.11	20.11	5	0.0026638	15260	DP1141_20	43.992	20.216			292720000	1024	262	955	1773	2526	2526	230;231;232	1	9606
MLTDHMPDILMR	3 Oxidation (M)	1519.6833	0.68330559	378	Q8NCG7	DAGLB	Sn1-specific diacylglycerol lipase beta	yes	yes	0	3	0	1	0	1					17.94	17.94	2	0.030197	10721	DP1141_16	44.98	8.5559			13648000	1025	378	956	1774	2527	2527	339;340;341	1	9606
MMGESALCMEALQFLAK	Oxidation (M)	1944.8817	0.8817474	469				yes	yes	0	1	0	4	0				1		19.29	19.29	2	0.02795	12908	DP1141_19	83.081	59.613	+		13797000	1026	469	957	1775	2528	2528	426;427	1	9606
MMGESALCMEALQFLAK	Unmodified	1928.8868	0.88683278	469				yes	yes	0	0	0	4.5	0.5				1	1	20.488	20.488	2	0.015926	14694	DP1141_19	86.014	44.31	+		18662000	1027	469	957	1776;1777	2529;2530	2529		2	9606
MMGHRPVLVLSQNTK	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	185	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	2	1	3	0			1			16.307	16.307	3	0.00085084	7721	DP1141_18	102.5	78.974			39277000	1028	185	958	1778	2531	2531	181;182	1	9606
MMLGTEGGEGFVVK	Acetyl (Protein N-term)	1495.7051	0.70508689	147	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	0	0	3	0			1			23.014	23.014	2	9.9023E-05	18102	DP1141_18	132.25	76.207			0	1029	147	959	1779	2532	2532		1	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	2 Oxidation (M)	2881.2146	0.21458552	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.734	20.734	3	5.301400000000001E-25	14871	DP1141_16	152.51	142.65			142010000	1030	302	960	1780	2533;2534	2533	283;284	2	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	Unmodified	2849.2248	0.22475628	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.633	21.633	3	0.029808	16271	DP1141_16	34.817	14.074			81176000	1031	302	960	1781	2535	2535		1	9606
MNDTVTIR	Acetyl (Protein N-term);Oxidation (M)	1006.4753	0.47534495	237	P62847	RPS24	40S ribosomal protein S24	yes	yes	1	1	0	5	0					1	16.89	16.89	2	0.0072004	9430	DP1141_20	113.7	74.733			0	1032	237	961	1782	2536	2536	217	1	9606
MNGQLDLSGK	Acetyl (Protein N-term);Oxidation (M)	1119.523	0.52302343	390	Q92734	TFG	Protein TFG	yes	yes	1	1	0	3	0			1			17.8	17.8	2	0.0028608	10203	DP1141_18	81.95	57.431			12478000	1033	390	962	1783	2537	2537	354	0	9606
MNSMNPMK	Acetyl (Protein N-term);Oxidation (M)	1009.4031	0.40310799	380	Q8NF64	ZMIZ2	Zinc finger MIZ domain-containing protein 2	yes	yes	1	1	0	2	0		1				17.506	17.506	2	0.03453	9798	DP1141_17	47.849	13.596			71456000	1034	380	963	1784	2538	2538	345	1	9606
MPIIPFLL	Unmodified	942.56125	0.56124683	436	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	1	0	1					27.096	27.096	1	1.1211E-06	23833	DP1141_16	128.65	57.736			2113500	1035	436	964	1785	2539	2539		1	9606
MPLGHIMRLDLEK	Acetyl (Protein N-term);Oxidation (M)	1609.832	0.83201874	422	Q9H6Z9	EGLN3	Egl nine homolog 3	yes	yes	1	1	1	4	0				1		21.991	21.991	2	0.036234	16791	DP1141_19	43.651	9.5643			0	1036	422	965	1786	2540	2540	391	1	9606
MPLTGVGPGSCRRQIIR	Acetyl (Protein N-term);Oxidation (M)	1955.0193	0.019319014	426	Q9HC57	WFDC1	WAP four-disulfide core domain protein 1	yes	yes	1	1	2	4	0				1		22.965	22.965	2	0.0084301	18272	DP1141_19	88.155	26.675			0	1037	426	966	1787	2541	2541	392	1	9606
MPTVSVKRDLLFQALGR	Acetyl (Protein N-term);Oxidation (M)	1988.0877	0.087716155	432	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	1	1	2	2	0		1				22.596	22.596	2	0.034859	17727	DP1141_17	51.218	8.5891			0	1038	432	967	1788	2542	2542	400	1	9606
MQSLDKDIVALMVR	Oxidation (M)	1633.8531	0.85314811	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	1	2	0		1				20.943	20.943	2	2.3783999999999997E-21	15218	DP1141_17	153.74	79.852			0	1039	110	968	1789	2543	2543	112	1	9606
MREIVHLQAGQCGNQIGAK	Unmodified	2109.0572	0.057161084	253	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	1	3	0			2			16.217	16.217	3;4	0.029396	7805	DP1141_18	48.555	0			181150000	1040	253	969	1790;1791	2544;2545	2544		2	9606
MRPGVACSVSQAQK	Unmodified	1517.7443	0.74426637	149	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	1	5	0					1	14.328	14.328	3	0.020394	5303	DP1141_20	85.837	45.771			4721400	1041	149	970	1792	2546;2547	2547		2	9606
MSATFIGNSTAIQELFK	Oxidation (M)	1872.9291	0.92914983	253;308	P68371;Q13885;Q9BVA1	TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3.5	0.5			1	1		22.298	22.298	2	0	17228	DP1141_19	277.11	51.483			118820000	1042	253;308	971	1793;1794	2548;2549;2550;2551	2550	226	4	9606
MSDKSELKAELER	Acetyl (Protein N-term);Oxidation (M)	1592.7716	0.77158655	305	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	1	1	2	2	0		1				15.054	15.054	3	0.034454	5994	DP1141_17	41.401	7.4005			45590000	1043	305	972	1795	2552	2552	298	1	9606
MSDQDHSMDEMTAVVKIEK	Acetyl (Protein N-term);2 Oxidation (M)	2266.9756	0.97558403	96	P08047	SP1	Transcription factor Sp1	yes	yes	1	2	1	3	0			1			26.565	26.565	3	0.034631	22928	DP1141_18	41.554	21.968			0	1044	96	973	1796	2553	2553	77;78	1	9606
MSFSSNLNHYGMTHVASVSDVLLDNSFTPPCQR	2 Oxidation (M)	3742.6814	0.6814147	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.335	20.335	4	3.0424E-10	14360	DP1141_16	98.632	84.15			99391000	1045	302	974	1797	2554;2555	2555	285;286	2	9606
MSLDFYVSMVVYDGSTK	Oxidation (M)	1956.8849	0.88490175	465				yes	yes	0	1	0	4	0				1		14.152	14.152	3	0.024003	4572	DP1141_19	58.079	29.123	+		110700000	1046	465	975	1798	2556	2556	424	1	9606
MSLVMPAMAPNETLSGR	3 Oxidation (M)	1851.8529	0.85289012	411	Q99941	ATF6B	Cyclic AMP-dependent transcription factor ATF-6 beta;Processed cyclic AMP-dependent transcription factor ATF-6 beta	yes	yes	0	3	0	2	0		1				22.155	22.155	2	0.030721	17193	DP1141_17	41.383	9.708			2076600	1047	411	976	1799	2557	2557	378;379;380	1	9606
MSNSNTTQETLEIMK	2 Oxidation (M)	1757.7812	0.78116496	455	Q9Y2K5	R3HDM2	R3H domain-containing protein 2	yes	yes	0	2	0	5	0					1	25.549	25.549	2	0.022445	22695	DP1141_20	52.693	20.935			1281400	1048	455	977	1800	2558	2558	418;419	1	9606
MSVDPLSSKALKIK	Acetyl (Protein N-term);Oxidation (M)	1573.8749	0.87492941	447	Q9ULX9	MAFF	Transcription factor MafF	yes	yes	1	1	2	2	0		1				21.416	21.416	2	0.03176	15915	DP1141_17	47.559	15.57			15296000	1049	447	978	1801	2559	2559	412	1	9606
MSVQPTVSLGGFEITPPVVLR	Oxidation (M)	2242.2031	0.20313984	90	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4	0				1		22.732	22.732	2	2.047E-208	17953	DP1141_19	236.05	197.87			15808000	1050	90	979	1802	2560	2560	67	1	9606
MTLDDFR	Oxidation (M)	912.40112	0.40111738	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	1.75	0.829	2	1	1			16.999	16.999	1;2	1.8598999999999998E-46	9018	DP1141_16	180.49	132.58		+	1321200000	1051	27	980	1803;1804;1805;1806	2561;2562;2563;2564;2565	2562	18	5	9606
MTVEFEECVKDSPR	Acetyl (Protein N-term);Oxidation (M)	1783.7757	0.77568565	402	Q96P50	ACAP3	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3	yes	yes	1	1	1	2	0		1				15.545	15.545	2	0.035709	6653	DP1141_17	46.352	11.579			0	1052	402	981	1807	2566	2566	363	1	9606
MVAAVACAQVPK	Unmodified	1243.6417	0.64169877	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			16.699	16.699	2	4.9867E-07	8407	DP1141_18	147.29	105			558700000	1053	427	982	1808;1809	2567;2568;2569;2570	2569		4	9606
MVAAVACAQVPK	Oxidation (M)	1259.6366	0.6366134	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			15.824	15.824	2	1.0425E-09	7012	DP1141_18	154.12	70.471			1188400000	1054	427	982	1810;1811	2571;2572	2572	394	1	9606
MVDPEKPQLGMIDR	Oxidation (M)	1643.8011	0.80111254	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	1	2	0		1				16.909	16.909	3	0.023969	8933	DP1141_17	77.776	46.561			64552000	1055	101	983	1812	2573	2573	88;89	1	9606
MVLLESEQFLTELTRLFQKCR	Acetyl (Protein N-term);Oxidation (M)	2698.3822	0.3822432	156	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	1	1	2	5	0					1	21.728	21.728	2	0.024771	17028	DP1141_20	50.563	17.829			0	1056	156	984	1813	2574	2574	163	1	9606
MVPAGMGAGLER	2 Oxidation (M)	1219.5689	0.56892776	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			14.818	14.818	2	0.0096092	5521	DP1141_18	72.848	42.593			30907000	1057	194	985	1814	2575;2576;2577	2576	195;196	3	9606
MVQEAEKYKAEDEVQR	Oxidation (M)	1967.9259	0.92585536	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	1	2	3	1.41	1		2		1	14.381	14.381	3;4	1.1558E-10	4892	DP1141_18	153.41	109.72			112690000	1058	105	986	1815;1816;1817;1818	2578;2579;2580;2581	2579	100	3	9606
MVSALQQQQQQQQR	Oxidation (M)	1715.8373	0.83731513	451	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	1	0	2.33	0.471		2	1			14.402	14.402	2	2.1704E-299	4791	DP1141_17	255.19	211.56			0	1059	451	987	1819;1820;1821	2582;2583;2584	2582	415	3	9606
MYSYPAR	Unmodified	886.40072	0.40072345	95	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		15.682	15.682	2	0.03675	7001	DP1141_19	105.27	56.508			28893000	1060	95	988	1822	2585	2585		1	9606
NAHSATTWSGQYVGGAEAR	Unmodified	1961.898	0.89800113	33	CON__Streptavidin			yes	yes	0	0	0	4.09	1.5	2			2	7	20.574	20.574	2;3;4	0	8692	DP1141_20	347.65	324.5		+	29850000000	1061	33	989	1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833	2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608	2598		23	
NALESYAFNMK	Unmodified	1286.5965	0.59652272	105	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	0	0	3	0			1			19.634	19.634	2	0.023146	13178	DP1141_18	92.062	55.616			138560000	1062	105	990	1834	2609	2609		1	9606
NASMNTQHGTATEVAVETTTPK	Oxidation (M)	2303.07	0.069953419	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	1	0	2	0		1				15.254	15.254	3	0.0019572	6284	DP1141_17	83.115	61.104			33812000	1063	441	991	1835	2610	2610	408	1	9606
NAVITVPAYFNDSQR	Unmodified	1693.8424	0.84238373	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.934	19.934	2	0.00049063	13459	DP1141_18	164.13	99.476			78084000	1064	159	992	1836	2611	2611		1	9606
NCAVEFNFGQR	Unmodified	1340.5932	0.59316868	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	3	0			1			18.934	18.934	2	1.426E-17	12060	DP1141_18	174.02	153.05			38546000	1065	417	993	1837	2612	2612		0	9606
NCIVLIDSTPYR	Unmodified	1449.7286	0.72859953	219	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.466	19.466	2	0.00049929	13583	DP1141_20	148.91	97.152			9077500	1066	219	994	1838	2613	2613		1	9606
NCLTNFHGMDLTR	Oxidation (M)	1593.7028	0.70279548	211	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				2		17.034	17.034	2;3	6.1249E-09	9198	DP1141_19	152.64	89.454			89181000	1067	211	995	1839;1840	2614;2615	2614	204	2	9606
NDEELNKLLGGVTIAQGGVLPNIQAVLLPK	Unmodified	3112.7496	0.74959955	117	P16104;Q96QV6;Q8IUE6	H2AFX;HIST1H2AA;HIST2H2AB	Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B	yes	no	0	0	1	5	0					1	23.986	23.986	3	8.224199999999999E-72	20419	DP1141_20	171.25	154.28			13109000	1068	117	996	1841	2616	2616		1	9606
NDEELNKLLGK	Unmodified	1271.6721	0.67213051	103;338	Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	1	5	0					14	27.488	27.488	2;3	6.377700000000001E-29	11707	DP1141_20	169.76	92.443			9758300000	1069	103;338	997	1842;1843;1844;1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855	2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2631	2618		15	9606
NDEELNKLLGR	Unmodified	1299.6783	0.67827852	77	Q93077;Q7L7L0;P04908	HIST1H2AC;HIST3H2A;HIST1H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E	yes	no	0	0	1	5	0					2	18.573	18.573	2;3	3.6473E-153	12179	DP1141_20	232.72	155.89			2428800000	1070	77	998	1856;1857	2632;2633;2634;2635	2632		4	9606
NDLSPASSGNAVYDFFIGR	Unmodified	2028.9541	0.95411902	319	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					23.192	23.192	2	0	18483	DP1141_16	265.12	208.98			11690000	1071	319	999	1858	2636;2637	2636		2	9606
NFDLTAIPCANHK	Unmodified	1499.7191	0.71909747	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.434	18.434	2	0.00040117	11307	DP1141_16	151.83	117.74			267430000	1072	302	1000	1859	2638	2638		0	9606
NFILDQTNVSAAAQR	Unmodified	1646.8376	0.8376327	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				19.104	19.104	2	0.0075421	12500	DP1141_17	89.629	45.018			45415000	1073	267	1001	1860	2639	2639		1	9606
NGIAFMGPPSQAMWALGDK	Unmodified	1989.9441	0.94408839	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.388	22.388	2	0.0046923	17381	DP1141_16	104.95	73.112			14778000	1074	302	1002	1861	2640;2641	2640		2	9606
NGPLEVAGAAVSAGHGLPAK	Unmodified	1814.9639	0.96389585	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	3.67	0.471			1	2		18.33	18.33	2;3	3.7738000000000002E-56	11060	DP1141_19	177.07	158.09			484920000	1075	56	1003	1862;1863;1864	2642;2643;2644;2645;2646;2647;2648	2644		7	9606
NGQDLGVAFK	Unmodified	1047.5349	0.53490874	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				17.506	17.506	2	0.013327	9858	DP1141_17	128.36	88.294			49990000	1076	267	1004	1865	2649	2649		0	9606
NGQPESEDKYGTTPPQLDADSSYFLYSK	Unmodified	3136.4149	0.41491935	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	1	3.5	1.12		1	1	1	1	19.826	19.826	3	3.4554E-21	14257	DP1141_20	132.77	110.05		+	742010000	1077	11;10	1005	1866;1867;1868;1869	2650;2651;2652;2653;2654;2655	2655		6	
NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK	Oxidation (M)	3367.6314	0.63141126	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	2	1	0	3					17.037	17.037	3;4;5	4.4354E-173	9041	DP1141_16	216.67	178.74		+	280720000	1078	27	1006	1870;1871;1872	2656;2657;2658	2656	19	3	9606
NHPGLLLMDTTFR	Unmodified	1513.7711	0.77113304	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				20.008	20.008	3	6.177700000000001E-54	13962	DP1141_17	152.4	77.437			32312000	1079	112	1007	1873	2659	2659		1	9606
NHPGLLLMDTTFR	Oxidation (M)	1529.766	0.76604767	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				18.705	18.705	3	0.01099	11811	DP1141_17	124.48	81.856			0	1080	112	1007	1874	2660	2660	124	1	9606
NIETIINTFHQYSVK	Unmodified	1805.9312	0.93119874	89	P06702	S100A9	Protein S100-A9	yes	yes	0	0	0	5	0					2	21.396	21.396	2;3	9.1887E-162	16613	DP1141_20	228.62	156.28			177630000	1081	89	1008	1875;1876	2661;2662	2662		2	9606
NIPGITLLNVSK	Unmodified	1267.75	0.7499869	154	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			20.62	20.62	2	0.033661	14318	DP1141_18	82.494	55.447			164750000	1082	154	1009	1877	2663	2663		1	9606
NITYLPAGQSVLLQLPQ	Unmodified	1854.0251	0.025099124	151	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		23.473	23.473	2	1.3291E-144	19080	DP1141_19	221.6	118.34			28974000	1083	151	1010	1878	2664;2665	2664		2	9606
NIVEAAAVR	Unmodified	941.52943	0.52942943	239	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	5	0					1	16.145	16.145	2	0.00026526	8112	DP1141_20	123.35	56.185			52894000	1084	239	1011	1879	2666	2666		0	9606
NIYVLQELDNPGAK	Unmodified	1572.8148	0.814772	114	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	3	0			1			20.334	20.334	2	3.0233E-05	14172	DP1141_18	154.66	97.31			4859000	1085	114	1012	1880	2667	2667		0	9606
NKLNDLEDALQQAK	Unmodified	1598.8264	0.82639932	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1.75	0.829	2	1	1			19.352	19.352	2;3	0	12738	DP1141_16	364.95	270.54		+	336710000	1086	74	1013	1881;1882;1883;1884	2668;2669;2670;2671;2672;2673;2674	2668		6	9606
NKLNDLEDALQQAKEDLAR	Unmodified	2183.1182	0.11822424	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	2.67	1.7	1	1			1	21.48	21.48	3	2.6661E-225	15977	DP1141_16	242.67	164.42		+	58295000	1087	74	1014	1885;1886;1887	2675;2676;2677;2678	2676		4	9606
NKLNDLEEALQQAK	Unmodified	1612.842	0.84204938	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2.5	1.5	1			1		19.653	19.653	2	3.6296E-41	13163	DP1141_16	167.2	122.77		+	0	1088	28	1015	1888;1889	2679;2680	2679		2	9606
NKYEDEINKR	Unmodified	1307.647	0.64697839	74;26;73	P04264;CON__P04264;CON__H-INV:HIT000016045;P04259;CON__P13647;P13647	KRT1;KRT6B;KRT5	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5	no	no	0	0	2	1.33	0.471	2	1				14.225	14.225	3	1.5184999999999998E-40	4730	DP1141_17	167.93	133.85		+	0	1089	74;73;26	1016	1890;1891;1892	2681;2682;2683	2683		3	9606
NLDCPELISEFMK	Oxidation (M)	1610.732	0.73202992	172	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	1	0	5	0					1	20.408	20.408	2	0.027274	15056	DP1141_20	91.123	60.299			12285000	1090	172	1017	1893	2684	2684	171	1	9606
NLDIERPTYTNLNR	Unmodified	1717.8747	0.87474649	251;413;252	P68363;P68366;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	1	3.33	0.471			2	1		17.631	17.631	2;3	3.0122E-99	10031	DP1141_18	210.44	143.23			2141699999.9999998	1091	251;252;413	1018	1894;1895;1896	2685;2686;2687;2688	2687		4	9606
NLDLDSIIAEVK	Unmodified	1328.7187	0.71874635	28;26;73	P04259;CON__P13647;P13647;CON__O95678;O95678;CON__P35908v2;CON__P35908;P35908	KRT6B;KRT5;KRT75;KRT2	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	2	0.816	1	1	1			22.568	22.568	2	3.2722E-21	17401	DP1141_18	163.66	98.951		+	215410000	1092	73;26;28	1019	1897;1898;1899	2689;2690;2691;2692;2693	2692		5	9606
NLLVTMLIDQLCGR	Oxidation (M)	1660.864	0.86404715	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					24.089	24.089	2	2.3875E-31	19710	DP1141_16	174.57	110.47			20073000	1093	302	1020	1900	2694;2695	2694	274	2	9606
NLTPQIDGSTLR	Unmodified	1313.6939	0.69392858	429	Q9HCJ0;Q8NDV7	TNRC6C;TNRC6A	Trinucleotide repeat-containing gene 6C protein;Trinucleotide repeat-containing gene 6A protein	yes	no	0	0	0	2.5	0.5		1	1			17.869	17.869	2	0.0048056	10390	DP1141_18	103.7	50.611			32603000	1094	429	1021	1901;1902	2696;2697	2697		2	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	Oxidation (M)	2204.893	0.89299211	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4.5	0.5				1	1	16.517	16.517	2	0	8329	DP1141_19	311.95	272.56			434560000	1095	134	1022	1903;1904	2698;2699;2700;2701;2702;2703;2704	2698	140	7	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	Unmodified	2188.8981	0.89807748	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.328	17.328	2	1.3181E-170	9765	DP1141_19	268.08	246.03			275060000	1096	134	1022	1905	2705	2705		1	9606
NMQDMVEDYR	2 Oxidation (M)	1331.5122	0.51220074	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	3	1.41	1	1	1	1	1	15.382	15.382	2	4.0034E-08	6218	DP1141_16	131.62	114.15		+	492230000	1097	74	1023	1906;1907;1908;1909;1910	2706;2707;2708;2709;2710;2711;2712;2713	2706	53;54	8	9606
NMQDMVEDYR	Oxidation (M)	1315.5173	0.51728612	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	2	1	1		1			16.747	16.747	2	2.0844E-11	8230	DP1141_16	153.05	100.79		+	148780000	1098	74	1023	1911;1912	2714;2715	2714	53;54	2	9606
NMQDMVEDYRNK	2 Oxidation (M)	1573.6501	0.65009121	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	1	0	1					14.302	14.302	3	0.031382	4755	DP1141_16	50.786	34.853		+	3975900	1099	74	1024	1913	2716	2716	53;54	1	9606
NNEMEVSANIHDGATDDAEDDDDDDGLIQKR	Unmodified	3416.4182	0.41824318	452	Q9UPS8	ANKRD26	Ankyrin repeat domain-containing protein 26	yes	yes	0	0	1	1	0	1					33.312	33.312	7	0.036044	31880	DP1141_16	3.9859	2.1973			3183500	1100	452	1025	1914	2717	2717		1	9606
NNTLMGKPTEGALIALAMK	Oxidation (M)	1988.0435	0.043468079	265	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	1	1	1	0	1					21.385	21.385	3	0.036704	15749	DP1141_16	50.787	32.316			0	1101	265	1026	1915	2718	2718	233	1	9606
NPPGEDCEPLVGSPKR	Unmodified	1750.8308	0.83083277	464	Q9Y6Q6	TNFRSF11A	Tumor necrosis factor receptor superfamily member 11A	yes	yes	0	0	1	4.33	0.471				2	1	13.791	13.791	3;4	0.012277	4379	DP1141_20	52.966	29.981			173530000	1102	464	1027	1916;1917;1918	2719;2720;2721;2722	2721		4	9606
NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK	2 Oxidation (M)	4488.1914	0.19142932	113	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	2	0	3	0			1			17.533	17.533	4	8.8351E-20	9882	DP1141_18	67.351	52.653			26108000	1103	113	1028	1919	2723	2723	128;129	1	9606
NPVTIFSLATNEMWR	Oxidation (M)	1793.8771	0.87705468	279	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	1	0	5	0					1	22.495	22.495	2	0.00081211	18181	DP1141_20	111.52	68.549			6100100	1104	279	1029	1920	2724	2724	249	1	9606
NPVTIFSLATNEMWR	Unmodified	1777.8821	0.88214006	279	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	5	0					1	23.727	23.727	2	0.01925	20086	DP1141_20	79.283	41.727			4106400	1105	279	1029	1921	2725	2725		1	9606
NQLVTPEPTSR	Unmodified	1240.6412	0.64116473	316	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	2	0		1				15.558	15.558	2	0.0068862	6565	DP1141_17	104.01	61.676			26879000	1106	316	1030	1922	2726	2726		1	9606
NQVALNPQNTVFDAK	Unmodified	1657.8424	0.84238373	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	0	4	0.816			1	1	1	18.514	18.514	2	1.3824E-139	11351	DP1141_18	228.83	185.41			1219400000	1107	105	1031	1923;1924;1925	2727;2728;2729;2730;2731;2732	2728		6	9606
NQVALNPQNTVFDAKR	Unmodified	1813.9435	0.94349476	105	P0DMV8;P0DMV9	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	yes	no	0	0	1	4	1			1		1	17.441	17.441	3	0.00093771	10430	DP1141_20	104.94	73.163			69849000	1108	105	1032	1926;1927	2733;2734	2734		2	9606
NQVAMNPTNTVFDAK	Oxidation (M)	1664.7828	0.78281994	108	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			17.133	17.133	2	7.308E-101	9150	DP1141_18	207.88	159.79			46106000	1109	108	1033	1928	2735;2736	2735	103	2	9606
NREEEWDPEYTPK	Unmodified	1691.7427	0.74272927	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				17.106	17.106	2	9.4024E-30	9285	DP1141_17	172.21	102.94			36547000	1110	457	1034	1929	2737	2737		1	9606
NREELGFRPEYSASQLK	Unmodified	2023.0123	0.012302606	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0		1				17.293	17.293	3	0.031639	9525	DP1141_17	125.33	81.032			0	1111	101	1035	1930	2738	2738		1	9606
NRPFMGSISQQNIR	Oxidation (M)	1662.826	0.82602216	434	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	yes	yes	0	1	1	4	0				1		15.924	15.924	3	0.036503	7458	DP1141_19	63.037	27.28			5001200	1112	434	1036	1931	2739	2739	401	0	9606
NRPPFGQGYTQPGPGYR	Unmodified	1890.9125	0.91252898	390	Q92734	TFG	Protein TFG	yes	yes	0	0	1	3.33	0.471			2	1		16.813	16.813	2;3	1.1965E-10	8740	DP1141_18	147.83	112.1			385280000	1113	390	1037	1932;1933;1934	2740;2741;2742;2743	2740		4	9606
NSDEADLVPAK	Unmodified	1157.5564	0.55643205	261	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	0	5	0					1	15.753	15.753	2	1.32E-80	7523	DP1141_20	202.96	138.76			169560000	1114	261	1038	1935	2744;2745	2744		2	9606
NSFMVIPK	Oxidation (M)	950.48954	0.48953845	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	1	0	2	0		1				17.206	17.206	2	0.0010211	9399	DP1141_17	122.18	64.999			259990000	1115	343	1039	1936	2746	2746	318	1	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	2 Oxidation (M)	3117.3366	0.33655115	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	3	0			1			18.734	18.734	3	4.224E-05	11613	DP1141_18	64.383	54.324			40950000	1116	405	1040	1937	2747	2747	368;369	1	9606
NSMLQEEIAMLR	2 Oxidation (M)	1465.6905	0.69049946	452	Q9UPS8	ANKRD26	Ankyrin repeat domain-containing protein 26	yes	yes	0	2	0	3	0			1			14.351	14.351	3	0.026309	4731	DP1141_18	58.132	32.015			13303000	1117	452	1041	1938	2748	2748	416;417	1	9606
NSVSNFLHSLER	Unmodified	1401.7001	0.70007659	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					20.435	20.435	2;3	9.242199999999999E-135	14353	DP1141_16	211.63	183.06			284100000	1118	302	1042	1939;1940	2749;2750;2751	2751		3	9606
NSVTPDMMEEMYKK	3 Oxidation (M)	1749.726	0.72595827	174	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	3	1	1	0	1					13.982	13.982	3	0.0030372	4268	DP1141_16	91.712	82.799			4906200	1119	174	1043	1941	2752	2752	173;174;175	1	9606
NSWQEGDTYTCVVMHEALHNHYTQK	Oxidation (M)	3063.324	0.32395305	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	1	0	3.75	0.968		1	2	3	2	17.931	17.931	3;4;5	4.2313999999999996E-19	10457	DP1141_18	142.54	121.87		+	824430000	1120	11;10	1044	1942;1943;1944;1945;1946;1947;1948;1949	2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765	2757	3	13	
NSWQEGDTYTCVVMHEALHNHYTQK	Unmodified	3047.329	0.32903843	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	0	4.75	0.433				1	3	19.192	19.192	3;4;5	2.875E-24	13242	DP1141_20	150.95	120.72		+	262600000	1121	11;10	1044	1950;1951;1952;1953	2766;2767;2768;2769;2770;2771;2772	2771		7	
NTKQEIAEINR	Unmodified	1314.6892	0.68917755	73	P04259	KRT6B	Keratin, type II cytoskeletal 6B	no	no	0	0	1	1	0	1					14.744	14.744	3	0.033156	5363	DP1141_16	87.641	46.56			5523400	1122	73	1045	1954	2773	2773		1	9606
NVFNALIR	Unmodified	945.5396	0.53960019	274	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	1	0	1					19.868	19.868	2	0.00015092	13681	DP1141_16	142.11	97.138			6561500	1123	274	1046	1955	2774	2774		0	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	Unmodified	3141.4195	0.41950423	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				13.562	13.562	5	0.0044363	3723	DP1141_17	42.828	26.162			1776600	1124	173	1047	1956	2775;2776	2775		2	9606
NVMSAFGLTDDQVSGPPSAPAEDR	Oxidation (M)	2476.1176	0.11763189	390	Q92734	TFG	Protein TFG	yes	yes	0	1	0	3	0			2			19.34	19.34	2;3	0	12718	DP1141_18	422.56	393.35			75815000	1125	390	1048	1957;1958	2777;2778;2779;2780	2778	355	4	9606
NVMSAFGLTDDQVSGPPSAPAEDR	Unmodified	2460.1227	0.12271727	390	Q92734	TFG	Protein TFG	yes	yes	0	0	0	3	0			2			20.833	20.833	2;3	0	14938	DP1141_18	339.81	278.39			154390000	1126	390	1048	1959;1960	2781;2782;2783;2784;2785	2783		5	9606
NVQDAIADAEQR	Unmodified	1328.6321	0.6320566	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	4	1			1		1	17.724	17.724	2	0.0013871	10913	DP1141_20	127.42	88.856		+	14241000	1127	28	1049	1961;1962	2786;2787	2787		2	9606
NVQDAIADAEQRGEHALK	Unmodified	1963.9712	0.97116607	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2	0		1				19.004	19.004	3	0.0033708	12217	DP1141_17	99.796	72.338		+	18233000	1128	28	1050	1963	2788	2788		1	9606
NVQLQENEIR	Unmodified	1241.6364	0.6364137	155	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	4	0.816			1	1	1	16.328	16.328	2	2.2252E-53	7772	DP1141_18	190.02	141.46			1795999999.9999998	1129	155	1051	1964;1965;1966	2789;2790;2791;2792;2793	2789		5	9606
NVQLTENEIR	Unmodified	1214.6255	0.62551466	218	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		16.704	16.704	2	2.842E-113	8666	DP1141_19	218.48	177.75			1236300000	1130	218	1052	1967	2794	2794		1	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	2 Oxidation (M)	2903.3753	0.37531992	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	2	0	1	0	1					21.434	21.434	2	2.9481E-06	15984	DP1141_16	98.077	73.159		+	18231000	1131	25	1053	1968	2795;2796	2795	12;13	2	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	Oxidation (M)	2887.3804	0.3804053	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	1	0	2					23.056	23.056	2;3	0	18314	DP1141_16	308.29	275.59		+	26567000	1132	25	1053	1969;1970	2797;2798;2799;2800	2800	12;13	4	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	Unmodified	3256.3889	0.38893238	249	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		14.73	14.73	3	0.0013786	5717	DP1141_19	54.56	44.59			72922000	1133	249	1054	1971	2801;2802	2801		2	9606
NYYEQWGK	Unmodified	1086.4771	0.47705951	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.727	17.727	2	1.7025E-13	10405	DP1141_19	145.34	67.601			930760000	1134	134	1055	1972	2803	2803		1	9606
PAPAVGEAEDKENQQATSGPNQPSVR	Unmodified	2676.2739	0.27394961	120	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3	0			1			15.324	15.324	3	4.6732E-17	6386	DP1141_18	139.28	111.71			18851000	1135	120	1056	1973	2804	2804		1	9606
PAPSAQPAPPPHPPSR	Unmodified	1602.8267	0.82667409	406	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	0	2	0		1				14.368	14.368	3	0.012843	4833	DP1141_17	79.652	58.256			1745400	1136	406	1057	1974	2805	2805		1	9606
PASLYQSSIDRSLER	Unmodified	1720.8744	0.87441214	62	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	0	0	1	5	0					1	14.657	14.657	4	0.012088	5846	DP1141_20	67.964	45.109			22794000	1137	62	1058	1975	2806	2806		1	9606
PGASLPPLDLQALEK	Unmodified	1547.8559	0.85590853	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			21.024	21.024	2	2.4837E-10	15362	DP1141_17	153.49	114.93			242710000	1138	112	1059	1976;1977;1978	2807;2808;2809;2810;2811;2812;2813	2809		7	9606
PGCVAELQPR	Unmodified	1125.5601	0.56007764	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.5	0.5		1	1			16.458	16.458	2	4.0267E-11	7686	DP1141_17	149.82	96.06			282090000	1139	343	1060	1979;1980	2814;2815	2814		2	9606
PGFTSLPGSTMTPPPSGPNPYAR	Oxidation (M)	2344.1158	0.1157814	390	Q92734	TFG	Protein TFG	yes	yes	0	1	0	3	0			1			19.034	19.034	3	0.0047899	12177	DP1141_18	59.975	37.965			5291900	1140	390	1061	1981	2816	2816	356	1	9606
PGMLEMLLPGQPEAVAR	2 Oxidation (M)	1839.9223	0.92229031	182	P48637	GSS	Glutathione synthetase	yes	yes	0	2	0	4	0				1		24.581	24.581	2	0.010658	20679	DP1141_19	66.56	13.668			10473000	1141	182	1062	1982	2817	2817	177;178	1	9606
PGSVVPTTLFQGIK	Unmodified	1442.8133	0.81331543	385	Q8TEY7	USP33	Ubiquitin carboxyl-terminal hydrolase 33	yes	yes	0	0	0	1	0	1					17.239	17.239	2	0.013532	9461	DP1141_16	85.807	5.0524			489550000	1142	385	1063	1983	2818	2818		0	9606
PLHPARPGCVAELQPR	Unmodified	1796.9468	0.946806	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	3.5	0.5			1	1		15.898	15.898	4	0.0028567	7022	DP1141_18	89.26	55.472			251040000	1143	343	1064	1984;1985	2819;2820;2821;2822;2823	2820		5	9606
PPANITMFQFFSGIEKKLK	Oxidation (M)	2211.1762	0.17619681	377	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	1	2	3	0			1			16.117	16.117	4	0.032444	7294	DP1141_18	48.423	15.506			10177000	1144	377	1065	1986	2824	2824	338	1	9606
PTSTVLPR	Unmodified	869.49707	0.49706667	342	Q2M3V2	SOWAHA	Ankyrin repeat domain-containing protein SOWAHA	yes	yes	0	0	0	1	0	1					19.534	19.534	1	0.006981	13047	DP1141_16	97.071	6.0854			19477000	1145	342	1066	1987	2825	2825		1	9606
PVQDLIK	Unmodified	811.48035	0.48035398	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				16.783	16.783	2	0.015796	8851	DP1141_17	117.16	61.719			112440000	1146	101	1067	1988	2826	2826		1	9606
QADVFPDRDHFGR	Unmodified	1558.7277	0.72768832	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.33	0.943	1		2			16.599	16.599	2;3	4.6147E-136	8201	DP1141_18	215.72	187.02			523480000	1147	427	1068	1989;1990;1991	2827;2828;2829;2830;2831	2830		5	9606
QAQIEVVPSASALIIK	Unmodified	1665.9665	0.96652161	144	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	20.508	20.508	2	0.00026759	15094	DP1141_20	138.45	101.27			50475000	1148	144	1069	1992	2832	2832		1	9606
QDHPSSMGVYGQESGGFSGPGENR	Oxidation (M)	2495.0408	0.040778555	270	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	1	0	3	0			1			16.318	16.318	3	1.9259E-78	7817	DP1141_18	187.56	151.34			529190000	1149	270	1070	1993	2833;2834	2833	240	2	9606
QDHPSSMGVYGQESGGFSGPGENR	Unmodified	2479.0459	0.045863933	270	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	3	0			1			17.233	17.233	3	0	9206	DP1141_18	272.54	246.13			165410000	1150	270	1070	1994	2835;2836	2835		2	9606
QDTVWDIEEVPRPEGK	Unmodified	1896.9218	0.92175626	451	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	1	2	0		1				19.304	19.304	3	0.0028112	12730	DP1141_17	99.069	71.086			26828000	1151	451	1071	1995	2837	2837		1	9606
QDVPPSPSQVAR	Unmodified	1279.6521	0.65206377	383	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				15.454	15.454	2	0.013971	6299	DP1141_17	94.309	47.919			9607100	1152	383	1072	1996	2838	2838		1	9606
QEGIIFIGPPPSAIR	Unmodified	1593.8879	0.88787736	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	20.983	20.983	2	1.8261E-119	15244	DP1141_16	247.13	200.34			312210000	1153	405	1073	1997;1998;1999;2000;2001	2839;2840;2841;2842;2843;2844;2845;2846;2847;2848;2849	2839		11	9606
QEYEQLIAK	Unmodified	1120.5764	0.57643921	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					17.239	17.239	2	1.0778E-11	9381	DP1141_16	148.99	82.558		+	148930000	1154	27	1074	2002	2850;2851	2851		2	9606
QFSSADEAALKEPIIK	Unmodified	1745.92	0.91996535	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.034	18.034	3	8.3619E-06	10461	DP1141_18	109.1	57.969			1431400000	1155	427	1075	2003	2852	2852		0	9606
QGAPTSFLPPEASQLKPDR	Unmodified	2038.0484	0.048353761	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	1	2.5	0.5		1	1			19.219	19.219	3	5.7812E-38	12009	DP1141_17	170.16	135.74			732880000	1156	417	1076	2004;2005	2853;2854;2855	2853		3	9606
QGDEVSVHYDPMIAK	Oxidation (M)	1703.7825	0.78248559	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	1.67	0.943	2		1			16.702	16.702	2;3	9.1175E-10	8517	DP1141_16	151.79	111.87			722120000	1157	405	1077	2006;2007;2008	2856;2857;2858	2856	370	2	9606
QGGGGGGGSVPGIER	Unmodified	1283.6218	0.62182627	194	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			15.401	15.401	2	0.0018369	6207	DP1141_18	107.37	88.109			27528000	1158	194	1078	2009	2859	2859		1	9606
QGPLHGMLINTPYVTK	Oxidation (M)	1783.9291	0.92909025	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					17.74	17.74	2;3	0.0050419	10334	DP1141_16	103.14	47.329			603820000	1159	302	1079	2010;2011	2860;2861;2862	2861	287	3	9606
QGPLHGMLINTPYVTK	Unmodified	1767.9342	0.93417563	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.935	18.935	2;3	1.3112E-10	12183	DP1141_16	187.62	129			342450000	1160	302	1079	2012;2013	2863;2864;2865;2866	2865		4	9606
QGPQHGMLINTPYVTK	Oxidation (M)	1798.9036	0.90360378	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					16.608	16.608	3	0.029591	8304	DP1141_16	54.811	18.466			23514000	1161	39	1080	2014	2867	2867	36	1	9606
QGTIFLAGPPLVK	Unmodified	1339.7864	0.7863724	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.426	20.426	2	2.9893E-14	14271	DP1141_18	157.78	118.23			513260000	1162	427	1081	2015;2016;2017;2018	2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879	2875		12	9606
QGVDADINGLR	Unmodified	1156.5836	0.58364985	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.67	1.7	1	1			1	17.355	17.355	2	5.2547E-06	10183	DP1141_20	140.83	55.57		+	1376700000	1163	27	1082	2019;2020;2021	2880;2881;2882	2882		3	9606
QHPVPPPAQNQNQVR	Unmodified	1708.8757	0.87574954	334	Q15942	ZYX	Zyxin	yes	yes	0	0	0	3	0			2			13.163	13.163	3	7.4434E-06	2761	DP1141_18	141.38	80.933			15660000	1164	334	1083	2022;2023	2883;2884;2885	2883		3	9606
QIDATFVR	Unmodified	948.50288	0.50288033	329	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	3	0			1			17.208	17.208	2	0.021569	9242	DP1141_18	99.375	47.588			0	1165	329	1084	2024	2886	2886		1	9606
QILDPAASVTGSR	Unmodified	1313.6939	0.69392858	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				17.905	17.905	2	0.030094	10300	DP1141_17	74.611	39.316			21132000	1166	173	1085	2025	2887	2887		1	9606
QISNLQQSISDAEQR	Unmodified	1715.8438	0.84384029	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				18.405	18.405	2	0.0030078	11489	DP1141_17	98.754	58.739		+	277920000	1167	74	1086	2026	2888	2888		1	9606
QISNLQQSISDAEQRGENALK	Unmodified	2328.167	0.16696535	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					20.131	20.131	3	4.8446E-13	13813	DP1141_16	145.43	106.17		+	42640000	1168	74	1087	2027	2889	2889		1	9606
QISNLQQSISDAEQRGENALKDAK	Unmodified	2642.326	0.32598518	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	1	0	1					20.235	20.235	4	8.624999999999999E-40	13933	DP1141_16	163.11	133.48		+	77611000	1169	74	1088	2028	2890	2890		1	9606
QKADEAYLIGR	Unmodified	1262.6619	0.66190017	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.5	0.5		1	1			16.338	16.338	2	1.4053E-90	8027	DP1141_17	223.84	127.93			48565000	1170	112	1089	2029;2030	2891;2892	2891		0	9606
QKALMALCDLMHDPECIYKAMNIGCMENLK	2 Oxidation (M)	3628.6349	0.6348639	440	Q9UHP6	RSPH14	Radial spoke head 14 homolog	yes	yes	0	2	2	5	0					1	17.262	17.262	3	0.02198	10060	DP1141_20	44.164	26.44			0	1171	440	1090	2031	2893	2893	404;405	1	9606
QLASGLLLVTGPLVLNR	Unmodified	1763.0669	0.066904359	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				2		23.135	23.135	2;3	0	18469	DP1141_19	279.62	240.44			18770000	1172	272	1091	2032;2033	2894;2895;2896;2897	2895		4	9606
QLDSIVGER	Unmodified	1015.5298	0.52982336	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	3	2	1				1	16.806	16.806	2	0.00036041	8677	DP1141_16	156.75	58.297		+	72813000	1173	26	1092	2034;2035	2898;2899	2898		1	9606
QLEDWLHSK	Unmodified	1154.572	0.57202253	394	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	2	0		1				18.233	18.233	2	0.00051416	11044	DP1141_17	126.31	65.836			0	1174	394	1093	2036	2900	2900		1	9606
QLFHPEQLITGK	Unmodified	1409.7667	0.76669959	251;413;252	P68363;P68366;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	3.33	0.471			2	1		18.932	18.932	2;3	0.0006775	12127	DP1141_18	121.6	0			351390000	1175	251;252;413	1094	2037;2038;2039	2901;2902;2903	2902		2	9606
QLFHPEQLITGKEDAANNYAR	Unmodified	2414.1979	0.19787154	251;413;252	P68363;P68366;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	1	3.5	0.5			2	2		18.631	18.631	3;4	2.6192E-296	11542	DP1141_18	261.66	216.52			918120000	1176	251;252;413	1095	2040;2041;2042;2043	2904;2905;2906;2907;2908	2906		4	9606
QLKDNTCVVEFQFMLPTSHPNR	Unmodified	2660.2839	0.28392614	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					20.035	20.035	4	0.0095394	13741	DP1141_16	54.15	29.471			48483000	1177	302	1096	2044	2909	2909		1	9606
QLKDNTCVVEFQFMLPTSHPNR	Oxidation (M)	2676.2788	0.27884076	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					19.435	19.435	3	4.1395E-17	12906	DP1141_16	143.23	116.37			29360000	1178	302	1096	2045	2910	2910	288	0	9606
QLTEEDGVHSVIEENIK	Unmodified	1938.9535	0.95345032	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	2	1	1	1		18.336	18.336	2;3	1.9473E-24	11185	DP1141_16	193	142.65			545730000	1179	302	1097	2046;2047;2048;2049;2050	2911;2912;2913;2914;2915;2916;2917	2914		5	9606
QNLEPLFEQYINNLR	Unmodified	1889.9636	0.9635615	26;73	P04259;CON__P13647;P13647	KRT6B;KRT5	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					23.443	23.443	2	0	18868	DP1141_16	275.48	207.73		+	13653000	1180	73;26	1098	2051	2918;2919;2920	2919		3	9606
QNTLQLPPQAMERSNSCPELVLGR	Unmodified	2737.364	0.36396737	364	Q7Z418	KCNK18	Potassium channel subfamily K member 18	yes	yes	0	0	1	1	0	1					19.735	19.735	4	0.015012	13076	DP1141_16	46.368	20.35			375320000	1181	364	1099	2052	2921	2921		1	9606
QPILIYIPPYAELR	Unmodified	1684.9552	0.95522864	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.701	22.701	2	0.0012151	17751	DP1141_16	108.98	84.753			12053000	1182	39	1100	2053	2922;2923	2922		2	9606
QPLALNVAYR	Unmodified	1143.64	0.64004252	296	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		18.429	18.429	2	0.0076808	11637	DP1141_19	107.01	52.231			68922000	1183	296	1101	2054	2924;2925	2925		2	9606
QPNVQDFQFFPPR	Unmodified	1618.7892	0.78922595	50	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	2	0		1				20.804	20.804	2	0.0036159	14988	DP1141_17	125.74	86.112			2559900	1184	50	1102	2055	2926	2926		1	9606
QQVPSGESAILDR	Unmodified	1398.7103	0.71030693	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0.816	1	1	1			17.259	17.259	2	8.0673E-22	9519	DP1141_17	175.49	81.18			686620000	1185	101	1103	2056;2057;2058	2927;2928;2929;2930	2929		4	9606
QSLEASLAETEGR	Unmodified	1389.6736	0.67358707	25	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	0	1					18.24	18.24	2	2.6526E-294	10927	DP1141_16	318.59	249.74		+	376330000	1186	25	1104	2059	2931	2931		1	9606
QSNVAAPGDATPPAEKK	Unmodified	1679.8479	0.84786304	404	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2.5	0.5		1	1			13.76	13.76	3	3.5062E-73	4105	DP1141_17	193.54	167.31			11871000	1187	404	1105	2060;2061	2932;2933;2934;2935	2932		4	9606
QSSYSQQPYNNQGQQQNMESSGSQGGR	Oxidation (M)	2990.2445	0.24451675	391	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	1	0	3	0			1			14.818	14.818	3	3.3803E-06	5831	DP1141_18	93.104	83.771			127410000	1188	391	1106	2062	2936;2937	2937	357	2	9606
QSVEADINGLRR	Unmodified	1356.711	0.71097563	25	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	1	1	0	2					16.976	16.976	2;3	9.6755E-10	9022	DP1141_16	142	70.646		+	732350000	1189	25	1107	2063;2064	2938;2939	2939		2	9606
QTAAQLILK	Unmodified	984.59678	0.59678072	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		17.828	17.828	2	3.3189E-09	10546	DP1141_19	143.89	69.472			380710000	1190	56	1108	2065	2940	2940		1	9606
QTALVELLK	Unmodified	1013.6121	0.61209643	22	CON__P02769			yes	yes	0	0	0	5	0					1	19.832	19.832	2	0.006261	14245	DP1141_20	106.68	42.476		+	85295000	1191	22	1109	2066	2941	2941		1	
QTFSPFGQIMEIR	Oxidation (M)	1568.7657	0.76571331	268;145	Q01085;P31483	TIAL1;TIA1	Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40	no	no	0	1	0	4	0				1		20.731	20.731	2	0.030101	14801	DP1141_19	77.124	27.016			52221000	1192	268;145	1110	2067	2942	2942	151	0	9606
QTPAPAASVTGSR	Unmodified	1241.6364	0.6364137	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			14.538	14.538	2	1.3201000000000002E-115	5171	DP1141_17	213.35	132.89			51364000	1193	173	1111	2068;2069	2943;2944;2945;2946	2943		4	9606
QTYSTEPNNLK	Unmodified	1293.6201	0.62009493	176	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	5	0					1	14.948	14.948	2	6.3263E-81	6294	DP1141_20	204.42	138.96			94505000	1194	176	1112	2070	2947	2947		1	9606
QVFFELNGQLR	Unmodified	1349.7092	0.70918471	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				20.605	20.605	2	1.8385E-17	14682	DP1141_17	172.25	117.83			11426000	1195	112	1113	2071	2948	2948		0	9606
QVGYENAGTVEFLVDR	Unmodified	1795.8741	0.87407779	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					20.535	20.535	2	0	14586	DP1141_16	286.19	232.59			177480000	1196	112	1114	2072	2949;2950	2949		2	9606
QVLDNLTMEK	Oxidation (M)	1205.5962	0.59618837	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	1.5	0.5	1	1				17.024	17.024	2	4.218E-30	9025	DP1141_16	169.65	116.72		+	1170600000	1197	27	1115	2073;2074	2951;2952;2953;2954	2951	20	4	9606
QVLIASHLPSYELR	Unmodified	1624.8937	0.89369102	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					24.877	24.877	2;3	0	12134	DP1141_16	303.33	174.48			2299500000	1198	302	1116	2075;2076;2077	2955;2956;2957;2958;2959	2956		5	9606
QVQAEVPGSPIFVMR	Unmodified	1656.8658	0.86576171	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.335	20.335	2	8.2805E-140	14338	DP1141_16	268.91	170.94			468390000	1199	302	1117	2078	2960;2961;2962;2963	2961		4	9606
QVQAEVPGSPIFVMR	Oxidation (M)	1672.8607	0.86067633	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	1	1				19.204	19.204	2	2.2213E-07	12491	DP1141_17	127.87	96.025			16192000	1200	302	1117	2079;2080	2964;2965	2965	289	1	9606
QVQPQVQPQAHSQGPR	Unmodified	1783.9078	0.90777795	446	Q9ULV3	CIZ1	Cip1-interacting zinc finger protein	yes	yes	0	0	0	2	0		1				13.854	13.854	3	0.01013	4060	DP1141_17	76.358	48.248			1980400	1201	446	1118	2081	2966	2966		1	9606
QVVNIPSFIVR	Unmodified	1270.7398	0.73975656	177	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	20.808	20.808	2	9.4263E-05	15830	DP1141_20	134.77	73.937			36581000	1202	177	1119	2082	2967	2967		1	9606
RAMGEQAVALAR	Oxidation (M)	1287.6718	0.67175335	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	1	0	1					14.451	14.451	3	0.017201	4809	DP1141_16	71.085	10.443			21942000	1203	81	1120	2083	2968	2968	62	0	9606
RAVALDEAISQSTQFHDK	Unmodified	2015.0072	0.007217228	275	Q03001	DST	Dystonin	yes	yes	0	0	1	4	0				1		13.632	13.632	4	0.019464	4020	DP1141_19	59.634	17.796			1198500	1204	275	1121	2084	2969	2969		0	9606
RAYIAYELNSVQHR	Unmodified	1718.8853	0.8852516	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.039	17.039	3	5.1406E-139	9051	DP1141_16	219.84	171.31			873900000	1205	302	1122	2085	2970;2971	2971		2	9606
RCGVQSFYTPR	Unmodified	1369.6561	0.65610329	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	1	4	0				1		16.27	16.27	3	9.4142E-05	8003	DP1141_19	121.02	55.842			29899000	1206	367	1123	2086	2972	2972		0	9606
RDPALNSGVSQKPDPAK	Unmodified	1778.9275	0.92751034	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	2	2.67	1.49	2	1	1	1	1	13.759	13.759	3;4	5.8349E-16	4048	DP1141_19	157.54	118.38			152580000	1207	110	1124	2087;2088;2089;2090;2091;2092	2973;2974;2975;2976;2977;2978;2979;2980;2981;2982;2983	2980		10	9606
RFDDAVVQSDMK	Oxidation (M)	1425.6558	0.65582851	108	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			15.282	15.282	3	0.023481	6159	DP1141_18	74.987	46.704			0	1208	108	1125	2093	2984	2984	104	1	9606
RFVTPSEPVAHSR	Unmodified	1481.7739	0.77391024	41	O14654	IRS4	Insulin receptor substrate 4	yes	yes	0	0	1	1	0	1					14.643	14.643	3	0.0010576	5176	DP1141_16	134.06	102.42			31307000	1209	41	1126	2094	2985;2986	2985		2	9606
RGFAFVTFDDHDSVDKIVIQK	Unmodified	2436.2438	0.24375911	100	P09651;A0A2R8Y4L2;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	2	4	0				1		19.53	19.53	3	0.015545	13351	DP1141_19	92.671	41.801			20217000	1210	100	1127	2095	2987	2987		1	9606
RGFAFVTFDDHDTVDKIVVQK	Unmodified	2436.2438	0.2437591	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	2	4	0				1		19.53	19.53	4	0.021918	13310	DP1141_19	73.688	1.0111			76567000	1211	193	1128	2096	2988	2988		1	9606
RGFGFVTFDDHDPVDK	Unmodified	1850.8588	0.85876208	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				1		19.135	19.135	3	0.0083502	12384	DP1141_19	64.89	39.972			84106000	1212	134	1129	2097	2989	2989		1	9606
RGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR	Unmodified	3434.3045	0.30453405	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	1	4	0				1		20.23	20.23	3	7.3945E-10	14408	DP1141_19	98.718	95.363			12900000	1213	146	1130	2098	2990	2990		1	9606
RGPCIIYNEDNGIIK	Unmodified	1760.888	0.88795372	154	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			18.034	18.034	3	0.0051643	10533	DP1141_18	81.448	53.358			16105000	1214	154	1131	2099	2991	2991		1	9606
RHDNIKPSDEVYR	Unmodified	1627.8067	0.80666693	369	Q86UA1	PRPF39	Pre-mRNA-processing factor 39	yes	yes	0	0	2	3	0			1			13.981	13.981	4	9.9465E-15	4226	DP1141_18	149.57	116.38			6585000	1215	369	1132	2100	2992	2992		1	9606
RHPDYSVVLLLR	Unmodified	1466.8358	0.83578221	21	CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	1	2	0		1				19.49	19.49	3	0.012671	12852	DP1141_17	77.894	41.478		+	105040000	1216	21	1133	2101	2993	2993		1	9606
RHPEYAVSVLLR	Unmodified	1438.8045	0.80448208	22	CON__P02769			yes	yes	0	0	1	4	0.707			1	2	1	17.906	17.906	2;3	1.2175E-14	10935	DP1141_20	156.52	116		+	237870000	1217	22	1134	2102;2103;2104;2105	2994;2995;2996;2997;2998	2997		4	
RHPYFYAPELLYYANK	Unmodified	2044.0207	0.020682448	22	CON__P02769			yes	yes	0	0	1	5	0					1	20.308	20.308	3	0.0022747	14989	DP1141_20	87.824	63.471		+	23925000	1218	22	1135	2106	2999;3000	3000		2	
RIEPAEELNSNDMK	Unmodified	1644.7777	0.77773456	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	0			1			16.217	16.217	3	0.014025	7582	DP1141_18	55.291	25.354			6403300	1219	173	1136	2107	3001	3001		1	9606
RIGYPVMIK	Oxidation (M)	1091.6161	0.61613595	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	0.816	1	1	1			16.4	16.4	2	4.0257E-05	7842	DP1141_16	110.12	60.584			291000000	1220	405	1137	2108;2109;2110	3002;3003;3004	3002	371	2	9606
RILNVPQELYEK	Unmodified	1500.83	0.83002813	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.359	18.359	3	0.0051548	11125	DP1141_16	103.46	70.234			54303000	1221	302	1138	2111	3005	3005		0	9606
RIPIHNEDITYDELVLMMQR	2 Oxidation (M)	2517.2356	0.23557896	390	Q92734	TFG	Protein TFG	yes	yes	0	2	1	3	0			2			19.034	19.034	3;4	2.5827E-08	12184	DP1141_18	125.96	93.397			290930000	1222	390	1139	2112;2113	3006;3007;3008	3006	352;353	3	9606
RIPIHNEDITYDELVLMMQR	Oxidation (M)	2501.2407	0.24066434	390	Q92734	TFG	Protein TFG	yes	yes	0	1	1	3	0			1			19.989	19.989	4	0.0077823	13670	DP1141_18	77.39	51.804			19284000	1223	390	1139	2114	3009	3009	352;353	1	9606
RIPVQAVWAGWGHASENPK	Unmodified	2102.081	0.080991294	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1	0	1					18.935	18.935	3	0.00031161	12102	DP1141_16	126.07	87.196			911120000	1224	302;39	1140	2115	3010	3010		1	9606
RKGDEVDGVDEVAK	Unmodified	1515.7529	0.75290002	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	3	0.816		1	1	1		14.236	14.236	3	5.4597E-08	4568	DP1141_18	142.95	108.03			798070000	1225	101	1141	2116;2117;2118	3011;3012;3013	3012		3	9606
RKPGTLQDQHFSQANR	Unmodified	1881.9558	0.95579078	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	2	2.71	1.03	1	2	2	2		13.798	13.798	3;4	0	3907	DP1141_18	341.85	273.59			848590000	1226	343	1142	2119;2120;2121;2122;2123;2124;2125	3014;3015;3016;3017;3018;3019;3020;3021;3022;3023;3024;3025;3026;3027;3028	3020		13	9606
RLAQQMENRPSVQAALK	Oxidation (M)	1955.0371	0.037077568	460	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	2	4	0				1		15.003	15.003	4	0.025587	5870	DP1141_19	58.885	34.405			8295300	1227	460	1143	2126	3029	3029	421	0	9606
RLLLEDLVK	Unmodified	1097.6808	0.6808447	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.835	19.835	2	0.00079777	13466	DP1141_16	116.25	59.073			134710000	1228	302	1144	2127	3030	3030		1	9606
RLLTEQETHR	Unmodified	1281.6789	0.67894722	4	A4FU69	EFCAB5	EF-hand calcium-binding domain-containing protein 5	yes	yes	0	0	1	2.75	1.48	1	1	1		1	15.414	15.414	2	0.0021657	6794	DP1141_20	114.5	60.747			1423900000	1229	4	1145	2128;2129;2130;2131	3031;3032;3033;3034;3035;3036	3035		6	9606
RLNISYTR	Unmodified	1021.5669	0.56687757	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2	0		1				15.774	15.774	2	0.0096206	6732	DP1141_17	101.6	56.519			129610000	1230	405	1146	2132	3037	3037		1	9606
RLPDGIGQLK	Unmodified	1095.64	0.64004252	312	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	1	2	0		1				16.909	16.909	2	1.1291E-05	9031	DP1141_17	123.21	49.233			6074300	1231	312	1147	2133	3038	3038		0	9606
RLTFLVAQK	Unmodified	1074.655	0.6549643	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.439	17.439	2	0.015002	9714	DP1141_16	113.26	38.147			787110000	1232	302	1148	2134	3039	3039		0	9606
RMSDTVTVK	Acetyl (Protein N-term);Oxidation (M)	1093.5438	0.54375887	323	Q15032	R3HDM1	R3H domain-containing protein 1	yes	yes	1	1	1	1	0	1					14.778	14.778	2	0.036419	5350	DP1141_16	42.869	10.259			0	1233	323	1149	2135	3040	3040	307	1	9606
RNPDTQWITKPVHK	Unmodified	1718.9216	0.92163711	213	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	2	5	0					1	15.097	15.097	4	0.0064798	6460	DP1141_20	81.278	57.344			35966000	1234	213	1150	2136	3041	3041		1	9606
RPAEDMEEEQAFKR	Oxidation (M)	1750.7944	0.79444726	216	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3.5	0.5			1	1		14.416	14.416	3	0.0055164	4932	DP1141_18	125.47	95.242			72054000	1235	216	1151	2137;2138	3042;3043	3042	206	2	9606
RPASHQTFPLQLESGQTVECTVAQYFK	Unmodified	3121.5291	0.52911844	444	Q9UL18	AGO1	Protein argonaute-1	yes	yes	0	0	1	3	0			1			13.754	13.754	7	0.035721	3791	DP1141_18	8.6192	0.17947			6448300	1236	444	1152	2139	3044	3044		1	9606
RPCFSALTPDETYVPK	Unmodified	1879.9138	0.91383411	22	CON__P02769			yes	yes	0	0	1	3	0			1			18.534	18.534	3	0.0019657	11381	DP1141_18	92.952	68.159		+	45236000	1237	22	1153	2140	3045	3045		1	
RPEKPVPPPPPIAK	Unmodified	1521.9031	0.90313349	462	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	3	0			1			14.522	14.522	3	0.023978	5084	DP1141_18	101.45	84.679			35785000	1238	462	1154	2141	3046	3046		1	9606
RPEVDPLPFPGPFPAGPLAVAGGPR	Unmodified	2510.3434	0.34341357	111	P11474	ESRRA	Steroid hormone receptor ERR1	yes	yes	0	0	1	3	0			1			22.152	22.152	3	0.00056991	16805	DP1141_18	67.552	44.967			0	1239	111	1155	2142	3047	3047		1	9606
RPGAALDPGCVLAK	Unmodified	1423.7606	0.76056836	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				16.987	16.987	2;3	8.0531E-43	8769	DP1141_16	160.91	104.28			2295700000	1240	302	1156	2143;2144;2145	3048;3049;3050;3051;3052	3048		5	9606
RPGAVLEAGCVVAR	Unmodified	1453.7824	0.78236643	39	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.527	16.527	3	0.020815	8239	DP1141_16	53.377	30.199			57860000	1241	39	1157	2146	3053	3053		1	9606
RPGIGTVGKPIK	Unmodified	1221.7557	0.75574098	444	Q9UL18	AGO1	Protein argonaute-1	yes	yes	0	0	2	1	0	1					14.283	14.283	3	0.0083672	4740	DP1141_16	124.6	70.533			8005800	1242	444	1158	2147	3054	3054		1	9606
RPISADSAIMNPASK	Oxidation (M)	1572.793	0.7929907	266	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	1	1	1	0	1					15.228	15.228	3	0.0016383	6002	DP1141_16	103.39	69.29			23926000	1243	266	1159	2148	3055	3055	234	1	9606
RPKEEEWDPEYTPK	Unmodified	1802.8475	0.84752869	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	1	0	1					16.228	16.228	3	0.00052132	7566	DP1141_16	141.34	96.885			43419000	1244	435	1160	2149	3056	3056		0	9606
RPLEMEQQQAYRPEMK	2 Oxidation (M)	2064.9721	0.97209405	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	2	2	2.83	1.34	1	2	1	1	1	14.265	14.265	3;4	6.3101E-06	4599	DP1141_18	140.96	98.277			261630000	1245	417	1161	2150;2151;2152;2153;2154;2155	3057;3058;3059;3060;3061;3062;3063;3064;3065	3061	383;384	9	9606
RPLEMEQQQAYRPEMK	Oxidation (M)	2048.9772	0.97717943	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	1	2	3	0.816		1	1	1		15.217	15.217	3	0.000505	6224	DP1141_17	111.22	84.014			177160000	1246	417	1161	2156;2157;2158	3066;3067;3068	3066	383;384	3	9606
RPLEMEQQQAYRPEMK	Unmodified	2032.9823	0.98226481	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	2	2.5	0.5		1	1			16.058	16.058	3	5.6563E-09	7532	DP1141_17	118.2	72.661			20130000	1247	417	1161	2159;2160	3069;3070	3069		1	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	Oxidation (M)	3238.5174	0.51738456	249	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	3.5	0.5			1	1		15.631	15.631	3;4	2.3659E-08	6820	DP1141_18	74.408	50.668			75970000	1248	249	1162	2161;2162	3071;3072	3071	220	2	9606
RQAVDVSPLRR	Unmodified	1295.7422	0.74221618	178	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	2	5	0					1	14.568	14.568	3	0.026955	5740	DP1141_20	84.687	34.538			7738100	1249	178	1163	2163	3073	3073		0	9606
RSDAEPSVFLFKPSDEQLK	Unmodified	2192.1113	0.11134795	29	CON__Q05B55			yes	yes	0	0	2	4.5	0.5				1	1	18.928	18.928	3	2.6551E-13	12266	DP1141_19	115.91	83.126		+	284470000	1250	29	1164	2164;2165	3074;3075	3074		1	
RSEACPCQPDSGSPLPAEEEK	Unmodified	2343.0107	0.01072398	312	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	1	2	0		1				15.48	15.48	3	0.0067558	6713	DP1141_17	68.552	45.907			10791000	1251	312	1165	2166	3076	3076		1	9606
RSGASGASAAPAASAAAALAPSATR	Unmodified	2140.0985	0.098491851	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	1	4	0				1		16.86	16.86	3	9.4962E-05	8985	DP1141_19	106.1	76.208			35099000	1252	367	1166	2167	3077;3078	3077		2	9606
RSYDELEAQAK	Unmodified	1308.631	0.63099397	470				yes	yes	0	0	1	1	0	1					14.507	14.507	3	0.0099751	5084	DP1141_16	88.134	36.293	+		1679300	1253	470	1167	2168	3079	3079		1	9606
RTADAEIKMQSMQTPLGK	2 Oxidation (M)	2036.0031	0.0030598275	301	Q13029	PRDM2	PR domain zinc finger protein 2	yes	yes	0	2	2	5	0					2	22.11	22.11	2	0.0043043	17259	DP1141_20	93.839	23.111			0	1254	301	1168	2169;2170	3080;3081	3080	262;263	2	9606
RTDEEGKDVPDHAVLEMK	Oxidation (M)	2083.9844	0.98443288	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	1	2	2.67	0.471		1	2			14.633	14.633	3;4	2.203E-13	5254	DP1141_17	152.68	98.427			246970000	1255	417	1169	2171;2172;2173	3082;3083;3084;3085	3082	385	4	9606
RVDPVYIHLAER	Unmodified	1466.7994	0.7993967	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	3	1		1		1		17.17	17.17	3	0.00048191	9344	DP1141_17	133.04	93.161			529220000	1256	302	1170	2174;2175	3086;3087;3088	3086		2	9606
RVIISAPSADAPMFVMGVNHEK	2 Oxidation (M)	2400.193	0.19298586	75	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	2	1	2	0		1				17.743	17.743	3	0.030776	10258	DP1141_17	46.154	24.037			0	1257	75	1171	2176	3089	3089	55;56	1	9606
RVSALNSVHCEHVEDEGESR	Unmodified	2309.0455	0.045470003	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.834	14.834	3	5.486E-05	5482	DP1141_16	111.57	81.752			11032000	1258	302	1172	2177	3090;3091	3090		2	9606
RVTIMPKDIQLAR	Oxidation (M)	1555.8868	0.8868315	361	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	yes	no	0	1	2	5	0					1	16.297	16.297	3	0.0031032	8415	DP1141_20	104.94	42.204			260350000	1259	361	1173	2178	3092	3092	326	1	9606
RYDDPEVQKDIK	Unmodified	1504.7522	0.75217174	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	2	3	0			1			14.622	14.622	3	0.0024607	5168	DP1141_18	110.98	65.098			26605000	1260	159	1174	2179	3093	3093		0	9606
RYPTVHEIEVIGGYLALQK	Unmodified	2185.1895	0.18953869	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	4	0				2		21.426	21.426	3;4	0.0053351	15722	DP1141_19	79.97	56.522			22655000	1261	343	1175	2180;2181	3094;3095	3095		1	9606
RYQDIIHSIHLAR	Unmodified	1620.8849	0.88485767	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	1	2	0		1				17.905	17.905	4	0.00066531	10571	DP1141_17	107.65	83.115			6311100	1262	441	1176	2182	3096	3096		1	9606
RYQKSTELLIR	Unmodified	1405.8041	0.80414773	361;349	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	2	5	0					1	15.395	15.395	3	0.023934	7038	DP1141_20	87.667	64.782			25667000	1263	361;349	1177	2183	3097	3097		0	9606
SAGQGEVLVYVEDPAGHQEEAK	Unmodified	2312.0921	0.092069069	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				18.348	18.348	3	3.8247E-22	11250	DP1141_17	153.68	128.07			13101000	1264	131	1178	2184	3098	3098		0	9606
SAHLQWMVVR	Acetyl (Protein N-term);Oxidation (M)	1283.6445	0.64447597	176	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	1	0	5	0					1	19.054	19.054	2	0.010821	13061	DP1141_20	74.301	32.425			33573000	1265	176	1179	2185	3099	3099	176	1	9606
SAINEVVTR	Unmodified	987.53491	0.53490874	242	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	15.97	15.97	2	3.2484E-08	7876	DP1141_20	134.77	70.558			71142000	1266	242	1180	2186	3100;3101	3100		2	9606
SALSCVISK	Unmodified	963.50592	0.5059168	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	2	0		1				16.907	16.907	2	7.435E-05	8925	DP1141_17	120.87	58.761			59231000	1267	441	1181	2187	3102	3102		1	9606
SDAEPSVFLFKPSDEQLK	Unmodified	2036.0102	0.01023692	29	CON__Q05B55			yes	yes	0	0	1	4.67	0.471				1	2	19.916	19.916	2;3	0	14380	DP1141_20	330.68	258.39		+	757590000	1268	29	1182	2188;2189;2190	3103;3104;3105;3106;3107	3105		4	
SDFISVLQSSFLK	Unmodified	1469.7766	0.77659558	360	Q6ZW05	PTCHD4	Patched domain-containing protein 4	yes	yes	0	0	0	5	0					1	18.573	18.573	2	0.010902	12243	DP1141_20	94.409	31.225			42648000	1269	360	1183	2191	3108	3108		1	9606
SDKGTEGWESAATQTK	Unmodified	1694.7748	0.77475768	451	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	1	2	0		1				15.658	15.658	3	1.6975E-08	6914	DP1141_17	127.66	90.726			27417000	1270	451	1184	2192	3109	3109		0	9606
SDLEMQYETLQEELMALK	2 Oxidation (M)	2202.0072	0.0072017319	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	0	1	0	2					23.396	23.396	2;3	1.3886E-285	18816	DP1141_16	258.02	195.09		+	16636000	1271	27	1185	2193;2194	3110;3111;3112	3111	21;22	3	9606
SDLEMQYETLQEELMALKK	2 Oxidation (M)	2330.1022	0.10216475	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	1	2.4	1.5	2	1	1		1	21.947	21.947	2;3	1.1023E-14	16834	DP1141_17	152.94	124.98		+	156740000	1272	27	1186	2195;2196;2197;2198;2199	3113;3114;3115;3116;3117;3118;3119;3120	3118	21;22	7	9606
SDMNTVLNYIFSHAQVTK	Oxidation (M)	2083.0044	0.004440036	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.934	21.934	3	3.7861E-09	16437	DP1141_16	144.15	117.12			143120000	1273	302	1187	2200	3121;3122	3121	290	2	9606
SDSEKLNLDSIIGR	Acetyl (Protein N-term)	1587.8104	0.8104149	218	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	1	0	1	3	1		1		1		20.832	20.832	2	1.5059999999999998E-185	15099	DP1141_19	256.47	207.87			144080000	1274	218	1188	2201;2202	3123;3124	3124		2	9606
SELDQLR	Acetyl (Protein N-term)	901.45051	0.45051041	240	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	yes	yes	1	0	0	2	0		1				19.028	19.028	1	0.015384	12484	DP1141_17	79.116	10.201			5625600	1275	240	1189	2203	3125	3125		1	9606
SEPALYF	Unmodified	825.39087	0.39087027	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3	0.816		1	1	1		21.657	21.657	1	8.7601E-09	16287	DP1141_19	134.24	102.31			141390000	1276	343	1190	2204;2205;2206	3126;3127;3128	3128		2	9606
SEQEFQEQLESAR	Unmodified	1579.7114	0.71142914	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		18.034	18.034	2	0.0021402	11005	DP1141_19	106.67	64.457			674660000	1277	405	1191	2207;2208	3129;3130	3130		2	9606
SEQEFQEQLESARR	Unmodified	1735.8125	0.81254017	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	1	0	2					17.098	17.098	2;3	0.00025569	9068	DP1141_16	91.961	25.906			37207000	1278	405	1192	2209;2210	3131;3132	3131		1	9606
SESPKEPEQLR	Unmodified	1298.6466	0.64664404	100	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				1		14.019	14.019	3	2.8998E-09	4521	DP1141_19	149.33	97.896			10044000	1279	100	1193	2211	3133	3133		1	9606
SESSTSAFSTPTR	Unmodified	1356.6157	0.61573784	386	Q8WWQ0	PHIP	PH-interacting protein	yes	yes	0	0	0	2	0		1				15.658	15.658	2	6.9622E-22	6752	DP1141_17	166.97	100.54			2808300	1280	386	1194	2212	3134	3134		1	9606
SETAPAAPAAAPPAEK	Acetyl (Protein N-term)	1519.7518	0.75183739	118	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	3.33	1.7	1			1	1	16.288	16.288	2	3.5787E-05	8145	DP1141_19	142.97	20.624			836130000	1281	118	1195	2213;2214;2215	3135;3136;3137	3136		3	9606
SETAPAAPAAAPPAEKAPVK	Acetyl (Protein N-term)	1915.0051	0.005091963	118	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	1	4	0				1		15.974	15.974	2	2.1631E-05	7668	DP1141_19	115.83	94.195			504980000	1282	118	1196	2216	3138;3139	3138		2	9606
SETAPAAPAAAPPAEKAPVKK	Acetyl (Protein N-term)	2043.1001	0.10005498	118	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	2	4	0				1		15.003	15.003	3	0.0070311	6115	DP1141_19	55.453	39.33			422980000	1283	118	1197	2217	3140	3140		1	9606
SFGLPSIGR	Unmodified	932.50797	0.50796571	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			19.534	19.534	2	6.2185E-08	12905	DP1141_18	131.03	48.791			220810000	1284	81	1198	2218;2219	3141;3142;3143;3144	3144		4	9606
SFGSTCQLSEK	Unmodified	1242.5551	0.55505184	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	0	1					15.831	15.831	2	3.2941E-05	7125	DP1141_16	150.35	121.18			16065000	1285	110	1199	2220	3145	3145		0	9606
SFLLDLLNATGK	Unmodified	1290.7184	0.71835242	38	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			23.978	23.978	2	0.030359	19500	DP1141_18	104.22	40.742			15251000	1286	38	1200	2221	3146	3146		1	9606
SFYPEEVSSMVLTK	Unmodified	1615.7804	0.78036033	108	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			20.919	20.919	2	0.026727	14892	DP1141_18	76.522	60.936			13083000	1287	108	1201	2222	3147	3147		1	9606
SGASGASAAPAASAAAALAPSATR	Unmodified	1983.9974	0.99738082	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4	0				2		17.928	17.928	2;3	0	10593	DP1141_19	352.77	289.3			396180000	1288	367	1202	2223;2224	3148;3149;3150;3151;3152	3149		5	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	2 Oxidation (M)	3026.3824	0.38237913	250	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	2	1	3	0			1			19.834	19.834	3	0.0021468	13472	DP1141_18	48.18	24.711			8574600	1289	250	1203	2225	3153	3153	221;222	1	9606
SGELPPNINIKEPR	Acetyl (Protein N-term)	1604.8522	0.85222014	424	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	1	0	1	4	0				1		18.528	18.528	2	0.0095118	11753	DP1141_19	70.942	45.725			14753000	1290	424	1204	2226	3154	3154		1	9606
SGGASHSELIHNLR	Unmodified	1476.7433	0.74333839	132	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	5	0					1	14.853	14.853	3	0.00027394	6099	DP1141_20	131.32	75.546			56213000	1291	132	1205	2227	3155;3156	3155		2	9606
SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK	Unmodified	3011.2302	0.2302469	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				15.658	15.658	3	1.3471E-14	6927	DP1141_17	115.72	104.91			58340000	1292	297	1206	2228	3157	3157		1	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	Unmodified	2797.3361	0.33609636	93;253;308	P07437;P68371;P04350;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	1	4	0.816			1	1	1	22.263	22.263	3	1.6515E-94	17769	DP1141_20	197.28	165.46			83177000	1293	93;253;308	1207	2229;2230;2231	3158;3159;3160;3161;3162;3163	3162		6	9606
SGVHTFPAVLQSSGLYSLSSMVTVPASSSGQTFTCNVAHPASSTK	Oxidation (M)	4598.2057	0.20574198	11	CON__ENSEMBL:ENSBTAP00000024466			yes	yes	0	1	0	4	0				1		20.832	20.832	4	1.0288999999999999E-60	15113	DP1141_19	140.97	124.79		+	52596000	1294	11	1208	2232	3164;3165;3166	3165	4	3	
SGVSDHWALDDHHALHLTR	Unmodified	2166.0355	0.035497664	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.14	0.99	1		3	3		17.332	17.332	3;4;5	1.7349E-07	9501	DP1141_18	188.58	144.78			2046399999.9999998	1295	427	1209	2233;2234;2235;2236;2237;2238;2239	3167;3168;3169;3170;3171;3172;3173;3174;3175;3176	3173		10	9606
SGVSLAALK	Unmodified	844.50182	0.5018177	118	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	0	4	0				1		17.528	17.528	2	0.012889	10074	DP1141_19	118.74	47.447			2137799999.9999998	1296	118	1210	2240	3177	3177		0	9606
SGVSLAALKK	Unmodified	972.59678	0.59678072	118	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	yes	no	0	0	1	4.5	0.5				1	1	15.802	15.802	2	2.1198E-08	7355	DP1141_19	140.14	84.018			1041599999.9999999	1297	118	1211	2241;2242	3178;3179;3180	3179		2	9606
SHFEQWGTLTDCVVMR	Oxidation (M)	1980.8822	0.88221641	100	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		19.37	19.37	3	0.021725	12947	DP1141_19	59.728	36.925			5374200	1298	100	1212	2243	3181	3181	83	1	9606
SHTILLVQPTK	Acetyl (Protein N-term)	1277.7343	0.73433683	263	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	5	0					1	18.373	18.373	2	0	11765	DP1141_20	321.34	241.12			1308800000	1299	263	1213	2244	3182;3183	3182		2	9606
SIAFPSIGSGR	Unmodified	1090.5771	0.57710791	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		19.028	19.028	2	2.4776E-21	12409	DP1141_19	164.68	100.48			624710000	1300	56	1214	2245	3184;3185	3185		2	9606
SIFDHIK	Unmodified	858.45995	0.45995289	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		1				17.506	17.506	2	0.0084984	9914	DP1141_17	119.56	30.914			166420000	1301	435	1215	2246	3186	3186		1	9606
SIFQHIQSAQSQR	Unmodified	1528.7746	0.77463852	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	1.1	2	2		1		16.863	16.863	2;3	5.955E-82	8915	DP1141_17	202.18	148.43			686790000	1302	457	1216	2247;2248;2249;2250;2251	3187;3188;3189;3190;3191;3192;3193	3191		7	9606
SILPTAPR	Unmodified	853.50215	0.50215205	137	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	3	0			1			16.792	16.792	2	0.025358	8702	DP1141_18	94.662	49.941			20390000	1303	137	1217	2252	3194	3194		1	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	Oxidation (M)	2676.216	0.21596573	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	1	1		1			18.036	18.036	3	0.0011056	10834	DP1141_16	68.552	54.145			282880000	1304	405	1218	2253;2254	3195;3196	3195	372	2	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	Oxidation (M)	3169.4557	0.4556955	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.4	1.2	2		2	1		16.943	16.943	4;5	7.864699999999999E-50	8827	DP1141_18	163.6	149.59			356910000	1305	405	1219	2255;2256;2257;2258;2259	3197;3198;3199;3200;3201;3202;3203;3204	3202	372	8	9606
SINPDEAVAYGAAVQAAILMGDK	Oxidation (M)	2319.1417	0.1416618	105	P0DMV8;P0DMV9;P34931	HSPA1A;HSPA1B;HSPA1L	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like	yes	no	0	1	0	3	0			2			23.122	23.122	2;3	8.81E-14	18351	DP1141_18	132.62	104.32			17363000	1306	105	1220	2260;2261	3205;3206	3206	101	2	9606
SIPLDEGEDEAQR	Unmodified	1457.6634	0.66341631	313	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.653	16.653	2	0.00080414	8376	DP1141_16	102.52	69.261			0	1307	313	1221	2262	3207	3207		1	9606
SIPSLVDGFKPGQR	Unmodified	1499.8096	0.80962704	273	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	1	1	0	1					18.801	18.801	3	0.029329	11824	DP1141_16	74.698	51.917			4233800	1308	273	1222	2263	3208	3208		1	9606
SIPSMVDGLKPGQR	Oxidation (M)	1499.7766	0.77661235	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	1	1.5	0.5	1	1				16.143	16.143	3	0.0027545	7553	DP1141_16	103.14	85.414			107340000	1309	110	1223	2264;2265	3209;3210;3211	3209	113	3	9606
SIPSMVDGLKPGQR	Unmodified	1483.7817	0.78169773	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	1	0	1					17.84	17.84	3	0.024928	10235	DP1141_16	82.543	60.515			10571000	1310	110	1223	2266	3212	3212		1	9606
SIQFVDWCPTGFK	Unmodified	1583.7442	0.74424959	251;252	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	2	1	1		1			21.734	21.734	2	8.4408E-116	16253	DP1141_18	215.87	158.09			392850000	1311	251;252	1224	2267;2268	3213;3214;3215;3216	3214		4	9606
SISISVAGGGGGFGAAGGFGGR	Unmodified	1837.9071	0.90710925	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0		1				20.212	20.212	2	0.019916	14119	DP1141_17	68.033	19.52		+	0	1312	28	1225	2269	3217	3217		1	9606
SISISVAR	Unmodified	831.48142	0.48141661	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.41	1	1	1	1	1	16.581	16.581	2	6.749100000000001E-55	8313	DP1141_17	189.62	41.544		+	3017899999.9999995	1313	74	1226	2270;2271;2272;2273;2274	3218;3219;3220;3221;3222;3223;3224;3225;3226;3227;3228	3221		10	9606
SITVLVEGENTR	Unmodified	1316.6936	0.69359423	150	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			17.929	17.929	2	8.259E-14	10396	DP1141_18	147.73	84.313			0	1314	150	1227	2275	3229	3229		1	9606
SIVAVEPR	Unmodified	869.49707	0.49706667	350	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	4	0				1		16.604	16.604	2	0.014406	8560	DP1141_19	97.473	21.438			23452000	1315	350	1228	2276	3230	3230		1	9606
SKAEAESLYQSK	Unmodified	1339.662	0.66195975	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					14.451	14.451	2	2.6827E-291	4804	DP1141_16	264.3	157.71		+	10104000	1316	74	1229	2277	3231;3232;3233	3231		3	9606
SKAECEILMMVGLPAAGK	2 Oxidation (M)	1935.9468	0.9467905	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	2	1	2	0		1				19.104	19.104	3	0.018735	12415	DP1141_17	52.784	26.193			10570000	1317	417	1230	2278	3234	3234	386;387	1	9606
SKELTTEIDNNIEQISSYK	Unmodified	2211.0907	0.090672086	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1.5	0.5	1	1				19.626	19.626	3	6.5536E-19	13518	DP1141_16	105.95	72.575		+	218110000	1318	25	1231	2279;2280	3235;3236	3235		2	9606
SKGSYSCEVTHEGSTVTK	Unmodified	1955.8895	0.88946986	31	CON__Q1RMN8			yes	yes	0	0	1	4.75	0.433				1	3	14.12	14.12	2;3;4	0	4944	DP1141_20	289.87	236.86		+	4060299999.9999995	1319	31	1232	2281;2282;2283;2284	3237;3238;3239;3240;3241;3242;3243	3242		7	
SKLPKPVQDLIK	Unmodified	1364.8391	0.83913625	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0.707	1	2	1			17.421	17.421	2;3	1.0958E-20	9546	DP1141_18	166.62	141.28			446400000	1320	101	1233	2285;2286;2287;2288	3244;3245;3246;3247;3248	3248		4	9606
SLAAALDILNTATR	Unmodified	1428.7936	0.79364262	382	Q8TB52	FBXO30	F-box only protein 30	yes	yes	0	0	0	3	0			1			22.347	22.347	2	2.0858E-08	17103	DP1141_18	175.74	123.79			0	1321	382	1234	2289	3249	3249		1	9606
SLDLDSIIAEVK	Unmodified	1301.7078	0.70784731	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	3	1.41	1	1	1	1	1	22.591	22.591	2	1.5526999999999998E-40	17765	DP1141_17	215.72	149.09		+	755360000	1322	74	1235	2290;2291;2292;2293;2294	3250;3251;3252;3253;3254;3255;3256;3257;3258	3255		8	9606
SLEEIYLFSLPIK	Unmodified	1550.8596	0.85959692	116	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	2.5	1.5	1			1		23.695	23.695	2	6.9445E-181	19329	DP1141_19	290.51	214.28			38488000	1323	116	1236	2295;2296	3259;3260;3261	3260		3	9606
SLFLGQK	Unmodified	791.45414	0.45413923	56	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		17.628	17.628	1	9.0999E-71	10160	DP1141_19	191.91	68.936			91667000	1324	56	1237	2297	3262	3262		1	9606
SLGTRPPHVFAIADK	Unmodified	1607.8784	0.87837531	448	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	2	0		1				17.106	17.106	3	2.2783E-07	9246	DP1141_17	126.56	86.191			57519000	1325	448	1238	2298	3263	3263		0	9606
SLKDEDVLQK	Unmodified	1173.6241	0.62411768	436	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	1	1	0	1					15.428	15.428	2	0.0082338	6325	DP1141_16	112.11	46.034			6109600	1326	436	1239	2299	3264	3264		0	9606
SLLEGEGSSGGGGR	Unmodified	1261.5899	0.58985744	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.25	1.09	1	2		1		15.657	15.657	2	0	6924	DP1141_17	265.67	217.38		+	766230000	1327	25	1240	2300;2301;2302;2303	3265;3266;3267;3268;3269	3267		5	9606
SLLIDFFR	Unmodified	1009.5597	0.55966693	423	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		23.293	23.293	2	0.00017311	18805	DP1141_19	124.83	84.731			4840800	1328	423	1241	2304	3270	3270		0	9606
SLNNQFASFIDK	Unmodified	1382.683	0.68302954	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	1	0	1					20.295	20.295	2	2.1888999999999998E-66	14141	DP1141_16	184.36	53.948		+	0	1329	74	1242	2305	3271	3271		1	9606
SLNNQFASFIDKVR	Unmodified	1637.8526	0.85255449	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	1	1.5	0.5	1	1				20.57	20.57	3	0.00056838	14550	DP1141_16	112.02	84.684		+	371420000	1330	74	1243	2306;2307	3272;3273	3272		1	9606
SLPASLSFLVK	Unmodified	1160.6805	0.68051035	312	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	2	0		1				21.472	21.472	2	0.0052156	15964	DP1141_17	111.46	81.137			2432600	1331	312	1244	2308	3274	3274		1	9606
SLPDLGLR	Unmodified	869.49707	0.49706667	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				18.869	18.869	2	1.9427E-13	12077	DP1141_16	145.04	78.052			585100000	1332	112	1245	2309;2310	3275;3276	3275		2	9606
SLQSVAEER	Unmodified	1017.5091	0.50908792	213	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	0	1					15.632	15.632	2	0.0017027	6585	DP1141_16	138.4	72.323			9147600	1333	213	1246	2311	3277	3277		0	9606
SLVNLGGSK	Unmodified	873.49198	0.4919813	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.33	0.471	2	1				16.625	16.625	1;2	0.001509	8375	DP1141_16	115.49	55.136		+	1041499999.9999999	1334	74	1247	2312;2313;2314	3278;3279;3280;3281;3282	3279		5	9606
SLVQANPEVAMDSIIHMTQHISPTQR	2 Oxidation (M)	2934.4328	0.43277522	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2.86	1.46	2	1	1	2	1	18.316	18.316	3;4	1.7175E-08	11108	DP1141_16	116.44	86.527			743520000	1335	302	1248	2315;2316;2317;2318;2319;2320;2321	3283;3284;3285;3286;3287;3288;3289;3290;3291;3292;3293;3294;3295	3287	291;292	12	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Oxidation (M)	2918.4379	0.43786059	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	3.2	1.6	1	1	1		2	19.813	19.813	4	4.6531E-26	13165	DP1141_16	151.45	126.67			342980000	1336	302	1248	2322;2323;2324;2325;2326	3296;3297;3298;3299;3300;3301;3302	3296	291;292	6	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Unmodified	2902.4429	0.44294597	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.837	21.837	3;4	4.4967E-42	16513	DP1141_16	166.43	126.43			102260000	1337	302	1248	2327;2328	3303;3304;3305;3306	3305		4	9606
SMSVYCTPNKPSR	Oxidation (M)	1541.6966	0.69664747	119	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	1	1	1	0	1					14.019	14.019	2	0.011053	4261	DP1141_16	115.18	93.803			0	1338	119	1249	2329	3307	3307	131	1	9606
SMVTEEFNGSDWEK	Oxidation (M)	1673.6879	0.6879165	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	1	0	4.5	0.5				1	1	18.593	18.593	2	9.9539E-10	12246	DP1141_20	154.15	125.77			72565000	1339	367	1250	2330;2331	3308;3309;3310	3310	331	3	9606
SNEKEQLQGLNDR	Unmodified	1529.7434	0.74339797	91	P07197	NEFM	Neurofilament medium polypeptide	yes	yes	0	0	1	2	0		1				14.954	14.954	3	0.0011988	5788	DP1141_17	93.494	60.76			1857400	1340	91	1251	2332	3311	3311		1	9606
SNFSNSADDIK	Unmodified	1196.5309	0.53094558	172	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	5	0					1	15.484	15.484	2	8.1316E-05	7089	DP1141_20	135.55	91.914			137550000	1341	172	1252	2333	3312;3313	3312		2	9606
SNPGGFGIAPHCLDEGTVR	Unmodified	1982.9269	0.92685842	367	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	4.33	0.471				2	1	18.123	18.123	2;3	5.099200000000001E-130	11047	DP1141_19	213.69	142.54			1018699999.9999999	1342	367	1253	2334;2335;2336	3314;3315;3316	3315		3	9606
SPAQILQWQVLSNTVPAK	Unmodified	1979.084	0.084010986	19	CON__P02668			yes	yes	0	0	0	4	0				1		21.633	21.633	2	5.6618E-93	16412	DP1141_19	260.73	189.46		+	49230000	1343	19	1254	2337	3317	3317		1	
SPASDTYIVFGEAK	Unmodified	1483.7195	0.71947463	34	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	4	0				1		19.41	19.41	2	1.0765E-160	12985	DP1141_19	221.32	148.99			0	1344	34	1255	2338	3318	3318		1	9606
SPASIEVVKPMEAASAILSQADAR	Oxidation (M)	2456.2581	0.25808854	418	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	1	1	3	0			1			19.887	19.887	3	3.737E-07	13406	DP1141_18	117.6	98.184			0	1345	418	1256	2339	3319	3319	388	1	9606
SPDFTNENPLETR	Unmodified	1518.6951	0.69505079	78	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	0	1					18.598	18.598	2	0.0052231	11576	DP1141_16	99.283	48.191			7138100	1346	78	1257	2340	3320	3320		1	9606
SPGSPPGPELPIETALDDRER	Unmodified	2232.1022	0.10223983	383	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	1	2	0		1				19.804	19.804	3	0.0014879	13405	DP1141_17	108.77	77.252			17578000	1347	383	1258	2341	3321	3321		1	9606
SPILVATAVAAR	Unmodified	1167.6976	0.69755739	38	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3.5	0.5			1	1		18.431	18.431	2	2.9592E-08	11474	DP1141_19	147.4	60.572			243070000	1348	38	1259	2342;2343	3322;3323;3324;3325	3325		4	9606
SPLEVEAQWAVEEGACPR	Unmodified	2026.9418	0.94183978	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2	0		1				20.905	20.905	2	1.0259E-116	15248	DP1141_17	273.08	227.42			17147000	1349	343	1260	2344	3326	3326		0	9606
SPLQSVVVR	Unmodified	983.57638	0.57637963	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0.816	1	1	1			17.059	17.059	2	1.3387E-32	9234	DP1141_17	176.44	119.72			282730000	1350	457	1261	2345;2346;2347	3327;3328;3329;3330;3331	3330		4	9606
SPPPELTDTATSTK	Unmodified	1443.7093	0.70930387	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				15.757	15.757	2	3.2233E-83	7093	DP1141_17	211.63	148.21			35942000	1351	173	1262	2348	3332;3333	3332		2	9606
SPPPELTDTATSTKR	Unmodified	1599.8104	0.8104149	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				15.057	15.057	3	0.020335	5914	DP1141_17	83.633	55.35			0	1352	173	1263	2349	3334	3334		1	9606
SPPSTGSTYGSSQKEESAASGGAAYTK	Unmodified	2605.178	0.17798354	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				15.155	15.155	3	5.374299999999999E-19	6230	DP1141_17	124.88	106.16			23695000	1353	457	1264	2350	3335	3335		1	9606
SPPSVTLFPPSTEELNGNK	Unmodified	2013.0055	0.0054858935	31	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	19.832	19.832	2	0	14222	DP1141_20	320.48	235.66		+	635300000	1354	31	1265	2351	3336	3336		1	
SPQPDPVDTPASTK	Unmodified	1438.694	0.69398816	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.853	14.853	2	2.0577999999999999E-22	5765	DP1141_17	167.84	106.17			9460500	1355	173	1266	2352	3337;3338;3339	3338		3	9606
SPSDSSTASTPVAEQIER	Unmodified	1860.8701	0.87011462	337	Q16643	DBN1	Drebrin	yes	yes	0	0	0	2	0		1				16.657	16.657	2	0.0035066	8584	DP1141_17	126.95	83.32			8988100	1356	337	1267	2353	3340	3340		1	9606
SPSELFAQHIVTIVHHVK	Unmodified	2041.1109	0.11089444	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.5	0.5	2	2				19.32	19.32	3;4	1.5011E-08	12844	DP1141_17	141.6	115.78			206320000	1357	457	1268	2354;2355;2356;2357	3341;3342;3343;3344;3345;3346;3347	3344		7	9606
SPVESTTEPPAVR	Unmodified	1368.6885	0.68850885	200	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	1	0	1					15.428	15.428	2	0.0065305	6299	DP1141_16	87.298	54.978			7204600	1358	200	1269	2358	3348	3348		1	9606
SPYQEFTDHLVK	Unmodified	1462.7092	0.70924429	116	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4.5	0.5				1	1	18.784	18.784	3	2.8187E-07	12009	DP1141_19	148.13	119.75			218480000	1359	116	1270	2359;2360	3349;3350;3351	3349		3	9606
SQDFGNLFSFPSYSQK	Unmodified	1850.8475	0.84752869	273	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	4	0				1		22.171	22.171	2	1.1316E-122	17060	DP1141_19	208.51	165.01			0	1360	273	1271	2361	3352	3352		1	9606
SQEEPKDTFEHDPSESIDEFNK	Unmodified	2607.1249	0.12488534	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	1.5	0.5	1	1				17.573	17.573	3	3.6784E-08	10117	DP1141_17	118.46	102.53			70443000	1361	435	1272	2362;2363	3353;3354;3355	3354		3	9606
SQEEVVSLLR	Unmodified	1158.6245	0.62445203	383	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	2	0		1				18.803	18.803	2	0.020011	12322	DP1141_17	91.265	39.01			41822000	1362	383	1273	2364	3356	3356		1	9606
SQGPLEVAEAAVSQSSGLAAK	Unmodified	1999.0222	0.02219859	437	Q9P0M6	H2AFY2	Core histone macro-H2A.2	yes	yes	0	0	0	4	0				1		21.533	21.533	2	4.3142E-160	16088	DP1141_19	279.19	244.68			17292000	1363	437	1274	2365	3357;3358	3358		2	9606
SQPDPVDTPTSSKPQSK	Unmodified	1797.8745	0.87447172	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				13.689	13.689	3	0.023653	3929	DP1141_17	79.471	49.163			1664500	1364	173	1275	2366	3359	3359		1	9606
SQYEQLAEQNR	Unmodified	1364.6321	0.6320566	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.5	0.5			1	1		15.88	15.88	2	2.1904E-133	7093	DP1141_18	214.05	170.28		+	9350400	1365	25	1276	2367;2368	3360;3361	3360		2	9606
SQYEQLAEQNRK	Unmodified	1492.727	0.72701962	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.57	1.4	2	2	1	1	1	14.834	14.834	2;3	2.2423E-205	5466	DP1141_16	242.97	191.53		+	2236100000	1366	25	1277	2369;2370;2371;2372;2373;2374;2375	3362;3363;3364;3365;3366;3367;3368;3369	3363		6	9606
SREIFLSQPILLELEAPLK	Unmodified	2195.2566	0.25655562	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	1	4	0				1		23	23	3	3.453E-05	18413	DP1141_19	109.22	87			14411000	1367	218;155	1278	2376	3370	3370		1	9606
SRKESYSVYVYK	Unmodified	1507.7671	0.76709352	206	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	2	5	0					1	15.548	15.548	3	0.0072574	7103	DP1141_20	135.94	93.728			112960000	1368	206	1279	2377	3371	3371		1	9606
SRTEAESWYQTK	Unmodified	1484.6896	0.68957148	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	1	3	0			1			15.945	15.945	2	1.7679999999999998E-21	7192	DP1141_18	157.68	85.071		+	0	1369	26	1280	2378	3372	3372		1	9606
SSATSGDIWPGLSAYDNSPR	Unmodified	2079.9498	0.94976193	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		1				20.705	20.705	2	0	14892	DP1141_17	287.54	227.64			12640000	1370	435	1281	2379	3373;3374;3375	3374		3	9606
SSFYPDGGDQETAK	Unmodified	1500.6369	0.63686721	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1.5	0.5	1	1				16.443	16.443	2	0.0043119	8169	DP1141_16	127.51	94.784			249230000	1371	435	1282	2380;2381	3376;3377;3378	3376		3	9606
SSGEIVYCGQVFEK	Unmodified	1601.7396	0.73955814	271	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	18.602	18.602	2	0.0016047	12298	DP1141_20	136.81	104.48			61880000	1372	271	1283	2382	3379;3380	3379		2	9606
SSGPTSLFAVTVAPPGAR	Unmodified	1713.905	0.90498399	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2.4	1.02	1	2	1	1		20.504	20.504	2;3	1.4171999999999998E-93	14581	DP1141_17	258.65	196.02			217270000	1373	267	1284	2383;2384;2385;2386;2387	3381;3382;3383;3384;3385;3386;3387	3384		7	9606
SSGPYGGGGQYFAKPR	Unmodified	1627.7743	0.77430417	100	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		16.348	16.348	2;3	0.00015036	8147	DP1141_19	139.48	110.11			353390000	1374	100	1285	2388;2389	3388;3389;3390	3389		3	9606
SSGSPYGGGYGSGGGSGGYGSR	Unmodified	1909.7827	0.7826966	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	4	0				1		16.069	16.069	2	0	7751	DP1141_19	307.07	285.51			915870000	1375	193	1286	2390	3391	3391		1	9606
SSMSGLHLVK	Unmodified	1057.559	0.559015	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.228	16.228	2	2.5373E-07	7740	DP1141_16	129.42	72.7			879350000	1376	302	1287	2391	3392	3392		1	9606
SSPELEDTATSSK	Unmodified	1350.6151	0.61506914	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			14.786	14.786	2	0.0022173	5598	DP1141_17	141.71	106.44			37075000	1377	173	1288	2392;2393	3393;3394;3395	3394		3	9606
SSPNVANQPPSPGGK	Unmodified	1435.7056	0.7055559	204	P55196	MLLT4	Afadin	yes	yes	0	0	0	2	0		1				14.191	14.191	2	0.00030047	4737	DP1141_17	130.44	109.06			8917900	1378	204	1289	2394	3396	3396		1	9606
SSTATHPPGPAVQLNK	Unmodified	1603.8318	0.83181904	317	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	4	0				1		15.003	15.003	3	0.0017728	6032	DP1141_19	94.781	51.399			54764000	1379	317	1290	2395	3397	3397		0	9606
STELLIR	Unmodified	830.48617	0.48616764	361;349	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	0	4.8	0.4				1	4	17.175	17.175	1;2	2.265E-176	9812	DP1141_20	235.96	108.3			23810000000	1380	361;349	1291	2396;2397;2398;2399;2400	3398;3399;3400;3401;3402	3399		4	9606
STESLQANVQR	Unmodified	1231.6157	0.61567826	140	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					1	14.948	14.948	2	3.4857000000000005E-177	6267	DP1141_20	239.13	179.01			128210000	1381	140	1292	2401	3403;3404	3403		2	9606
STGEAFVQFASK	Unmodified	1270.6194	0.61936665	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	5	0					1	18.609	18.609	2	4.0235E-115	12315	DP1141_20	217.66	155.2			358910000	1382	146	1293	2402	3405;3406	3405		2	9606
STGEAFVQFASQEIAEK	Unmodified	1840.8843	0.88430813	147;205	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	4.5	0.5				1	1	21.323	21.323	2	0	15820	DP1141_19	271.01	211.94			119390000	1383	147;205	1294	2403;2404	3407;3408;3409	3407		3	9606
STGLELETPSLVPVKK	Unmodified	1696.9611	0.96110188	404	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				18.799	18.799	3	0.021559	11961	DP1141_17	104.09	63.003			0	1384	404	1295	2405	3410	3410		1	9606
STITSREIQTAVRLLLPGELAK	Unmodified	2395.3799	0.37985866	206;136	Q16778;P33778;P23527;P06899;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	2	5	0					1	22.344	22.344	3	0.018913	18000	DP1141_20	102.47	28.482			28873000	1385	136;206	1296	2406	3411	3411		1	9606
STLEQKPSKPAAPQVPPK	Unmodified	1902.0575	0.057461885	462	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	2	3	0			1			14.251	14.251	3	0.020305	4817	DP1141_18	59.15	42.164			8225800	1386	462	1297	2407	3412	3412		0	9606
STLVGHDTFTK	Unmodified	1204.6088	0.60880197	33	CON__Streptavidin			yes	yes	0	0	0	3.67	1.41	1	1	2	1	4	18.402	18.402	2;3	4.9218E-172	6360	DP1141_16	232.41	147.79		+	31063000000	1387	33	1298	2408;2409;2410;2411;2412;2413;2414;2415;2416	3413;3414;3415;3416;3417;3418;3419;3420;3421;3422;3423;3424;3425;3426;3427;3428;3429;3430	3413		15	
STNGDTFLGGEDFDQALLR	Unmodified	2054.9545	0.95451296	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.834	21.834	2	0.015852	16747	DP1141_18	79.614	34.998			6769600	1388	159	1299	2417	3431	3431		1	9606
STSTSPAAMLLRR	Acetyl (Protein N-term);Oxidation (M)	1447.7453	0.74531222	416	Q9BRR3	TMEM246	Transmembrane protein 246	yes	yes	1	1	1	5	0					1	14.613	14.613	3	0.027849	5738	DP1141_20	53.967	15.333			0	1389	416	1300	2418	3432	3432	382	1	9606
STYSLSSILTLPSSEYQSHDAYTCEVSHK	Unmodified	3289.5085	0.50850216	29	CON__Q05B55			yes	yes	0	0	0	5	0					2	20.606	20.606	3;4	7.4866E-50	15303	DP1141_20	163.6	150.95		+	182010000	1390	29	1301	2419;2420	3433;3434;3435;3436;3437;3438;3439	3435		7	
SVELEEALPVTTAEGMAK	Acetyl (Protein N-term);Oxidation (M)	1931.9398	0.93977409	388	Q92522	H1FX	Histone H1x	yes	yes	1	1	0	4	0				1		21.633	21.633	2	0.00018109	16116	DP1141_19	99.844	46.764			11535000	1391	388	1302	2421	3440	3440	351	0	9606
SVHSSVPLLNSK	Unmodified	1266.6932	0.6932003	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					16.028	16.028	2;3	1.8706E-98	7206	DP1141_16	242.35	192.93			335440000	1392	302	1303	2422;2423	3441;3442;3443;3444;3445;3446	3443		6	9606
SVHSSVPLLNSKDPIDR	Unmodified	1862.985	0.98502522	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.6	0.8	3	1	1			16.991	16.991	2;3;4	7.7873E-191	8845	DP1141_16	237.07	189.07			2312600000	1393	302	1304	2424;2425;2426;2427;2428	3447;3448;3449;3450;3451;3452;3453;3454;3455;3456	3450		10	9606
SVNELIYKR	Unmodified	1120.6241	0.6240581	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		16.065	16.065	2	2.4764E-06	7706	DP1141_19	125.31	80.561			20475000	1394	126	1305	2429	3457	3457		1	9606
SVTCTYSPALNK	Unmodified	1339.6442	0.6442012	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			16.217	16.217	2	4.1696000000000005E-30	7649	DP1141_18	177.3	125.54			282350000	1395	76	1306	2430	3458	3458		1	9606
SVTEQGAELSNEER	Unmodified	1547.7063	0.70634376	247	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	3	1.58	1	1		1	1	15.629	15.629	2	1.1073999999999999E-268	6627	DP1141_16	263.07	186.9			155650000	1396	247	1307	2431;2432;2433;2434	3459;3460;3461;3462	3459		3	9606
SVTNEDVTQEELGGAK	Unmodified	1675.7901	0.79007339	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.692	16.692	2	0	8440	DP1141_18	293.71	239.95			269720000	1397	82	1308	2435	3463	3463		1	9606
SVVEFLQGYIGVPHGGFPEPFR	Unmodified	2431.2325	0.23246614	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					23.329	23.329	3	0.0085928	18643	DP1141_16	70.072	51.015			3775000	1398	112	1309	2436	3464	3464		1	9606
SWLFGINK	Acetyl (Protein N-term)	1005.5284	0.5283668	433	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	1	0	0	3	0			1			24.509	24.509	1	2.2221E-16	20184	DP1141_18	150.84	80.838			7047300	1399	433	1310	2437	3465	3465		1	9606
SYCAEIAHNVSSK	Unmodified	1464.6667	0.66672755	244	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					2	15.746	15.746	2;3	0.00094958	7451	DP1141_20	121.29	96.512			137380000	1400	244	1311	2438;2439	3466;3467	3466		1	9606
SYFLYSK	Unmodified	906.44872	0.4487195	10	CON__ENSEMBL:ENSBTAP00000024462			yes	yes	0	0	0	3	0			1			18.334	18.334	2	2.5991999999999997E-19	11008	DP1141_18	175.75	104.39		+	267780000	1401	10	1312	2440	3468	3468		0	
SYLENPAFMLLDLK	Oxidation (M)	1668.8433	0.84329493	109	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	1	0	3	0			1			23.057	23.057	2	0.0003748	18188	DP1141_18	116.54	80.221			7253400	1402	109	1313	2441	3469	3469	106	1	9606
TAAENDFVTLKK	Unmodified	1335.7034	0.70343063	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2.5	0.5		1	1			16.238	16.238	3	0.00016348	7915	DP1141_17	120.55	54.856		+	287710000	1403	28	1314	2442;2443	3470;3471	3470		2	9606
TAQIMFQAYGDK	Oxidation (M)	1387.6442	0.6442012	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.84	17.84	2	0.031098	10231	DP1141_16	92.611	61.081			193910000	1404	302	1315	2444	3472	3472	293	1	9606
TAVCDIPPR	Unmodified	1027.5121	0.51206481	93;253;308	P07437;A6NNZ2;P68371;P04350;Q3ZCM7;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	3.8	0.748			2	2	1	15.618	15.618	2	1.9966E-16	6064	DP1141_18	158.07	84.458			671750000	1405	93;253;308	1316	2445;2446;2447;2448;2449	3473;3474;3475;3476;3477;3478;3479;3480;3481	3473		9	9606
TAVVVGTITDDVR	Unmodified	1344.7249	0.72489436	283	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	18.28	18.28	2	1.4788999999999999E-133	11705	DP1141_20	237.93	157.49			170270000	1406	283	1317	2450	3482	3482		0	9606
TCPVQLWVDSTPPPGTR	Unmodified	1909.9356	0.93563219	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.5	0.5			1	1		20.232	20.232	2	3.6318E-105	14258	DP1141_19	255.54	207.02			117270000	1407	76	1318	2451;2452	3483;3484;3485;3486;3487;3488	3486		6	9606
TCVFEKENDPSVMR	Oxidation (M)	1726.7655	0.76545532	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					15.632	15.632	2;3	0.0032809	6562	DP1141_16	94.717	69.268			160710000	1408	302	1319	2453;2454	3489;3490	3490	294	0	9606
TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK	Unmodified	3621.5867	0.58668872	391	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	0	0	3	0			1			23.057	23.057	3	3.1868E-86	18177	DP1141_18	178.06	152.82			17709000	1409	391	1320	2455	3491;3492	3491		2	9606
TDCDIEDDRLAAMFR	Unmodified	1826.7927	0.7927327	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					20.227	20.227	3	0.032809	13931	DP1141_16	114.72	85.23			81047000	1410	302	1321	2456	3493	3493		0	9606
TDCNHIFLNFVPTVIMDPSK	Oxidation (M)	2363.129	0.12898862	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					21.835	21.835	2;3	2.0371E-159	16450	DP1141_16	213.71	200.19			139200000	1411	302	1322	2457;2458	3494;3495;3496;3497	3497	295	4	9606
TDCNHIFLNFVPTVIMDPSK	Unmodified	2347.1341	0.134074	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.701	22.701	3	0.0025545	17802	DP1141_16	87.356	54.806			41695000	1412	302	1322	2459	3498	3498		1	9606
TDCNHIFLNFVPTVIMDPSKIEESVR	Oxidation (M)	3076.4998	0.49979215	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					21.934	21.934	3	8.1806E-05	16733	DP1141_16	86.604	64.284			9565300	1413	302	1323	2460	3499	3499	295	1	9606
TDFGIFR	Unmodified	854.42865	0.42865276	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	1.25		1	1		1	19.799	19.799	2	0.0018083	14132	DP1141_20	124.32	96.217			1270800000	1414	427	1324	2461;2462;2463	3500;3501;3502	3502		2	9606
TDYNASVSVPDSSGPER	Unmodified	1779.7911	0.79113602	216	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	4	0				1		16.936	16.936	2	0.015542	9075	DP1141_19	116.19	90.487			0	1415	216	1325	2464	3503	3503		1	9606
TEDPDLPAFYFDPLINPISHR	Unmodified	2456.2012	0.20122559	355	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					23.145	23.145	3	0.00061942	18482	DP1141_16	109.5	86.471			4183800	1416	355	1326	2465	3504	3504		1	9606
TEELEEESFPER	Unmodified	1493.6522	0.65218292	457	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.67	0.471	1	2				17.656	17.656	2	0	10242	DP1141_17	273.9	212.56			12643000	1417	457	1327	2466;2467;2468	3505;3506;3507	3506		3	9606
TEEVDEEKKMVEEAK	Oxidation (M)	1808.835	0.83497467	441	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	1	2	2	0		1				14.368	14.368	3	0.00053888	4897	DP1141_17	113.37	64.153			7199300	1418	441	1328	2469	3508	3508	409	1	9606
TFEDFVR	Unmodified	912.43413	0.43413207	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.635	18.635	1;2	3.6411000000000005E-71	11818	DP1141_16	195.85	127.45			498220000	1419	302	1329	2470;2471	3509;3510;3511	3511		3	9606
TFQVLGNLYSEGDCTYLK	Unmodified	2106.9932	0.99320665	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		21.534	21.534	2	0.0043744	16299	DP1141_19	140.82	103.89			31161000	1420	405	1330	2472;2473;2474	3512;3513;3514	3514		3	9606
TFTDCFNCLPIAAIVDEK	Unmodified	2112.986	0.98601278	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	3.33	1.25	1		2	2	1	23.211	23.211	2;3	0	18356	DP1141_18	400.06	348.07			293260000	1421	218;155	1331	2475;2476;2477;2478;2479;2480	3515;3516;3517;3518;3519;3520;3521;3522;3523;3524;3525	3519		11	9606
TFYNQAIMSSK	Oxidation (M)	1304.6071	0.60708741	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.25	1.48	1		1	1	1	16.83	16.83	2	9.9616E-05	8738	DP1141_16	136.52	107.34			659160000	1422	427	1332	2481;2482;2483;2484	3526;3527;3528;3529;3530;3531	3526	395	6	9606
TFYNQAIMSSK	Unmodified	1288.6122	0.61217279	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.937	17.937	2	0.0019976	10709	DP1141_19	115.78	44.862			320170000	1423	427	1332	2485;2486	3532;3533	3533		2	9606
TGAIVDVPVGEELLGR	Unmodified	1623.8832	0.88318591	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.034	21.034	2	2.1802E-09	15216	DP1141_18	155.86	105.37			76858000	1424	139	1333	2487	3534	3534		0	9606
TGQPMIHIYLDKETGKPK	Oxidation (M)	2071.0772	0.077211049	270	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	1	2	3.5	0.5			1	1		15.996	15.996	4	0.00098444	7475	DP1141_18	94.922	31.631			566780000	1425	270	1334	2488;2489	3535;3536	3535	241	2	9606
TGQPMIHIYLDKETGKPK	Unmodified	2055.0823	0.082296426	270	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	2	3	0			1			16.692	16.692	4	7.875E-06	8453	DP1141_18	101.9	64.72			195080000	1426	270	1334	2490	3537	3537		0	9606
TGQPMINLYTDR	Oxidation (M)	1423.6766	0.67656396	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	0	3	0			1			17.833	17.833	2	0.0012767	10300	DP1141_18	116.84	82.45			735870000	1427	153	1335	2491	3538	3538	161	1	9606
TGQPMINLYTDRETGK	Oxidation (M)	1838.8833	0.88326227	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3.33	0.471			2	1		16.785	16.785	2;3	5.1835E-58	8604	DP1141_18	187.74	139.77			188960000	1428	153	1336	2492;2493;2494	3539;3540;3541	3539	161	3	9606
TGQPMINLYTDRETGK	Unmodified	1822.8883	0.88834765	153	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3	0			1			17.733	17.733	3	0.034925	10207	DP1141_18	72.523	38.249			458500000	1429	153	1336	2495	3542	3542		1	9606
TGTAEMSSILEER	Oxidation (M)	1438.661	0.66097347	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			16.692	16.692	2	0.00164	8460	DP1141_18	110.86	65.876			56624000	1430	139	1337	2496	3543	3543	147	1	9606
TGTIVVEGHELHDEDIR	Unmodified	1918.9385	0.93846896	168	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				16.896	16.896	3	0.0018996	9035	DP1141_17	101.39	75.429			9833700	1431	168	1338	2497	3544	3544		1	9606
TGTTGQSGAESGTTEPSAR	Unmodified	1793.8028	0.80276334	365	Q7Z5P9	MUC19	Mucin-19	yes	yes	0	0	0	2.33	1.25	1	1		1		20.123	20.123	2	0.0009517	13992	DP1141_17	109.95	42.74			2046199999.9999998	1432	365	1339	2498;2499;2500	3545;3546;3547;3548	3547		4	9606
TGTVSVVCLVNDFYPK	Unmodified	1797.8971	0.89712142	29	CON__Q05B55			yes	yes	0	0	0	4.67	0.471				1	2	22.899	22.899	2;3	5.1747E-10	18492	DP1141_20	193.15	110.07		+	153940000	1433	29	1340	2501;2502;2503	3549;3550;3551;3552;3553	3552		4	
TGVHHYSGNNIELGTACGK	Unmodified	2013.9327	0.93267208	241	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	15.142	15.142	3	0.0014244	6487	DP1141_20	108.25	85.78			74055000	1434	241	1341	2504	3554;3555	3554		2	9606
THNLEPYFESFINNLR	Unmodified	1992.9694	0.96937516	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.75	1.79	2			1	1	22.71	22.71	2;3	9.696600000000001E-105	17744	DP1141_16	180.56	156.57		+	90418000	1435	74	1342	2505;2506;2507;2508	3556;3557;3558;3559;3560;3561;3562	3556		7	9606
THNLEPYFESFINNLRR	Unmodified	2149.0705	0.070486187	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					21.934	21.934	3	0.0064352	16634	DP1141_16	109.48	60.213		+	14236000	1436	74	1343	2509	3563	3563		1	9606
TIAECLADELINAAK	Unmodified	1630.8236	0.82362212	178	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	23.398	23.398	2	0.0029283	19615	DP1141_20	106.49	70.84			54438000	1437	178	1344	2510	3564	3564		1	9606
TIAQDYGVLK	Unmodified	1106.5972	0.59717465	282	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	18.011	18.011	2	0.013281	11268	DP1141_20	97.635	60.077			32227000	1438	282	1345	2511	3565	3565		1	9606
TICSHVQNMIK	Oxidation (M)	1345.6482	0.64824072	149	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	1	0	5	0					1	14.73	14.73	3	0.019575	5959	DP1141_20	72.434	42.9			85196000	1439	149	1346	2512	3566	3566	159	1	9606
TIDLRSHYERLANLR	Unmodified	1856.0017	0.0016783401	358	Q6ZNE5	ATG14	Beclin 1-associated autophagy-related key regulator	yes	yes	0	0	2	1	0	1					18.728	18.728	2	0.0070366	11750	DP1141_16	105.2	43.971			0	1440	358	1347	2513	3567	3567		1	9606
TIEYLQPNPASR	Unmodified	1387.7096	0.70957864	412	Q99962;Q99961	SH3GL2;SH3GL1	Endophilin-A1;Endophilin-A2	yes	no	0	0	0	3.5	0.5			1	1		17.601	17.601	2	0.0003263	10111	DP1141_19	138.66	78.752			10230000	1441	412	1348	2514;2515	3568;3569	3569		2	9606
TIGGGDDSFNTFFSETGAGK	Unmodified	2006.8858	0.88576469	251;413	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			21.234	21.234	2	6.5447E-08	15553	DP1141_18	128.22	105.69			587030000	1442	251;413	1349	2516	3570;3571	3570		2	9606
TIQFVDWCPTGFK	Unmodified	1597.7599	0.75989966	413	Q9BQE3;Q9NY65	TUBA1C;TUBA8	Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	3	0			2			21.824	21.824	2	4.6503000000000005E-68	16201	DP1141_18	197.73	117.75			35798000	1443	413	1350	2517;2518	3572;3573	3572		2	9606
TIQVENSHLILTGAGALNK	Unmodified	1978.0847	0.084739268	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.735	18.735	2;3	0	11928	DP1141_16	282.09	233.97			502060000	1444	302	1351	2519;2520	3574;3575;3576;3577	3576		4	9606
TITLEVEPSDTIENVK	Unmodified	1786.92	0.92002493	104	P62987;P62979;P0CG47;P0CG48	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	1.63	1		1		1	19.434	19.434	2	3.1171999999999997E-276	12959	DP1141_16	263.07	198.43			94655000	1445	104	1352	2521;2522;2523	3578;3579;3580	3578		3	9606
TKDCNVISSK	Unmodified	1150.5652	0.56522259	353	Q6BDS2	UHRF1BP1	UHRF1-binding protein 1	yes	yes	0	0	1	3	2	1				1	14.988	14.988	2	2.5497E-06	6213	DP1141_20	127.68	31.187			8164599999.999999	1446	353	1353	2524;2525	3581;3582	3582		2	9606
TKDHTLVQTIAR	Unmodified	1381.7678	0.76776223	317	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	0			1			15.061	15.061	3	7.1199E-30	5806	DP1141_18	155.88	108.69			16774000	1447	317	1354	2526	3583;3584	3583		2	9606
TKGPAREPQVYVLAPPQEELSK	Unmodified	2436.3013	0.30127398	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	2	3	1.22	1	2	2	2	1	17.755	17.755	3;4	1.2677E-08	10154	DP1141_18	132.67	89.409		+	723360000	1448	11;10	1355	2527;2528;2529;2530;2531;2532;2533;2534	3585;3586;3587;3588;3589;3590;3591;3592;3593;3594	3588		9	
TKVIPYVRYL	Unmodified	1250.7387	0.73869393	17	CON__P02663			yes	yes	0	0	2	4	0				1		19.028	19.028	2	2.4455E-06	12412	DP1141_19	131.03	64.761		+	424800000	1449	17	1356	2535	3595;3596	3596		2	
TKYEHELALR	Unmodified	1258.667	0.66698555	23	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	1	1	0	1					15.128	15.128	3	0.003915	5955	DP1141_16	126.39	81.962		+	36593000	1450	23	1357	2536	3597	3597		1	9606
TLAVSGLGVVGR	Unmodified	1127.6663	0.66625727	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	0		1				18.803	18.803	2	2.7171E-14	12020	DP1141_17	157.99	109.2			47930000	1451	110	1358	2537	3598	3598		1	9606
TLEDPDLNVR	Unmodified	1170.5881	0.58806652	371	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				17.461	17.461	2	2.5373E-07	9846	DP1141_17	129.42	76.785			7403600	1452	371	1359	2538	3599	3599		1	9606
TLETVPLER	Unmodified	1056.5815	0.58152458	134	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		17.228	17.228	2	0.034984	9712	DP1141_19	86.794	18.813			1042399999.9999999	1453	134	1360	2539	3600	3600		1	9606
TLGDFAAEYAK	Unmodified	1184.5714	0.57135383	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				19.104	19.104	2	0.012727	12586	DP1141_17	98.044	66.622			443950000	1454	101	1361	2540	3601;3602;3603	3602		3	9606
TLGILGLGR	Unmodified	898.56	0.56000128	44	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	5	0					1	17.321	17.321	2	0.016695	10198	DP1141_20	91.9	40.113			87743000	1455	44	1362	2541	3604	3604		1	9606
TLLDIDNTR	Unmodified	1059.556	0.55603811	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2.67	1.7	1	1			1	18.252	18.252	2	2.1286E-09	11233	DP1141_17	145.16	62.73		+	1042999999.9999999	1456	27	1363	2542;2543;2544	3605;3606;3607	3606		3	9606
TLLEGEESR	Unmodified	1032.5088	0.50875357	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2	0.816	1	1	1			15.835	15.835	2	5.8673E-31	7158	DP1141_17	170.24	113.06		+	1287200000	1457	74	1364	2545;2546;2547	3608;3609;3610;3611;3612;3613;3614	3611		7	9606
TLNDMRQEYEQLIAK	Unmodified	1850.9196	0.91964777	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1					20.235	20.235	2	0.031738	14219	DP1141_16	98	56.356		+	32125000	1458	27	1365	2548	3615	3615		1	9606
TLNDMRQEYEQLIAK	Oxidation (M)	1866.9146	0.9145624	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	2.5	0.5		1	1			18.36	18.36	2	0.02356	11134	DP1141_18	86.772	49.159		+	75690000	1459	27	1365	2549;2550	3616;3617	3617	23	2	9606
TLRDPSLPLLELQDIMTSVSGR	Oxidation (M)	2456.2945	0.29447405	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.33	0.471	2	1				22.166	22.166	2;3	2.6326999999999997E-44	16865	DP1141_16	173.68	128.54			242120000	1460	302	1366	2551;2552;2553	3618;3619;3620;3621;3622;3623;3624	3619	264	7	9606
TLRDPSLPLLELQDIMTSVSGR	Unmodified	2440.2996	0.29955942	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					24.252	24.252	3	0	20033	DP1141_16	267.66	204.29			16630000	1461	302	1366	2554	3625;3626;3627	3626		3	9606
TLSDYNIQK	Unmodified	1080.5451	0.54513908	104	P62987;P62979;P0CG47;P0CG48;A0A2R8Y422	UBA52;RPS27A;UBB;UBC	Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	2	1				1	16.265	16.265	2	0.00010822	8346	DP1141_20	118.74	74.348			1245000000	1462	104	1367	2555;2556	3628;3629;3630	3630		3	9606
TLYGFGG	Unmodified	713.33844	0.33844077	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	20.21	20.21	1	0.021501	17494	DP1141_20	101.72	101.72			7097599999.999999	1463	234	1368	2557	3631	3631		0	9606
TLYVGNLSR	Unmodified	1021.5556	0.55564418	268;145	Q01085;P31483	TIAL1;TIA1	Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40	no	no	0	0	0	4	0				1		17.528	17.528	2	2.5286E-08	10040	DP1141_19	136.27	84.481			71517000	1464	268;145	1369	2558	3632	3632		1	9606
TMQNLEIELQSQLSMK	2 Oxidation (M)	1923.9282	0.92816355	15	CON__P02533;P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	2	0	1	0	1					19.935	19.935	2	0.031706	13755	DP1141_16	45.257	18.159		+	118540000	1465	15	1370	2559	3633	3633	6;7	1	9606
TMSKSPSLSSR	Oxidation (M)	1195.5867	0.58668632	374	Q8N3C7	CLIP4	CAP-Gly domain-containing linker protein 4	yes	yes	0	1	1	5	0					1	15.078	15.078	2	0.021686	6491	DP1141_20	101.25	21.54			80649000	1466	374	1371	2560	3634	3634	337	1	9606
TNAENEFVTIK	Unmodified	1264.6299	0.62993134	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0.816	1	1	1			17.826	17.826	2	2.0656999999999998E-40	10284	DP1141_16	176.6	122.26		+	1007799999.9999999	1467	74	1372	2561;2562;2563	3635;3636;3637;3638;3639	3635		5	9606
TNAENEFVTIKK	Unmodified	1392.7249	0.72489436	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3.33	1.25		1	1		1	16.111	16.111	3	0.00047569	7425	DP1141_18	87.641	63.365		+	1596999999.9999998	1468	74	1373	2564;2565;2566	3640;3641;3642;3643	3641		3	9606
TPALVNAAVTYSKPR	Unmodified	1586.878	0.87804096	61	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	1	5	0					1	17.759	17.759	3	0.016154	10894	DP1141_20	87.363	69.026			18943000	1469	61	1374	2567	3644	3644		0	9606
TPAQYDASELK	Unmodified	1221.5877	0.58773217	6	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	4	0				1		16.069	16.069	2	0.011846	7682	DP1141_19	98.898	72.793			22876000	1470	6	1375	2568	3645	3645		1	9606
TPATAPVPAR	Unmodified	979.54508	0.5450795	129	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	3	0			1			14.16	14.16	2	0.00017849	4545	DP1141_18	120.87	88.056			3697400	1471	129	1376	2569	3646	3646		1	9606
TPEPVVPTAPEPHPTTSTDQPVTPK	Unmodified	2622.3177	0.31771191	316	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	2	0		1				16.909	16.909	3	1.1023E-10	8941	DP1141_17	123.84	104.09			45083000	1472	316	1377	2570	3647	3647		1	9606
TPEVDDEALEKFDK	Unmodified	1634.7675	0.76754703	20	CON__P02754			yes	yes	0	0	1	4	0				1		18.028	18.028	3	1.3461E-09	10869	DP1141_19	157.33	112.72		+	66748000	1473	20	1378	2571	3648	3648		0	
TPGPGAQSALR	Unmodified	1053.5567	0.55670682	223	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	14.73	14.73	2	2.8712E-14	5862	DP1141_20	155.84	126.68			190100000	1474	223	1379	2572	3649;3650;3651	3650		3	9606
TPPLITDYR	Unmodified	1074.571	0.5709599	110	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1.5	0.5	1	1				18.072	18.072	2	5.5387E-09	10790	DP1141_17	141.52	103.39			171970000	1475	110	1380	2573;2574	3652;3653	3653		2	9606
TPSPSFGGFVSTLSEASMRK	Oxidation (M)	2101.015	0.015004722	295	Q12852	MAP3K12	Mitogen-activated protein kinase kinase kinase 12	yes	yes	0	1	1	5	0					1	21.88	21.88	3	0.034231	17244	DP1141_20	48.883	12.379			0	1476	295	1381	2575	3654	3654	257	1	9606
TPSSWNENPSKDQGWGGGR	Unmodified	2058.9144	0.91437948	451	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	1	2	0		1				16.907	16.907	3	0.0072501	8942	DP1141_17	108.96	76.256			35047000	1477	451	1382	2576	3655	3655		1	9606
TPTSSPASSPLVAK	Unmodified	1341.714	0.71399532	317	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	4	1			1		1	15.614	15.614	2	1.2863E-160	6755	DP1141_18	227.36	148.42			85730000	1478	317	1383	2577;2578	3656;3657;3658;3659;3660;3661;3662	3657		7	9606
TPVQYSQQQNSPQK	Unmodified	1631.7903	0.79034816	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.191	14.191	2	0.0094844	4753	DP1141_17	86.344	61.106			2672200	1479	173	1384	2579	3663	3663		1	9606
TQASLEAIR	Unmodified	987.53491	0.53490874	376	Q8N6Y0	USHBP1	Usher syndrome type-1C protein-binding protein 1	yes	yes	0	0	0	5	0					1	26.175	26.175	1	0.003885	23516	DP1141_20	95.815	13.575			23338000	1480	376	1385	2580	3664	3664		1	9606
TQLQLDER	Unmodified	1001.5142	0.5141733	199	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	4	0				1		15.969	15.969	2	2.2586E-15	7473	DP1141_19	148.99	57.36			25949000	1481	199	1386	2581	3665	3665		1	9606
TQLQQNIEENKER	Unmodified	1628.8118	0.81181188	445	Q9ULJ8	PPP1R9A	Neurabin-1	yes	yes	0	0	1	2	0		1				14.554	14.554	3	0.010213	5131	DP1141_17	91.202	65.078			9544300	1482	445	1387	2582	3666	3666		0	9606
TQTPPVSPAPQPTEER	Unmodified	1733.8584	0.85842773	314	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	3	0			1			15.439	15.439	2	0.0013809	6746	DP1141_18	108.59	60.701			9695900	1483	314	1388	2583	3667;3668	3668		2	9606
TRLEQEIATYR	Unmodified	1378.7205	0.72047768	15;23	CON__P02533;P02533;CON__A2A4G1;CON__Q04695;CON__P19012;P19012;CON__Q6IFX2;CON__Q9QWL7;Q04695;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q9D312;CON__P35900;CON__Q61782;P35900;CON__P08779;P08779	KRT14;KRT15;KRT17;KRT20;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 16	no	no	0	0	1	2	0		2				17.606	17.606	2;3	1.3342E-39	9954	DP1141_17	178.53	110.16		+	40763000	1484	15;23	1389	2584;2585	3669;3670	3670		2	9606
TSASIGSLCADAR	Unmodified	1307.614	0.6139637	208	P60201	PLP1	Myelin proteolipid protein	yes	yes	0	0	0	2	0		1				16.906	16.906	2	7.3004E-20	8961	DP1141_17	175.65	118.1			61608000	1485	208	1390	2586	3671	3671		0	9606
TSPEMDIQNPDDGAR	Oxidation (M)	1660.6999	0.69987817	173	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2.5	0.5		1	1			15.691	15.691	2	0.0040811	6918	DP1141_18	107.97	78.433			9763300	1486	173	1391	2587;2588	3672;3673	3673	172	2	9606
TSQNSELNNMQDLVEDYKK	Oxidation (M)	2271.0325	0.03250528	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	2.2	1.17	2	1	1	1		16.878	16.878	2;3	1.2963000000000001E-63	8810	DP1141_16	185.95	157.98		+	324200000	1487	28	1392	2589;2590;2591;2592;2593	3674;3675;3676;3677;3678	3675	24	5	9606
TSTAPAASPNVR	Unmodified	1170.5993	0.59929991	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				13.707	13.707	2	0.00018794	3715	DP1141_16	118.71	76.836			7009500	1488	112	1393	2594;2595	3679;3680;3681	3679		3	9606
TSTTSSMVASAEQPR	Oxidation (M)	1567.7148	0.71479996	167	Q6NXS1;P41236	PPP1R2P3;PPP1R2	Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2	yes	no	0	1	0	4.5	0.5				1	1	14.251	14.251	2	0.00041269	5114	DP1141_20	133.05	99.089			138340000	1489	167	1394	2596;2597	3682;3683;3684;3685	3684	169	4	9606
TTAENEFVMLK	Unmodified	1281.6275	0.6274885	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					19.127	19.127	2	0.0068862	12317	DP1141_16	104.01	67.567		+	12413000	1490	26	1395	2598	3686	3686		1	9606
TTAENEFVMLKK	Oxidation (M)	1425.7174	0.71736614	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	1	1	1.33	0.471	2	1				16.595	16.595	2;3	0.004252	8468	DP1141_17	100.09	57.843		+	114370000	1491	26	1396	2599;2600;2601	3687;3688;3689;3690	3690	15	3	9606
TTDGYLLR	Unmodified	937.4869	0.48689592	211	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.323	17.323	2	5.5024E-11	9572	DP1141_19	138.37	44.361			57688000	1492	211	1397	2602	3691;3692	3691		2	9606
TTHFVEGGDAGNREDQINR	Unmodified	2114.973	0.97295699	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		14.903	14.903	4	0.0088597	5874	DP1141_19	92.952	63.319			277870000	1493	126	1398	2603	3693;3694	3694		2	9606
TTNFAGILSQGLR	Unmodified	1376.7412	0.74121312	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	3.25	1.48	1		1	1	1	20.917	20.917	2	5.7280000000000004E-294	15917	DP1141_20	270.36	221.94			72732000	1494	101	1399	2604;2605;2606;2607	3695;3696;3697;3698;3699;3700;3701	3700		6	9606
TTPDVIFVFGFR	Unmodified	1397.7343	0.73433683	237	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	5	0					1	23.398	23.398	2	4.2813E-53	19476	DP1141_20	187.22	132.68			37677000	1495	237	1400	2608	3702;3703;3704	3702		3	9606
TTPPQLDTDR	Unmodified	1142.5568	0.5567664	10	CON__ENSEMBL:ENSBTAP00000024462			yes	yes	0	0	0	3	0			1			15.214	15.214	2	0.012666	6042	DP1141_18	98.582	48.542		+	113050000	1496	10	1401	2609	3705	3705		1	
TTPSYVAFTDTER	Unmodified	1486.694	0.69398816	105;108;121	P0DMV8;P0DMV9;P34931;P17066;P48741;P11142;P54652	HSPA1A;HSPA1B;HSPA1L;HSPA6;HSPA7;HSPA8;HSPA2	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3	0			1			18.434	18.434	2	5.1791E-09	11068	DP1141_18	152.04	121.24			1459899999.9999998	1497	105;121;108	1402	2610	3706;3707	3706		2	9606
TTQQIDLQGPGPWGFR	Acetyl (Protein N-term)	1841.906	0.90604662	35	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	1	0	0	4	0				1		22.901	22.901	2	2.147E-24	18240	DP1141_19	209.19	135.69			6906600	1498	35	1403	2611	3708;3709;3710	3709		3	9606
TTQVPQFILDDFIQNDR	Unmodified	2049.0167	0.016719282	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				23.085	23.085	2	8.885400000000001E-192	18349	DP1141_16	250.81	184.55			41951000	1499	288	1404	2612;2613	3711;3712;3713;3714	3711		4	9606
TTVEYLIK	Unmodified	965.54335	0.54334816	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.039	18.039	1;2	1.0764E-10	10747	DP1141_16	132.96	72.602			2747100000	1500	302	1405	2614;2615	3715;3716	3716		2	9606
TVAIYSEQDTGQMHR	Oxidation (M)	1750.7944	0.79444726	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.57	1.4	2	2	1	1	1	15.314	15.314	2;3	4.8945E-08	6428	DP1141_19	121.45	79.482			725420000	1501	112	1406	2616;2617;2618;2619;2620;2621;2622	3717;3718;3719;3720;3721;3722;3723;3724;3725;3726	3725	125	7	9606
TVAIYSEQDTGQMHR	Unmodified	1734.7995	0.79953264	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.33	0.471	2	1				16.138	16.138	2;3	6.6993E-18	7707	DP1141_17	173.68	143.5			726530000	1502	112	1406	2623;2624;2625	3727;3728;3729;3730	3730		3	9606
TVEEVTVER	Unmodified	1060.5401	0.5400537	286	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	2	0		1				15.354	15.354	2	4.6736E-31	6341	DP1141_17	171.53	99.393			21640000	1503	286	1407	2626	3731	3731		1	9606
TVELSIPADPANLDSEAK	Unmodified	1868.9367	0.93673763	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	0.829	2	1	1			24.059	24.059	2	2.9829E-110	13460	DP1141_16	206.66	156.21			841350000	1504	302	1408	2627;2628;2629;2630	3732;3733;3734;3735;3736;3737	3732		5	9606
TVENIKDPLFR	Unmodified	1330.7245	0.72450043	313	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	1	0	1					17.909	17.909	3	5.0379E-05	10389	DP1141_16	126.03	88.426			3409800	1505	313	1409	2631	3738	3738		1	9606
TVGIVGNQPK	Unmodified	1011.5713	0.57129425	82	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			14.914	14.914	2	0.0060812	5689	DP1141_18	98.629	41.908			24785000	1506	82	1410	2632	3739	3739		0	9606
TVIEDMLAMPK	Oxidation (M)	1262.625	0.62504566	202	P54826	GAS1	Growth arrest-specific protein 1	yes	yes	0	1	0	2	0		1				17.269	17.269	2	0.014177	9191	DP1141_17	102.51	37.267			1735500	1507	202	1411	2633	3740	3740	197;198	0	9606
TVLIMELINNVAK	Oxidation (M)	1472.8273	0.82725094	88	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		22.285	22.285	2	0.0013151	16906	DP1141_18	112.36	76.705			14799000	1508	88	1412	2634;2635	3741;3742	3741	66	2	9606
TVPGSTMKMGSLER	2 Oxidation (M)	1524.7276	0.72761325	49	O60241	BAI2	Brain-specific angiogenesis inhibitor 2	yes	yes	0	2	1	1	0	1					15.606	15.606	3	0.026734	6631	DP1141_16	67.519	38.974			0	1509	49	1413	2636	3743	3743	40;41	1	9606
TVTAMDVVYALK	Unmodified	1309.6952	0.69517413	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	4.5	0.5				1	1	21.321	21.321	2	0.00073895	15702	DP1141_19	136.63	92.432			2161200000	1510	234	1414	2637;2638	3744;3745;3746;3747	3744		4	9606
TVTAMDVVYALK	Oxidation (M)	1325.6901	0.69008876	234	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	5	0					2	22.245	22.245	2	0.00049744	14086	DP1141_20	138.66	81.07			3478399999.9999995	1511	234	1414	2639;2640	3748;3749;3750;3751;3752;3753;3754	3750	212	6	9606
TVTAMDVVYALKR	Oxidation (M)	1481.7912	0.79119978	234	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					3	24.808	24.808	2;3	9.5947E-31	12635	DP1141_20	170.47	136.51			3555899999.9999995	1512	234	1415	2641;2642;2643	3755;3756;3757;3758;3759;3760;3761	3759	212	6	9606
TVTAMDVVYALKR	Unmodified	1465.7963	0.79628516	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					10	31.124	31.124	2;3	8.9651E-182	14709	DP1141_20	250.06	175.89			8652200000	1513	234	1415	2644;2645;2646;2647;2648;2649;2650;2651;2652;2653	3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777	3765		15	9606
TVTNAVVTVPAYFNDSQR	Unmodified	1980.9905	0.99050453	108	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	4	1			1		1	19.923	19.923	2	1.91E-13	13517	DP1141_18	182.72	138.42			28627000	1514	108	1416	2654;2655	3778;3779	3778		2	9606
TVVNKDVFRDPALK	Unmodified	1600.8937	0.89369102	214	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	16.606	16.606	3	0.03021	8969	DP1141_20	69.864	29.388			14071000	1515	214	1417	2656	3780	3780		0	9606
TVYQHQKAMKPWIQPK	Oxidation (M)	1998.0509	0.050936719	17	CON__P02663			yes	yes	0	1	2	4	0				1		14.585	14.585	4	0.025645	5447	DP1141_19	56.147	22.84		+	104630000	1516	17	1418	2657	3781	3781	9	1	
TVYQHQKAMKPWIQPK	Unmodified	1982.056	0.056022096	17	CON__P02663			yes	yes	0	0	2	4	0				1		15.487	15.487	4	0.030127	6707	DP1141_19	67.358	43.827		+	372710000	1517	17	1418	2658	3782	3782		0	
TWNDPSVQQDIK	Unmodified	1429.6838	0.68375782	107	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			17.57	17.57	2	1.7534E-29	9818	DP1141_18	161.67	111.95			0	1518	107	1419	2659	3783	3783		1	9606
TYEEIASLVAEQPK	Unmodified	1576.7985	0.79845323	463	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	3.5	0.5			1	1		20.139	20.139	2	0.00055242	13838	DP1141_18	134.75	84.462			30745000	1519	463	1420	2660;2661	3784;3785;3786	3784		3	9606
TYPGVMHSSCPQEMAAVK	2 Oxidation (M)	2023.8802	0.8801675	64	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	2	0	5	0					1	14.853	14.853	3	0.01014	6143	DP1141_20	65.949	45.561			28077000	1520	64	1421	2662	3787;3788	3788	47;48	2	9606
TYQAIKDFNR	Unmodified	1254.6357	0.63568542	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.128	16.128	2;3	2.1243999999999998E-21	7467	DP1141_16	166.07	122.42			210040000	1521	302	1422	2663;2664	3789;3790	3789		1	9606
TYQGSYGFR	Unmodified	1077.488	0.48795855	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.25	1.48	1		1	1	1	16.868	16.868	2	4.8094E-31	8965	DP1141_19	171.38	132.58			696770000	1522	76	1423	2665;2666;2667;2668	3791;3792;3793;3794;3795	3793		5	9606
VAAVGPYIQSSTMPR	Oxidation (M)	1591.8028	0.8028271	307	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	1	0	3	0			1			17.334	17.334	2	0.0038444	9414	DP1141_18	105.46	77.283			7544300	1523	307	1424	2669	3796	3796	299	1	9606
VACIGAWHPAR	Unmodified	1236.6186	0.61859557	162	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	1	0	1					16.594	16.594	3	5.9365E-05	8260	DP1141_16	118.71	69.652			53069000	1524	162	1425	2670	3797;3798	3797		2	9606
VADGMVFGALLPCEECSGQLVFK	Oxidation (M)	2542.1906	0.1906026	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	1	0	2	0		2				22.408	22.408	2;3	1.7682E-18	17459	DP1141_17	140.63	99.66			54651000	1525	101	1426	2671;2672	3799;3800;3801;3802	3799	97	4	9606
VADWTGATYQDKR	Unmodified	1509.7212	0.72120596	43	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	1	2	1	1		1			16.214	16.214	3	0.00018918	7625	DP1141_18	105.36	68.405			0	1526	43	1427	2673;2674	3803;3804	3804		2	9606
VANPSGNLTETYVQDR	Unmodified	1762.8486	0.84859132	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				17.606	17.606	2	0.0003388	9864	DP1141_17	113.25	75.015			36111000	1527	131	1428	2675	3805	3805		1	9606
VAPAQPSEEGPGR	Unmodified	1293.6313	0.63132832	137	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	3	0			1			14.071	14.071	2	3.5758E-82	4410	DP1141_18	195.36	153.93			17085000	1528	137	1429	2676	3806	3806		1	9606
VAPEEHPVLLTEAPLNPK	Unmodified	1953.0571	0.057127534	209;248	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	3.67	1.25		1		1	1	18.311	18.311	3	4.1368E-09	11342	DP1141_19	127.2	36.94			387940000	1529	209;248	1430	2677;2678;2679	3807;3808;3809;3810	3809		4	9606
VAPPGLTQIPQIQK	Unmodified	1488.8664	0.86641364	79	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	2	0		1				19.004	19.004	2	0.0044702	12239	DP1141_17	133.75	102.96			20237000	1530	79	1431	2680	3811	3811		1	9606
VAQLEQVYIR	Unmodified	1217.6768	0.67682195	230	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	18.327	18.327	2	1.1215E-132	11814	DP1141_20	212.58	166.9			0	1531	230	1432	2681	3812	3812		1	9606
VAQPTITDNKDGTVTVR	Unmodified	1813.9534	0.95339074	131	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1.67	0.471	1	2				16.124	16.124	3	0.0035315	7942	DP1141_16	102.65	69.384			22271000	1532	131	1433	2682;2683;2684	3813;3814;3815	3813		3	9606
VASLEESEGNKQDLK	Unmodified	1645.8159	0.81589421	285	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			14.818	14.818	3	0.011767	5500	DP1141_18	100.73	61.564			18081000	1533	285	1434	2685	3816	3816		1	9606
VATVSLPR	Unmodified	841.50215	0.50215205	13	CON__P00761			yes	yes	0	0	0	3.14	1.25	1	1	2	2	1	16.487	16.487	1;2	1.3701E-25	8186	DP1141_19	183.9	45.53		+	40108000000	1534	13	1435	2686;2687;2688;2689;2690;2691;2692	3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843	3838		26	
VATWFNQPAR	Unmodified	1188.604	0.60399136	140	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					1	18.609	18.609	2	6.2213E-16	12340	DP1141_20	159.2	100.04			49300000	1535	140	1436	2693	3844;3845	3844		2	9606
VAVLGASGGIGQPLSLLLK	Unmodified	1792.0822	0.082220072	164	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		23	23	2	0.014318	18438	DP1141_19	81.278	55.386			3809300	1536	164	1437	2694	3846	3846		1	9606
VAYVSFGPHAGK	Unmodified	1231.635	0.63495714	189	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	16.581	16.581	3	0.0081656	8903	DP1141_20	107.06	85.275			0	1537	189	1438	2695	3847	3847		1	9606
VDALMDEINFMK	Oxidation (M)	1440.6629	0.66288773	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	1	0	2	0		1				20.558	20.558	2	0.012074	14641	DP1141_17	95.483	66.01		+	0	1538	26	1439	2696	3848	3848	16	1	9606
VDLLNQEIEFLK	Unmodified	1459.7922	0.79224564	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0.816	1	1	1			22.344	22.344	2	7.1357E-135	17370	DP1141_17	224.75	152.15		+	282250000	1539	28	1440	2697;2698;2699	3849;3850;3851;3852;3853;3854	3853		6	9606
VDNDENEHQLSLR	Unmodified	1567.7227	0.72266253	90	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		15.451	15.451	3	0.0034434	6671	DP1141_19	112.5	90.941			0	1540	90	1441	2700	3855	3855		1	9606
VDNSSLTGESEPQTR	Unmodified	1618.7435	0.74345755	78;115	P05023;P50993;P20648;P13637	ATP1A1;ATP1A2;ATP4A;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	3	1.63	1		1		1	15.236	15.236	2	0.00071194	6217	DP1141_16	138.2	92.544			46994000	1541	78;115	1442	2701;2702;2703	3856;3857;3858	3856		3	9606
VDPEIQNVK	Unmodified	1040.5502	0.55022446	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	2	0		1				15.454	15.454	2	5.8149E-31	6494	DP1141_17	170.3	95.107		+	301770000	1542	28	1443	2704	3859	3859		1	9606
VDWQENDFSK	Unmodified	1266.5517	0.55168102	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.24	18.24	2	6.5976E-08	10994	DP1141_16	138.4	99.433			178670000	1543	302	1444	2705	3860	3860		1	9606
VDWQENDFSKR	Unmodified	1422.6528	0.65279205	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				17.072	17.072	2;3	0.0039529	9240	DP1141_17	106.88	87.273			132560000	1544	302	1445	2706;2707	3861;3862	3862		1	9606
VEAKPEVQSQPPR	Unmodified	1463.7732	0.77324153	449	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	1	3.5	0.5			1	1		13.396	13.396	3	8.271699999999999E-22	3134	DP1141_18	166.7	104.3			5137000	1545	449	1446	2708;2709	3863;3864;3865;3866	3863		4	9606
VEEAEPEEFVVEK	Unmodified	1532.7246	0.72461959	304	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	5	0					1	18.28	18.28	2	7.1416E-98	11761	DP1141_20	208.15	114.55			81974000	1546	304	1447	2710	3867;3868;3869	3868		3	9606
VEGRPGASLPPLDLQALEK	Unmodified	1989.0895	0.089490294	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.17	1.07	2	2	1	1		19.922	19.922	2;3	6.9015E-151	13461	DP1141_18	190.18	133.25			1120000000	1547	112	1448	2711;2712;2713;2714;2715;2716	3870;3871;3872;3873;3874;3875;3876;3877	3876		8	9606
VEILANDQGNR	Unmodified	1227.6208	0.62076364	121	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	4	1			1		1	15.583	15.583	2	8.5251E-53	6679	DP1141_18	186.16	0			1515799999.9999998	1548	121	1449	2717;2718	3878;3879;3880	3878		3	9606
VEIMPPPPKPK	Oxidation (M)	1247.6948	0.6947802	109	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	1	1	3	0			1			14.422	14.422	3	6.8074E-05	4940	DP1141_18	128.35	81.529			32254000	1549	109	1450	2719	3881	3881	107	1	9606
VELCSFSGYK	Unmodified	1188.5485	0.5485099	259	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	18.358	18.358	2	6.3009E-10	11865	DP1141_20	138.4	85.914			0	1550	259	1451	2720	3882	3882		1	9606
VEQATKPSFESGR	Unmodified	1434.7103	0.71030693	158	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	1	4	0				1		14.336	14.336	3	0.0068795	5084	DP1141_19	100.22	68.38			119500000	1551	158	1452	2721	3883	3883		0	9606
VESGDPSLHPPPSPGTPSATPASPPASATPSQR	Unmodified	3176.5374	0.53743452	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2.5	0.5		1	1			16.787	16.787	3	1.4811E-42	8349	DP1141_17	152.64	129.45			736590000	1552	343	1453	2722;2723	3884;3885;3886;3887;3888;3889	3885		6	9606
VETGVLKPGMVVTFAPVNVTTEVK	Oxidation (M)	2530.3717	0.37166174	250	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	4	0				1		19.83	19.83	3	6.799200000000001E-25	13657	DP1141_19	132.36	103.55			78312000	1553	250	1454	2724	3890	3890	223	0	9606
VETPPPHQAGTQLNR	Unmodified	1643.838	0.83796706	429	Q9HCJ0	TNRC6C	Trinucleotide repeat-containing gene 6C protein	yes	yes	0	0	0	2	0		1				14.103	14.103	3	0.0099006	4452	DP1141_17	81.647	47.864			5460800	1554	429	1455	2725	3891	3891		1	9606
VETQFQNGHYDK	Unmodified	1464.6634	0.66335673	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					14.744	14.744	2;3	4.6534E-53	5325	DP1141_16	186.87	137.81			371130000	1555	302	1456	2726;2727	3892;3893	3893		2	9606
VEYLDDR	Unmodified	908.42396	0.42396131	76	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			16.217	16.217	2	0.0017817	7634	DP1141_18	124.34	77.992			30834000	1556	76	1457	2728	3894;3895	3894		2	9606
VEYTLGEESEAPGQR	Unmodified	1663.7689	0.76894402	278	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2	0		1				17.26	17.26	2	6.0543E-07	9481	DP1141_17	128.88	78.407			6154200	1557	278	1458	2729	3896	3896		0	9606
VFAHRMDNSK	Acetyl (Protein N-term);Oxidation (M)	1261.5874	0.58735502	333	Q15760	GPR19	Probable G-protein coupled receptor 19	yes	yes	1	1	1	2	0		1				15.922	15.922	2	0.032822	7263	DP1141_17	60.118	21.365			0	1558	333	1459	2730	3897	3897	313	1	9606
VFASELNAGIIK	Unmodified	1260.7078	0.70778773	439	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	0	1					19.399	19.399	2	0.0012621	12794	DP1141_16	128.86	86.519			0	1559	439	1460	2731	3898	3898		1	9606
VFDYSEYWEGAR	Unmodified	1520.6572	0.65720872	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	1	1		1			20.834	20.834	2	1.5108E-53	14778	DP1141_18	180.36	154.92			261610000	1560	112	1461	2732;2733	3899;3900	3900		1	9606
VFEISPFEPWITR	Unmodified	1619.8348	0.83477916	339	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	4	0				1		23.473	23.473	2	1.3533E-08	19000	DP1141_19	147.74	96.017			2061000	1561	339	1462	2734	3901	3901		1	9606
VFLENVIR	Unmodified	988.57057	0.57056597	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	4.7	0.64			1	1	8	26.885	26.885	1;2	3.4744E-81	13793	DP1141_20	200.96	124.11			19808000000	1562	234	1463	2735;2736;2737;2738;2739;2740;2741;2742;2743;2744	3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912	3904		9	9606
VFLENVIRDAVTYTEHAK	Unmodified	2104.0953	0.095303954	234	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					4	20.58	20.58	2;3	1.4882E-13	18103	DP1141_20	121.72	96.111			509990000	1563	234	1464	2745;2746;2747;2748	3913;3914;3915;3916	3916		3	9606
VFPDKGYSFVR	Unmodified	1313.6768	0.67682195	145	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	1	4	0				1		17.828	17.828	3	0.025937	10697	DP1141_19	91.469	49.785			27151000	1564	145	1465	2749	3917	3917		1	9606
VFQFLNAK	Unmodified	965.53345	0.53345218	259	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	19.366	19.366	2	7.1724E-11	13390	DP1141_20	137.83	86.495			51148000	1565	259	1466	2750	3918	3918		1	9606
VFQPPPPPPPAPSGDAPAEKER	Unmodified	2280.1539	0.15388147	406	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				16.626	16.626	3	1.8458E-08	8380	DP1141_17	128.05	100.35			12378000	1566	406	1467	2751	3919;3920;3921	3920		3	9606
VFSATLGLVDIVK	Unmodified	1360.7966	0.79660274	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2.5	0.5		1	1			21.869	21.869	2	0.0031919	16649	DP1141_17	124.67	91.918			178580000	1567	101	1468	2752;2753	3922;3923;3924	3922		3	9606
VFTTQELVQAFTHAPATLEADR	Unmodified	2444.2336	0.23358835	65	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		22.84	22.84	3	0.0052032	18175	DP1141_19	96.379	74.328			34205000	1568	65	1469	2754	3925	3925		1	9606
VGAGAPVYLAAVLEYLTAEILELAGNAAR	Unmodified	2914.5804	0.58040896	103;77;117	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;P16104;Q8IUE6	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;H2AFX;HIST2H2AB	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2AX;Histone H2A type 2-B	no	no	0	0	0	5	0					1	31.522	31.522	3	2.056E-233	30411	DP1141_20	238.04	213.26			6221100	1569	77;103;117	1470	2755	3926;3927;3928	3927		3	9606
VGAGAPVYMAAVLEYLTAEILELAGNAAR	Oxidation (M)	2948.5317	0.53174421	338	Q16777;Q6FI13	HIST2H2AC;HIST2H2AA3	Histone H2A type 2-C;Histone H2A type 2-A	yes	no	0	1	0	5	0					1	28.344	28.344	3	2.6019000000000004E-62	26362	DP1141_20	174.19	147.95			3707300	1570	338	1471	2756	3929;3930;3931;3932	3929	314	4	9606
VGAGAPVYMAAVLEYLTAEILELAGNAAR	Unmodified	2932.5368	0.53682958	338	Q16777;Q6FI13	HIST2H2AC;HIST2H2AA3	Histone H2A type 2-C;Histone H2A type 2-A	yes	no	0	0	0	5	0					1	30.816	30.816	3	1.2524E-20	29434	DP1141_20	131.97	107.65			1098100	1571	338	1471	2757	3933;3934	3933		2	9606
VGGHAAEYGAEALER	Unmodified	1528.727	0.72701962	14	CON__P01966			yes	yes	0	0	0	5	0					1	16.297	16.297	3	0.0071737	8514	DP1141_20	66.246	1.5715		+	9463400	1572	14	1472	2758	3935	3935		1	
VGGTSDVEVNEK	Unmodified	1232.5885	0.58846046	106	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			14.351	14.351	2	2.3934E-14	4841	DP1141_18	158.47	98.353			6423800	1573	106	1473	2759	3936	3936		1	9606
VGINYQPPTVVPGGDLAK	Unmodified	1823.9781	0.97814893	251;413;252	P68363;P68366;Q9BQE3;Q9NY65	TUBA1B;TUBA4A;TUBA1C;TUBA8	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain;Tubulin alpha-8 chain	no	no	0	0	0	2.5	1.12	1	1	1	1		19.458	19.458	2	6.8737E-29	13002	DP1141_17	169.09	125.79			634380000	1574	251;252;413	1474	2760;2761;2762;2763	3937;3938;3939;3940;3941	3938		5	9606
VGTVIGSNKLEQMPSKEDAIEHFMK	2 Oxidation (M)	2819.3834	0.38336541	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	2	2	2.5	0.5		1	1			16.904	16.904	4	0.00026497	8928	DP1141_17	77.53	57.995			330800000	1575	101	1475	2764;2765	3942;3943	3942	90;91	2	9606
VHIDIGADGR	Unmodified	1051.5411	0.54105675	146	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4.5	0.5				1	1	15.872	15.872	2	2.7218E-31	7765	DP1141_20	175.91	95.445			1810699999.9999998	1576	146	1476	2766;2767	3944;3945	3945		2	9606
VHIEIGPDGR	Unmodified	1091.5724	0.57235688	147;205;196	P31943;P52597;P55795	HNRNPH1;HNRNPF;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	3.75	0.829			2	1	1	16.082	16.082	2;3	8.6215E-54	7481	DP1141_18	190.73	146.28			897550000	1577	147;196;205	1477	2768;2769;2770;2771	3946;3947;3948;3949;3950;3951;3952;3953	3948		8	9606
VHIGQVIMSIR	Oxidation (M)	1267.7071	0.70707622	142	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	1	0	5	0					1	18.011	18.011	2	0.029998	11331	DP1141_20	86.898	55.368			70278000	1578	142	1478	2772	3954	3954	150	0	9606
VHNEGLPAPIVR	Unmodified	1300.7252	0.72516913	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	0	3	1.41	2	2	2	2	2	16.401	16.401	2;3	4.8606E-30	8182	DP1141_19	197.79	169.71		+	6121199999.999999	1579	11;10	1479	2773;2774;2775;2776;2777;2778;2779;2780;2781;2782	3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973;3974;3975;3976;3977;3978;3979	3975		25	
VIDPATATSVDLR	Unmodified	1356.7249	0.72489436	191	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			18.161	18.161	2	0.0020598	11016	DP1141_18	141.89	87.164			86041000	1580	191	1480	2783	3980;3981	3980		2	9606
VIGLQIFNIDTDR	Unmodified	1502.8093	0.80929269	352	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	3	0			1			22.285	22.285	2	6.612599999999999E-22	17077	DP1141_18	167.09	108.5			5955500	1581	352	1481	2784	3982	3982		1	9606
VIGSGCNLDSAR	Unmodified	1247.5928	0.59283433	69	Q6ZMR3;P07864;P00338;P07195	LDHAL6A;LDHC;LDHA;LDHB	L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase A chain;L-lactate dehydrogenase B chain	yes	no	0	0	0	2	0		1				15.775	15.775	2	0.0013909	6739	DP1141_17	115.78	69.653			3503500	1582	69	1482	2785	3983	3983		1	9606
VIMVTGDHPITAK	Oxidation (M)	1396.7384	0.73843593	78;115	P05023;P50993;P20648;Q13733;P54707;P13637	ATP1A1;ATP1A2;ATP4A;ATP1A4;ATP12A;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	1	0	5	0					1	15.484	15.484	3	0.0068561	7105	DP1141_20	88.021	39.833			28499000	1583	78;115	1483	2786	3984	3984	58	1	9606
VITEEEKNFK	Unmodified	1235.6398	0.63976774	140	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	5	0					1	14.794	14.794	3	0.010596	6020	DP1141_20	107.69	76.059			45220000	1584	140	1484	2787	3985	3985		0	9606
VKPAPDETSFSEALLK	Unmodified	1730.9091	0.90906631	296	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	4	0				1		18.628	18.628	3	0.0011629	11962	DP1141_19	99.747	82.751			59835000	1585	296	1485	2788	3986	3986		1	9606
VKPAPDETSFSEALLKR	Unmodified	1887.0102	0.010177341	296	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	2	4	0				1		17.928	17.928	3	5.2636E-10	10692	DP1141_19	164.63	136.28			116790000	1586	296	1486	2789	3987	3987		1	9606
VLAESLGPLR	Unmodified	1053.6182	0.61824444	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	3.5	1.12		1	1	1	1	18.438	18.438	2	4.7614E-80	11491	DP1141_17	201.49	134.49			1223700000	1587	343	1487	2790;2791;2792;2793	3988;3989;3990;3991;3992;3993	3989		4	9606
VLATVTKPVGGDK	Unmodified	1283.7449	0.74490152	272	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	4	0				2		14.5	14.5	2;3	0.022528	5337	DP1141_19	100.55	57.042			111660000	1588	272	1488	2794;2795	3994;3995	3995		2	9606
VLDELTLAR	Unmodified	1028.5866	0.58660996	15;23	CON__P02533;P02533;CON__A2A4G1;CON__Q04695;CON__P19012;P19012;CON__Q6IFX2;CON__Q9QWL7;Q04695;P08727;CON__P08727;CON__P19001;CON__P08779;P08779	KRT14;KRT15;KRT17;KRT19;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 16	no	no	0	0	0	4	0				1		18.828	18.828	2	0.0020524	12076	DP1141_19	151.04	86.468		+	51284000	1589	15;23	1489	2796	3996	3996		0	9606
VLDELTLTK	Unmodified	1030.591	0.59102664	25	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.58	1	1		1	1	18.512	18.512	2	1.2135E-22	11335	DP1141_16	162.25	77.337		+	808700000	1590	25	1490	2797;2798;2799;2800	3997;3998;3999;4000	3997		4	9606
VLDLVEVLVTK	Unmodified	1226.7486	0.74858991	414	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				22.669	22.669	2	6.4709E-30	17881	DP1141_17	170.5	114.95			5291300	1591	414	1491	2801	4001	4001		1	9606
VLEQLTGQTPVFSK	Unmodified	1545.8403	0.84025847	245	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	19.226	19.226	2	2.4701E-83	13202	DP1141_20	226.04	134.17			268250000	1592	245	1492	2802	4002;4003;4004	4003		3	9606
VLGMDPLPSK	Oxidation (M)	1071.5634	0.56343168	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	1	0	2	0		1				16.626	16.626	2	0.014015	8538	DP1141_17	104.01	65.051			43241000	1593	297	1493	2803	4005	4005	261	1	9606
VLHEAEGHIVTCETNTGEVYR	Unmodified	2413.1332	0.13322238	230	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	16.297	16.297	3	0.0018071	8582	DP1141_20	95.429	57.784			30034000	1594	230	1494	2804	4006	4006		1	9606
VLHNAQEVEKEPGQR	Unmodified	1732.8856	0.88564553	188	P49916	LIG3	DNA ligase 3	yes	yes	0	0	1	2.33	0.471		2	1			13.649	13.649	3;4	1.1411E-05	3998	DP1141_17	141.85	95.147			8822400	1595	188	1495	2805;2806;2807	4007;4008;4009;4010;4011;4012	4009		6	9606
VLIANNGIAAVK	Unmodified	1181.7132	0.71320746	302;39	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					17.64	17.64	2	0.03601	10006	DP1141_16	80.219	28.27			335230000	1596	302;39	1496	2808	4013	4013		1	9606
VLIFSQMTR	Unmodified	1093.5954	0.59540051	50	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	2	0		1				19.705	19.705	2	0.013912	13334	DP1141_17	93.162	59.366			9443900	1597	50	1497	2809	4014	4014		1	9606
VLKQVHPDTGISSK	Unmodified	1507.8358	0.83584179	206;136	Q16778;P33778;P23527;P06899;Q8N257;Q96A08;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	1	5	0					2	13.986	13.986	2;3	6.18E-138	4770	DP1141_20	251.75	190.19			273340000	1598	136;206	1498	2810;2811	4015;4016;4017;4018	4018		4	9606
VLLATLSIPITPER	Unmodified	1521.913	0.91302948	311	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				21.604	21.604	2	0.0025204	16167	DP1141_17	104.82	56.733			6956100	1599	311	1499	2812	4019;4020;4021	4019		3	9606
VLNNFISNQK	Unmodified	1175.6299	0.62987176	173	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				17.306	17.306	2	1.1029E-05	9572	DP1141_17	127.68	76.874			16557000	1600	173	1500	2813	4022	4022		0	9606
VLNTNIDGR	Unmodified	1000.5302	0.53015772	225	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	15.605	15.605	2	4.8094E-31	7297	DP1141_20	171.38	87.141			86514000	1601	225	1501	2814	4023	4023		1	9606
VLPLEALVTDAGEVTEAGK	Unmodified	1911.0201	0.020073325	389	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					23.569	23.569	3	2.3286E-05	19078	DP1141_16	98.077	80.145			4991300	1602	389	1502	2815	4024	4024		1	9606
VLSAPPHFHFGQTNR	Unmodified	1706.8641	0.86412223	141	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			17.191	17.191	4	0.015664	9348	DP1141_18	65.472	34.598			17812000	1603	141	1503	2816	4025	4025		1	9606
VLSIGDGIAR	Unmodified	999.57129	0.57129425	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.034	18.034	2	1.3749E-11	10637	DP1141_18	153.04	55.563			117390000	1604	139	1504	2817	4026	4026		1	9606
VLTQPSSVSGSLGQR	Unmodified	1514.8053	0.80526994	9	CON__ENSEMBL:ENSBTAP00000014147			yes	yes	0	0	0	5	0					1	16.746	16.746	2	0	9218	DP1141_20	295.79	235.86		+	942060000	1605	9	1505	2818	4027;4028	4027		2	
VLYDAEISQIHQSVTDTNVILSMDNSR	Oxidation (M)	3063.4819	0.48189348	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1	0	1					20.834	20.834	3	0.00036418	15098	DP1141_16	58.812	34.353		+	79659000	1606	28	1506	2819	4029;4030	4030	25	2	9606
VMCADLGALSVVSGK	Unmodified	1505.7582	0.7581851	348	Q5T7W0	ZNF618	Zinc finger protein 618	yes	yes	0	0	0	1	0	1					19.935	19.935	2	0.012821	13268	DP1141_16	84.198	39.634			5900900	1607	348	1507	2820	4031;4032	4031		2	9606
VMLPPGAQHSDEK	Oxidation (M)	1423.6766	0.67656396	204	P55196	MLLT4	Afadin	yes	yes	0	1	0	2	0		1				14.268	14.268	3	0.0088836	4895	DP1141_17	74.237	39.542			4085800	1608	204	1508	2821	4033	4033	199	1	9606
VMQQQQQTTQQQLPQK	Oxidation (M)	1956.9687	0.96872323	330	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				14.191	14.191	2	0.0035453	4735	DP1141_17	97.163	57.983			14002000	1609	330	1509	2822	4034	4034	312	1	9606
VNTLIRPDGEK	Unmodified	1240.6776	0.67755023	232	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	14.914	14.914	2	8.861E-05	6270	DP1141_20	139.86	80.705			31697000	1610	232	1510	2823	4035	4035		1	9606
VNWATTPSSQK	Unmodified	1217.6041	0.60405094	268;145	Q01085;P31483	TIAL1;TIA1	Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40	no	no	0	0	0	4	0				1		16.067	16.067	2	0.0007	7585	DP1141_19	117.53	71.553			78631000	1611	268;145	1511	2824	4036	4036		1	9606
VNWATTPSSQKK	Unmodified	1345.699	0.69901396	268;145	Q01085;P31483	TIAL1;TIA1	Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40	no	no	0	0	1	4	0				1		14.642	14.642	3	0.030037	5436	DP1141_19	64.439	16.524			0	1612	268;145	1512	2825	4037	4037		1	9606
VPLKVEQANNAR	Unmodified	1337.7415	0.74154747	448	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	1	1.75	0.433	1	3				14.187	14.187	2;3	4.4076E-30	4479	DP1141_16	166.86	111.14			14517000	1613	448	1513	2826;2827;2828;2829	4038;4039;4040;4041	4038		4	9606
VPPAINQFTQALDR	Unmodified	1568.8311	0.83109076	231	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		20.631	20.631	2	0.00408	14725	DP1141_19	129	94.228			29157000	1614	231	1514	2830	4042;4043	4043		2	9606
VPPPPPIAR	Unmodified	942.56509	0.56508666	95	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4.5	0.5				1	1	15.644	15.644	2	4.1133E-08	7035	DP1141_19	132.96	50.698			781850000	1615	95	1515	2831;2832	4044;4045;4046	4044		3	9606
VPQVSTPTLVEVSR	Unmodified	1510.8355	0.83550744	22;21	CON__P02768-1;P02768;CON__P02769	ALB	Serum albumin	no	no	0	0	0	3.5	1.5		1			1	18.609	18.609	2	4.4955E-15	12320	DP1141_20	160.86	106.79		+	36325000	1616	21;22	1516	2833;2834	4047;4048;4049	4048		3	9606
VPTWGPLR	Unmodified	924.51814	0.51813647	297	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				18.904	18.904	2	2.0755E-10	12208	DP1141_17	133.47	84.709			68907000	1617	297	1517	2835	4050;4051	4050		2	9606
VQAERPDTMLGVVCGALHVADVSLR	Oxidation (M)	2708.3738	0.37380377	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					20.235	20.235	3;4	1.0785E-51	14100	DP1141_16	170.51	146.16			390030000	1618	302	1518	2836;2837	4052;4053;4054	4054	296	3	9606
VQALEEANNDLENK	Unmodified	1585.7584	0.75837933	27	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				17.024	17.024	2	1.9818E-268	8931	DP1141_16	269.44	221.74		+	580060000	1619	27	1519	2838;2839	4055;4056;4057;4058	4055		3	9606
VQAQVIQETIVPK	Unmodified	1451.8348	0.83477916	330	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	3	0			1			18.134	18.134	2	6.8834E-21	10784	DP1141_18	180.66	132.24			13541000	1620	330	1520	2840	4059	4059		0	9606
VQDQDLPNTPHSK	Unmodified	1477.7161	0.71612058	290	Q08554	DSC1	Desmocollin-1	yes	yes	0	0	0	1	0	1					14.07	14.07	3	0.0023468	4425	DP1141_16	127.02	85.617			2815900	1621	290	1521	2841	4060	4060		1	9606
VQEAVESMVK	Unmodified	1118.5642	0.56415996	397	Q96C01	FAM136A	Protein FAM136A	yes	yes	0	0	0	5	0					1	16.297	16.297	2	0.00166	8466	DP1141_20	116.37	47.989			23317000	1622	397	1522	2842	4061	4061		1	9606
VQQAELHTGSLPR	Unmodified	1434.7579	0.75792582	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					15.532	15.532	2;3	1.0978999999999999E-21	6598	DP1141_16	165.63	92.398			4894500000	1623	302	1523	2843;2844	4062;4063;4064	4064		3	9606
VQQTVQDLFGR	Unmodified	1289.6728	0.67279921	159	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.234	19.234	2	4.4602E-18	12321	DP1141_18	179.81	86.643			42311000	1624	159	1524	2845	4065	4065		0	9606
VQVQDNEGCPVEALVK	Unmodified	1783.8774	0.87744861	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				18.605	18.605	2	0.0030438	11659	DP1141_17	104.24	67.1			14372000	1625	131	1525	2846	4066;4067	4066		2	9606
VRPDYTAQNLDHGK	Unmodified	1612.7958	0.79576789	257	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	1	5	0					1	14.478	14.478	3	0.0019766	5540	DP1141_20	125.36	89.465			26051000	1626	257	1526	2847	4068	4068		1	9606
VRPGFCFHLCSR	Unmodified	1534.7286	0.72855672	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	1	0	1					17.54	17.54	3	0.0042896	9894	DP1141_16	110.15	85.925			18455000	1627	288	1527	2848	4069	4069		1	9606
VSALNSVHCEHVEDEGESR	Unmodified	2152.9444	0.94435897	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				15.141	15.141	2;3;4	5.5757E-06	6198	DP1141_17	118.55	77.933			1398600000	1628	302	1528	2849;2850;2851;2852	4070;4071;4072;4073;4074;4075;4076;4077	4074		8	9606
VSGVECMIIANDATVK	Oxidation (M)	1721.8328	0.8328066	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		18.031	18.031	2	3.9542E-87	10696	DP1141_18	201.38	154.43			309590000	1629	427	1529	2853;2854	4078;4079;4080;4081;4082	4078	396	5	9606
VSGVECMIIANDATVK	Unmodified	1705.8379	0.83789198	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.635	19.635	2	0.026912	13029	DP1141_18	113.07	74.666			0	1630	427	1529	2855	4083	4083		1	9606
VSITCSGSSSNIGR	Unmodified	1423.6725	0.67254121	31	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	15.746	15.746	2	1.1255E-210	7528	DP1141_20	244.01	183.99		+	164140000	1631	31	1530	2856	4084	4084		1	
VSLEPHQGPGTPESK	Unmodified	1561.7736	0.77363546	322	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	4	0				1		14.695	14.695	3	0.001283	5507	DP1141_19	97.273	58.267			4640500	1632	322	1531	2857	4085	4085		0	9606
VTAIHIDPATHR	Unmodified	1329.7153	0.71533272	184	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					14.996	14.996	3	0.025171	5590	DP1141_16	77.387	55.731			14597000	1633	184	1532	2858	4086	4086		1	9606
VTAISSPQK	Unmodified	929.5182	0.51819605	281	Q05C16	LRRC63	Leucine-rich repeat-containing protein 63	yes	yes	0	0	0	5	0					1	16.297	16.297	2	0.015438	8409	DP1141_20	92.47	36.794			25875000	1634	281	1533	2859	4087	4087		1	9606
VTGEADVEFATHEDAVAAMSK	Unmodified	2176.9947	0.99466321	147	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			1			36.769	36.769	3	0.012861	33498	DP1141_18	67.396	4.657			0	1635	147	1535	2860	4088	4088		1	9606
VTIAQGGVLPNIQAVLLPK	Unmodified	1930.1615	0.16153303	103;338;77	Q93077;Q7L7L0;P04908;Q99878;Q96KK5;Q9BTM1;P20671;P0C0S8;Q16777;Q6FI13	HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST1H2AD;HIST1H2AG;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	4.5	1.08	1	1	1	2	17	28.664	28.664	2;3	7.3667E-175	18198	DP1141_20	193.32	159.43			23117000000	1636	77;103;338	1536	2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879;2880;2881;2882	4089;4090;4091;4092;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;4103;4104;4105;4106;4107;4108;4109;4110;4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147	4111		59	9606
VTIASLPR	Unmodified	855.5178	0.51780212	298	Q12912	LRMP	Lymphoid-restricted membrane protein;Processed lymphoid-restricted membrane protein	yes	yes	0	0	0	5	0					1	16.56	16.56	1	0.0030213	8902	DP1141_20	114.72	28.249			39755000	1637	298	1537	2883	4148	4148		1	9606
VTIMPKDIQLAR	Oxidation (M)	1399.7857	0.78572048	361	Q71DI3;Q16695;P84243;P68431;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C	yes	no	0	1	1	5	0					1	17.077	17.077	3	0.00018059	9745	DP1141_20	118.77	83.172			170540000	1638	361	1538	2884	4149	4149	326	1	9606
VTMQNLNDR	Oxidation (M)	1105.5186	0.51860675	25;15;23	CON__P02533;P02533;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8	KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	no	no	0	1	0	1	0	1					13.995	13.995	2	3.7664E-05	3898	DP1141_16	123.98	82.331		+	3674500	1639	15;23;25	1539	2885	4150	4150	8	1	9606
VTMQNLNDR	Unmodified	1089.5237	0.52369213	25;15;23	CON__P02533;P02533;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8	KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	no	no	0	0	0	2.5	1.5	1			1		15.591	15.591	2	1.7449E-08	6890	DP1141_19	137.9	59.982		+	66595000	1640	15;23;25	1539	2886;2887	4151;4152	4152		2	9606
VTQDELKEVFEDAAEIR	Unmodified	1990.9848	0.98475045	130	P19338	NCL	Nucleolin	yes	yes	0	0	1	3	0			1			21.734	21.734	3	0.0034377	16134	DP1141_18	92.439	59.122			7910500	1641	130	1540	2888	4153	4153		1	9606
VTQVDGNSPVR	Unmodified	1170.5993	0.59929991	181	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	3	0			1			14.388	14.388	2	0.0092043	4853	DP1141_18	101.46	37.253			1590000	1642	181	1541	2889	4154	4154		1	9606
VTVAGGVHISGLHTESAPR	Unmodified	1886.9963	0.99625861	184	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.55	16.55	3	7.1847E-05	8257	DP1141_16	114.58	66.466			28040000	1643	184	1542	2890	4155	4155		1	9606
VTVGDITCTGEGTSK	Unmodified	1523.7137	0.71373732	58	O75569	PRKRA	Interferon-inducible double-stranded RNA-dependent protein kinase activator A	yes	yes	0	0	0	4	0				1		16.858	16.858	2	4.2835E-07	8952	DP1141_19	157.03	120.6			15665000	1644	58	1543	2891	4156	4156		0	9606
VTVLGQPK	Unmodified	840.5069	0.50690308	8	B9A064	IGLL5	Immunoglobulin lambda-like polypeptide 5	yes	yes	0	0	0	3.5	1.5		1			1	15.389	15.389	2	5.1527E-11	6535	DP1141_20	138.48	55.192			98374000	1645	8	1544	2892;2893	4157;4158;4159	4159		3	9606
VTYTPMAPGSYLISIK	Unmodified	1739.9168	0.91679423	131	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				21.275	21.275	2	0.0027268	15774	DP1141_17	121.21	94.458			4321500	1646	131	1545	2894	4160	4160		1	9606
VVDALGNAIDGK	Unmodified	1170.6245	0.62445203	139	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.733	17.733	2	7.48E-82	10152	DP1141_18	205.18	158.75			36288000	1647	139	1546	2895	4161;4162	4162		2	9606
VVDRDSEEAEIIR	Unmodified	1529.7686	0.76855009	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	2	0		2				16.158	16.158	2;3	7.2047E-54	7718	DP1141_17	190.66	122.53			995750000	1648	101	1547	2896;2897	4163;4164	4164		2	9606
VVDRDSEEAEIIRK	Unmodified	1657.8635	0.8635131	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2.67	1.7	2	2			2	15.207	15.207	3;4	0.0014079	6474	DP1141_20	130.2	83.495			552210000	1649	101	1548	2898;2899;2900;2901;2902;2903	4165;4166;4167;4168;4169;4170;4171;4172;4173;4174	4171		8	9606
VVEEAPSIFLDAETRR	Unmodified	1830.9476	0.94757708	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	1	0	1					19.435	19.435	3	0.00076223	12777	DP1141_16	129.17	97.393			26284000	1650	81	1549	2904	4175	4175		1	9606
VVEIAPAAHLDPQLR	Unmodified	1627.9046	0.90459006	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.17	1.07	2	2	1	1		18.327	18.327	2;3	1.0132999999999999E-22	11269	DP1141_17	138.45	99.574			1597899999.9999998	1651	112	1550	2905;2906;2907;2908;2909;2910	4176;4177;4178;4179;4180;4181;4182;4183;4184;4185;4186	4182		10	9606
VVGSEFVQK	Unmodified	991.53385	0.53384611	171	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	3	0			1			16.16	16.16	2	0.00015157	7540	DP1141_18	128.61	65.46			0	1652	171	1551	2911	4187	4187		1	9606
VVHSYEELEENYTR	Unmodified	1766.8111	0.81114318	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	2					17.64	17.64	2;3	1.5931E-42	10183	DP1141_16	214.67	170.24			345130000	1653	112	1552	2912;2913	4188;4189;4190	4188		2	9606
VVMRVDFNVPMK	2 Oxidation (M)	1465.7421	0.7421411	70	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	2	1	1	0	1					14.744	14.744	3	0.006693	5700	DP1141_16	80.916	23.767			32631000	1654	70	1553	2914	4191	4191	49;50	1	9606
VVSEDFLQDVSASTK	Unmodified	1623.7992	0.79918151	101	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.052	20.052	2	8.373699999999999E-186	13744	DP1141_16	283.43	231.43			960860000	1655	101	1554	2915;2916;2917;2918	4192;4193;4194;4195;4196;4197;4198;4199	4192		8	9606
VVWVEESDKR	Unmodified	1245.6354	0.63535107	38	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	1	3	0			2			16.033	16.033	2;3	5.3064E-06	7338	DP1141_18	133.23	74.254			0	1656	38	1555	2919;2920	4200;4201	4201		2	9606
VWDDGIIDPADTR	Unmodified	1471.6943	0.69432251	427	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	19.923	19.923	2	1.0669E-81	13627	DP1141_16	199.33	146.24			1196200000	1657	427	1556	2921;2922;2923;2924;2925	4202;4203;4204;4205;4206;4207;4208;4209;4210;4211	4203		10	9606
VYAEDPYK	Unmodified	983.46001	0.46001246	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			15.718	15.718	2	2.6023E-06	6804	DP1141_18	134.66	74.305			105690000	1658	81	1557	2926	4212	4212		0	9606
VYNVTQHAVGIVVNK	Unmodified	1639.9046	0.90459006	175	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	3	2	1				1	17.495	17.495	3	0.00023067	10404	DP1141_20	142.1	129.76			408370000	1659	175	1558	2927;2928	4213;4214	4214		1	9606
VYNYNHLMPTR	Oxidation (M)	1422.6714	0.671419	214	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	5	0					1	15.605	15.605	3	0.020902	7340	DP1141_20	71.03	38.871			41919000	1660	214	1559	2929	4215	4215	205	0	9606
VYPLSSCCGDK	Unmodified	1284.5479	0.54785797	11	CON__ENSEMBL:ENSBTAP00000024466			yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.117	16.117	2	5.5172E-05	7476	DP1141_18	137.13	108.33		+	486280000	1661	11	1560	2930;2931;2932;2933	4216;4217;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227	4222		12	
WDVLIQQATQCLNR	Unmodified	1743.8726	0.872638	417	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	3	0			1			21.057	21.057	2	2.1914E-160	15135	DP1141_18	218.15	136.12			0	1662	417	1561	2934	4228	4228		1	9606
WELLQQVDTSTR	Unmodified	1474.7416	0.74160705	74	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0.816	1	1	1			20.258	20.258	2	5.3858E-97	14107	DP1141_16	208.33	136.72		+	1709499999.9999998	1663	74	1562	2935;2936;2937	4229;4230;4231;4232;4233	4229		4	9606
WMLAGRPHPTQK	Oxidation (M)	1436.7347	0.73468796	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					14.943	14.943	2;3	0.0060982	5613	DP1141_16	101.71	51.244			517660000	1664	302	1563	2938;2939	4234;4235	4234	297	1	9606
WQEQALEQAPR	Unmodified	1354.663	0.6629628	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	0	2	0		1				17.341	17.341	2	8.0269E-05	9718	DP1141_17	128.86	44.243			36232000	1665	343	1564	2940	4236	4236		1	9606
WQNNLLPSR	Unmodified	1126.5883	0.5883413	220	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	18.373	18.373	2	6.6335E-09	11818	DP1141_20	140.35	89.008			119870000	1666	220	1565	2941	4237;4238	4237		2	9606
WQRPSSPPPFLPAASEEAEPAEGLR	Unmodified	2718.3402	0.34017869	343	Q4KMQ1	TPRN	Taperin	yes	yes	0	0	1	2	0		1				19.705	19.705	3	8.5654E-14	13471	DP1141_17	131.64	97.427			43830000	1667	343	1566	2942	4239;4240	4239		2	9606
WTLLQEQGTK	Unmodified	1202.6295	0.62953741	26;73	P04259;CON__P13647;P13647	KRT6B;KRT5	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					18.79	18.79	2	6.2357E-09	11894	DP1141_16	145.9	50.552		+	49504000	1668	73;26	1567	2943	4241;4242	4242		2	9606
YAASSYLSLTSSDWK	Unmodified	1677.7886	0.78861683	31	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	20.608	20.608	2	0.026427	15288	DP1141_20	86.814	58.087		+	1339500000	1669	31	1568	2944	4243	4243		1	
YAGPEDDAAITLAFSK	Unmodified	1667.8043	0.80426689	273	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	1	0	1					20.335	20.335	2	0.025856	14615	DP1141_16	75.669	26.688			12381000	1670	273	1569	2945	4244	4244		1	9606
YAICSALAASALPALVMSK	Oxidation (M)	1952.0111	0.011105318	154	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	3	0			1			21.985	21.985	2	0.030207	16642	DP1141_18	75.316	53.767			4392000	1671	154	1570	2946	4245	4245	162	1	9606
YCAQDAFFQVK	Unmodified	1375.6231	0.62307182	300	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		19.53	19.53	2	0.016902	13223	DP1141_19	149.72	107.38			88414000	1672	300	1571	2947	4246	4246		0	9606
YDSAPATDGSGTALGWTVAWK	Unmodified	2153.0065	0.006548526	33	CON__Streptavidin			yes	yes	0	0	0	4.29	1.39	1			1	5	23.281	23.281	2;3	1.7081E-296	16973	DP1141_20	199.31	163.26		+	1974899999.9999998	1673	33	1572	2948;2949;2950;2951;2952;2953;2954	4247;4248;4249;4250;4251;4252;4253;4254;4255;4256;4257;4258;4259;4260	4256		14	
YEELQITAGR	Unmodified	1178.5932	0.5931519	74;73	P04264;CON__P04264;P04259	KRT1;KRT6B	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6B	no	no	0	0	0	1	0	1					17.64	17.64	2	2.7687999999999997E-126	9927	DP1141_16	234.81	122.86		+	3237999999.9999995	1674	74;73	1573	2955	4261	4261		0	9606
YEELQQTAGR	Unmodified	1193.5677	0.56766543	26	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	no	no	0	0	0	1	0	1					15.128	15.128	2	9.7116E-177	5962	DP1141_16	239.66	169.14		+	51614000	1675	26	1574	2956	4262;4263;4264	4262		3	9606
YEELQVTVGR	Unmodified	1192.6088	0.60880197	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					17.828	17.828	2	1.7180000000000001E-41	10241	DP1141_16	182.98	88.723		+	37240000	1676	28	1575	2957	4265;4266	4265		2	9606
YFPTQALNFAFK	Unmodified	1445.7343	0.73433683	80	P05141;P12236;P12235;Q9H0C2	SLC25A5;SLC25A6;SLC25A4;SLC25A31	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	yes	no	0	0	0	1.5	0.5	1	1				22.038	22.038	2	0.0039396	16862	DP1141_16	110.87	73.396			175020000	1677	80	1576	2958;2959	4267;4268;4269	4267		3	9606
YGDGGSTFQSTTGHCVHMR	Oxidation (M)	2112.8742	0.87417092	147	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3	0			2			14.722	14.722	3;4	0.0036069	5265	DP1141_18	77.13	59.553			319090000	1678	147	1577	2960;2961	4270;4271	4271	157	2	9606
YGDGGSTFQSTTGHCVHMR	Unmodified	2096.8793	0.8792563	147	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3.5	0.5			1	1		15.65	15.65	4	1.3093E-12	6727	DP1141_18	150.76	140.39			108090000	1679	147	1577	2962;2963	4272;4273	4272		1	9606
YGIICMEDLIHEIYTVGK	Oxidation (M)	2169.0486	0.048613037	126	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	0	4	0				1		21.834	21.834	3	0.00047166	16585	DP1141_19	108.56	74.162			20998000	1680	126	1578	2964	4274	4274	133	1	9606
YGKIETIEVMEDR	Oxidation (M)	1597.7658	0.76577289	193	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	1	4	0				1		16.704	16.704	3	0.0032165	8730	DP1141_19	102.5	57.676			152700000	1681	193	1579	2965	4275	4275	187	1	9606
YGLFPANYVELR	Unmodified	1440.7402	0.74015049	314	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	3	0			1			21.634	21.634	2	0.0098213	16040	DP1141_18	110.53	83.645			11364000	1682	314	1580	2966	4276	4276		1	9606
YGLFPANYVELRQ	Unmodified	1568.7987	0.798728	314	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	1	3	0			1			21.265	21.265	2	0.0031644	15422	DP1141_18	100.72	71.925			5730100	1683	314	1581	2967	4277;4278	4277		2	9606
YGQFSGLNPGGR	Unmodified	1251.5996	0.59963426	218	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		17.728	17.728	2	0.0014445	10442	DP1141_19	158.76	89.157			144440000	1684	218	1582	2968	4279	4279		1	9606
YGQFSGLNPGGRPITPPR	Unmodified	1912.9908	0.9907793	218	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4	0				2		18.028	18.028	2;3	1.196E-48	10834	DP1141_19	177.38	144.94			709110000	1685	218	1583	2969;2970	4280;4281;4282	4280		2	9606
YGTTPPQLDADSSYFLYSK	Unmodified	2152.0001	6.61646E-05	10;11	CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462			no	no	0	0	0	2	0		1				20.804	20.804	2	2.5041E-05	15167	DP1141_17	120.9	92.106		+	21953000	1686	11;10	1584	2971	4283	4283		1	
YICDNQDTISSK	Unmodified	1442.6348	0.63475872	22	CON__P02769			yes	yes	0	0	0	4	0				2		15.433	15.433	2	0.016515	6619	DP1141_19	118.03	53.193		+	0	1687	22	1585	2972;2973	4284;4285	4284		2	
YIFTMLSTLAR	Oxidation (M)	1330.6955	0.69550848	273	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	1	0	2	0		1				20.905	20.905	2	0.0098858	15189	DP1141_17	106.18	54.985			15949000	1688	273	1586	2974	4286	4286	244	1	9606
YIPIQYVLSR	Unmodified	1250.7023	0.70230842	19	CON__P02668			yes	yes	0	0	0	4.5	0.5				1	1	21.021	21.021	2	2.4208E-08	15888	DP1141_20	141.52	86.409		+	117430000	1689	19	1587	2975;2976	4287;4288	4288		2	
YIYDSAFHPDTGEK	Unmodified	1641.7311	0.73110195	424	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		17.728	17.728	3	0.00038416	10266	DP1141_19	135.94	96.059			10646000	1690	424	1588	2977	4289	4289		0	9606
YKITDIIGK	Unmodified	1049.6121	0.61209643	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.309	18.309	2	0.024065	11038	DP1141_16	115.49	65.368			8604400	1691	302	1589	2978	4290	4290		0	9606
YKITDIIGKEEGIGPENLR	Unmodified	2144.1477	0.14773345	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					19.635	19.635	3	1.4346E-12	13198	DP1141_16	217.67	170.78			124060000	1692	302	1590	2979	4291	4291		1	9606
YLAEVAAGDDKK	Unmodified	1278.6456	0.6455814	247	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	1	5	0					1	14.834	14.834	2	0.0033758	6084	DP1141_20	106.62	50.605			0	1693	247	1591	2980	4292	4292		1	9606
YLDGLTAER	Unmodified	1036.5189	0.51892433	28	CON__P35908v2;CON__P35908;P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					17.64	17.64	2	1.4303E-46	10082	DP1141_16	200.16	129.89		+	243020000	1694	28	1592	2981	4293	4293		0	9606
YLGYLEQLLR	Unmodified	1266.6972	0.69722304	16	CON__P02662			yes	yes	0	0	0	4.5	0.5				1	1	22.79	22.79	2	9.3458E-41	18545	DP1141_20	178.99	134.64		+	64208000	1695	16	1593	2982;2983	4294;4295;4296	4295		3	
YLGYLEQLLRLKK	Unmodified	1635.9712	0.97121306	16	CON__P02662			yes	yes	0	0	2	4	0				1		21.132	21.132	3	0.0036155	15540	DP1141_19	129	99.364		+	12534000	1696	16	1594	2984	4297	4297		0	
YLKDVTLQK	Unmodified	1106.6336	0.63356015	128	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	15.476	15.476	2	0.0005246	7062	DP1141_20	135.71	41.597			72984000	1697	128	1595	2985	4298	4298		0	9606
YLSMSRSDIFNDV	Oxidation (M)	1561.7083	0.70825802	351	Q68DH5	LMBRD2	LMBR1 domain-containing protein 2	yes	yes	0	1	1	1	0	1					17.861	17.861	3	0.0328	10361	DP1141_16	61.235	37.407			0	1698	351	1596	2986	4299	4299	322	1	9606
YLSSVSSQETQGGPLAPMTGTIEK	Unmodified	2480.2105	0.21046965	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			19.539	19.539	2	3.3443E-10	13167	DP1141_16	135.69	79.964			43440000	1699	405	1597	2987;2988	4300;4301	4300		2	9606
YLSSVSSQETQGGPLAPMTGTIEK	Oxidation (M)	2496.2054	0.20538427	405	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			18.303	18.303	2	2.4032000000000003E-77	10986	DP1141_18	179.81	148.81			0	1700	405	1597	2989	4302	4302	373	1	9606
YLTVAAIFR	Unmodified	1052.6019	0.6018661	308	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	0	0	5	0					1	21.377	21.377	2	0.0007032	16456	DP1141_20	154.31	70.507			9735900	1701	308	1598	2990	4303	4303		0	9606
YLTVAAVFR	Unmodified	1038.5862	0.58621603	93;253	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	4	0				1		20.43	20.43	2	0.00030392	14378	DP1141_19	133.81	95.007			155900000	1702	93;253	1599	2991	4304	4304		0	9606
YLYLTPQDYK	Unmodified	1302.6496	0.64960415	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.37	19.37	2	3.2993E-41	12708	DP1141_16	214.29	160.32			798020000	1703	302	1600	2992;2993	4305;4306;4307;4308	4305		4	9606
YLYLTPQDYKR	Unmodified	1458.7507	0.75071518	302	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					18.046	18.046	2;3	3.9510999999999996E-22	10744	DP1141_16	168.26	126.38			130200000	1704	302	1601	2994;2995	4309;4310;4311;4312	4312		4	9606
YMACCLLYR	Unmodified	1248.5454	0.54535555	251;413;252	P68363;A6NHL2;P68366;Q9BQE3	TUBA1B;TUBAL3;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	4	0				1		19.228	19.228	2	0.009353	12618	DP1141_19	119.89	95.732			3226400	1705	251;252;413	1602	2996	4313	4313		0	9606
YNAPTSHVTPSVK	Unmodified	1399.7096	0.70957864	51	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	1	0	1					14.735	14.735	2	6.2813E-14	5289	DP1141_16	142.1	110.81			0	1706	51	1603	2997	4314	4314		1	9606
YNILGTNTIMDK	Oxidation (M)	1397.6861	0.68606601	267	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	2	0		1				18.588	18.588	2	0.011647	11543	DP1141_17	100.69	16.072			70872000	1707	267	1604	2998	4315	4315	236	1	9606
YPENFFLLR	Unmodified	1197.6182	0.61824444	218;155	P62136;P62140;P36873	PPP1CA;PPP1CB;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	no	no	0	0	0	2.67	1.25	1		1	1		21.742	21.742	2	3.2268E-08	16555	DP1141_19	134.81	56.662			175920000	1708	218;155	1605	2999;3000;3001	4316;4317;4318;4319;4320	4320		5	9606
YPSPFFVFGEK	Unmodified	1316.6441	0.64412484	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					22.181	22.181	2	0.0069055	16893	DP1141_16	97.965	64.967			19633000	1709	288	1606	3002	4321;4322	4321		2	9606
YPTMAKVAELK	Oxidation (M)	1265.669	0.66895938	294	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	1	1	1	0	1					16.428	16.428	2	0.026529	7794	DP1141_16	88.819	8.6001			76411000	1710	294	1607	3003	4323	4323	256	0	9606
YQAVTATLEEK	Unmodified	1251.6347	0.63468237	163	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	5	0					1	16.819	16.819	2	0.00010477	9343	DP1141_20	155.42	76.304			251690000	1711	163	1608	3004	4324	4324		1	9606
YQGVNLYVK	Unmodified	1082.576	0.57604528	113	P11940;Q4VXU2	PABPC1;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like	yes	no	0	0	0	3	0			1			17.934	17.934	2	0.0075865	10330	DP1141_18	104.37	49.579			16191000	1712	113	1609	3005	4325	4325		1	9606
YQILPLHSQIPR	Unmodified	1463.8249	0.82488317	288	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				18.439	18.439	3	3.4487E-09	11421	DP1141_16	150.09	121.38			86795000	1713	288	1610	3006;3007	4326;4327;4328	4326		3	9606
YQKFALPQYLK	Unmodified	1397.7707	0.77072234	17	CON__P02663			yes	yes	0	0	1	4	0				1		18.928	18.928	3	0.0073698	12365	DP1141_19	89.171	50.934		+	20463000	1714	17	1611	3008	4329	4329		0	
YQKSTELLIR	Unmodified	1249.703	0.7030367	361;349	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	1	5	0					2	16.255	16.255	2;3	1.8987E-12	8387	DP1141_20	145.25	108.82			242190000	1715	361;349	1612	3009;3010	4330;4331;4332	4331		3	9606
YRPGTVALR	Unmodified	1031.5876	0.58761301	361;349	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	1	5	0					2	15.032	15.032	1;2	0.003017	6434	DP1141_20	93.195	45.538			24187000000	1716	361;349	1613	3011;3012	4333;4334	4333		1	9606
YRPGTVALREIR	Unmodified	1429.8154	0.81538112	361;349	Q71DI3;Q16695;P84243;P68431;Q6NXT2;Q5TEC6	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;H3F3C;HIST2H3PS2	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C;Histone H3	no	no	0	0	2	5	0					1	16.058	16.058	3	0.017649	7976	DP1141_20	92.247	49.777			198450000	1717	361;349	1614	3013	4335	4335		0	9606
YSLDPENPTK	Unmodified	1162.5506	0.55061839	128	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	17.068	17.068	2	0.0091001	9523	DP1141_20	104.2	77.309			64668000	1718	128	1615	3014	4336	4336		1	9606
YSLQYYMGLAEELVR	Oxidation (M)	1849.892	0.89203604	112	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1	0	1					23.192	23.192	2	3.247E-84	18220	DP1141_16	198.97	153.14			25407000	1719	112	1616	3015	4337;4338;4339	4337	126	3	9606
YSPSQNSPIHHIPSR	Unmodified	1718.8489	0.84886609	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0.816	1	1	1			15.132	15.132	3;4	0.00011683	6060	DP1141_17	143.93	106.33			56836000	1720	435	1617	3016;3017;3018	4340;4341;4342;4343	4341		4	9606
YSPSQNSPIHHIPSRR	Unmodified	1874.95	0.94997712	435	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		1				14.554	14.554	4	0.0035487	5224	DP1141_17	79.614	55.133			7492100	1721	435	1618	3019	4344	4344		1	9606
YSQVLANGLDNK	Unmodified	1320.6674	0.66737948	225	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	17.288	17.288	2	2.8099000000000002E-30	9820	DP1141_20	173.64	123.93			56875000	1722	225	1619	3020	4345	4345		1	9606
YSSAGTVEFLVDSK	Unmodified	1501.73	0.73003931	81	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.837	19.837	2	0.0020267	13330	DP1141_18	161.19	101.26			26141000	1723	81	1620	3021	4346	4346		1	9606
YSVDIPLDK	Unmodified	1048.5441	0.54407645	214	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	18.609	18.609	2	0.0076381	12291	DP1141_20	101.25	64.094			85370000	1724	214	1621	3022	4347	4347		1	9606
YVASYLLAALGGNSSPSAK	Unmodified	1867.968	0.96797818	84	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	22.081	22.081	2	0.0071365	17725	DP1141_20	87.863	38.882			22319000	1725	84	1622	3023	4348;4349	4349		2	9606
YVELFLNSTAGASGGAYEHR	Unmodified	2141.0178	0.017781914	147	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			1			19.434	19.434	3	5.097399999999999E-265	12710	DP1141_18	250.26	215.34			53850000	1726	147	1623	3024	4350;4351	4350		2	9606
YYVTIIDAPGHR	Unmodified	1403.7197	0.7197494	250	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	2.67	1.25	1		1	1		18.134	18.134	3	3.8574999999999996E-22	10656	DP1141_18	141.89	121.3			118650000	1727	250	1624	3025;3026;3027	4352;4353;4354	4353		2	9606
