Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Intensity	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAAAAAGAAGGR	Acetyl (Protein N-term)	1239.632	0.63199703	560	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	1	0	0	4	0				1		19.461	19.461	2	1.0372E-15	14312	DP1145_14	167.93	120.28			20498000	0	560	0	0	0	0		1	9606
AAAAAAGAASGLPGPVAQGLK	Acetyl (Protein N-term)	1789.9686	0.96864688	641	Q96P70	IPO9	Importin-9	yes	yes	1	0	0	2	0		1				20.466	20.466	2	0.00084153	17072	DP1145_12	100.38	75.911			6239300	1	641	1	1	1;2	2		2	9606
AAAAEAR	Unmodified	658.33984	0.33983775	705	Q9H8L6	MMRN2	Multimerin-2	yes	yes	0	0	0	5	0					2	16.445	16.445	1	0.0055592	8280	DP1145_15	104.94	18.01			1537499999.9999998	2	705	2	2;3	3;4	3		1	9606
AAAAELSLLEK	Acetyl (Protein N-term)	1156.634	0.63395409	58	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	1	0	0	5	0					1	21.962	21.962	2	0.010574	17249	DP1145_15	74.92	31.837			22613000	3	58	3	4	5	5		1	9606
AAAANSGSSLPLFDCPTWAGKPPPGLHLDVVK	Acetyl (Protein N-term)	3314.6758	0.67578268	439	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	1	0	1	4	0				1		21.491	21.491	3	4.1875E-13	17332	DP1145_14	109.69	93.076			10188000	4	439	4	5	6	6		1	9606
AAAAVVVPAEWIK	Acetyl (Protein N-term)	1365.7656	0.76563696	592	Q8NI27	THOC2	THO complex subunit 2	yes	yes	1	0	0	2	0		1				22.889	22.889	2	0.013149	20400	DP1145_12	66.19	29.872			2162200	5	592	5	6	7;8	7		2	9606
AAAIGIDLGTTYSCVGVFQHGK	Unmodified	2264.126	0.12595216	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			19.853	19.853	3	0.042955	14760	DP1145_13	45.844	30.259			136890000	6	156	6	7	9	9		1	9606
AAALVLQTIWGYK	Unmodified	1432.8078	0.80783613	71	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	2	0		1				21.654	21.654	2	0.0028265	18739	DP1145_12	96.89	53.378			2956000	7	71	7	8	10	10		1	9606
AADEEAFEDNSEEYIRR	Unmodified	2042.8817	0.88174194	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	2	0		1				17.375	17.375	3	0.0095913	12088	DP1145_12	80.746	70.5			24735000	8	322	8	9	11	11		1	9606
AADPPAENSSAPEAEQGGAE	Unmodified	1896.7973	0.79734361	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.306	15.306	2	0.0036216	8018	DP1145_14	115.12	92.334			17895000	9	390	9	10	12	12		1	9606
AADTQVSETLKR	Acetyl (Protein N-term)	1359.6994	0.69940789	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	1	1	0	1					16.28	16.28	2	2.7241E-07	8430	DP1145_11	148.32	92.308			34247000	10	605	10	11	13;14	14		2	9606
AAESVSKPDVSEEAPGPSK	Unmodified	1883.9113	0.91125116	682	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	1	4	0				1		14.687	14.687	3	0.001007	6794	DP1145_14	126.19	102.35			18290000	11	682	11	12	15	15		1	9606
AAFDDAIAELDTLSEESYK	Unmodified	2086.9583	0.95826093	357	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				1		23.303	23.303	2	0.011038	19884	DP1145_14	103.3	76.585			1561400	12	357	12	13	16	16		1	9606
AAFQYGIK	Unmodified	896.4756	0.47560295	443	Q13123	IK	Protein Red	yes	yes	0	0	0	3	0			1			16.677	16.677	2	0.031955	10626	DP1145_13	86.512	45.285			79082000	13	443	13	14	17	17		1	9606
AAGTAAALAFLSQESR	Acetyl (Protein N-term)	1604.8158	0.81583463	85	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	3.25	1.48	1		1	1	1	23.662	23.662	2	0	20342	DP1145_14	317.81	250.89			512200000	14	85	14	15;16;17;18	18;19;20;21;22;23;24	22		7	9606
AAGTLYTYPENWR	Acetyl (Protein N-term)	1582.7416	0.74160705	223	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	2	1	1		1			21.533	21.533	2	0.0081853	17807	DP1145_13	104.22	43.703			2544100	15	223	15	19;20	25;26	26		1	9606
AAGVEAAAEVAATEIK	Acetyl (Protein N-term)	1541.7937	0.7937022	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	4	0				1		22.772	22.772	2	4.8849999999999995E-88	19115	DP1145_14	224.25	168.7			4768300	16	310	16	21	27;28	27		2	9606
AAGVNVEPFWPGLFAK	Unmodified	1701.8879	0.88787736	125	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	22.391	22.391	2	4.7237E-43	17733	DP1145_15	193.62	168.28			221710000	17	125	17	22	29;30	29		2	9606
AAIDWFDGKEFHGNIIK	Unmodified	1959.9843	0.98429694	610	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	0	1	3	0			1			19.48	19.48	3	0.0016098	14755	DP1145_13	131.86	99.295			105660000	18	610	18	23	31	31		1	9606
AALAPLPPLPAQFK	Acetyl (Protein N-term)	1474.8548	0.85478632	714	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	yes	yes	1	0	0	4	0				1		22.934	22.934	2	0.0071962	19356	DP1145_14	74.173	50.795			1740000	19	714	19	24	32;33	32		2	9606
AALGPSSQNVTEYVVR	Acetyl (Protein N-term)	1731.8792	0.87916317	244	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	1	0	0	4	0				1		20.561	20.561	2	6.2822E-11	15947	DP1145_14	164.81	129.3			21231000	20	244	20	25	34	34		1	9606
AALGVLESDLPSAVTLLK	Acetyl (Protein N-term)	1838.0401	0.040080486	587	Q8NEJ9	NGDN	Neuroguidin	yes	yes	1	0	0	4	0				1		25.681	25.681	2	9.6912E-18	22912	DP1145_14	173.76	127.88			3675900	21	587	21	26	35;36	36		2	9606
AALLMPR	Acetyl (Protein N-term);Oxidation (M)	828.45276	0.45275902	330	P57771	RGS8	Regulator of G-protein signaling 8	yes	yes	1	1	0	3	0			1			17.178	17.178	2	0.037154	11157	DP1145_13	47.045	10.017			8273400	22	330	22	27	37	37	247	1	9606
AALSALESFLK	Unmodified	1148.6441	0.64412484	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.529	21.529	2	0.006969	16371	DP1145_11	108.43	77.011			0	23	400	23	28	38	38		1	9606
AALVLEDGSVLR	Acetyl (Protein N-term)	1283.7085	0.70851601	225	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	1	0	0	1	0	1					22.841	22.841	2	0.00075701	18259	DP1145_11	99.815	17.528			4855600	24	225	24	29	39	39		1	9606
AAPEEPQQRPPEAVAAAPAGTTSSR	Unmodified	2488.2306	0.23062824	632	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	4	0.816			1	1	1	15.226	15.226	3	3.2953E-09	8115	DP1145_13	143	119.31			431460000	25	632	25	30;31;32	40;41;42;43;44;45;46	40		7	9606
AAQGEPQVQFK	Acetyl (Protein N-term)	1243.6197	0.619701	371	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	4	0				1		17.983	17.983	2	0.025367	12065	DP1145_14	86.898	59.074			0	26	371	26	33	47	47		1	9606
AASDIAMTELPPTHPIR	Oxidation (M)	1834.9247	0.92473315	357	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	0	1	0	1					16.567	16.567	3	0.0058611	8706	DP1145_11	81.448	45.155			13948000	27	357	27	34	48	48	262	1	9606
AASVHTVGEDTEETPHR	Unmodified	1834.8446	0.84456858	654	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2.5	0.5		1	1			13.622	13.622	4	0.0015464	5886	DP1145_13	93.738	70.753			2225400	28	654	28	35;36	49;50	50		2	9606
AATASAGAGGIDGKPR	Acetyl (Protein N-term)	1440.7321	0.732105	416	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	2.5	1.5	1			1		15.112	15.112	2	5.4456E-06	6600	DP1145_11	155.88	90.383			68021000	29	416	29	37;38	51;52;53	51		3	9606
AATGEEVSAEDLGGADLHCR	Unmodified	2056.912	0.91199621	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		16.87	16.87	2;3	2.1413E-18	10841	DP1145_13	224.64	184.04			5316400000	30	710	30	39;40;41;42	54;55;56;57	55		4	9606
AATLAQELEK	Unmodified	1072.5764	0.57643921	479	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	2	0		1				16.946	16.946	2	4.0285E-05	11422	DP1145_12	134.77	67.272			0	31	479	31	43	58	58		1	9606
AAVATFLQSVQVPEFTPK	Unmodified	1932.0357	0.03566381	206	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				21.753	21.753	2	0.0062119	18825	DP1145_12	135.04	76.87			0	32	206	32	44	59	59		1	9606
AAVENLPTFLVELSR	Unmodified	1657.9039	0.90392136	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	3	0.816		1	1	1		22.787	22.787	2	3.5251E-06	20329	DP1145_12	153.49	96.32			12570000	33	484	33	45;46;47	60;61;62;63;64	62		5	9606
AAVESLGFILFR	Unmodified	1321.7394	0.73942221	652	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	2	0		1				22.511	22.511	2	0.00019927	19917	DP1145_12	118.18	67.571			2226900	34	652	34	48	65;66	66		2	9606
AAVGEEKDINTFVGTPVEK	Unmodified	2003.0211	0.021135958	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					17.361	17.361	3	8.4605E-152	10127	DP1145_11	250.38	216			63462000	35	278	35	49	67	67		0	9606
AAVLQQVLER	Acetyl (Protein N-term)	1167.6612	0.66117189	169	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1.5	0.5	1	1				23.482	23.482	2	1.6173E-06	19115	DP1145_11	131.03	78.246			8416400	36	169	36	50;51	68;69;70;71	68		4	9606
AAVPSGASTGIYEALELR	Unmodified	1803.9367	0.93667805	133	P06733;P13929;P09104	ENO1;ENO3;ENO2	Alpha-enolase;Beta-enolase;Gamma-enolase	yes	no	0	0	0	3	0			1			20.379	20.379	2	0.0043794	16241	DP1145_13	105.03	71.268			85234000	37	133	37	52	72	72		1	9606
AAVVTSPPPTTAPHK	Unmodified	1472.7987	0.798728	246	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	2	0		1				14.249	14.249	3	0.0020793	7077	DP1145_12	113.52	84.278			2034300	38	246	38	53	73	73		1	9606
AAYFGIYDTAK	Unmodified	1218.5921	0.59208927	122	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	2.5	1.5	1			1		18.76	18.76	2	0.00061516	13260	DP1145_14	109.44	70.186			140860000	39	122	39	54;55	74;75	75		2	9606
AAYFGVYDTAK	Unmodified	1204.5764	0.57643921	168	P12236;P12235	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	yes	no	0	0	0	4	0				1		18.06	18.06	2	0.0007657	12247	DP1145_14	108.43	89.455			46855000	40	168	40	56	76	76		1	9606
ACTAQSLGNLLDMMYR	2 Oxidation (M)	1874.8325	0.83248903	507	Q16854	DGUOK	Deoxyguanosine kinase, mitochondrial	yes	yes	0	2	0	4	0				1		23.892	23.892	2	0.0020813	20631	DP1145_14	100.55	43.022			5245700	41	507	41	57	77;78	78	385;386	2	9606
ADATNVNNWHWTER	Unmodified	1712.7655	0.76553039	102	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		17.559	17.559	3	0.026699	11415	DP1145_14	88.163	49.974			76849000	42	102	42	58	79	79		0	9606
ADEAYLIGR	Unmodified	1006.5084	0.50835964	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				17.368	17.368	2	3.0799E-86	12014	DP1145_12	224.43	147.65			96643000	43	164	43	59;60	80;81;82;83	82		3	9606
ADFAQACQDAGVR	Unmodified	1407.6201	0.62011171	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		16.375	16.375	2	4.2327E-11	8482	DP1145_11	163.84	129.63			816020000	44	164	44	61;62;63	84;85;86;87	84		4	9606
ADGELNVDSLITR	Acetyl (Protein N-term)	1443.7205	0.72053726	351	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	4	0				1		21.891	21.891	2	0.00044301	17942	DP1145_14	101.93	51.888			30985000	45	351	45	64	88	88		1	9606
ADGQVAELLLR	Acetyl (Protein N-term)	1225.6667	0.6666512	768	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	1	0	0	3	0			1			22.809	22.809	2	5.2214E-23	19556	DP1145_13	191.4	97.091			0	46	768	46	65	89	89		1	9606
ADGYEPPVQESV	Unmodified	1289.5776	0.57756142	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.26	18.26	1	0.0001959	12334	DP1145_14	112.85	83.684			13140000	47	339	47	66	90	90		1	9606
ADHSFSDGVPSDSVEAAK	Acetyl (Protein N-term)	1859.8174	0.81735077	657	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	1	0	0	3	0			1			17.495	17.495	2	1.1871E-27	11741	DP1145_13	193.28	161.25			0	48	657	48	67	91	91		1	9606
ADIGVAMGIAGSDVSK	Oxidation (M)	1505.7396	0.73955814	119;173	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	1	0	1	0	1					17.067	17.067	2	0.0067205	9782	DP1145_11	113.95	86.518			25105000	49	119;173	49	68	92	92	78	1	9606
ADKDYHFKVDNDENEHQLSLR	Unmodified	2572.1942	0.19424273	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4.11	0.567			1	6	2	15.984	15.984	2;3;4;5	2.3404000000000002E-63	8794	DP1145_14	206.8	178.18			35059000000	50	134	50	69;70;71;72;73;74;75;76;77	93;94;95;96;97;98;99;100;101;102;103;104	95		12	9606
ADKMDMSLDDIIK	Acetyl (Protein N-term);2 Oxidation (M)	1567.711	0.71096013	564	Q86V81	ALYREF	THO complex subunit 4	yes	yes	1	2	1	4	0				1		18.715	18.715	2	0.013537	13192	DP1145_14	72.29	25.884			0	51	564	51	78	105	105	424;425	1	9606
ADLDKLNIDSIIQR	Acetyl (Protein N-term)	1654.889	0.88899957	252	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	4.5	0.5				1	1	21.533	21.533	2	0	17348	DP1145_14	331.92	259.82			519280000	52	252	52	79;80	106;107	106		0	9606
ADLEMQIESLTEELAYLKK	Oxidation (M)	2239.1294	0.12936578	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	1	3	1.41	1		2		1	23.143	23.143	2;3	5.468E-92	20085	DP1145_13	224.36	177.25		+	32884000	53	18	53	81;82;83;84	108;109;110;111;112	109	12	5	9606
ADLINNLGTIAK	Unmodified	1241.698	0.69795133	143;138;519	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	3	0			1			18.979	18.979	2	0.029054	14089	DP1145_13	71.614	21.899			84720000	54	143;138;519	54	85	113	113		1	9606
ADLLGSILSSMEKPPSLGDQETR	Acetyl (Protein N-term);Oxidation (M)	2501.2319	0.23193337	80	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	1	1	1	4	0				2		23.102	23.102	2;3	3.3885999999999997E-65	19607	DP1145_14	206.49	172.69			7792900	55	80	55	86;87	114;115;116;117	117	57	4	9606
ADQLYLENIDEFVTDQNK	Acetyl (Protein N-term)	2196.0223	0.02225817	490	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	1	0	0	3	0			1			24.347	24.347	2	4.2585E-11	21815	DP1145_13	161.49	135.06			4402100	56	490	56	88	118;119	118		2	9606
ADRDESSPYAAMLAAQDVAQR	Oxidation (M)	2280.0441	0.044073019	358	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	1	5	0					1	17.204	17.204	3	5.7865E-05	10292	DP1145_15	133.65	107.73			84118000	57	358	57	89	120;121	120	264	2	9606
ADRDESSPYAAMLAAQDVAQR	Unmodified	2264.0492	0.049158397	358	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	18.992	18.992	3	0.010389	13101	DP1145_15	72.564	49.537			65511000	58	358	57	90	122	122		1	9606
ADTLDPALLRPGR	Unmodified	1393.7678	0.76776222	276	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	1	3	0			1			17.478	17.478	3	0.0055841	11730	DP1145_13	82.494	49.495			17330000	59	276	58	91	123	123		1	9606
ADTLTDEINFLR	Unmodified	1406.7042	0.70415892	6	CON__P48668;CON__P04259;CON__P02538;P48668;P02538;P04259	KRT6C;KRT6A;KRT6B	Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B	yes	no	0	0	0	1	0	1					21.008	21.008	2	0.019105	15510	DP1145_11	77.662	29.571		+	26545000	60	6	59	92	124	124		1	9606
ADTQTYQPYNKDWIK	Unmodified	1869.8897	0.88972785	405	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	1	5	0					2	17.17	17.17	2;3	8.1876E-104	10269	DP1145_15	269.81	201.3			423210000	61	405	60	93;94	125;126	126		2	9606
ADVEEEFLAFR	Unmodified	1324.6299	0.62993134	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.091	21.091	2	7.5881E-05	17914	DP1145_12	133.13	101.37			30483000	62	278	61	95	127;128	127		2	9606
ADVEEEFLALR	Unmodified	1290.6456	0.6455814	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				20.799	20.799	2	0.0058644	17510	DP1145_12	96.665	61.513			35319000	63	278	62	96	129	129		1	9606
ADVFHAYLSLLK	Unmodified	1375.75	0.7499869	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1.67	0.471	1	2				21.618	21.618	2;3	3.3666E-11	18627	DP1145_12	160.18	62.217			27938000	64	566	63	97;98;99	130;131;132;133	131		4	9606
AEAEAQAEELSFPR	Unmodified	1546.7264	0.72635092	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		18.09	18.09	2;3	9.551100000000001E-55	12353	DP1145_14	204.32	146.08			1819799999.9999998	65	164	64	100;101;102;103;104	134;135;136;137;138;139;140	139		6	9606
AEAGAGLSETVTETTVTVTTEPENR	Acetyl (Protein N-term)	2604.2402	0.24024945	75	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	1	0	0	5	0					1	21.387	21.387	2	0.0010149	16339	DP1145_15	117.53	84.225			0	66	75	65	105	141	141		1	9606
AEAGDNLGALVR	Unmodified	1184.6149	0.61494998	296	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.57	17.57	2	3.2254E-06	11436	DP1145_14	140.11	92.153			28852000	67	296	66	106;107	142;143	143		2	9606
AEAGPEGVAPAPEGEKK	Unmodified	1635.8104	0.8104149	788	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	1	2	0		1				13.967	13.967	3	0.036405	6926	DP1145_12	102.39	65.861			4436100	68	788	67	108	144	144		0	9606
AEAPGQPLKPPEGQEGFSQR	Unmodified	2122.0443	0.044331016	746	Q9UEG4	ZNF629	Zinc finger protein 629	yes	yes	0	0	1	2	0		1				16.179	16.179	3	0.028322	10220	DP1145_12	79.462	64.669			27202000	69	746	68	109	145	145		1	9606
AEDKEWMPVTK	Unmodified	1332.6384	0.63838754	182	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	4	0				1		16.025	16.025	3	0.0091706	8951	DP1145_14	93.766	55.745			0	70	182	69	110	146	146		1	9606
AEEEFNIEK	Unmodified	1107.5084	0.50841922	250	P36543;Q96A05	ATP6V1E1;ATP6V1E2	V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2	yes	no	0	0	0	1	0	1					16.465	16.465	2	0.021222	8475	DP1145_11	85.161	49.543			8696100	71	250	70	111	147	147		1	9606
AEEGIAAGGVMDVNTALQEVLK	Acetyl (Protein N-term);Oxidation (M)	2272.1257	0.12567738	216	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	1	0	5	0					2	24.342	24.342	2;3	3.8114E-39	20356	DP1145_15	188.9	159.09			47686000	72	216	71	112;113	148;149;150;151	150	173	4	9606
AEEGIAAGGVMDVNTALQEVLK	Acetyl (Protein N-term)	2256.1308	0.13076276	216	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	0	0	5	0					2	24.999	24.999	2;3	8.626200000000001E-29	21322	DP1145_15	222.88	174.84			8065400	73	216	71	114;115	152;153;154;155;156	152		5	9606
AEFVEVTK	Unmodified	921.48075	0.48074791	12	CON__P02769			yes	yes	0	0	0	4	0				1		15.805	15.805	2	0.030652	8601	DP1145_14	87.696	25.589		+	20456000	74	12	72	116	157	157		1	9606
AEGPEVDVNLPK	Unmodified	1266.6456	0.6455814	431	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	2	0		1				17.322	17.322	2	0.010301	12145	DP1145_12	86.882	47.629			11499000	75	431	73	117	158	158		1	9606
AELNEFLTR	Unmodified	1091.5611	0.56112349	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	2.5	1.5	1			1		18.56	18.56	2	3.0467E-22	13004	DP1145_14	168.27	76.366			623990000	76	210	74	118;119	159;160;161	160		3	9606
AELQQLR	Acetyl (Protein N-term)	898.48723	0.48723027	620	Q96C01	FAM136A	Protein FAM136A	yes	yes	1	0	0	5	0					1	18.657	18.657	2	1.4589E-18	12484	DP1145_15	150.07	81.584			3984500	77	620	75	120	162	162		1	9606
AELVAQMMEFIR	Oxidation (M)	1452.7105	0.71050662	584	Q8NDA8	MROH1	Maestro heat-like repeat-containing protein family member 1	yes	yes	0	1	0	1	0	1					16.635	16.635	3	0.030686	8886	DP1145_11	66.56	28.843			0	78	584	76	121	163	163	436	1	9606
AEPASVAAESLAGSR	Acetyl (Protein N-term)	1456.7158	0.71578623	719	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	1	0	0	4	0				1		19.66	19.66	2	5.6496E-05	14659	DP1145_14	166.24	128.69			58104000	79	719	77	122	164	164		1	9606
AEPGEGLPEEVLALIFR	Acetyl (Protein N-term)	1880.9884	0.98837927	623	Q96CD0	FBXL8	F-box/LRR-repeat protein 8	yes	yes	1	0	0	4	0				1		23.101	23.101	2	0.0052949	19602	DP1145_14	84.687	35.498			5517300	80	623	78	123	165	165		1	9606
AEPGEGTRPATVGDSSAR	Unmodified	1756.834	0.83400389	668	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	1	2	0		1				13.761	13.761	3	0.02573	6690	DP1145_12	68.413	24.865			2024600	81	668	79	124	166	166		1	9606
AEPVEVVAPR	Unmodified	1065.5819	0.58185893	153	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		2				15.867	15.867	2	1.3371E-05	9741	DP1145_12	140.35	100.71			0	82	153	80	125;126	167;168	168		2	9606
AERGELDLTGAK	Acetyl (Protein N-term)	1300.6623	0.6622941	175	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	1	0	1	4	0				1		17.16	17.16	2	1.1986E-06	10672	DP1145_14	145.23	82.68			228830000	83	175	81	127	169	169		1	9606
AESDWDTVTVLR	Acetyl (Protein N-term)	1432.6834	0.68342347	74	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	1	0	0	5	0					1	21.865	21.865	2	0.017474	17048	DP1145_15	64.73	26.162			17233000	84	74	82	128	170	170		1	9606
AETLEFNDVYQEVK	Acetyl (Protein N-term)	1725.8097	0.8097462	425	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	2.5	1.5	1			1		21.99	21.99	2	0.001976	18034	DP1145_14	138.99	110.19			0	85	425	83	129;130	171;172	172		2	9606
AEVQVLVLDGR	Acetyl (Protein N-term)	1239.6823	0.68230126	260	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	4	0				1		22.052	22.052	2	0.0015168	18129	DP1145_14	115.78	61.813			18114000	86	260	84	131	173	173		1	9606
AEYLASIFGTEK	Acetyl (Protein N-term)	1369.6765	0.67654718	410	Q8WU68;Q01081	U2AF1L4;U2AF1	Splicing factor U2AF 26 kDa subunit;Splicing factor U2AF 35 kDa subunit	yes	no	1	0	0	4	0				2		24.987	24.987	1;2	1.1552E-12	22092	DP1145_14	164.65	133.23			6511600	87	410	85	132;133	174;175	175		2	9606
AEYLASIFGTEKDK	Acetyl (Protein N-term)	1612.7985	0.79845323	410	Q8WU68;Q01081	U2AF1L4;U2AF1	Splicing factor U2AF 26 kDa subunit;Splicing factor U2AF 35 kDa subunit	yes	no	1	0	1	4	0				1		23.043	23.043	2	1.0321E-85	19472	DP1145_14	237.67	139.71			8976400	88	410	86	134	176;177	176		2	9606
AFAVGVQQVLLK	Unmodified	1271.7602	0.76015765	101	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				19.577	19.577	2	0.0096912	15736	DP1145_12	87.696	49.42			47222000	89	101	87	135	178	178		1	9606
AFENDVDALCNLR	Unmodified	1535.7038	0.70384134	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.57	19.57	2	0.0061057	15080	DP1145_13	90.149	51.582			1184600000	90	124	88	136;137	179;180	179		1	9606
AFITNIPFDVK	Unmodified	1263.6863	0.68632401	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3.5	0.5			1	1		20.471	20.471	2	0.010324	16258	DP1145_13	91.265	53.454			135700000	91	310	89	138;139	181;182	181		2	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	Unmodified	2751.4596	0.45956554	127	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				1		21.345	21.345	2	2.9815E-18	17173	DP1145_14	166.47	156.33			63937000	92	127	90	140	183;184;185	184		3	9606
AFLIEEQK	Unmodified	976.52295	0.52294707	294	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	17.136	17.136	2	1.6574E-40	10133	DP1145_15	183.9	85.479			36468000	93	294	91	141	186;187	186		2	9606
AFLLESLLK	Unmodified	1032.6219	0.62193284	631	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	2	0		1				22.016	22.016	2	0.0030893	19216	DP1145_12	104.75	50.542			7549800	94	631	92	142	188	188		1	9606
AFMGTPVQK	Unmodified	977.50044	0.50043749	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				15.772	15.772	2	0.029025	9562	DP1145_12	80.165	21.35			49958000	95	278	93	143	189	189		1	9606
AFPYGNVAFPHLPGSAPSWPSLVDTSK	Unmodified	2841.4126	0.41261535	540	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	3	0			1			21.891	21.891	3	0.0061195	18336	DP1145_13	56.452	42.342			8363600	96	540	94	144	190	190		1	9606
AFSSPQEEEEAGFTGR	Unmodified	1740.7591	0.75910761	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2.5	0.5		1	1			17.427	17.427	2	1.1955E-09	12274	DP1145_12	193.49	148.93			58287000	97	472	95	145;146	191;192	191		2	9606
AFVDFLSDEIKEER	Unmodified	1696.8308	0.83081599	422	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	4	0				2		20.563	20.563	2;3	0.00099685	16054	DP1145_14	101.3	70.975			517850000	98	422	96	147;148	193;194	193		2	9606
AFVHWYVGEGMEEGEFSEAR	Oxidation (M)	2345.0059	0.005896599	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	3	0			1			19.18	19.18	3	5.5892E-05	14416	DP1145_13	139.46	119.02			454280000	99	393;547;662	97	149	195;196	195	288	2	9606
AFVHWYVGEGMEEGEFSEAREDMAALEK	2 Oxidation (M)	3248.4067	0.40667963	393;547;662	P68363;P68366;Q71U36;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	2	1	3	0			1			19.202	19.202	4	2.9416E-06	14335	DP1145_13	76.417	56.192			44917000	100	393;547;662	98	150	197;198	197	288;289;489	2	9606
AFYGDTLVTGFAR	Unmodified	1416.7038	0.70376498	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			20.211	20.211	2	9.8946E-103	15945	DP1145_13	232.41	175.49			828530000	101	710	99	151;152	199;200;201;202;203	201		5	9606
AFYPEEISSMVLTK	Oxidation (M)	1629.796	0.79601039	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			2			19.772	19.772	2;3	5.2588E-17	15250	DP1145_13	174.57	150.11			266520000	102	156	100	153;154	204;205	204	121	2	9606
AFYPEEISSMVLTK	Unmodified	1613.8011	0.80109577	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			21.09	21.09	2	2.1477E-22	17102	DP1145_13	174.77	119.7			199270000	103	156	100	155	206;207;208	207		3	9606
AGAANSQLSTSQPSLR	Unmodified	1586.8012	0.8012472	622	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	0	0	0	4	0				1		15.604	15.604	2	0.0038328	8457	DP1145_14	100.22	40.315			22122000	104	622	101	156	209	209		1	9606
AGAIAPCEVTVPAQNTGLGPEK	Unmodified	2179.0943	0.094317676	127	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		18.06	18.06	2	2.0408E-13	12269	DP1145_14	191.01	161.94			195030000	105	127	102	157	210;211	210		2	9606
AGEQLAPFLPQLVPR	Unmodified	1634.9144	0.91442646	532	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	2	0		1				21.694	21.694	2	0.0031233	18737	DP1145_12	119.34	91.104			4497100	106	532	103	158	212;213;214	213		3	9606
AGILFEDIFDVKDIDPEGK	Acetyl (Protein N-term)	2162.0783	0.078316486	312	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	1	0	1	5	0					1	25.549	25.549	2	0.0001112	22052	DP1145_15	176.43	146.63			1763400	107	312	104	159	215;216;217	215		3	9606
AGLELLSDQGYR	Acetyl (Protein N-term)	1362.6779	0.67794416	716	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	1	0	0	4	0				1		22.211	22.211	2	2.6817E-166	18361	DP1145_14	254.57	191.15			97762000	108	716	105	160	218;219;220	219		3	9606
AGLQFPVGR	Unmodified	943.52395	0.52395013	118;154	Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;Q8IUE6;Q96QV6;P16104;Q71UI9;P0C0S5	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST2H2AB;HIST1H2AA;H2AFX;H2AFV;H2AFZ	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 2-B;Histone H2A type 1-A;Histone H2AX;Histone H2A.V;Histone H2A.Z	no	no	0	0	0	3	1.58	1	1		1	1	17.922	17.922	2	1.9832E-05	11455	DP1145_15	124.59	61.88			2243000000	109	118;154	106	161;162;163;164	221;222;223;224;225	225		4	9606
AGNFYVPAEPK	Unmodified	1191.5924	0.59242362	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		17.06	17.06	2	0.037987	10563	DP1145_14	70.399	22.741			55887000	110	195	107	165	226	226		1	9606
AGNLGGGVVTIER	Unmodified	1241.6728	0.67279921	243	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	5	0					1	16.978	16.978	2	0.010742	9919	DP1145_15	83.182	38.024			74965000	111	243	108	166	227	227		1	9606
AGPGSLELCGLPSQK	Unmodified	1512.7606	0.76062794	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		18.238	18.238	2	0	13557	DP1145_12	308.12	249.53			1060899999.9999999	112	480	109	167;168;169	228;229;230;231;232;233	229		6	9606
AGPQPLALQLEQLLNPR	Acetyl (Protein N-term)	1899.0578	0.057796236	734	Q9NY61	AATF	Protein AATF	yes	yes	1	0	0	3	0			1			25.621	25.621	2	8.1193E-57	23399	DP1145_13	225.63	191.87			17409000	113	734	110	170	234;235;236;237;238	237		5	9606
AGPQPLALQLEQLLNPRPSEADPEADPEEATAAR	Acetyl (Protein N-term)	3635.8067	0.80673309	734	Q9NY61	AATF	Protein AATF	yes	yes	1	0	1	3	0			2			24.123	24.123	3;4	3.8979E-11	21278	DP1145_13	83.026	69.771			75176000	114	734	111	171;172	239;240;241;242;243	241		5	9606
AGQVFLEELGNHK	Unmodified	1440.7361	0.73612775	150	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	1	0	1					17.905	17.905	3	0.0014624	10958	DP1145_11	134.75	89.596			0	115	150	112	173	244	244		1	9606
AGTATSPAGSSPAVAGGTQR	Unmodified	1742.8547	0.85473933	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	0.5		1	1			14.367	14.367	2	2.545E-46	7442	DP1145_12	193.51	144.53			18113000	116	451	113	174;175	245;246;247	245		3	9606
AGTVVLDDVELR	Acetyl (Protein N-term)	1327.6983	0.69834526	215	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	1	0	0	2	0		1				21.89	21.89	2	0.0043918	19030	DP1145_12	104.43	68.116			9443800	117	215	114	176	248	248		1	9606
AGVLAHLEEERDLK	Unmodified	1578.8366	0.83657007	245	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	yes	no	0	0	1	2	0		1				16.799	16.799	3	0.010122	11242	DP1145_12	91.202	52.756			3534300	118	245	115	177	249	249		1	9606
AGVNTVTTLVENKK	Unmodified	1472.8199	0.81985737	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		16.198	16.198	3	0.0014791	9374	DP1145_14	99.669	48.057			87769000	119	366	116	178	250;251	251		2	9606
AGVREKR	Unmodified	814.47733	0.47733428	465	Q13895	BYSL	Bystin	yes	yes	0	0	2	4	0				1		20.362	20.362	1	0.043439	15457	DP1145_14	44.721	1.8068			90501000	120	465	117	179	252	252		1	9606
AHEVGAQGGPPVAQVEQDLPISR	Unmodified	2354.1979	0.19787154	477	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	2	0		1				18.427	18.427	3	0.0025109	13793	DP1145_12	69.084	39.318			0	121	477	118	180	253	253		1	9606
AHQVVEDGYEFFAK	Unmodified	1638.7678	0.7678218	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.8	0.748			2	2	1	18.314	18.314	2;3	3.6947E-42	12684	DP1145_14	193.15	154.44			4999400000	122	252;350;351	119	181;182;183;184;185	254;255;256;257;258;259	257		4	9606
AHQVVEDGYEFFAKR	Unmodified	1794.8689	0.86893283	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	4	0				1		17.759	17.759	3	0.00039047	11670	DP1145_14	94.532	68.587			83487000	123	252;350;351	120	186	260	260		1	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	2 Oxidation (M)	3215.4724	0.4724082	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	1	2.33	0.471		2	1			15.474	15.474	4;5	1.0432E-06	9126	DP1145_12	75.512	30.27			96464000	124	480	121	187;188;189	261;262;263;264;265	261	363;364	5	9606
AHSIQIMKVEEIAASK	Oxidation (M)	1769.9346	0.93456956	414	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	1	1	5	0					1	16.294	16.294	3	0.02115	8868	DP1145_15	66.738	34.453			13554000	125	414	122	190	266	266	304	1	9606
AHSSMVGVNLPQK	Oxidation (M)	1382.6976	0.69763375	109	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	1	0	4	0				1		14.486	14.486	3	0.0069834	6649	DP1145_14	75.088	36.508			18600000	126	109	123	191	267	267	65	1	9606
AIAELGIYPAVDPLDSTSR	Unmodified	1987.0262	0.026221336	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			21.196	21.196	2	0.017159	17225	DP1145_13	110.25	79.066			37144000	127	131	124	192;193	268;269	269		2	9606
AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFK	Unmodified	3950.0618	0.061825566	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	0	1					22.149	22.149	4	0.00011881	17280	DP1145_11	54.997	35.548			9919700	128	164	125	194	270	270		1	9606
AIAYLFPSGLFEK	Unmodified	1454.781	0.78095267	402	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	4	0				1		22.211	22.211	2	0.0004952	18328	DP1145_14	104.22	67.528			9419800	129	402	126	195	271;272	271		2	9606
AIENIDTLTNLESLFLGK	Unmodified	1990.0623	0.062272491	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0.707			1	2	1	24.287	24.287	2;3	7.8361E-131	21132	DP1145_14	237.59	169.06			34046000	130	499	127	196;197;198;199	273;274;275;276;277;278;279;280	274		8	9606
AIEPPPLDAVIEAEHTLR	Unmodified	1970.0473	0.047291129	424	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					20.648	20.648	3	0.0085494	15213	DP1145_11	82.01	61.919			14590000	131	424	128	200	281	281		1	9606
AIFQTIQNR	Unmodified	1089.5931	0.59309232	101	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				16.976	16.976	2	3.0876E-13	11597	DP1145_12	153.73	72.536			28760000	132	101	129	201	282;283	282		2	9606
AIGFVVGQTDWEK	Unmodified	1448.73	0.72997974	299	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	2.5	0.5		1	1			19.76	19.76	2	0.023196	15878	DP1145_12	72.006	33.73			31134000	133	299	130	202;203	284;285	284		2	9606
AIGIGAYLVR	Unmodified	1031.6128	0.61276513	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					19.443	19.443	2	6.9047E-06	13481	DP1145_11	127.12	57.119			615880000	134	441;43	131	204	286;287	287		2	9606
AIGPHDVLATLLNNLK	Unmodified	1687.9621	0.96210494	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	3	0			1			22.713	22.713	3	0.025067	19304	DP1145_13	66.059	23.262			3885000	135	84	132	205	288	288		1	9606
AIIIFVPVPQLK	Unmodified	1336.8482	0.84824438	349	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	21.962	21.962	2	0.00080554	17059	DP1145_15	123.92	113.91			120370000	136	349	133	206	289;290	289		2	9606
AILQATLREEK	Unmodified	1270.7245	0.72450043	435	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	4	0				1		15.604	15.604	2	0.042551	8312	DP1145_14	95.775	44.582			20995000	137	435	134	207	291	291		1	9606
AILVDLEPGTMDSVR	Oxidation (M)	1630.8236	0.82362212	137;464;454	P07437;Q13885;Q9BVA1;Q13509	TUBB;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	1	0	3	1.41	1	1	1	1	1	19.173	19.173	2	1.0225E-42	13898	DP1145_14	199.8	146.2			1690499999.9999998	138	137;464;454	135	208;209;210;211;212	292;293;294;295;296;297;298	297	105	7	9606
AILVDLEPGTMDSVR	Unmodified	1614.8287	0.8287075	137;464;454	P07437;Q13885;Q9BVA1;Q13509	TUBB;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		20.071	20.071	2	0.0028265	15524	DP1145_13	126.66	75.131			654310000	139	137;464;454	135	213;214	299;300	299		2	9606
AIPNNQVLGK	Unmodified	1052.5978	0.59784335	74	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	5	0					1	15.299	15.299	2	0.0097879	7370	DP1145_15	96.19	56.528			19192000	140	74	136	215	301	301		1	9606
AIQLEYSEAR	Unmodified	1178.5932	0.5931519	55	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	0	1					17.167	17.167	2	0.028091	9253	DP1145_11	78.516	36.229			679780000	141	55	137	216	302	302		1	9606
AITGASLADIMAK	Unmodified	1260.6748	0.67477304	404	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	19.49	19.49	2	0.00017161	13874	DP1145_15	131.82	84.737			46165000	142	404	138	217	303	303		1	9606
AIVSSGTLGDR	Unmodified	1074.5669	0.56693715	417	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				15.672	15.672	2	2.5077000000000002E-33	9285	DP1145_12	189.7	132.52			11509000	143	417	139	218	304	304		1	9606
AKEQEAEPEEQEEDSSSDPR	Unmodified	2288.9517	0.951672	324	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	1	3.5	0.5			1	1		13.665	13.665	3	3.4468E-35	6026	DP1145_13	184.97	170.66			24510000	144	324	140	219;220	305;306;307	305		3	9606
ALAAAGYDVEK	Unmodified	1106.5608	0.56078914	184;157	P10412;P16402;P22492;Q02539;P16403	HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1;Histone H1.2	no	no	0	0	0	4	0				1		15.987	15.987	2	0.00014536	8920	DP1145_14	116.52	72.14			1493299999.9999998	145	157;184	141	221	308;309;310	310		3	9606
ALAAAGYDVEKNNSR	Unmodified	1577.7798	0.77978347	184;157	P10412;P16402;P22492;Q02539;P16403	HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1;Histone H1.2	no	no	0	0	1	4	0				2		14.987	14.987	2;3	4.8017999999999997E-23	7191	DP1145_14	206.45	124.66			158570000	146	157;184	142	222;223	311;312;313	311		3	9606
ALAVSDLNR	Unmodified	957.52434	0.52434406	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.204	16.204	2	2.1045E-58	9679	DP1145_13	208.59	101.16			1648399999.9999998	147	164	143	224;225;226;227	314;315;316;317;318;319;320;321	318		8	9606
ALEDLAGFK	Unmodified	962.5073	0.50729701	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.67	0.943		2		1		18.577	18.577	1;2	1.5262E-09	14051	DP1145_12	146.58	50.394			28852000	148	278	144	228;229;230	322;323;324;325;326;327	322		6	9606
ALEESNYELEGK	Unmodified	1380.6409	0.64088996	18	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	1.58	1	1		1	1	16.457	16.457	2	1.5405E-06	8614	DP1145_11	169.65	81.478		+	774070000	149	18	145	231;232;233;234	328;329;330;331;332;333;334;335;336	328		8	9606
ALELTGLK	Unmodified	843.50657	0.50656873	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0			1			17.58	17.58	2	1.3865E-10	11880	DP1145_13	146.94	32.922			0	150	199	146	235	337	337		1	9606
ALEQIDENLIYWPR	Unmodified	1758.8941	0.89408495	681	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		21.731	21.731	2	5.1626000000000005E-123	17541	DP1145_14	236.77	162.93			4099800	151	681	147	236	338;339	338		2	9606
ALESSLWELQALQR	Unmodified	1642.8679	0.8678702	672	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	3	0			1			21.162	21.162	2	2.7999E-15	17206	DP1145_13	183.85	126.5			0	152	672	148	237	340	340		1	9606
ALFPGDSEIDQLFR	Unmodified	1606.7991	0.79912193	214	P24941;Q00526	CDK2;CDK3	Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	yes	no	0	0	0	4	0				1		22.503	22.503	2	0.0018836	18791	DP1145_14	122.69	89.633			10692000	153	214	149	238	341	341		1	9606
ALGLVTPAGVLLAGPPGCGK	Unmodified	1847.0339	0.033889671	50	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				21.272	21.272	2	0.0036807	18125	DP1145_12	97.463	64.857			6566000	154	50	150	239	342;343	342		2	9606
ALGTPNNEVWPEVESLQDYK	Unmodified	2288.0961	0.096091815	130	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		20.972	20.972	2	7.902E-35	16531	DP1145_14	184	142.6			11482000	155	130	151	240	344;345;346	345		3	9606
ALLAANEEEDR	Unmodified	1229.5888	0.58879481	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				15.672	15.672	2	2.138E-07	9323	DP1145_12	143.03	98.012			5127900	156	520	152	241	347	347		1	9606
ALLAANEEEDREIR	Unmodified	1627.8166	0.81656291	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2.33	1.11	2	1	2	1		16.001	16.001	2;3	6.2866E-146	9924	DP1145_12	253.71	187.41			3443599999.9999995	157	520	153	242;243;244;245;246;247	348;349;350;351;352;353;354;355;356;357;358;359	351		12	9606
ALLEVVQSGGK	Unmodified	1099.6237	0.62372375	45	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	4	0				1		17.36	17.36	2	0.035144	11155	DP1145_14	120.45	79.57			39051000	158	45	154	248	360	360		0	9606
ALLFIPR	Unmodified	828.52216	0.52215921	143	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	3	0			1			19.38	19.38	2	0.00061261	14666	DP1145_13	120.76	10.813			80050000	159	143	155	249	361	361		1	9606
ALLFVPR	Unmodified	814.50651	0.50650915	138	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	3	0			1			18.679	18.679	2	0.038649	13777	DP1145_13	85.306	0			23703000	160	138	156	250	362	362		1	9606
ALLLLLVGGVDQSPR	Unmodified	1549.9192	0.91917749	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			2			22.375	22.375	2;3	0.0025437	19047	DP1145_13	68.277	49.941			26411000	161	240	157	251;252	363;364	363		2	9606
ALLTTNQLPQPDVFPLFK	Unmodified	2041.1248	0.12481317	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	3.5	0.5			1	1		22.569	22.569	2	4.4732E-26	19319	DP1145_13	205.31	153.95			137650000	162	734	158	253;254	365;366;367	365		3	9606
ALMLQGVDLLADAVAVTMGPK	Oxidation (M)	2128.1272	0.12719771	159	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	0	3	0			1			23.975	23.975	3	0.00016068	21274	DP1145_13	122.47	102.41			16256000	163	159	159	255	368;369	368	127;128	2	9606
ALMLQGVDLLADAVAVTMGPK	2 Oxidation (M)	2144.1221	0.12211233	159	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	2	0	3	0			1			23.278	23.278	3	0.032035	20240	DP1145_13	60.332	19.37			0	164	159	159	256	370	370	127;128	1	9606
ALQEWLLK	Unmodified	999.57532	0.57531699	686	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	4	0				1		19.861	19.861	2	0.04233	14497	DP1145_14	111.04	36.78			43998000	165	686	160	257	371	371		0	9606
ALQQEQEIEQR	Unmodified	1370.679	0.6790068	600	Q8WXI9;Q86YP4	GATAD2B;GATAD2A	Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha	yes	no	0	0	0	3	0			1			15.19	15.19	2	0.035339	8078	DP1145_13	82.287	35.83			0	166	600	161	258	372	372		1	9606
ALSDADVQK	Acetyl (Protein N-term)	987.48729	0.48728985	250	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	1	0	0	4	0				1		16.959	16.959	2	0.02705	10491	DP1145_14	65.465	17.55			8961000	167	250	162	259	373	373		1	9606
ALSQLALR	Unmodified	870.5287	0.52870115	693	Q9H211	CDT1	DNA replication factor Cdt1	yes	yes	0	0	0	3	0			1			17.429	17.429	2	0.00026255	10862	DP1145_13	137.18	29.435			27113000	168	693	163	260	374	374		0	9606
ALTLIAGSPLK	Unmodified	1082.6699	0.66994566	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			1			18.779	18.779	2	0.036312	13706	DP1145_13	109.44	58.373			25527000	169	566	164	261	375	375		0	9606
ALTLPGSSENEYIMK	Oxidation (M)	1667.8076	0.80763771	322	P55060	CSE1L	Exportin-2	yes	yes	0	1	0	2	0		1				18.222	18.222	2	0.013609	13499	DP1145_12	100.93	53.703			8346000	170	322	165	262	376	376	242	1	9606
ALTLQDLDNIWAAQAGK	Unmodified	1826.9527	0.95266246	614	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	1	0	1					22.564	22.564	2	0.00011132	17891	DP1145_11	147.26	100.53			2117700	171	614	166	263	377;378	378		2	9606
ALTSFLPAPTQLSQDQLEAEEK	Acetyl (Protein N-term)	2457.2275	0.22749992	457	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	0	3.8	0.748			2	2	1	23.699	23.699	2;3	1.5961E-117	20866	DP1145_13	235.24	180.57			83416000	172	457	167	264;265;266;267;268	379;380;381;382;383;384;385;386;387;388;389;390	380		12	9606
ALTVAHELLCNKPEEEK	Unmodified	1979.9986	0.99862638	417	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				16.375	16.375	3	2.3582E-06	10570	DP1145_12	169.98	147.66			11096000	173	417	168	269	391	391		1	9606
ALTVPELTQQMFDAK	Oxidation (M)	1706.8549	0.85492225	394;113;454	P04350;P68371;Q13509	TUBB4A;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-3 chain	no	no	0	1	0	2	0		1				19.356	19.356	2	0.024744	15288	DP1145_12	92.112	19.772			14505000	174	113;394;454	169	270	392	392	66	1	9606
ALTVPELTQQMFDAK	Unmodified	1690.86	0.86000763	394;113;454	P04350;P68371;Q13509	TUBB4A;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		21.304	21.304	2	8.2691E-05	16933	DP1145_14	147.24	85.429			503460000	175	113;394;454	169	271;272	393;394;395;396	396		4	9606
ALTVPELTQQMFDSK	Unmodified	1706.8549	0.85492225	464	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	0	0	2	1	1		1			20.258	20.258	2	0.0013257	17192	DP1145_13	133.05	23.661			106410000	176	464	170	273;274	397;398;399	398		3	9606
ALTVPELTQQMFDSK	Oxidation (M)	1722.8498	0.84983687	464	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	1	0	3.5	0.5			1	1		19.26	19.26	2	0.004065	15202	DP1145_13	116.55	82.46			41538000	177	464	170	275;276	400;401	400	354	1	9606
ALTVPELTQQVFDAK	Unmodified	1658.8879	0.88793694	137	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.8	0.748			2	2	1	21.069	21.069	2;3	7.6777E-43	17104	DP1145_13	164.92	127.39			1203000000	178	137	171	277;278;279;280;281	402;403;404;405;406;407;408;409;410;411	406		10	9606
ALVAYYQK	Unmodified	954.51747	0.51746776	356	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	16.178	16.178	2	1.6967E-11	8654	DP1145_15	141.98	39.004			176090000	179	356	172	282	412	412		1	9606
ALVDGPCTQVR	Unmodified	1214.6078	0.60775611	306	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	4	0				2		15.953	15.953	2	3.6874E-05	8756	DP1145_14	141.2	95.86			0	180	306	173	283;284	413;414	413		2	9606
ALVDILSEVSK	Unmodified	1172.6653	0.66525421	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.091	21.091	2	0.01848	17935	DP1145_12	82.749	48.543			9705100	181	663	174	285	415	415		1	9606
ALVENCLVPDLWIR	Unmodified	1696.8971	0.89706184	488	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				22.214	22.214	2	0.0037488	19504	DP1145_12	110.08	71.675			0	182	488	175	286	416	416		1	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	Unmodified	3135.3979	0.39788908	422	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		20.908	20.908	3	4.0621E-10	16490	DP1145_14	126.29	104.34			45704000	183	422	176	287	417;418	417		2	9606
ALVTTHHLMVHGNER	Oxidation (M)	1729.8682	0.86822133	70	O60641	SNAP91	Clathrin coat assembly protein AP180	yes	yes	0	1	0	4	0				1		13.784	13.784	4	0.030952	5728	DP1145_14	53.038	28.109			924320	184	70	177	288	419	419	50	0	9606
ALYDTFSAFGNILSCK	Unmodified	1805.8658	0.86582129	166	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			22.762	22.762	2	0.00255	19580	DP1145_13	138.42	108.49			2725100	185	166	178	289	420	420		1	9606
ALYEALKENEK	Unmodified	1306.6769	0.67688153	83	O75496	GMNN	Geminin	yes	yes	0	0	1	4	0				1		15.579	15.579	3	5.208E-05	8337	DP1145_14	112.85	80.686			18532000	186	83	179	290	421	421		1	9606
AMEMRLPVAR	Acetyl (Protein N-term);2 Oxidation (M)	1246.6162	0.61621231	463	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	1	2	1	1	0	1					16.167	16.167	2	0.031545	9376	DP1145_11	53.493	17.069			347660000	187	463	180	291	422	422	352;353	1	9606
AMGEQAVALAR	Oxidation (M)	1131.5706	0.57064232	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		15.113	15.113	2	2.3186E-17	7596	DP1145_14	168.26	116.92			577030000	188	123	181	292;293;294	423;424;425;426	426	80	4	9606
AMGEQAVALAR	Unmodified	1115.5757	0.5757277	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1	0	1					16.391	16.391	2	2.3534E-10	8500	DP1145_11	148.52	100.67			88743000	189	123	181	295	427;428	428		2	9606
AMGIMNSFVNDIFER	2 Oxidation (M)	1774.8018	0.80184082	135;73	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	2	0	4.2	1.17		1		1	3	20.908	20.908	2	8.0693E-146	15619	DP1145_15	250.26	207.92			401600000	190	73;135	182	296;297;298;299;300	429;430;431;432;433;434;435	433	51;52	7	9606
AMGIMNSFVNDIFER	Oxidation (M)	1758.8069	0.8069262	135;73	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	1	0	5	0					2	22.002	22.002	2	2.1626E-85	16638	DP1145_15	223.87	185.07			211880000	191	73;135	182	301;302	436;437	436	51;52	2	9606
AMGIMNSFVNDIFER	Unmodified	1742.812	0.81201158	135;73	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	5	0					1	23.093	23.093	2	1.4194E-42	18765	DP1145_15	193.62	150.9			74766000	192	73;135	182	303	438;439	438		2	9606
AMHTPKPAVGEEKDINTFLGTPVQK	Unmodified	2707.4003	0.4003361	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				17.375	17.375	4	0.013643	12114	DP1145_12	57.981	48.201			40387000	193	278	183	304	440	440		1	9606
AMHTPKPAVGEEKDINTFLGTPVQK	Oxidation (M)	2723.3953	0.39525072	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	3	0			1			16.878	16.878	4	0.00897	10707	DP1145_13	53.381	34.337			122440000	194	278	183	305	441	441	208	1	9606
AMHTPKPSVGEEKDIIIFVGTPVQK	Oxidation (M)	2736.452	0.45203732	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	2.25	0.433		3	1			17.952	17.952	3;4;5	4.5863E-05	13135	DP1145_12	118.21	89.539			221210000	195	278	184	306;307;308;309	442;443;444;445;446	443	209	4	9606
AMHTPKPSVGEEKDIIIFVGTPVQK	Unmodified	2720.4571	0.4571227	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	3	0			1			18.178	18.178	4	0.03902	12858	DP1145_13	50.873	33.776			29508000	196	278	184	310	447	447		0	9606
AMLTPKPAGGDEKDIK	Oxidation (M)	1685.8658	0.86582129	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	3	0.816		2	2	2		13.623	13.623	3;4	0.0028528	5790	DP1145_13	97.223	62.105			25926000	197	278	185	311;312;313;314;315;316	448;449;450;451;452;453;454;455;456;457	452	210	10	9606
AMTDTFTLQAHDQFSPFSSSSGR	Oxidation (M)	2533.118	0.11796624	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.75	1.09	1		2	1		19.12	19.12	2;3	1.7527E-06	12893	DP1145_11	139.02	121.82			753610000	198	647	186	317;318;319;320	458;459;460;461	458	472	4	9606
AMTDTFTLQAHDQFSPFSSSSGR	Unmodified	2517.1231	0.12305162	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			19.722	19.722	3	0.00039898	15285	DP1145_13	103.26	84.021			0	199	647	186	321;322	462;463	463		2	9606
ANLPQSFQVDTSK	Unmodified	1433.7151	0.71505795	202	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2	0		1				17.422	17.422	2	0.024686	12192	DP1145_12	70.942	28.198			2241700	200	202	187	323	464	464		1	9606
APAMFNIR	Oxidation (M)	934.46947	0.46947171	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		16.198	16.198	2	0.0013347	9209	DP1145_14	122.15	69.855			353420000	201	339	188	324	465	465	252	1	9606
APAMFNIR	Unmodified	918.47456	0.47455709	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.859	17.859	2	0.042969	11969	DP1145_14	111.69	84.891			201850000	202	339	188	325	466	466		0	9606
APAMQPAEIQFAQR	Oxidation (M)	1572.7719	0.77186132	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3	0.816		1	1	1		16.871	16.871	2	0.00039448	10921	DP1145_13	145.46	82.241			611480000	203	480	189	326;327;328	467;468;469;470	468	365	4	9606
APEDFSQNWK	Unmodified	1220.5462	0.54620171	686	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3.5	0.5			1	1		17.419	17.419	2	1.2496E-06	11671	DP1145_13	137.14	106.57			139030000	204	686	190	329;330	471;472;473;474	472		3	9606
APEMTNELKNDLK	Oxidation (M)	1517.7396	0.73955814	522	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	1	1	3	0			1			14.838	14.838	3	0.020196	7612	DP1145_13	75.788	26.84			14281000	205	522	191	331	475	475	404	0	9606
APGAEEDDSELQR	Unmodified	1415.6165	0.61646612	516	Q53F19	C17orf85	Uncharacterized protein C17orf85	yes	yes	0	0	0	3	0			1			14.838	14.838	2	0.0030549	7706	DP1145_13	96.171	57.396			47617000	206	516	192	332	476	476		1	9606
APGEQTVPALNLQNAFR	Unmodified	1824.9482	0.94824579	789	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					20.037	20.037	2	0.0023439	14098	DP1145_11	105.65	64.485			28024000	207	789	193	333	477;478	477		2	9606
APILIATDVASR	Unmodified	1225.703	0.7030367	193;611	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3.5	0.5			1	1		18.069	18.069	2	9.125200000000001E-57	12623	DP1145_13	209.73	180.57			1138800000	208	611;193	194	334;335	479;480;481;482	479		4	9606
APIRPDIVNFVHTNLR	Unmodified	1861.0323	0.032250187	251	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			18.614	18.614	3	0.0010279	13596	DP1145_13	116.86	74.768			122270000	209	251	195	336	483	483		1	9606
APKPDGPGGGPGGSHMGGNYGDDR	Unmodified	2251.9665	0.9664914	247	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	4	1			1		1	14.127	14.127	4	0.0040693	6695	DP1145_13	72.654	44.514			107170000	210	247	196	337;338	484;485	484		1	9606
APKPDGPGGGPGGSHMGGNYGDDR	Oxidation (M)	2267.9614	0.96140602	247	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3.5	0.5			1	1		12.873	12.873	4	0.0013847	5682	DP1145_13	71.042	59.811			124010000	211	247	196	339;340	486;487	486	189	1	9606
APSSSSNCPPSAPTLDSSKPR	Unmodified	2142.0011	0.0011455721	749	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	1	2	0		1				14.167	14.167	3	0.01468	8092	DP1145_12	67.312	46.183			9869600	212	749	197	341	488	488		1	9606
APSTYGGGLSVSSR	Unmodified	1337.6575	0.65754307	16	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	1	0	1					16.074	16.074	2	0.014858	7967	DP1145_11	86.463	40.006		+	0	213	16	198	342	489	489		1	9606
APSTYGGGLSVSSSR	Unmodified	1424.6896	0.68957148	5	P02533;CON__P02533	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1.5	0.5	1	1				16.022	16.022	2	0.00099352	7925	DP1145_11	140.63	83.818		+	0	214	5	199	343;344	490;491	490		2	9606
AQAAAPASVPAQAPK	Unmodified	1376.7412	0.74121312	289	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	4.5	0.5				1	1	14.643	14.643	2	0.001263	6911	DP1145_14	109.24	77.602			33273000	215	289	200	345;346	492;493	492		2	9606
AQALEDLAGFK	Unmodified	1161.603	0.60298831	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0.816	1	1	1			18.905	18.905	2	0.00010403	14646	DP1145_12	113.62	71.335			500180000	216	278	201	347;348;349	494;495;496	495		3	9606
AQALEDLAGFKELFQTPGHTEELVAAGK	Unmodified	2969.5135	0.5134516	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	0			1			21.078	21.078	4	0.018542	17058	DP1145_13	50.055	27.646			19438000	217	278	202	350	497	497		0	9606
AQALEDLAGFKELFQTR	Unmodified	1936.0054	0.005426314	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	2	2				21.402	21.402	2;3	2.9655E-70	18342	DP1145_12	210.07	175.89			31155000	218	278	203	351;352;353;354	498;499;500;501;502;503;504	504		7	9606
AQALEELTGFR	Unmodified	1233.6354	0.63535107	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.28	19.28	2	9.2433E-32	15213	DP1145_12	188.66	133.29			359320000	219	278	204	355;356;357;358	505;506;507;508	506		2	9606
AQAVHPGYGFLSENKEFAR	Unmodified	2120.0439	0.043937085	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3.4	1.36	1		1	2	1	17.246	17.246	3;4	1.2328E-34	11447	DP1145_13	185.59	151.17			819050000	220	123	205	359;360;361;362;363	509;510;511;512;513	510		5	9606
AQAVSEEEEEEEGKSSSPK	Unmodified	2048.9022	0.90220261	687	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	1	2	0		1				13.967	13.967	3	0.006363	6934	DP1145_12	89.261	68.611			1510400	221	687	206	364	514	514		1	9606
AQAVTQPVPLANKPVPAQSTFPSK	Unmodified	2475.3486	0.34855853	299	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	2	0		1				16.976	16.976	3	0.0002832	11655	DP1145_12	91.128	75.154			22432000	222	299	207	365	515;516	516		2	9606
AQDQGEKENPMR	Acetyl (Protein N-term)	1443.6412	0.64124108	381	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	5	0					1	14.601	14.601	2	5.3198E-85	6286	DP1145_15	211.64	168.2			46661000	223	381	208	366	517;518	518		2	9606
AQEEADYIEWLK	Unmodified	1493.7038	0.70382456	581	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2	0		1				20.592	20.592	2	0.0056759	17099	DP1145_12	107.79	54.013			0	224	581	209	367	519	519		1	9606
AQEPESGLSEETQVK	Unmodified	1630.7686	0.76860967	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.819	15.819	2	0.0082528	7637	DP1145_11	105.36	67.745			0	225	400	210	368	520	520		1	9606
AQETEAAPSQAPADEPEPESAAAQSQENQDTRPK	Unmodified	3577.6041	0.60407012	761	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	1	3	0			1			15.594	15.594	3	2.5314E-08	8698	DP1145_13	73.87	59.387			0	226	761	211	369	521	521		1	9606
AQFEGIVTDLIR	Unmodified	1360.7351	0.73506511	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.078	21.078	2	0.0073466	17233	DP1145_13	90.827	45.229			177820000	227	255	212	370	522	522		1	9606
AQGPQQQPGSEGPSYAK	Unmodified	1728.8067	0.80672651	515	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				1		14.385	14.385	2	6.1031000000000004E-108	6479	DP1145_14	236.08	79.92			15339000	228	515	213	371	523	523		1	9606
AQIEQVIANCEHK	Unmodified	1538.7511	0.75112588	606	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	2	0		1				16.179	16.179	2	0.0064723	10367	DP1145_12	102.53	61.367			7665700	229	606	214	372	524	524		1	9606
AQIFANTVDNAR	Unmodified	1318.663	0.6629628	129	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	3.5	0.5			1	1		16.71	16.71	2	0.02398	10620	DP1145_13	75.387	39.942			171870000	230	129	215	373;374	525;526	525		1	9606
AQIHDLVLVGGSTR	Unmodified	1464.8049	0.80487601	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.33	0.471			2	1		17.106	17.106	2;3	0.00014759	11205	DP1145_13	143.55	102.38			1786799999.9999998	231	156	216	375;376;377	527;528;529;530	527		4	9606
AQNIMESFENPFR	Oxidation (M)	1597.7195	0.7194914	412	Q01780	EXOSC10	Exosome component 10	yes	yes	0	1	0	2	0		1				19.377	19.377	2	0.0053726	15189	DP1145_12	101.97	74.645			8880700	232	412	217	378	531	531	303	1	9606
AQPLEDLAGLK	Unmodified	1153.6343	0.63428844	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				18.777	18.777	2	0.014476	14369	DP1145_12	129.42	98			195540000	233	278	218	379	532	532		0	9606
AQQNNVEHKVETFSGVYK	Unmodified	2077.0229	0.022867292	349	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					1	16.286	16.286	3	0.0092874	8792	DP1145_15	85.176	58.339			88194000	234	349	219	380	533;534	533		2	9606
AQSLVISPPAPSPR	Unmodified	1418.7882	0.78816332	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			17.371	17.371	2	2.4397E-103	12155	DP1145_12	230.95	177.18			228590000	235	278	220	381;382;383	535;536;537;538;539;540	538		6	9606
AQVQLQLFK	Unmodified	1073.6233	0.62332982	479	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	2	0		1				18.777	18.777	2	0.0024437	14380	DP1145_12	107.59	41.243			6895700	236	479	221	384	541	541		1	9606
ARDVYEEAIR	Unmodified	1220.6149	0.61494998	712	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	1	2	0		1				15.145	15.145	3	0.0084955	8768	DP1145_12	88.441	35.651			7113200	237	712	222	385	542	542		1	9606
ARFEELNADLFR	Unmodified	1479.747	0.74702678	161	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			2			19.079	19.079	2;3	0.0016586	14230	DP1145_13	130.01	79.215			247470000	238	161	223	386;387	543;544	543		2	9606
ARHDSPDLAPNVTYSLPR	Unmodified	2008.0126	0.012636957	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	1	3	0			2			17.113	17.113	3;4	0.0017416	11189	DP1145_13	112.74	90.137			124400000	239	665	224	388;389	545;546;547	546		3	9606
ASALEQFVNSVR	Acetyl (Protein N-term)	1361.6939	0.69392858	763	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	1	0	0	4	0				1		24.166	24.166	2	5.5795E-43	21020	DP1145_14	193.83	68.672			3807400	240	763	225	390	548	548		1	9606
ASAQDAGDHVQPPEGR	Unmodified	1633.7445	0.7444606	618	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4	0				2		13.893	13.893	2;3	6.0997E-69	5825	DP1145_14	208.68	134.79			42782000	241	618	226	391;392	549;550;551	551		2	9606
ASAVSPANLPAVLLQPR	Acetyl (Protein N-term)	1744.9836	0.98356866	308	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	1.5	0.5	1	1				23.096	23.096	2	0.00062212	18592	DP1145_11	136.93	97.148			4337100	242	308	227	393;394	552;553;554;555;556	553		5	9606
ASESSKPWPDATYGTGSASR	Unmodified	2053.9341	0.93411186	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0.707	1	2	1			16.102	16.102	2;3	2.0673E-93	8023	DP1145_11	185.2	153.5			183070000	243	772	228	395;396;397;398	557;558;559;560;561;562	557		6	9606
ASFVTEVLAHSGR	Acetyl (Protein N-term)	1414.7205	0.72047768	56	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	1	0	0	2	0		1				22.262	22.262	2	4.2134E-16	19532	DP1145_12	166.29	132.29			6562600	244	56	229	399	563;564	564		2	9606
ASGNYATVISHNPETK	Unmodified	1687.8166	0.81656291	382	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	4.5	0.5				1	1	15.302	15.302	3	9.3997E-05	7846	DP1145_14	146.27	106.53			288460000	245	382	230	400;401	565;566;567	566		3	9606
ASGNYATVISHNPETKK	Unmodified	1815.9115	0.91152593	382	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				2		14.486	14.486	3;4	0.00065931	6607	DP1145_14	123.76	80.201			181550000	246	382	231	402;403	568;569	568		2	9606
ASGPPVSELITK	Unmodified	1197.6605	0.66050319	184;157	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	0	2.5	1.5	1			1		17.443	17.443	2	1.6141E-06	11081	DP1145_14	119.34	62.902			891150000	247	157;184	232	404;405	570;571;572	572		3	9606
ASGVAVSDGVIK	Acetyl (Protein N-term)	1143.6136	0.61355299	211	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	5	0					1	18.492	18.492	2	3.6629E-05	12280	DP1145_15	134.57	56.302			160360000	248	211	233	406	573	573		1	9606
ASIGQSPGLPSTTFK	Unmodified	1489.7777	0.77765821	530	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		1				17.748	17.748	2	0.0063639	12716	DP1145_12	150.69	105.83			0	249	530	234	407	574	574		1	9606
ASITPGTILIILTGR	Unmodified	1524.9239	0.92392852	415	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	3.4	1.36	1		1	2	1	23.776	23.776	2;3	0.00075791	20531	DP1145_14	87.824	72.005			18249000	250	415	235	408;409;410;411;412	575;576;577;578;579;580;581;582	581		8	9606
ASLEAAIADAEQR	Unmodified	1343.6681	0.66810776	14	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	4	0				1		19.023	19.023	2	0.00057997	13658	DP1145_14	167.09	109.54		+	0	251	14	236	413	583	583		1	9606
ASLENSLEETK	Unmodified	1219.5932	0.59321148	5;16	P02533;CON__P02533;CON__Q3ZAW8;CON__Q9Z2K1;CON__P08779;P08779	KRT14;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16	no	no	0	0	0	1	0	1					16.355	16.355	2	0.0039123	8358	DP1145_11	99.973	57.783		+	64438000	252	5;16	237	414	584	584		1	9606
ASLSLAPVNIFK	Acetyl (Protein N-term)	1300.7391	0.73908786	399	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	3.5	0.5			1	1		23.453	23.453	2	8.7596E-06	20538	DP1145_13	138.4	55.751			40951000	253	399	238	415;416	585;586;587;588	585		4	9606
ASMQQQQQLASAR	Oxidation (M)	1461.6994	0.69942466	787	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		13.742	13.742	2	0.0019839	5667	DP1145_14	112.94	69.656			957820	254	787	239	417	589;590	589	552	2	9606
ASPLVAIGQTLAR	Unmodified	1295.7561	0.75613491	725	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	4	0				1		19.861	19.861	2	5.5742E-08	14861	DP1145_14	155.53	102.82			71848000	255	725	240	418	591	591		1	9606
ASPSLERPEK	Acetyl (Protein N-term)	1154.5932	0.5931519	458	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	1	0	1	3	0			1			15.061	15.061	2	0.0076722	7878	DP1145_13	96.665	38.069			0	256	458	241	419	592	592		1	9606
ASPSPTDPVVPAVPIGPPPAGFR	Unmodified	2225.1845	0.18445331	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.29	1.03	2	2	2	1		20.162	20.162	2;3	7.29E-51	16496	DP1145_12	234.04	201.61			752000000	257	164	242	420;421;422;423;424;425;426	593;594;595;596;597;598;599;600;601;602;603	597		11	9606
ASPSPTDPVVPAVPIGPPPAGFRDILLR	Unmodified	2835.5647	0.56469931	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	1	0	1					21.437	21.437	3	1.5707E-06	16214	DP1145_11	85.013	42.11			5469500	258	164	243	427	604;605;606	604		3	9606
ASQPDLVDTPTSSKPQPK	Unmodified	1894.9636	0.96362108	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.957	1	2	2	1		14.755	14.755	2;3	0.00020088	8050	DP1145_12	184.01	165.47			579240000	259	278	244	428;429;430;431;432;433	607;608;609;610;611;612;613;614;615;616;617	610		11	9606
ASSEGTIPQVQR	Unmodified	1271.647	0.64697839	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	3	0			1			15.238	15.238	2	4.7724999999999996E-32	8187	DP1145_13	185.61	109.33			50131000	260	673	245	434	618	618		1	9606
ATALPLLK	Unmodified	825.53239	0.53238955	770	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		17.759	17.759	2	0.026991	11778	DP1145_14	91.626	38.072			45771000	261	770	246	435	619;620	619		2	9606
ATATISAKPQITNPK	Unmodified	1539.8621	0.86205654	773	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	1	4	0				1		14.564	14.564	3	0.010369	6645	DP1145_14	104.7	57.267			4317600	262	773	247	436	621	621		0	9606
ATENDIANFFSPLNPIR	Unmodified	1917.9585	0.95847612	235	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4	0				1		22.631	22.631	2	6.7359E-10	18904	DP1145_14	198.52	126.54			27577000	263	235	248	437	622;623	623		2	9606
ATENDIYNFFSPLNPVR	Unmodified	1995.969	0.96904081	236;313	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	3.67	0.471			1	2		22.652	22.652	2;3	2.7298000000000003E-127	18906	DP1145_14	299.42	244.94			180790000	264	236;313	249	438;439;440	624;625;626;627;628	626		5	9606
ATETVELHK	Acetyl (Protein N-term)	1068.5451	0.54513908	403	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	1	0	0	4	0				1		15.665	15.665	2	1.0556E-10	8365	DP1145_14	163.9	92.205			0	265	403	250	441	629	629		1	9606
ATFIKVPQNQNGK	Unmodified	1443.7834	0.78341229	199	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				15.128	15.128	3	0.027839	8647	DP1145_12	60.08	26.807			5777200	266	199	251	442	630	630		1	9606
ATFSGPAGPILSLNPQEDVEFQK	Acetyl (Protein N-term)	2486.2329	0.23291965	683	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	1	0	0	4	0				1		23.441	23.441	2	4.2068E-14	20045	DP1145_14	184.48	153.6			1824100	267	683	252	443	631;632	631		2	9606
ATIAGGGVIPHIHK	Unmodified	1369.783	0.78301836	154	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					3	15.542	15.542	2;3	0.0086248	7576	DP1145_15	81.565	55.652			33717000	268	154	253	444;445;446	633;634;635	634		3	9606
ATLGPTPTTPPQPPDPSQPPPGPMQH	Oxidation (M)	2658.2748	0.27480124	75	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	0	5	0					2	17.692	17.692	2;3	0.00079235	11060	DP1145_15	64.069	49.73			108920000	269	75	254	447;448	636;637;638;639	637	53	3	9606
ATLNAFLYR	Unmodified	1067.5764	0.57637963	730	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			18.979	18.979	2	9.604E-06	14159	DP1145_13	127.84	75.441			27204000	270	730	255	449	640	640		1	9606
ATLQEILPEVLK	Unmodified	1352.7915	0.79151736	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.476	21.476	2	0.00010122	18353	DP1145_12	134.57	94.943			5372300	271	663	256	450	641;642	641		2	9606
ATNIEQIFR	Acetyl (Protein N-term)	1132.5877	0.58767259	196	P18583	SON	Protein SON	yes	yes	1	0	0	2	0		1				22.063	22.063	2	0.015013	19283	DP1145_12	75.043	22.107			2440400	272	196	257	451	643	643		1	9606
ATQAHSLSYAGCNFLR	Acetyl (Protein N-term)	1836.8577	0.85771622	770	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	1	0	0	4	0				1		19.06	19.06	2	0.0016247	13908	DP1145_14	98.407	57.025			21104000	273	770	258	452	644	644		1	9606
ATSVLPR	Unmodified	742.43374	0.43373813	740	Q9P0W8	SPATA7	Spermatogenesis-associated protein 7	yes	yes	0	0	0	1.5	0.5	1	1				16.023	16.023	1	0.0047881	9649	DP1145_12	107.74	6.5329			935710000	274	740	259	453;454	645;646	646		2	9606
ATVLQTVFEDYVHSSER	Unmodified	1979.9589	0.95887005	704	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	1	0	1					21.945	21.945	3	0.0091647	16992	DP1145_11	82.663	57.052			2718400	275	704	260	455	647	647		1	9606
AVCMLSNTTAIAEAWAR	Oxidation (M)	1879.8921	0.89205282	393;547	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	1	0	3	0			1			19.881	19.881	2	2.2702E-09	15461	DP1145_13	159.99	119.4			177160000	276	393;547	261	456	648;649	649	290	2	9606
AVCMLSNTTAIAEAWAR	Unmodified	1863.8971	0.89713819	393;547	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3	0			2			21.078	21.078	2;3	0.0059112	17231	DP1145_13	146.5	99.707			63109000	277	393;547	261	457;458	650;651	651		2	9606
AVCMLSNTTAVAEAWAR	Oxidation (M)	1865.8764	0.87640275	662	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	1	0	3	0			1			19.18	19.18	2	0.0058824	14315	DP1145_13	138.24	104.92			102220000	278	662	262	459	652	652	490	1	9606
AVDIPHMDIEALK	Oxidation (M)	1466.7439	0.74391524	379	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	4	0				1		17.36	17.36	3	0.023435	10986	DP1145_14	59.116	25.889			116880000	279	379	263	460	653	653	275	1	9606
AVDIPHMDIEALKK	Oxidation (M)	1594.8389	0.83887826	379	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	1	4	0				1		16.248	16.248	3	0.013189	9227	DP1145_14	75.102	46.805			62569000	280	379	264	461	654	654	275	0	9606
AVDPEDDFQR	Unmodified	1190.5204	0.52038089	658	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		16.395	16.395	2	0.021963	9561	DP1145_14	83.948	51.533			51266000	281	658	265	462	655	655		1	9606
AVDSLVPIGR	Unmodified	1025.5869	0.58694431	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		17.932	17.932	2	1.5E-05	11968	DP1145_14	121.62	78.372			139390000	282	217	266	463;464;465;466	656;657;658;659	659		3	9606
AVDSQILPK	Unmodified	969.5495	0.54949617	415	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.142	16.142	2	0.0033868	9085	DP1145_14	104.06	47.51			81310000	283	415	267	467	660;661	661		2	9606
AVETPPLSSVNLLEGLSR	Unmodified	1881.0207	0.020742027	486	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	2	0		1				21.607	21.607	2	0.0076511	18611	DP1145_12	113.25	76.406			0	284	486	268	468	662	662		1	9606
AVEVAWETLQEEFSR	Unmodified	1792.8632	0.86317875	67	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	2	0		1				21.957	21.957	2	1.2157E-09	19133	DP1145_12	159.44	116.64			1150900	285	67	269	469	663	663		1	9606
AVFPSIVGR	Unmodified	944.54435	0.54435122	335;389	P60709;Q6S8J3;P63267;P68133;P68032;P62736;A5A3E0;P0CG38;P63261	ACTB;POTEE;ACTG2;ACTA1;ACTC1;ACTA2;POTEF;POTEI;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	3	1.41	1	1	1	1	1	18.474	18.474	2	4.2365E-09	13899	DP1145_12	143.11	87.603			524330000	286	335;389	270	470;471;472;473;474	664;665;666;667;668;669;670	666		6	9606
AVFPSIVGRPR	Unmodified	1197.6982	0.6982261	335;389	P60709;Q6S8J3;P63267;P68133;P68032;P62736;A5A3E0;P0CG38;P63261	ACTB;POTEE;ACTG2;ACTA1;ACTC1;ACTA2;POTEF;POTEI;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	4	0				1		17.189	17.189	3	0.023239	10797	DP1145_14	79.07	39.133			0	287	335;389	271	475	671	671		1	9606
AVFVDLEPTVIDEVR	Unmodified	1700.8985	0.89850163	393;547;662	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	1.12		1	1	1	1	21.206	21.206	2	4.0268999999999994E-102	16839	DP1145_14	268.58	217.3			2605700000	288	393;547;662	272	476;477;478;479	672;673;674;675;676;677;678;679	676		7	9606
AVGASFPLYEPAK	Unmodified	1348.7027	0.70270235	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			18.678	18.678	2	8.0908E-16	14209	DP1145_12	201.61	133.6			478870000	289	278	273	480;481	680;681;682;683;684	681		5	9606
AVLVDLEPGTMDSVR	Oxidation (M)	1616.808	0.80797206	394;113;514	P04350;P68371;Q3ZCM7	TUBB4A;TUBB4B;TUBB8	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-8 chain	no	no	0	1	0	3.33	0.471			2	1		18.685	18.685	2;3	6.6172E-15	13595	DP1145_13	171.67	137.78			876200000	290	113;394;514	274	482;483;484	685;686;687	686	67	3	9606
AVLVDLEPGTMDSVR	Unmodified	1600.8131	0.81305744	394;113;514	P04350;P68371;Q3ZCM7	TUBB4A;TUBB4B;TUBB8	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-8 chain	no	no	0	0	0	3	0			1			19.689	19.689	2	0.00072145	15103	DP1145_13	119.45	86.409			0	291	113;394;514	274	485	688	688		1	9606
AVNYVGAGTVEFIMDSK	Oxidation (M)	1815.8713	0.8713006	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.2	0.98	2		3			19.661	19.661	2;3	7.4642000000000005E-34	14985	DP1145_13	199.31	134.14			230920000	292	647	275	486;487;488;489;490	689;690;691;692;693	692	473	5	9606
AVNYVGAGTVEFIMDSK	Unmodified	1799.8764	0.87638598	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.078	21.078	2	0.0032753	17098	DP1145_13	131.79	97.293			173420000	293	647	275	491	694	694		1	9606
AVPLALALISVSNPR	Unmodified	1519.9086	0.9086128	448	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1.33	0.471	2	1				21.993	21.993	2	0.0062774	19149	DP1145_12	152.64	132.5			0	294	448	276	492;493;494	695;696;697	697		3	9606
AVQSTINHVKEERPEK	Unmodified	1863.9803	0.9802742	637	Q96MF7	NSMCE2	E3 SUMO-protein ligase NSE2	yes	yes	0	0	2	4	0				1		13.663	13.663	4	0.010094	5454	DP1145_14	101.43	66.58			1706300	295	637	277	495	698;699	698		2	9606
AVSDASAGDYGSAIETLVTAISLIK	Unmodified	2451.2745	0.27445011	505	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	3	0			2			26.101	26.101	2;3	2.5153E-56	24172	DP1145_13	159.98	127.29			5722300	296	505	278	496;497	700;701;702;703;704;705;706	702		7	9606
AVSILPLLGHGVPR	Unmodified	1427.8613	0.86126868	773	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	4	0				1		19.461	19.461	3	0.014293	14527	DP1145_14	68.515	40.132			11401000	297	773	279	498	707;708	708		2	9606
AVVMDLLR	Unmodified	915.52117	0.52117293	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.348	19.348	2	2.1137E-05	13242	DP1145_11	130.04	67.575			256960000	298	441	280	499	709	709		1	9606
AVVVCPKDEDYKQR	Unmodified	1705.8458	0.84575455	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	1.5	0.5	1	1				14.068	14.068	4	0.0049527	7178	DP1145_12	124.21	92.55			6068100	299	409	281	500;501	710;711	711		2	9606
AVVVNAAQLASYSQSK	Unmodified	1634.8628	0.86278482	416	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		18.092	18.092	2	0.0018045	12398	DP1145_14	109.84	56.634			30281000	300	416	282	502	712	712		1	9606
AYGGAYDVMSSK	Oxidation (M)	1263.5442	0.5441528	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	4	0				1		15.206	15.206	2	0.041584	7704	DP1145_14	88.134	68.863			30864000	301	124	283	503	713	713	88	1	9606
AYHEQLSVAEITNACFEPANQMVK	Oxidation (M)	2765.2789	0.27890034	393;547	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	1	0	3	0			1			18.975	18.975	3	4.9457E-13	13874	DP1145_13	156.08	130.7			217220000	302	393;547	284	504	714;715;716;717	714	291	4	9606
AYHEQLSVAEITNACFEPANQMVK	Unmodified	2749.284	0.28398571	393;547	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA4A;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3	0			1			19.58	19.58	3	4.1343E-24	14976	DP1145_13	142.22	112.22			99570000	303	393;547	284	505	718	718		1	9606
AYIAYELNSVQHR	Unmodified	1562.7841	0.78414057	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					17.261	17.261	2;3	2.9768E-246	9827	DP1145_11	280.96	210.56			365530000	304	441	285	506;507	719;720;721;722;723	719		5	9606
AYNMVDIIHSVVDER	Oxidation (M)	1775.8512	0.85123386	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		18.766	18.766	2;3	0.00050308	13664	DP1145_13	108.66	88.907			502030000	305	124	286	508;509;510	724;725;726;727	725	89	4	9606
AYNMVDIIHSVVDER	Unmodified	1759.8563	0.85631924	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			21.578	21.578	2;3	0.00046165	17672	DP1145_13	116.63	89.906			135390000	306	124	286	511;512	728;729;730	729		3	9606
AYNMVDIIHSVVDEREFFEIMPNYAK	Oxidation (M)	3145.4889	0.48889311	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3	0			1			21.878	21.878	4	0.0032809	18264	DP1145_13	56.404	26.612			20181000	307	124	287	513	731	731	89	0	9606
AYPYSQTGDDKVR	Unmodified	1498.7052	0.70522155	417	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	1.5	0.5	1	1				14.662	14.662	3	0.00097655	7865	DP1145_12	112.5	65.702			15414000	308	417	288	514;515	732;733;734	734		3	9606
AYSDQAIVNLLK	Unmodified	1333.7242	0.72416608	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	2	0		1				20.409	20.409	2	0.014917	16832	DP1145_12	81.95	45.394			1304700	309	605	289	516	735	735		1	9606
AYSEALAAFGNGALFVEK	Unmodified	1856.9309	0.93086439	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				21.558	21.558	2;3	0.002469	18572	DP1145_12	145.7	99.936			20639000	310	164	290	517;518	736;737;738	738		3	9606
AYVEANQMLGDLIK	Oxidation (M)	1579.7916	0.79159371	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	3	1		1		1		18.969	18.969	2	0.0046339	13684	DP1145_14	115.91	70.757			176950000	311	164	291	519;520	739;740	740	138	2	9606
AYVEANQMLGDLIK	Unmodified	1563.7967	0.79667909	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				20.732	20.732	2	8.628399999999999E-23	17347	DP1145_12	179.94	128.5			70369000	312	164	291	521	741;742;743	741		3	9606
AYVWDNNKDLAEWLEK	Unmodified	1992.9581	0.95814177	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.5	1.5	1			1		20.868	20.868	3	0.0008522	16337	DP1145_14	135.86	88.554			161140000	313	441	292	522;523	744;745;746	745		3	9606
CAPMSDLTDLK	Unmodified	1249.5683	0.56825906	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.076	18.076	2	0.014231	13358	DP1145_12	86.898	52.712			18356000	314	278	293	524	747	747		1	9606
CEMEGCGTVLAHPR	Oxidation (M)	1631.6854	0.68543086	632	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	1	0	3	0			1			14.238	14.238	3	5.8872E-42	6724	DP1145_13	174.46	142.8			27640000	315	632	294	525	748	748	456	0	9606
CEMEGCGTVLAHPR	Unmodified	1615.6905	0.69051624	632	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	0	3	0			1			15.293	15.293	3	0.012479	8280	DP1145_13	95.631	41.877			6833900	316	632	294	526	749	749		0	9606
CFIVGADNVGSK	Unmodified	1265.6074	0.60742176	127	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		17.16	17.16	2	0.00020433	10802	DP1145_14	130.41	88.983			241560000	317	127	295	527	750;751	751		2	9606
CKELGITALHIK	Unmodified	1381.7752	0.77515579	358	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	16.344	16.344	3	0.00065878	8945	DP1145_15	88.803	56.072			54745000	318	358	296	528	752	752		1	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	Oxidation (M)	2930.4154	0.41539382	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2.33	0.943	1		2			18.906	18.906	3;4	6.3789E-05	14075	DP1145_13	62.677	25.777			268210000	319	123	297	529;530;531	753;754;755	754	81	1	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	Unmodified	2914.4205	0.4204792	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.189	20.189	4	0.0046989	15970	DP1145_13	49.593	31.348			68678000	320	123	297	532	756	756		1	9606
CLPPSEAASDNHLK	Unmodified	1537.7195	0.7194914	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2.5	0.5		1	1			14.352	14.352	3	0.00044551	7437	DP1145_12	115.37	73.331			40687000	321	472	298	533;534	757;758	757		2	9606
CMQLTDFILK	Unmodified	1267.6305	0.63046539	306	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	4	0				1		21.345	21.345	2	0.02617	17068	DP1145_14	80.219	34.09			3679200	322	306	299	535	759	759		1	9606
CPFTGNVSIR	Unmodified	1149.5601	0.56007764	362	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	16.878	16.878	2	0.028376	9906	DP1145_15	78.264	33.869			186750000	323	362	300	536	760	760		1	9606
CPLMNVEHMKKMK	2 Oxidation (M)	1676.7871	0.78705916	633	Q96JS3	PGBD1	PiggyBac transposable element-derived protein 1	yes	yes	0	2	2	5	0					1	22.774	22.774	2	0.020774	18363	DP1145_15	62.463	12.356			11076000	324	633	301	537	761	761	457;458	1	9606
CPQVEEAIVQSGQK	Unmodified	1571.7614	0.76135622	674	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	3	0			1			16.677	16.677	2	0.0024601	10277	DP1145_13	99.752	53.346			11964000	325	674	302	538	762	762		1	9606
CRDDSFFGETSHNYHK	Unmodified	1998.8279	0.82787265	274	P43243	MATR3	Matrin-3	yes	yes	0	0	1	2	0		1				15.1	15.1	4	0.022399	8449	DP1145_12	75.316	57.851			2788300	326	274	303	539	763	763		0	9606
CTGGEVGATSALAPK	Unmodified	1417.6871	0.68712864	229	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	15.638	15.638	2	7.5069E-21	7910	DP1145_15	176.32	121.24			100250000	327	229	304	540	764	764		0	9606
CVACETPKPGTCVK	Unmodified	1605.7313	0.73131842	300	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	1	2	0		1				13.867	13.867	3	0.0015393	6816	DP1145_12	124.38	94.744			5351500	328	300	305	541	765;766	766		2	9606
CVIFEIPGAPDDEAVR	Unmodified	1786.856	0.85598488	629	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	3	0			1			20.632	20.632	2	0.017531	16446	DP1145_13	107.85	45.805			0	329	629	306	542	767	767		1	9606
DAASAALADAAEELLDR	Unmodified	1700.8217	0.82170787	567	Q86X53	ERICH1	Glutamate-rich protein 1	yes	yes	0	0	0	3.5	0.5			1	1		23.838	23.838	2	1.6175E-126	21068	DP1145_13	240.18	132.73			15372000	330	567	307	543;544	768;769;770	768		3	9606
DAEAWFNEK	Unmodified	1108.4825	0.48253882	18	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;CON__Q148H6;Q7Z3Z0;Q7Z3Y8	KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	yes	no	0	0	0	1.5	0.5	1	1				18.869	18.869	2	3.8088999999999997E-22	12390	DP1145_11	166.68	115.87		+	397620000	331	18	308	545;546	771;772;773;774;775	771		5	9606
DAEDVDLNHYR	Unmodified	1345.5899	0.58985744	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				2		16.198	16.198	2;3	0.00010803	9366	DP1145_14	113.71	79.785			323160000	332	499	309	547;548	776;777;778	778		3	9606
DAEEWFFTK	Unmodified	1171.5186	0.51858998	5	P02533;CON__P02533;CON__Q6IFX2	KRT14	Keratin, type I cytoskeletal 14	yes	no	0	0	0	1.5	0.5	1	1				21.018	21.018	2	1.3164000000000001E-33	15519	DP1145_11	197.3	132.54		+	6866600	333	5	310	549;550	779;780	779		2	9606
DAETWFLSK	Unmodified	1095.5237	0.52367535	16	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	1	0	1					20.347	20.347	2	0.00088704	14664	DP1145_11	115.49	54.812		+	0	334	16	311	551	781	781		1	9606
DAFLGSFLYEYSR	Unmodified	1566.7355	0.73545904	12	CON__P02769			yes	yes	0	0	0	3	1.58	1	1		1	1	22.966	22.966	2	8.108200000000001E-103	19366	DP1145_14	233.09	193.21		+	45688000	335	12	312	552;553;554;555	782;783;784;785;786;787;788;789	786		8	9606
DAGQISGLNVLR	Unmodified	1241.6728	0.67279921	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	2	0		1				19.077	19.077	2	0.035278	14811	DP1145_12	88.681	41.789			7928300	336	255	313	556	790	790		0	9606
DAGTIAGLNVLR	Unmodified	1198.667	0.66698555	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	5	0					1	19.744	19.744	2	0.014843	14083	DP1145_15	94.692	51.445			0	337	161	314	557	791	791		1	9606
DAGVIAGLNVLR	Unmodified	1196.6877	0.68772099	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			20.379	20.379	2	3.2254E-06	16125	DP1145_13	140.11	93.655			808280000	338	156	315	558	792	792		1	9606
DALPELLGLEAGSR	Unmodified	1439.762	0.76200815	725	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	4	0				1		21.641	21.641	2	0.00098489	17509	DP1145_14	149.49	112.15			28455000	339	725	316	559	793;794	794		2	9606
DALSDLALHFLNK	Unmodified	1455.7722	0.7721789	307	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3.5	0.5			1	1		22.663	22.663	2	1.2228E-31	19036	DP1145_14	198.25	163.49			35515000	340	307	317	560;561	795;796;797	797		3	9606
DAPTHLPSVDLSNPFTK	Unmodified	1837.921	0.92102798	530	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		1				19.777	19.777	3	0.0011795	15814	DP1145_12	106.6	78.049			3569000	341	530	318	562	798	798		1	9606
DATNVGDEGGFAPNILENK	Unmodified	1959.9174	0.91739917	133	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	2	0		1				19.824	19.824	2	2.0833E-27	15957	DP1145_12	221.85	181.83			0	342	133	319	563	799	799		1	9606
DAVIEFLLDK	Unmodified	1161.6281	0.62814043	682	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	4	0				1		22.503	22.503	2	0.037408	18795	DP1145_14	74.173	34.92			3942500	343	682	320	564	800	800		1	9606
DAVLLVFANK	Unmodified	1088.623	0.62299547	337	P84085;P84077;P61204	ARF5;ARF1;ARF3	ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3	yes	no	0	0	0	1.5	0.5	1	1				20.435	20.435	2	0.015791	16961	DP1145_12	122.18	53.793			21293000	344	337	321	565;566	801;802	802		0	9606
DAVVYPILVEFTR	Unmodified	1520.8239	0.82388012	788	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	2	0		1				23.268	23.268	2	0.019225	20999	DP1145_12	74.841	43.419			734800	345	788	322	567	803	803		1	9606
DCHCLGDVLIENTK	Unmodified	1672.7549	0.75489063	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				18.176	18.176	3	0.0058477	13518	DP1145_12	78.287	52.47			12310000	346	534	323	568	804	804		1	9606
DDCGTFEDTGPLLQFDYK	Unmodified	2119.9045	0.90445122	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			21.903	21.903	2	5.244400000000001E-75	19044	DP1145_12	267.67	239.03			18179000	347	480	324	569;570	805;806;807;808;809	806		5	9606
DDDIAALVVDNGSGMCK	Acetyl (Protein N-term);Oxidation (M)	1836.787	0.78697862	335	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	1	0	1.5	0.5	1	1				21.687	21.687	2	5.6337E-07	16594	DP1145_11	153.49	119.12			20489000	348	335	325	571;572	810;811;812;813	811	248	4	9606
DDGLFSGDPNWFPK	Unmodified	1593.71	0.70997257	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	22.4	22.4	2	0.0057328	17740	DP1145_15	139.31	84.223			0	349	253	326	573	814	814		1	9606
DEILPTTPISEQK	Unmodified	1469.7613	0.76133944	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		18.165	18.165	2	0.013096	12522	DP1145_14	80.24	31.638			39010000	350	210	327	574	815	815		1	9606
DELHIVEAEAMNYEGSPIK	Unmodified	2144.0096	0.0095849934	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0.707			1	2	1	20.743	20.743	2;3	2.9371E-204	16139	DP1145_14	280.5	243.25			613370000	351	134	328	575;576;577;578	816;817;818;819;820	817		5	9606
DELHIVEAEAMNYEGSPIK	Oxidation (M)	2160.0045	0.0044996155	134	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.33	0.471				2	1	20.138	20.138	2;3	1.676E-17	15349	DP1145_14	174.39	129.28			1474899999.9999998	352	134	328	579;580;581	821;822;823;824;825	823	98	5	9606
DEPIHILNVAIK	Unmodified	1360.7715	0.77145062	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					19.16	19.16	2;3	2.5750999999999997E-43	12914	DP1145_11	167.93	91.456			927600000	353	441	329	582;583	826;827;828;829;830	827		5	9606
DFFNYLPLSSQDPAPVR	Unmodified	1964.9632	0.96322715	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.33	1.11	2	1	2	1		22.308	22.308	2;3	2.6342E-10	18486	DP1145_14	188.15	130.58			409440000	354	124	330	584;585;586;587;588;589	831;832;833;834;835;836;837;838;839;840;841;842;843	842		13	9606
DFHVDEQTTVK	Unmodified	1317.6201	0.62009493	19	CON__P34955			yes	yes	0	0	0	3	0			1			15.642	15.642	2	2.2062E-09	8703	DP1145_13	154.84	110.2		+	60255000	355	19	331	590	844	844		0	
DFTATFGPLDSLNTR	Unmodified	1653.7999	0.79985021	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.943	1	3	1	1		21.706	21.706	2	1.1885E-222	17810	DP1145_13	279.9	221.2			465290000	356	164	332	591;592;593;594;595;596	845;846;847;848;849;850;851;852;853	851		8	9606
DFTVASPAEFVTR	Unmodified	1438.7092	0.70924429	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.75	1.48	1	1	1		1	20.358	20.358	2	9.8946E-103	14500	DP1145_11	232.41	162.35			517730000	357	441;43	333	597;598;599;600	854;855;856;857;858;859;860;861;862;863	856		10	9606
DFYVAFQDLPTR	Unmodified	1470.7143	0.71432967	475	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	2	0		1				21.35	21.35	2	0.00017418	18284	DP1145_12	116.23	83.627			6910000	358	475	334	601	864;865	865		2	9606
DGLDYILGALESGK	Unmodified	1449.7351	0.73512469	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3.29	1.39	1	1	2	1	2	23.941	23.941	2;3	2.8621E-85	21163	DP1145_13	221.6	173.51			577880000	359	520	335	602;603;604;605;606;607;608	866;867;868;869;870;871;872;873;874;875;876;877	870		12	9606
DGNASGTTLLEALDCILPPTRPTDKPLR	Unmodified	3020.5601	0.56008422	392	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	2	4	0				1		21.982	21.982	3	0.0003833	18040	DP1145_14	69.084	43.564			8810700	360	392	336	609	878	878		1	9606
DGQVINETSQHHDDLE	Unmodified	1835.7922	0.79219865	145	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			15.437	15.437	2	0.0021839	8636	DP1145_13	126.12	98.637			73331000	361	145	337	610	879	879		1	9606
DGSSSVPLSFAR	Unmodified	1221.599	0.59896556	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.5	1.12	1	1	1	1		18.405	18.405	2	3.4075E-07	13873	DP1145_12	171.33	125.36			702190000	362	520	338	611;612;613;614	880;881;882;883;884;885	881		6	9606
DGTVLCELINALYPEGQAPVK	Unmodified	2286.1566	0.15658358	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					2	25.04	25.04	2;3	2.1202999999999998E-79	21281	DP1145_15	214.18	181.7			6643100	363	253	339	615;616	886;887;888;889;890	888		5	9606
DGTVLCELINALYPEGQAPVKK	Unmodified	2414.2515	0.2515466	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	1	5	0					1	23.509	23.509	3	1.151E-08	19180	DP1145_15	149.12	124.57			23552000	364	253	340	617	891;892;893;894	893		4	9606
DHAVVVGVYRPPPK	Unmodified	1532.8463	0.8463469	205	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		15.087	15.087	3	4.5561E-07	7465	DP1145_14	153.49	121.06			218390000	365	205	341	618	895;896;897	895		3	9606
DHPLPEVAHVK	Unmodified	1240.6564	0.65642086	172	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	5	0					1	14.516	14.516	3	2.7376E-05	6138	DP1145_15	134.57	94.412			2621600	366	172	342	619	898	898		1	9606
DHQYGLPIK	Unmodified	1069.5556	0.55564418	666	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					16.284	16.284	2	4.0894E-09	8242	DP1145_11	143.28	84.47			18667000	367	666	343	620	899;900	899		2	9606
DHTLVQTIAR	Unmodified	1152.6251	0.62512073	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0			1			15.915	15.915	2	0.024626	9217	DP1145_13	93.598	61.643			0	368	480	344	621	901	901		1	9606
DIDAFWLQR	Unmodified	1162.5771	0.57710791	86	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					21.671	21.671	2	1.4533E-05	16611	DP1145_11	126.28	72.503			7525500	369	86	345	622	902	902		1	9606
DIDIHEVR	Unmodified	995.50361	0.50360861	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				15.672	15.672	2	0.0010202	9319	DP1145_12	120.46	79.155			27935000	370	409	346	623	903;904	903		2	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	Unmodified	3263.5066	0.5065879	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0.816	1	1	1			21.461	21.461	3	1.7402E-112	16235	DP1145_11	219.38	155.37		+	166600000	371	20	347	624;625;626	905;906;907;908;909	905		5	9606
DIIVIGNDITYR	Unmodified	1390.7456	0.7456298	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.225	20.225	2	0.0011748	14579	DP1145_11	102.05	64.351			332060000	372	441	348	627	910;911;912	910		3	9606
DILPCLDGYLK	Unmodified	1305.6639	0.663874	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.78	21.78	2	0.019304	16716	DP1145_11	81.95	30.758			4272200	373	400	349	628	913;914	913		2	9606
DINAYNCEEPTEK	Unmodified	1581.6617	0.66170175	228	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	4	0				2		16.079	16.079	2	4.9722999999999996E-43	9008	DP1145_14	236.77	191.92			0	374	228	350	629;630	915;916	915		2	9606
DIPGLTDTTVPR	Unmodified	1283.6721	0.67213051	369	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		18.76	18.76	2	1.0494E-08	13310	DP1145_14	167.12	119.55			203750000	375	369	351	631	917;918	917		2	9606
DIPSLPPLPPLPPLPPLDR	Unmodified	2043.1768	0.17684874	299	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	3	0			1			23.896	23.896	2	0.0027136	21135	DP1145_13	107.99	87.255			2379500	376	299	352	632	919;920	919		2	9606
DIPVLVATDVAAR	Unmodified	1338.7507	0.75071518	569	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				20.078	20.078	2	0.026396	16385	DP1145_12	69.721	41.024			17291000	377	569	353	633	921	921		1	9606
DISEVIALGVPNPR	Unmodified	1478.8093	0.80929269	457	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	3	0			1			21.178	21.178	2	0.025162	17358	DP1145_13	119.53	77.134			27615000	378	457	354	634	922	922		0	9606
DISTNKVEQIPYGER	Unmodified	1747.8741	0.87407779	299	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	2	0		1				16.776	16.776	3	0.010844	11178	DP1145_12	99.566	59.288			16454000	379	299	355	635	923	923		0	9606
DIVEELSALK	Unmodified	1115.6074	0.60740498	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.272	21.272	2	1.9181E-08	18110	DP1145_12	144.12	88.111			118900000	380	278	356	636	924;925	924		2	9606
DKCLDLVPAIK	Unmodified	1270.6955	0.69550848	801				yes	yes	0	0	1	3	0			1			16.055	16.055	3	0.012511	9534	DP1145_13	76.943	23.706	+		53636000	381	801	357	637	926;927	926		2	9606
DKEVEFGGPAPR	Unmodified	1300.6412	0.64116473	299	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	1	2	0		1				15.368	15.368	3	0.014756	8812	DP1145_12	103.14	65.454			13253000	382	299	358	638	928	928		0	9606
DKFEEDRIYR	Unmodified	1369.6626	0.66262845	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					15.208	15.208	2	0.0010276	6656	DP1145_11	120.31	66.55			10448000	383	441	359	639	929	929		1	9606
DKLEEILR	Unmodified	1014.571	0.5709599	47	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	1	2	0		1				17.576	17.576	2	0.00014567	12009	DP1145_12	138.83	40.196			193830000	384	47	360	640	930	930		0	9606
DKPHVNVGTIGHVDHGK	Unmodified	1808.9282	0.92817905	296	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	3.5	0.5			1	1		13.861	13.861	3;4	0.0046366	6194	DP1145_13	119.62	79.433			51675000	385	296	361	641;642	931;932	931		1	9606
DKPTETLLNTVK	Unmodified	1357.7453	0.74529545	649	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	0	1	3	0			1			16.878	16.878	2	4.6761E-22	10697	DP1145_13	181.87	116.72			26837000	386	649	362	643	933	933		0	9606
DLAEWLEK	Unmodified	1002.5022	0.50221163	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.809	20.809	2	0.026204	15377	DP1145_11	92.47	29.812			25605000	387	441	363	644	934	934		1	9606
DLALVNDQLLGFVR	Unmodified	1571.8671	0.86714192	510	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				22.908	22.908	2	0.0013087	20467	DP1145_12	125.72	91.342			0	388	510	364	645	935	935		1	9606
DLDEEIFDDDDFYHQLLR	Unmodified	2297.0124	0.012421765	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	3	0			2			22.84	22.84	2;3	1.9171E-110	19585	DP1145_13	230.67	183.19			37971000	389	734	365	646;647	936;937;938;939	936		4	9606
DLEGSDIDTR	Unmodified	1119.5044	0.50439647	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				15.952	15.952	2	0.0028657	9826	DP1145_12	113.71	56.529			0	390	322	366	648	940	940		1	9606
DLEKPFLLPVEAVYSVPGR	Unmodified	2128.1568	0.15684158	296	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		21.804	21.804	3	0.0013916	17707	DP1145_14	115.74	97.958			31154000	391	296	367	649	941	941		1	9606
DLENLPATNFSNLVHLVAHLLK	Unmodified	2457.338	0.33799384	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	0			2			24.734	24.734	3;4	8.7444E-05	22305	DP1145_13	126.25	82.147			8460000	392	520	368	650;651	942;943;944;945;946	946		5	9606
DLFEDELVPLFEK	Unmodified	1592.7974	0.7973906	69	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	3	0			1			23.975	23.975	2	3.7168E-06	21283	DP1145_13	145.46	96.476			5608700	393	69	369	652	947;948	947		2	9606
DLGFNGAPYR	Unmodified	1108.5302	0.53015772	789	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					18.26	18.26	2	0.033764	11495	DP1145_11	75.738	40.443			10009000	394	789	370	653	949	949		1	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	2 Oxidation (M)	4299.6572	0.65716542	265	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	2	0	4	0				2		17.019	17.019	3;4	1.642E-58	10515	DP1145_14	182.73	182.49			206990000	395	265	371	654;655	950;951;952	950	196;197	3	9606
DLILNPR	Unmodified	839.4865	0.48650199	498	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				17.445	17.445	2	0.038649	12174	DP1145_12	85.306	46.488			3490500	396	498	372	656	953	953		1	9606
DLITQATLLYTMADK	Oxidation (M)	1711.8702	0.87023797	538	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	1	0	2	0		1				22.581	22.581	2	0.0027175	20033	DP1145_12	140.24	101.06			1337700	397	538	373	657	954	954	412	1	9606
DLKPQNLLIDDKGTIK	Unmodified	1810.02	0.020013746	130	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	2	4	0				1		17.659	17.659	3	0.038707	11720	DP1145_14	104.16	67.94			129360000	398	130	374	658	955	955		1	9606
DLLALFNSFKPK	Unmodified	1391.7813	0.78128702	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2.5	0.5		1	1			22.872	22.872	2	4.0799E-07	19728	DP1145_13	139.43	83.884			28938000	399	698	375	659;660	956;957	957		1	9606
DLLDTVLPHLYNETK	Unmodified	1769.92	0.91996535	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		2				21.889	21.889	2;3	1.3361E-169	19000	DP1145_12	260.81	173.63			8624700	400	566	376	661;662	958;959;960;961;962	961		5	9606
DLPEHAVLK	Unmodified	1020.5604	0.56039521	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1.5	0.5	1	1				15.379	15.379	2	0.0023752	9044	DP1145_12	107.9	31.049			195160000	401	409	377	663;664	963;964;965	964		3	9606
DLQSNVEHLTEK	Unmodified	1411.6943	0.69432251	413	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	3	0			1			17.5	17.5	2	0.015193	11750	DP1145_13	98.898	37.134			0	402	413	378	665	966	966		1	9606
DLSDAIEQTFQR	Unmodified	1421.6787	0.67867245	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				21.272	21.272	2	4.8598E-102	18170	DP1145_12	230.06	174.53			10214000	403	534	379	666	967;968	967		2	9606
DLSHIGDAVVISCAK	Unmodified	1583.7977	0.79774172	167	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				2		18.46	18.46	2;3	0.0007562	12729	DP1145_14	120.9	102.23			24574000	404	167	380	667;668	969;970	969		1	9606
DLTTAGAVTQCYR	Unmodified	1454.6824	0.68237762	414	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	17.303	17.303	2	0.00078445	10551	DP1145_15	117.02	86.768			95564000	405	414	381	669	971;972	972		2	9606
DLYANTVLSGGTTMYPGIADR	Oxidation (M)	2230.0576	0.057597819	335;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		20.362	20.362	2	0.00083585	15713	DP1145_14	131.24	90.146			50785000	406	335;389	382	670	973	973	249	1	9606
DLYANTVLSGGTTMYPGIADR	Unmodified	2214.0627	0.062683196	335;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		21.165	21.165	2	0.00034276	16868	DP1145_14	125.67	92.48			5881200	407	335;389	382	671	974	974		1	9606
DLYDIFYSSGGK	Unmodified	1363.6296	0.62959699	531	Q5VUA4	ZNF318	Zinc finger protein 318	yes	yes	0	0	0	2	0		1				21.819	21.819	2	0.016665	18957	DP1145_12	80.102	47.687			1392500	408	531	383	672	975	975		1	9606
DLYLIPLSAQDPVPSK	Unmodified	1754.9455	0.94545182	668	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	2	0		1				21.26	21.26	2	0.0046527	18290	DP1145_12	97.957	61.273			4976600	409	668	384	673	976;977	977		2	9606
DMAEMQRVWKEK	Oxidation (M)	1565.733	0.73303298	492	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	1	2	2	0.816	1	1	1			17.977	17.977	2	0.0082454	11228	DP1145_11	106.88	36.482			3987199999.9999995	410	492	385	674;675;676	978;979;980	978	372	3	9606
DMAGLLKPTACTMLVSSLR	Unmodified	2063.0577	0.057737935	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				20.964	20.964	3	0.0084943	17752	DP1145_12	74.744	58.978			6248700	411	164	386	677	981	981		1	9606
DMPIQAFLLYQEPVLGPVR	Oxidation (M)	2201.1555	0.15546137	9	CON__P02666			yes	yes	0	1	0	2.78	1.31	2	2	2	2	1	23.138	23.138	2;3	1.9572E-58	20736	DP1145_12	203.85	146.9		+	301370000	412	9	387	678;679;680;681;682;683;684;685;686	982;983;984;985;986;987;988;989;990;991;992;993;994;995;996;997;998;999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009	993	3	28	
DMPIQAFLLYQEPVLGPVR	Unmodified	2185.1605	0.16054675	9	CON__P02666			yes	yes	0	0	0	2.67	1.25	2		2	2		24.069	24.069	2;3	0	19864	DP1145_11	325.74	278.7		+	77559000	413	9	387	687;688;689;690;691;692	1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021;1022;1023;1024	1011		15	
DNHLLGTFDLTGIPPAPR	Unmodified	1933.0058	0.005760665	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			2			20.579	20.579	2;3	0.0029001	16554	DP1145_13	137.8	95.701			20669000	414	160	388	693;694	1025;1026	1025		2	9606
DNIQGITKPAIR	Unmodified	1324.7463	0.7462985	370	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	15.739	15.739	3	9.6772E-06	8114	DP1145_15	138.63	92.973			1779099999.9999998	415	370	389	695	1027	1027		1	9606
DNLEFFLAGIGR	Unmodified	1350.6932	0.6932003	295	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					22.999	22.999	2	0.028085	18503	DP1145_11	82.831	34.407			0	416	295	390	696	1028	1028		1	9606
DNSAQKNERTGK	Acetyl (Protein N-term)	1388.6644	0.66441937	528	Q5TH74	STPG1	O(6)-methylguanine-induced apoptosis 2	yes	yes	1	0	2	4	0				1		14.834	14.834	2	0.010417	7087	DP1145_14	80.231	18.452			0	417	528	391	697	1029	1029		1	9606
DNTCVVEFQFMLPTSHPNR	Oxidation (M)	2307.0412	0.041236248	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.936	19.936	3	0.020343	14230	DP1145_11	66.068	49.478			62483000	418	441	392	698	1030	1030	312	1	9606
DNTCVVEFQFMLPTSHPNR	Unmodified	2291.0463	0.046321626	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.718	20.718	3	0.0014253	15292	DP1145_11	114.28	92.6			18292000	419	441	392	699	1031;1032	1031		2	9606
DNTQLLINQLWQLPTER	Unmodified	2081.0906	0.090552927	489	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				2		23.672	23.672	2;3	0	20327	DP1145_14	311.95	238.68			9146800	420	489	393	700;701	1033;1034;1035;1036;1037	1033		5	9606
DPSLPLLELQDIMTSVSGR	Oxidation (M)	2086.0616	0.061620564	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					23.211	23.211	2	3.0223E-16	18589	DP1145_11	170.74	141.2			13675000	421	441	394	702	1038;1039	1039	313	2	9606
DPSLPLLELQDIMTSVSGR	Unmodified	2070.0667	0.066705942	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					25.463	25.463	2	2.5936E-34	21753	DP1145_11	185.32	147.38			2529200	422	441	394	703	1040	1040		1	9606
DQLKSLHGTVMK	Oxidation (M)	1371.718	0.71803484	559	Q7Z7A1	CNTRL	Centriolin	yes	yes	0	1	1	3	0			1			14.004	14.004	3	0.016054	6373	DP1145_13	78.488	20.356			0	423	559	395	704	1041	1041	422	1	9606
DRLLASTLVHSVK	Unmodified	1437.8304	0.83036248	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	3	0			1			16.869	16.869	3	0.0065811	10748	DP1145_13	88.282	58.979			0	424	735	396	705	1042	1042		1	9606
DRPFFPGLVK	Unmodified	1174.6499	0.64987892	68	O60361;P22392	NME2P1;NME2	Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase B	yes	no	0	0	1	5	0					1	18.592	18.592	2	0.023651	12365	DP1145_15	113.62	45.725			48280000	425	68	397	706	1043	1043		0	9606
DSEEIDDVTR	Unmodified	1177.5099	0.50987578	779	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		16.12	16.12	2	0.0073689	9138	DP1145_14	99.136	76.644			42650000	426	779	398	707	1044	1044		1	9606
DSFDNCSLGESSK	Unmodified	1444.5776	0.57763777	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0		1				16.375	16.375	2	0.042514	10728	DP1145_12	64.224	38.928			6848200	427	529	399	708	1045	1045		1	9606
DSTLIMQLLR	Oxidation (M)	1204.6486	0.64855829	357;385;348	P61981;P27348;Q04917;P31946;P31947;P62258;P63104	YWHAG;YWHAQ;YWHAH;YWHAB;SFN;YWHAE;YWHAZ	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein eta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta	no	no	0	1	0	3	1.58	1	1		1	1	21.584	21.584	2	6.3705E-08	18529	DP1145_12	145.16	61.509			32617000	428	348;357;385	400	709;710;711;712	1046;1047;1048;1049;1050	1047	259	5	9606
DTAASGYGTQNIR	Unmodified	1352.6321	0.6320566	777	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		15.5	15.5	2	0.0086382	8190	DP1145_14	85.813	33.234			54922000	429	777	401	713	1051	1051		1	9606
DTGILDSIGR	Unmodified	1045.5404	0.54038805	111	P02686	MBP	Myelin basic protein	yes	yes	0	0	0	2.33	1.25	1	1		1		19.066	19.066	2	4.4298E-46	14800	DP1145_12	199.7	121.96			396850000	430	111	402	714;715;716	1052;1053;1054;1055;1056	1054		5	9606
DTGKTPVEPEVAIHR	Unmodified	1647.858	0.8580338	336	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	1	5	0					1	15.126	15.126	3	1.6988E-145	7037	DP1145_15	245.4	211.43			100260000	431	336	403	717	1057;1058	1057		2	9606
DTLYEAVR	Unmodified	965.48181	0.48181054	379	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	4	0				1		16.982	16.982	2	1.9605E-05	10463	DP1145_14	120.49	53.454			0	432	379	404	718	1059	1059		1	9606
DTPTSAGPNSFNK	Unmodified	1334.6103	0.61025853	598	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	4.5	0.5				1	1	15.193	15.193	2	9.8458E-06	7607	DP1145_14	167.93	122.91			201090000	433	598	405	719;720	1060;1061;1062	1060		3	9606
DTSYLFITGPDVVK	Unmodified	1553.7977	0.79772495	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		21.112	21.112	2	4.9264E-69	16767	DP1145_14	238.51	214.52			523740000	434	124	406	721;722;723	1063;1064;1065;1066;1067;1068	1068		6	9606
DVAGDASESALLK	Unmodified	1274.6354	0.63541065	173	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	0	2	0		1				17.676	17.676	2	0.0012852	12700	DP1145_12	136.49	88.398			5545000	435	173	407	724	1069	1069		0	9606
DVDDGLQAAEEVGYPVMIK	Oxidation (M)	2063.9721	0.97213685	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					20.648	20.648	2;3	0.016001	14972	DP1145_11	115.12	80.217			34633000	436	441	408	725;726	1070;1071	1071	314	2	9606
DVDDGLQAAEEVGYPVMIK	Unmodified	2047.9772	0.97722223	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.542	21.542	2;3	2.7607000000000004E-35	16318	DP1145_11	246.64	206.26			82142000	437	441	408	727;728	1072;1073;1074;1075	1072		4	9606
DVDEAYMNKVELESR	Unmodified	1796.8251	0.82507869	14	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	3	0			1			17.841	17.841	2	2.034E-17	12293	DP1145_13	169.09	136.23		+	0	438	14	409	729	1076	1076		1	9606
DVDSAYMNKVELEAK	Unmodified	1710.8135	0.81345137	25	CON__Q8BGZ7			yes	yes	0	0	1	1	0	1					16.567	16.567	3	0.004174	8641	DP1145_11	75.669	0		+	9590600	439	25	410	730	1077	1077		1	
DVESYLQPK	Unmodified	1077.5342	0.53424004	618	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4	0				1		17.944	17.944	2	0.0079031	12006	DP1145_14	106.04	45.36			0	440	618	411	731	1078	1078		1	9606
DVFANYLTSNFQAPGVK	Unmodified	1869.9261	0.92611336	535	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	2	0		1				21.731	21.731	2	0.0031491	18820	DP1145_12	148.68	122.7			2097500	441	535	412	732	1079	1079		1	9606
DVFLAWVASR	Unmodified	1162.6135	0.61349341	94	O94842	TOX4	TOX high mobility group box family member 4	yes	yes	0	0	0	3	1		1		1		22.263	22.263	2	1.0183000000000001E-27	18345	DP1145_14	175.91	126.49			11496000	442	94	413	733;734	1080;1081;1082	1081		3	9606
DVFQLKDLEK	Unmodified	1233.6605	0.66050319	677	Q9BWT6	MND1	Meiotic nuclear division protein 1 homolog	yes	yes	0	0	1	5	0					1	17.845	17.845	3	0.0062447	11347	DP1145_15	94.409	9.1188			61216000	443	677	414	735	1083	1083		1	9606
DVHTLLDR	Unmodified	967.50869	0.50869399	716	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	4	0				1		16.395	16.395	2	0.038505	9635	DP1145_14	83.753	39.031			78811000	444	716	415	736	1084	1084		1	9606
DVIEEYFK	Unmodified	1041.5019	0.50187728	216	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	19.991	19.991	2	0.01154	14592	DP1145_15	101.64	51.517			38148000	445	216	416	737	1085	1085		1	9606
DVLAHQVPNAK	Unmodified	1190.6408	0.6407708	738	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	0	3	0			1			14.639	14.639	2	1.6523E-05	7226	DP1145_13	138.08	97.301			55662000	446	738	417	738	1086	1086		1	9606
DVLLPWYNAYR	Unmodified	1408.7139	0.71393574	266	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				22.07	22.07	2	0.033822	19346	DP1145_12	72.547	32.546			2023600	447	266	418	739	1087;1088	1088		2	9606
DVNAAIATIK	Unmodified	1014.571	0.5709599	393;547;662	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.4	1.36	1		1	2	1	17.569	17.569	1;2	0.0047447	11538	DP1145_14	116.52	43.284			3730199999.9999995	448	393;547;662	419	740;741;742;743;744	1089;1090;1091;1092;1093;1094;1095;1096;1097	1095		8	9606
DVNFEFPEFQL	Unmodified	1383.6347	0.63468237	349	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	25.56	25.56	2	0.036658	22065	DP1145_15	105.17	71.421			23049000	449	349	420	745	1098	1098		0	9606
DVNQQEFVR	Unmodified	1133.5465	0.54653606	256	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	16.187	16.187	2	0.0088459	8687	DP1145_15	98.523	63.167			56694000	450	256	421	746	1099;1100	1099		2	9606
DVQIGDIVTVGECRPLSK	Unmodified	1985.0252	0.025175478	362	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	19.29	19.29	3	0.012555	13479	DP1145_15	116	82.558			279240000	451	362	422	747	1101	1101		1	9606
DVWGIEGPIDAAFTR	Unmodified	1645.81	0.81002097	24	CON__Q3ZBS7;P04004	VTN	Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B	yes	no	0	0	0	3.5	0.5			1	1		22.855	22.855	2	5.8912E-06	19734	DP1145_13	151.13	107.71		+	15730000	452	24	423	748;749	1102;1103;1104	1102		3	9606
DYFEQYGK	Unmodified	1048.4502	0.45017606	151	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		17.759	17.759	2	0.043095	11729	DP1145_14	111.82	72.597			226240000	453	151	424	750	1105	1105		0	9606
DYHFKVDNDENEHQLSLR	Unmodified	2258.0352	0.035222893	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		16.759	16.759	3;4	3.6879E-23	10100	DP1145_14	179.14	151.43			278920000	454	134	425	751;752	1106;1107	1107		1	9606
DYIPVDQEELRDYVK	Unmodified	1880.9156	0.91560825	471	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	1	0	1					19.236	19.236	3	0.039307	13017	DP1145_11	68.044	41.315			0	455	471	426	753	1108	1108		1	9606
DYLHLPPEIVPATLR	Unmodified	1732.9512	0.9512059	288	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					2	20.671	20.671	2;3	0.0074702	15527	DP1145_15	63.29	32.747			33771000	456	288	427	754;755	1109;1110	1110		2	9606
DYPVVSIEDPFDQDDWGAWQK	Unmodified	2509.1074	0.10738478	133	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3	0			1			23.698	23.698	2	0.011693	20947	DP1145_13	101.61	87.006			10795000	457	133	428	756	1111	1111		1	9606
DYQELMNTK	Unmodified	1140.5121	0.51212439	13	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	1	0	1					17.461	17.461	2	2.5399E-09	10270	DP1145_11	145.16	80.948		+	108860000	458	13	429	757	1112	1112		1	9606
DYSLLPLLAAAPQVGEK	Unmodified	1783.972	0.97200092	254	P38432	COIL	Coilin	yes	yes	0	0	0	3.5	0.5			1	1		23.037	23.037	2	0.0022591	19508	DP1145_14	104.24	71.187			8350500	459	254	430	758;759	1113;1114;1115	1115		3	9606
EAAENSLVAYK	Unmodified	1193.5928	0.59281755	357	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	3	2	1				1	16.215	16.215	2	4.7533E-18	8267	DP1145_11	168.83	105.26			62731000	460	357	431	760;761	1116;1117;1118	1116		3	9606
EAAGTTAAAGTGGATEQPPR	Unmodified	1812.8602	0.86021864	57	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2.5	0.5		1	1			14.353	14.353	2	0.0014756	7568	DP1145_12	168	129.37			36378000	461	57	432	762;763	1119;1120	1119		2	9606
EAAPAPPTEEDIWFDDVDPADIEAAIGPEAAK	Unmodified	3349.5514	0.55141283	686	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			23.52	23.52	3	1.0845E-09	20618	DP1145_13	75.88	62.539			7974500	462	686	433	764	1121	1121		1	9606
EAFAGDDVIRDFLK	Unmodified	1594.7991	0.79912193	673	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	1	2	0		1				21.091	21.091	2	0.00015702	17941	DP1145_12	147.58	77.905			7470300	463	673	434	765	1122	1122		1	9606
EAGGNMSIQFLGTVYK	Unmodified	1713.8396	0.83960654	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.479	20.479	2	7.6308E-06	16287	DP1145_13	193.49	146.26			183870000	464	123	435	766	1123	1123		1	9606
EAIEGTYIDK	Unmodified	1137.5554	0.55536941	362	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	16.286	16.286	2	0.0064572	8913	DP1145_15	100.25	50.709			71602000	465	362	436	767	1124	1124		1	9606
EAKGEEPDIAVPK	Unmodified	1381.7089	0.70890994	539	Q6PK04	CCDC137	Coiled-coil domain-containing protein 137	yes	yes	0	0	1	4	0				1		15.245	15.245	3	0.018411	7726	DP1145_14	71.806	37.111			7243700	466	539	437	768	1125	1125		0	9606
EAMEDGEIDGNKVTLDWAKPK	Oxidation (M)	2361.1158	0.11584098	199	P19338	NCL	Nucleolin	yes	yes	0	1	2	2	0		1				17.576	17.576	4	0.034447	12372	DP1145_12	53.327	19.323			89961000	467	199	438	769	1126	1126	165	0	9606
EANNFLWPFK	Unmodified	1264.6241	0.6240581	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	2.5	1.5	1			1		21.848	21.848	2	1.0033E-05	17686	DP1145_14	122.18	62.245			43414000	468	195	439	770;771	1127;1128;1129	1128		3	9606
EAPPMEKPEVVK	Oxidation (M)	1368.6959	0.69590241	373	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	1	5	0					1	13.799	13.799	3	0.016715	5133	DP1145_15	67.08	40.293			1215900	469	373	440	772	1130	1130	272	1	9606
EAPPMEKPEVVK	Unmodified	1352.701	0.70098779	373	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	1	5	0					1	14.701	14.701	3	9.3635E-05	6461	DP1145_15	111.52	79.803			44817000	470	373	440	773	1131;1132	1132		2	9606
EAPVDVLTQIGR	Unmodified	1296.7038	0.70376498	671	Q9BVC6	TMEM109	Transmembrane protein 109	yes	yes	0	0	0	5	0					1	19.591	19.591	2	0.00026205	14173	DP1145_15	105.2	65.573			24286000	471	671	441	774	1133	1133		1	9606
EASFEYLQNEGER	Unmodified	1570.69	0.68996541	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					17.961	17.961	2	4.1353E-42	11165	DP1145_11	208.33	176.12			365170000	472	441;43	442	775	1134;1135;1136	1134		3	9606
EATNPPVIQEEKPK	Unmodified	1578.8253	0.82533668	230	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	3	0			1			14.431	14.431	3	0.01571	6870	DP1145_13	68.171	31.879			13780000	473	230	443	776	1137	1137		1	9606
EAVAMESYAK	Unmodified	1097.5063	0.50631073	399	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			15.72	15.72	2	0.041188	8898	DP1145_13	81.972	44.244			0	474	399	444	777	1138	1138		1	9606
EAVGDLLDAFK	Unmodified	1176.6027	0.60265396	419	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2	0		1				21.551	21.551	2	0.00044073	18526	DP1145_12	128.27	65.723			12849000	475	419	445	778	1139	1139		1	9606
EAYPGDVFYLHSR	Unmodified	1552.731	0.73104237	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		18.394	18.394	2;3	0.0021729	13288	DP1145_13	101.32	78.435			405910000	476	217	446	779;780;781	1140;1141;1142;1143;1144	1141		5	9606
ECADLWPR	Unmodified	1045.4651	0.46511462	372	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	17.935	17.935	2	0.017729	11061	DP1145_15	98.418	37.658			70237000	477	372	447	782	1145;1146	1145		2	9606
ECCQPVLVYIPPQAELR	Unmodified	2071.0231	0.023066988	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.32	20.32	3	0.0011665	14592	DP1145_11	108.25	65.307			45156000	478	441	448	783	1147	1147		1	9606
ECLPLIIFLR	Unmodified	1272.7264	0.72641468	367	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		23.135	23.135	2	0.0080558	19567	DP1145_14	98.299	45.21			3159400	479	367	449	784	1148	1148		1	9606
ECPSDECGAGVFMASHFDR	Unmodified	2170.8507	0.85065829	384	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	0	0	5	0					1	18.592	18.592	3	0.0083761	12289	DP1145_15	70.555	54.243			14034000	480	384	450	785	1149	1149		1	9606
EDAPIGPHLQSMPSEQIR	Oxidation (M)	2019.9684	0.96838888	469	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	1	0	2	0		1				16.5	16.5	3	0.012244	10724	DP1145_12	73.593	48.036			5893600	481	469	451	786	1150	1150	358	1	9606
EDELWASFLNDVGPK	Unmodified	1718.8152	0.81516593	745	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	0	4	0				1		23.149	23.149	2	9.6558E-70	19636	DP1145_14	213.63	131.14			6087900	482	745	452	787	1151;1152	1151		2	9606
EDFDSLLQSAKK	Unmodified	1379.6933	0.69325988	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	4	0				1		16.859	16.859	3	0.035473	10499	DP1145_14	61.48	30.194			17662000	483	142	453	788	1153	1153		1	9606
EDGNEEDKENQGDETQGQQPPQR	Unmodified	2627.0968	0.096773109	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0.816			1	1	1	13.026	13.026	3	1.1747E-186	4752	DP1145_14	260.98	239.98			78952000	484	390	454	789;790;791	1154;1155;1156;1157;1158;1159;1160;1161;1162;1163;1164	1159		11	9606
EDITQSAQHALR	Unmodified	1367.6793	0.67934115	437	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	3	0			1			15.842	15.842	3	0.019633	9031	DP1145_13	117.52	67.371			28684000	485	437	455	792	1165	1165		0	9606
EDLSGIAEMFK	Unmodified	1238.5853	0.58528933	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.528	21.528	2	0.0253	18502	DP1145_12	76.943	38.857			3532600	486	278	456	793	1166	1166		1	9606
EDMAALEKDYEEVGVDSVEGEGEEEGEEY	Oxidation (M)	3251.2984	0.29835377	393;547	P68363;Q71U36	TUBA1B;TUBA1A	Tubulin alpha-1B chain;Tubulin alpha-1A chain	no	no	0	1	1	3	0			1			20.579	20.579	3	2.5187E-21	16457	DP1145_13	165.47	143.23			28478000	487	393;547	457	794	1167	1167	289	0	9606
EDPFVFIPEDDPLFPPIEK	Unmodified	2243.1038	0.10380295	427	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			1			23.892	23.892	2	0.0031566	21168	DP1145_13	112.08	85.141			4207100	488	427	458	795	1168	1168		1	9606
EDSMDMDMSPLRPQNYLFGCELK	3 Oxidation (M)	2823.186	0.18598751	134	P06748	NPM1	Nucleophosmin	yes	yes	0	3	1	4	0				1		19.961	19.961	3	0.020789	15083	DP1145_14	48.968	33.596			25301000	489	134	459	796	1169	1169	99;100;101	1	9606
EDSTADDSKDSVAQGTTNVHSSEHAGR	Unmodified	2800.2132	0.21319985	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.67	0.943	1	1	3	1		13.028	13.028	3;4;5	4.8727E-14	5310	DP1145_13	143.47	129.41			35392000	490	278	460	797;798;799;800;801;802	1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180	1174		11	9606
EDTVQSVKPWLTEIMNNYK	Oxidation (M)	2310.1202	0.12019808	696	Q9H3G5	CPVL	Probable serine carboxypeptidase CPVL	yes	yes	0	1	1	3	0			1			15.337	15.337	5	0.028775	8523	DP1145_13	50.827	25.923			29335000	491	696	461	803	1181	1181	503	1	9606
EDVNLMMSSGQILGIRFLDK	Unmodified	2265.1497	0.14972406	65	O43829	ZBTB14	Zinc finger and BTB domain-containing protein 14	yes	yes	0	0	1	1	0	1					20.04	20.04	3	0.0014096	14390	DP1145_11	111.22	65.498			27676000	492	65	462	804	1182	1182		1	9606
EEAAWASSSAGNPADGLATEPESVFALDVLR	Unmodified	3159.4997	0.49965203	87	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		23.192	23.192	3	4.3378E-09	19712	DP1145_14	69.149	44.505			3098400	493	87	463	805	1183;1184	1183		2	9606
EEAENTLQSFR	Unmodified	1322.6103	0.61025853	145	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			17.078	17.078	2	3.0338E-33	11062	DP1145_13	189.18	124.52			127090000	494	145	464	806	1185	1185		1	9606
EEAISNMVVALK	Oxidation (M)	1318.6803	0.68025235	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					17.261	17.261	2	2.2779E-42	9963	DP1145_11	198.61	129.77			277040000	495	441;43	465	807	1186;1187	1186	31	2	9606
EEAISNMVVALK	Unmodified	1302.6853	0.68533773	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					19.252	19.252	2	3.378E-16	13037	DP1145_11	192.64	139.55			127340000	496	441;43	465	808	1188;1189;1190;1191	1188		4	9606
EEAQALEDLTGFK	Unmodified	1449.6987	0.69873919	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				20.078	20.078	2	8.0864E-69	16226	DP1145_12	211.64	143.08			61106000	497	278	466	809	1192;1193	1192		2	9606
EEAQSLEDLAGFK	Unmodified	1435.6831	0.68308912	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				19.677	19.677	2	0.00046838	15891	DP1145_12	108.43	45.885			106770000	498	278	467	810	1194;1195	1194		2	9606
EEEIAALVIDNGSGMCK	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	389	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	2.75	1.3	1	1		2		23.019	23.019	2	1.3318E-10	19501	DP1145_14	158.86	117.75			25748000	499	389	468	811;812;813;814	1196;1197;1198;1199;1200;1201;1202;1203	1202	283	8	9606
EEFLIPIYHQVAVQFADLHDTPGR	Unmodified	2794.4079	0.40786432	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.67	0.943	2		1			21.808	21.808	3;4	1.0259000000000001E-24	16768	DP1145_11	172.77	155.26			24241000	500	441	469	815;816;817	1204;1205;1206;1207	1204		4	9606
EEGIGPENLR	Unmodified	1112.5462	0.54620171	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.488	16.488	2	2.0993E-08	8778	DP1145_11	143.73	105.65			146300000	501	441	470	818	1208;1209	1209		2	9606
EELEALFLPYDLK	Unmodified	1578.8181	0.81812604	689	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					22.767	22.767	2	1.6193E-07	18186	DP1145_11	152.7	88.593			2326800	502	689	471	819	1210;1211	1211		2	9606
EELGLIEQAYDNPHEALSR	Unmodified	2183.0495	0.049475973	537	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					19.133	19.133	3	0.0021393	12863	DP1145_11	114.52	54.847			0	503	537	472	820	1212	1212		1	9606
EENKSDMNTVLNYIFSHAQVTK	Oxidation (M)	2583.2275	0.22751669	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					20.313	20.313	3	3.7435E-05	14644	DP1145_11	132.76	51.252			29417000	504	441	473	821	1213	1213	315	1	9606
EENKSDMNTVLNYIFSHAQVTK	Unmodified	2567.2326	0.23260207	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					21.541	21.541	3;4	7.83E-20	16427	DP1145_11	169.77	106.33			14898000	505	441	473	822;823	1214;1215;1216	1215		3	9606
EEPGSDSGTTAVVALIR	Unmodified	1700.8581	0.85809337	49	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			1			19.469	19.469	2	0.012069	14637	DP1145_13	88.803	61.372			21190000	506	49	474	824	1217	1217		1	9606
EEPSNPFLAFVEK	Unmodified	1505.7402	0.74021007	553	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	2	0		1				21.98	21.98	2	0.0025581	19186	DP1145_12	97.734	61.416			3284100	507	553	475	825	1218;1219	1219		2	9606
EESQIPVDEVFFHR	Unmodified	1730.8264	0.82639932	417	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				19.445	19.445	3	0.0066044	15370	DP1145_12	77.279	54.844			0	508	417	476	826	1220	1220		1	9606
EFFEIMPNYAK	Unmodified	1387.6482	0.64822394	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.379	20.379	2	8.0396E-05	16189	DP1145_13	132.76	75.168			67091000	509	124	477	827	1221;1222	1221		2	9606
EFFNGKEPSR	Unmodified	1209.5778	0.57783619	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			15.038	15.038	3	0.01888	8024	DP1145_13	73.841	47.091			33934000	510	160	478	828	1223	1223		1	9606
EFHLNESGDPSSK	Unmodified	1445.6423	0.64228694	155	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				2		15.307	15.307	2;3	4.4906E-16	7760	DP1145_14	167.73	132.98			384350000	511	155	479	829;830	1224;1225;1226	1224		3	9606
EFRPEDQPWLLR	Unmodified	1584.8049	0.80487601	244	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3.5	0.5			1	1		19.38	19.38	3	0.0081736	14702	DP1145_13	80.245	33.259			72647000	512	244	480	831;832	1227;1228	1227		2	9606
EGAFSNFPISEETIK	Unmodified	1667.8043	0.80426689	721;660	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	3	0			1			19.78	19.78	2	0.0015432	15358	DP1145_13	125.36	84.195			63652000	513	721;660	481	833	1229	1229		1	9606
EGGAGGGFGSPMDIFDMFFGGGGR	2 Oxidation (M)	2353.9732	0.97321626	234	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	2	0	3	0			1			24.218	24.218	2	0.00014501	21619	DP1145_13	102.15	86.335			0	514	234	482	834	1230	1230	182;183	1	9606
EGLPLMVFANWR	Oxidation (M)	1447.7282	0.7282056	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.33	1.25	1	1		1		22.021	22.021	2	0.00013727	18072	DP1145_14	138.06	101.48			155230000	515	441	483	835;836;837	1231;1232;1233;1234;1235;1236	1234	316	6	9606
EGLPLMVFANWR	Unmodified	1431.7333	0.73329097	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		23.166	23.166	2	3.2424E-23	18763	DP1145_11	177.3	112.15			99569000	516	441	483	838;839;840;841	1237;1238;1239;1240;1241;1242;1243;1244	1239		8	9606
EGLSACQQSGFPAVLSSK	Unmodified	1864.8989	0.89891233	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				18.964	18.964	2	8.1679E-64	14624	DP1145_12	257.04	221.36			0	517	534	484	842	1245	1245		1	9606
EGMNIVEAMER	2 Oxidation (M)	1309.5642	0.56423631	383	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	2	0	1	0	1					15.063	15.063	2	0.018373	6344	DP1145_11	71.03	37.652			5178300	518	383	485	843	1246	1246	279;280	0	9606
EGPAVVGQFIQDVK	Unmodified	1485.7827	0.78274359	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				19.97	19.97	2	7.7785E-10	16151	DP1145_12	189.17	147.77			51053000	519	566	486	844	1247;1248	1247		2	9606
EGPVQFEEDPFGLDKFLEEAK	Unmodified	2423.1533	0.15327234	457	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	1	3	0			1			22.84	22.84	3	7.1664E-05	19740	DP1145_13	133.35	102.47			10723000	520	457	487	845	1249	1249		1	9606
EGSIEIDIPVPK	Unmodified	1295.6973	0.69728262	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.573	19.573	2	1.0745E-08	14871	DP1145_13	175.93	122.44			1109000000	521	647	488	846;847;848;849	1250;1251;1252;1253;1254;1255	1253		6	9606
EGSLSPASVGSDTLSDLGISSLQDGLALHIR	Unmodified	3094.5782	0.57823671	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.483	22.483	3	1.7352E-12	17797	DP1145_11	100.59	77.363			1422500	522	441	489	850	1256;1257	1256		2	9606
EGVLTGSPEQKEEAAK	Unmodified	1671.8315	0.83154427	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	1	0	1					14.369	14.369	3	2.6528E-14	5519	DP1145_11	168.67	118.39			14790000	523	605	490	851	1258	1258		0	9606
EHALLAYTLGVK	Unmodified	1313.7343	0.73433683	392	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	0				1		18.311	18.311	2	0.02398	12710	DP1145_14	85.807	58.504			14577000	524	392	491	852	1259	1259		1	9606
EHDPVGQMVNNPK	Unmodified	1463.6827	0.68271197	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				14.821	14.821	3	0.001313	8070	DP1145_12	108.98	75.224			0	525	322	492	853	1260	1260		1	9606
EHHFGSSGMTLHER	Unmodified	1623.7212	0.72122274	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		2				14.367	14.367	3;4	0.00039274	7445	DP1145_12	111.83	98.086			12366000	526	772	493	854;855	1261;1262	1261		1	9606
EIAEAYLGK	Unmodified	992.51786	0.51786169	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	4.5	0.5				1	1	16.825	16.825	2	0.016422	9693	DP1145_15	89.752	19.227			50955000	527	161	494	856;857	1263;1264	1264		1	9606
EIAEAYLGYPVTNAVITVPAYFNDSQR	Unmodified	3000.4869	0.4869025	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			22.84	22.84	3	3.4312E-08	19686	DP1145_13	112.61	75.935			14602000	528	156	495	858	1265;1266	1265		2	9606
EIAQDFKTDLR	Unmodified	1334.683	0.68302954	395	Q71DI3;Q16695;P84243;P68431	HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	1	5	0					1	16.606	16.606	3	0.038558	9373	DP1145_15	79.07	40.356			149830000	529	395	496	859	1267	1267		0	9606
EIEDLSFTEFIFCK	Unmodified	1776.828	0.8280388	792				yes	yes	0	0	0	2	0		1				19.077	19.077	2	0.0068749	14926	DP1145_12	87.149	6.4118	+		12024000	530	792	497	860	1268	1268		1	9606
EIEIDIEPTDKVER	Unmodified	1684.8519	0.85194536	502	Q15843	NEDD8	NEDD8	yes	yes	0	0	1	2	0		1				17.824	17.824	3	0.010087	12696	DP1145_12	73.881	46.2			7318400	531	502	498	861	1269	1269		1	9606
EIETYHNLLEGGQEDFESSGAGK	Unmodified	2509.1245	0.12449141	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0.816	1	1	1			18.935	18.935	3	0.00018842	12694	DP1145_11	103.71	79.114		+	470010000	532	20	499	862;863;864	1270;1271;1272;1273	1270		4	9606
EIFLSQPILLELEAPLK	Unmodified	1952.1234	0.12341618	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.33	1.25	1		2	2	1	23.793	23.793	2;3	8.036599999999999E-256	21002	DP1145_13	231.21	201.13			497100000	533	252;350;351	500	865;866;867;868;869;870	1274;1275;1276;1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289	1283		16	9606
EIFNFVLK	Unmodified	1008.5644	0.56441796	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.511	20.511	2	0.037339	14985	DP1145_11	84.244	17.25			10693000	534	400	501	871	1290	1290		1	9606
EIIDLVLDR	Unmodified	1084.6128	0.61282471	393;547;662	P68363;Q71U36;Q9BQE3	TUBA1B;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	2.6	1.02	1	1	2	1		20.767	20.767	1;2	9.2508E-37	17422	DP1145_12	188.98	90.454			2326800000	535	393;547;662	502	872;873;874;875;876	1291;1292;1293;1294;1295;1296;1297;1298	1294		8	9606
EIIDTANTTEMNSDHHSK	Oxidation (M)	2057.896	0.8960118	709	Q9HAW4	CLSPN	Claspin	yes	yes	0	1	0	2	0		1				13.867	13.867	3	0.026356	6755	DP1145_12	111.34	77.142			995900	536	709	503	877	1299	1299	510	0	9606
EIIHVLMDCCLQEK	Oxidation (M)	1802.8365	0.83651177	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2	0		1				17.776	17.776	3	0.0020309	12914	DP1145_12	90.759	63.816			17413000	537	520	504	878	1300	1300	397	1	9606
EIKDILIQYDR	Unmodified	1404.7613	0.76127986	356	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					1	18.592	18.592	2	0.037256	12464	DP1145_15	116.52	54.054			45965000	538	356	505	879	1301	1301		0	9606
EILALIPNQNALLK	Unmodified	1548.9239	0.92392852	551	Q7L2Z9	CENPQ	Centromere protein Q	yes	yes	0	0	0	4	0				1		20.761	20.761	2	0.0098093	16507	DP1145_14	77.662	46.232			12382000	539	551	506	880	1302	1302		1	9606
EIPSATQSPISK	Unmodified	1256.6612	0.66123147	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				15.722	15.722	2	0.00072177	9451	DP1145_12	125.71	76.177			10885000	540	663	507	881	1303;1304	1303		2	9606
EITALAPSTMK	Oxidation (M)	1176.606	0.60602477	335;389	P60709;P63267;P68133;P68032;P62736;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	2.5	1.5	1			1		15.799	15.799	2	0.024428	8492	DP1145_14	114.97	65.55			415400000	541	335;389	508	882;883	1305;1306	1306	250	1	9606
EIVHLQAGQCGNQIGAK	Unmodified	1821.9156	0.91556545	394;113	P04350;P68371	TUBB4A;TUBB4B	Tubulin beta-4A chain;Tubulin beta-4B chain	no	no	0	0	0	3.75	0.829			2	1	1	15.74	15.74	2;3	1.9342E-59	8692	DP1145_14	219.89	0			1637399999.9999998	542	113;394	509	884;885;886;887	1307;1308;1309;1310;1311	1310		4	9606
EIVTNFLAGFEA	Unmodified	1309.6554	0.65541781	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			24.225	24.225	2	0.00020218	21603	DP1145_13	110.41	78.088			14958000	543	217	510	888	1312;1313	1312		2	9606
EKAEALEDLVGFK	Unmodified	1447.7559	0.75586013	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				19.077	19.077	2	0.0072994	14839	DP1145_12	129.88	70.724			14726000	544	278	511	889	1314	1314		1	9606
EKEEEELMEKPQK	Unmodified	1645.7869	0.78690227	443	Q13123	IK	Protein Red	yes	yes	0	0	2	4	0				1		14.111	14.111	3	0.0079292	6059	DP1145_14	94.402	46.411			0	545	443	512	890	1315	1315		1	9606
EKLCYVALDFEQEMATAASSSSLEK	Unmodified	2806.3041	0.30411203	335;389	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	2	0		1				18.276	18.276	5	0.037704	13595	DP1145_12	35.628	13.958			244450000	546	335;389	513	891	1316	1316		1	9606
EKPQANVPSALPSLPAGSGLK	Unmodified	2060.1266	0.12660408	745	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	1	4	0				1		17.959	17.959	3	0.0066215	12136	DP1145_14	63.044	40.504			52645000	547	745	514	892	1317	1317		1	9606
EKPYFPIPEEYTFIQNVPLEDR	Unmodified	2723.3483	0.34828376	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	1.5	0.5	1	1				21.585	21.585	3	3.808E-20	18573	DP1145_12	170.37	115.54			29575000	548	409	515	893;894	1318;1319;1320;1321;1322	1322		5	9606
EKQPPIDNIIR	Unmodified	1321.7354	0.73539946	311	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	1	3	0			1			16.213	16.213	3	0.010935	9837	DP1145_13	79.23	38.506			61407000	549	311	516	895	1323	1323		1	9606
ELAEDGYSGVEVR	Unmodified	1422.6627	0.66268803	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	2.5	1.5	1			1		17.163	17.163	2	1.5168E-54	10771	DP1145_14	202.96	147.9			598140000	550	210	517	896;897	1324;1325	1325		2	9606
ELALALQEALEPAVR	Unmodified	1621.9039	0.90392136	523	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		21.445	21.445	2	3.4916E-15	17324	DP1145_14	167.71	123.75			12431000	551	523	518	898	1326;1327	1326		2	9606
ELAMQTFGVLK	Oxidation (M)	1251.6533	0.65330932	731	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	1	0	3	0			1			18.379	18.379	2	0.00042731	13088	DP1145_13	131.44	63.216			70881000	552	731	519	899	1328	1328	525	1	9606
ELAPAVSVLQLFCSSPK	Unmodified	1844.9706	0.97062071	743	Q9UBF2;Q9Y678	COPG2;COPG1	Coatomer subunit gamma-2;Coatomer subunit gamma-1	yes	no	0	0	0	2	0		1				23.002	23.002	2	0.0027597	20600	DP1145_12	132.06	83.061			1704900	553	743	520	900	1329;1330;1331	1330		3	9606
ELAQQVQQVAAEYCR	Unmodified	1791.8574	0.85738187	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			2			19.478	19.478	2;3	5.1187E-70	14713	DP1145_13	257.54	198.91			58508000	554	193	521	901;902	1332;1333;1334	1332		3	9606
ELEFYLR	Unmodified	968.49673	0.49673232	354	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	4	0				1		19.461	19.461	2	3.6937E-12	14364	DP1145_14	143.97	60.687			101120000	555	354	522	903	1335	1335		1	9606
ELEPGDGPIAVIVCPTR	Unmodified	1821.9295	0.92948418	569	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				20.324	20.324	2	0.0027574	16828	DP1145_12	139.89	82.537			2582100	556	569	523	904	1336	1336		1	9606
ELFQTPCTDNPTTDEK	Unmodified	1894.8255	0.82547262	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				17.719	17.719	2	3.1688000000000004E-255	12662	DP1145_12	283.35	235.16			132870000	557	278	524	905;906	1337;1338;1339	1338		3	9606
ELFQTPDHTEESTTDDKTTK	Unmodified	2322.0499	0.049929483	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				15.368	15.368	4	0.00019856	8840	DP1145_12	134.4	107.92			29021000	558	278	525	907	1340;1341	1340		2	9606
ELFQTPGHTEEAVAAGK	Unmodified	1783.8741	0.87407779	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.67	1.11	1	2	1	2		16.606	16.606	2;3	4.2456E-227	10271	DP1145_13	279.65	212.43			384730000	559	278	526	908;909;910;911;912;913	1342;1343;1344;1345;1346;1347;1348;1349;1350	1348		8	9606
ELFQTPGHTEELVAAGK	Unmodified	1825.921	0.92102798	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			17.728	17.728	3	0.007145	10751	DP1145_11	94.007	53.53			267740000	560	278	527	914;915;916	1351;1352;1353	1351		2	9606
ELFQTPGHTEESMTDDKITEVSCK	Oxidation (M)	2797.2422	0.24224006	278	P46013	MKI67	Antigen KI-67	yes	no	0	1	1	2	0		2				16.776	16.776	3;4	0.0028242	11338	DP1145_12	64.069	35.993			98080000	561	278	528	917;918	1354;1355	1355	211	2	9606
ELFQTPGPSEESMTDEK	Oxidation (M)	1939.8357	0.83570295	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				17.384	17.384	2	0.023456	12297	DP1145_12	97.86	72.666			27775000	562	278	529	919	1356	1356	212	1	9606
ELFQTPGTDKPTTDEK	Unmodified	1805.8683	0.86832371	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.028	16.028	3	0.00079946	9977	DP1145_12	116.58	49.25			138000000	563	278	530	920	1357;1358;1359;1360	1359		4	9606
ELFQTPICTDKPTTHEK	Unmodified	2043.9935	0.993541	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.707	1	2	1			16.121	16.121	3;4	0.00094276	10115	DP1145_12	108.66	82.662			165320000	564	278	531	921;922;923;924	1361;1362;1363;1364;1365;1366	1362		6	9606
ELFQTPVCTDKPTTHEK	Unmodified	2029.9779	0.97789093	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.33	0.471		2	1			15.632	15.632	3;4	0.0012897	8768	DP1145_13	122.12	97.706			95113000	565	278	532	925;926;927	1367;1368;1369	1369		2	9606
ELGPDGEEAEGPGAGDGPPR	Unmodified	1905.8341	0.83406347	197	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	4	0				1		16.429	16.429	2	7.7367E-40	9576	DP1145_14	237.21	204.88			0	566	197	533	928	1370	1370		1	9606
ELIEIISGAAALD	Unmodified	1313.7078	0.70784731	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		23.332	23.332	2	0.0013733	19906	DP1145_14	101.46	61.458			3184100	567	249	534	929	1371	1371		1	9606
ELIIGDR	Unmodified	814.45487	0.45486751	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			16.577	16.577	2	0.003392	10223	DP1145_13	111.28	22.544			198460000	568	217	535	930	1372	1372		1	9606
ELILFSNSDNER	Unmodified	1435.6943	0.69432251	163	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	yes	no	0	0	0	2	0		1				19.226	19.226	2	0.03945	15102	DP1145_12	77.64	35.639			2907300	569	163	536	931	1373	1373		1	9606
ELIPNIPFQMLLR	Unmodified	1582.8905	0.8905199	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	23.401	23.401	2	1.0844E-10	21095	DP1145_12	160.75	116.44			123440000	570	164	537	932;933;934;935;936	1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385	1378		12	9606
ELIPNIPFQMLLR	Oxidation (M)	1598.8854	0.88543452	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		22.537	22.537	2	0.0072232	19188	DP1145_13	119.68	67.191			199510000	571	164	537	937;938;939	1386;1387;1388	1387	139	2	9606
ELISNSSDALDK	Unmodified	1290.6303	0.63032527	138	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	0	0	0	3	0			1			16.394	16.394	2	0.0053882	9980	DP1145_13	93.442	31.242			23848000	572	138	538	940	1389	1389		1	9606
ELISNSSDALDKIR	Unmodified	1559.8155	0.81550028	138	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	3	0			1			17.378	17.378	3	0.027074	11457	DP1145_13	81.904	52.689			21881000	573	138	539	941	1390	1390		0	9606
ELLADQNLK	Unmodified	1042.5659	0.56587452	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.38	16.38	2	7.9521E-47	10609	DP1145_12	199.68	55.824			1982299999.9999998	574	480	540	942;943;944;945;946	1391;1392;1393;1394;1395;1396	1392		4	9606
ELLDLAMQNAWFR	Oxidation (M)	1621.7923	0.79226242	569	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	1	0	2	0		1				21.879	21.879	2	0.0021281	18959	DP1145_12	122.96	82.466			1865400	575	569	541	947	1397;1398;1399	1397	428	3	9606
ELLDLAMQNAWFR	Unmodified	1605.7973	0.79734779	569	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	3	0			1			22.933	22.933	2	0.029031	19877	DP1145_13	70.908	52.236			4226400	576	569	541	948	1400	1400		1	9606
ELLFDAIGR	Unmodified	1032.5604	0.56039521	645	Q96QD5	DEPDC7	DEP domain-containing protein 7	yes	yes	0	0	0	3	0			1			20.261	20.261	2	0.0063584	15917	DP1145_13	107.29	32.105			0	577	645	542	949	1401	1401		1	9606
ELLITDLLPDNR	Unmodified	1410.7718	0.77184455	417	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				21.998	21.998	2	4.6753E-11	19106	DP1145_12	157.99	106.93			5324100	578	417	543	950	1402;1403;1404;1405	1405		4	9606
ELLPLIYHHLLR	Unmodified	1515.8926	0.89256881	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				19.777	19.777	3	1.437E-06	15911	DP1145_12	140.49	115.47			38623000	579	451	544	951	1406;1407	1406		2	9606
ELLQEDTPSTK	Unmodified	1259.6245	0.62451161	521	Q5JRC9	FAM47A	Protein FAM47A	yes	yes	0	0	0	5	0					1	17.592	17.592	2	0.0030349	11256	DP1145_15	101.46	13.09			420580000	580	521	545	952	1408;1409	1409		2	9606
ELNEALELK	Unmodified	1057.5655	0.56554017	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	4	0				1		17.459	17.459	2	0.0030088	11326	DP1145_14	105.1	33.806			59444000	581	116	546	953	1410	1410		1	9606
ELNEALELKDAQAGKEPGGSR	Unmodified	2211.1131	0.11313886	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	2	3.5	0.5			1	1		16.064	16.064	3	6.0181E-63	9448	DP1145_13	208.37	153.6			114740000	582	116	547	954;955	1411;1412	1411		2	9606
ELPRPVLEGQQSER	Unmodified	1636.8533	0.85328277	673	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	1	2	0		1				15.871	15.871	3	0.0086702	9707	DP1145_12	97.631	53.833			45300000	583	673	548	956	1413	1413		0	9606
ELPTVTTNVQNSQDK	Unmodified	1672.8268	0.82679325	617	Q96B01	RAD51AP1	RAD51-associated protein 1	yes	yes	0	0	0	4	0				1		16.295	16.295	2	6.1138E-06	9295	DP1145_14	145.23	101.93			13536000	584	617	549	957	1414	1414		1	9606
ELYDKGGEQAIK	Unmodified	1349.6827	0.68269519	234	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	1	4	0				1		14.699	14.699	2	0.0041719	6889	DP1145_14	114.89	41.966			0	585	234	550	958	1415	1415		1	9606
EMEQFVKK	Oxidation (M)	1053.5165	0.51648149	747	Q9UGI8	TES	Testin	yes	yes	0	1	1	1	0	1					17.361	17.361	2	0.035295	10298	DP1145_11	85.359	26.578			6544900	586	747	551	959	1416	1416	533	1	9606
EMGKWIHLELR	Unmodified	1410.7442	0.74419001	103	O95626	ANP32D	Acidic leucine-rich nuclear phosphoprotein 32 family member D	yes	yes	0	0	1	1	0	1					16.297	16.297	3	0.0093783	8355	DP1145_11	64.73	19.132			20052000	587	103	552	960	1417	1417		1	9606
EMIGWIALGQNSSGEEEQDHWEEMK	2 Oxidation (M)	2964.2542	0.25420173	508	Q17RD7	SYT16	Synaptotagmin-16	yes	yes	0	2	0	4	0				1		20.346	20.346	3	0.03804	15596	DP1145_14	46.953	29.805			0	588	508	553	961	1418	1418	387;388	1	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	2 Oxidation (M)	2851.2753	0.27527152	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	0	3	0.707		1	2	1		16.765	16.765	3;4	3.8108E-23	10618	DP1145_13	160.98	136.88			520710000	589	480	554	962;963;964;965	1419;1420;1421;1422;1423;1424	1421	363;364	5	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	Oxidation (M)	2835.2804	0.2803569	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3	0.707		1	2	1		17.413	17.413	2;3	1.0420000000000001E-63	11724	DP1145_13	197.69	182.88			439500000	590	480	554	966;967;968;969	1425;1426;1427;1428;1429;1430;1431;1432	1428	363;364	8	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	Unmodified	2819.2854	0.28544228	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				18.085	18.085	3	2.6143E-50	13323	DP1145_12	185.16	163.59			30633000	591	480	554	970	1433;1434;1435;1436;1437	1433		5	9606
EMQSVVQLIMTR	2 Oxidation (M)	1465.7269	0.72688497	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	2	0	2	0		1				18.769	18.769	2	0.0012363	14385	DP1145_12	99.539	60.785			11896000	592	698	555	971	1438	1438	504;505	1	9606
EMQSVVQLIMTR	Unmodified	1433.7371	0.73705572	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				21.458	21.458	2	0.00045356	18449	DP1145_12	115.57	42.646			4333000	593	698	555	972	1439;1440	1440		2	9606
ENAPAIIFIDEIDAIATK	Unmodified	1943.0252	0.025158703	276	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	3	0			1			24.695	24.695	2	3.9693E-46	22281	DP1145_13	199.33	162.69			4884600	594	276	556	973	1441;1442	1441		2	9606
ENFSCLTR	Unmodified	1025.46	0.46002924	261	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	1	0	1					16.391	16.391	2	0.022724	8526	DP1145_11	95.815	46.397			22203000	595	261	557	974	1443	1443		1	9606
ENGMDVFR	Unmodified	966.42292	0.42291545	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				17.476	17.476	2	0.035042	12429	DP1145_12	85.212	43.71			29459000	596	164	558	975	1444;1445	1444		2	9606
ENIVEAIIHSPELIR	Unmodified	1731.9519	0.95193418	101	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		2				21.923	21.923	2;3	1.3666E-09	19093	DP1145_12	179.59	77.942			5164200	597	101	559	976;977	1446;1447;1448;1449	1448		4	9606
ENLTELSGGQR	Unmodified	1202.5891	0.58912916	99	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	2	0		1				16.107	16.107	2	0.00014617	10088	DP1145_12	114.51	51.931			9865500	598	99	560	978	1450;1451	1450		2	9606
ENNVDAVHPGYGFLSER	Unmodified	1902.886	0.88603946	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				18.118	18.118	3	0.0061733	13224	DP1145_12	87.429	58.472			806870000	599	164	561	979;980	1452;1453	1453		2	9606
EPLVATNLPGR	Unmodified	1165.6455	0.64552182	267	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			17.178	17.178	2	0.0047277	11174	DP1145_13	134.26	44.964			60338000	600	267	562	981	1454	1454		0	9606
EPPGLIFNKVEVSEDEPASK	Unmodified	2184.095	0.095029182	87	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	1	4	0				1		18.36	18.36	3	0.00043005	12577	DP1145_14	123.63	107.34			56144000	601	87	563	982	1455	1455		1	9606
EQEMLHK	Oxidation (M)	929.42767	0.42766648	776	Q9Y2Y4	ZBTB32	Zinc finger and BTB domain-containing protein 32	yes	yes	0	1	0	3	0			1			18.779	18.779	1	0.043279	13594	DP1145_13	40.686	15.128			28857000	602	776	564	983	1456	1456	545	0	9606
EQEPMPTVDSHEPR	Oxidation (M)	1666.7257	0.72569899	706	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	1	0	4.5	0.5				1	1	14.06	14.06	3	0.00038286	5543	DP1145_15	120.9	87.578			22455000	603	706	565	984;985	1457;1458;1459;1460	1459	508	4	9606
EQEREGDPMANFIKK	Oxidation (M)	1806.857	0.85704752	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	1	2	3	0			1			14.339	14.339	3	0.008899	6750	DP1145_13	102.5	56.513			41360000	604	665	566	986	1461	1461	492	0	9606
EQGVLSFWR	Unmodified	1120.5665	0.56654322	122;168	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	2.5	1.5	1			1		20.432	20.432	2	1.7479999999999998E-28	15841	DP1145_14	176.09	77.669			155670000	605	122;168	567	987;988	1462;1463;1464	1464		3	9606
EQIVPKPEEEVAQK	Unmodified	1622.8516	0.85155143	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	4.67	0.471				1	2	15.258	15.258	2;3	3.6775E-42	7258	DP1145_15	199.82	115.65			261770000	606	198	568	989;990;991	1465;1466;1467;1468;1469;1470;1471	1470		7	9606
EQIVPKPEEEVAQKK	Unmodified	1750.9465	0.94651445	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	2	4.67	0.471				1	2	14.506	14.506	3;4	0.019024	6157	DP1145_15	134.04	88.836			83842000	607	198	569	992;993;994	1472;1473;1474;1475	1474		2	9606
EQMIDLQNLLTTQSPSVK	Unmodified	2044.0511	0.051055878	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				21.428	21.428	2	0.0045413	18401	DP1145_12	99.566	60.986			2302900	608	673	570	995	1476	1476		1	9606
EQQELKEQDQETMAFEAEFQYAETVFR	Oxidation (M)	3339.4878	0.48776672	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	1	1	3	0			2			22.826	22.826	3	1.3229E-17	19563	DP1145_13	152.88	136.86			10089000	609	665	571	996;997	1477;1478;1479;1480	1478	493	4	9606
EQQIVIQSSGGLSKDDIENMVK	Oxidation (M)	2433.2057	0.20571862	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			17.578	17.578	3	0.0031967	11987	DP1145_13	86.258	62.054			55395000	610	255	572	998	1481	1481	192	1	9606
EQVEVVEFHSNK	Unmodified	1443.6994	0.69940789	585	Q8NDD1	C1orf131	Uncharacterized protein C1orf131	yes	yes	0	0	0	4	0				2		15.704	15.704	2;3	5.2176E-43	8369	DP1145_14	232.88	121.43			19287000	611	585	573	999;1000	1482;1483	1482		2	9606
EREEFLIPIYHQVAVQFADLHDTPGR	Unmodified	3079.5516	0.55156844	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	3	0			1			21.078	21.078	4	0.0072983	17269	DP1145_13	49.871	22.118			23874000	612	441	574	1001	1484	1484		1	9606
ESADGLQGETQLLVSR	Unmodified	1701.8533	0.85334235	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			18.878	18.878	2	0.0014772	14657	DP1145_12	136.3	81.812			92950000	613	278	575	1002;1003	1485;1486;1487	1486		3	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	Oxidation (M)	3342.5166	0.51664078	464	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	1	0	3	0			1			19.741	19.741	3	0.0017912	15301	DP1145_13	49.707	36.401			47770000	614	464	576	1004	1488	1488	355	1	9606
ESFADVLPEAAALVK	Unmodified	1558.8243	0.82427405	530	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		1				22.083	22.083	2	0.00098075	19290	DP1145_12	116.55	68.652			2720400	615	530	577	1005	1489;1490	1490		2	9606
ESFMESLNRLKEIHEK	Acetyl (Protein N-term);Oxidation (M)	2047.0044	0.004440036	583	Q8NC74	RBBP8NL	RBBP8 N-terminal-like protein	yes	yes	1	1	2	5	0					1	20.707	20.707	2	0.032243	15427	DP1145_15	59.418	18.802			0	616	583	578	1006	1491	1491	435	1	9606
ESGASHLSFPK	Unmodified	1158.5669	0.56693715	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3.5	0.5			1	1		15.034	15.034	2	0.026942	8380	DP1145_13	87.149	26.467			33597000	617	665	579	1007;1008	1492;1493	1492		2	9606
ESKEEETSIDVAGKPNEVTK	Unmodified	2189.0699	0.069936644	318	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	2	1	0	1					14.762	14.762	3	4.2782E-177	6061	DP1145_11	261.19	221.28			12336000	618	318	580	1009	1494	1494		0	9606
ESLCDSPHQNLSR	Unmodified	1541.6893	0.68925391	47	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	3	0			1			14.487	14.487	3	0.026289	6951	DP1145_13	80.96	23.786			4989900	619	47	581	1010	1495	1495		0	9606
ESLCQAALGLILK	Unmodified	1414.7854	0.78538612	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	22.753	22.753	2	0.00018644	19108	DP1145_14	131.12	79.588			732850000	620	647	582	1011;1012;1013;1014;1015	1496;1497;1498;1499;1500;1501;1502;1503;1504;1505	1503		9	9606
ESPELLELIEDLK	Unmodified	1526.808	0.80795528	720	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3	0			1			23.454	23.454	2	2.8689E-16	20603	DP1145_13	172.56	130.32			12976000	621	720	583	1016	1506	1506		1	9606
ESPFSTSASPLLSGSQHFDVPPR	Unmodified	2442.1816	0.18155278	46	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				19.377	19.377	3	0.0032806	15246	DP1145_12	69.922	47.701			5925300	622	46	584	1017	1507	1507		1	9606
ESPHEPDPEPYEPIPPK	Unmodified	1956.9105	0.91052288	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2.5	0.5		1	1			16.415	16.415	2;3	6.439100000000001E-33	10604	DP1145_12	188.59	144.34			92383000	623	644	585	1018;1019	1508;1509;1510	1508		3	9606
ESTLHLVLR	Unmodified	1066.6135	0.61349341	384	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1.5	0.5	1	1				16.871	16.871	2	5.9216E-29	9371	DP1145_11	180.93	127.99			364100000	624	384	586	1020;1021	1511;1512;1513	1511		3	9606
ESVFTVEGGHR	Unmodified	1216.5836	0.58364985	655	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		15.5	15.5	3	0.01612	8062	DP1145_14	107.45	82.601			172690000	625	655	587	1022	1514	1514		0	9606
ESYSIYVYK	Unmodified	1150.5546	0.55464113	135	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	5	0					1	17.892	17.892	2	0.013676	11423	DP1145_15	93.195	47.86			298700000	626	135	588	1023	1515;1516	1515		2	9606
ESYSVYVYK	Unmodified	1136.539	0.53899107	73	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	0	5	0					1	17.303	17.303	2	0.0011589	10351	DP1145_15	113.41	65.754			243040000	627	73	589	1024	1517;1518	1517		2	9606
ETAAVIFLHGLGDTGHSWADALSTIR	Unmodified	2737.3824	0.38237785	100	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	5	0					2	22.391	22.391	3	4.995099999999999E-22	17769	DP1145_15	207.86	173.04			53780000	628	100	590	1025;1026	1519;1520	1520		2	9606
ETANAIVSQQTPQR	Unmodified	1541.7798	0.77978347	264	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		15.306	15.306	2	0.00085167	7734	DP1145_14	108.98	40.137			16431000	629	264	591	1027	1521	1521		1	9606
ETDPVKSPPLPEHQK	Unmodified	1700.8733	0.87334951	631	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	1	2	0		1				14.367	14.367	3	0.016897	7521	DP1145_12	54.393	34.866			2344200	630	631	592	1028	1522	1522		1	9606
ETENDDLTNVIQK	Unmodified	1517.7209	0.72093119	101	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				17.37	17.37	2	1.113E-15	12073	DP1145_12	166.66	127.04			13917000	631	101	593	1029	1523	1523		1	9606
ETGGFSQEELLK	Unmodified	1336.6511	0.65106071	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	4	1			1		1	17.935	17.935	2	1.528E-09	11346	DP1145_15	152.04	116.89			845870000	632	480	594	1030;1031	1524;1525	1525		1	9606
ETGYVVERPSTTK	Unmodified	1465.7413	0.7412727	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		1				14.367	14.367	3	0.00087212	7526	DP1145_12	173.04	114.52			17155000	633	735	595	1032	1526;1527	1526		2	9606
ETIELSPTGRPK	Unmodified	1326.7143	0.71432967	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				15.168	15.168	2	2.0952000000000003E-31	8625	DP1145_12	198.72	149.92			19287000	634	724	596	1033	1528	1528		1	9606
ETPLPIDPSMFPTWPAK	Oxidation (M)	1941.9546	0.9546363	201	Q9UQ88;P21127	CDK11A;CDK11B	Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B	yes	no	0	1	0	2	0		1				21.654	21.654	2	0.014545	18697	DP1145_12	131.79	69.496			2755400	635	201	597	1034	1529	1529	166	1	9606
ETVPTLAPK	Unmodified	954.5386	0.53859714	598	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	4	0				1		15.805	15.805	2	0.029732	8669	DP1145_14	79.713	59.088			126780000	636	598	598	1035	1530	1530		1	9606
EVAAFAQFGSDLDAATQQLLSR	Unmodified	2337.1601	0.16008906	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			23.95	23.95	2;3	5.6714E-97	21271	DP1145_13	283.1	214.66			17886000	637	217	599	1036;1037	1531;1532;1533	1531		3	9606
EVAFFNNFLTDAK	Unmodified	1514.7405	0.74054442	678	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	2	0		1				21.757	21.757	2	0.001005	18872	DP1145_12	126.71	74.218			1507800	638	678	600	1038	1534	1534		1	9606
EVAGHTEQLQMSR	Unmodified	1484.7042	0.70417569	15	CON__P08727;P08727	KRT19	Keratin, type I cytoskeletal 19	yes	no	0	0	0	4	0				1		14.587	14.587	3	0.0065442	6694	DP1145_14	66.708	41.693		+	11581000	639	15	601	1039	1535	1535		1	9606
EVATNSELVQSGK	Unmodified	1360.6834	0.68342347	5	P02533;CON__P02533;CON__Q9QWL7;CON__Q04695;Q04695	KRT14;KRT17	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17	yes	no	0	0	0	1	0	1					14.962	14.962	2	0.015304	6475	DP1145_11	77.64	43.68		+	41207000	640	5	602	1040	1536	1536		1	9606
EVDDLGPEVGDIK	Unmodified	1384.6722	0.67219008	51	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	0	1					18.26	18.26	2	0.030869	11522	DP1145_11	67.93	6.2515			7340800	641	51	603	1041	1537	1537		1	9606
EVDEQMLAIQSK	Oxidation (M)	1405.6759	0.67589525	454;669	Q13509;Q9BUF5	TUBB3;TUBB6	Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	1	0	1.5	0.5	1	1				16.158	16.158	2	1.3393E-10	8115	DP1145_11	160.77	102.54			37099000	642	454;669	604	1042;1043	1538;1539;1540	1539	348	3	9606
EVDEQMLNVQNK	Oxidation (M)	1461.677	0.67695789	394;137;464	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3	1.41	1	1	1	1	1	15.333	15.333	2	2.5116E-165	7806	DP1145_14	256.47	190.28			1830699999.9999998	643	137;394;464	605	1044;1045;1046;1047;1048	1541;1542;1543;1544;1545;1546;1547;1548;1549	1545	106	9	9606
EVDEQMLNVQNK	Unmodified	1445.682	0.68204326	394;137;464	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	4	0.816			1	1	1	16.843	16.843	2	7.0359E-55	9683	DP1145_15	204.79	143.1			1182300000	644	137;394;464	605	1049;1050;1051	1550;1551;1552;1553	1552		4	9606
EVDEQMLSVQSK	Unmodified	1391.6602	0.66024519	113	P04350	TUBB4A	Tubulin beta-4A chain	yes	yes	0	0	0	3	0			1			16.945	16.945	2	0.0059943	10871	DP1145_13	109.66	69.815			0	645	113	606	1052	1554	1554		1	9606
EVFFMNTQSIVQLVQR	Oxidation (M)	1953.9982	0.99823245	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.5	0.5	2	2				21.412	21.412	2;3	2.0827E-105	16188	DP1145_11	233.13	179.9			254230000	646	441	607	1053;1054;1055;1056	1555;1556;1557;1558;1559;1560;1561;1562	1557	317	8	9606
EVFFMNTQSIVQLVQR	Unmodified	1938.0033	0.003317824	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.605	22.605	2	7.309800000000001E-198	17954	DP1145_11	263.07	215.22			3222700	647	441	607	1057	1563;1564	1563		2	9606
EVFGTFGIPFLLR	Unmodified	1494.8235	0.82348619	615	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	3.5	0.5			1	1		23.861	23.861	2	0.0010266	21156	DP1145_13	116.3	70.706			4856600	648	615	608	1058;1059	1565;1566	1565		2	9606
EVIELPLTNPELFQR	Unmodified	1796.9672	0.96724989	365	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	4	0				1		21.809	21.809	2	3.1712000000000002E-55	17709	DP1145_14	204.17	122			18693000	649	365	609	1060	1567;1568	1567		2	9606
EVLCPESQSPNGVR	Unmodified	1570.741	0.74095513	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			15.757	15.757	2	1.0222E-194	9000	DP1145_13	270.63	211.48			562250000	650	480	610	1061;1062	1569;1570;1571;1572	1571		4	9606
EVPAVPETLKK	Unmodified	1209.6969	0.69688869	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.4	15.4	3	0.0060388	7982	DP1145_14	91.469	65.353			124090000	651	195	611	1063	1573	1573		1	9606
EVQLAQIFEPLSR	Unmodified	1528.8249	0.82494275	510	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				21.742	21.742	2	1.3511E-31	18821	DP1145_12	185.99	113.9			5278100	652	510	612	1064	1574;1575;1576	1575		3	9606
EVQTNDLKEVVNK	Unmodified	1514.794	0.79403655	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				2		15.6	15.6	2;3	1.1208000000000001E-190	8200	DP1145_14	307.97	241.05			34730000	653	339	613	1065;1066	1577;1578;1579	1577		3	9606
EVSFQSTGESEWK	Unmodified	1512.6733	0.67325272	422	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		17.808	17.808	2	0.00050499	11889	DP1145_14	132.03	83.427			51854000	654	422	614	1067	1580	1580		1	9606
EWLIEVPGNADPLEDQFAK	Unmodified	2170.0582	0.058249746	489	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		22.401	22.401	2	6.4409E-17	18630	DP1145_14	170.95	127.45			3359100	655	489	615	1068	1581;1582;1583	1582		3	9606
EYEATLEECCAK	Unmodified	1501.6065	0.60649506	12	CON__P02769			yes	yes	0	0	0	3	0			1			16.099	16.099	2	3.1294E-08	9523	DP1145_13	154.01	133.87		+	115060000	656	12	616	1069	1584;1585	1584		2	9606
EYEIPSNLTPADVFFR	Unmodified	1896.9258	0.92577901	597	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	1	0	1					22.354	22.354	2	0.0020478	17612	DP1145_11	133.32	103.51			2234900	657	597	617	1070	1586	1586		1	9606
EYNEFAEVFLK	Unmodified	1387.666	0.66598249	101	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				21.291	21.291	2	0.0076122	18117	DP1145_12	94.297	64.63			15434000	658	101	618	1071	1587	1587		1	9606
FAAGHDAEGSHSHVHFDEK	Unmodified	2076.9038	0.90381479	685	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	4.5	0.5				2	2	13.859	13.859	4;5	0.0011599	5244	DP1145_15	121.03	97.659			63902000	659	685	619	1072;1073;1074;1075	1588;1589;1590;1591;1592	1590		4	9606
FACHSASLTVR	Unmodified	1247.6081	0.60809046	493	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	4	0				1		14.787	14.787	3	1.1855E-13	7038	DP1145_14	166.69	101.19			33875000	660	493	620	1076	1593	1593		0	9606
FADLSEAANR	Unmodified	1092.52	0.51998696	145	P08670	VIM	Vimentin	yes	yes	0	0	0	3.5	0.5			1	1		16.394	16.394	2	4.7242E-06	9450	DP1145_14	130.56	63.392			128220000	661	145	621	1077;1078	1594;1595	1595		2	9606
FAEDEEKSENSSEDGDITDK	Unmodified	2243.919	0.91897489	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2.5	0.5		1	1			15.053	15.053	3	4.3519E-132	7811	DP1145_13	239.18	206.01			73410000	662	520	622	1079;1080	1596;1597;1598	1598		3	9606
FAFQAEVNR	Unmodified	1080.5352	0.53524309	177	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	0		1				17.492	17.492	2	0.00012472	12300	DP1145_12	116.73	59.166			0	663	177	623	1081	1599	1599		1	9606
FAGSAGWEGTESLKKPEDK	Unmodified	2035.9851	0.9850848	443	Q13123	IK	Protein Red	yes	yes	0	0	2	3	0			1			16.084	16.084	3	0.0097207	9525	DP1145_13	138.98	111.34			53738000	664	443	624	1082	1600	1600		1	9606
FANPFPAAVR	Unmodified	1088.5767	0.57671398	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	18.623	18.623	2	8.0857E-06	13116	DP1145_14	125.25	83.376			1376500000	665	124	625	1083;1084;1085;1086	1601;1602;1603;1604;1605	1604		5	9606
FASFIDK	Unmodified	826.4225	0.42250475	21;14;6;25;23	P35908;CON__P35908v2;CON__P35908;O95678;CON__Q9R0H5;CON__Q7Z794;CON__Q6IFZ6;CON__O95678;CON__Q5XKE5;CON__Q6NXH9;CON__Q8VED5;Q5XKE5;Q7Z794;CON__Q9H552;CON__P07744;CON__P08729;P19013;CON__Q3KNV1;Q9NSB2;P08729;CON__P19013;CON__Q6ISB0;CON__Q9NSB2;CON__Q01546;Q01546;CON__Q9DCV7;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5;CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q14CN4;Q3SY84;Q7RTS7;Q86Y46;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;P04259;CON__P13647;P13647;CON__P12035;P12035;CON__P05787;P05787	KRT2;KRT75;KRT79;KRT77;KRT4;KRT84;KRT7;KRT76;KRT72;KRT71;KRT74;KRT73;KRT6C;KRT6A;KRT6B;KRT5;KRT3;KRT8	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 4;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 8	no	no	0	0	0	2.67	1.25	1		1	1		17.366	17.366	2	5.7444E-05	11018	DP1145_14	128.86	48.306		+	454550000	666	21;25;23;6;14	626	1087;1088;1089	1606;1607;1608	1608		3	9606
FASWALESDNNTALLLSK	Unmodified	1979	6.5851004E-06	449	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	3	0			1			21.151	21.151	2	0.035153	17189	DP1145_13	83.53	38.683			0	667	449	627	1090	1609	1609		1	9606
FAYTGTEMRTVAEK	Unmodified	1602.7712	0.77119262	281	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	yes	yes	0	0	1	4	0				1		16.154	16.154	2	0.0046379	9093	DP1145_14	131.52	29.852			97854000	668	281	628	1091	1610	1610		1	9606
FCTGLTQIETLFK	Unmodified	1556.7909	0.79086543	170	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0				1		22.099	22.099	2	0.0015995	18214	DP1145_14	119.53	78.535			9374100	669	170	629	1092	1611	1611		1	9606
FDGALNVDLTEFQTNLVPYPR	Unmodified	2408.2012	0.20122559	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			22.92	22.92	2	1.1483999999999998E-19	19802	DP1145_13	205.3	147.2			35062000	670	393;547;662	630	1093	1612;1613	1612		2	9606
FDLLASNFPPLPGSSSR	Unmodified	1803.9155	0.91554867	546	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	2	0		1				21.749	21.749	2	0.010266	18883	DP1145_12	90.926	45.493			2070400	671	546	631	1094	1614;1615	1614		2	9606
FDLLWLIQDRPDRDNDLR	Unmodified	2299.1709	0.17092851	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	2	3	0			1			21.83	21.83	3	0.026187	18145	DP1145_13	79.471	33.767			0	672	240	632	1095	1616	1616		1	9606
FDLMYAK	Oxidation (M)	902.42079	0.42079019	393;547;662	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	1	0	4	1			1		1	17.241	17.241	2	0.013118	11350	DP1145_13	118.69	66.387			658160000	673	393;547;662	633	1096;1097	1617;1618	1617	292	1	9606
FDQLFDDESDPFEVLK	Unmodified	1942.8836	0.88363942	582	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	3.5	0.5			1	1		22.757	22.757	2	0.014399	19125	DP1145_14	95.273	44.92			34823000	674	582	634	1098;1099	1619;1620	1620		2	9606
FDTPFLPK	Unmodified	963.50657	0.50656873	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		19.377	19.377	2	1.0151E-17	14691	DP1145_13	172.03	74.558			18049000	675	480	635	1100;1101;1102	1621;1622;1623;1624	1623		4	9606
FDVQLKDLEK	Unmodified	1233.6605	0.66050319	355	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	5	0					2	17.868	17.868	2;3	7.022700000000001E-27	11222	DP1145_15	175.65	23.819			105830000	676	355	636	1103;1104	1625;1626	1626		2	9606
FEDENFILK	Unmodified	1153.5655	0.56554017	383	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	2	0		1				19.077	19.077	2	8.143400000000001E-86	14752	DP1145_12	219.56	82.429			14849000	677	383	637	1105	1627	1627		1	9606
FEEEGNPYYSSAR	Unmodified	1547.6529	0.65285163	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.677	16.677	2	1.5223E-166	10510	DP1145_13	256.48	188.26			505130000	678	710	638	1106	1628;1629	1628		2	9606
FEEPDSASVK	Unmodified	1107.5084	0.50841922	581	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2	0		1				15.268	15.268	2	0.014717	8669	DP1145_12	123.35	9.6484			9269100	679	581	639	1107	1630	1630		0	9606
FELSGIPPAPR	Unmodified	1182.6397	0.63970816	156;187	P0DMV9;P0DMV8;P17066	HSPA1B;HSPA1A;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6	no	no	0	0	0	3	0			1			18.579	18.579	2	1.9981E-07	13519	DP1145_13	143.37	42.121			72291000	680	156;187	640	1108	1631;1632	1631		2	9606
FELTGIPPAPR	Unmodified	1196.6554	0.65535823	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			18.679	18.679	2	0.006551	13737	DP1145_13	95.502	59.055			785410000	681	161	641	1109	1633	1633		1	9606
FENAFLSHVVSQHQALLGTIR	Unmodified	2366.2495	0.24951318	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.081	20.081	3	0.0012252	15799	DP1145_13	97.57	68.92			340000000	682	217	642	1110	1634;1635	1634		2	9606
FEPYANPTKR	Unmodified	1221.6142	0.6142217	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3	0			1			14.738	14.738	3	0.041695	7320	DP1145_13	82.831	37.67			28801000	683	310	643	1111	1636	1636		0	9606
FESPEVAER	Unmodified	1062.4982	0.49818889	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			15.541	15.541	2	7.5334E-13	8672	DP1145_13	148.99	88.227			79263000	684	310	644	1112	1637	1637		1	9606
FFVAPFPEVFGK	Unmodified	1383.7227	0.72270951	7	CON__P02662			yes	yes	0	0	0	3	1.58	1	1		1	1	22.382	22.382	2	9.8719E-07	18568	DP1145_14	145.9	116.13		+	369200000	685	7	645	1113;1114;1115;1116	1638;1639;1640;1641;1642;1643;1644;1645	1643		8	
FGAYIVDGLR	Unmodified	1109.5869	0.58694431	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2	1	1		1			19.38	19.38	2	3.8596E-08	14565	DP1145_13	139.97	90.548			46366000	686	441;43	646	1117;1118	1646;1647;1648	1647		3	9606
FGDPVVQSDMK	Unmodified	1221.57	0.56997362	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			16.777	16.777	2	0.035608	10687	DP1145_13	117.71	97.675			86123000	687	156	647	1119	1649	1649		0	9606
FGEVVDCTLK	Unmodified	1166.5642	0.56415996	467	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		17.484	17.484	2	0.0028657	11272	DP1145_14	113.71	0			0	688	467	648	1120	1650	1650		1	9606
FGFPEGSVELYAEK	Unmodified	1571.7508	0.75077476	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	2.5	1.5	1			1		20.076	20.076	2	0.00019261	15355	DP1145_14	142.08	104.09			58653000	689	210	649	1121;1122	1651;1652	1652		2	9606
FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK	Unmodified	4091.0653	0.065347814	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			1			21.971	21.971	3	1.1922E-08	18391	DP1145_13	61.082	43.743		+	18942000	690	21	650	1123	1653	1653		1	9606
FGIEIIK	Unmodified	818.49019	0.49019038	571	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	2	0		1				18.676	18.676	2	0.038505	14407	DP1145_12	85.359	12.321			4411400	691	571	651	1124	1654	1654		1	9606
FGTGGAAVPEK	Unmodified	1032.524	0.52400971	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				14.867	14.867	2	6.1547E-18	8176	DP1145_12	167.12	83.37			62981000	692	472	652	1125	1655;1656	1655		2	9606
FHFIDIYLDELSK	Unmodified	1638.8294	0.82935943	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		2				22.008	22.008	2;3	1.0647E-31	19185	DP1145_12	187.31	144.75			17744000	693	480	653	1126;1127	1657;1658;1659;1660	1659		4	9606
FIDPFCK	Unmodified	925.43677	0.4367746	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	0.471		2	1			19.078	19.078	1;2	0.0051541	14714	DP1145_12	106.42	43.268			664240000	694	480	654	1128;1129;1130	1661;1662;1663	1661		3	9606
FIDVGGYK	Unmodified	897.45962	0.45961853	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	3	1		1		1		17.266	17.266	2	0.00022299	11888	DP1145_12	124.34	34.974			171910000	695	644	655	1131;1132	1664;1665;1666	1664		3	9606
FIEGISEK	Unmodified	921.48075	0.48074791	689	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					16.163	16.163	2	0.0064529	8146	DP1145_11	104.75	1.9732			22259000	696	689	656	1133	1667	1667		1	9606
FIEIAAR	Unmodified	818.46504	0.46503826	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	0	1					16.767	16.767	2	0.019001	9029	DP1145_11	97.596	17.657			63631000	697	409	657	1134	1668	1668		1	9606
FIGPSPEVVR	Unmodified	1099.6026	0.60259438	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		17.168	17.168	2	5.4463E-06	9772	DP1145_11	129.42	65.887			1063899999.9999999	698	164	658	1135;1136;1137;1138	1669;1670;1671;1672;1673;1674	1669		6	9606
FIGPSPEVVRK	Unmodified	1227.6976	0.69755739	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.33	1.25	1	1		1		15.59	15.59	3	1.133E-10	7266	DP1145_11	150.15	79.753			101310000	699	164	659	1139;1140;1141	1675;1676;1677;1678;1679;1680;1681	1676		6	9606
FIIGSVSEDNSEDEISNLVK	Unmodified	2194.0641	0.064122984	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				21.013	21.013	2	0.00049749	17859	DP1145_12	170.74	139.15			146260000	700	441	660	1142;1143	1682;1683	1683		2	9606
FIPDDITFDDEPK	Unmodified	1550.7141	0.7140549	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				19.721	19.721	2	0.01821	15700	DP1145_12	75.566	40.414			4394800	701	698	661	1144	1684	1684		1	9606
FKDLGEEHFK	Unmodified	1248.6139	0.61388734	12	CON__P02769			yes	yes	0	0	1	2.25	0.829	1	1	2			15.054	15.054	2;3	6.632999999999999E-21	8440	DP1145_12	172.56	66.16		+	289490000	702	12	662	1145;1146;1147;1148	1685;1686;1687;1688	1686		2	9606
FKEANNFLWPFK	Unmodified	1539.7874	0.78743503	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		20.561	20.561	3	0.0068007	15915	DP1145_14	83.182	40.553			22863000	703	195	663	1149	1689;1690;1691	1690		3	9606
FKLPPGEYILVPSTFEPNKDGDFCIR	Unmodified	3038.5212	0.52117952	190	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	2	3	0			1			20.75	20.75	3	0.0077552	16619	DP1145_13	64.028	39.248			0	704	190	664	1150	1692	1692		1	9606
FLDGIYVSEK	Unmodified	1169.5968	0.5968403	237	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	4	0				1		18.96	18.96	2	0.0032088	13642	DP1145_14	104.2	33.676			90706000	705	237	665	1151	1693	1693		1	9606
FLEEFITPIVK	Unmodified	1334.7486	0.74858991	163	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1.5	0.5	1	1				21.494	21.494	2	3.5541E-33	18450	DP1145_12	188.66	132.23			12494000	706	163	666	1152;1153	1694;1695;1696	1695		3	9606
FLEQQNQVLETK	Unmodified	1475.762	0.76200815	23	CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q14CN4;Q3SY84;Q7RTS7;Q86Y46	KRT72;KRT71;KRT74;KRT73	Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73	yes	no	0	0	0	1	0	1					17.082	17.082	2	7.5881E-08	9969	DP1145_11	149.72	27.586		+	16681000	707	23	667	1154	1697	1697		1	9606
FLEQQNQVLQTK	Unmodified	1474.778	0.77799256	13;21	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253;P35908;CON__P35908v2;CON__P35908;CON__Q9R0H5;CON__Q7Z794;CON__Q6IFZ6;CON__Q6NXH9;Q7Z794	KRT1;KRT2;KRT77	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b	no	no	0	0	0	2.67	1.49	2	1	1	1	1	16.851	16.851	2	8.8862E-223	9182	DP1145_11	289.59	132.25		+	2024099999.9999998	708	13;21	668	1155;1156;1157;1158;1159;1160	1698;1699;1700;1701;1702;1703;1704;1705	1698		8	9606
FLFDSVSSQNVGLR	Unmodified	1567.7995	0.79945628	35	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1			20.265	20.265	2	0.033349	15922	DP1145_13	77.744	45.221			0	709	35	669	1161	1706	1706		1	9606
FLFENQTPAHVYYR	Unmodified	1783.8682	0.86820455	47	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				18.477	18.477	3	0.0051473	13910	DP1145_12	125.28	85.537			17097000	710	47	670	1162	1707	1707		0	9606
FLFSLFGQK	Unmodified	1085.591	0.59096706	445	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	4	0				1		22.032	22.032	2	3.4408E-07	18052	DP1145_14	135.84	59.068			33068000	711	445	671	1163	1708;1709	1708		2	9606
FLGPEDSHVVVASNSPCLK	Unmodified	2055.0095	0.0095254139	433	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					17.561	17.561	3	0.0081585	10594	DP1145_11	81.346	38.528			25180000	712	433	672	1164	1710	1710		1	9606
FLHKHDLDLICR	Unmodified	1565.8137	0.81366656	350;252	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	1	3.25	1.48	1		1	1	1	16.552	16.552	3	2.2864E-11	9957	DP1145_14	158.08	124.21			800480000	713	252;350	673	1165;1166;1167;1168	1711;1712;1713;1714;1715;1716;1717	1715		7	9606
FLILPDMLK	Unmodified	1088.6304	0.63038903	364	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	21.705	21.705	2	0.018061	16837	DP1145_15	87.696	39.828			5906100	714	364	674	1169	1718	1718		1	9606
FLLLFTFLK	Unmodified	1140.6947	0.69470385	731	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			24.287	24.287	2	0.01878	21754	DP1145_13	86.794	45.765			3783700	715	731	675	1170	1719	1719		1	9606
FLQQALDR	Unmodified	989.52943	0.52942943	766	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	2	0		1				16.615	16.615	2	0.0045984	11016	DP1145_12	113.5	11.808			8213300	716	766	676	1171	1720	1720		1	9606
FLSDVYPDGFK	Unmodified	1286.6183	0.61830402	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		19.464	19.464	2	4.0751E-18	14357	DP1145_14	169.65	92.878			1103100000	717	123	677	1172;1173;1174	1721;1722;1723;1724;1725;1726;1727	1726		7	9606
FLTYFPGR	Unmodified	999.5178	0.51780212	201	Q9UQ88;P21127	CDK11A;CDK11B	Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B	yes	no	0	0	0	2	0		1				19.077	19.077	2	0.037803	14750	DP1145_12	106.42	63.551			8997900	718	201	678	1175	1728	1728		0	9606
FLYECPWR	Unmodified	1169.5328	0.53280025	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				19.36	19.36	2	1.5680000000000001E-27	15374	DP1145_12	170.17	101.25			296150000	719	164	679	1176;1177	1729;1730;1731	1730		3	9606
FLYIWPNAR	Unmodified	1178.6237	0.62366417	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	20.592	20.592	2	2.0933999999999997E-28	15981	DP1145_14	174.64	128.67			4252799999.9999995	720	710	680	1178;1179;1180;1181	1732;1733;1734;1735;1736;1737;1738	1735		7	9606
FMDASALTGIPLPLIK	Unmodified	1685.9426	0.94261505	214	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	4	0				1		22.997	22.997	2	0.040023	19456	DP1145_14	69.261	28.765			1355000	721	214	681	1182	1739	1739		1	9606
FMNAVFFLLPK	Oxidation (M)	1341.7155	0.71551564	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22.086	22.086	2	0.001046	17201	DP1145_11	127.68	85.341			5674600	722	400	682	1183	1740;1741	1741	296	2	9606
FMRDVEPEDPMFLMDPFAIHR	2 Oxidation (M)	2624.1862	0.18618593	501	Q15773	MLF2	Myeloid leukemia factor 2	yes	yes	0	2	1	5	0					1	18.429	18.429	3	0.035814	12060	DP1145_15	46.663	28.268			9583100	723	501	683	1184	1742	1742	380;381	0	9606
FNADEFEDMVAEKR	Oxidation (M)	1715.7461	0.74610008	224	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	4.5	0.5				1	1	17.881	17.881	3	0.0035748	11175	DP1145_15	88.224	45.194			71803000	724	224	684	1185;1186	1743;1744	1744	178	2	9606
FNASQLITQR	Unmodified	1176.6251	0.62512073	655	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		18.06	18.06	2	0.00086372	12124	DP1145_14	135.71	46.013			251940000	725	655	685	1187	1745	1745		0	9606
FNDILGR	Unmodified	833.43955	0.43955179	588	Q8NEV1;P68400	CSNK2A3;CSNK2A1	Casein kinase II subunit alpha 3;Casein kinase II subunit alpha	yes	no	0	0	0	4	0				1		17.36	17.36	2	0.017684	11102	DP1145_14	97.473	20.626			56937000	726	588	686	1188	1746	1746		0	9606
FNIWPGYR	Unmodified	1051.524	0.52395013	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	4	0.816			1	1	1	19.882	19.882	2	1.7266E-15	15400	DP1145_13	154.11	89.076			330620000	727	665	687	1189;1190;1191	1747;1748;1749;1750	1748		3	9606
FNPFVTSDR	Unmodified	1081.5193	0.51925868	340	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	18.192	18.192	2	4.3308E-24	11656	DP1145_15	174.52	89.604			247740000	728	340	688	1192	1751;1752	1751		2	9606
FNPIETFLLGSCASDR	Unmodified	1825.8669	0.86688392	729	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	yes	yes	0	0	0	4	0				1		23.146	23.146	2	0.00181	19628	DP1145_14	134.56	91.719			1827900	729	729	689	1193	1753;1754	1753		2	9606
FNVLQYVVPEVK	Unmodified	1433.7919	0.79185171	469	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				21.79	21.79	2	0.0051456	18875	DP1145_12	114.89	79.242			3390300	730	469	690	1194	1755;1756	1755		2	9606
FPGDSVVTGR	Unmodified	1033.5193	0.51925868	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.877	16.877	2	1.0583000000000001E-35	10772	DP1145_13	185.72	111			542680000	731	124	691	1195	1757;1758	1758		2	9606
FPGQLNADLR	Unmodified	1129.588	0.58800695	394;137;464;113;454;669;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB3;TUBB1;TUBB6	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	0	2.5	1.12	1	1	1	1		17.743	17.743	2	8.290899999999999E-28	10656	DP1145_11	177.3	107.68			1979799999.9999998	732	113;137;394;464;514;454;669	692	1196;1197;1198;1199	1759;1760;1761;1762;1763;1764;1765;1766;1767	1759		9	9606
FPGQLNADLRK	Unmodified	1257.683	0.68296996	394;137;464;113;454;669;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB3;TUBB1;TUBB6	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	1	3.5	0.5			2	2		16.144	16.144	2;3	0.00082638	9111	DP1145_14	110.53	55.072			1969899999.9999998	733	113;137;394;464;514;454;669	693	1200;1201;1202;1203	1768;1769;1770;1771;1772;1773;1774	1771		7	9606
FPSLLTHNENMVAK	Oxidation (M)	1615.8028	0.8028271	379	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	4.33	0.471				2	1	16.914	16.914	2;3	7.6977E-05	10486	DP1145_14	141.58	102.57			438670000	734	379	694	1204;1205;1206	1775;1776;1777;1778	1777	276	3	9606
FPSLLTHNENMVAK	Unmodified	1599.8079	0.80791248	379	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	4	0				1		17.759	17.759	3	0.00075004	11829	DP1145_14	119.39	69.298			81046000	735	379	694	1207	1779	1779		1	9606
FQAQSLGTTYIYDIPEMFR	Oxidation (M)	2295.0882	0.088169665	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					21.716	21.716	2;3	0.0016659	16649	DP1145_11	97.776	65.269			80693000	736	441	695	1208;1209	1780;1781;1782	1781	318	3	9606
FQAQSLGTTYIYDIPEMFR	Unmodified	2279.0933	0.093255043	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					22.996	22.996	2	1.6245E-24	18479	DP1145_11	231.69	200.03			3637800	737	441	695	1210;1211	1783;1784;1785	1783		3	9606
FQDTAEALAAFTALMEGK	Unmodified	1912.9241	0.92406445	774	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			24.178	24.178	2	1.1631E-17	21567	DP1145_13	174.24	122.95			11217000	738	774	696	1212	1786;1787	1786		2	9606
FQMELKDVER	Oxidation (M)	1309.6336	0.63363651	612	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	1	1	2	0		1				15.218	15.218	3	0.014816	8671	DP1145_12	74.962	27.66			727640	739	612	697	1213	1788	1788	450	1	9606
FREDHPDLIQNAK	Unmodified	1581.79	0.78995423	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	3	0			1			15.038	15.038	3	0.025375	7975	DP1145_13	61.423	14.18			225000000	740	189	698	1214	1789	1789		1	9606
FSAPVVPSSFNFGGPAPGMN	Oxidation (M)	1994.9196	0.91964777	101	O95373	IPO7	Importin-7	yes	yes	0	1	0	2	0		1				21.968	21.968	2	0.010854	19182	DP1145_12	104.94	59.172			4099700	741	101	699	1215	1790	1790	62	1	9606
FSASGELGNGNIK	Unmodified	1292.6361	0.63607935	167	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				1		16.452	16.452	2	4.4798E-42	9614	DP1145_14	192.64	147.62			83755000	742	167	700	1216	1791;1792	1792		2	9606
FSSCGGGGGSFGAGGGFGSR	Unmodified	1764.7274	0.72743033	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	1	1		1			17.37	17.37	2	1.2018E-132	10069	DP1145_11	263.72	241		+	160880000	743	13	701	1217;1218	1793;1794	1793		2	9606
FSSVTVSTIDEEEEEIEAR	Unmodified	2168.9961	0.996103	700	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		20.119	20.119	2	3.0133E-34	15403	DP1145_14	248.67	197.72			12421000	744	700	702	1219	1795	1795		1	9606
FSVCVLGDQQHCDEAK	Unmodified	1891.8193	0.8192818	379	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	4	0				2		17.06	17.06	2;3	0.017703	10778	DP1145_14	94.538	66.485			240620000	745	379	703	1220;1221	1796;1797	1797		2	9606
FTDILVR	Unmodified	862.49125	0.49125301	51	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	0	1					17.936	17.936	2	0.021749	11105	DP1145_11	95.793	44.757			10703000	746	51	704	1222	1798	1798		0	9606
FTPDIPTMLYHGTQEER	Unmodified	2033.9517	0.95167618	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		2				19.23	19.23	2;3	0.0026323	15091	DP1145_12	102.73	39.64			14489000	747	724	705	1223;1224	1799;1800;1801	1799		3	9606
FTQDTQPHYIYSPR	Unmodified	1751.8267	0.82673367	471	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.37	16.37	3	0.01111	8524	DP1145_11	71.933	35.641			12313000	748	471	706	1225	1802	1802		1	9606
FTQTSGETTDADKEPAGEDK	Unmodified	2125.9288	0.92875171	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	1.12	1	1	1	1		13.929	13.929	3	3.962E-35	6919	DP1145_12	183.88	151.56			125960000	749	278	707	1226;1227;1228;1229	1803;1804;1805;1806;1807;1808;1809;1810;1811;1812	1808		10	9606
FVADGIFK	Unmodified	895.48035	0.48035398	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				2		18.66	18.66	1;2	0.0059277	13096	DP1145_14	110.81	43.814			71068000	750	210	708	1230;1231	1813;1814	1813		2	9606
FVDGLMIHSGDPVNYYVDTAVR	Oxidation (M)	2483.1791	0.17910994	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		19.961	19.961	3	0.00028775	15109	DP1145_14	117.55	96.806			57747000	751	210	709	1232	1815	1815	171	1	9606
FVDGVSTVAR	Unmodified	1049.5506	0.55055881	99	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	2	0		1				16.104	16.104	2	0.021906	10074	DP1145_12	83.998	36.341			13508000	752	99	710	1233	1816	1816		1	9606
FVEVMTEYNATQSK	Oxidation (M)	1661.7607	0.76068752	341	P61266	STX1B	Syntaxin-1B	yes	yes	0	1	0	2	0		1				16.735	16.735	2	9.4806E-05	11075	DP1145_12	164.9	125.12			0	753	341	711	1234	1817	1817	256	1	9606
FVGQDVEGER	Unmodified	1134.5306	0.53055165	192	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	3	0			1			15.425	15.425	2	0.033378	8505	DP1145_13	106.2	76.532			20112000	754	192	712	1235	1818	1818		0	9606
FVHFIDAPSLALIMPIVQR	Oxidation (M)	2182.1973	0.1972666	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	1	0	1					21.638	21.638	3	0.036397	16597	DP1145_11	56.817	31.273			4274300	755	605	713	1236	1819	1819	448	1	9606
FVINYDYPNSSEDYIHR	Unmodified	2130.9647	0.96468371	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3.33	0.471			2	1		18.906	18.906	2;3	5.8739E-06	14094	DP1145_13	162.22	118.04			304920000	756	193	714	1237;1238;1239	1820;1821;1822	1821		2	9606
FVINYDYPNSSEDYVHR	Unmodified	2116.949	0.94903365	611	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			18.585	18.585	3	0.0012421	13624	DP1145_13	118.21	82.181			52174000	757	611	715	1240	1823;1824	1824		2	9606
FVMEVEVDGQK	Oxidation (M)	1295.6068	0.60675306	437;649	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	1	0	3	0			1			16.135	16.135	2	9.4946E-07	9626	DP1145_13	143.03	91.688			44215000	758	437;649	716	1241	1825	1825	310	1	9606
FVQLEGAHPLEKSKWEGNYLFPR	Unmodified	2744.4075	0.40747039	672	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	2	2	0		1				15.865	15.865	6	0.042997	9722	DP1145_12	11.381	0			35925000	759	672	717	1242	1826	1826		1	9606
FVVMVTPEDLK	Oxidation (M)	1292.6686	0.66862503	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	1	0	1	0	1					18.86	18.86	2	1.4225E-06	12452	DP1145_11	140.45	84.015			286660000	760	441;43	718	1243	1827;1828	1827	32	2	9606
FVVMVTPEDLK	Unmodified	1276.6737	0.67371041	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1.5	0.5	1	1				19.756	19.756	2	1.5254000000000002E-25	13785	DP1145_11	182.76	127.65			199560000	761	441;43	718	1244;1245	1829;1830;1831	1829		3	9606
FWEVISDEHGIDPTGSYHGDSDLQLER	Unmodified	3101.4003	0.40027234	464	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	0	0	3	0			1			19.881	19.881	4	0.010738	15289	DP1145_13	48.097	19.167			439130000	762	464	719	1246	1832	1832		1	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	Unmodified	3101.4003	0.40027234	137	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			2			19.881	19.881	3;4	1.2877999999999998E-50	15433	DP1145_13	188.73	89.972			664310000	763	137	720	1247;1248	1833;1834;1835;1836	1835		4	9606
FWEVISDEHGIDPTGTYHGDSDLQLER	Unmodified	3115.4159	0.4159224	394;113	P04350;P68371	TUBB4A;TUBB4B	Tubulin beta-4A chain;Tubulin beta-4B chain	no	no	0	0	0	3	0			2			19.881	19.881	3;4	2.2558E-12	15428	DP1145_13	137.38	112.92			320610000	764	113;394	721	1249;1250	1837;1838;1839	1837		3	9606
FWYFVSQLK	Unmodified	1216.6281	0.62808085	414	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	21.217	21.217	2	0.025724	16179	DP1145_15	82.279	40.299			22048000	765	414	722	1251	1840	1840		1	9606
FYEEVHDLER	Unmodified	1335.6095	0.60953025	657;325	P55209;Q99733	NAP1L1;NAP1L4	Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4	no	no	0	0	0	3.5	0.5			1	1		16.61	16.61	2	7.1527E-09	10389	DP1145_13	146.69	115.46			332860000	766	325;657	723	1252;1253	1841;1842;1843	1841		3	9606
FYLENLEQMVK	Unmodified	1412.701	0.70098779	596	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				21.272	21.272	2	0.0028806	18150	DP1145_12	101.72	52.299			1477500	767	596	724	1254	1844;1845	1845		2	9606
FYNLVLLPR	Unmodified	1133.6597	0.65971533	465	Q13895	BYSL	Bystin	yes	yes	0	0	0	3	0			1			20.779	20.779	2	0.030114	16713	DP1145_13	79.469	52.214			19120000	768	465	725	1255	1846	1846		1	9606
FYSVNVDYSK	Unmodified	1220.5714	0.57135383	37	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	5	0					1	17.592	17.592	2	3.9366E-57	10803	DP1145_15	205.83	139.48			124800000	769	37	726	1256	1847;1848	1847		2	9606
FYVPPTQEDGVDPVEAFAQNVLSK	Unmodified	2649.2962	0.29624819	425	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	3.33	0.471			2	1		23.168	23.168	2	0.00026487	20227	DP1145_13	99.055	75.658			6874600	770	425	727	1257;1258;1259	1849;1850;1851	1850		3	9606
GAEAANVTGPGGVPVQGSK	Unmodified	1694.8588	0.85876208	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	3.5	0.5			1	1		15.651	15.651	2	1.2102E-110	8444	DP1145_14	233.28	197.62			123480000	771	390	728	1260;1261	1852;1853	1853		2	9606
GAGALAICQSKAAVRLK	Acetyl (Protein N-term)	1754.9825	0.9825228	95	O94988	FAM13A	Protein FAM13A	yes	yes	1	0	2	5	0					1	18.992	18.992	2	0.0090714	13024	DP1145_15	99.788	46.191			605030000	772	95	729	1262	1854	1854		0	9606
GAGLGFSTAPNK	Unmodified	1118.572	0.57202253	509	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	4	0				1		16.198	16.198	2	0.016785	9220	DP1145_14	79.974	36.532			40092000	773	509	730	1263	1855	1855		1	9606
GAGQQQSQEMMEVDR	2 Oxidation (M)	1724.7094	0.709397	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	2	0	4	0				1		13.823	13.823	2	0.0034804	5683	DP1145_14	89.805	67.023			744300	774	499	731	1264	1856;1857	1857	375;376	2	9606
GALEMVQMAVEAKFVQDTLK	2 Oxidation (M)	2239.1228	0.12284061	60	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	2	1	5	0					1	19.19	19.19	3	0.030203	13574	DP1145_15	54.292	32.756			87581000	775	60	732	1265	1858	1858	46;47	0	9606
GALNPADITVLFK	Unmodified	1357.7606	0.76055158	572	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	3	0			1			21.714	21.714	2	0.014032	18003	DP1145_13	79.07	43.162			3997600	776	572	733	1266	1859	1859		1	9606
GALQNIIPASTGAAK	Unmodified	1410.7831	0.78307794	114	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.06	18.06	2	0.0015075	12161	DP1145_14	121.68	73.974			60204000	777	114	734	1267	1860	1860		1	9606
GALQYLVPILTQTLTK	Unmodified	1758.0291	0.029121869	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	3	0			2			23.847	23.847	2;3	1.5874E-06	21065	DP1145_13	155.47	131.01			17461000	778	484	735	1268;1269	1861;1862;1863;1864	1863		4	9606
GANAVGYTNYPDNVVFK	Unmodified	1827.8792	0.87916317	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			18.872	18.872	2	7.0451E-33	14531	DP1145_12	190.36	133.73			765950000	779	164	736	1270;1271;1272	1865;1866;1867	1866		3	9606
GAVDALAAALAHISGASSFEPR	Unmodified	2110.0807	0.080716522	660	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	3	0			2			23.075	23.075	2;3	3.1252E-185	19969	DP1145_13	262.83	233.62			49805000	780	660	737	1273;1274	1868;1869;1870	1869		3	9606
GAVDGGLSIPHSTK	Unmodified	1337.6939	0.69392858	283	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				2		15.702	15.702	2;3	7.4881E-23	8485	DP1145_14	174.46	144.66			235360000	781	283	738	1275;1276	1871;1872;1873;1874;1875	1873		5	9606
GAVEALAAALAHISGATSVDQR	Unmodified	2107.1022	0.10218025	721	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				22.675	22.675	3	0.016112	20166	DP1145_12	60.561	45.633			1499100	782	721	739	1277	1876;1877	1877		2	9606
GAVEIIFK	Unmodified	875.51165	0.5116541	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		18.499	18.499	2	1.2738E-07	12857	DP1145_14	133.81	9.2184			1394000000	783	124	740	1278;1279	1878;1879;1880	1879		3	9606
GAWSNVLR	Unmodified	901.477	0.47699993	122;168	P05141;P12236;P12235	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	2.5	1.5	1			1		17.81	17.81	2	6.6647E-05	10921	DP1145_11	128.75	76.524			104510000	784	122;168	741	1280;1281	1881;1882;1883	1881		3	9606
GCTATLGNFAK	Unmodified	1138.5441	0.54409322	182	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		16.458	16.458	2	0.0010276	9770	DP1145_14	106.68	60.554			317340000	785	182	742	1282	1884	1884		1	9606
GDADQASNILASFGLSAR	Unmodified	1791.8751	0.87514042	274	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				22.351	22.351	2	4.0228E-06	19687	DP1145_12	193.45	110.37			4823000	786	274	743	1283	1885;1886	1885		2	9606
GDGPICLVLAPTR	Unmodified	1367.7231	0.72312022	193;611	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			19.729	19.729	2	0.00077352	15260	DP1145_13	127.83	92.607			91856000	787	611;193	744	1284	1887	1887		1	9606
GDLLEGANAYHCEK	Unmodified	1575.6988	0.69875596	614	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	1	0	1					16.155	16.155	3	0.016927	8128	DP1145_11	66.784	31.707			13440000	788	614	745	1285	1888	1888		1	9606
GDVTAEEAAGASPAK	Unmodified	1372.647	0.64703797	293	P49006	MARCKSL1	MARCKS-related protein	yes	yes	0	0	0	4	0				1		14.787	14.787	2	6.9128E-70	6971	DP1145_14	215.04	165.01			10456000	789	293	746	1286	1889	1889		1	9606
GEAAAERPGEAAVASSPSK	Unmodified	1783.8701	0.87005504	227	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	1	3	0			2			13.938	13.938	2;3	3.8148E-07	6272	DP1145_13	160.87	104.66			21695000	790	227	747	1287;1288	1890;1891	1891		2	9606
GEGAGPPPPLPPAQPGAEGGGDR	Unmodified	2079.9974	0.99738082	730	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			1			16.477	16.477	2	0.0034592	10345	DP1145_13	89.466	54.781			23056000	791	730	748	1289	1892	1892		1	9606
GEGAGQPSTSAQGQPAAPAPQKR	Unmodified	2190.0778	0.077756409	315	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	1	5	0					1	13.537	13.537	3	0.00026543	4534	DP1145_15	101.61	81.359			1623300	792	315	749	1290	1893;1894;1895;1896	1895		4	9606
GEHPSPGPAVAACAEAER	Acetyl (Protein N-term)	1846.8268	0.82681002	331	P58872	RHBDL3	Rhomboid-related protein 3	yes	yes	1	0	0	5	0					1	24.833	24.833	2	0.0067545	21127	DP1145_15	78.342	28.859			2340000	793	331	750	1291	1897	1897		1	9606
GENGMEDCVMALETLFSVLLSLCR	Unmodified	2743.2689	0.26892928	266	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	5	0					1	21.828	21.828	3	0.021545	17163	DP1145_15	31.282	6.5511			28411000	794	266	751	1292	1898	1898		1	9606
GEPETFLPLDYLEVKPTDEK	Unmodified	2319.1522	0.15220971	479	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	2	0		1				21.148	21.148	3	0.0012566	17952	DP1145_12	106.44	81.931			4596500	795	479	752	1293	1899	1899		1	9606
GFAFISFHR	Unmodified	1080.5505	0.55049923	89	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	4	0				1		19.029	19.029	2	0.0018806	13668	DP1145_14	113.89	66.04			0	796	89	753	1294	1900	1900		1	9606
GFAFVQYVNER	Unmodified	1328.6513	0.65133548	139	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		19.763	19.763	2	0.039713	14767	DP1145_14	80.755	43.564			0	797	139	754	1295	1901	1901		1	9606
GFAFVTFDDHDSVDKIVIQK	Unmodified	2280.1426	0.14264808	151	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		19.861	19.861	3	0.00035281	14939	DP1145_14	131.45	20.227			60277000	798	151	755	1296	1902	1902		1	9606
GFGFVDFNSEEDAK	Unmodified	1560.6733	0.67325272	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				20.179	20.179	2	0.019253	16625	DP1145_12	74.533	52.788			208440000	799	199	756	1297	1903	1903		1	9606
GFGFVTFDDHDPVDKIVLQK	Unmodified	2276.1477	0.14773345	207	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				1		20.362	20.362	3	0.0087175	15562	DP1145_14	79.514	53.597			88549000	800	207	757	1298	1904	1904		1	9606
GFGFVTYATVEEVDAAMNARPHK	Oxidation (M)	2525.2009	0.20090801	151	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	4	0				2		19.716	19.716	3;4	0.00016363	14781	DP1145_14	109.72	79.951			74005000	801	151	758	1299;1300	1905;1906;1907	1907	120	3	9606
GFPPSASLCLLDLVK	Unmodified	1615.8644	0.86436473	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.315	22.315	2	0.0053637	17542	DP1145_11	92.866	50.53			1964400	802	400	759	1301	1908	1908		1	9606
GFSGGMKDMYDQVLK	2 Oxidation (M)	1706.7644	0.76439269	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	2	1	1	0	2					16.227	16.227	2;3	0.0010204	8224	DP1145_11	118.76	78.603			267990000	803	441;43	760	1302;1303	1909;1910;1911	1911	33;34	3	9606
GFSLLATEDKEALKK	Unmodified	1648.9036	0.903587	153	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	2	2	0		1				16.776	16.776	3	0.017996	11243	DP1145_12	102.9	81.55			17520000	804	153	761	1304	1912	1912		0	9606
GFSSGSAVVSGGSR	Unmodified	1253.6	0.60002819	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	3.25	1.48	1		1	1	1	15.213	15.213	2	4.6278E-10	6820	DP1145_11	160.77	129.24		+	364330000	805	21	762	1305;1306;1307;1308	1913;1914;1915;1916;1917;1918;1919	1913		7	9606
GFVDDIIQPSSTR	Unmodified	1433.7151	0.71505795	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.75	1.64	1			1	2	19.337	19.337	2	1.7547000000000002E-122	13225	DP1145_11	242.35	187.28			52591000	806	124	763	1309;1310;1311;1312	1920;1921;1922;1923	1920		4	9606
GGAYYPVTVK	Unmodified	1053.5495	0.54949617	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.4	16.4	2	9.8959E-05	9997	DP1145_13	117.81	82.193			2364100000	807	710	764	1313;1314;1315;1316;1317	1924;1925;1926;1927;1928;1929;1930;1931	1926		8	9606
GGCVDSTNQSLALLLMTLGQQDVSK	Oxidation (M)	2650.2942	0.29421605	770	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	1	0	4	0				1		23.155	23.155	3	0.00077776	19640	DP1145_14	69.981	55.197			2858800	808	770	765	1318	1932	1932	543	1	9606
GGDPFWDGPGDPMR	Oxidation (M)	1518.6198	0.61977736	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2	0		1				18.977	18.977	2	0.026423	14672	DP1145_12	89.561	50.847			25483000	809	644	766	1319	1933	1933	464	1	9606
GGDPFWDGPGDPMR	Unmodified	1502.6249	0.62486274	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				19.978	19.978	2	0.00071899	16247	DP1145_12	110.93	80.135			7474100	810	644	766	1320	1934	1934		1	9606
GGDSIGETPTPGASK	Unmodified	1372.647	0.64703797	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	3	1		1		1		14.777	14.777	2	0.0016214	8127	DP1145_12	107.11	66.232			23495000	811	84	767	1321;1322	1935;1936	1935		2	9606
GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR	Unmodified	2398.0111	0.011133407	21	P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					20.14	20.14	2	0.00047873	14363	DP1145_11	64.422	32.147		+	0	812	21	768	1323	1937	1937		1	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	Unmodified	2382.9446	0.94456998	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.8	1.6	2		1	1	1	15.048	15.048	2;3	0	6542	DP1145_11	294.94	230.35		+	320430000	813	13	769	1324;1325;1326;1327;1328	1938;1939;1940;1941;1942;1943;1944;1945	1938		8	9606
GGGGNFGPGPGSNFR	Unmodified	1376.6222	0.62216062	207	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.561	16.561	2	4.38E-06	9718	DP1145_14	152.64	117.19			239670000	814	207	770	1329	1946;1947	1946		2	9606
GGLLLPSTDHQR	Unmodified	1292.6837	0.68369824	802				yes	yes	0	0	0	1	0	1					16.114	16.114	2	0.0096088	8077	DP1145_11	87.806	41.81	+		9824700	815	802	771	1330	1948	1948		1	9606
GGNEPPPPPPPFR	Unmodified	1357.6779	0.67788459	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	4	0				1		17.121	17.121	2	0.0026117	10378	DP1145_14	97.565	53.795			44307000	816	644	772	1331	1949	1949		1	9606
GGNFGFGDSR	Unmodified	1012.4363	0.43625733	207	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.759	16.759	2	0.00016327	10301	DP1145_14	114.89	80.722			59770000	817	207	773	1332	1950;1951	1951		2	9606
GGNRFEPYANPTKR	Unmodified	1605.8012	0.80118762	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	2	3	0			1			14.485	14.485	3	0.013251	7028	DP1145_13	101.72	61.247			10445000	818	310	774	1333	1952	1952		0	9606
GGPNIITLADIVKDPVSR	Unmodified	1864.0418	0.04181182	588	Q8NEV1;P68400	CSNK2A3;CSNK2A1	Casein kinase II subunit alpha 3;Casein kinase II subunit alpha	yes	no	0	0	1	4	0				1		20.661	20.661	3	0.014398	16207	DP1145_14	110.6	88.756			28866000	819	588	775	1334	1953;1954	1954		2	9606
GGPTPQEAIQR	Unmodified	1152.5887	0.58873523	697	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	4	0				1		14.924	14.924	2	0.0014194	7227	DP1145_14	104.2	75.993			37239000	820	697	776	1335	1955	1955		1	9606
GGQDNIPVLK	Unmodified	1039.5662	0.56620887	173	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	0	1.5	0.5	1	1				16.578	16.578	2	0.0016547	10916	DP1145_12	108.74	40.762			37363000	821	173	777	1336;1337	1956;1957	1957		2	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	Unmodified	3222.2743	0.27429656	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	1	1		1			15.223	15.223	3	3.1533E-48	8195	DP1145_13	172.23	169.32		+	210110000	822	20	778	1338;1339	1958;1959	1959		2	9606
GGSGSGPTIEEVD	Unmodified	1203.5255	0.52552585	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.178	17.178	2	0.0042424	11287	DP1145_13	93.649	66.956			112290000	823	156	779	1340	1960	1960		1	9606
GGSWVVIDSSINPR	Unmodified	1485.7576	0.75759147	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.343	19.343	2	1.0354E-87	13223	DP1145_11	227.36	159.23			198960000	824	441	780	1341	1961;1962	1961		2	9606
GGVIFSVK	Unmodified	805.46979	0.46978929	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				17.275	17.275	2	2.1137E-05	11968	DP1145_12	130.04	80.449			74832000	825	698	781	1342	1963	1963		1	9606
GHALLILRPEELGFLR	Unmodified	1833.0625	0.062487683	731	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	5	0					1	20.345	20.345	3	0.038659	14932	DP1145_15	67.115	49.874			0	826	731	782	1343	1964	1964		1	9606
GHAVGDIPGVR	Unmodified	1076.5727	0.57269123	359	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	15.018	15.018	2	0.00071936	6921	DP1145_15	108.74	82.849			48061000	827	359	783	1344	1965;1966	1965		2	9606
GHENVEAAQAEYIEK	Unmodified	1686.7849	0.78492843	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0.894			2	1	2	15.436	15.436	2;3	3.1598E-32	7979	DP1145_14	211.51	169.43			2712200000	828	124	784	1345;1346;1347;1348;1349	1967;1968;1969;1970;1971;1972;1973;1974;1975;1976	1972		10	9606
GHNCPKPVLNFYEANFPANVMDVIAR	Unmodified	2972.4426	0.44255204	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			1			21.332	21.332	4	0.025862	17528	DP1145_13	41.703	23.602			3965800	829	193	785	1350	1977	1977		1	9606
GHNTNVGAIVFHPK	Unmodified	1489.779	0.77899561	53	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			15.276	15.276	3	0.030012	8236	DP1145_13	83.856	42.639			120100000	830	53	786	1351	1978	1978		0	9606
GHQLLEEVTQGDMSAADTFLSDLPR	Oxidation (M)	2745.2916	0.29157351	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	3	0			1			21.977	21.977	3	2.3201E-05	18395	DP1145_13	98.299	85.622			20796000	831	575	787	1352	1979;1980	1980	431	2	9606
GHTAMLHTGSWHPK	Unmodified	1558.7463	0.74631528	732	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	3	0			1			14.26	14.26	3	0.0030302	6802	DP1145_13	70.628	48.768			9281700	832	732	788	1353	1981	1981		1	9606
GHYTEGAELVDSVLDVVR	Unmodified	1957.9745	0.97452012	394;137;464;454	P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	3	1.1	1		2	2		21.606	21.606	2;3	8.2518E-17	17874	DP1145_13	211.83	178.51			2243100000	833	137;394;464;454	789	1354;1355;1356;1357;1358	1982;1983;1984;1985;1986;1987;1988;1989	1984		8	9606
GHYTEGAELVDSVLDVVRK	Unmodified	2086.0695	0.069483134	394;137;464;454	P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	1	3	0			2			20.579	20.579	2;3	2.9107000000000003E-131	16518	DP1145_13	236.75	155.1			520720000	834	137;394;464;454	790	1359;1360	1990;1991;1992	1991		3	9606
GIAYIEFK	Unmodified	939.50657	0.50656873	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			18.676	18.676	2	0.0023718	13536	DP1145_13	111.65	64.882			329980000	835	199	791	1361;1362	1993;1994	1994		2	9606
GIEKPPFELPDFIK	Unmodified	1628.8814	0.881395	452	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	1	2	0		1				20.556	20.556	3	0.0057826	17130	DP1145_12	65.495	30.98			4608600	836	452	792	1363	1995	1995		1	9606
GIFTSEIGTK	Unmodified	1051.555	0.55497548	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1.5	0.5	1	1				17.901	17.901	2	3.6805E-08	10888	DP1145_11	140.35	98.066			11330000	837	400	793	1364;1365	1996;1997;1998	1997		3	9606
GILAADESTGSIAK	Unmodified	1331.6933	0.69325988	112	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	5	0					1	16.753	16.753	2	0.0031163	9548	DP1145_15	116.77	68.342			0	838	112	794	1366	1999	1999		1	9606
GILQELFLNK	Unmodified	1173.6758	0.67575932	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	3	0.816		1	1	1		22.168	22.168	2	3.1144E-06	19454	DP1145_12	133.6	78.824			60274000	839	644	795	1367;1368;1369	2000;2001;2002;2003;2004	2000		5	9606
GIPEFWFTIFR	Unmodified	1411.7289	0.72885752	657	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			24.378	24.378	2	0.00020221	21857	DP1145_13	115.7	79.791			4326400	840	657	796	1370	2005	2005		1	9606
GIPEFWLTVFK	Unmodified	1335.7227	0.72270951	325	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3.5	0.5			1	1		23.653	23.653	2	0.00043535	20369	DP1145_14	126.24	93.43			41596000	841	325	797	1371;1372	2006;2007;2008;2009;2010	2010		5	9606
GIQEEMEALVK	Oxidation (M)	1261.6224	0.62240312	503	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	1	0	1.5	0.5	1	1				16.796	16.796	2	0.00070622	9301	DP1145_11	129.42	92.661			39233000	842	503	798	1373;1374	2011;2012	2011	382	2	9606
GISHVIVDEIHER	Unmodified	1502.7841	0.78414057	424	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					16.667	16.667	3	0.0051877	8995	DP1145_11	128.21	95.783			12235000	843	424	799	1375	2013	2013		0	9606
GISPVPINLR	Unmodified	1064.6342	0.63422886	304	P50570	DNM2	Dynamin-2	no	no	0	0	0	2	0		1				18.276	18.276	2	0.032043	13678	DP1145_12	76.478	11.91			7832400	844	304	800	1376	2014	2014		1	9606
GIVVYTGDR	Unmodified	978.51345	0.51344502	119	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	0	1					16.3	16.3	2	0.022947	8324	DP1145_11	97.798	58.256			0	845	119	801	1377	2015	2015		1	9606
GKGSLGSQGAKDEPEEELQK	Unmodified	2086.0178	0.017841494	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	2	3	1		1		1		14.277	14.277	3	0.0025374	7307	DP1145_12	141.22	103.37			7736000	846	451	802	1378;1379	2016;2017	2016		0	9606
GKSEVPEDLAGFIELFQTPSHTK	Unmodified	2529.2751	0.27511881	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	1	1		1			21.769	21.769	3	6.2662E-39	18138	DP1145_13	183.75	159.2			129130000	847	278	803	1380;1381	2018;2019;2020;2021;2022	2022		5	9606
GLAPDLPEDLYHLIK	Unmodified	1692.9087	0.90867238	361	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	21.453	21.453	3	0.025874	16530	DP1145_15	63.292	35.956			36268000	848	361	804	1382	2023	2023		1	9606
GLAPDLPEDLYHLIKK	Unmodified	1821.0036	0.0036354	361	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	20.348	20.348	3	0.009553	15039	DP1145_15	77.372	54.569			5160200	849	361	805	1383	2024	2024		1	9606
GLAPVQAYLHIPDIIK	Unmodified	1747.0032	0.0032414695	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.78	1.31	2	2	2	2	1	21.045	21.045	2;3	2.7956E-32	15579	DP1145_11	189.24	142.84			326970000	850	164	806	1384;1385;1386;1387;1388;1389;1390;1391;1392	2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041;2042;2043;2044;2045	2028		21	9606
GLCGAIHSSIAK	Unmodified	1212.6285	0.62849155	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		15.306	15.306	3	0.029398	7732	DP1145_14	83.182	43.245			50722000	851	249	807	1393	2046	2046		0	9606
GLDVDSLVIEHIQVNK	Unmodified	1777.9574	0.95741349	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					2	19.991	19.991	2;3	0.02551	14584	DP1145_15	69.261	34.829			212900000	852	198	808	1394;1395	2047;2048	2047		2	9606
GLDVEDVK	Unmodified	873.44436	0.4443624	193;611	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			16.05	16.05	2	0.0059514	9424	DP1145_13	107.32	55.018			143040000	853	611;193	809	1396	2049;2050	2049		2	9606
GLEEIPVFDISEK	Unmodified	1474.7555	0.75552578	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0		1				21.091	21.091	2	1.1081E-15	17865	DP1145_12	166.69	120.78			12577000	854	529	810	1397	2051	2051		1	9606
GLGDCLVK	Unmodified	860.44259	0.44258826	122;168	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	1	0	1					16.677	16.677	2	0.027782	8986	DP1145_11	90.777	15.587			86210000	855	122;168	811	1398	2052	2052		1	9606
GLGTDEESILTLLTSR	Unmodified	1703.8941	0.89414453	147	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	4	0				1		23.259	23.259	2	0.0020231	19772	DP1145_14	133.32	87.492			2692700	856	147	812	1399	2053;2054;2055	2053		3	9606
GLLEESSFATLFPK	Unmodified	1537.8028	0.80281033	458	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	3.33	0.471			2	1		22.211	22.211	2	4.5914E-10	18666	DP1145_13	177.57	124.45			7320300	857	458	813	1400;1401;1402	2056;2057;2058	2057		3	9606
GLLPEELTPLILATQK	Unmodified	1735.0131	0.013137454	174	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	4	0				1		22.688	22.688	2	8.0645E-23	18996	DP1145_14	179.6	124.35			7400500	858	174	814	1403	2059;2060	2059		2	9606
GLSEDTTEETLK	Unmodified	1321.6249	0.62490554	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				16.012	16.012	2	0.0012511	9927	DP1145_12	142.43	89.338			0	859	199	815	1404	2061	2061		1	9606
GLTPSQIGVILR	Unmodified	1252.7503	0.75032125	361	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	19.591	19.591	2	0.0013408	13984	DP1145_15	101.64	62.622			71822000	860	361	816	1405	2062	2062		1	9606
GLVLGPIHK	Unmodified	932.58074	0.58073672	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				16.179	16.179	2	0.015438	10201	DP1145_12	90.986	50.413			19233000	861	142	817	1406	2063	2063		1	9606
GLVMVKPGSIKPHQK	Oxidation (M)	1633.9338	0.9337817	296	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	1	2	3.5	0.5			1	1		13.961	13.961	3;4	0.0022694	5904	DP1145_14	98	78.994			21180000	862	296	818	1407;1408	2064;2065	2065	230	2	9606
GLYDGPVCEVSVTPK	Unmodified	1619.7865	0.78650834	503	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	2.33	1.25	1	1		1		18.432	18.432	2	0.0043945	12779	DP1145_14	96.334	40.613			55113000	863	503	819	1409;1410;1411	2066;2067;2068	2068		2	9606
GMAFPVHIIFLDVYDPGK	Oxidation (M)	2034.0285	0.028469942	800				yes	yes	0	1	0	5	0					1	23.994	23.994	3	0.025492	20108	DP1145_15	65.467	35.849	+		10927000	864	800	820	1412	2069	2069	558	1	9606
GMMTQGRAETQLETTQAGEK	2 Oxidation (M)	2197.9943	0.99434563	634	Q96L96	ALPK3	Alpha-protein kinase 3	yes	yes	0	2	1	5	0					1	19.638	19.638	3	0.031151	14050	DP1145_15	51.819	20.705			7417900	865	634	821	1413	2070	2070	459;460	0	9606
GMTLVTPLQLLLFASK	Oxidation (M)	1746.9954	0.9953789	424	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	1	0	1					24.191	24.191	2	0.039514	20098	DP1145_11	108.59	73.001			0	866	424	822	1414	2071	2071	306	1	9606
GNIPTLNR	Unmodified	883.48756	0.48756462	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.695	15.695	2	1.6638E-07	7447	DP1145_11	132.09	44.065			396990000	867	441	823	1415	2072;2073	2073		2	9606
GNSRPGTPSAEGGSTSSTLR	Unmodified	1917.914	0.91404512	244	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3.75	0.829			2	1	1	13.823	13.823	2;3	6.701799999999999E-36	6152	DP1145_13	190.79	164.93			198230000	868	244	824	1416;1417;1418;1419	2074;2075;2076;2077;2078;2079;2080;2081	2075		8	9606
GPAVGIDLGTTYSCVGVFQHGK	Unmodified	2262.1103	0.11030209	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.48	19.48	3	0.041896	14963	DP1145_13	46.209	26.338			153330000	869	161	825	1420	2082	2082		1	9606
GPFPIIV	Unmodified	741.44251	0.44251191	9	CON__P02666			yes	yes	0	0	0	3.33	1.7	1			1	1	22.514	22.514	1	0.0089826	18698	DP1145_14	102.87	102.87		+	597250000	870	9	826	1421;1422;1423	2083;2084;2085	2084		1	
GPGLNLPPPIGGAGPPLGLPKPK	Unmodified	2143.2517	0.25174502	608	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	1	3	0			1			19.776	19.776	3	0.035561	15235	DP1145_13	62.468	54.65			0	871	608	827	1424	2086	2086		1	9606
GPIAFWAR	Unmodified	916.49192	0.49192172	761	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	3	0			1			19.28	19.28	2	0.022278	14611	DP1145_13	96.048	73.028			13895000	872	761	828	1425	2087	2087		1	9606
GPLLVSTESHPVK	Unmodified	1362.7507	0.75071518	780	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		15.306	15.306	2	9.4469E-06	7823	DP1145_14	140.78	108.03			41033000	873	780	829	1426	2088;2089	2088		2	9606
GPLQSVQVFGR	Unmodified	1186.6459	0.64585618	356	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	18.692	18.692	2	3.5676E-55	12543	DP1145_15	204.36	161.5			133250000	874	356	830	1427	2090;2091	2090		2	9606
GPPDFSSDEEREPTPVLGSGAAAAGR	Unmodified	2569.2045	0.20447307	267	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	3.5	0.5			1	1		17.6	17.6	3	0.00092107	11599	DP1145_14	80.002	67.331			50777000	875	267	831	1428;1429	2092;2093	2093		2	9606
GPPPPPGDENREMDDPSVGPK	Oxidation (M)	2202.9852	0.98516116	452	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	1	2.5	0.5		1	1			14.721	14.721	3	0.022374	8018	DP1145_12	60.034	40.481			22157000	876	452	832	1430;1431	2094;2095	2094	347	1	9606
GPQGPGGGGINVQEILTSIMGSPNSHPSEELLK	Oxidation (M)	3315.6405	0.64051939	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	3	0			1			21.778	21.778	3	7.4243E-13	18136	DP1145_13	105.5	77.35			17662000	877	644	833	1432	2096	2096	465	1	9606
GPQPPTVSPIR	Unmodified	1147.635	0.63495714	280	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	3.67	1.25		1		1	1	16.059	16.059	2	0.00010574	8440	DP1145_15	113.66	85.44			137090000	878	280	834	1433;1434;1435	2097;2098;2099;2100	2099		4	9606
GPVNYNVTTEFEK	Unmodified	1496.7147	0.7147236	574	Q8IXQ4	GPALPP1	GPALPP motifs-containing protein 1	yes	yes	0	0	0	4	0				1		18.054	18.054	2	0.014472	12174	DP1145_14	101.93	68.184			0	879	574	835	1436	2101	2101		1	9606
GQDPGAPQLQSESKPPK	Unmodified	1762.885	0.88497683	524	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	4	0				1		14.403	14.403	3	0.0047136	6454	DP1145_14	91.789	68.37			3808700	880	524	836	1437	2102	2102		1	9606
GQIGAPMPGK	Unmodified	954.49569	0.49568646	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				15.068	15.068	2	0.027804	8501	DP1145_12	78.77	42.01			31738000	881	164	837	1438	2103	2103		1	9606
GQILMPNIGYGSNKK	Oxidation (M)	1634.845	0.84502627	380	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	1	1	5	0					1	16.081	16.081	3	0.013481	8504	DP1145_15	71.031	45.977			0	882	380	838	1439	2104	2104	277	1	9606
GQNDLMGTAEDFADQFLR	Oxidation (M)	2042.9004	0.90036889	48	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	1	0	1	0	2					22.571	22.571	2	7.1052E-110	17785	DP1145_11	234.04	207.38			7374800	883	48	839	1440;1441	2105;2106;2107	2105	38	3	9606
GQNPNATFGEVSK	Unmodified	1347.6419	0.64189301	94	O94842;O94900;O15405	TOX4;TOX;TOX3	TOX high mobility group box family member 4;Thymocyte selection-associated high mobility group box protein TOX;TOX high mobility group box family member 3	yes	no	0	0	0	2.5	0.5		1	1			15.556	15.556	2	0.00068626	8532	DP1145_13	138.76	85.011			70327000	884	94	840	1442;1443	2108;2109	2109		0	9606
GQSEDPGSLLSLFR	Unmodified	1504.7522	0.75217174	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0.816	1	1	1			22.074	22.074	2	1.2629E-54	17238	DP1145_11	202.56	128.18			27485000	885	142	841	1444;1445;1446	2110;2111;2112;2113;2114	2110		5	9606
GQSPAGDGSPEPPTPR	Unmodified	1548.7168	0.71684887	702	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	2	0		1				14.767	14.767	2	0.013157	8125	DP1145_12	82.705	61.868			5074600	886	702	842	1447	2115	2115		1	9606
GQVLPAHTLLNTVDVELIYEGVK	Unmodified	2507.3635	0.36353989	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.671	21.671	3	3.2029E-05	16586	DP1145_11	123.55	104.16			8224500	887	441	843	1448	2116	2116		1	9606
GRDDCGTFEDTGPLLQFDYK	Unmodified	2333.027	0.027025972	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.5		2	2			20.117	20.117	2;3	2.1901E-25	16483	DP1145_12	169.7	140.83			591990000	888	480	844	1449;1450;1451;1452	2117;2118;2119;2120;2121;2122	2117		6	9606
GSENKTDLDNSIGIK	Unmodified	1589.7897	0.78967946	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	3	0			1			15.731	15.731	3	0.00041253	8916	DP1145_13	125.73	77.498			0	889	698	845	1453	2123	2123		1	9606
GSFSDTGLGDGK	Unmodified	1139.5095	0.50948185	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				16.028	16.028	2	0.0062891	9980	DP1145_12	92.239	60.709			114310000	890	772	846	1454	2124;2125	2125		2	9606
GSLGGGFSSGGFSGGSFSR	Unmodified	1706.7649	0.76486169	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	0	1					18.86	18.86	2	0.028392	12601	DP1145_11	89.231	55.355		+	364930000	891	18	847	1455	2126	2126		1	9606
GSLGQGTAPVLPGK	Unmodified	1280.7089	0.70885036	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				16.566	16.566	2	0.00065736	10826	DP1145_12	132.25	68.433			171860000	892	451	848	1456;1457	2127;2128	2128		2	9606
GSLGSQGAKDEPEEELQK	Unmodified	1900.9014	0.90141475	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2.5	1.12	1	1	1	1		15.057	15.057	2;3	1.5668E-18	7540	DP1145_14	184.87	133.51			83684000	893	451	849	1458;1459;1460;1461	2129;2130;2131;2132	2132		4	9606
GSNMDFREPTEEER	Oxidation (M)	1711.7108	0.71077721	491	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	1	1	4	0				1		14.687	14.687	3	0.006911	6853	DP1145_14	109.44	96.95			11523000	894	491	850	1462	2133	2133	371	0	9606
GSNTIASAAADKIPGLLGVFQK	Unmodified	2157.1794	0.17936793	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	2	0		1				21.018	21.018	3	0.0072806	17787	DP1145_12	70.072	37.239			5877100	895	322	851	1463	2134	2134		1	9606
GSPLVVISQGK	Unmodified	1083.6288	0.62880913	503	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	2.5	1.5	1			1		17.163	17.163	2	0.016345	9799	DP1145_11	84.817	50.645			59768000	896	503	852	1464;1465	2135;2136;2137	2136		3	9606
GSPTGGAQLLK	Unmodified	1027.5662	0.56620887	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		1				15.467	15.467	2	0.0087455	8999	DP1145_12	128.6	99.453			405350000	897	480	853	1466	2138	2138		0	9606
GSTIETEQKEDKGEDSEPVTSK	Unmodified	2393.1082	0.10817264	580	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	2	3	0			1			13.544	13.544	3	0.0055675	5766	DP1145_13	146.15	117.69			5536900	898	580	854	1467	2139;2140	2139		2	9606
GSVLEPEGTVEIK	Unmodified	1356.7137	0.71366097	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.559	17.559	2	4.3209E-41	10413	DP1145_11	214.82	114.58			685820000	899	441	855	1468;1469	2141;2142	2141		1	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	Unmodified	3311.3008	0.30084566	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					15.39	15.39	3	3.3233E-23	7093	DP1145_11	128.63	97.39		+	45425000	900	13	856	1470	2143;2144	2143		2	9606
GTAYTFFTPGNLK	Unmodified	1415.7085	0.70851601	611	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			19.68	19.68	2	0.00013081	15134	DP1145_13	133.75	89.549			32826000	901	611	857	1471	2145;2146	2146		2	9606
GTAYVVYEDIFDAK	Unmodified	1589.7613	0.76133944	782	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	21.27	21.27	2	0.012305	16177	DP1145_15	122.18	92.511			0	902	782	858	1472	2147	2147		1	9606
GTDTQTPAVLSPSK	Unmodified	1400.7147	0.7147236	280	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				15.844	15.844	2	0.0024907	9645	DP1145_12	119.74	63.312			0	903	280	859	1473	2148	2148		1	9606
GTEASSGTEAATGLEGEEK	Unmodified	1822.8068	0.80684567	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	1	0	1					21.638	21.638	2	0.0019933	16534	DP1145_11	125.36	88.831			13329000	904	575	860	1474	2149	2149		1	9606
GTGIVSAPVPK	Unmodified	1024.5917	0.59169534	182	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		15.704	15.704	2	0.018587	8517	DP1145_14	82.645	50.885			258350000	905	182	861	1475	2150;2151;2152	2150		3	9606
GTHFVQLCCQR	Unmodified	1404.6391	0.63907301	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		15.366	15.366	2;3	3.4684E-05	8466	DP1145_13	136.57	108.55			1061699999.9999999	906	710	862	1476;1477;1478;1479	2153;2154;2155;2156;2157	2155		5	9606
GTPLDTEVPMER	Oxidation (M)	1359.634	0.63403044	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			16.573	16.573	2	1.2466E-06	10852	DP1145_12	147.73	116.2			466350000	907	164	863	1480;1481;1482	2158;2159;2160	2159	140	3	9606
GTPLDTEVPMER	Unmodified	1343.6391	0.63911582	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			17.572	17.572	2	0.00069358	12549	DP1145_12	125.97	52.082			633010000	908	164	863	1483;1484;1485	2161;2162;2163	2162		2	9606
GVAMNPVEHPFGGGNHQHIGKPSTIR	Oxidation (M)	2752.3616	0.3615996	382	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	1	4	0				3		15.199	15.199	4;5;6	0.00015026	7660	DP1145_14	79.177	53.242			312650000	909	382	864	1486;1487;1488	2164;2165;2166;2167;2168	2164	278	5	9606
GVAMNPVEHPFGGGNHQHIGKPSTIR	Unmodified	2736.3667	0.36668498	382	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				1		15.704	15.704	5	0.005949	8453	DP1145_14	52.162	21.672			40286000	910	382	864	1489	2169	2169		0	9606
GVAYTLLTPK	Unmodified	1061.6121	0.61209643	569	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				18.176	18.176	2	0.01552	13311	DP1145_12	122.52	65.235			22653000	911	569	865	1490	2170	2170		0	9606
GVDLYLR	Unmodified	834.45995	0.45995289	59	O43592	XPOT	Exportin-T	yes	yes	0	0	0	2	0		1				17.776	17.776	2	0.0015429	12685	DP1145_12	117.7	38.245			13437000	912	59	866	1491	2171	2171		1	9606
GVEGLIDIENPNR	Unmodified	1424.726	0.72595699	453	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	4	0				1		19.26	19.26	2	6.4161E-85	13983	DP1145_14	223.31	172.84			60246000	913	453	867	1492	2172	2172		1	9606
GVEICIATPGR	Unmodified	1171.6019	0.60194245	193;611	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			17.699	17.699	2	0.0088446	12070	DP1145_13	105.4	53.869			0	914	611;193	868	1493	2173	2173		1	9606
GVFEAIVDQSPFVPEETMEEQK	Oxidation (M)	2524.1679	0.16793613	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3	0.894		2	1	2		21.892	21.892	2;3	5.3883E-20	18244	DP1145_13	166.59	131.16			445780000	915	480	869	1494;1495;1496;1497;1498	2174;2175;2176;2177;2178;2179;2180;2181;2182	2178	366	9	9606
GVFEAIVDQSPFVPEETMEEQK	Unmodified	2508.173	0.17302151	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.75	0.829		2	1	1		22.386	22.386	2;3	6.0674E-97	19707	DP1145_12	277.41	233.82			192700000	916	480	869	1499;1500;1501;1502	2183;2184;2185;2186;2187;2188;2189;2190	2187		8	9606
GVFEAIVDQSPFVPEETMEEQKTK	Oxidation (M)	2753.3106	0.31057762	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2	0		1				20.732	20.732	3	0.013802	17346	DP1145_12	50.323	30.394			22189000	917	480	870	1503	2191	2191	366	1	9606
GVFVQSVLPYFVATK	Unmodified	1653.913	0.91302948	517	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	4	0				1		22.211	22.211	2	0.0040716	18304	DP1145_14	124.12	90.238			11507000	918	517	871	1504	2192	2192		1	9606
GVGIISEGNETVEDIAAR	Unmodified	1828.9167	0.91667089	119;173	P05023;P13637;P50993	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	no	no	0	0	0	1	0	1					19.343	19.343	2	0.0089628	13361	DP1145_11	93.348	49.93			22774000	919	119;173	872	1505	2193	2193		1	9606
GVIDLIFEK	Unmodified	1032.5855	0.58554733	419	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2	0		1				21.46	21.46	2	1.2193E-05	18413	DP1145_12	127.02	68.104			9322900	920	419	873	1506	2194	2194		1	9606
GVISDILDWK	Unmodified	1144.6128	0.61282471	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	3	1.41	1	1	1	1	1	22.264	22.264	2	2.7481E-17	17551	DP1145_15	160.63	104.95			148950000	921	441	874	1507;1508;1509;1510;1511	2195;2196;2197;2198;2199	2199		5	9606
GVIVDKDFSHPQMPK	Oxidation (M)	1712.8556	0.85559095	292	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	3	0			1			15.138	15.138	3	0.026248	8035	DP1145_13	74.78	41.476			22166000	922	292	875	1512	2200	2200	229	0	9606
GVLLFGPPGTGK	Unmodified	1141.6495	0.64954457	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3	0			1			19.28	19.28	2	0.0089541	14562	DP1145_13	88.681	60.599			18356000	923	248	876	1513	2201	2201		1	9606
GVLLMLFGGVPK	Oxidation (M)	1245.7155	0.71551564	475	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	1	0	2	0		1				21.783	21.783	2	0.0024518	18899	DP1145_12	103.56	64.541			3820200	924	475	877	1514	2202;2203	2203	362	2	9606
GVMLAVDAVIAELKK	Oxidation (M)	1571.8957	0.89566485	159	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	1	3	0			1			21.078	21.078	3	0.01764	17142	DP1145_13	68.168	43.668			3440100	925	159	878	1515	2204	2204	129	0	9606
GVQSAAVQAFLK	Unmodified	1217.6768	0.67682195	533	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	2	0		1				18.877	18.877	2	6.146E-16	14511	DP1145_12	175.51	92.308			39684000	926	533	879	1516	2205	2205		0	9606
GVSFTFGAEVVAK	Unmodified	1310.6871	0.68705229	350;252	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3	0			1			19.48	19.48	2	0.00018926	14954	DP1145_13	130.98	73.834			235110000	927	252;350	880	1517	2206;2207;2208;2209	2206		4	9606
GVTFLFPIQAK	Unmodified	1219.6965	0.69649476	721	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				20.893	20.893	2	0.00060925	17633	DP1145_12	109.48	69.932			16612000	928	721	881	1518	2210;2211;2212	2210		3	9606
GVTHNIALLR	Unmodified	1092.6404	0.64037687	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.021	16.021	2	3.522E-13	9364	DP1145_13	156.35	82.092			966660000	929	123	882	1519;1520;1521;1522	2213;2214;2215;2216;2217;2218;2219	2217		7	9606
GVVDSEDLPLNISR	Unmodified	1512.7784	0.77838649	143;138	P08238;P07900	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	no	no	0	0	0	3	0			1			19.28	19.28	2	1.3989E-31	14480	DP1145_13	185.99	0			131250000	930	143;138	883	1523	2220;2221	2220		2	9606
GVVEVTHDLQK	Unmodified	1223.651	0.65100113	303	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	4	0				1		15.306	15.306	2	3.0587E-18	7882	DP1145_14	162.88	119.24			47836000	931	303	884	1524	2222	2222		1	9606
GVVMHTFGGYANSK	Oxidation (M)	1482.6925	0.69254837	543	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				2		15.206	15.206	2;3	1.4874999999999998E-102	7730	DP1145_14	229	196.27			83947000	932	543	885	1525;1526	2223;2224;2225	2224	416	3	9606
GVVQLFNAVQK	Unmodified	1201.6819	0.68190733	783	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	4	0				1		19.26	19.26	2	0.0012592	13963	DP1145_14	105.14	59.538			39180000	933	783	886	1527	2226	2226		1	9606
GWEEALENVIK	Unmodified	1286.6507	0.65066678	699	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					21.854	21.854	2	0.013714	16886	DP1145_11	87.476	36.672			2692700	934	699	887	1528	2227	2227		1	9606
GYAFIEFASFEDAK	Unmodified	1593.7351	0.73512469	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				21.819	21.819	2	0.00012838	18948	DP1145_12	144.17	99.15			3059300	935	199	888	1529	2228	2228		1	9606
GYFEYIEENK	Unmodified	1290.5768	0.57683314	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				18.987	18.987	2	0.00041605	14775	DP1145_12	112.41	80.54			4987100	936	409	889	1530	2229	2229		1	9606
GYFEYIEENKYSR	Unmodified	1696.7733	0.77330111	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				18.377	18.377	2	8.5868E-42	13720	DP1145_12	201.84	158.54			30703000	937	409	890	1531	2230	2230		0	9606
GYLDKLEPSK	Unmodified	1148.6077	0.60773933	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			16.577	16.577	2	4.1075E-05	10351	DP1145_13	128.28	70.051			77924000	938	217	891	1532	2231	2231		1	9606
GYLGPEQLPDCLK	Unmodified	1488.7283	0.72826518	262	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	2	0		1				19.103	19.103	2	0.0083372	14901	DP1145_12	86.189	45.693			7185900	939	262	892	1533	2232	2232		1	9606
GYLISGSSYAR	Unmodified	1172.5826	0.58258722	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				17.152	17.152	2	0.0026765	11782	DP1145_12	102.07	62.009			12709000	940	566	893	1534	2233	2233		1	9606
GYSFTTTAER	Unmodified	1131.5197	0.51965261	335;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	2.75	1.48	1	1	1		1	16.259	16.259	2	9.633E-36	8301	DP1145_11	186.3	146.23			574440000	941	335;389	894	1535;1536;1537;1538	2234;2235;2236;2237;2238;2239;2240	2234		7	9606
GYVKDVDDGLQAAEEVGYPVMIK	Oxidation (M)	2511.2203	0.22030605	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					20.32	20.32	3	0.0072807	14605	DP1145_11	60.8	40.627			49327000	942	441	895	1539	2241;2242	2242	314	2	9606
HAASTVQILGAEK	Unmodified	1323.7147	0.71466402	774	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3.33	0.471			2	1		15.212	15.212	2;3	2.9125E-43	8068	DP1145_13	196.02	147.42			29336000	943	774	896	1540;1541;1542	2243;2244;2245	2243		1	9606
HAPINSAQHLDNVDQTGPK	Unmodified	2040.9977	0.99771517	52	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	3	0			1			14.438	14.438	3	0.00087906	7036	DP1145_13	120.39	96.662			17009000	944	52	897	1543	2246	2246		1	9606
HASGGSTVHIHPQAAPVVCR	Unmodified	2080.0385	0.038474552	558	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	0	1					14.268	14.268	4	0.03889	5415	DP1145_11	46.131	21.593			2348900	945	558	898	1544	2247	2247		1	9606
HAVTEAEIQQLKR	Unmodified	1521.8263	0.82633974	648	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				15.068	15.068	3	2.1957E-05	8393	DP1145_12	138.2	111.48			12375000	946	648	899	1545	2248	2248		1	9606
HCAPSGTPTGPEILAAAVPPSSLK	Unmodified	2357.2049	0.20493076	585	Q8NDD1	C1orf131	Uncharacterized protein C1orf131	yes	yes	0	0	0	4	0				1		18.911	18.911	3	7.1333E-05	13487	DP1145_14	95.622	65.412			0	947	585	900	1546	2249	2249		1	9606
HDADGQATLLNLLLR	Unmodified	1648.8897	0.88966827	55	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	0	1					21.83	21.83	2	0.021907	16812	DP1145_11	82.171	60.178			0	948	55	901	1547	2250	2250		1	9606
HDLDLICR	Unmodified	1040.5073	0.50731378	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	4	0.816			1	1	1	16.357	16.357	2	1.0257E-61	9985	DP1145_13	208.67	160.75			1501999999.9999998	949	252;350;351	902	1548;1549;1550	2251;2252;2253;2254	2251		4	9606
HDSPDLAPNVTYSLPR	Unmodified	1780.8744	0.87441214	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3	0			1			17.978	17.978	2	0.0020465	12650	DP1145_13	124.48	90.599			88254000	950	665	903	1551	2255	2255		1	9606
HDVVFLITK	Unmodified	1070.6124	0.61243078	408	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					17.321	17.321	2	0.029732	10424	DP1145_11	79.713	30.29			11342000	951	408	904	1552	2256	2256		1	9606
HELQANCYEEVKDR	Unmodified	1789.8053	0.8053463	211	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	5	0					1	14.516	14.516	3	1.0465E-10	6279	DP1145_15	166.64	136.54			80002000	952	211	905	1553	2257	2257		1	9606
HEMLPEFYK	Oxidation (M)	1208.5536	0.55359527	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	1	0	2	0		1				16.575	16.575	2	9.6614E-05	10769	DP1145_12	123.98	96.729			36585000	953	566	906	1554	2258;2259	2258	426	2	9606
HEMLPEFYK	Unmodified	1192.5587	0.55868065	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				17.375	17.375	2	0.015605	12133	DP1145_12	90.777	54.22			13911000	954	566	906	1555	2260	2260		1	9606
HFLLEEDKPEEPTAHAFVSTLTR	Unmodified	2666.334	0.33403068	295	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	0	1					18.76	18.76	4	0.0025978	12380	DP1145_11	51.431	31.709			6672400	955	295	907	1556	2261	2261		1	9606
HFSVEGQLEFR	Unmodified	1347.6571	0.65714914	143;138	P08238;Q58FF7;Q58FG1;P07900;Q14568	HSP90AB1;HSP90AB3P;HSP90AA4P;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-alpha A4;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	no	no	0	0	0	3	0			1			17.878	17.878	3	0.002871	12421	DP1145_13	96.171	67.463			44276000	956	143;138	908	1557	2262;2263	2262		2	9606
HGDVITIIDR	Unmodified	1137.6142	0.6142217	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	4	0				1		16.759	16.759	2	2.0857E-12	10084	DP1145_14	153.05	116.66			112410000	957	278	909	1558	2264;2265	2264		2	9606
HGEEVTPEDVLSAAMYPDVFAHFK	Oxidation (M)	2704.2479	0.24791778	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.17	1.07	2	2	1	1		21.249	21.249	3;4	2.7815E-05	18114	DP1145_12	110.91	82.707			138740000	958	164	910	1559;1560;1561;1562;1563;1564	2266;2267;2268;2269;2270;2271;2272;2273	2268	141	7	9606
HGEEVTPEDVLSAAMYPDVFAHFK	Unmodified	2688.253	0.25300316	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.67	0.471		1	2			22.164	22.164	3;4	4.3856E-10	18650	DP1145_13	153.65	137.06			54322000	959	164	910	1565;1566;1567	2274;2275;2276;2277;2278;2279;2280;2281	2280		8	9606
HGNALWLNER	Unmodified	1208.6051	0.60505399	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		16.426	16.426	2	6.9395E-11	8655	DP1145_11	168.83	132.43			1017199999.9999999	960	123	911	1568;1569;1570	2282;2283;2284;2285;2286	2282		5	9606
HGSLGFLPR	Unmodified	982.53485	0.53484916	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1.5	0.5	1	1				16.671	16.671	2	3.8162E-06	8887	DP1145_11	129.68	74.288			100510000	961	257	912	1571;1572	2287;2288	2287		1	9606
HGVDHQVISVTFEK	Unmodified	1594.8104	0.81035532	488	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	2	0		1				16.179	16.179	3	0.041889	10233	DP1145_12	74.649	35.068			11996000	962	488	913	1573	2289	2289		0	9606
HGYIGEFEIIDDHR	Unmodified	1699.7954	0.79543354	355	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					2	18.065	18.065	2;3	5.396E-281	11533	DP1145_15	292.33	236.52			143370000	963	355	914	1574;1575	2290;2291;2292;2293	2292		4	9606
HHLQPENPGPGGAAPSLEQNR	Unmodified	2205.0675	0.067526074	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0.816	2	2	2			15.104	15.104	2;3;4	6.8572E-20	8589	DP1145_12	171	144.04			1230500000	964	480	915	1576;1577;1578;1579;1580;1581	2294;2295;2296;2297;2298;2299;2300;2301;2302;2303	2298		10	9606
HIAEVSQEVTR	Unmodified	1267.6521	0.65206377	346	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	1.5	0.5	1	1				14.318	14.318	3	0.002914	7408	DP1145_12	96.015	35.324			4401800	965	346	916	1582;1583	2304;2305	2305		2	9606
HIANYISGIQTIGHR	Unmodified	1678.8903	0.89033698	498	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					17.167	17.167	3	9.9662E-05	9742	DP1145_11	141.65	100.07			23195000	966	498	917	1584	2306	2306		0	9606
HIDFSLR	Unmodified	886.4661	0.4661009	286	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	16.697	16.697	2	3.7689E-47	9528	DP1145_15	190.71	57.906			390790000	967	286	918	1585	2307	2307		1	9606
HIEIQVLGDK	Unmodified	1150.6346	0.63462279	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			16.733	16.733	2	3.7543E-22	10415	DP1145_13	173.24	115.95			1172700000	968	123	919	1586;1587;1588	2308;2309;2310;2311;2312	2311		5	9606
HIEIQVLGDKHGNALWLNER	Unmodified	2341.2291	0.22911209	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.279	18.279	4	0.0014282	13046	DP1145_13	87.24	57.05			48644000	969	123	920	1589	2313;2314	2314		2	9606
HIHITQATETTTTR	Unmodified	1608.822	0.82198264	478	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	3.5	0.5			1	1		14.062	14.062	3	3.4437E-09	6442	DP1145_13	164.92	116.88			22441000	970	478	921	1590;1591	2315;2316	2315		1	9606
HIMGQNVADYMR	Oxidation (M)	1449.6493	0.64930335	283	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	4	0				1		16.154	16.154	3	0.0047354	9198	DP1145_14	84.188	53.983			24861000	971	283	922	1592	2317;2318	2317	224	2	9606
HKLDVTSVEDYK	Unmodified	1432.7198	0.71980898	292	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	3	0			1			15.642	15.642	3	0.0023234	8813	DP1145_13	76.357	46.552			27289000	972	292	923	1593	2319	2319		1	9606
HKNMSVHLSPCFR	Oxidation (M)	1627.7711	0.77114982	362	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	1	5	0					1	14.432	14.432	4	0.0018272	6102	DP1145_15	92.781	71.231			11061000	973	362	924	1594	2320	2320	265	1	9606
HKPGSTPEPIAAEVR	Unmodified	1587.8369	0.83690442	305	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	1	1	0	1					14.268	14.268	3	0.01072	5399	DP1145_11	107.11	52.846			1657900	974	305	925	1595	2321	2321		0	9606
HLADHGQLSGIQR	Unmodified	1430.7379	0.73785908	72	O60783	MRPS14	28S ribosomal protein S14, mitochondrial	yes	yes	0	0	0	5	0					1	14.441	14.441	3	0.0085062	6042	DP1145_15	82.705	22.865			0	975	72	926	1596	2322	2322		1	9606
HLCGDTNYAWPTAEIAVMGAK	Oxidation (M)	2320.0616	0.061637339	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			18.879	18.879	2	5.2052E-63	13855	DP1145_13	205.33	176.12			80295000	976	124	927	1597	2323;2324	2323	90	2	9606
HLCGDTNYAWPTAEIAVMGAK	Unmodified	2304.0667	0.066722717	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.881	19.881	2	0.0097745	15539	DP1145_13	113.25	85.047			86379000	977	124	927	1598	2325	2325		1	9606
HLEINPDHPIVETLR	Unmodified	1781.9424	0.94243213	143	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2.5	0.5		1	1			17.301	17.301	3	0.00062429	11469	DP1145_13	139.64	90.812			190850000	978	143	928	1599;1600	2326;2327	2327		2	9606
HLIFVLNK	Unmodified	982.59639	0.59638679	461	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				17.716	17.716	2	6.0729E-08	12657	DP1145_12	137.83	80.729			6725900	979	461	929	1601	2328	2328		0	9606
HLLIGVSSDR	Unmodified	1095.6037	0.60365701	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		15.805	15.805	2	1.7069E-06	8603	DP1145_14	136.27	92.499			57043000	980	249	930	1602	2329;2330	2329		2	9606
HLLTLKDDAVK	Unmodified	1251.7187	0.71868677	720	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			15.257	15.257	3	8.0667E-06	8204	DP1145_13	143.5	104.93			13741000	981	720	931	1603	2331	2331		0	9606
HLLTLKDDAVKK	Unmodified	1379.8136	0.81364979	720	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	2	3	0			1			14.438	14.438	3	0.020986	6877	DP1145_13	106.67	79.114			15567000	982	720	932	1604	2332	2332		0	9606
HLPSTEPDPHVVR	Unmodified	1482.7579	0.75792582	670	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				14.468	14.468	3	0.0013182	7716	DP1145_12	83.617	44.743			10436000	983	670	933	1605	2333;2334	2334		2	9606
HLVDEPQNLIK	Unmodified	1304.7089	0.70885036	12	CON__P02769			yes	yes	0	0	0	2.67	1.25	1		1	1		16.634	16.634	2	8.2614E-32	10311	DP1145_13	189.18	126.6		+	526280000	984	12	934	1606;1607;1608	2335;2336;2337	2336		2	9606
HLVFPLLEFLSVK	Unmodified	1540.9017	0.90173651	334	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	3	0			1			23.698	23.698	2	1.5737E-10	20888	DP1145_13	158.47	124.93			6827400	985	334	935	1609	2338;2339;2340	2340		3	9606
HMFHVAWVDPEDPYK	Oxidation (M)	1885.8458	0.84575455	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.26	18.26	3	0.00042229	11604	DP1145_11	109.95	89.83			117810000	986	441	936	1610	2341;2342;2343	2341	319	3	9606
HMFHVAWVDPEDPYK	Unmodified	1869.8508	0.85083993	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.963	18.963	3	0.0017972	12665	DP1145_11	147.18	104			36185000	987	441	936	1611	2344	2344		0	9606
HMFHVAWVDPEDPYKGYR	Oxidation (M)	2262.0317	0.03165784	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					18.061	18.061	3;4	0.00049893	11384	DP1145_11	138.28	125.3			80008000	988	441	937	1612;1613	2345;2346;2347	2347	319	3	9606
HMFHVAWVDPEDPYKGYR	Unmodified	2246.0367	0.036743217	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.906	18.906	4	0.0012004	12472	DP1145_11	124.16	104.29			50134000	989	441	937	1614	2348	2348		1	9606
HMIMANPQMQQLMER	2 Oxidation (M)	1888.8416	0.84161392	723	Q9NRR5	UBQLN4	Ubiquilin-4	yes	yes	0	2	0	4	0				1		24.795	24.795	2	0.01035	21833	DP1145_14	75.652	16.978			2524600	990	723	938	1615	2349	2349	520;521	1	9606
HNFCFMEMNTR	2 Oxidation (M)	1517.585	0.58498853	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2	1	1		1			15.359	15.359	3	0.012434	8356	DP1145_13	68.515	48.838			289540000	991	647	939	1616;1617	2350;2351;2352	2352	474;475	2	9606
HNFCFMEMNTR	Oxidation (M)	1501.5901	0.59007391	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			2			16.577	16.577	2;3	0.024022	10399	DP1145_13	108.47	104.58			214390000	992	647	939	1618;1619	2353;2354	2354	474;475	1	9606
HNFCFMEMNTR	Unmodified	1485.5952	0.59515929	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.878	17.878	3	0.005649	12526	DP1145_13	89.266	60.363			161810000	993	647	939	1620	2355	2355		1	9606
HPAKPDPSGECNPDLR	Unmodified	1788.8213	0.82133071	504	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	3.33	0.471			2	1		13.558	13.558	3;4	2.6587000000000003E-33	5671	DP1145_13	191.63	160.69			22310000	994	504	940	1621;1622;1623	2356;2357;2358;2359	2356		4	9606
HPELNISEEGITK	Unmodified	1465.7413	0.7412727	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2.5	0.5		1	1			16.476	16.476	2	2.594E-42	10066	DP1145_13	196.16	152.86			125240000	995	189	941	1624;1625	2360;2361;2362	2362		3	9606
HPGSFDVVHVK	Unmodified	1220.6302	0.63020611	367	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	4	0				1		14.987	14.987	3	2.6163E-11	7366	DP1145_14	155	118.32			66196000	996	367	942	1626	2363	2363		1	9606
HPHDIIDDINSGAVECPAS	Unmodified	2045.9113	0.91126793	229	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	18.489	18.489	3	0.0033823	12102	DP1145_15	145.86	123.7			61976000	997	229	943	1627	2364	2364		0	9606
HPNIVSLQDVLMQDSR	Oxidation (M)	1866.9258	0.92579578	130	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	1	0	4	0				1		19.188	19.188	3	0.0046273	13992	DP1145_14	81.656	45.463			33133000	998	130	944	1628	2365	2365	93	1	9606
HPSKPDPSGECNPDLR	Unmodified	1804.8162	0.81624534	429	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	1	3.33	0.471			2	1		13.557	13.557	3;4	0.00077999	5542	DP1145_13	135.47	111.37			30891000	999	429	945	1629;1630;1631	2366;2367;2368;2369;2370	2366		5	9606
HPYFYAPELLYYANK	Unmodified	1887.9196	0.91957142	12	CON__P02769			yes	yes	0	0	0	2	1	1		1			20.428	20.428	2;3	2.6948000000000002E-143	16145	DP1145_13	249.83	203.1		+	14663000	1000	12	946	1632;1633	2371;2372	2372		1	9606
HQAFEAELHANADR	Unmodified	1607.7441	0.74406667	460	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	0	1					15.063	15.063	3	0.022032	6402	DP1145_11	81.632	60.572			5382000	1001	460	947	1634	2373	2373		0	9606
HQALQAEIAGHEPR	Unmodified	1555.7855	0.78553755	460	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	0	1					15.046	15.046	3	0.010517	6441	DP1145_11	70.26	46.034			0	1002	460	948	1635	2374	2374		1	9606
HQGLPQEVLNENLLR	Unmodified	1758.9377	0.9376811	7	CON__P02662			yes	yes	0	0	0	2.75	1.3	1	1		2		18.764	18.764	2;3	0.0013728	13416	DP1145_14	90.476	33.877		+	364800000	1003	7	949	1636;1637;1638;1639	2375;2376;2377;2378;2379	2379		4	
HQSFVLVGETGSGK	Unmodified	1444.731	0.73104237	51	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	0	1					16.126	16.126	3	0.0054774	8051	DP1145_11	74.966	49.952			11068000	1004	51	950	1640	2380	2380		1	9606
HRDTGILDSIGR	Unmodified	1338.7004	0.70041094	111	P02686	MBP	Myelin basic protein	yes	yes	0	0	1	2.5	1.5	1			1		16.143	16.143	3	5.0635E-07	8066	DP1145_11	145.81	87.676			76943000	1005	111	951	1641;1642	2381;2382	2381		2	9606
HSAELIAMEKR	Oxidation (M)	1299.6605	0.66051996	66	O60293	ZFC3H1	Zinc finger C3H1 domain-containing protein	yes	yes	0	1	1	5	0					1	26.212	26.212	2	0.022241	22844	DP1145_15	79.474	51.702			1728500	1006	66	952	1643	2383	2383	48	1	9606
HSGNITFDEIVNIAR	Unmodified	1684.8533	0.85328277	229	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					2	19.791	19.791	2;3	3.9574E-15	14303	DP1145_15	179.6	157.86			102600000	1007	229	953	1644;1645	2384;2385	2385		2	9606
HSGPNSADSANDGFVR	Unmodified	1629.7132	0.71316047	313	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3	0			1			14.339	14.339	3	0.00089457	6895	DP1145_13	122.96	71.599			28327000	1008	313	954	1646	2386	2386		1	9606
HSQAVEELAEQLEQTKR	Unmodified	1995.0021	0.0021318501	245	P35579	MYH9	Myosin-9	yes	yes	0	0	1	2	0		1				18.076	18.076	3	0.012292	13280	DP1145_12	143.99	118.17			13157000	1009	245	955	1647	2387	2387		0	9606
HSQFIGYPITLFVEK	Unmodified	1777.9403	0.94030686	138	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	3	0			1			20.831	20.831	2	0.0025436	16880	DP1145_13	102.73	55.776			9039500	1010	138	956	1648	2388	2388		1	9606
HSQFLGYPITLYLEK	Unmodified	1807.9509	0.95087155	519	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	0	3	0			2			20.499	20.499	2;3	4.0188E-15	16332	DP1145_13	171.26	0			46251000	1011	519	957	1649;1650	2389;2390;2391;2392	2389		4	9606
HTGPITCLQFNPK	Unmodified	1511.7555	0.75548298	543	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		16.859	16.859	3	0.0083712	10325	DP1145_14	125.28	94.241			84901000	1012	543	958	1651	2393	2393		0	9606
HTGPNSPDTANDGFVR	Unmodified	1683.7601	0.76011066	236;327	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	3.75	0.829			2	1	1	14.841	14.841	2;3	0	7495	DP1145_13	325.74	284.58			503080000	1013	236;327	959	1652;1653;1654;1655	2394;2395;2396;2397;2398;2399;2400	2397		7	9606
HTPLVEFEEEESDKR	Unmodified	1843.8588	0.85882166	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.5	1.12	1	1	1	1		16.645	16.645	3	0	10296	DP1145_13	300.33	252.19			793800000	1014	647	960	1656;1657;1658;1659	2401;2402;2403;2404;2405;2406;2407;2408;2409	2407		9	9606
HTPLVEFEEEESDKRESE	Unmodified	2188.976	0.97603626	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	3	1.29	1	1	2	1	1	16.858	16.858	2;3	4.4437E-292	10851	DP1145_13	296.28	258.66			2954699999.9999995	1015	647	961	1660;1661;1662;1663;1664;1665	2410;2411;2412;2413;2414;2415;2416;2417;2418;2419;2420;2421	2417		11	9606
HVAAGTQQPYTDGVR	Unmodified	1598.7801	0.78011783	179	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	1	0	1					14.268	14.268	3	0.00031272	5401	DP1145_11	113.52	48.696			3479800	1016	179	962	1666	2422	2422		1	9606
HVDYVADQIVTK	Unmodified	1386.7143	0.71432967	163	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	0		1				16.128	16.128	2	0.036207	10149	DP1145_12	89.548	53.64			8280700	1017	163	963	1667	2423	2423		0	9606
HVEVQVFGDHHGNAVYLFER	Unmodified	2352.14	0.13996274	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.4	0.8	1	1	3			18.355	18.355	2;3;4	5.2997E-35	13165	DP1145_13	208.85	185.02			1884599999.9999998	1018	647	964	1668;1669;1670;1671;1672	2424;2425;2426;2427;2428	2428		5	9606
HVFLTGPPGVGK	Unmodified	1207.6713	0.67134264	667	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	5	0					1	16.374	16.374	2	0.00018266	9055	DP1145_15	112.11	80.236			11625000	1019	667	965	1673	2429	2429		1	9606
HVLHVQLNRPNK	Unmodified	1453.8266	0.82661451	440	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	1	4	0				1		14.213	14.213	3	2.0133E-07	6165	DP1145_14	147.4	105.92			11528000	1020	440	966	1674	2430;2431	2431		2	9606
HVVQSISTQQEKETIAK	Unmodified	1925.0218	0.02180466	212	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	1	5	0					1	14.432	14.432	3	0.0017657	6044	DP1145_15	147.75	120.23			15819000	1021	212	967	1675	2432	2432		1	9606
HWGGNVLGPK	Unmodified	1063.5563	0.55631289	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		15.604	15.604	2	0.00017202	8315	DP1145_14	114.5	78.116			129180000	1022	366	968	1676	2433;2434	2433		2	9606
HWILPQDYDHAQAEAR	Unmodified	1948.918	0.91800829	494	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	4	0				1		17.143	17.143	3	0.01262	10761	DP1145_14	118.71	93.523			26751000	1023	494	969	1677	2435	2435		0	9606
HWPFMVVNDAGRPK	Oxidation (M)	1668.8195	0.81948022	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			16.978	16.978	3	0.0022161	10982	DP1145_13	91.202	61.069			111690000	1024	161	970	1678	2436;2437	2436	131	2	9606
HWPFMVVNDAGRPK	Unmodified	1652.8246	0.8245656	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			17.778	17.778	3	0.0048578	12371	DP1145_13	81.239	63.282			100330000	1025	161	970	1679	2438	2438		1	9606
HWPFQVINDGDKPK	Unmodified	1679.842	0.8419898	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3.33	0.471			2	1		17.511	17.511	2;3	9.7166E-33	11653	DP1145_13	180.3	127.8			748310000	1026	156	971	1680;1681;1682	2439;2440;2441;2442;2443;2444;2445;2446	2439		8	9606
HYFIEVNSR	Unmodified	1163.5724	0.57235688	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.232	16.232	2	9.2508E-37	8114	DP1145_11	188.98	130.37			721750000	1027	164	972	1683;1684;1685;1686	2447;2448;2449;2450	2447		4	9606
IAAGEKIPLSQEEITLQGHAFEAR	Unmodified	2607.3657	0.36566515	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.33	0.943	1		2			18.461	18.461	3;4	3.4413E-86	13293	DP1145_13	212.55	190.56			395440000	1028	647	973	1687;1688;1689	2451;2452;2453	2452		3	9606
IAGYVTHLMK	Oxidation (M)	1147.606	0.6059652	146	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	5	0					1	15.068	15.068	2	0.027224	6987	DP1145_15	108.74	65.301			0	1029	146	974	1690	2454	2454	118	1	9606
IAIPGLAGAGNSVLLVSNLNPER	Unmodified	2274.2696	0.26957993	222	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	3	0			1			22.197	22.197	2	0.0015852	18668	DP1145_13	103.39	81.838			0	1030	222	975	1691	2455	2455		1	9606
IAIYELLFK	Unmodified	1108.6532	0.65323296	288	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					1	22.531	22.531	2	1.4893E-10	17935	DP1145_15	148.04	109.22			73586000	1031	288	976	1692	2456	2456		1	9606
IALTDNALIAR	Unmodified	1169.6768	0.67682195	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		18.46	18.46	2	3.3294E-07	12793	DP1145_14	140.14	66.523			343500000	1032	195	977	1693	2457;2458	2457		2	9606
IALYGLGSIPDER	Unmodified	1402.7456	0.7456298	301	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	3	0			1			19.982	19.982	2	0.0025328	15686	DP1145_13	97.813	53.61			48965000	1033	301	978	1694	2459	2459		1	9606
IANPVEGSTDR	Unmodified	1157.5677	0.56766543	495	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				2		14.972	14.972	2	1.6474E-05	7250	DP1145_14	144.77	105.47			0	1034	495	979	1695;1696	2460;2461	2460		2	9606
IAPYVAHNFSK	Unmodified	1245.6506	0.6506072	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		15.373	15.373	2;3	2.6257E-05	8961	DP1145_12	161.51	119.32			1078400000	1035	164	980	1697;1698;1699;1700;1701	2462;2463;2464;2465;2466;2467;2468;2469;2470;2471	2464		10	9606
IAQLEEQLDNETK	Unmodified	1529.7573	0.7573167	245	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1				17.429	17.429	2	1.2119E-05	12185	DP1145_12	149.33	110.58			4453200	1036	245	981	1702	2472	2472		0	9606
IAQPGDHVSVTGIFLPILR	Unmodified	2032.1469	0.14694559	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			21.378	21.378	3	0.014044	17585	DP1145_13	73.11	39.341			57230000	1037	240	982	1703	2473	2473		1	9606
IASSIVAQTAGIPTLPWSGSGLR	Unmodified	2281.243	0.24303082	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				21.623	21.623	2;3	2.1091999999999998E-212	16471	DP1145_11	354.39	326.42			142400000	1038	441	983	1704;1705;1706;1707	2474;2475;2476;2477;2478;2479;2480;2481	2478		8	9606
IATLASGLEVGK	Unmodified	1157.6656	0.66558856	173	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	0	3	2	1				1	17.893	17.893	2	4.5391E-23	11207	DP1145_15	174.86	101.2			19446000	1039	173	984	1708;1709	2482;2483;2484	2484		3	9606
IAWDDEETR	Unmodified	1133.4989	0.49891717	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1	0	1					16.867	16.867	2	0.032231	9451	DP1145_11	78.113	40.385			41141000	1040	123	985	1710	2485	2485		1	9606
IAWDDEETRDGFR	Unmodified	1608.7168	0.71684887	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	1	0	1					17.661	17.661	3	0.038303	10461	DP1145_11	72.652	52.813			167530000	1041	123	986	1711	2486	2486		0	9606
ICCDLDVLASK	Unmodified	1292.6105	0.61045823	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.279	18.279	2	0.00055665	13132	DP1145_13	109.83	61.87			374820000	1042	124	987	1712	2487	2487		1	9606
ICGDIHGQYYDLLR	Unmodified	1721.8195	0.8195398	350;252	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.67	0.471			1	2		18.633	18.633	2;3	0.00039167	13392	DP1145_13	109.16	90.693			3494899999.9999995	1043	252;350	988	1713;1714;1715	2488;2489;2490;2491	2488		4	9606
IDDFPNELEK	Unmodified	1218.5768	0.57683314	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				17.976	17.976	2	0.01509	13285	DP1145_12	90.601	46.484			36703000	1044	724	989	1716	2492	2492		1	9606
IDEPSTPYHSMMGDDEDACSDTEATEAMAPDILAR	3 Oxidation (M)	3888.5594	0.55942939	265	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	3	0	4	0				1		18.46	18.46	3	2.0314E-07	12993	DP1145_14	60.527	48.265			39715000	1045	265	990	1717	2493	2493	198;199;200	1	9606
IDFYFDENPYFENK	Unmodified	1839.7992	0.79918151	155	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				1		21.731	21.731	2	3.4121E-14	17530	DP1145_14	163.46	118.6			56040000	1046	155	991	1718	2494	2494		0	9606
IDIDYQK	Unmodified	893.44945	0.44944778	452	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2	0		1				16.074	16.074	2	0.01384	10031	DP1145_12	100.07	1.0697			31924000	1047	452	992	1719	2495;2496	2496		2	9606
IDIIPNPQER	Unmodified	1193.6404	0.64043645	143	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2	0.816	1	1	1			17.887	17.887	2	0.013686	12530	DP1145_13	92.051	60.748			153590000	1048	143	993	1720;1721;1722	2497;2498;2499;2500	2500		4	9606
IDISPVLLQK	Unmodified	1124.6805	0.68051035	301	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	3	0			1			19.28	19.28	2	0.0023501	14459	DP1145_13	106.68	66.682			51633000	1049	301	994	1723	2501	2501		1	9606
IDLAVLLGK	Unmodified	940.59572	0.59571809	470	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	2	0		1				21.349	21.349	2	0.021373	18232	DP1145_12	85.064	28.343			5698100	1050	470	995	1724	2502	2502		1	9606
IDPLALVQAIER	Unmodified	1336.7715	0.77145062	476	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1				22.934	22.934	2	0.0068056	20486	DP1145_12	91.549	49.359			1388200	1051	476	996	1725	2503	2503		1	9606
IDSWENAEDFLEK	Unmodified	1594.7151	0.71511753	461	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				20.732	20.732	2	0.00056144	17432	DP1145_12	113.69	78.035			6926100	1052	461	997	1726	2504	2504		1	9606
IDTGWLDR	Unmodified	974.48214	0.48214489	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.66	18.66	2	0.025363	12008	DP1145_11	93.374	22.461			542810000	1053	441	998	1727	2505	2505		1	9606
IEDFLER	Unmodified	920.46035	0.46034682	286	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	17.892	17.892	2	0.0034515	11212	DP1145_15	111.04	41.603			355920000	1054	286	999	1728	2506	2506		1	9606
IEDLSQQAQLAAAEK	Unmodified	1613.8261	0.82606496	29	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	0	4	0				1		17.459	17.459	2	0.0070079	11402	DP1145_14	86.911	48.157			128640000	1055	29	1000	1729	2507	2507		1	9606
IEDVTPIPSDSTR	Unmodified	1428.7096	0.70963822	358	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	5	0					1	16.984	16.984	2	1.2368E-104	9912	DP1145_15	243.53	198.37			0	1056	358	1001	1730	2508	2508		1	9606
IEEVPELPLVVEDK	Unmodified	1607.8658	0.86580451	251	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			20.524	20.524	2	0.011712	16292	DP1145_13	101.89	67.134			0	1057	251	1002	1731	2509	2509		1	9606
IEFVLNLPKTVTGK	Unmodified	1557.913	0.91302948	426	Q68CK6;Q08AH3	ACSM2B;ACSM2A	Acyl-coenzyme A synthetase ACSM2B, mitochondrial;Acyl-coenzyme A synthetase ACSM2A, mitochondrial	yes	no	0	0	1	2	0		1				15.208	15.208	3	0.0065616	8645	DP1145_12	73.877	21.938			0	1058	426	1003	1732	2510	2510		1	9606
IEGLQNLVNLR	Unmodified	1267.7248	0.72483478	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	3.5	0.5			1	1		20.029	20.029	2	4.4197E-25	15209	DP1145_14	181.55	117.73			414030000	1059	499	1004	1733;1734	2511;2512;2513;2514	2513		4	9606
IEIHEQEAILHNFSSTNPTQVNGSVIDEPVR	Unmodified	3472.7223	0.72227518	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	1	1		1			19.369	19.369	4	6.8695E-07	14771	DP1145_13	67.463	45.064			134280000	1060	278	1005	1735;1736	2515;2516;2517	2517		3	9606
IEISELNR	Unmodified	972.52401	0.52400971	13;21	P04264;CON__P04264;P35908;CON__P35908v2;CON__P35908	KRT1;KRT2	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	2.75	1.48	1	1	1		1	16.873	16.873	2	1.5858E-15	10844	DP1145_13	154.35	19.913		+	1649399999.9999998	1061	13;21	1006	1737;1738;1739;1740	2518;2519;2520;2521	2520		3	9606
IELHGKPIEVEHSVPK	Unmodified	1810.9941	0.99413335	36	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	1	3	0			1			15.038	15.038	4	0.029042	7825	DP1145_13	50.024	25.971			22854000	1062	36	1007	1741	2522	2522		1	9606
IEVIEIMTDR	Unmodified	1217.6326	0.63257388	151	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		19.961	19.961	2	0.018894	15106	DP1145_14	86.67	44.072			27272000	1063	151	1008	1742	2523	2523		1	9606
IEWLESHQDADIEDFKAK	Unmodified	2173.0328	0.032763276	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			18.379	18.379	3	0.0015967	13104	DP1145_13	110.84	79.732			111450000	1064	160	1009	1743	2524	2524		1	9606
IFAQYMVPHNLETTERMK	2 Oxidation (M)	2239.0766	0.076559122	726	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	2	1	2	0		1				17.176	17.176	4	0.040004	11649	DP1145_12	42.191	18.296			3881700	1065	726	1010	1744	2525	2525	523;524	0	9606
IFCCHGGLSPDLQSMEQIR	Oxidation (M)	2263.0184	0.018392316	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	0	3.5	0.5			1	1		17.569	17.569	3	1.3717E-07	11376	DP1145_14	155.63	140.21			1387400000	1066	252;350;351	1011	1745;1746	2526;2527;2528;2529;2530	2528	190	5	9606
IFCCHGGLSPDLQSMEQIR	Unmodified	2247.0235	0.023477694	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.33	0.471			2	1		19.006	19.006	2;3	0.002029	14203	DP1145_13	98.227	79.443			915510000	1067	252;350;351	1011	1747;1748;1749	2531;2532;2533;2534	2531		4	9606
IFCCHGGLSPDLQSMEQIRR	Oxidation (M)	2419.1195	0.11950334	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	1	3	0			1			16.677	16.677	4	0.032625	10610	DP1145_13	42.382	23.844			531110000	1068	252;350;351	1012	1750	2535	2535	190	1	9606
IFCCHGGLSPDLQSMEQIRR	Unmodified	2403.1246	0.12458872	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3	0			1			18.078	18.078	4	0.0028284	12649	DP1145_13	90.754	72.738			379990000	1069	252;350;351	1012	1751	2536	2536		1	9606
IFDEILVNAADNK	Unmodified	1460.7511	0.75110911	163	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	yes	no	0	0	0	2	0		1				19.98	19.98	2	3.7669E-07	16120	DP1145_12	148.18	67.495			3156200	1070	163	1013	1752	2537	2537		1	9606
IFGYPVGIVGNNGVLFSESAK	Unmodified	2167.1314	0.13135511	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.75	1.3	1	1		2		21.968	21.968	2;3	5.4298E-39	18031	DP1145_14	204.18	178.95			47406000	1071	710	1014	1753;1754;1755;1756	2538;2539;2540;2541;2542	2541		4	9606
IFIGTFK	Unmodified	824.47963	0.47962569	178	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	4	0				1		18.36	18.36	2	0.011448	12545	DP1145_14	101.21	51.187			52248000	1072	178	1015	1757	2543	2543		1	9606
IFTIESTR	Unmodified	965.5182	0.51819605	471	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					17.105	17.105	2	4.9039E-15	9661	DP1145_11	163.34	102.54			0	1073	471	1016	1758	2544	2544		1	9606
IFTSIGEDYDER	Unmodified	1443.6518	0.65178899	241	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		18.365	18.365	2	0.03092	12656	DP1145_14	94.297	55.993			0	1074	241	1017	1759	2545	2545		1	9606
IFVGGIKEDTEEYNLR	Unmodified	1881.9472	0.94724273	309	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	1	4	0				1		18.16	18.16	3	0.014439	12383	DP1145_14	130.72	66.067			62613000	1075	309	1018	1760	2546	2546		0	9606
IGAEVYHNLK	Unmodified	1142.6084	0.60840804	133	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	4	0				1		15.093	15.093	2	1.0026E-05	7449	DP1145_14	122.19	55.62			41437000	1076	133	1019	1761	2547	2547		1	9606
IGAVLFTVVTPMMNPFIYSLR	2 Oxidation (M)	2400.2585	0.25854623	590	Q8NGQ3	OR1S2	Olfactory receptor 1S2	yes	yes	0	2	0	2	0		1				20.893	20.893	3	0.040658	17644	DP1145_12	40.349	14.275			8232700	1077	590	1020	1762	2548	2548	440;441	1	9606
IGEEEIQKPEEK	Unmodified	1427.7144	0.71438925	500	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	3	0			1			14.434	14.434	3	3.4792E-55	6946	DP1145_13	197.73	147.58			31218000	1078	500	1021	1763	2549	2549		1	9606
IGEEQSPEDAEDGPPELLFIHGGHTAK	Unmodified	2872.3515	0.35153123	429	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	3	0			1			18.579	18.579	4	0.00011693	13518	DP1145_13	81.525	63.878			71097000	1079	429	1022	1764	2550	2550		0	9606
IGEGTYGVVYK	Unmodified	1184.6077	0.60773933	130;214	P06493;P24941;Q00526	CDK1;CDK2;CDK3	Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	no	no	0	0	0	4	0				1		17.06	17.06	2	0.00010574	10656	DP1145_14	113.66	29.66			223940000	1080	130;214	1023	1765	2551	2551		1	9606
IGGIGTVPVGR	Unmodified	1024.6029	0.60292873	392	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3.25	1.48	1		1	1	1	16.831	16.831	2	6.6749E-33	10767	DP1145_13	185.55	134.85			685380000	1081	392	1024	1766;1767;1768;1769	2552;2553;2554;2555;2556;2557	2553		6	9606
IGLAEEIR	Unmodified	899.50763	0.50763136	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.067	17.067	2	0.026736	9765	DP1145_11	91.9	18.284			1166100000	1082	441	1025	1770	2558	2558		1	9606
IGPLGLSPK	Unmodified	880.5382	0.53820321	229	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.276	17.276	2	4.4106E-07	10276	DP1145_15	134.81	52.506			174500000	1083	229	1026	1771	2559	2559		1	9606
IGPYQPNVPVGIDYVIPK	Unmodified	1968.072	0.072049316	274	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				20.893	20.893	2	0.0033638	17643	DP1145_12	111.72	81.659			11554000	1084	274	1027	1772	2560	2560		1	9606
IGQGYLIK	Unmodified	890.52255	0.52255314	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2.5	1.5	1			1		16.663	16.663	2	1.2717E-08	9026	DP1145_11	148.21	44.922			129220000	1085	257	1028	1773;1774	2561;2562	2561		0	9606
IGQTKPVVVYR	Unmodified	1258.7398	0.73975656	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	3	1.58	1	1		1	1	14.729	14.729	3	0.0077169	6511	DP1145_15	85.533	51.789			98544000	1086	724	1029	1775;1776;1777;1778	2563;2564;2565;2566	2566		3	9606
IGRIEDVTPIPSDSTR	Unmodified	1754.9163	0.91627696	358	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	17.17	17.17	3	0.0032255	10183	DP1145_15	93.424	56.411			14433000	1087	358	1030	1779	2567	2567		1	9606
IGSFGPGEDLLYLR	Unmodified	1535.7984	0.79839365	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.332	21.332	2	0.016086	16085	DP1145_11	141.1	102.34			0	1088	43	1031	1780	2568	2568		1	9606
IGSFGPQEDLLFLR	Unmodified	1590.8406	0.84059282	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.25	0.433	3	1				21.915	21.915	2	2.4828E-42	18993	DP1145_12	199.33	127.98			815180000	1089	441	1032	1781;1782;1783;1784	2569;2570;2571;2572;2573;2574;2575;2576;2577	2576		9	9606
IHFPLATYAPVISAEK	Unmodified	1755.956	0.95595693	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	2.57	1.18	2	1	2	2		19.743	19.743	2;3	4.1016E-10	14815	DP1145_13	163.45	128.67			1767399999.9999998	1090	393;547;662	1033	1785;1786;1787;1788;1789;1790;1791	2578;2579;2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593	2588		16	9606
IHNANPELTDGQIQAMLR	Oxidation (M)	2036.0109	0.010922397	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1.67	0.943	2		1			17.073	17.073	2;3	1.383E-63	9534	DP1145_11	219.84	170.56			395470000	1091	441	1034	1792;1793;1794	2594;2595;2596;2597;2598	2597	320	4	9606
IHNANPELTDGQIQAMLR	Unmodified	2020.016	0.016007775	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1	1		1			18.627	18.627	2;3	0.011846	13464	DP1145_13	124.68	78.554			14578000	1092	441	1034	1795;1796	2599;2600	2600		1	9606
IHPTSVISGYR	Unmodified	1228.6564	0.65642086	194	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			15.741	15.741	3	6.3454E-11	8873	DP1145_13	125.23	93.629			29994000	1093	194	1035	1797	2601	2601		1	9606
IIAATIENAQPILQIDNAR	Unmodified	2063.1375	0.13750312	16	CON__P08779;P08779	KRT16	Keratin, type I cytoskeletal 16	yes	no	0	0	0	1	0	1					20.125	20.125	3	0.0001638	14311	DP1145_11	142.26	115.84		+	9053300	1094	16	1036	1798	2602	2602		1	9606
IIANALSSEPACLAEIEEDKAR	Unmodified	2399.2002	0.20023931	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					19.16	19.16	3	0.022356	13058	DP1145_11	56.247	24.622			23828000	1095	400	1037	1799	2603	2603		1	9606
IIDFLSALEGFK	Unmodified	1351.7388	0.73875351	314	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	3	0			1			23.975	23.975	2	0.028261	21286	DP1145_13	72.096	32.473			5226700	1096	314	1038	1800	2604	2604		1	9606
IIDPLPPIDHSEIDYPPFEK	Unmodified	2334.1784	0.17836488	569	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				20.649	20.649	3	0.0011107	17234	DP1145_12	115.53	81.83			5844100	1097	569	1039	1801	2605;2606;2607	2607		3	9606
IIDVVYNASNNELVR	Unmodified	1717.8999	0.89989861	354	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	4	0				2		19.06	19.06	2;3	1.2589E-44	13824	DP1145_14	200.93	144.89			249680000	1098	354	1040	1802;1803	2608;2609;2610;2611	2608		4	9606
IIEDQQESLNK	Unmodified	1315.662	0.66195975	128	P05455	SSB	Lupus La protein	yes	yes	0	0	0	3	0			1			14.938	14.938	2	6.0643E-33	7653	DP1145_13	186.16	90.417			36349000	1099	128	1041	1804	2612;2613	2613		2	9606
IIEEAPAPGIK	Unmodified	1136.6441	0.64412484	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.089	16.089	2	1.0919E-10	8984	DP1145_14	153.08	94.166			6778799999.999999	1100	647	1042	1805;1806;1807;1808;1809	2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624	2620		11	9606
IIEEAPATIATPAVFEHMEQCAVK	Oxidation (M)	2670.3033	0.30332417	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.86	18.86	3	2.9273E-05	12517	DP1145_11	107.25	91.874			117310000	1101	441	1043	1810	2625;2626	2626	321	2	9606
IIEEAPATIATPAVFEHMEQCAVK	Unmodified	2654.3084	0.30840955	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.225	20.225	3	1.182E-06	14501	DP1145_11	135.31	115.34			130350000	1102	441	1043	1811	2627;2628;2629;2630	2629		4	9606
IIEFVPTK	Unmodified	945.55352	0.55351892	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.861	17.861	2	2.7624E-27	10897	DP1145_11	166.78	67.399			606680000	1103	441	1044	1812	2631;2632;2633	2632		3	9606
IIGIMEEVADGFK	Unmodified	1420.7272	0.72720254	314	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	2	0		1				21.997	21.997	2	0.036109	19221	DP1145_12	66.262	31.038			2048800	1104	314	1045	1813	2634	2634		1	9606
IIIEDLLEATR	Unmodified	1284.7289	0.7289171	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1.5	0.5	1	1				21.762	21.762	2	0.00030817	16705	DP1145_11	155.58	95.107			16871000	1105	605	1046	1814;1815	2635;2636;2637	2635		3	9606
IIKDFMIQGGDPTGTGR	Oxidation (M)	1820.9091	0.90908309	784	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	1	1	5	0					1	16.978	16.978	3	0.0059467	9850	DP1145_15	85.636	67.179			14558000	1106	784	1047	1816	2638	2638	548	1	9606
IILDLISESPIK	Unmodified	1339.7963	0.79626839	347	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.5	0.5			1	1		21.262	21.262	2	7.7339E-18	17389	DP1145_13	174.41	119.04			51272000	1107	347	1048	1817;1818	2639;2640	2639		2	9606
IILTEQANEK	Unmodified	1157.6292	0.62920306	98	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	2	0		1				15.395	15.395	2	0.00037224	8934	DP1145_12	131.11	58.875			0	1108	98	1049	1819	2641	2641		1	9606
IINEPTAAAIAYGLDK	Unmodified	1658.8879	0.88793694	161;160	P11142;P54652;P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	no	no	0	0	0	3	0			1			19.796	19.796	2	0.016848	15261	DP1145_13	98.942	40.719			0	1109	161;160	1050	1820	2642	2642		1	9606
IINEPTAAAIAYGLDKK	Unmodified	1786.9829	0.98289996	161	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3.5	0.5			1	1		18.587	18.587	3	0.0015783	13461	DP1145_13	140.68	115.15			1151400000	1110	161	1051	1821;1822	2643;2644;2645	2643		2	9606
IINEPTAAAIAYGLDR	Unmodified	1686.8941	0.89408495	156;187	P0DMV9;P0DMV8;P17066	HSPA1B;HSPA1A;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6	no	no	0	0	0	3.67	0.943			2		1	19.982	19.982	2;3	1.9482E-148	15532	DP1145_13	249.69	186.51			681470000	1111	156;187	1052	1823;1824;1825	2646;2647;2648;2649;2650	2647		5	9606
IIPGFMCQGGDFTR	Unmodified	1597.7381	0.73811836	383	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	5	0					1	19.745	19.745	2	0.0046822	14034	DP1145_15	92.866	58.48			10800000	1112	383	1053	1826	2651	2651		1	9606
IIPPQPMEGLGFLDALNSAPVPGIK	Oxidation (M)	2589.3876	0.38764615	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	3	0.816		2	2	2		22.655	22.655	2;3	0.00039965	20078	DP1145_12	82.302	68.935			92742000	1113	644	1054	1827;1828;1829;1830;1831;1832	2652;2653;2654;2655;2656;2657;2658;2659	2652	466	8	9606
IIPPQPMEGLGFLDALNSAPVPGIK	Unmodified	2573.3927	0.39273153	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	3	0			2			23.529	23.529	2;3	0.00069418	20689	DP1145_13	77.838	57.941			42015000	1114	644	1054	1833;1834	2660;2661	2660		2	9606
IIQLLDDYPK	Unmodified	1216.6703	0.67033959	127	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		19.461	19.461	2	3.7933E-08	14275	DP1145_14	140.11	29.992			526960000	1115	127	1055	1835	2662;2663	2662		2	9606
IIQQAGQVWFPDSAFK	Unmodified	1833.9414	0.94136949	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1	1		1			20.718	20.718	2	3.9695E-32	15206	DP1145_11	229.56	185.66			610750000	1116	441	1056	1836;1837	2664;2665	2664		2	9606
IISDNLTYCK	Unmodified	1225.6013	0.60127375	774	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			16.673	16.673	2	0.010753	10433	DP1145_13	101.25	50.646			0	1117	774	1057	1838	2666	2666		1	9606
IITHPNFNGNTLDNDIMLIK	Unmodified	2282.1729	0.17290235	4	CON__P00761			yes	yes	0	0	0	3	1.48	3	1	2	3	2	21.711	21.711	2;3	1.9218E-92	15530	DP1145_13	181.54	144.11		+	6173299999.999999	1118	4	1058	1839;1840;1841;1842;1843;1844;1845;1846;1847;1848;1849	2667;2668;2669;2670;2671;2672;2673;2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684	2672		18	
IITHPNFNGNTLDNDIMLIK	Oxidation (M)	2298.1678	0.16781697	4	CON__P00761			yes	yes	0	1	0	2.75	1.48	1	1	1		1	23.859	23.859	3	1.0998E-46	13782	DP1145_15	192.25	120.65		+	3645399999.9999995	1119	4	1058	1850;1851;1852;1853	2685;2686;2687;2688;2689;2690;2691;2692	2692	1	8	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Oxidation (M)	3324.7136	0.71362475	4	CON__P00761			yes	yes	0	1	1	2	1	1		1			20.45	20.45	4	6.3375E-08	16299	DP1145_13	93.236	75.538		+	38680000	1120	4	1059	1854;1855	2693;2694	2694	1	2	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Unmodified	3308.7187	0.71871013	4	CON__P00761			yes	yes	0	0	1	3.67	0.943			2		1	20.776	20.776	3;4	2.0993E-05	17433	DP1145_13	61.538	44.103		+	402870000	1121	4	1059	1856;1857;1858	2695;2696;2697	2696		2	
IITLAGPTNAIFK	Unmodified	1357.7969	0.79693709	495	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		20.062	20.062	2	0.0013338	15271	DP1145_14	118.03	71.571			124870000	1122	495	1060	1859	2698	2698		1	9606
IIYGGSVTGATCK	Unmodified	1325.6649	0.66493664	332	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	2	0		1				16.047	16.047	2	0.003655	9971	DP1145_12	124.67	61.242			0	1123	332	1061	1860	2699	2699		1	9606
IKFEMEQNLR	Oxidation (M)	1322.6653	0.66527099	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	1.75	0.829	2	1	1			15.421	15.421	2;3	0.0008703	8347	DP1145_13	107.45	55.693		+	496220000	1124	20	1062	1861;1862;1863;1864	2700;2701;2702;2703;2704	2704	15	3	9606
IKFEMEQNLR	Unmodified	1306.6704	0.67035637	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	2	0		1				16.976	16.976	3	0.033501	11549	DP1145_12	86.898	45.499		+	36929000	1125	20	1062	1865	2705	2705		0	9606
IKGEHPGLSIGDVAK	Unmodified	1519.8358	0.83584179	149	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	1	4	0				1		15.4	15.4	3	0.0051061	7975	DP1145_14	134.81	89.73			183750000	1126	149	1063	1866	2706	2706		0	9606
IKSEHPGLSIGDTAK	Unmodified	1551.8257	0.82567103	221	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	1	4	0				1		14.486	14.486	3	0.0012	6482	DP1145_14	107.13	70.497			69860000	1127	221	1064	1867	2707	2707		1	9606
IKYPENFFLLR	Unmodified	1438.7973	0.79727144	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.2	0.748		1	2	2		19.933	19.933	2;3	5.718200000000001E-25	15071	DP1145_14	169.21	111.32			3314599999.9999995	1128	252;350;351	1065	1868;1869;1870;1871;1872	2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718	2716		11	9606
ILDPEGLALGAVIASSK	Unmodified	1652.9349	0.93488713	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2.25	1.09	1	2		1		21.975	21.975	2;3	0.0015302	19136	DP1145_12	102.08	78.243			48188000	1129	575	1066	1873;1874;1875;1876	2719;2720;2721;2722;2723;2724;2725	2722		7	9606
ILDQNFGEPHIPSR	Unmodified	1621.8213	0.82125436	576	Q8IZ21	PHACTR4	Phosphatase and actin regulator 4	yes	yes	0	0	0	3	0			1			17.378	17.378	3	0.007066	11767	DP1145_13	76.868	45.092			26426000	1130	576	1067	1877	2726	2726		1	9606
ILDSVGIEADDDRLNK	Unmodified	1771.8952	0.89520716	126	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	1	5	0					1	17.393	17.393	3	0.00076318	10619	DP1145_15	152.88	110.31			185850000	1131	126	1068	1878	2727	2727		1	9606
ILELSGSSSEDSEK	Unmodified	1479.694	0.69404774	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.387	16.387	2	4.3753999999999996E-32	8363	DP1145_11	190.26	121.41			16366000	1132	400	1069	1879	2728;2729	2728		2	9606
ILENSEDSSPECLF	Unmodified	1638.7083	0.70831759	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				21.458	21.458	2	0.0014411	18387	DP1145_12	103.31	78.474			13044000	1133	724	1070	1880	2730;2731	2730		2	9606
ILEPGLNILIPVLDR	Unmodified	1674.008	0.0079924964	756	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				1		23.303	23.303	2	0.00092121	19787	DP1145_14	137.01	109.23			10659000	1134	756	1071	1881	2732;2733	2732		2	9606
ILFRPVASQLPR	Unmodified	1395.8351	0.83505393	241	P35232	PHB	Prohibitin	yes	yes	0	0	1	4	0				1		17.659	17.659	3	0.0096713	11649	DP1145_14	77.387	49.003			110850000	1135	241	1072	1882	2734	2734		1	9606
ILGATIENSR	Unmodified	1072.5877	0.58767259	15	CON__P08727;P08727	KRT19	Keratin, type I cytoskeletal 19	yes	no	0	0	0	4	0				1		16.088	16.088	2	0.0010924	9042	DP1145_14	110.41	40.14		+	42785000	1136	15	1073	1883	2735;2736	2735		2	9606
ILGDCYYCVSGLPEPRQDHAHCCVEMGLSMIK	2 Oxidation (M)	3826.6704	0.67039778	259	P40145	ADCY8	Adenylate cyclase type 8	yes	yes	0	2	1	1	0	1					24.853	24.853	3	0.0074003	20974	DP1145_11	53.481	41.458			0	1137	259	1074	1884	2737	2737	194;195	1	9606
ILGEGEFGSVMEGNLK	Unmodified	1678.8236	0.82362212	434	Q12866	MERTK	Tyrosine-protein kinase Mer	yes	yes	0	0	0	3	0			1			14.539	14.539	3	0.012199	7189	DP1145_13	58.723	0			26469000	1138	434	1075	1885	2738	2738		1	9606
ILGLLDAYLK	Unmodified	1117.6747	0.67469669	223	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			22.075	22.075	2	0.025904	18526	DP1145_13	80.455	37.208			21896000	1139	223	1076	1886	2739	2739		1	9606
ILLAELEQLK	Unmodified	1168.7067	0.7067251	145	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			20.479	20.479	2	9.8959E-05	16154	DP1145_13	117.81	58.461			203430000	1140	145	1077	1887	2740;2741	2740		2	9606
ILLDHEKEWK	Unmodified	1309.703	0.7030367	320	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	3	0			1			15.622	15.622	3	0.0037863	8744	DP1145_13	107.79	77.396			0	1141	320	1078	1888	2742	2742		1	9606
ILLTQENPFFR	Unmodified	1376.7452	0.74523587	427	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	3	1		1		1		20.788	20.788	2	8.672E-05	17414	DP1145_12	113.26	63.833			23167000	1142	427	1079	1889;1890	2743;2744	2743		2	9606
ILNVPQELYEK	Unmodified	1344.7289	0.7289171	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.768	18.768	2	1.2615E-43	12253	DP1145_11	198.72	142.29			1502199999.9999998	1143	441	1080	1891;1892	2745;2746;2747;2748;2749	2745		5	9606
ILPEIIPILEEGLR	Unmodified	1603.9549	0.95489429	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					23.614	23.614	2	0.020365	19342	DP1145_11	90.108	40.741			0	1144	605	1081	1893	2750	2750		1	9606
ILPQDLER	Unmodified	982.54475	0.54474515	87	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		16.743	16.743	2	0.035042	10513	DP1145_14	85.212	18.782			19443000	1145	87	1082	1894	2751	2751		1	9606
ILPTLEAVAALGNK	Unmodified	1408.829	0.8289655	436	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		20.761	20.761	2	2.9077E-06	16214	DP1145_14	150.15	89.461			83877000	1146	436	1083	1895	2752;2753;2754	2753		3	9606
ILQNEPLPER	Unmodified	1207.6561	0.65608651	105	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3	0			1			16.135	16.135	2	4.7242E-06	9592	DP1145_13	130.56	88.583			120000000	1147	105	1084	1896	2755	2755		1	9606
ILSKPIEVQVGGR	Unmodified	1394.8245	0.82454882	549	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	1.5	0.5	1	1				16.116	16.116	3	0.0072031	10211	DP1145_12	78.401	47.496			22682000	1148	549	1085	1897;1898	2756;2757;2758	2758		3	9606
ILTDEMLLQACEGR	Unmodified	1647.796	0.79602716	524	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	4	0				1		19.759	19.759	2	0.0031013	14762	DP1145_14	116.84	81.172			0	1149	524	1086	1899	2759	2759		1	9606
ILTDYGFEGHPFR	Unmodified	1550.7518	0.75177781	82	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	4	0				1		18.56	18.56	3	0.0036547	12996	DP1145_14	69.03	50.617			9437100	1150	82	1087	1900	2760	2760		1	9606
ILTFDQLALDSPK	Unmodified	1459.7922	0.79224564	421	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	4.5	0.5				1	1	20.666	20.666	2	2.284E-85	15351	DP1145_15	225.93	136.91			131600000	1151	421	1088	1901;1902	2761;2762;2763	2762		3	9606
IMDQAITVGAPVIGLNDSGGAR	Oxidation (M)	2170.1052	0.10521671	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		19.474	19.474	2;3	7.317399999999999E-50	14887	DP1145_13	198.61	143.36			490320000	1152	124	1089	1903;1904;1905	2764;2765;2766;2767	2764	91	4	9606
IMDQAITVGAPVIGLNDSGGAR	Unmodified	2154.1103	0.11030209	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.081	20.081	2	1.0999E-05	15807	DP1145_13	140.03	96.04			267760000	1153	124	1089	1906;1907	2768;2769	2768		2	9606
IMEFTTTLLNTSPEGWK	Unmodified	1966.971	0.97101464	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.739	21.739	2	0.012524	16677	DP1145_11	109.44	65.941			0	1154	400	1090	1908	2770	2770		1	9606
IMLPWDPTGK	Oxidation (M)	1172.59	0.58998078	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		20.162	20.162	2	1.5519E-11	15405	DP1145_14	150.36	86.154			60841000	1155	210	1091	1909	2771;2772	2771	172	2	9606
IMLPWDPTGK	Unmodified	1156.5951	0.59506616	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		20.86	20.86	2	0.010354	16488	DP1145_14	95.502	56.726			37897000	1156	210	1091	1910	2773	2773		1	9606
IMNTFSVMPSPK	2 Oxidation (M)	1382.6574	0.65740842	464;669	Q13885;Q9BVA1;Q9BUF5	TUBB2A;TUBB2B;TUBB6	Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	2	0	1	0	1					16.391	16.391	2	0.00046905	8499	DP1145_11	124.67	80.055			38565000	1157	464;669	1092	1911	2774	2774	356;357	1	9606
IMNTFSVMPSPK	Unmodified	1350.6676	0.66757917	464;669	Q13885;Q9BVA1;Q9BUF5	TUBB2A;TUBB2B;TUBB6	Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	0	3	0			1			18.658	18.658	2	0.036944	13484	DP1145_13	72.2	38.014			28324000	1158	464;669	1092	1912	2775	2775		1	9606
IMNTFSVVPSPK	Oxidation (M)	1334.6904	0.69042311	394;137;113;454	P04350;P07437;P68371;Q13509	TUBB4A;TUBB;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain	no	no	0	1	0	3	1.41	1	1	1	1	1	17.653	17.653	2	1.3179E-05	12627	DP1145_12	140.78	79.219			1723799999.9999998	1159	113;137;394;454	1093	1913;1914;1915;1916;1917	2776;2777;2778;2779;2780;2781;2782;2783	2777	68	7	9606
IMNTFSVVPSPK	Unmodified	1318.6955	0.69550848	394;137;113;454	P04350;P07437;P68371;Q13509	TUBB4A;TUBB;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain	no	no	0	0	0	3.5	0.5			1	1		18.5	18.5	2	2.9906E-23	13289	DP1145_13	177.78	103.4			859360000	1160	113;137;394;454	1093	1918;1919	2784;2785;2786;2787	2785		4	9606
IMNVIGEPIDER	Oxidation (M)	1400.697	0.69696505	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		17.421	17.421	2	0.021085	11230	DP1145_14	94.297	54.448			106190000	1161	131	1094	1920;1921;1922	2788;2789;2790	2790	94	1	9606
INEELESQYQQSMDSK	Oxidation (M)	1943.8419	0.84185096	33	O00193	SMAP	Small acidic protein	yes	yes	0	1	0	4.5	0.5				1	1	16.402	16.402	2	8.9762E-106	9651	DP1145_14	234.87	200.37			49690000	1162	33	1095	1923;1924	2791;2792	2791	26	2	9606
INEILSNALK	Unmodified	1113.6394	0.63937381	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			18.112	18.112	2	9.3798E-06	12830	DP1145_13	123.21	64.612			475200000	1163	310	1096	1925	2793	2793		1	9606
INEKPQVIADYESGR	Unmodified	1717.8635	0.8635131	74	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	1	5	0					1	16.286	16.286	3	0.00016483	8832	DP1145_15	143.93	112.27			47103000	1164	74	1097	1926	2794	2794		1	9606
INFYCPGSALGR	Unmodified	1353.65	0.64995528	789	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					18.86	18.86	2	0.021464	12583	DP1145_11	76.228	36.355			5121300	1165	789	1098	1927	2795	2795		1	9606
INGWAVECR	Unmodified	1103.5182	0.51821282	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		16.991	16.991	2	0.00095991	9504	DP1145_11	114.89	64.87			14126000	1166	123	1099	1928;1929	2796;2797	2796		2	9606
INHDCVPEQVIAEAIR	Unmodified	1862.9309	0.93088116	268	P42336	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform	yes	yes	0	0	0	4	0				1		18.827	18.827	3	0.040145	13149	DP1145_14	42.947	14.401			10895000	1167	268	1100	1930	2798	2798		1	9606
INIPPQR	Unmodified	836.48684	0.48683634	450	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			1			14.826	14.826	2	0.02855	7639	DP1145_13	91.584	38.901			4673500	1168	450	1101	1931	2799	2799		1	9606
INISEGNCPER	Unmodified	1287.5877	0.58774895	495	Q15366;P57721;Q15365	PCBP2;PCBP3;PCBP1	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1	yes	no	0	0	0	3.5	0.5			1	1		15.182	15.182	2	1.6159E-13	7661	DP1145_14	183.47	140.03			105820000	1169	495	1102	1932;1933	2800;2801	2801		2	9606
INTQWLLTSGTTEANAWK	Unmodified	2033.0218	0.02180466	27	CON__Streptavidin			yes	yes	0	0	0	4	1.58	8	2	2	3	30	27.08	27.08	2;3	0	29809	DP1145_11	309.17	249.97		+	103970000000	1170	27	1103	1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977;1978	2802;2803;2804;2805;2806;2807;2808;2809;2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843;2844;2845;2846;2847;2848;2849;2850;2851;2852;2853;2854;2855;2856;2857;2858;2859;2860;2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918	2818		116	
INTQWLLTSGTTEANAWKSTLVGHDTFTK	Unmodified	3219.62	0.62004194	27	CON__Streptavidin			yes	yes	0	0	1	5	0					3	21.148	21.148	3;4	1.1272999999999999E-23	16182	DP1145_15	164.05	144.81		+	864470000	1171	27	1104	1979;1980;1981	2919;2920;2921;2922;2923;2924;2925;2926;2927	2924		9	
INVYYNEAAGNK	Unmodified	1354.6517	0.65172941	464	Q13885	TUBB2A	Tubulin beta-2A chain	yes	yes	0	0	0	3	2	1				1	16.247	16.247	2	0.00028164	8720	DP1145_15	120.27	86.1			139230000	1172	464	1105	1982;1983	2928;2929;2930	2929		3	9606
INVYYNEATGGK	Unmodified	1327.6408	0.64083038	394	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	2.6	1.02	1	1	2	1		16.615	16.615	2	1.7289E-31	10372	DP1145_13	197.21	159.48			126290000	1173	394	1106	1984;1985;1986;1987;1988	2931;2932;2933;2934;2935;2936	2933		6	9606
INVYYNEATGGNYVPR	Unmodified	1828.8744	0.87441214	113	P04350	TUBB4A	Tubulin beta-4A chain	yes	yes	0	0	0	5	0					1	18.292	18.292	2	0.008327	11864	DP1145_15	89.629	62.531			30040000	1174	113	1107	1989	2937	2937		1	9606
IPAFLNVVDIAGLVK	Unmodified	1567.9338	0.93376492	728	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	4	0				1		23.543	23.543	2	0.0119	20188	DP1145_14	96.604	51.236			0	1175	728	1108	1990	2938	2938		1	9606
IPCDSPQSDPVDTPTSTK	Unmodified	1943.8782	0.87823647	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			15.757	15.757	2	3.31E-232	9548	DP1145_12	298.78	269.24			203850000	1176	278	1109	1991;1992	2939;2940;2941;2942	2939		4	9606
IPDEFDNDPILVQQLR	Unmodified	1910.9738	0.97379183	515	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				1		20.86	20.86	2	0.040513	16433	DP1145_14	130.15	80.965			6930400	1177	515	1110	1993	2943	2943		0	9606
IPDWFLNR	Unmodified	1059.5502	0.55016488	360	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	20.371	20.371	2	9.8933E-05	15111	DP1145_15	127.84	54.805			121940000	1178	360	1111	1994	2944	2944		1	9606
IPGYDPEPVEK	Unmodified	1242.6132	0.61321864	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				16.475	16.475	2	0.013418	10817	DP1145_12	87.806	44.172			211770000	1179	520	1112	1995	2945;2946	2945		2	9606
IPLLLTSLSFK	Unmodified	1230.7588	0.75876067	481	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					22.081	22.081	2	0.0030741	17154	DP1145_11	109.29	100.8			5809500	1180	481	1113	1996	2947	2947		1	9606
IPLSQEEITLQGHAFEAR	Unmodified	2038.0484	0.048353761	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		18.67	18.67	2;3	1.3583E-204	13590	DP1145_13	268.13	202.62			2465000000	1181	647	1114	1997;1998;1999;2000	2948;2949;2950;2951;2952	2949		5	9606
IPVGPETLGR	Unmodified	1037.5869	0.58694431	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				16.972	16.972	2	0.0014063	11457	DP1145_12	109.48	74.183			49467000	1182	131	1115	2001;2002	2953;2954	2954		2	9606
IPVQAVWAGWGHASENPK	Unmodified	1945.9799	0.97988027	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	2.33	1.25	1	1		1		19.053	19.053	3	1.6129E-17	12754	DP1145_11	173.51	134.62			185590000	1183	441;43	1116	2003;2004;2005	2955;2956;2957	2955		2	9606
IPWFQYPIIYDIR	Unmodified	1722.9134	0.91336383	655	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		23.423	23.423	2	1.6508E-10	19940	DP1145_14	180.19	130.69			18248000	1184	655	1117	2006	2958;2959	2958		2	9606
IQASTMAFK	Unmodified	995.511	0.51100218	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	16.19	16.19	2	0.00891	8706	DP1145_15	98.458	3.1058			39789000	1185	253	1118	2007	2960;2961	2960		2	9606
IQDKEGIPPDQQR	Unmodified	1522.774	0.77396981	384	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	2.57	1.4	2	2	1	1	1	14.022	14.022	3	0.00022433	4431	DP1145_11	111.72	68.113			55138000	1186	384	1119	2008;2009;2010;2011;2012;2013;2014	2962;2963;2964;2965;2966;2967;2968;2969;2970;2971;2972	2962		11	9606
IQEGVESLAGYADIFLR	Unmodified	1879.968	0.96797818	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		23.17	23.17	2;3	1.9682000000000002E-198	20000	DP1145_13	265.77	204.35			65754000	1187	124	1120	2015;2016;2017	2973;2974;2975;2976;2977	2973		5	9606
IQETQAELPR	Unmodified	1183.6197	0.619701	475	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	2	0		1				15.467	15.467	2	3.5586E-06	9178	DP1145_12	132.76	83.043			7081500	1188	475	1121	2018	2978	2978		1	9606
IQLLDLPGIIEGAK	Unmodified	1478.8708	0.87083031	769	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	4	0				1		22.526	22.526	2	0.030647	18802	DP1145_14	68.515	30.819			2964500	1189	769	1122	2019	2979	2979		1	9606
IQLPVVSK	Unmodified	882.55385	0.55385327	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0.816		1	1	1		17.338	17.338	2	0.0046434	11440	DP1145_13	113.41	44.625			279150000	1190	278	1123	2020;2021;2022	2980;2981;2982;2983	2981		4	9606
IQLSSLIAAFQVTR	Unmodified	1545.8879	0.88787736	263	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	4	0				1		22.987	22.987	2	1.8313E-55	19429	DP1145_14	208.74	126.46			2096800	1191	263	1124	2023	2984;2985	2985		2	9606
IQTQPGYANTLR	Unmodified	1360.7099	0.709913	406	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	1	0	2					15.942	15.942	2	0.00065087	7853	DP1145_11	175.65	77.063			0	1192	406	1125	2024;2025	2986;2987	2987		2	9606
IQVRLGEHNIDVLEGNEQFINAAK	Unmodified	2706.4089	0.40892695	4	CON__P00761			yes	yes	0	0	1	4	1			1		1	19.385	19.385	3	1.4893E-07	13612	DP1145_15	154.95	130.32		+	95038000	1193	4	1126	2026;2027	2988;2989	2989		2	
IRLENEIQTYR	Unmodified	1433.7627	0.76267685	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2	1	1		1			16.822	16.822	2	9.9858E-101	9211	DP1145_11	233.84	138.48		+	176600000	1194	18	1127	2028;2029	2990;2991	2990		0	9606
IRLESEEEGVPSTAIR	Unmodified	1784.9268	0.92684164	130	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	4	0				1		16.759	16.759	3	0.00081799	10147	DP1145_14	90.706	48.881			92920000	1195	130	1128	2030	2992	2992		1	9606
ISADTTDNSGTVNQIMMMANNPEDWLSLLLKLEK	Oxidation (M)	3807.8369	0.83691229	238	P33981	TTK	Dual specificity protein kinase TTK	yes	yes	0	1	1	1	0	1					19.602	19.602	4	0.011362	13400	DP1145_11	41.434	20.782			47399000	1196	238	1129	2031	2993	2993	187	1	9606
ISAFQSAFHSIKENEK	Unmodified	1834.9214	0.92136233	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	1	2	0		1				17.082	17.082	4	0.042404	11680	DP1145_12	58.817	31.358			16853000	1197	534	1130	2032	2994	2994		0	9606
ISAMKEEKEQLSAER	Oxidation (M)	1763.8724	0.87236323	765	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	1	2	2	0		2				13.713	13.713	3;4	0.0070779	6647	DP1145_12	100.4	68.817			1487600	1198	765	1131	2033;2034	2995;2996	2995	539	1	9606
ISDIQSQLEK	Unmodified	1159.6085	0.60846762	731	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3.5	0.5			1	1		16.458	16.458	2	5.2951E-28	10069	DP1145_13	179.51	41.447			29471000	1199	731	1132	2035;2036	2997;2998	2997		2	9606
ISEQFTAMFR	Oxidation (M)	1244.586	0.58595803	394;137;464;113;454	P04350;P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	1	0	2	1	1		1			18.119	18.119	2	1.8478E-05	12688	DP1145_13	131.62	88.752			510520000	1200	113;137;394;464;454	1133	2037;2038	2999;3000	3000	69	2	9606
ISEQFTAMFR	Unmodified	1228.591	0.59104341	394;137;464;113;454	P04350;P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	5	0					1	19.691	19.691	2	3.0645E-85	13913	DP1145_15	222.19	130.87			9841200	1201	113;137;394;464;454	1133	2039	3001	3001		1	9606
ISEQTYQLSR	Unmodified	1223.6146	0.61461563	346	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	1	0	1					15.94	15.94	2	0.00086281	7842	DP1145_11	126.31	71.591			0	1202	346	1134	2040	3002	3002		1	9606
ISGLIYEETR	Unmodified	1179.6136	0.61355299	370	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	17.592	17.592	2	2.0149E-121	10859	DP1145_15	237.92	149.75			1013099999.9999999	1203	370	1135	2041	3003;3004	3003		2	9606
ISGSILNELIGLVR	Unmodified	1482.877	0.87697832	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	3	0			1			23.939	23.939	2	7.1579E-16	21224	DP1145_13	172.27	99.668			7514400	1204	566	1136	2042	3005;3006;3007	3006		3	9606
ISLGLPVGAVINCADNTGAK	Unmodified	1969.0303	0.030260856	372	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	3	2	1				1	20.566	20.566	2	2.5644999999999997E-46	15298	DP1145_15	193.45	146.39			245130000	1205	372	1137	2043;2044	3008;3009;3010;3011	3010		4	9606
ISLLLDPGSFVESDMFVEHR	Oxidation (M)	2306.1253	0.12528345	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.33	0.471			2	1		21.762	21.762	2;3	0.0013505	18077	DP1145_13	97.621	60.579			217380000	1206	124	1138	2045;2046;2047	3012;3013;3014;3015	3012	92	3	9606
ISLLLDPGSFVESDMFVEHR	Unmodified	2290.1304	0.13036883	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			22.642	22.642	3	1.9748E-60	19338	DP1145_13	207.56	161.67			92548000	1207	124	1138	2048	3016;3017	3016		2	9606
ISLLPNDEDSLPPLLVASGEK	Unmodified	2206.1733	0.1732795	554	Q7Z3T8	ZFYVE16	Zinc finger FYVE domain-containing protein 16	yes	yes	0	0	0	1	0	1					22.185	22.185	2	8.2139E-05	17345	DP1145_11	143.93	107.93			0	1208	554	1139	2049	3018	3018		1	9606
ISLPLPNFSSLNLR	Unmodified	1569.8879	0.88787736	145	P08670	VIM	Vimentin	yes	yes	0	0	0	4	0.816			1	1	1	22.17	22.17	2	1.0511E-69	18540	DP1145_13	217.02	164.29			98500000	1209	145	1140	2050;2051;2052	3019;3020;3021;3022;3023	3020		5	9606
ISLPVILMDETLK	Unmodified	1470.8368	0.83675299	185	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1	0	1					22.594	22.594	2	0.029779	17979	DP1145_11	76.332	38.61			3290300	1210	185	1141	2053	3024	3024		1	9606
ISLSSDIMSHK	Unmodified	1216.6122	0.61217279	794				yes	yes	0	0	0	5	0					1	15.542	15.542	2	0.014434	7861	DP1145_15	86.67	18.654	+		466080000	1211	794	1142	2054	3025	3025		1	9606
ISPDLNIK	Unmodified	898.51238	0.51238239	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				16.575	16.575	2	0.040039	10858	DP1145_12	104.75	35.571			56162000	1212	534	1143	2055	3026	3026		0	9606
ISSLLEEQFQQGK	Unmodified	1505.7726	0.77257283	354	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	3	1		1		1		18.618	18.618	2	0.0053137	13266	DP1145_14	91.636	17.103			204160000	1213	354	1144	2056;2057	3027;3028	3028		2	9606
ISTLTIEEGNLDIQRPK	Unmodified	1926.0422	0.042205751	439	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	1	4	0				1		18.16	18.16	3	0.0013555	12455	DP1145_14	115.04	85.419			76740000	1214	439	1145	2058	3029;3030	3029		2	9606
ISVMGGEQAANVLATITK	Unmodified	1801.9608	0.96078431	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	21.163	21.163	2	5.3815E-34	16081	DP1145_15	184.21	103.34			1028999999.9999999	1215	710	1146	2059;2060;2061;2062	3031;3032;3033;3034;3035;3036;3037	3036		7	9606
ISVMGGEQAANVLATITK	Oxidation (M)	1817.9557	0.95569893	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			20.153	20.153	2	3.4384000000000004E-177	15843	DP1145_13	257.81	190.42			2251200000	1216	710	1146	2063;2064	3038;3039	3039	511	1	9606
ISVYYNEATGGK	Unmodified	1300.6299	0.62993134	137	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		16.568	16.568	2	1.0335E-54	10329	DP1145_13	202.44	159			2519000000	1217	137	1147	2065;2066	3040;3041	3040		2	9606
ITAEEMYDIFGK	Oxidation (M)	1431.6592	0.65918256	782	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	1	0	5	0					1	19.27	19.27	2	0.037015	13391	DP1145_15	104.52	58.526			0	1218	782	1148	2067	3042	3042	547	1	9606
ITDIIGKEEGIGPENLR	Unmodified	1852.9894	0.9894419	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.75	0.829	2	1	1			18.169	18.169	2;3	1.3221E-32	11419	DP1145_11	233.84	188.63			586110000	1219	441	1149	2068;2069;2070;2071	3043;3044;3045;3046;3047;3048;3049	3044		7	9606
ITFLLQAIR	Unmodified	1073.6597	0.65971533	35	O00410	IPO5	Importin-5	yes	yes	0	0	0	2	0		1				20.732	20.732	2	0.00055198	17342	DP1145_12	117.93	47.409			6118000	1220	35	1150	2072	3050	3050		1	9606
ITGEAFVQFASQELAEK	Unmodified	1866.9363	0.9363437	313	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3.5	0.5			1	1		21.974	21.974	2	3.8906E-23	17978	DP1145_14	219.97	158.76			125270000	1221	313	1151	2073;2074	3051;3052	3052		1	9606
ITHQIVDRPGQQTSVIGR	Unmodified	2004.0865	0.086470602	39	O00541	PES1	Pescadillo homolog	yes	yes	0	0	1	3	0			1			15.038	15.038	4	0.030199	7891	DP1145_13	73.498	46.349			77746000	1222	39	1152	2075	3053	3053		0	9606
ITISPLQELTLYNPER	Unmodified	1886.0149	0.014928368	36	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			21.878	21.878	2	0.01189	18278	DP1145_13	82.774	55.626			11238000	1223	36	1153	2076	3054	3054		1	9606
ITKPDGIVEER	Unmodified	1255.6772	0.67721588	32	O00165	HAX1	HCLS1-associated protein X-1	yes	yes	0	0	1	4	0				1		14.787	14.787	3	0.00015985	6942	DP1145_14	122.18	69.165			14928000	1224	32	1154	2077	3055	3055		1	9606
ITLIIGGSYGAGNYGMCGR	Unmodified	1958.9343	0.93425198	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.18	20.18	2	0.017395	15643	DP1145_13	81.709	37.093			84424000	1225	710	1155	2078	3056	3056		1	9606
ITPENLPQILLQLK	Unmodified	1618.9658	0.96579333	274	P43243	MATR3	Matrin-3	yes	yes	0	0	0	3	1		1		1		22.629	22.629	2	0.0013348	18926	DP1145_14	117.71	87.5			7440900	1226	274	1156	2079;2080	3057;3058;3059;3060	3060		4	9606
ITPSYVAFTPEGER	Unmodified	1565.7726	0.77257283	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			18.579	18.579	2	0.010694	13468	DP1145_13	81.625	57.636			121010000	1227	160	1157	2081	3061	3061		1	9606
ITQDIFQQLLK	Unmodified	1345.7606	0.76055158	328	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				21.31	21.31	2	3.1400999999999998E-43	18178	DP1145_12	195.32	131.11			9741000	1228	328	1158	2082	3062;3063	3062		2	9606
ITSEAEDLVANFFPK	Unmodified	1679.8407	0.8406524	342	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		22.695	22.695	2	0.0011519	18814	DP1145_14	134.75	92.274			9167900	1229	342	1159	2083	3064	3064		1	9606
ITSEALLVTQQLVK	Unmodified	1541.9029	0.90285872	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				19.978	19.978	2	0.034333	16346	DP1145_12	67.385	15.218			61665000	1230	566	1160	2084	3065	3065		1	9606
ITSENPDEGFKPSSGTVQELNFR	Unmodified	2551.2191	0.2190605	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1.33	0.471	2	1				18.303	18.303	2;3	1.7783E-160	11734	DP1145_11	241.64	210.64			503100000	1231	441;43	1161	2085;2086;2087	3066;3067;3068;3069	3068		4	9606
ITVLEALR	Unmodified	913.55967	0.55966693	730	Q9NVI7;Q5T9A4;Q5T2N8	ATAD3A;ATAD3B;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			18.979	18.979	2	2.8622E-24	13999	DP1145_13	173.59	93.13			32635000	1232	730	1162	2088	3070	3070		0	9606
ITVTSEVPFSK	Unmodified	1206.6496	0.64960415	243	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	5	0					1	17.792	17.792	2	0.00055665	11304	DP1145_15	109.83	71.743			201270000	1233	243	1163	2089	3071	3071		1	9606
IVADKDYSVTANSK	Unmodified	1509.7675	0.76748745	136	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	3	1.41	1			2		14.433	14.433	3	4.5503E-32	6664	DP1145_14	199.31	147.67			1075100	1234	136	1164	2090;2091;2092	3072;3073;3074	3073		3	9606
IVAERPGTNSTGPAPMAPPR	Oxidation (M)	2034.0317	0.031657839	449	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	1	2	0		1				14.767	14.767	3	0.0039542	8066	DP1145_12	91.317	57.521			12972000	1235	449	1165	2093	3075	3075	342	1	9606
IVALNAHTFLR	Unmodified	1253.7244	0.72444085	205	P22087;A6NHQ2	FBL;FBLL1	rRNA 2'-O-methyltransferase fibrillarin;rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	yes	no	0	0	0	4	0				1		17.959	17.959	3	0.030638	11922	DP1145_14	85.533	51.147			155180000	1236	205	1166	2094	3076	3076		0	9606
IVDDDVSWTAISTTK	Unmodified	1649.8148	0.81483158	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	4	1			1		1	19.185	19.185	2	0.00064148	14509	DP1145_13	113.24	72.16			175150000	1237	665	1167	2095;2096	3077;3078	3077		2	9606
IVDDLKDEAEQYRK	Unmodified	1720.8632	0.86317875	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	2	2	0		1				16.042	16.042	3	0.014686	9982	DP1145_12	97.957	63.037			78115000	1238	84	1168	2097	3079	3079		0	9606
IVEIPFNSTNK	Unmodified	1260.6714	0.67140222	119	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1.5	0.5	1	1				18.018	18.018	2	0.00029554	13044	DP1145_12	126.31	76.28			36933000	1239	119	1169	2098;2099	3080;3081	3081		2	9606
IVEPYIAWGYPNLK	Unmodified	1661.8817	0.88172935	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		21.146	21.146	2	0.00035302	16889	DP1145_14	137.95	52.42			162850000	1240	195	1170	2100	3082;3083	3082		2	9606
IVGDLAQFMVQNGLSR	Unmodified	1746.9087	0.90868916	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			21.639	21.639	2	0	18681	DP1145_12	301.35	211.2			327100000	1241	164	1171	2101;2102;2103	3084;3085;3086;3087	3085		4	9606
IVGDLAQFMVQNGLSR	Oxidation (M)	1762.9036	0.90360378	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1.5	0.5	1	1				19.753	19.753	2	0.0040983	15900	DP1145_12	139.19	102.66			44039000	1242	164	1171	2104;2105	3088;3089	3089	142	2	9606
IVIGDASETALLK	Unmodified	1328.7551	0.75513185	200	P20648	ATP4A	Potassium-transporting ATPase alpha chain 1	yes	yes	0	0	0	3	0			1			15.138	15.138	3	0.0029093	8126	DP1145_13	89.9	34.179			130940000	1243	200	1172	2106	3090	3090		1	9606
IVIGYQSHADTATK	Unmodified	1502.7729	0.77290718	132	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	4	0				1		15.294	15.294	3	0.0096978	7530	DP1145_14	120.59	74.824			6339400	1244	132	1173	2107	3091	3091		0	9606
IVLDNSVFSEHR	Unmodified	1414.7205	0.72047768	408	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1	0	1					17.726	17.726	3	0.019078	10722	DP1145_11	82.362	47.285			6580300	1245	408	1174	2108	3092	3092		0	9606
IVLEDGTLHVTEGSGR	Unmodified	1681.8635	0.8635131	503	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	1	0	1					17.179	17.179	3	0.003703	9821	DP1145_11	90.444	65.563			8780600	1246	503	1175	2109	3093	3093		1	9606
IVLQIDNAR	Unmodified	1040.5978	0.59784335	15;129	CON__P08727;P08727;CON__P19001;CON__P05784;P05783	KRT19;KRT18	Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 18	no	no	0	0	0	3	0			1			17.083	17.083	2	0.018106	11206	DP1145_13	87.639	30.462		+	104230000	1247	15;129	1176	2110	3094	3094		1	9606
IVSSIFR	Unmodified	820.48069	0.48068833	688	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	4	0				1		17.26	17.26	2	1.7473E-12	10961	DP1145_14	146.21	62.984			15568000	1248	688	1177	2111	3095	3095		1	9606
IVTSEEVIIR	Unmodified	1157.6656	0.66558856	790	Q9Y639	NPTN	Neuroplastin	yes	yes	0	0	0	1	0	1					17.208	17.208	2	0.010437	9832	DP1145_11	101.9	52.799			0	1249	790	1178	2112	3096	3096		1	9606
IVVVTAGVR	Unmodified	912.57565	0.57565135	136	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	3	1		1		1		16.073	16.073	2	0.00019135	8979	DP1145_14	120.62	57.315			151270000	1250	136	1179	2113;2114	3097;3098;3099;3100	3099		4	9606
IVYLYTK	Unmodified	898.51641	0.51640513	294	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	16.878	16.878	2	7.2228E-12	9786	DP1145_15	139.92	48.931			173820000	1251	294	1180	2115	3101	3101		1	9606
IWDPTPSHTPAGAATPGR	Unmodified	1830.9013	0.90129559	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				16.305	16.305	3	0.0068266	10267	DP1145_12	88.319	58.212			26606000	1252	84	1181	2116	3102	3102		1	9606
IWSLEGK	Unmodified	831.44905	0.44905385	684	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	3	0			1			17.738	17.738	2	0.0053896	12163	DP1145_13	104.11	35.018			7362500	1253	684	1182	2117	3103	3103		1	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Oxidation (M)	2640.3006	0.30062206	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.6	1.02	1	1	2	1		19.565	19.565	2;3	2.7681E-05	15646	DP1145_12	111.25	92.366			1009499999.9999999	1254	647	1183	2118;2119;2120;2121;2122	3104;3105;3106;3107;3108;3109;3110;3111;3112;3113;3114;3115;3116	3107	476	13	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Unmodified	2624.3057	0.30570743	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.5	20.5	3	8.989E-07	16237	DP1145_13	126.86	97.018			558390000	1255	647	1183	2123;2124;2125;2126	3117;3118;3119;3120;3121;3122;3123;3124	3121		8	9606
IYGFYDECK	Unmodified	1193.5063	0.50631073	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3	0			1			18.178	18.178	2	0.00035435	12982	DP1145_13	119.41	80.102			245380000	1256	252;350;351	1184	2127	3125	3125		1	9606
IYGFYDECKR	Unmodified	1349.6074	0.60742176	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	4	0				1		16.777	16.777	3	0.042284	10311	DP1145_14	89.029	73.022			35823000	1257	252;350;351	1185	2128	3126	3126		1	9606
IYIDSNNNPER	Unmodified	1333.6262	0.62624295	408	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2	0		1				15.467	15.467	2	0.036319	9162	DP1145_12	123.86	79.511			4210000	1258	408	1186	2129	3127	3127		0	9606
IYQEEEMPESGAGSEFNRK	Oxidation (M)	2215.9692	0.96917674	244	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	1	1	3	0			1			15.61	15.61	3	0.017248	8760	DP1145_13	72.676	57.196			16932000	1259	244	1187	2130	3128	3128	188	1	9606
KADTEEEFLAFR	Unmodified	1454.7042	0.70415892	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	0			1			18.364	18.364	2	4.5284E-23	13184	DP1145_13	203.83	151.57			107270000	1260	278	1188	2131	3129	3129		1	9606
KADTEEEFLAFRK	Unmodified	1582.7991	0.79912193	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1.5	0.5	1	1				16.871	16.871	3	9.8243E-05	11405	DP1145_12	145.81	114.95			182180000	1261	278	1189	2132;2133	3130;3131	3131		1	9606
KADVEEEFLAFR	Unmodified	1452.7249	0.72489436	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.5		1	1			19.329	19.329	2;3	0.026694	15337	DP1145_12	87.568	38.966			90596000	1262	278	1190	2134;2135	3132;3133	3132		2	9606
KADVEEEFLAFRK	Unmodified	1580.8199	0.81985737	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1	0	1					18.061	18.061	3	0.007686	11111	DP1145_11	92.295	71.046			9103500	1263	278	1191	2136	3134	3134		1	9606
KADVEEEFLALR	Unmodified	1418.7405	0.74054442	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		2				19.077	19.077	2;3	3.3598E-166	14867	DP1145_12	224.25	147.12			413540000	1264	278	1192	2137;2138	3135;3136;3137	3135		3	9606
KADVEEEFLALRK	Unmodified	1546.8355	0.83550744	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	2	1	0	1					17.761	17.761	3	0.030417	10799	DP1145_11	115.12	80.851			40597000	1265	278	1193	2139	3138	3138		0	9606
KADVEEESLALR	Unmodified	1358.7042	0.70415892	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.33	0.471		2	1			16.017	16.017	2;3	2.4718E-191	9932	DP1145_12	270.56	202			225750000	1266	278	1194	2140;2141;2142	3139;3140;3141;3142;3143;3144	3140		6	9606
KADVEEESLALRK	Unmodified	1486.7991	0.79912193	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2.5	0.5		1	1			14.803	14.803	3	0.011238	7543	DP1145_13	103.97	60.371			40926000	1267	278	1195	2143;2144	3145;3146	3146		1	9606
KADVEGELLACR	Unmodified	1359.6816	0.68164933	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	0			1			16.677	16.677	3	0.0059848	10409	DP1145_13	87.216	27.152			62053000	1268	278	1196	2145	3147	3147		1	9606
KAEAGAGSATEFQFR	Unmodified	1568.7583	0.75831975	288	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	1	5	0					1	16.154	16.154	3	0.00042396	8612	DP1145_15	87.138	52.706			26923000	1269	288	1197	2146	3148	3148		1	9606
KAEVEGKDLPEHAVLK	Unmodified	1761.9625	0.96249887	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	1	0	1					14.561	14.561	3	0.019349	5781	DP1145_11	137.73	87.638			6604300	1270	409	1198	2147	3149	3149		1	9606
KAEVNTIPGFDGVVK	Unmodified	1572.8512	0.8511575	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			2			17.61	17.61	2;3	1.7154E-42	12019	DP1145_13	234.87	171.17			265630000	1271	123	1199	2148;2149	3150;3151;3152;3153	3152		4	9606
KAGNFYVPAEPK	Unmodified	1319.6874	0.68738664	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.704	15.704	3	0.032174	8479	DP1145_14	48.044	26.744			114340000	1272	195	1200	2150	3154	3154		1	9606
KAGPGSLELCGLPSQK	Unmodified	1640.8556	0.85559095	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.5	0.5			1	1		16.868	16.868	2;3	0.0042037	10352	DP1145_14	72.187	28.871			126380000	1273	480	1201	2151;2152	3155;3156	3156		2	9606
KAIIIFVPVPQLK	Unmodified	1464.9432	0.9432074	349	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					2	19.944	19.944	2;3	0.00016883	14407	DP1145_15	141.95	128.15			21284000	1274	349	1202	2153;2154	3157;3158	3158		1	9606
KALAAAGYDVEK	Unmodified	1234.6558	0.65575216	184;157	P10412;P16402;P22492;Q02539;P16403	HIST1H1E;HIST1H1D;HIST1H1T;HIST1H1A;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1t;Histone H1.1;Histone H1.2	no	no	0	0	1	4	0				1		14.687	14.687	2	8.7658E-06	6970	DP1145_14	140.14	70.085			73422000	1275	157;184	1203	2155	3159;3160	3159		2	9606
KAQPAQPADEPAEKADEPMEH	Oxidation (M)	2304.0328	0.032839631	218	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	1	2	4	0				1		12.903	12.903	4	0.014196	4632	DP1145_14	70.986	61.037			2531400	1276	218	1204	2156	3161	3161	176	0	9606
KASGPPVSELITK	Unmodified	1325.7555	0.7554662	184;157	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	1	4	0				2		15.904	15.904	2;3	0.00061609	8598	DP1145_14	126.56	98.9			1519899999.9999998	1277	157;184	1205	2157;2158	3162;3163;3164;3165;3166	3163		5	9606
KATATISAKPQITNPK	Unmodified	1667.957	0.95701956	773	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	2	3	0			1			13.738	13.738	3	0.038416	6092	DP1145_13	162.64	84.136			9723200	1278	773	1206	2159	3167	3167		1	9606
KAYGGAYDVMSSK	Oxidation (M)	1391.6391	0.63911582	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	1	3	0			1			14.487	14.487	3	0.0016384	6753	DP1145_13	96.464	60.787			5809500	1279	124	1207	2160	3168;3169	3169	88	2	9606
KAYGGAYDVMSSK	Unmodified	1375.6442	0.6442012	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			15.517	15.517	2;3	1.5269E-16	8590	DP1145_13	174.21	119.23			72460000	1280	124	1207	2161;2162	3170;3171;3172	3171		3	9606
KAYVEANQMLGDLIK	Oxidation (M)	1707.8866	0.88655673	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	1	0	2					17.731	17.731	2;3	0.0015743	10701	DP1145_11	126.1	89.777			42864000	1281	164	1208	2163;2164	3173;3174	3173	138	2	9606
KAYVEANQMLGDLIK	Unmodified	1691.8916	0.89164211	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		2				19.294	19.294	2;3	0.0038931	15247	DP1145_12	136.6	60.272			24322000	1282	164	1208	2165;2166	3175;3176	3175		2	9606
KDAEAWFNEK	Unmodified	1236.5775	0.57750184	18	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7	KRT10;KRT28	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28	yes	no	0	0	1	1	0	2					16.593	16.593	2;3	2.3728000000000002E-35	8768	DP1145_11	186.87	82.671		+	51996000	1283	18	1209	2167;2168	3177;3178	3177		1	9606
KDEDPENKIEFK	Unmodified	1490.7253	0.72528829	443	Q13123	IK	Protein Red	yes	yes	0	0	2	3	0			1			14.838	14.838	3	5.2486E-31	7521	DP1145_13	190.78	131.52			258640000	1284	443	1210	2169	3179	3179		0	9606
KDGSSSVPLSFAR	Unmodified	1349.6939	0.69392858	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	3	0			1			16.394	16.394	3	0.014811	10022	DP1145_13	77.644	42.876			34840000	1285	520	1211	2170	3180	3180		1	9606
KDLPPLLLK	Unmodified	1035.6692	0.66921738	689	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	1	0	1					17.261	17.261	2	2.2453E-06	9926	DP1145_11	143.28	86.237			18110000	1286	689	1212	2171	3181	3181		0	9606
KDMNDTLTSALMGACVTASAMPSR	3 Oxidation (M)	2575.1386	0.13864339	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	3	1	2	0		1				18.276	18.276	3	1.9364E-05	13493	DP1145_12	109.19	94.64			28661000	1287	520	1213	2172	3182	3182	398;399;400	1	9606
KDMNDTLTSALMGACVTASAMPSR	2 Oxidation (M)	2559.1437	0.14372876	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	2	1	2	0		1				18.918	18.918	3	2.8395E-07	14844	DP1145_12	129.07	76.035			106110000	1288	520	1213	2173	3183;3184	3184	398;399;400	2	9606
KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	Unmodified	3438.6218	0.62177455	514	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	1	3	0			1			19.78	19.78	4	0.04291	15162	DP1145_13	35.22	0			136010000	1289	514	1214	2174	3185	3185		0	9606
KEEAGAGEQHQDCEPAAAAVR	Unmodified	2222.9975	0.99745718	717	Q9NPG3	UBN1	Ubinuclein-1	yes	yes	0	0	1	2	0		1				12.867	12.867	4	0.018441	5636	DP1145_12	61.477	33.005			638810	1290	717	1215	2175	3186	3186		0	9606
KEEELQAALAR	Unmodified	1256.6725	0.67246486	245	P35579;P35749;Q7Z406	MYH9;MYH11;MYH14	Myosin-9;Myosin-11;Myosin-14	yes	no	0	0	1	2	0		1				15.571	15.571	3	0.0039008	9308	DP1145_12	79.659	14.381			2920800	1291	245	1216	2176	3187	3187		1	9606
KEEGLPEEEPSHVTGR	Unmodified	1792.8592	0.85915601	188	P17098	ZNF8	Zinc finger protein 8	yes	yes	0	0	1	3	0			1			14.438	14.438	3	0.0028409	6942	DP1145_13	112.57	81.53			15210000	1292	188	1217	2177	3188	3188		1	9606
KEPAEISK	Unmodified	900.49165	0.49164694	803				yes	yes	0	0	1	2	0		1				17.476	17.476	1	0.043467	12320	DP1145_12	63.148	14.392	+		18162000	1293	803	1218	2178	3189	3189		1	9606
KESYSIYVYK	Unmodified	1278.6496	0.64960415	135	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	5	0					1	16.344	16.344	2	2.198E-06	8870	DP1145_15	137.98	61.912			377910000	1294	135	1219	2179	3190	3190		1	9606
KEVKEELSAVER	Unmodified	1415.762	0.76200815	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				14.468	14.468	3	0.002523	7623	DP1145_12	131.79	100.45			69343000	1295	278	1220	2180	3191	3191		1	9606
KFEEEGNPYYSSAR	Unmodified	1675.7478	0.74781464	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	1.41	2		2	2	1	15.629	15.629	2;3	0	8298	DP1145_14	305.3	242.11			5311900000	1296	710	1221	2181;2182;2183;2184;2185;2186;2187	3192;3193;3194;3195;3196;3197;3198;3199;3200;3201	3197		9	9606
KFGYVDFESAEDLEK	Unmodified	1775.8254	0.82539626	199	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.5		1	1			19.077	19.077	2;3	0.00035493	14888	DP1145_12	118.2	72.209			42991000	1297	199	1222	2188;2189	3202;3203;3204	3202		3	9606
KFVADGIFK	Unmodified	1023.5753	0.57531699	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		17.16	17.16	2	1.0952E-08	10769	DP1145_14	143.37	63.905			226250000	1298	210	1223	2190	3205	3205		1	9606
KGEKDIPGLTDTTVPR	Unmodified	1725.9261	0.92611336	369	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	2	4	0				1		16.01	16.01	3	0.01411	8928	DP1145_14	82.59	58.122			0	1299	369	1224	2191	3206	3206		1	9606
KGGGDIVEENEDLTALMLYDK	Unmodified	2309.1097	0.10969297	796				yes	yes	0	0	1	5	0					1	18.892	18.892	3	0.010724	12838	DP1145_15	74.618	33.925	+		1096000000	1300	796	1225	2192	3207	3207		1	9606
KGTHFVQLCCQR	Unmodified	1532.734	0.73403603	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.67	1.25	1		1	1		14.596	14.596	3	2.8461E-32	5882	DP1145_11	196.16	159.53			815700000	1301	710	1226	2193;2194;2195	3208;3209;3210;3211	3208		4	9606
KGVEGLIDIENPNR	Unmodified	1552.8209	0.82092001	453	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	1	4	0				1		17.959	17.959	3	0.04289	12020	DP1145_14	79.885	51.603			36577000	1302	453	1227	2196	3212	3212		0	9606
KHHLQPENPGPGGAAPSLEQNR	Unmodified	2333.1625	0.16248909	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.75	0.829		2	1	1		14.834	14.834	3;4	3.9715E-28	7429	DP1145_13	175.02	126.65			409000000	1303	480	1228	2197;2198;2199;2200	3213;3214;3215;3216;3217;3218;3219	3216		6	9606
KHLEINPDHPIVETLR	Unmodified	1910.0374	0.037395144	143	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	3.33	0.471			2	1		16.382	16.382	3;4	0.010612	9622	DP1145_14	88.108	63.627			90166000	1304	143	1229	2201;2202;2203	3220;3221;3222	3222		1	9606
KHPDASVNFSEFSK	Unmodified	1591.7631	0.76307078	149	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	1	4	0				1		16.115	16.115	3	4.8001E-10	9082	DP1145_14	125.36	88.764			116270000	1305	149	1230	2204	3223;3224	3224		2	9606
KIAPYVAHNFSK	Unmodified	1373.7456	0.74557022	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	1	1		1			14.762	14.762	3	1.0072999999999999E-53	5949	DP1145_11	205.12	147.6			60371000	1306	164	1231	2205;2206	3225;3226	3225		1	9606
KIEQVDKEDEITEK	Unmodified	1702.8625	0.86251005	774	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	2	3	0			1			14.139	14.139	3	2.6832E-22	6502	DP1145_13	180.95	94.248			46170000	1307	774	1232	2207	3227	3227		0	9606
KIHNANPELTDGQIQAMLR	Unmodified	2148.111	0.11097079	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.905	17.905	3	1.1277E-11	11006	DP1145_11	164.58	133.98			9591500	1308	441	1233	2208	3228	3228		1	9606
KIHNANPELTDGQIQAMLR	Oxidation (M)	2164.1059	0.10588542	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					16.355	16.355	3	0.0027643	8463	DP1145_11	124.25	94.805			32620000	1309	441	1233	2209	3229	3229	320	0	9606
KIPGYDPEPVEK	Unmodified	1370.7082	0.70818166	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2	0.707	1	2	1			15.466	15.466	2;3	0.00029262	7090	DP1145_11	101.38	52.1			498540000	1310	520	1234	2210;2211;2212;2213	3230;3231;3232;3233	3230		4	9606
KKELEEIVQPIISK	Unmodified	1652.9713	0.97127264	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	2	3	0			1			17.278	17.278	2	6.6193000000000005E-84	11367	DP1145_13	225.79	179.39			23883000	1311	160	1235	2214	3234	3234		0	9606
KKHHLQPENPGPGGAAPSLEQNR	Unmodified	2461.2575	0.25745211	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2.33	0.471		2	1			14.791	14.791	3;4	0.0068836	8151	DP1145_12	113.7	87.258			133810000	1312	480	1236	2215;2216;2217	3235;3236;3237	3236		3	9606
KKPLDGEYFTLQIR	Unmodified	1706.9356	0.93555583	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	2	3.5	0.5			1	1		18.069	18.069	3	2.9125E-09	12751	DP1145_13	125.84	97.29			147020000	1313	116	1237	2218;2219	3238;3239	3238		1	9606
KLAAAEGLEPK	Unmodified	1125.6394	0.63937381	265	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4	0				1		14.687	14.687	2	1.2117E-17	6905	DP1145_14	169.21	92.984			67561000	1314	265	1238	2220	3240;3241	3241		2	9606
KLASASLLDTDKR	Unmodified	1416.7936	0.79364262	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	2	3	0			1			14.938	14.938	3	1.4885E-09	7579	DP1145_13	161.49	108.48			92474000	1315	734	1239	2221	3242	3242		1	9606
KLAVNMVPFPR	Oxidation (M)	1286.7169	0.71691263	394;137;464;113;454;669;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB3;TUBB1;TUBB6	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	1	1	3.5	0.5			1	1		16.919	16.919	3	0.006496	10824	DP1145_13	89.679	46.935			467060000	1316	113;137;394;464;514;454;669	1240	2222;2223	3243;3244	3243	70	2	9606
KLDELYGTWR	Unmodified	1279.6561	0.65608651	251	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			17.878	17.878	3	1.0945E-06	12289	DP1145_13	144.77	102.43			34827000	1317	251	1241	2224	3245	3245		0	9606
KLDPELHLDIK	Unmodified	1319.7449	0.74490152	436	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	4	0				1		16.91	16.91	2	0.036813	10354	DP1145_14	89.9	20.229			0	1318	436	1242	2225	3246	3246		1	9606
KLDVTIEPSEEPLFPADELYGIVGANLK	Unmodified	3056.5958	0.59578425	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			22.892	22.892	3	6.9116E-10	19733	DP1145_13	122.67	109.1			25926000	1319	710	1243	2226	3247	3247		1	9606
KLDVTIEPSEEPLFPADELYGIVGANLKR	Unmodified	3212.6969	0.69689528	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	2	3	0			1			22.001	22.001	4	8.9544E-07	18518	DP1145_13	93.529	71.687			18899000	1320	710	1244	2227	3248;3249	3248		2	9606
KLEAAEDIAYQLSR	Unmodified	1605.8362	0.83623572	241	P35232	PHB	Prohibitin	yes	yes	0	0	1	4	0				1		18.76	18.76	3	0.00079933	13250	DP1145_14	103.66	53.373			63225000	1321	241	1245	2228	3250	3250		1	9606
KLENFLSR	Unmodified	1005.5607	0.56072956	626	Q96EU6	RRP36	Ribosomal RNA processing protein 36 homolog	yes	yes	0	0	1	4	0				1		16.395	16.395	2	0.007072	9613	DP1145_14	117.4	25.499			46168000	1322	626	1246	2229	3251	3251		1	9606
KLESVFFHSLSGSK	Unmodified	1564.8249	0.82494275	586	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	1	4	0				1		17.659	17.659	3	0.027702	11596	DP1145_14	78.985	57.073			11084000	1323	586	1247	2230	3252	3252		0	9606
KLETDGKLPPTVSK	Unmodified	1511.8559	0.85590853	533	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	2	3	0			1			14.339	14.339	3	0.029351	6888	DP1145_13	91.712	52.15			25087000	1324	533	1248	2231	3253	3253		0	9606
KLETNPDIKPSNVEPMEK	Oxidation (M)	2084.046	0.0459705	674	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	1	2	3	0			1			14.884	14.884	3	0.0074145	7687	DP1145_13	111.77	77.337			6010800	1325	674	1249	2232	3254	3254	496	1	9606
KLFIGGLSFETTDESLR	Unmodified	1911.9942	0.99419293	151	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				2		20.162	20.162	2;3	0.0075104	15402	DP1145_14	62.438	26.219			58021000	1326	151	1250	2233;2234	3255;3256	3256		2	9606
KLFVGGIKEDTEEHHLR	Unmodified	2007.0538	0.05377349	207	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	2	4	0				2		15.197	15.197	4;5	0.001255	7665	DP1145_14	144.4	0			108940000	1327	207	1251	2235;2236	3257;3258	3257		2	9606
KLFVGGLK	Unmodified	860.54837	0.54837396	444	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	1	4	0				1		15.779	15.779	2	0.0039348	8548	DP1145_14	111.65	0			0	1328	444	1252	2237	3259	3259		1	9606
KLGVQTVAVYSEADR	Unmodified	1634.8628	0.86278482	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0.816		1	1	1		16.671	16.671	3	0.00047509	11041	DP1145_12	102.63	84.936			962430000	1329	647	1253	2238;2239;2240	3260;3261;3262	3260		3	9606
KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR	Unmodified	4242.1822	0.18216849	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.5	0.5			1	1		19.558	19.558	4;5	2.6594E-15	14450	DP1145_14	77.215	51.594			71755000	1330	480	1254	2241;2242	3263;3264;3265;3266;3267;3268;3269	3267		7	9606
KLHYNEGLNIK	Unmodified	1327.7248	0.72483478	265	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4	0				2		15.039	15.039	2;3	1.0381E-42	7472	DP1145_14	194.12	126.22			1373000000	1331	265	1255	2243;2244	3270;3271;3272;3273	3271		3	9606
KLPAIALDLLR	Unmodified	1221.7809	0.78089309	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				20.278	20.278	2	0.0012616	16680	DP1145_12	127.4	96.324			16184000	1332	663	1256	2245	3274	3274		1	9606
KLYDIDVAK	Unmodified	1063.5914	0.59136099	368	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	16.007	16.007	2	0.0016548	8413	DP1145_15	117.53	73.177			140360000	1333	368	1257	2246	3275;3276	3275		2	9606
KMNEKGVLLWDK	Oxidation (M)	1475.7806	0.7806351	563	Q86UY8	NT5DC3	5'-nucleotidase domain-containing protein 3	yes	yes	0	1	2	1	0	1					16.867	16.867	2	0.017296	9290	DP1145_11	120.31	18.244			1167400000	1334	563	1258	2247	3277	3277	423	1	9606
KMNKHVLK	Unmodified	996.59026	0.59025555	430	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	2	4	0				1		22.887	22.887	1	0.012251	19290	DP1145_14	79.451	5.0358			18081000	1335	430	1259	2248	3278	3278		1	9606
KNFYFLEMNTR	Oxidation (M)	1477.7024	0.70238478	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			1			17.578	17.578	3	0.012419	11777	DP1145_13	78.903	49.84			43101000	1336	123	1260	2249	3279	3279	82	1	9606
KNFYFLEMNTR	Unmodified	1461.7075	0.70747015	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.797	18.797	3	0.026091	13761	DP1145_13	58.172	36.821			0	1337	123	1260	2250	3280	3280		1	9606
KNIVQHTTDSSLEEK	Unmodified	1727.869	0.86899241	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2	0		1				13.938	13.938	3	3.8014E-16	6882	DP1145_12	209.22	150.62			0	1338	698	1261	2251	3281	3281		1	9606
KNLLVTMLIDQLCGR	Oxidation (M)	1788.959	0.95901017	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					21.633	21.633	3	0.0078925	16515	DP1145_11	77.372	37.596			2835000	1339	441	1262	2252	3282	3282	322	1	9606
KNPASLPLTQAALK	Unmodified	1450.8508	0.85076357	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2.33	0.471		2	1			16.576	16.576	2;3	3.3849E-31	10806	DP1145_12	193.49	111.97			154870000	1340	451	1263	2253;2254;2255	3283;3284;3285;3286	3285		4	9606
KNPLPPSVGVVDKK	Unmodified	1476.8664	0.86641364	582	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	2	3	0			1			14.539	14.539	3	0.026589	7147	DP1145_13	101.75	58.456			35152000	1341	582	1264	2256	3287	3287		0	9606
KPALVSTVEGGQDPK	Unmodified	1524.8148	0.814772	481	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	1	0	1					15.063	15.063	3	0.022793	6476	DP1145_11	70.529	40.193			10953000	1342	481	1265	2257	3288	3288		0	9606
KPHIYYGSLEEKER	Unmodified	1747.8893	0.88933392	53	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	2	3	0			1			14.639	14.639	4	0.035822	7374	DP1145_13	74.133	44.515			52983000	1343	53	1266	2258	3289	3289		0	9606
KPLFHGDSEIDQLFR	Unmodified	1800.9159	0.91588303	130	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	4	0				1		18.96	18.96	2	0.0020392	13503	DP1145_14	111.31	65.715			18177000	1344	130	1267	2259	3290	3290		1	9606
KPLLSPIPELPEVPEMTPSIPSIR	Oxidation (M)	2655.4557	0.45572572	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	1	1	2	0		1				20.799	20.799	3	0.00055851	17461	DP1145_12	87.098	68.85			7767100	1345	534	1268	2260	3291;3292	3291	410	2	9606
KPLPDHVSIVEPK	Unmodified	1457.8242	0.82421447	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	2.5	1.5	1			1		15.298	15.298	3	2.2706E-08	7961	DP1145_14	156	89.981			105230000	1346	210	1269	2261;2262	3293;3294;3295	3294		3	9606
KPLPDHVSIVEPKDEILPTTPISEQK	Unmodified	2909.575	0.57498923	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	3	1.41	1			2		17.809	17.809	3;4	6.9146E-06	11913	DP1145_14	128.09	91.819			278850000	1347	210	1270	2263;2264;2265	3296;3297;3298;3299;3300;3301	3300		6	9606
KPPEADMNIFEDIGDYVPSTTK	Unmodified	2466.1625	0.16245682	443	Q13123	IK	Protein Red	yes	yes	0	0	1	3	0			1			21.378	21.378	3	0.0059657	17617	DP1145_13	67.552	46.809			34949000	1348	443	1271	2266	3302;3303	3302		2	9606
KPPGPPPGPPPPQVVQMYGR	Oxidation (M)	2111.0986	0.098615193	773	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	1	1	2	0		1				16.776	16.776	3	0.035951	11177	DP1145_12	56.424	28.901			6728700	1349	773	1272	2267	3304	3304	544	0	9606
KPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGK	Unmodified	3492.7664	0.76642087	423	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			3			13.693	13.693	5;6;7	7.7651E-11	5311	DP1145_13	84.214	69.052			17246000	1350	423	1273	2268;2269;2270	3305;3306;3307;3308;3309;3310;3311	3306		7	9606
KPVGEVHSQFSTGHANSPCTIIIGK	Unmodified	2663.349	0.34896923	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.957	1	2	2	1		16.146	16.146	3;4	2.7469000000000002E-33	10195	DP1145_12	180.66	134.92			768680000	1351	278	1274	2271;2272;2273;2274;2275;2276	3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322	3316		11	9606
KPWQLQGEVTAQK	Unmodified	1511.8096	0.80962704	40	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2.5	0.5		2	2			16.075	16.075	2;3	8.5698E-247	10064	DP1145_12	288.11	167.81			244630000	1352	40	1275	2277;2278;2279;2280	3323;3324;3325;3326;3327;3328;3329;3330;3331;3332	3326		10	9606
KQGTIFLAGPPLVK	Unmodified	1467.8813	0.88133542	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		18.172	18.172	2;3	2.7406E-55	12794	DP1145_13	198.97	158.09			880370000	1353	710	1276	2281;2282;2283	3333;3334;3335;3336;3337;3338	3333		6	9606
KQMVIDVLHPGK	Oxidation (M)	1379.7595	0.75950572	374	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	5	0					1	15.234	15.234	3	0.00027217	7196	DP1145_15	115.92	72.502			121830000	1354	374	1277	2284	3339;3340	3339	273	2	9606
KQMVIDVLHPGK	Unmodified	1363.7646	0.7645911	374	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	1	5	0					1	16.196	16.196	3	1.0022E-05	8630	DP1145_15	117.93	83.034			46481000	1355	374	1277	2285	3341;3342;3343	3342		3	9606
KQQQELHLALKQER	Unmodified	1747.9693	0.96931558	626	Q96EU6	RRP36	Ribosomal RNA processing protein 36 homolog	yes	yes	0	0	2	4	0				1		14.286	14.286	4	0.022157	6268	DP1145_14	111.12	65.291			8101500	1356	626	1278	2286	3344	3344		1	9606
KQQSIAGSADSKPIDVSR	Unmodified	1885.9858	0.9857535	435	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	2	4	0				1		14.348	14.348	4	0.0095066	6383	DP1145_14	146.27	102.96			10564000	1357	435	1279	2287	3345	3345		1	9606
KQVVNIPSFIVR	Unmodified	1398.8347	0.83471958	286	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	18.592	18.592	3	0.0002885	12445	DP1145_15	127.87	92.907			64174000	1358	286	1280	2288	3346;3347	3346		2	9606
KRDWEAIASR	Unmodified	1230.6469	0.64691881	299	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	2	4	0				1		15.185	15.185	3	0.022664	7615	DP1145_14	97.452	42.844			16206000	1359	299	1281	2289	3348	3348		0	9606
KREELSNVLAAMR	Oxidation (M)	1531.8141	0.81406049	786	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	2	5	0					1	15.375	15.375	3	0.018713	7536	DP1145_15	85.973	52.384			78324000	1360	786	1282	2290	3349;3350	3350	550	2	9606
KSAEFLLHMLK	Oxidation (M)	1331.7271	0.72714296	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	1	4.5	0.5				1	1	16.41	16.41	3	2.2903E-11	8838	DP1145_15	155.53	99.812			166730000	1361	198	1283	2291;2292	3351;3352;3353	3353	164	3	9606
KSAEFLLHMLK	Unmodified	1315.7322	0.73222834	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	18.106	18.106	3	0.00074996	11799	DP1145_15	105.13	61.837			25109000	1362	198	1283	2293	3354	3354		1	9606
KSDVEAIFSK	Unmodified	1122.5921	0.59208927	139	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		16.568	16.568	2	9.9945E-06	9803	DP1145_14	141.88	57.311			0	1363	139	1284	2294	3355	3355		1	9606
KSEDGTPAEDGTPAATGGSQPPSMGR	Oxidation (M)	2516.1085	0.10852377	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	1	2	0.707	1	2	1			14.153	14.153	3	3.2172E-39	7149	DP1145_12	192.99	162.89			9347500	1364	663	1285	2295;2296;2297;2298	3356;3357;3358;3359;3360	3357	491	5	9606
KSFNDDAMLIEK	Oxidation (M)	1425.681	0.68098063	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3.33	0.471			2	1		16.022	16.022	2;3	3.0151E-11	9395	DP1145_13	160.86	106.25			645770000	1365	647	1286	2299;2300;2301	3361;3362;3363;3364;3365	3361	477	5	9606
KSFNDDAMLIEK	Unmodified	1409.6861	0.68606601	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			16.878	16.878	2	2.7954000000000003E-121	10722	DP1145_13	266.93	174.09			69959000	1366	647	1286	2302	3366	3366		1	9606
KSGVSDHWALDDHHALHLTR	Unmodified	2294.1305	0.13046068	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.25	0.433			3	1		16.018	16.018	3;4;5	0.00023813	9266	DP1145_13	124.2	106.64			571330000	1367	710	1287	2303;2304;2305;2306	3367;3368;3369;3370;3371	3367		4	9606
KSLVMHTPPVLK	Oxidation (M)	1364.785	0.78499219	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2.5	0.5		1	1			14.468	14.468	3	0.0063845	7581	DP1145_12	85.522	12.99			59681000	1368	278	1288	2307;2308	3372;3373	3372	213	2	9606
KSNVESALSHGLK	Unmodified	1368.7361	0.73612775	548	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		1				14.867	14.867	3	0.00081607	8229	DP1145_12	118.24	88.916			11242000	1369	548	1289	2309	3374	3374		1	9606
KSPLAQDSPSQGSPALYR	Unmodified	1900.9643	0.96428978	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	1	2.5	0.5		1	1			16.043	16.043	3	1.04E-10	10035	DP1145_12	159.4	129.27			134090000	1370	534	1290	2310;2311	3375;3376;3377;3378;3379	3377		5	9606
KTEELEEESFPER	Unmodified	1621.7471	0.74714594	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		2				16.078	16.078	2;3	2.0627E-68	10083	DP1145_12	212.09	135.16			25904000	1371	772	1291	2312;2313	3380;3381;3382	3380		3	9606
KTSSLDPNDQVAMGR	Oxidation (M)	1633.773	0.77298354	734	Q9NY61	AATF	Protein AATF	yes	yes	0	1	1	3	0			1			14.238	14.238	3	0.015171	6801	DP1145_13	71.98	44.64			44765000	1372	734	1292	2314	3383	3383	526	1	9606
KTTHFVEGGDAGNREDQINR	Unmodified	2243.0679	0.067920004	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	4	0				3		13.984	13.984	3;4;5	0.0011442	5934	DP1145_14	145.82	106.47			146200000	1373	195	1293	2315;2316;2317	3384;3385;3386	3386		1	9606
KTVTAMDVVYALK	Oxidation (M)	1453.7851	0.78505177	370	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	17.792	17.792	2;3	0.00091249	11179	DP1145_15	115.57	66.109			98998000	1374	370	1294	2318;2319	3387;3388	3388	269	2	9606
KTVTAMDVVYALK	Unmodified	1437.7901	0.79013715	370	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.19	19.19	3	0.00095644	13207	DP1145_15	100.73	66.967			23723000	1375	370	1294	2320	3389	3389		1	9606
KTWMFGLPFCK	Oxidation (M)	1429.6886	0.68864897	557	Q7Z602	GPR141	Probable G-protein coupled receptor 141	yes	yes	0	1	1	1	0	1					21.752	21.752	2	0.036473	16748	DP1145_11	71.501	10.983			8256400	1376	557	1295	2321	3390	3390	421	1	9606
KVACIGAWHPAR	Unmodified	1364.7136	0.71355858	257	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	1	1	0	1					14.968	14.968	3	0.002651	6298	DP1145_11	81.625	40.9			27360000	1377	257	1296	2322	3391	3391		1	9606
KVDVEEEFFALR	Unmodified	1480.7562	0.75619449	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.33	0.471		2	1			19.845	19.845	2;3	6.8285E-10	15987	DP1145_12	161.93	121.97			348010000	1378	278	1297	2323;2324;2325	3392;3393;3394	3393		2	9606
KVDVEEEFFALRK	Unmodified	1608.8512	0.8511575	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				18.477	18.477	3	0.011469	13831	DP1145_12	102.33	76.1			84251000	1379	278	1298	2326	3395	3395		0	9606
KVEAPETNIDKTPK	Unmodified	1568.841	0.84098675	77	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	2	3	0.816		1	1	1		13.747	13.747	3	8.3798E-68	6684	DP1145_12	219.97	165.57			8380800	1380	77	1299	2327;2328;2329	3396;3397;3398;3399	3397		3	9606
KVEQPVIEEPALKR	Unmodified	1634.9356	0.93555583	509	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	2	4	0				1		15.306	15.306	3	0.0018561	7902	DP1145_14	145.61	113.18			15098000	1381	509	1300	2330	3400	3400		0	9606
KVEWTSDTVDNEHMGR	Oxidation (M)	1918.8479	0.84793939	75	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	1	5	0					1	14.766	14.766	4	0.021585	6541	DP1145_15	57.788	40.71			36117000	1382	75	1301	2331	3401	3401	54	1	9606
KVEWTSDTVDNEHMGR	Unmodified	1902.853	0.85302477	75	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	0	1	5	0					2	15.61	15.61	3;4	0.0045132	7733	DP1145_15	112.03	86.423			22685000	1383	75	1301	2332;2333	3402;3403	3402		1	9606
KVEWTSDTVDNEHMGRR	Oxidation (M)	2074.9491	0.94905042	75	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	2	5	0					1	14.116	14.116	4	0.029876	5630	DP1145_15	68.173	45.738			39816000	1384	75	1302	2334	3404	3404	54	1	9606
KVLQLLR	Unmodified	868.58582	0.5858221	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.927	15.927	2	4.3981E-14	8790	DP1145_14	150.07	25.744			0	1385	195	1303	2335	3405	3405		1	9606
KVLSPTAAKPSPFEGK	Unmodified	1655.9247	0.9246568	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	2	2.5	0.5		1	1			14.762	14.762	3	0.0041052	8103	DP1145_12	123.08	87.27			41502000	1386	644	1304	2336;2337	3406;3407	3406		0	9606
KVMLALPSVR	Oxidation (M)	1128.6689	0.6688998	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	1	4	0				1		16.859	16.859	2	0.022549	10287	DP1145_14	82.287	29.571			62591000	1387	499	1305	2338	3408	3408	377	0	9606
KVNNADDFPNLFR	Unmodified	1548.7685	0.76849051	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				18.666	18.666	2;3	0	12045	DP1145_11	307.97	235.73			655850000	1388	441	1306	2339;2340;2341	3409;3410;3411;3412	3409		4	9606
KVNPAAALEELEKIEK	Unmodified	1780.9935	0.99346464	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	2	2	0		1				19.377	19.377	3	0.026758	15155	DP1145_12	92.38	73.967			15719000	1389	673	1307	2342	3413	3413		1	9606
KVPQVSTPTLVEVSR	Unmodified	1638.9305	0.93047046	12	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	1	2.83	1.07	1	1	2	2		17.07	17.07	2;3	4.3642999999999995E-195	10620	DP1145_14	235.93	212.34		+	1883799999.9999998	1390	12	1308	2343;2344;2345;2346;2347;2348	3414;3415;3416;3417;3418;3419;3420;3421;3422;3423	3419		10	9606
KVTQLDLDGPK	Unmodified	1212.6714	0.67140222	453	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	1	4	0				1		15.4	15.4	2	1.8892E-32	7900	DP1145_14	194.12	116.8			45215000	1391	453	1309	2349	3424	3424		1	9606
KVVNPLFEK	Unmodified	1072.6281	0.62808085	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	3	1.41	1			2		15.905	15.905	2	3.7162E-28	8804	DP1145_14	177.7	97.246			234830000	1392	366	1310	2350;2351;2352	3425;3426;3427;3428	3427		4	9606
KYDAFLASESLIK	Unmodified	1483.7922	0.79224564	379	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	5	0					1	18.823	18.823	2	0.01563	12777	DP1145_15	113.95	58.593			5076200	1393	379	1311	2353	3429	3429		1	9606
LAAAEGLEPK	Unmodified	997.54441	0.5444108	265	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4.5	0.5				1	1	15.604	15.604	2	3.4462999999999997E-28	8276	DP1145_14	180.87	101.42			568450000	1394	265	1312	2354;2355	3430;3431;3432;3433	3431		4	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK	Unmodified	3722.1951	0.19506631	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		18.262	18.262	3	6.623899999999999E-38	12657	DP1145_14	167.92	167.29			204960000	1395	134	1313	2356	3434;3435	3434		2	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK	Unmodified	4117.4483	0.44832088	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		17.767	17.767	3;4	3.6219E-24	11914	DP1145_14	130.53	130.53			1429900000	1396	134	1314	2357;2358	3436;3437	3437		2	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK	Unmodified	4245.5433	0.5432839	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	3.67	0.471			1	2		16.765	16.765	3;4	2.43E-22	10118	DP1145_14	129.53	122.16			7951299999.999999	1397	134	1315	2359;2360;2361	3438;3439;3440;3441;3442;3443;3444	3440		7	9606
LAAFGQLHK	Unmodified	983.55525	0.55525025	437	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	3	0			1			15.541	15.541	2	0.030141	8721	DP1145_13	79.451	35.004			14057000	1398	437	1316	2362	3445	3445		1	9606
LAASIAPEIYGHEDVKK	Unmodified	1839.9731	0.97306355	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	3	0			1			16.394	16.394	3	0.041522	9884	DP1145_13	115.04	77.671			36393000	1399	240	1317	2363	3446	3446		0	9606
LAATNALLNSLEFTK	Unmodified	1604.8774	0.87737225	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				21.148	21.148	2	1.1159E-103	17936	DP1145_12	227.48	120.87			11577000	1400	484	1318	2364	3447;3448;3449	3448		3	9606
LAAVQLLQFLAPK	Unmodified	1410.8599	0.8598717	733	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	3	1		1		1		23.25	23.25	2	0.0025017	20923	DP1145_12	107.15	79.825			2742500	1401	733	1319	2365;2366	3450;3451;3452	3451		3	9606
LADILSPR	Unmodified	883.51272	0.51271674	642	Q96PE2	ARHGEF17	Rho guanine nucleotide exchange factor 17	yes	yes	0	0	0	5	0					1	17.692	17.692	1	0.025605	11103	DP1145_15	95.793	28.758			24783000	1402	642	1320	2367	3453	3453		1	9606
LAEALYIADRK	Unmodified	1261.703	0.7030367	457	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	1	3	0			1			16.477	16.477	2	0.040092	10009	DP1145_13	123.63	71.63			18067000	1403	457	1321	2368	3454	3454		0	9606
LAEQVSSYNESKR	Unmodified	1509.7423	0.74233534	574	Q8IXQ4	GPALPP1	GPALPP motifs-containing protein 1	yes	yes	0	0	1	4	0				1		14.186	14.186	3	0.0199	6229	DP1145_14	67.118	42.183			3628500	1404	574	1322	2369	3455	3455		1	9606
LAESLLALSQQEELADLPK	Unmodified	2067.11	0.10995097	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	3	1		1		1		21.365	21.365	2	2.2555E-204	18283	DP1145_12	266.89	205.86			17599000	1405	673	1323	2370;2371	3456;3457	3456		1	9606
LAGANPAVITCDELLLGHEK	Unmodified	2120.0936	0.093589394	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.343	19.343	3	1.1299E-07	13158	DP1145_11	153.68	118.19			11858000	1406	400	1324	2372	3458	3458		1	9606
LALDLEIATYR	Unmodified	1276.7027	0.70270235	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	0			1			20.379	20.379	2	0.0012202	16062	DP1145_13	105.4	0		+	17970000	1407	13	1325	2373	3459	3459		1	9606
LALFNPDVCWDR	Unmodified	1504.7133	0.71328381	37	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	5	0					1	21.039	21.039	2	0.00013522	15905	DP1145_15	132.88	92.151			45172000	1408	37	1326	2374	3460;3461;3462	3460		3	9606
LALKEDKFPR	Unmodified	1215.6976	0.69755739	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	2	2	0		1				15.068	15.068	3	1.8792E-07	8523	DP1145_12	145.72	87.024			11241000	1409	663	1327	2375	3463;3464	3463		2	9606
LAQALQEDDFGVAWVEAFAKPVPQVDEAETR	Unmodified	3428.6888	0.68884979	720	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			22.84	22.84	3	2.0935E-10	19744	DP1145_13	84.03	71.997			13415000	1410	720	1328	2376	3465	3465		1	9606
LAQEGIYTLYPFINSR	Unmodified	1883.9781	0.97814893	427	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				21.742	21.742	2	3.6324999999999996E-87	18857	DP1145_12	218.94	176.31			5351200	1411	427	1329	2377	3466;3467;3468	3468		3	9606
LAQEPLGLEVDQFLEDVR	Unmodified	2070.0633	0.063335123	738	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	0	3	0			1			23.634	23.634	2	3.3262E-24	20776	DP1145_13	176.56	123.18			18548000	1412	738	1330	2378	3469;3470	3469		2	9606
LAQFIGNR	Unmodified	917.5083	0.50830006	41	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			16.288	16.288	2	0.008387	9811	DP1145_13	103.29	55.112			39495000	1413	41	1331	2379	3471	3471		1	9606
LAQTYMDKLSKHGQQANK	Oxidation (M)	2076.0422	0.042222526	607	Q92624	APPBP2	Amyloid protein-binding protein 2	yes	yes	0	1	2	5	0					1	21.844	21.844	3	0.040529	16967	DP1145_15	66.674	38.691			0	1414	607	1332	2380	3472	3472	449	1	9606
LAQVSPELLLASVR	Unmodified	1494.877	0.87697832	59	O43592	XPOT	Exportin-T	yes	yes	0	0	0	2	0		1				21.31	21.31	2	1.4679E-15	18173	DP1145_12	169.82	117.57			11539000	1415	59	1333	2381	3473;3474;3475;3476	3475		4	9606
LASTNSSVLGADLPSSMKEK	Oxidation (M)	2050.0252	0.025235058	451	Q13428	TCOF1	Treacle protein	yes	yes	0	1	1	2	0		1				16.375	16.375	3	0.0070951	10663	DP1145_12	81.639	45.512			52799000	1416	451	1334	2382	3477	3477	343	1	9606
LASVLVSDWMAVIR	Oxidation (M)	1574.849	0.84904901	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2.5	0.5		1	1			21.91	21.91	2	0.001376	19076	DP1145_12	138.76	91.535			20679000	1417	644	1335	2383;2384	3478;3479;3480	3478	467	2	9606
LASVLVSDWMAVIR	Unmodified	1558.8541	0.85413439	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	3	0			1			23.308	23.308	2	0.01116	20385	DP1145_13	80.979	37.209			21229000	1418	644	1335	2385	3481	3481		1	9606
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK	Unmodified	3273.6841	0.68409876	126	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	2	5	0					1	16.286	16.286	4	3.3788E-16	8859	DP1145_15	88.194	73.148			135890000	1419	126	1336	2386	3482;3483	3482		2	9606
LASYLDKVR	Unmodified	1063.6026	0.60259438	18;5;15;16	P02533;CON__P02533;CON__Q9QWL7;CON__Q04695;Q04695;P19012;CON__A2A4G1;CON__P19012;CON__Q99456;Q99456;CON__P13645;P13645;CON__P08727;P08727;CON__P19001;CON__P08779;P08779	KRT14;KRT17;KRT15;KRT12;KRT10;KRT19;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 16	no	no	0	0	1	1	0	1					15.794	15.794	2	0.012458	7636	DP1145_11	110.12	68.893		+	47243000	1420	5;18;15;16	1337	2387	3484	3484		1	9606
LATLLGLQAPPTR	Unmodified	1349.8031	0.8030851	469	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				19.374	19.374	2	0.0036642	15264	DP1145_12	147.62	74.744			0	1421	469	1338	2388	3485	3485		1	9606
LATQSNEITIPVTFESR	Unmodified	1904.9844	0.98435652	117	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	4	0				1		19.761	19.761	2	0	14773	DP1145_14	351.52	278.99			195360000	1422	117	1339	2389	3486	3486		0	9606
LAVEEFVHATSEGEAPGGCEGR	Unmodified	2301.0332	0.033173982	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	0.816		1	1	1		18.478	18.478	2;3	0.0013776	13256	DP1145_13	138.28	107.86			696920000	1423	520	1340	2390;2391;2392	3487;3488;3489	3488		2	9606
LAVNMVPFPR	Oxidation (M)	1158.6219	0.62194961	394;137;464;113;454;669;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB3;TUBB1;TUBB6	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	1	0	3	1.41	1	1	1	1	1	18.293	18.293	2	1.5579E-16	12540	DP1145_14	159.2	104.59			2137299999.9999998	1424	113;137;394;464;514;454;669	1341	2393;2394;2395;2396;2397	3490;3491;3492;3493;3494;3495;3496;3497;3498;3499	3496	70	10	9606
LAVNMVPFPR	Unmodified	1142.627	0.62703499	394;137;464;113;454;669;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB3;TUBB1;TUBB6	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	0	3.5	0.5			1	1		19.47	19.47	2	2.1729E-57	14842	DP1145_13	207.6	152.83			1302800000	1425	113;137;394;464;514;454;669	1341	2398;2399	3500;3501;3502	3500		3	9606
LCLISTFLEDGIR	Unmodified	1535.8018	0.80176447	48	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	1	0	1					22.643	22.643	2	5.2104E-11	18003	DP1145_11	163.38	108.32			5528600	1426	48	1342	2400	3503;3504	3504		2	9606
LCNLEEGSPGSGTYTR	Unmodified	1739.7785	0.77846285	781	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	5	0					1	16.295	16.295	2	0.013527	8941	DP1145_15	79.82	37.578			22075000	1427	781	1343	2401	3505	3505		1	9606
LCPNSTGAEIR	Unmodified	1216.587	0.58702067	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3	0			1			14.838	14.838	2	0.00089419	7606	DP1145_13	107.57	40.892			19278000	1428	248	1344	2402	3506;3507	3507		2	9606
LDGLVETPTGYIESLPR	Unmodified	1858.9676	0.96764382	325	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3	0			1			20.779	20.779	2	1.3493E-172	16729	DP1145_13	254.18	192.59			43178000	1429	325	1345	2403	3508;3509	3508		2	9606
LDHKFDLMYAK	Oxidation (M)	1395.6857	0.68567208	393;547;662	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	1	3	0			1			15.925	15.925	3	0.022043	9236	DP1145_13	75.566	50.498			0	1430	393;547;662	1346	2404	3510	3510	292	1	9606
LDHKFDLMYAK	Unmodified	1379.6908	0.69075746	393;547;662	P68363;P68366;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	3	0			1			16.777	16.777	3	1.1659E-09	10530	DP1145_13	153.54	109.58			769350000	1431	393;547;662	1346	2405	3511	3511		0	9606
LDKAQIHDLVLVGGSTR	Unmodified	1821.0108	0.010846043	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			3			17.555	17.555	2;3;4	7.6658E-05	11899	DP1145_13	146.86	119.12			139820000	1432	156	1347	2406;2407;2408	3512;3513;3514;3515	3513		3	9606
LDKSQIHDIVLVGGSTR	Unmodified	1837.0058	0.005760665	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			2			17.167	17.167	3;4	0.0013134	11377	DP1145_13	118.5	86.726			143200000	1433	161	1348	2409;2410	3516;3517;3518;3519	3517		3	9606
LDLAGTLPGSK	Unmodified	1070.5972	0.59717465	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				18.068	18.068	2	3.3019E-13	13249	DP1145_12	157.34	106.01			181840000	1434	278	1349	2411;2412	3520;3521;3522	3522		3	9606
LDLLEEK	Unmodified	858.46985	0.46984887	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.565	17.565	2	8.482E-25	10490	DP1145_11	164.89	0			317600000	1435	441	1350	2413	3523;3524	3523		2	9606
LDLLGNLPGSK	Unmodified	1125.6394	0.63937381	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0.816	1	1	1			19.697	19.697	2	0.00011842	15892	DP1145_12	113.93	59.721			219100000	1436	278	1351	2414;2415;2416	3525;3526;3527	3526		3	9606
LDLPGNLPGSK	Unmodified	1109.6081	0.60807369	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			18.177	18.177	2	0.0013658	12735	DP1145_13	104.42	62.975			127970000	1437	278	1352	2417;2418	3528;3529	3529		2	9606
LDLTENLTGSK	Unmodified	1189.619	0.6190323	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2.5	0.5		1	1			17.977	17.977	2	1.3185E-43	13152	DP1145_12	198.61	113.45			323680000	1438	278	1353	2419;2420	3530;3531;3532	3530		3	9606
LDMDEMELVDLGDGRDK	2 Oxidation (M)	1981.8609	0.86087185	639	Q96N96	SPATA13	Spermatogenesis-associated protein 13	yes	yes	0	2	1	4	0				1		17.448	17.448	2	0.037965	11219	DP1145_14	63.944	35.712			0	1439	639	1354	2421	3533	3533	462;463	1	9606
LDNASAFQGAVISPHYDSLLVK	Unmodified	2344.2063	0.20631097	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.8	0.748	2	2	1			19.841	19.841	2;3	6.0955E-65	16052	DP1145_12	208.92	166.7			785660000	1440	164	1355	2422;2423;2424;2425;2426	3534;3535;3536;3537;3538;3539;3540;3541;3542	3539		8	9606
LDNVPHTPSSYIETLPK	Unmodified	1909.9785	0.97854286	657	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			18.178	18.178	3	0.027485	12809	DP1145_13	99.711	76.313			60671000	1441	657	1356	2427	3543	3543		0	9606
LDPAASVTGSK	Unmodified	1044.5451	0.54513908	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				15.368	15.368	2	0.0075115	8898	DP1145_12	94.409	55.633			101310000	1442	278	1357	2428	3544	3544		1	9606
LDPGSEETQTLVR	Unmodified	1443.7205	0.72053726	223	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			16.878	16.878	2	0.0019164	10734	DP1145_13	99.752	73.86			48445000	1443	223	1358	2429	3545	3545		1	9606
LDQLIYIPLPDEK	Unmodified	1555.8498	0.84976052	323	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				21.361	21.361	2	0.0083969	18266	DP1145_12	86.114	43.371			3502300	1444	323	1359	2430	3546;3547	3546		2	9606
LDQPGNLPGSNR	Unmodified	1266.6317	0.63166267	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			15.5	15.5	2	4.6887E-11	9194	DP1145_12	157.97	116.98			189360000	1445	278	1360	2431;2432;2433	3548;3549;3550;3551;3552	3550		4	9606
LDQPGNLPGSNRR	Unmodified	1422.7328	0.7327737	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.816	1	1	1			14.503	14.503	2;3	0.0012911	7041	DP1145_13	86.189	49.505			60109000	1446	278	1361	2434;2435;2436	3553;3554;3555	3555		3	9606
LDSDTLEVMRK	Unmodified	1305.6599	0.65985126	144	P08254	MMP3	Stromelysin-1	yes	yes	0	0	1	5	0					1	15.593	15.593	3	0.0062878	7787	DP1145_15	93.556	26.476			0	1447	144	1362	2437	3556	3556		1	9606
LDSELKNMQDMVEDYR	2 Oxidation (M)	2016.8769	0.87685626	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	1	0	2					16.365	16.365	2;3	0.0018046	8507	DP1145_11	132.86	109.15		+	28285000	1448	13	1363	2438;2439	3557;3558	3557	6;7	2	9606
LDSSPSVSSTLAAK	Unmodified	1361.7038	0.70382456	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	0			1			16.213	16.213	2	0.010026	9712	DP1145_13	89.403	57.874			36732000	1449	451	1364	2440	3559	3559		1	9606
LDTEQLAQR	Unmodified	1072.5513	0.55128709	561	Q86UE8	TLK2	Serine/threonine-protein kinase tousled-like 2	yes	yes	0	0	0	2	0		1				15.391	15.391	2	0.016422	9246	DP1145_12	89.752	35.977			9402900	1450	561	1365	2441	3560	3560		1	9606
LDYLGVSYGLTPR	Unmodified	1452.7613	0.76127986	689	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					20.225	20.225	2	0.020335	14463	DP1145_11	127.51	69.081			14480000	1451	689	1366	2442	3561	3561		0	9606
LEAQEQAFLAR	Unmodified	1274.6619	0.66190017	524	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	3	0			1			17.478	17.478	2	0.0002535	11818	DP1145_13	133.13	82.661			104440000	1452	524	1367	2443	3562	3562		1	9606
LEGLTDEINFLR	Unmodified	1418.7405	0.74054442	14	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3.5	0.5			1	1		21.212	21.212	2	1.9132E-23	17371	DP1145_13	179.81	119.79		+	189000000	1453	14	1368	2444;2445	3563;3564	3563		2	9606
LEGNTVGVEAAR	Unmodified	1214.6255	0.62551466	279	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	3	0			1			15.117	15.117	2	0.008046	7968	DP1145_13	118.28	56.078			0	1454	279	1369	2446	3565	3565		1	9606
LEIATLK	Unmodified	786.48511	0.485105	680	Q9BXX3	ANKRD30A	Ankyrin repeat domain-containing protein 30A	yes	yes	0	0	0	4	0				1		17.36	17.36	1	2.2453E-14	11093	DP1145_14	157.99	29.174			35510000	1455	680	1370	2447	3566	3566		0	9606
LEKEEEEDDGDLPVVAEFVDERPEEVK	Unmodified	3143.467	0.4670145	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	2	3.67	0.943			2		1	19.936	19.936	3;4	1.8194E-07	15362	DP1145_13	114.34	100.73			129740000	1456	665	1371	2448;2449;2450	3567;3568;3569;3570;3571	3567		4	9606
LELAQYR	Unmodified	891.48142	0.48141661	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			16.577	16.577	2	7.128E-08	10451	DP1145_13	137.44	15.286			194140000	1457	217	1372	2451	3572	3572		1	9606
LELPLSR	Unmodified	826.49125	0.49125301	568	Q86XN8	MEX3D	RNA-binding protein MEX3D	yes	yes	0	0	0	5	0					1	16.16	16.16	2	0.015266	8658	DP1145_15	99.384	1.7436			47866000	1458	568	1373	2452	3573	3573		1	9606
LENEIQTYR	Unmodified	1164.5775	0.57750184	18	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	0	1					15.926	15.926	2	1.9364000000000001E-122	7815	DP1145_11	241.3	145.95		+	205620000	1459	18	1374	2453	3574;3575;3576;3577	3576		4	9606
LEPKPQPPVAEATPR	Unmodified	1628.8886	0.88860564	750	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	1	3	0			1			14.948	14.948	3	0.041504	7595	DP1145_13	74.966	33.875			26589000	1460	750	1375	2454	3578	3578		0	9606
LEQEIATYR	Unmodified	1121.5717	0.57168818	5;15;16	P02533;CON__P02533;CON__Q9QWL7;CON__Q04695;CON__Q6IFX2;Q04695;P19012;CON__A2A4G1;CON__P19012;CON__Q3ZAW8;CON__Q9Z2K1;CON__Q61782;CON__Q9D312;CON__P35900;P35900;CON__Q8N1A0;Q8N1A0;CON__P08727;P08727;CON__P19001;CON__P08779;P08779	KRT14;KRT17;KRT15;KRT20;KRT222;KRT19;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 20;Keratin-like protein KRT222;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 16	no	no	0	0	0	1	0	1					16.09	16.09	2	0.00014735	7988	DP1145_11	120.15	41.384		+	0	1461	5;15;16	1376	2455	3579	3579		1	9606
LESEGSPETLTNLR	Unmodified	1544.7682	0.76821574	739	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	0	1					17.461	17.461	2	1.8972E-06	10432	DP1145_11	152.54	78.373			13545000	1462	739	1377	2456	3580	3580		1	9606
LFADAVQELLPQYK	Unmodified	1633.8716	0.87155859	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			21.931	21.931	2	1.2861E-43	18289	DP1145_13	210.95	132.3			0	1463	240	1378	2457	3581	3581		1	9606
LFDQAFGLPR	Unmodified	1162.6135	0.61349341	117	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	4	0				1		20.162	20.162	2	0.025904	15477	DP1145_14	80.455	26.961			161160000	1464	117	1379	2458	3582	3582		1	9606
LFEGNALLR	Unmodified	1031.5764	0.57637963	286	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	18.592	18.592	2	4.3842E-10	12322	DP1145_15	147.69	67.754			424210000	1465	286	1380	2459	3583	3583		1	9606
LFEYGGFPPESNYLFLGDYVDR	Unmodified	2597.2115	0.21145592	350;252	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	3.4	0.49			3	2		23.709	23.709	2;3	4.9104E-06	20292	DP1145_14	140.96	110.48			98185000	1466	252;350	1381	2460;2461;2462;2463;2464	3584;3585;3586;3587;3588;3589;3590;3591;3592;3593;3594;3595;3596;3597	3592		14	9606
LFFVGSR	Unmodified	824.45447	0.45447358	411	Q01650;Q9UM01;Q92536	SLC7A5;SLC7A7;SLC7A6	Large neutral amino acids transporter small subunit 1;Y+L amino acid transporter 1;Y+L amino acid transporter 2	yes	no	0	0	0	4	0				1		18.56	18.56	2	2.3272E-07	13001	DP1145_14	132.94	44.314			29416000	1467	411	1382	2465	3598	3598		1	9606
LFISHFLLK	Unmodified	1116.6696	0.66955173	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	1.41	1	1	1	1	1	19.769	19.769	2	3.0617999999999997E-22	16193	DP1145_12	168.23	81.762			621210000	1468	520	1383	2466;2467;2468;2469;2470	3599;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610	3601		12	9606
LFLQGPK	Unmodified	801.47487	0.47487467	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	0.829		2	1	1		16.898	16.898	1;2	0.004545	11421	DP1145_12	106.76	41.089			504190000	1469	164	1384	2471;2472;2473;2474	3611;3612;3613;3614	3612		2	9606
LFLVNNK	Unmodified	846.49634	0.49633839	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	3.5	0.5			1	1		17.219	17.219	2	0.022426	11373	DP1145_13	95.957	24.242			457980000	1470	499	1385	2475;2476	3615;3616;3617	3615		3	9606
LFQECCPHSTDR	Unmodified	1548.6449	0.64494625	347	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			14.539	14.539	3	0.0057869	7063	DP1145_13	84.605	62.214			99568000	1471	347	1386	2477	3618	3618		1	9606
LFVGGIKEDTEEHHLR	Unmodified	1878.9588	0.95881047	207	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				2		15.604	15.604	3;4	0.0046023	8623	DP1145_14	119.88	0			667820000	1472	207	1387	2478;2479	3619;3620;3621	3621		3	9606
LFVGNLPPDITEEEMR	Unmodified	1858.9135	0.91349976	493	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	3	0			1			20.28	20.28	2	0.011118	16071	DP1145_13	84.169	47.722			15569000	1473	493	1388	2480	3622	3622		1	9606
LFVSDGVPGCLPVLAAAGR	Unmodified	1898.0084	0.0084032019	328	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				21.367	21.367	2	6.2788E-07	18295	DP1145_12	154.67	120.78			1785800	1474	328	1389	2481	3623;3624	3623		2	9606
LGAGEGGEASVSPEK	Unmodified	1386.6627	0.66268803	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				14.667	14.667	2	0.00026169	7806	DP1145_12	155.47	127.27			32650000	1475	451	1390	2482	3625;3626	3625		2	9606
LGAVFNQVAFPLQYTPR	Unmodified	1920.0258	0.025767826	498	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.5	0.5	1	1				21.543	21.543	2	1.9866E-43	16408	DP1145_11	193.28	129.42			19476000	1476	498	1391	2483;2484	3627;3628;3629	3627		3	9606
LGCMLASMIFRK	Oxidation (M)	1441.7244	0.72438255	588	Q8NEV1	CSNK2A3	Casein kinase II subunit alpha 3	yes	yes	0	1	1	4	0				1		14.742	14.742	3	0.02661	6442	DP1145_14	65.278	18.292			7243900	1477	588	1392	2485	3630	3630	437	0	9606
LGEHNIDVLEGNEQFINAAK	Unmodified	2210.0968	0.096760517	4	CON__P00761			yes	yes	0	0	0	2.7	1.49	3	2	2	1	2	20.856	20.856	2;3	5.8949E-296	14307	DP1145_13	308	257.77		+	17801000000	1478	4	1393	2486;2487;2488;2489;2490;2491;2492;2493;2494;2495	3631;3632;3633;3634;3635;3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651	3642		21	
LGEYGFQNALIVR	Unmodified	1478.7882	0.78816332	12	CON__P02769			yes	yes	0	0	0	2.67	1.25	1		1	1		20.049	20.049	2	0.00066096	15341	DP1145_14	103.7	56.141		+	390180000	1479	12	1394	2496;2497;2498	3652;3653;3654;3655	3655		4	9606
LGFSEVELVQMVVDGVK	Oxidation (M)	1863.9652	0.96520098	170	P12277	CKB	Creatine kinase B-type	yes	yes	0	1	0	4	0				1		23.04	23.04	2	1.0449E-05	19494	DP1145_14	153.81	112.64			4474100	1480	170	1395	2499	3656;3657	3657	153	2	9606
LGGIPVGVVAVETR	Unmodified	1365.798	0.79799972	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.16	19.16	2	0.0081402	13000	DP1145_11	101.35	62.599			976330000	1481	441	1396	2500	3658	3658		1	9606
LGGSAVISLEGKPL	Unmodified	1339.7711	0.77111627	211	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	5	0					1	19.09	19.09	2	0.0067633	13149	DP1145_15	122.69	83.937			14964000	1482	211	1397	2501	3659	3659		1	9606
LGLPGDEVDNKVK	Unmodified	1382.7405	0.74054442	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					16.086	16.086	3	0.010986	7990	DP1145_11	72.705	50.629			28740000	1483	400	1398	2502	3660;3661	3660		2	9606
LGMSADPDNEDATDKVNK	Oxidation (M)	1934.8528	0.85275	77	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	1	1	2	0		1				14.167	14.167	3	0.041112	7198	DP1145_12	75.018	44.482			2845700	1484	77	1399	2503	3662	3662	55	0	9606
LGNPIVPLNIR	Unmodified	1204.7292	0.72919187	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.16	19.16	2	0.00040941	12874	DP1145_11	123.72	94.559			24363000	1485	400	1400	2504	3663	3663		1	9606
LGSTVFVANLDYK	Unmodified	1425.7504	0.75038083	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	4	0				1		19.335	19.335	2	0.011872	14126	DP1145_14	89.266	43.931			0	1486	310	1401	2505	3664	3664		1	9606
LGTLSALDILIK	Unmodified	1255.7751	0.77513901	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				21.969	21.969	2	0.00099235	19148	DP1145_12	153.1	84.256			15188000	1487	566	1402	2506	3665	3665		1	9606
LGTPELSTAER	Unmodified	1172.6037	0.60371659	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.75	1.48	1	1	1		1	16.067	16.067	2	1.8709E-10	7933	DP1145_11	150.27	97.864			1282100000	1488	441	1403	2507;2508;2509;2510	3666;3667;3668;3669;3670;3671;3672;3673	3666		8	9606
LGTPELSTAERK	Unmodified	1300.6987	0.69867961	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.862	14.862	3	0.00012702	5964	DP1145_11	103.21	73.89			39710000	1489	441	1404	2511	3674	3674		1	9606
LGVQTVAVYSEADR	Unmodified	1506.7678	0.7678218	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		17.919	17.919	2	4.7618E-69	12330	DP1145_13	211.46	168.75			573880000	1490	647	1405	2512;2513	3675;3676;3677;3678	3675		3	9606
LGVTNTIISHYDGR	Unmodified	1544.7947	0.79470526	280	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	3	0			1			17.578	17.578	3	0.03655	11904	DP1145_13	57.434	39.339			10674000	1491	280	1406	2514	3679	3679		1	9606
LHDSVVMVTQESDSSFLVK	Unmodified	2120.046	0.0459705	685	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					1	18.792	18.792	3	0.020911	12693	DP1145_15	99.044	71.12			26733000	1492	685	1407	2515	3680	3680		0	9606
LHFFMPGFAPLTSR	Oxidation (M)	1635.8232	0.82316861	394;137;464;113;669;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB6	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	1	0	3	0.707		1	2	1		19.825	19.825	2;3	1.7526E-09	15270	DP1145_13	161.51	101.67			1433500000	1493	113;137;394;464;514;669	1408	2516;2517;2518;2519	3681;3682;3683;3684;3685;3686;3687	3684	71	7	9606
LHFFMPGFAPLTSR	Unmodified	1619.8283	0.82825399	394;137;464;113;669;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB6	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-6 chain	no	no	0	0	0	3.5	0.5			2	2		21.062	21.062	2;3	8.242199999999999E-23	16757	DP1145_14	180.09	85.681			988860000	1494	113;137;394;464;514;669	1408	2520;2521;2522;2523	3688;3689;3690;3691;3692;3693	3692		6	9606
LHNTIVEINNHK	Unmodified	1430.763	0.7630112	727	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	2	0		1				14.252	14.252	3	0.0023219	7277	DP1145_12	100.09	79.026			0	1495	727	1409	2524	3694	3694		1	9606
LHPEMSNLDLTK	Oxidation (M)	1412.697	0.69696505	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	1	0	2	0		1				15.268	15.268	3	0.031797	8905	DP1145_12	56.956	22.57			18854000	1496	189	1410	2525	3695	3695	155	1	9606
LHPEMSNLDLTK	Unmodified	1396.7021	0.70205043	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				16.776	16.776	3	0.018328	11159	DP1145_12	120.57	86.573			23529000	1497	189	1410	2526	3696	3696		0	9606
LHTLEEEKEELAQYQK	Unmodified	1986.9898	0.98983583	765	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	2	0		1				17.075	17.075	3	0.017531	11677	DP1145_12	103.66	74.308			10180000	1498	765	1411	2527	3697	3697		0	9606
LIADVAPSAIR	Unmodified	1124.6554	0.65535823	258	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	4	0				1		17.459	17.459	2	0.0076007	11206	DP1145_14	94.309	27.958			52120000	1499	258	1412	2528	3698;3699	3698		2	9606
LIAHAGSLTNLAK	Unmodified	1307.7561	0.75613491	41	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			16.072	16.072	2	0.022991	9485	DP1145_13	72.152	43.234			66009000	1500	41	1413	2529	3700	3700		1	9606
LIALLEVLSQK	Unmodified	1225.7646	0.76457433	202	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	yes	no	0	0	0	1.5	0.5	1	1				22.391	22.391	2	0.00095712	19736	DP1145_12	107.15	54.438			4970800	1501	202	1414	2530;2531	3701;3702;3703	3702		3	9606
LIASVAGSVER	Unmodified	1100.619	0.61897272	463	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	4	0				1		16.295	16.295	2	0.035915	9336	DP1145_14	117.89	42.677			54876000	1502	463	1415	2532	3704	3704		0	9606
LIDLHSPSEIVK	Unmodified	1349.7555	0.7554662	336	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					1	17.393	17.393	2	1.5865E-11	10631	DP1145_15	163.16	121.73			76708000	1503	336	1416	2533	3705	3705		1	9606
LIETYFSK	Unmodified	999.5277	0.5276981	333	P60201	PLP1	Myelin proteolipid protein	yes	yes	0	0	0	3.33	1.25		1	1		1	17.885	17.885	2	2.5774E-09	11225	DP1145_15	139.31	39.938			268400000	1504	333	1417	2534;2535;2536	3706;3707;3708;3709	3708		4	9606
LIEVDDER	Unmodified	987.48729	0.48728985	369	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		15.704	15.704	2	0.022544	8540	DP1145_14	95.909	46.491			365280000	1505	369	1418	2537	3710	3710		1	9606
LIGEYGLR	Unmodified	919.51272	0.51271674	286	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	3	2	1				1	17.393	17.393	2	4.8222E-14	10587	DP1145_15	148.21	61.694			510720000	1506	286	1419	2538;2539	3711;3712	3712		2	9606
LIGQVHEVSSMPELLNMSR	2 Oxidation (M)	2171.0715	0.071473744	527	Q5TBA9	FRY	Protein furry homolog	yes	yes	0	2	0	3	0			1			15.437	15.437	4	0.037912	8112	DP1145_13	40.493	17.667			12995000	1507	527	1420	2540	3713	3713	405;406	1	9606
LIIVEGCQR	Unmodified	1086.5856	0.5855641	119;173	P05023;P13637;P50993;Q13733;P54707	ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2	no	no	0	0	0	1	0	1					16.455	16.455	2	0.017166	8652	DP1145_11	104.21	39.451			20708000	1508	119;173	1421	2541	3714	3714		1	9606
LILISTNGSFIR	Unmodified	1332.7765	0.776536	543	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		20.062	20.062	2	0.0427	15178	DP1145_14	97.565	36.975			29517000	1509	543	1422	2542	3715	3715		0	9606
LILPVGPAGGNQMLEQYDKLQDGSIK	Oxidation (M)	2799.4477	0.44768022	204	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	1	1	5	0					1	19.591	19.591	3	0.000468	13953	DP1145_15	68.676	37.695			21852000	1510	204	1423	2543	3716	3716	167	1	9606
LIPDGCGVK	Unmodified	957.49535	0.49535211	224	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	4.5	0.5				1	1	15.207	15.207	2	0.021142	7195	DP1145_15	85.212	42.212			137370000	1511	224	1424	2544;2545	3717;3718;3719;3720	3719		4	9606
LIPDSIGKDIEK	Unmodified	1326.7395	0.73948179	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		16.859	16.859	2	0.0047544	10361	DP1145_14	103.26	12.546			249640000	1512	339	1425	2546	3721	3721		0	9606
LISGWVSR	Unmodified	916.51305	0.51305109	46	O14980	XPO1	Exportin-1	yes	yes	0	0	0	3	0			1			17.541	17.541	2	0.037108	11800	DP1145_13	123.69	20.404			6653500	1513	46	1426	2547	3722	3722		0	9606
LISQIQPEVDRER	Unmodified	1581.8475	0.84746911	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				16.03	16.03	3	0.0017263	9955	DP1145_12	110.08	40.861			0	1514	724	1427	2548	3723	3723		1	9606
LISQIVSSITASLR	Unmodified	1486.8719	0.87189295	393;662	P68363;P68366;Q9H853;Q9BQE3	TUBA1B;TUBA4A;TUBA4B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain	no	no	0	0	0	2.75	1.09	1		2	1		22.956	22.956	2;3	8.7738E-43	19403	DP1145_14	231.05	164.62			199880000	1515	393;662	1428	2549;2550;2551;2552	3724;3725;3726;3727;3728;3729;3730	3729		7	9606
LISSDGHEFIVK	Unmodified	1343.7085	0.70851601	496	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	5	0					1	16.791	16.791	3	0.010634	9971	DP1145_15	75.416	36.237			97882000	1516	496	1429	2553	3731;3732	3732		2	9606
LITEDVQGK	Unmodified	1001.5393	0.53932542	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		15.096	15.096	2	0.012487	7530	DP1145_14	125.81	62.508			63473000	1517	339	1430	2554	3733	3733		0	9606
LITKPSEGTTLR	Unmodified	1314.7507	0.75071518	301	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	1	3	0			1			14.692	14.692	3	0.0089563	7333	DP1145_13	78.903	47.754			0	1518	301	1431	2555	3734	3734		1	9606
LITPAVVSER	Unmodified	1083.6288	0.62880913	375	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	16.978	16.978	2	0.013686	9916	DP1145_15	92.051	42.515			90316000	1519	375	1432	2556	3735;3736	3736		2	9606
LITQTFSHHNQLAQK	Unmodified	1764.9271	0.92711641	767	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		14.987	14.987	3	0.00071889	7347	DP1145_14	125.03	86.633			64184000	1520	767	1433	2557	3737	3737		1	9606
LKETGYVVERPSTTK	Unmodified	1706.9203	0.9202997	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	1.67	0.471	1	2				14.368	14.368	3;4	6.1682E-14	7499	DP1145_12	167.03	108.99			41012000	1521	735	1434	2558;2559;2560	3738;3739;3740;3741	3740		4	9606
LKGQDPGAPQLQSESKPPK	Unmodified	2004.064	0.064003825	524	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	2	3.67	0.471			1	2		14.131	14.131	3;4	1.7902000000000002E-57	6102	DP1145_14	203.56	169.07			33722000	1522	524	1435	2561;2562;2563	3742;3743;3744	3744		1	9606
LKLEPHEGLLLR	Unmodified	1416.8453	0.84528426	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	3	0			1			16.978	16.978	3	0.0069651	10991	DP1145_13	116.74	77.731			77689000	1523	142	1436	2564	3745	3745		1	9606
LKPDPNTLCDEFK	Unmodified	1575.7603	0.76029359	12	CON__P02769			yes	yes	0	0	1	3	0			1			17.378	17.378	3	0.0036724	11523	DP1145_13	85.45	34.316		+	23518000	1524	12	1437	2565	3746	3746		1	9606
LKPPVHYNGPSK	Unmodified	1335.7299	0.72992016	326	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	2	0		1				13.967	13.967	3	0.013163	6970	DP1145_12	124.39	78.787			4580000	1525	326	1438	2566	3747	3747		0	9606
LKPYVSYLAPESEETPLTAAQLFSEAVAPAIEK	Unmodified	3561.8494	0.84943275	573	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	1	5	0					1	23.147	23.147	3	8.0391E-13	18810	DP1145_15	108.07	91.823			5843600	1526	573	1439	2567	3748	3748		1	9606
LKSDVALEVPPKR	Unmodified	1450.8508	0.85076357	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	2	2	0		1				14.767	14.767	3	0.025641	8003	DP1145_12	85.536	52.969			8278700	1527	724	1440	2568	3749	3749		0	9606
LKVPEWVDTVK	Unmodified	1312.7391	0.73908786	256	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	1	5	0					1	18.324	18.324	3	0.006072	12037	DP1145_15	81.525	50.667			22472000	1528	256	1441	2569	3750;3751	3750		2	9606
LKVPPAINQFTQALDR	Unmodified	1810.0101	0.010117761	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		20.062	20.062	3	2.0046E-43	15172	DP1145_14	194.67	124.2			137120000	1529	366	1442	2570	3752;3753;3754	3752		3	9606
LKYENEVALR	Unmodified	1233.6717	0.67173657	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	1	0	2					15.794	15.794	2;3	9.654E-05	7598	DP1145_11	113.44	75.937		+	251740000	1530	18	1443	2571;2572	3755;3756;3757	3757		3	9606
LLAAVEAFYSPPSHDRPR	Unmodified	2025.0432	0.043208804	570	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	1	2	0		1				18.349	18.349	4	0.03812	13527	DP1145_12	60.549	43.528			9378700	1531	570	1444	2573	3758	3758		1	9606
LLACIASR	Unmodified	902.50077	0.50077184	354	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	4	0				1		16.392	16.392	2	0.015467	9516	DP1145_14	104.37	50.656			0	1532	354	1445	2574	3759	3759		1	9606
LLDEEISR	Unmodified	973.50803	0.50802529	643	Q96PU8	QKI	Protein quaking	yes	yes	0	0	0	4	0				1		16.437	16.437	2	0.014253	9589	DP1145_14	104.75	19.831			0	1533	643	1446	2575	3760	3760		1	9606
LLDSLEPPGEPGPSTNIPENDTVDGREEK	Unmodified	3104.4786	0.47858224	609	Q92734	TFG	Protein TFG	yes	yes	0	0	1	3	0			1			18.58	18.58	3	3.8617E-05	13645	DP1145_13	62.404	46.59			30294000	1534	609	1447	2576	3761;3762	3762		2	9606
LLDSVPPTAISHFK	Unmodified	1523.8348	0.83477916	721	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1.5	0.5	1	1				17.88	17.88	2;3	0.015425	11091	DP1145_11	85.958	32.202			18806000	1535	721	1448	2577;2578	3763;3764	3763		2	9606
LLEAFHNQGPVIK	Unmodified	1464.8089	0.80889876	771	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	4	0				1		17.16	17.16	3	0.015644	10941	DP1145_14	67.08	29.085			50232000	1536	771	1449	2579	3765	3765		1	9606
LLEEALLR	Unmodified	955.57023	0.57023162	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.689	18.689	2	7.8652E-23	12181	DP1145_11	186.67	83.388			0	1537	400	1450	2580	3766	3766		1	9606
LLEPVLLLGK	Unmodified	1093.7111	0.71108219	356	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					2	20.98	20.98	2	3.3048E-05	15836	DP1145_15	136.27	69.839			0	1538	356	1451	2581;2582	3767;3768	3768		2	9606
LLETECPQYIR	Unmodified	1420.7021	0.70205043	121	P05109	S100A8	Protein S100-A8;Protein S100-A8, N-terminally processed	yes	yes	0	0	0	5	0					1	17.414	17.414	2	0.01679	10566	DP1145_15	95.358	39.897			0	1539	121	1452	2583	3769	3769		1	9606
LLETESFQMNR	Unmodified	1366.6551	0.65510023	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.061	18.061	2	1.8624E-07	11377	DP1145_11	143.7	102.01			124080000	1540	441	1453	2584	3770;3771	3770		2	9606
LLETTDRPDGHQNNLR	Unmodified	1877.9344	0.93438664	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	2.33	0.471		2	1			14.462	14.462	3;4	0.00058483	7030	DP1145_13	113.35	90.38			69222000	1541	484	1454	2585;2586;2587	3772;3773;3774;3775;3776	3775		5	9606
LLFWGGSYGGAGQPQLISR	Unmodified	2006.0374	0.037395144	24	CON__Q3ZBS7			yes	yes	0	0	0	3	0			1			21.536	21.536	2	0.026326	17840	DP1145_13	74.649	36.069		+	7296700	1542	24	1455	2588	3777	3777		1	9606
LLGAALPLLTK	Unmodified	1108.722	0.72198123	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				20.466	20.466	2	0.00034464	16946	DP1145_12	118.71	94.756			14773000	1543	663	1456	2589	3778	3778		1	9606
LLGASELPIVTPALR	Unmodified	1548.9239	0.92392852	311	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			20.779	20.779	2	0.00076343	16706	DP1145_13	177.44	150.47			69882000	1544	311	1457	2590	3779	3779		1	9606
LLGGHNEDLPSNR	Unmodified	1420.7059	0.70589025	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	4.5	0.5				2	2	15.016	15.016	2;3	2.91E-06	6914	DP1145_15	152.38	100.45			213310000	1545	665	1458	2591;2592;2593;2594	3780;3781;3782;3783;3784	3782		5	9606
LLGQFTLIGIPPAPR	Unmodified	1591.945	0.94499831	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		21.678	21.678	2;3	0.00083028	18875	DP1145_13	137.89	104.35			180830000	1546	255	1459	2595;2596;2597	3785;3786;3787;3788	3786		3	9606
LLHYLGHVMVNGPTTPIPVK	Oxidation (M)	2201.2031	0.20308026	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1.67	0.471	1	2				17.875	17.875	3;4	0.005593	12981	DP1145_12	83.418	49.793			258210000	1547	164	1460	2598;2599;2600	3789;3790;3791;3792;3793;3794	3790	143	6	9606
LLHYLGHVMVNGPTTPIPVK	Unmodified	2185.2082	0.20816564	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.707	1	2	1			18.583	18.583	3;4	2.0613E-05	14248	DP1145_12	145.69	116			111780000	1548	164	1460	2601;2602;2603;2604	3795;3796;3797;3798;3799;3800	3797		6	9606
LLIEMEQR	Oxidation (M)	1046.543	0.54303059	170	P12277	CKB	Creatine kinase B-type	yes	yes	0	1	0	1	0	1					15.953	15.953	2	1.1774E-06	7862	DP1145_11	134.06	50.68			0	1549	170	1461	2605	3801	3801	154	1	9606
LLKPECVLDK	Unmodified	1213.674	0.67404476	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	1	0	1					16.257	16.257	3	0.030649	8339	DP1145_11	70.552	32.996			10743000	1550	605	1462	2606	3802	3802		1	9606
LLLEDLVK	Unmodified	941.57973	0.57973367	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.349	20.349	2	2.3872999999999997E-28	14630	DP1145_11	173.93	68.733			239080000	1551	441	1463	2607;2608;2609;2610	3803;3804;3805;3806;3807;3808	3804		6	9606
LLLGAGAVAYGVR	Unmodified	1258.7398	0.73975656	655	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		19.16	19.16	2	0.031438	14032	DP1145_14	83.647	32.581			32804000	1552	655	1464	2611	3809	3809		1	9606
LLLLGAGESGK	Unmodified	1056.6179	0.61791009	3	P11488;P63096;P19087;P09471;P08754;A8MTJ3;P04899;P38405;Q5JWF2	GNAT1;GNAI1;GNAT2;GNAO1;GNAI3;GNAT3;GNAI2;GNAL;GNAS	Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	yes	no	0	0	0	2	0		1				18.176	18.176	2	1.9981E-07	13455	DP1145_12	143.37	0			46569000	1553	3	1465	2612	3810	3810		1	9606
LLLPGELAK	Unmodified	952.59572	0.59571809	135;73	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814;A0A2R8Y619;Q96A08;Q8N257;Q16778;P33778;P23527;P06899	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK;HIST1H2BA;HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-A;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J	no	no	0	0	0	3.75	1.64	1			1	2	18.526	18.526	1;2	1.9755E-05	12300	DP1145_15	125.31	29.962			2313300000	1554	73;135	1466	2613;2614;2615;2616	3811;3812;3813;3814;3815;3816;3817	3814		7	9606
LLLPVAEYFSGVQLPPHLSPFVTEK	Unmodified	2780.5153	0.5152895	39	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			23.086	23.086	3	0.042086	19922	DP1145_13	40.669	14.43			1836500	1555	39	1467	2617	3818	3818		1	9606
LLLPWLEAR	Unmodified	1109.6597	0.65971533	408	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					22.057	22.057	2	0.011086	17151	DP1145_11	96.253	45.646			7110100	1556	408	1468	2618	3819	3819		1	9606
LLLQVQHASK	Unmodified	1135.6713	0.67134264	122;168	P05141;P12236;P12235	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	2.5	1.5	1			1		15.115	15.115	2	2.1336E-17	6565	DP1145_11	161.79	53.702			88764000	1557	122;168	1469	2619;2620	3820;3821	3820		2	9606
LLNCQEFAVDLEHHSYR	Unmodified	2129.9953	0.99527233	412	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				18.498	18.498	4	0.0085383	13954	DP1145_12	85.576	62.35			8672600	1558	412	1470	2621	3822	3822		1	9606
LLPPLLQIVCK	Unmodified	1292.789	0.78901494	595	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	2	0		1				21.772	21.772	2	0.016243	18803	DP1145_12	84.916	72.869			1568400	1559	595	1471	2622	3823;3824	3823		2	9606
LLPVLLSTAQEADPEVR	Unmodified	1850.0149	0.014928368	595	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	2	0		1				20.649	20.649	2	0.0030515	17337	DP1145_12	125.82	82.213			3518800	1560	595	1472	2623	3825	3825		1	9606
LLQALAQYQNHLQEQPR	Unmodified	2049.0756	0.075571565	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				18.176	18.176	3	0.010544	13437	DP1145_12	121.45	89.769			34757000	1561	663	1473	2624	3826	3826		0	9606
LLQDFFNGK	Unmodified	1080.5604	0.56039521	161;187	P11142;P54652;P17066	HSPA8;HSPA2;HSPA6	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6	no	no	0	0	0	3	0			1			19.68	19.68	2	3.302E-18	15055	DP1145_13	162.31	68.299			217810000	1562	161;187	1474	2625	3827	3827		1	9606
LLQDFFNGR	Unmodified	1108.5665	0.56654322	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			19.881	19.881	2	5.371E-13	15401	DP1145_13	151.29	79.414			255720000	1563	156	1475	2626	3828;3829;3830	3828		3	9606
LLQDLQLGDEEDAR	Unmodified	1613.7897	0.78967946	482	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					18.891	18.891	2	0.0013915	12533	DP1145_11	126.12	68.333			9299600	1564	482	1476	2627	3831	3831		1	9606
LLQLLGR	Unmodified	811.52797	0.52797287	401	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	4	0				1		18.56	18.56	2	0.0020604	13037	DP1145_14	116	27.371			11741000	1565	401	1477	2628	3832	3832		1	9606
LLQLVEDR	Unmodified	984.5604	0.56039521	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			17.783	17.783	2	2.6016E-05	12203	DP1145_13	118.74	41.969			0	1566	193	1478	2629	3833	3833		1	9606
LLQSQLQVK	Unmodified	1055.6339	0.63389451	629	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	3	0			1			16.135	16.135	2	0.016786	9599	DP1145_13	89.296	24.538			48743000	1567	629	1479	2630	3834	3834		1	9606
LLQTDDEEEAGLLELLK	Unmodified	1927.999	0.99900353	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	1.33	0.471	2	1				22.665	22.665	2	3.6918E-149	20124	DP1145_12	251.84	192.64			4113900	1568	322	1480	2631;2632;2633	3835;3836;3837;3838	3837		4	9606
LLRDYQELMNTK	Oxidation (M)	1538.7763	0.776278	13	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	no	no	0	1	1	1	0	1					16.173	16.173	3	0.0055912	8158	DP1145_11	83.53	52.533		+	46227000	1569	13	1481	2634	3839	3839	8	1	9606
LLSDATVEKDESHAGK	Unmodified	1698.8424	0.84244331	474	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	1	4	0				1		14.386	14.386	3	0.00083498	6474	DP1145_14	138.28	98.071			142930000	1570	474	1482	2635	3840;3841	3841		2	9606
LLSFMAPIDHTTMNDDAR	Oxidation (M)	2062.9452	0.9452106	734	Q9NY61	AATF	Protein AATF	yes	yes	0	1	0	3	0			1			18.979	18.979	3	0.011946	13944	DP1145_13	73.833	52.015			20202000	1571	734	1483	2636	3842	3842	527	1	9606
LLSLISIALPENK	Unmodified	1409.8494	0.84936659	558	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	0	1					21.806	21.806	2	0.0068873	16805	DP1145_11	88.681	40.59			2577600	1572	558	1484	2637	3843	3843		1	9606
LLSMLDDVPK	Oxidation (M)	1145.6002	0.60021112	797				yes	yes	0	1	0	1	0	1					17.649	17.649	2	0.023733	10572	DP1145_11	101.6	39.493	+		147960000	1573	797	1485	2638	3844	3844	557	1	9606
LLSNDEVTIK	Unmodified	1130.6183	0.61830402	609	Q92734	TFG	Protein TFG	yes	yes	0	0	0	3	0			1			16.677	16.677	2	8.6357E-06	10483	DP1145_13	143.03	70.895			128230000	1574	609	1486	2639	3845	3845		0	9606
LLTECPPMMDTEYTK	2 Oxidation (M)	1859.7991	0.79912321	322	P55060	CSE1L	Exportin-2	yes	yes	0	2	0	5	0					1	17.973	17.973	3	0.037376	11581	DP1145_15	48.532	12.875			8172300	1575	322	1487	2640	3846	3846	243;244	0	9606
LLTSFLPAQLLR	Unmodified	1370.8286	0.82857157	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1.5	0.5	1	1				22.185	22.185	2	0.00023336	17305	DP1145_11	107.69	55.744			14212000	1576	142	1488	2641;2642	3847;3848;3849;3850	3847		4	9606
LLTWVIGTGSPR	Unmodified	1298.7347	0.73467118	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					20.048	20.048	2	0.028409	14377	DP1145_11	72.006	36.782			6261200	1577	605	1489	2643	3851	3851		1	9606
LLVPTQFVGAIIGK	Unmodified	1454.8861	0.88608645	36	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			22.375	22.375	2	0.010403	18847	DP1145_13	82.029	0			44183000	1578	36	1490	2644	3852;3853	3853		2	9606
LLVPTQYVGAIIGK	Unmodified	1470.881	0.88100107	737	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			21.206	21.206	2	0.0098642	17398	DP1145_13	66.92	39.822			12361000	1579	737	1491	2645	3854	3854		1	9606
LLYAFAEATVPK	Unmodified	1321.7282	0.72818882	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.721	19.721	2	0.00019818	15716	DP1145_12	110.76	55.386			1248800000	1580	124	1492	2646;2647;2648;2649	3855;3856;3857;3858;3859;3860	3856		6	9606
LLYGESPWGVTPISFETPSNPPLAR	Unmodified	2727.3908	0.39081727	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	2					22.519	22.519	2;3	1.6132E-56	17806	DP1145_11	174.63	134.31			5996100	1581	43	1493	2650;2651	3861;3862;3863;3864;3865;3866;3867	3865		7	9606
LMEEIMSEKENK	Unmodified	1479.6949	0.69491614	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	1	3	0			1			16.135	16.135	3	0.015355	9727	DP1145_13	68.515	28.5			30336000	1582	193	1494	2652	3868	3868		1	9606
LMEEIMSEKENK	Oxidation (M)	1495.6898	0.68983076	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	1	3	0			1			14.714	14.714	3	0.0053766	7366	DP1145_13	91.961	53.002			0	1583	193	1494	2653	3869	3869	159	1	9606
LNDLEDALQQAK	Unmodified	1356.6885	0.68850885	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				18.76	18.76	2	4.0616E-06	14156	DP1145_12	167.12	114.63		+	29999000	1584	13	1495	2654;2655	3870;3871	3871		2	9606
LNDLEDALQQAKEDLAR	Unmodified	1940.9803	0.98033378	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.33	0.943	1		2			20.988	20.988	2;3	4.8356E-86	16968	DP1145_13	223.06	155.68		+	125990000	1585	13	1496	2656;2657;2658	3872;3873;3874	3874		2	9606
LNDLEEALQQAK	Unmodified	1370.7042	0.70415892	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	1	1		1			19.072	19.072	2	0	14145	DP1145_13	300.5	212.69		+	54097000	1586	21	1497	2659;2660	3875;3876	3876		2	9606
LNELLTNMEELK	Unmodified	1445.7436	0.74358089	635	Q96LZ7	RMDN2	Regulator of microtubule dynamics protein 2	yes	yes	0	0	0	4	0				1		16.257	16.257	2	0.0082826	9298	DP1145_14	125.57	39.225			0	1587	635	1498	2661	3877	3877		1	9606
LNFSHGTHEYHAETIK	Unmodified	1882.8962	0.89621022	176	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	0	1					14.762	14.762	4	0.019098	6186	DP1145_11	71.98	43.768			7693200	1588	176	1499	2662	3878	3878		1	9606
LNIPVSQVNPR	Unmodified	1235.6986	0.69862003	119;173	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	1.5	0.5	1	1				17.171	17.171	2	0.0002158	9686	DP1145_11	112.11	63.311			100190000	1589	119;173	1500	2663;2664	3879;3880;3881	3879		3	9606
LNISYTR	Unmodified	865.46577	0.46576654	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.25	1.3	2		1	1		16.043	16.043	2	6.8443E-24	9394	DP1145_13	158.38	68.476			1031299999.9999999	1590	647	1501	2665;2666;2667;2668	3882;3883;3884;3885;3886;3887;3888	3885		7	9606
LPAAGVGDMVMATVK	2 Oxidation (M)	1490.7473	0.74728606	372	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					1	16.604	16.604	2	0.0068215	9467	DP1145_15	79.201	41.115			373010000	1591	372	1502	2669	3889	3889	270;271	1	9606
LPAAGVGDMVMATVK	Oxidation (M)	1474.7524	0.75237144	372	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	1	0	5	0					1	18.092	18.092	2	0.0018716	11679	DP1145_15	142.76	99.113			103910000	1592	372	1502	2670	3890	3890	270;271	1	9606
LPAIALDLLR	Unmodified	1093.6859	0.68593008	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.654	21.654	2	0.017249	18635	DP1145_12	88.37	22.019			7889900	1593	663	1503	2671	3891	3891		1	9606
LPCIYLVDSGGAYLPR	Unmodified	1792.9182	0.91819121	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0.707		1	2	1		21.107	21.107	2;3	8.2389E-33	17117	DP1145_13	191.33	136.84			1150500000	1594	710	1504	2672;2673;2674;2675	3892;3893;3894;3895;3896;3897;3898;3899	3894		8	9606
LPEDPLLSGLLDSPALK	Unmodified	1776.9873	0.98731663	295	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					22.922	22.922	2	0.0026536	18414	DP1145_11	118.61	95.921			1808700	1595	295	1505	2676	3900;3901	3901		2	9606
LPELLLK	Unmodified	824.53714	0.53714057	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			18.87	18.87	2	4.657E-31	12458	DP1145_11	170.31	36.195			622300000	1596	441	1506	2677;2678;2679	3902;3903;3904;3905	3902		3	9606
LPGGNEIGMVAWK	Oxidation (M)	1386.6966	0.69657112	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.66	18.66	2	0.0004662	12164	DP1145_11	134.98	89.609			295410000	1597	441	1507	2680	3906	3906	323	1	9606
LPGGNEIGMVAWK	Unmodified	1370.7017	0.70165649	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.543	19.543	2	0.0011743	13617	DP1145_11	117.14	44.208			212520000	1598	441	1507	2681	3907;3908	3907		2	9606
LPLFGLGR	Unmodified	871.52797	0.52797287	401	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	4	0				1		19.961	19.961	2	0.024627	15164	DP1145_14	94.163	9.5538			11236000	1599	401	1508	2682	3909	3909		1	9606
LPLPYGFSAMQGWR	Unmodified	1621.8075	0.80751855	49	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			1			21.793	21.793	2	3.1019E-06	18143	DP1145_13	164.33	124.46			19620000	1600	49	1509	2683	3910	3910		1	9606
LPLQDVYK	Unmodified	974.54368	0.54368251	392	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3	0.816		1	1	1		17.371	17.371	2	0.0016199	11580	DP1145_13	119.29	36.54			841620000	1601	392	1510	2684;2685;2686	3911;3912;3913;3914;3915	3913		5	9606
LPLTPVFEGLAFK	Unmodified	1430.8173	0.81733818	432	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	1	0	1					22.196	22.196	2	0.0057958	17367	DP1145_11	97.456	54.174			1431400	1602	432	1511	2687	3916	3916		1	9606
LPLVTPHTQCR	Unmodified	1320.6972	0.69723982	352	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	3.5	0.5			1	1		15.163	15.163	3	0.012562	8164	DP1145_13	85.963	43.615			44548000	1603	352	1512	2688;2689	3917;3918	3917		1	9606
LPNFGFVVFDDSEPVQK	Unmodified	1936.9571	0.95707914	450	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	3	0			1			22.275	22.275	2	0.0026566	18825	DP1145_13	122.52	97.326			11274000	1604	450	1513	2690	3919	3919		1	9606
LPPLPAVER	Unmodified	990.58622	0.58621603	105	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3	0			1			17.678	17.678	2	0.0058098	11958	DP1145_13	101.6	55.175			59092000	1605	105	1514	2691	3920	3920		1	9606
LPPNTNDEVDEDPTGNK	Unmodified	1853.8279	0.82791546	498	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.5	0.5	1	1				15.536	15.536	2	3.465E-10	7320	DP1145_11	161.87	113.58			7910100	1606	498	1515	2692;2693	3921;3922;3923	3921		3	9606
LPPVLANLMGSMGAGK	2 Oxidation (M)	1586.816	0.81603433	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	2	0	2.5	0.5		1	1			18.978	18.978	2	0.0010186	14687	DP1145_12	109.72	79.171			134750000	1607	644	1516	2694;2695	3924;3925;3926;3927;3928;3929	3926	468;469	6	9606
LPPVLANLMGSMGAGK	Unmodified	1554.8262	0.82620508	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				22.528	22.528	2	0.0070192	19889	DP1145_12	103.75	22.157			4894300	1608	644	1516	2696	3930;3931	3931		2	9606
LPQTPLDTGIPFPPVFSTSSAGVK	Unmodified	2455.2999	0.299877	553	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	2	0		1				22.446	22.446	2	0.0014002	19830	DP1145_12	82.877	55.908			0	1609	553	1517	2697	3932	3932		1	9606
LPRPPPPEMPESLK	Oxidation (M)	1602.844	0.84396364	406	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	1	1	0	1					15.695	15.695	3	0.0088379	7602	DP1145_11	73.415	42.676			31847000	1610	406	1518	2698	3933;3934	3934	300	2	9606
LPSRPGAQGVEPQNLR	Unmodified	1717.9224	0.92236539	600	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	1	3	0			1			15.513	15.513	3	0.036119	8592	DP1145_13	61.649	26.299			16262000	1611	600	1519	2699	3935	3935		1	9606
LPTELSKEEPSTK	Unmodified	1457.7613	0.76133944	254	P38432	COIL	Coilin	yes	yes	0	0	1	3	0			1			15.038	15.038	3	0.00023991	7985	DP1145_13	104.94	50.45			15240000	1612	254	1520	2700	3936	3936		1	9606
LPYDVTR	Unmodified	862.45487	0.45486751	76	Q9UPP1;O75151	PHF8;PHF2	Histone lysine demethylase PHF8;Lysine-specific demethylase PHF2	yes	no	0	0	0	2	0		1				16.089	16.089	2	7.2907E-05	10062	DP1145_12	128.38	61.389			25800000	1613	76	1521	2701	3937;3938	3938		2	9606
LQAEIEGLKGQR	Unmodified	1340.7412	0.74121312	14	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	3	0			1			15.541	15.541	3	0.0046223	8602	DP1145_13	88.155	38.966		+	59748000	1614	14	1522	2702	3939;3940	3939		2	9606
LQAFGLNPK	Unmodified	986.55492	0.5549159	581	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	3	1		1		1		17.414	17.414	2	0.00011977	12178	DP1145_12	116.88	34.579			9708700	1615	581	1523	2703;2704	3941;3942	3941		1	9606
LQAQSLSTVGPR	Unmodified	1255.6884	0.68844927	57	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				16.128	16.128	2	1.3728E-84	10105	DP1145_12	223.87	112.81			38879000	1616	57	1524	2705	3943;3944	3944		2	9606
LQDEIQNMKEEMAR	2 Oxidation (M)	1765.7975	0.79748373	145	P08670	VIM	Vimentin	yes	yes	0	2	1	3.5	0.5			1	1		14.095	14.095	3	0.0052437	6484	DP1145_13	81.789	47.345			5214800	1617	145	1525	2706;2707	3945;3946	3945	115;116	2	9606
LQDSQLWK	Unmodified	1016.5291	0.52909508	606	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1	0	1					16.391	16.391	2	0.028925	8584	DP1145_11	89.55	8.2531			30203000	1618	606	1526	2708	3947	3947		1	9606
LQELAELEAK	Unmodified	1142.6183	0.61830402	700	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		17.686	17.686	2	1.7307E-26	11569	DP1145_14	177.7	108.91			28311000	1619	700	1527	2709	3948	3948		0	9606
LQEPTPSSGDPGEHDPASTHK	Unmodified	2185.9876	0.987604	473	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1	0	1					14.069	14.069	4	0.013141	5150	DP1145_11	70.837	30.406			2477600	1620	473	1528	2710	3949	3949		1	9606
LQETLSAADR	Unmodified	1102.5619	0.56185177	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.291	15.291	2	0.017128	6839	DP1145_11	88.496	36.014			11105000	1621	400	1529	2711	3950	3950		1	9606
LQETSSQSYVEEQK	Unmodified	1654.7686	0.76860967	581	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	3	0.816		1	1	1		15.176	15.176	2	1.3334E-168	8584	DP1145_12	257.8	197.63			43317000	1622	581	1530	2712;2713;2714	3951;3952;3953	3951		3	9606
LQGIDLDR	Unmodified	928.49779	0.49779495	612	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	2	0		1				17.104	17.104	2	0.028161	11571	DP1145_12	90.37	17.581			9306800	1623	612	1531	2715	3954	3954		1	9606
LQIEESSKPVR	Unmodified	1284.7038	0.70376498	175	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		14.385	14.385	3	0.00014767	6462	DP1145_14	154.84	60.534			149530000	1624	175	1532	2716	3955;3956	3955		2	9606
LQNDGMTVWHAR	Unmodified	1426.6776	0.67756701	664	Q9BRC7	PLCD4	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4	yes	yes	0	0	0	3	0			1			16.677	16.677	2	0.015895	10016	DP1145_13	80.916	25.455			36038000	1625	664	1533	2717	3957	3957		1	9606
LQNKEHVIEALR	Unmodified	1448.81	0.80996139	224	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	1	4	0				1		14.987	14.987	3	0.017035	7221	DP1145_14	117.2	80.88			3066200	1626	224	1534	2718	3958	3958		0	9606
LQNKEHVIEALRR	Unmodified	1604.9111	0.91107242	224	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	2	4.5	0.5				1	1	14.633	14.633	4	0.010169	6777	DP1145_14	90.434	20.983			11189000	1627	224	1535	2719;2720	3959;3960	3959		0	9606
LQNLDALTNLTVLSMQSNR	Oxidation (M)	2146.1052	0.10521671	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		21.061	21.061	2	2.8478E-45	16755	DP1145_14	196.18	145.71			42411000	1628	499	1536	2721	3961;3962	3961	378	2	9606
LQNLDALTNLTVLSMQSNR	Unmodified	2130.1103	0.11030209	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		21.891	21.891	2	0	17839	DP1145_14	348.73	276.2			11528000	1629	499	1536	2722	3963;3964;3965;3966	3964		4	9606
LQPHPQLSPEIR	Unmodified	1413.7728	0.7728476	465	Q13895	BYSL	Bystin	yes	yes	0	0	0	3	0			1			15.642	15.642	3	0.016742	8861	DP1145_13	90.697	47.854			63468000	1630	465	1537	2723	3967	3967		0	9606
LQSQLLSLEK	Unmodified	1157.6656	0.66558856	304	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	1	0	1					17.961	17.961	2	0.0068108	10615	DP1145_11	99.815	0			11841000	1631	304	1538	2724	3968	3968		1	9606
LQTPNTFPK	Unmodified	1044.5604	0.56039521	485	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2.5	0.5		1	1			16.086	16.086	2	0.028942	10033	DP1145_12	80.219	11.021			98605000	1632	485	1539	2725;2726	3969;3970	3969		2	9606
LQVEHPVTEMITGTDLVEWQLR	Oxidation (M)	2609.3159	0.31593777	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			20.28	20.28	3	3.083E-20	16033	DP1145_13	170.02	142.89			724810000	1633	647	1540	2727	3971	3971	478	1	9606
LQVEHPVTEMITGTDLVEWQLR	Unmodified	2593.321	0.32102315	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.478	21.478	3	0.0046969	17792	DP1145_13	64.589	48.493			232720000	1634	647	1540	2728	3972	3972		1	9606
LQVEHTVTEEITDVDLVHAQIHVAEGR	Unmodified	3037.5469	0.546877	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0			1			19.28	19.28	4	3.8636E-05	14428	DP1145_13	72.755	60.789			65396000	1635	164	1541	2729	3973	3973		0	9606
LRAPTSTEANHIR	Unmodified	1464.7797	0.77972389	396	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	1	2	0		1				13.767	13.767	3	6.1654E-05	6726	DP1145_12	134.04	104.41			1434700	1636	396	1542	2730	3974;3975	3974		2	9606
LRELDPSLVSANDSPSGMQTR	Oxidation (M)	2288.1067	0.10667328	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	1	1	2	0		1				17.075	17.075	3	0.0080356	11598	DP1145_12	73.405	48.531			4159800	1637	529	1543	2731	3976	3976	407	1	9606
LREQQEEMVELR	Oxidation (M)	1574.7723	0.77225526	512	Q2M1P5	KIF7	Kinesin-like protein KIF7	yes	yes	0	1	1	1	0	1					16.262	16.262	3	0.010854	8310	DP1145_11	73.435	39.252			25379000	1638	512	1544	2732	3977	3977	393	1	9606
LRLDTGPQSLSGK	Unmodified	1370.7518	0.75177781	244	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3	0			2			16.042	16.042	2;3	2.6635E-05	9418	DP1145_13	145.23	84.585			276890000	1639	244	1545	2733;2734	3978;3979;3980;3981;3982;3983;3984	3982		7	9606
LSAISLGQGQGPRAEAMMR	2 Oxidation (M)	2003.9881	0.98807847	741	Q9P2D7	DNAH1	Dynein heavy chain 1, axonemal	yes	yes	0	2	1	3	0			1			15.541	15.541	3	0.04023	8565	DP1145_13	48.883	26.729			24897000	1640	741	1546	2735	3985	3985	531;532	0	9606
LSEPNMASISGQLEELYMAHSR	2 Oxidation (M)	2494.1468	0.14682353	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	2	0	2	0.816	1	1	1			19.965	19.965	3	0.0070076	15592	DP1145_13	65.189	37.229			223360000	1641	520	1547	2736;2737;2738	3986;3987;3988;3989	3989	401;402	4	9606
LSEPNMASISGQLEELYMAHSR	Oxidation (M)	2478.1519	0.15190891	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	2.25	0.829	1	1	2			20.618	20.618	3	6.5374E-05	17444	DP1145_13	126.9	96.69			164130000	1642	520	1547	2739;2740;2741;2742	3990;3991;3992;3993;3994	3993	401;402	5	9606
LSEPNMASISGQLEELYMAHSR	Unmodified	2462.157	0.15699429	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	0			1			21.778	21.778	3	0.00054611	18222	DP1145_13	105.95	86.256			41733000	1643	520	1547	2743	3995	3995		1	9606
LSGLNAFDIAEELVK	Unmodified	1617.8614	0.86138784	107	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	4	0				1		23.122	23.122	2	3.237E-23	19571	DP1145_14	182.25	116.06			3764300	1644	107	1548	2744	3996;3997	3996		2	9606
LSHSDEKPYQCPVCQQR	Unmodified	2130.9575	0.95750662	329	P56270	MAZ	Myc-associated zinc finger protein	yes	yes	0	0	1	4	0				2		14.085	14.085	3;4	5.8413E-57	5970	DP1145_14	206.49	181.05			32346000	1645	329	1549	2745;2746	3998;3999;4000	3998		2	9606
LSILYPATTGR	Unmodified	1190.6659	0.66592292	228	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	4	0				1		18.46	18.46	2	0.036744	12754	DP1145_14	109.44	39.614			33700000	1646	228	1550	2747	4001	4001		0	9606
LSLAEIYEQEYIK	Unmodified	1597.8239	0.8239397	40	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2	0		1				21.094	21.094	2	0.031767	17947	DP1145_12	129	67.043			9362700	1647	40	1551	2748	4002	4002		0	9606
LSQTLSLVPR	Unmodified	1112.6554	0.65535823	93	O94766	B3GAT3	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3	yes	yes	0	0	0	3	1.41	1	1	1	1	1	17.194	17.194	2	0.01328	11265	DP1145_13	92.47	19.681			948740000	1648	93	1552	2749;2750;2751;2752;2753	4003;4004;4005;4006;4007;4008;4009	4005		7	9606
LSQYQEPLHLPGVR	Unmodified	1635.8733	0.87328993	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1.12	4	1	2	1		18.03	18.03	2;3	4.2804E-55	12576	DP1145_13	207.34	153.58			1870399999.9999998	1649	123	1553	2754;2755;2756;2757;2758;2759;2760;2761	4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021	4018		12	9606
LSSPATLNSR	Unmodified	1044.5564	0.55637247	4	CON__P00761			yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.991	14.991	2	2.4035E-36	7317	DP1145_14	190.73	126.52		+	3244999999.9999995	1650	4	1554	2762;2763;2764;2765;2766	4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033	4031		12	
LSSQEAASSFGDDR	Unmodified	1468.643	0.64301522	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			16.152	16.152	2	4.4613999999999996E-145	9574	DP1145_13	312.78	243.93			1043799999.9999999	1651	123	1555	2767;2768	4034;4035;4036;4037;4038;4039	4038		6	9606
LSSQEAASSFGDDRLLIEK	Unmodified	2065.0328	0.032763277	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	1	0	1					18.46	18.46	3	0.026324	11911	DP1145_11	106.93	69.242			95040000	1652	123	1556	2769	4040	4040		0	9606
LSSSPGLFGAFSVR	Unmodified	1423.746	0.74596415	530	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2	0		1				20.732	20.732	2	0.0341	17343	DP1145_12	67.456	29.153			6879000	1653	530	1557	2770	4041	4041		1	9606
LSTLCPSAVLQR	Unmodified	1343.7231	0.72312022	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				18.176	18.176	2	9.7438E-05	13479	DP1145_12	142.98	99.899			38225000	1654	566	1558	2771	4042	4042		1	9606
LTAELIEQAAQYTNAVR	Unmodified	1889.9847	0.98469087	152	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	4	0				1		20.961	20.961	2	0.00095862	16642	DP1145_14	139.48	102.49			21216000	1655	152	1559	2772	4043	4043		1	9606
LTDCVVMRDPASK	Oxidation (M)	1506.717	0.71704856	207	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	4	0				1		14.385	14.385	3	0.0053808	6460	DP1145_14	107.39	70.814			24131000	1656	207	1560	2773	4044	4044	168	0	9606
LTDRDIIVLQR	Unmodified	1340.7776	0.77759863	777	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	1	4	0				1		17.36	17.36	3	0.021088	11142	DP1145_14	91.469	53.448			6363300	1657	777	1561	2774	4045	4045		0	9606
LTEVKDELEPLLELVEQGIIPPGK	Unmodified	2658.4731	0.47314992	720	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			23.961	23.961	3	3.1594E-05	21287	DP1145_13	114.19	88.187			3773300	1658	720	1562	2775	4046	4046		1	9606
LTEVQDDKEEEEEENPLLVPLEEK	Unmodified	2853.3655	0.36550954	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	1	2	0		1				19.577	19.577	3	0.02422	15767	DP1145_12	47.931	29.17			12830000	1659	575	1563	2776	4047	4047		1	9606
LTFDTTFSPNTGK	Unmodified	1427.6933	0.69325988	277	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		18.781	18.781	2	0.0049031	13291	DP1145_14	119.27	61.416			0	1660	277	1564	2777	4048	4048		1	9606
LTFLVAQK	Unmodified	918.55385	0.55385327	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.061	18.061	2	1.4153E-11	11222	DP1145_11	143.02	65.645			342910000	1661	441	1565	2778	4049	4049		1	9606
LTGADGTPPGFLLK	Unmodified	1385.7555	0.7554662	416	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		19.16	19.16	2	0.0019697	13806	DP1145_14	121.61	86.887			13709000	1662	416	1566	2779	4050	4050		1	9606
LTLIDPETLLPR	Unmodified	1379.8024	0.8024164	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0.816	1	1	1			22.039	22.039	2	3.0467E-32	18425	DP1145_13	187.99	144.55			34206000	1663	566	1567	2780;2781;2782	4051;4052;4053;4054;4055;4056;4057	4056		7	9606
LTLSALLDGK	Unmodified	1029.607	0.60701105	203	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	1	0	1					20.34	20.34	2	0.036693	14653	DP1145_11	86.136	0			0	1664	203	1568	2783	4058	4058		1	9606
LTLTFNR	Unmodified	863.4865	0.48650199	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		17.759	17.759	2	0.021542	11779	DP1145_14	101.21	43.759			25449000	1665	249	1569	2784	4059	4059		0	9606
LTMLDIASNR	Unmodified	1132.591	0.59104341	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		19.061	19.061	2	0.040847	13716	DP1145_14	82.287	37.205			0	1666	499	1570	2785	4060	4060		1	9606
LTMQNLNDR	Unmodified	1103.5393	0.53934219	15	CON__P08727;P08727	KRT19	Keratin, type I cytoskeletal 19	yes	no	0	0	0	4	0				1		16.091	16.091	2	0.017166	9064	DP1145_14	88.819	0		+	23838000	1667	15	1571	2786	4061	4061		1	9606
LTPEEEEILNK	Unmodified	1313.6715	0.6714618	354	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	4	0				1		17.559	17.559	2	9.118E-25	11465	DP1145_14	182.76	122.75			599560000	1668	354	1572	2787	4062;4063;4064	4063		3	9606
LTQIQESQVTSHNK	Unmodified	1611.8216	0.82164829	604	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	2.5	0.5		1	1			14.233	14.233	3	6.0166000000000004E-24	6626	DP1145_13	182.89	144.71			21566000	1669	604	1573	2788;2789	4065;4066	4066		2	9606
LTQTSGETTHTDKVPGGEDK	Unmodified	2099.9971	0.99710605	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	1		2		2		12.885	12.885	3;4	0.00019856	4613	DP1145_14	134.4	103.98			28444000	1670	278	1574	2790;2791;2792;2793	4067;4068;4069;4070	4069		4	9606
LTSDDVKEQIYK	Unmodified	1437.7351	0.73512469	361	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					2	16.098	16.098	2;3	1.3233999999999999E-22	8549	DP1145_15	166.69	120.3			211920000	1671	361	1575	2794;2795	4071;4072;4073;4074	4073		4	9606
LTSLVPFVDAFQLER	Unmodified	1733.9352	0.93522148	469	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	3	1		1		1		23.09	23.09	2	5.7613E-06	20692	DP1145_12	151.26	96.649			4001400	1672	469	1576	2796;2797	4075;4076;4077	4075		3	9606
LTTDPDLILEVLR	Unmodified	1496.845	0.84500949	546	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	2	0		1				22.763	22.763	2	0.00045681	20256	DP1145_12	110.84	72.271			1999600	1673	546	1577	2798	4078;4079	4079		2	9606
LTTPTYGDLNHLVSATMSGVTTCLR	Oxidation (M)	2723.3259	0.32585053	394;137;464;113	P04350;P07437;P68371;Q13885;Q9BVA1	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3.33	0.471			2	1		20.554	20.554	2;3	0.00022544	16417	DP1145_13	107.62	86.77			638140000	1674	113;137;394;464	1578	2799;2800;2801	4080;4081;4082	4081	72	3	9606
LTTPTYGDLNHLVSATMSGVTTCLR	Unmodified	2707.3309	0.33093591	394;137;464;113	P04350;P07437;P68371;Q13885;Q9BVA1	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	3.5	0.5			1	1		22.266	22.266	3	1.0779E-07	18792	DP1145_13	130.98	105.31			287910000	1675	113;137;394;464	1578	2802;2803	4083;4084;4085;4086	4084		4	9606
LTVEDPVTVEYITR	Unmodified	1633.8563	0.85630246	45	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	4	0				1		19.723	19.723	2	0.0010615	14555	DP1145_14	116.03	82.15			24469000	1676	45	1579	2804	4087;4088	4087		2	9606
LVAGEMGQNEPDQGGQR	Oxidation (M)	1800.8061	0.80607458	656	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	1	0	4	0				1		14.186	14.186	2	0.012067	6316	DP1145_14	116.01	85.139			8307800	1677	656	1580	2805	4089	4089	488	1	9606
LVAGSTDQLLSAFVPPEEPPLQPAR	Unmodified	2631.3908	0.39081727	468	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				22.224	22.224	3	0.0020779	19498	DP1145_12	63.979	29.14			2509500	1678	468	1581	2806	4090;4091	4090		2	9606
LVDLPLGLPFYK	Unmodified	1373.7959	0.79587446	476	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1				22.378	22.378	2	0.0052332	19731	DP1145_12	93.649	55.346			1756300	1679	476	1582	2807	4092;4093	4092		2	9606
LVEALCAEHQINLIK	Unmodified	1749.9447	0.94474031	216	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	18.292	18.292	3	0.0032956	11980	DP1145_15	86.699	45.298			148470000	1680	216	1583	2808	4094	4094		1	9606
LVEKGETDLIQK	Unmodified	1371.7609	0.76094551	271	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	2	0		1				15.168	15.168	3	0.014465	8534	DP1145_12	90.793	42.949			1416300	1681	271	1584	2809	4095	4095		0	9606
LVGSVNLFSDENVPR	Unmodified	1644.8471	0.84713476	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				19.677	19.677	2	6.4632E-16	15725	DP1145_12	199.8	154.64			13753000	1682	663	1585	2810	4096;4097;4098	4096		3	9606
LVILANNCPALR	Unmodified	1352.7598	0.75984008	377	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	18.392	18.392	2	2.9501E-11	12101	DP1145_15	160.88	112.92			229250000	1683	377	1586	2811	4099	4099		1	9606
LVINGNPITIFQER	Unmodified	1612.8937	0.89369102	114	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		21.061	21.061	2	0.00061521	16579	DP1145_14	139.31	96.504			11623000	1684	114	1587	2812	4100	4100		1	9606
LVLADLLEPVK	Unmodified	1208.738	0.73802523	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	3	0.816		1	1	1		21.806	21.806	2	1.0309E-07	18898	DP1145_12	145.72	103.74			52500000	1685	673	1588	2813;2814;2815	4101;4102;4103;4104;4105	4102		5	9606
LVLDAFALPLTNLFK	Unmodified	1673.9756	0.97562974	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	3	0			1			24.797	24.797	2	0.026443	22433	DP1145_13	79.82	50.053			0	1686	322	1589	2816	4106	4106		1	9606
LVLEQVVTSIASVADTAEEK	Unmodified	2101.1154	0.11543027	35	O00410	IPO5	Importin-5	yes	yes	0	0	0	3	0			1			23.698	23.698	3	9.2312E-12	20889	DP1145_13	134.29	108.29			13748000	1687	35	1590	2817	4107;4108;4109	4108		3	9606
LVLVGDGGTGK	Unmodified	1014.571	0.5709599	371	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	4	0				1		16.285	16.285	2	1.358E-24	9397	DP1145_14	177.7	53.62			112890000	1688	371	1591	2818	4110;4111	4110		2	9606
LVNELTEFAK	Unmodified	1162.6234	0.6233894	12	CON__P02769			yes	yes	0	0	0	3	1.63	1		1		1	18.644	18.644	2	2.7156E-28	13522	DP1145_13	181.41	126.63		+	358660000	1689	12	1592	2819;2820;2821	4112;4113;4114;4115;4116	4113		3	9606
LVNHFVEEFK	Unmodified	1260.6503	0.65027285	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.278	17.278	2	0.010062	11416	DP1145_13	126.39	82.01			444500000	1690	156	1593	2822	4117	4117		0	9606
LVNHFVEEFKR	Unmodified	1416.7514	0.75138388	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3.33	0.471			2	1		16.415	16.415	2;3	2.6222E-55	9932	DP1145_13	194.12	135.87			1996099999.9999998	1691	156	1594	2823;2824;2825	4118;4119;4120;4121	4118		4	9606
LVPDLLAIVQR	Unmodified	1235.7602	0.76015765	699	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1.5	0.5	1	1				21.676	21.676	2	0.021147	16600	DP1145_11	80.165	51.004			6470800	1692	699	1595	2826;2827	4122;4123;4124	4122		3	9606
LVPELDTIVPLESTK	Unmodified	1652.9237	0.92365374	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.787	20.787	2	8.4324E-70	16348	DP1145_14	214.26	128.4			1671699999.9999998	1693	124	1596	2828;2829;2830;2831	4125;4126;4127;4128;4129;4130;4131;4132	4131		8	9606
LVPTGLDFGQEGFTR	Unmodified	1635.8257	0.82567103	280	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				20.179	20.179	2	0.0016968	16630	DP1145_12	106.67	71.015			26668000	1694	280	1597	2832	4133	4133		1	9606
LVQAFQFTDK	Unmodified	1195.6237	0.62372375	420	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	18.492	18.492	2	0.024216	12274	DP1145_15	81.95	50.647			22747000	1695	420	1598	2833	4134	4134		1	9606
LVQSPNSYFMDVK	Oxidation (M)	1542.7388	0.73882986	270	Q71UM5;P42677	RPS27L;RPS27	40S ribosomal protein S27-like;40S ribosomal protein S27	yes	no	0	1	0	5	0					1	18.192	18.192	2	0.0028104	11798	DP1145_15	128.51	86.323			170290000	1696	270	1599	2834	4135	4135	205	1	9606
LVQTPLTDR	Unmodified	1041.5819	0.58185893	471	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.227	16.227	2	0.0026691	8263	DP1145_11	106.6	45.917			6256400	1697	471	1600	2835	4136	4136		1	9606
LVSDIIDPVALEIPLSK	Unmodified	1821.0499	0.049916891	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0.816	1	1	1			22.481	22.481	2	2.0412E-06	19841	DP1145_12	154.23	121.74			30806000	1698	529	1601	2836;2837;2838	4137;4138;4139;4140;4141	4140		5	9606
LVSESSDVLPK	Unmodified	1172.6289	0.62886871	14	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3.5	0.5			1	1		16.394	16.394	2	0.0015279	10021	DP1145_13	104.01	54.572		+	179850000	1699	14	1602	2839;2840	4142;4143	4142		2	9606
LVTEMGTYATQSALSSSRPTK	Oxidation (M)	2243.1104	0.11036167	316	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	1	2	0		1				16.093	16.093	3	6.6592E-20	10080	DP1145_12	169.58	137.94			16818000	1700	316	1603	2841	4144;4145	4144	240	2	9606
LVTGGYDYDVK	Unmodified	1228.5976	0.59756858	732	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	3	0			1			16.878	16.878	2	0.028316	10849	DP1145_13	75.387	47.179			70880000	1701	732	1604	2842	4146	4146		1	9606
LVVGGLLSPEEDQSLLLSQFR	Unmodified	2299.2424	0.24236212	672	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	3	0			1			23.291	23.291	3	0.0060771	20299	DP1145_13	65.374	45.821			4555600	1702	672	1605	2843	4147	4147		1	9606
LVVPASQCGSLIGK	Unmodified	1427.7806	0.7806351	495	Q15366;P57721	PCBP2;PCBP3	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	yes	no	0	0	0	4	0				1		17.659	17.659	2	0.00478	11717	DP1145_14	92.611	11.273			136650000	1703	495	1606	2844	4148	4148		1	9606
LVVWAADR	Unmodified	928.51305	0.51305109	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		17.705	17.705	1;2	1.2835E-20	11730	DP1145_14	162.31	93.213			2615600000	1704	647	1607	2845;2846;2847	4149;4150;4151;4152	4152		3	9606
LVYILNR	Unmodified	889.53854	0.53853756	498	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				17.776	17.776	2	0.01728	12786	DP1145_12	104.94	41.966			10149000	1705	498	1608	2848	4153	4153		0	9606
LVYVFSQDFTVFGGSLSGAHAQK	Unmodified	2457.2329	0.23286007	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			21.365	21.365	2;3	3.4677000000000004E-29	17512	DP1145_13	175.59	151.99			105410000	1706	124	1609	2849;2850	4154;4155;4156;4157	4155		4	9606
LWALQDFSCLK	Unmodified	1379.6908	0.69075746	433	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					21.631	21.631	2	0.032039	16521	DP1145_11	105.1	67.545			0	1707	433	1610	2851	4158	4158		1	9606
LWSLDSDEPVADIEGHTVR	Unmodified	2138.028	0.02801225	53	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			19.78	19.78	3	0.011092	15420	DP1145_13	75.682	41.789			34864000	1708	53	1611	2852	4159	4159		1	9606
LYDIDVAK	Unmodified	935.4964	0.49639797	368	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	17.204	17.204	2	0.001004	10301	DP1145_15	120.49	46.872			72534000	1709	368	1612	2853	4160	4160		1	9606
LYDLNHNEIGELIR	Unmodified	1697.8737	0.87368386	86	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					19.343	19.343	3	0.00041742	13169	DP1145_11	132.97	81.503			14095000	1710	86	1613	2854	4161	4161		1	9606
LYGSAGPPPTGEEDTAEKDEL	Unmodified	2174.9855	0.98553831	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			17.681	17.681	2	0.012899	12224	DP1145_13	104.94	84.082			80496000	1711	160	1614	2855	4162	4162		1	9606
LYIGNLNESVTPADLEK	Unmodified	1874.9626	0.96255845	737	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			19.833	19.833	2	0.02255	15315	DP1145_13	101.53	82.722			0	1712	737	1615	2856	4163	4163		1	9606
LYKDDQLLDDGK	Unmodified	1421.7038	0.70382456	497	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	1	5	0					2	16.07	16.07	2;3	3.0109E-07	8491	DP1145_15	152.67	90.907			121720000	1713	497	1616	2857;2858	4164;4165;4166	4166		3	9606
LYLVSDVLYNSSAK	Unmodified	1570.8243	0.82427405	47	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				20.206	20.206	2	0.018691	16670	DP1145_12	87.667	48.917			7393600	1714	47	1617	2859	4167	4167		1	9606
LYPGSVYGR	Unmodified	1010.5185	0.5185304	479	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	2	0		1				16.504	16.504	2	0.040956	10901	DP1145_12	75.213	21.861			7283300	1715	479	1618	2860	4168	4168		1	9606
LYPLEIVFGMNGR	Oxidation (M)	1523.7806	0.7806351	719	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	1	0	4	0				1		22.358	22.358	2	0.013359	18504	DP1145_14	109.79	65.365			0	1716	719	1619	2861	4169	4169	519	1	9606
LYPVLQQSLVR	Unmodified	1314.766	0.76597131	523	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		19.255	19.255	2	0.00027557	13948	DP1145_14	109.66	64.296			30856000	1717	523	1620	2862	4170;4171	4170		2	9606
LYSILQGDSPTK	Unmodified	1320.6925	0.6925316	47	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				18.176	18.176	2	0.031052	13277	DP1145_12	70.399	30.462			11068000	1718	47	1621	2863	4172	4172		1	9606
LYSPSQIGAFVLMK	Unmodified	1552.8323	0.83233632	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.578	21.578	2	0.00063741	17841	DP1145_13	120.63	60.464			31835000	1719	255	1622	2864	4173;4174	4174		2	9606
LYTLVTYVPVTTFK	Unmodified	1643.9174	0.91744615	378	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	21.185	21.185	2	0.00058235	16087	DP1145_15	112.94	70.22			78102000	1720	378	1623	2865	4175	4175		1	9606
MAADTPGKPSASPMAGAPASASR	Acetyl (Protein N-term);Oxidation (M)	2186.0096	0.0096017684	711	Q9HCC6	HES4	Transcription factor HES-4	yes	yes	1	1	1	3	0			1			15.902	15.902	3	0.042038	9195	DP1145_13	41.615	14.725			0	1721	711	1624	2866	4176	4176	516	1	9606
MAALEVYVR	Oxidation (M)	1066.5481	0.54811597	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.261	17.261	2	0.0094234	9959	DP1145_11	109.01	43.76			132440000	1722	441	1625	2867	4177	4177	324	1	9606
MAALEVYVR	Unmodified	1050.5532	0.55320134	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				18.338	18.338	2	0.0059025	13653	DP1145_12	107.66	29.99			0	1723	441	1625	2868	4178	4178		1	9606
MAAWKSWTALR	Acetyl (Protein N-term);Oxidation (M)	1377.6863	0.68634078	630	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	1	1	1	3	0			1			14.434	14.434	3	0.026051	6827	DP1145_13	57.348	21.045			21131000	1724	630	1627	2869	4179	4179	455	1	9606
MADALDNYVIR	Oxidation (M)	1295.618	0.61798644	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			18.372	18.372	2	2.2215999999999998E-32	13147	DP1145_13	187.22	105.92			252750000	1725	123	1628	2870;2871	4180;4181	4181	83	2	9606
MADALDNYVIR	Unmodified	1279.6231	0.62307182	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.079	19.079	2	3.4684E-05	14198	DP1145_13	136.57	85.5			270300000	1726	123	1628	2872	4182	4182		1	9606
MADEAVCVGPAPTSK	Oxidation (M)	1547.696	0.69597877	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3.25	1.48	1		1	1	1	15.348	15.348	2	1.3885E-220	6979	DP1145_11	273.24	225.12			76113000	1727	123	1629	2873;2874;2875;2876	4183;4184;4185;4186;4187;4188	4183	84	6	9606
MADEAVCVGPAPTSK	Unmodified	1531.7011	0.70106415	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			16.068	16.068	2	4.3961000000000004E-55	9421	DP1145_13	202	154.18			596120000	1728	123	1629	2877;2878	4189;4190;4191;4192	4191		4	9606
MAELYVK	Unmodified	852.44153	0.44152563	713	Q9HD15	SRA1	Steroid receptor RNA activator 1	yes	yes	0	0	0	4	0				1		22.631	22.631	1	0.039713	18365	DP1145_14	84.025	27.999			4217400	1729	713	1630	2879	4193	4193		0	9606
MAFVNSVAKPPR	Oxidation (M)	1331.702	0.70199085	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	1	1	2.5	0.5		1	1			15.053	15.053	3	0.00010455	8482	DP1145_12	106.16	77.926			72064000	1730	472	1631	2880;2881	4194;4195;4196;4197	4195	361	4	9606
MAFVNSVAKPPR	Unmodified	1315.7071	0.70707622	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2.5	0.5		1	1			16.119	16.119	3	0.011373	10158	DP1145_12	97.734	61.826			35872000	1731	472	1631	2882;2883	4198;4199;4200	4198		3	9606
MAGAATQASLESAPR	Acetyl (Protein N-term);Oxidation (M)	1517.7144	0.71440603	679	Q9BXR0	QTRT1	Queuine tRNA-ribosyltransferase	yes	yes	1	1	0	4	0				1		23.407	23.407	2	0.042623	19996	DP1145_14	40.496	6.6301			0	1732	679	1632	2884	4201	4201	499	1	9606
MAGGGSDLSTR	Acetyl (Protein N-term);Oxidation (M)	1108.4819	0.48188689	707	Q9H930	SP140L	Nuclear body protein SP140-like protein	yes	yes	1	1	0	3	0			1			18.879	18.879	2	0.031726	14055	DP1145_13	49.418	18.621			108810000	1733	707	1633	2885	4202	4202	509	1	9606
MAKMELSK	Acetyl (Protein N-term);2 Oxidation (M)	1010.4777	0.47765314	511	Q2KHT4	GSG1	Germ cell-specific gene 1 protein	yes	yes	1	2	1	5	0					1	21.702	21.702	2	0.038524	16771	DP1145_15	50.607	6.1597			0	1734	511	1634	2886	4203	4203	391;392	1	9606
MAKPEEVLVVENDQGEVVR	Oxidation (M)	2156.0783	0.078333261	46	O14980	XPO1	Exportin-1	yes	yes	0	1	1	2	0		1				17.166	17.166	3	0.0046492	11779	DP1145_12	90.654	58.563			8358800	1735	46	1635	2887	4204	4204	36	1	9606
MALDIEIATYR	Oxidation (M)	1310.654	0.6540376	145	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	1	0	3	0			1			19.121	19.121	2	5.4216E-05	14260	DP1145_13	157.34	97.414			0	1736	145	1636	2888	4205	4205	117	1	9606
MALLTAAAR	Acetyl (Protein N-term);Oxidation (M)	974.5219	0.52190122	79	O75390	CS	Citrate synthase, mitochondrial	yes	yes	1	1	0	3	0			1			16.618	16.618	2	0.025606	10343	DP1145_13	65.803	29.102			0	1737	79	1637	2889	4206	4206	56	1	9606
MALSMPLNGLK	Acetyl (Protein N-term);Oxidation (M)	1231.6305	0.63046539	791	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	1	1	0	1	0	1					20.516	20.516	2	0.029446	14908	DP1145_11	61.962	19.364			0	1738	791	1638	2890	4207	4207	554	1	9606
MALTLFDTDEYR	Acetyl (Protein N-term)	1515.6915	0.69154532	183	P15882	CHN1	N-chimaerin	yes	yes	1	0	0	4	0				1		15.306	15.306	3	0.01212	8129	DP1145_14	68.355	16.377			121510000	1739	183	1639	2891	4208	4208		1	9606
MAPDSDPFPEGPLLK	Acetyl (Protein N-term);Oxidation (M)	1670.7862	0.78617399	675	Q9BVQ7	SPATA5L1	Spermatogenesis-associated protein 5-like protein 1	yes	yes	1	1	0	4	0				2		16.158	16.158	3	0.012549	9162	DP1145_14	71.888	19.816			0	1740	675	1640	2892;2893	4209;4210	4210	497	2	9606
MAPVPLDDSNRPASLTK	Oxidation (M)	1826.9196	0.91964777	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	1	1	2	0		1				15.943	15.943	3	1.7692E-06	9880	DP1145_12	151.22	108.7			72462000	1741	735	1641	2894	4211;4212	4211	529	2	9606
MASSCAVQVKLELGHRAQVR	Acetyl (Protein N-term);Oxidation (M)	2297.1733	0.17325347	269	P42568	MLLT3	Protein AF-9	yes	yes	1	1	2	4	0				1		20.661	20.661	3	0.034204	15140	DP1145_14	41.422	7.7555			14908000	1742	269	1642	2895	4213	4213	204	1	9606
MASTFIGNSTAIQELFK	Unmodified	1856.9342	0.93423521	669	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	3	0			1			22.075	22.075	2	0.0011219	18411	DP1145_13	163.51	30.717			73442000	1743	669	1643	2896	4214	4214		1	9606
MATDVQLADYPLMSPKAELK	Oxidation (M)	2236.1119	0.11194157	636	Q96M53	TBATA	Protein TBATA	yes	yes	0	1	1	4	0				1		19.761	19.761	3	0.037048	14872	DP1145_14	54.412	17.37			433010000	1744	636	1644	2897	4215	4215	461	1	9606
MATEVAADALGEEWK	Oxidation (M)	1635.745	0.74503745	369	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	0	4	0				1		18.893	18.893	2	3.7032000000000003E-103	13566	DP1145_14	229.68	187.98			141310000	1745	369	1645	2898	4216	4216	267	1	9606
MATEVAADALGEEWKGYVVR	Oxidation (M)	2210.0678	0.067768574	369	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	4	0				1		19.679	19.679	3	0.033504	14739	DP1145_14	66.261	35.028			26782000	1746	369	1646	2899	4217	4217	267	0	9606
MAVTFIGNSTAIQELFK	Oxidation (M)	1884.9655	0.96553533	137	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	3	1.29	1	1	2	1	1	22.076	22.076	2;3	3.7392999999999996E-126	18186	DP1145_14	242.48	170.28			745100000	1747	137	1647	2900;2901;2902;2903;2904;2905	4218;4219;4220;4221;4222;4223;4224	4223	107	6	9606
MAVTFIGNSTAIQELFK	Unmodified	1868.9706	0.97062071	137	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			1			22.642	22.642	2	1.2223999999999999E-104	19398	DP1145_13	293.31	241.87			225520000	1748	137	1647	2906	4225	4225		0	9606
MAVTFIGNSTAIQELFKR	Oxidation (M)	2041.0666	0.066646362	137	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	1	4	0				1		20.99	20.99	3	0.0346	16526	DP1145_14	59.345	34.427			0	1749	137	1648	2907	4226	4226	107	1	9606
MAVVATLR	Acetyl (Protein N-term);Oxidation (M)	917.50044	0.50043749	28	E7ETH6	ZNF587B	Zinc finger protein 587B	yes	yes	1	1	0	4	0				1		16.736	16.736	2	0.040969	10306	DP1145_14	46.016	9.4593			9457100	1750	28	1649	2908	4227	4227	23	1	9606
MDDREDLVYQAK	Acetyl (Protein N-term);Oxidation (M)	1539.6875	0.68752257	357	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	1	1	2.5	1.5	1			1		16.872	16.872	2	0.008149	9280	DP1145_11	68.893	37.135			22639000	1751	357	1650	2909;2910	4228;4229;4230	4228	263	3	9606
MDEPSPLAQPLELNQHSR	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	1.5	0.5	1	1				19.069	19.069	2;3	0.00062341	14876	DP1145_12	120.9	97.067			84688000	1752	441	1651	2911;2912	4231;4232;4233	4233	325	3	9606
MDEQALLGLNPNADSDFR	Acetyl (Protein N-term);Oxidation (M)	2062.9266	0.92658365	59	O43592	XPOT	Exportin-T	yes	yes	1	1	0	1.5	0.5	1	1				22.09	22.09	2	2.5663E-11	19342	DP1145_12	161.49	120.01			2391400	1753	59	1652	2913;2914	4234;4235;4236	4235	45	3	9606
MDFKEDLSGIAEMFK	2 Oxidation (M)	1791.8059	0.80592315	278	P46013	MKI67	Antigen KI-67	yes	yes	0	2	1	2.33	0.471		2	1			20.365	20.365	2;3	0.0012632	16859	DP1145_12	121.56	81.934			28765000	1754	278	1653	2915;2916;2917	4237;4238;4239;4240	4238	214;215	4	9606
MDLFGDLPEPER	Acetyl (Protein N-term);Oxidation (M)	1475.6602	0.66024519	691	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	1	1	0	4	0				1		22.341	22.341	2	0.019541	18464	DP1145_14	55.426	18.869			1796300	1755	691	1654	2918	4241	4241	501	0	9606
MDNYADLSDTELTTLLR	Acetyl (Protein N-term);Oxidation (M)	2027.9358	0.93575135	302	P50402	EMD	Emerin	yes	yes	1	1	0	4	0				1		23.687	23.687	2	3.7576999999999996E-256	20380	DP1145_14	281.32	247.56			2383600	1756	302	1655	2919	4242;4243	4242	235	2	9606
MDPMNIWDDIITNR	Oxidation (M)	1748.7862	0.78619076	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22.858	22.858	2	0.0065177	18311	DP1145_11	127.52	76.234			0	1757	400	1656	2920	4244	4244	297	1	9606
MDPNTIIEALR	Acetyl (Protein N-term);Oxidation (M)	1329.6599	0.65985126	101	O95373	IPO7	Importin-7	yes	yes	1	1	0	3	1		1		1		22.109	22.109	2	0.00081809	19310	DP1145_12	100.25	40.181			14412000	1758	101	1657	2921;2922	4245;4246	4245	63	1	9606
MDPNTIIEALR	Acetyl (Protein N-term)	1313.6649	0.66493664	101	O95373	IPO7	Importin-7	yes	yes	1	0	0	2	0		1				24.384	24.384	2	0.018362	22372	DP1145_12	66.56	31.291			1529600	1759	101	1657	2923	4247	4247		1	9606
MDPYMIQMSSK	Acetyl (Protein N-term);2 Oxidation (M)	1403.5771	0.57710919	191	P17735	TAT	Tyrosine aminotransferase	yes	yes	1	2	0	1	0	1					15.781	15.781	3	0.041051	7574	DP1145_11	41.704	11.682			0	1760	191	1658	2924	4248	4248	157;158	1	9606
MDSFDEDLARPSGLLAQER	Unmodified	2149.011	0.010981977	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				19.377	19.377	3	0.018128	15334	DP1145_12	99.344	78.694			8664300	1761	772	1659	2925	4249	4249		0	9606
MDVFLMIR	Acetyl (Protein N-term);2 Oxidation (M)	1097.5249	0.52493768	497	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	1	2	0	2	0		1				21.855	21.855	2	0.017928	18960	DP1145_12	70.912	25.831			1010400	1762	497	1660	2926	4250	4250	373;374	1	9606
MDVFLMIR	Acetyl (Protein N-term);Oxidation (M)	1081.53	0.53002306	497	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	1	1	0	5	0					2	23.815	23.815	2	0.0053504	19064	DP1145_15	94.262	58.993			10650000	1763	497	1660	2927;2928	4251;4252	4251	373;374	1	9606
MEADIITNLR	Acetyl (Protein N-term);Oxidation (M)	1232.6071	0.60708741	624	Q96EA4	SPDL1	Protein Spindly	yes	yes	1	1	0	3	0			1			20.498	20.498	2	0.027313	16255	DP1145_13	66.299	18.724			0	1764	624	1661	2929	4253	4253	453	1	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);4 Oxidation (M)	3012.232	0.23195142	134	P06748	NPM1	Nucleophosmin	yes	yes	1	4	1	4	0				1		21.061	21.061	3	2.2154E-05	16496	DP1145_14	101.94	89.327			544970000	1765	134	1662	2930	4254;4255;4256;4257	4254	99;100;101;102	4	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);3 Oxidation (M)	2996.237	0.2370368	134	P06748	NPM1	Nucleophosmin	yes	yes	1	3	1	4.5	0.5				1	1	21.572	21.572	3	5.2978E-07	17172	DP1145_14	124.86	106.3			271570000	1766	134	1662	2931;2932	4258;4259;4260;4261;4262;4263;4264	4260	99;100;101;102	7	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);2 Oxidation (M)	2980.2421	0.24212218	134	P06748	NPM1	Nucleophosmin	yes	yes	1	2	1	4.6	0.49				2	3	22.037	22.037	2;3	5.8108E-08	17977	DP1145_14	133.87	116.4			311670000	1767	134	1662	2933;2934;2935;2936;2937	4265;4266;4267;4268;4269;4270;4271;4272;4273;4274;4275;4276;4277;4278;4279	4273	99;100;101;102	15	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);Oxidation (M)	2964.2472	0.24720756	134	P06748	NPM1	Nucleophosmin	yes	yes	1	1	1	4	0				2		22.631	22.631	2;3	7.0283E-07	18910	DP1145_14	124.46	98.868			59777000	1768	134	1662	2938;2939	4280;4281;4282;4283	4283	99;100;101;102	4	9606
MEDYQAAEETAFVVDEVSNIVK	Acetyl (Protein N-term);Oxidation (M)	2544.1578	0.15776537	387	P63172	DYNLT1	Dynein light chain Tctex-type 1	yes	yes	1	1	0	5	0					1	26.284	26.284	3	0.0023845	22920	DP1145_15	79.69	58.447			2039100	1769	387	1663	2940	4284;4285	4284	281	2	9606
MEEPQSDPSVEPPLSQETFSDLWK	Acetyl (Protein N-term);Oxidation (M)	2833.264	0.26402136	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	1	1	0	3.33	0.471			2	1		23.634	23.634	2;3	9.3661E-06	20876	DP1145_13	116.86	96.338			27687000	1770	116	1664	2941;2942;2943	4286;4287;4288;4289	4288	77	4	9606
MEEPQSDPSVEPPLSQETFSDLWK	Acetyl (Protein N-term)	2817.2691	0.26910674	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	1	0	0	3	0			1			24.225	24.225	2	2.8854E-05	21607	DP1145_13	117.13	113.16			5711800	1771	116	1664	2944	4290;4291;4292	4290		3	9606
MEGPLSVFGDR	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	194	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	1	0	3	0			1			21.878	21.878	2	0.025814	18396	DP1145_13	53.597	23.83			5393300	1772	194	1665	2945	4293	4293	163	1	9606
MEHGSIITQAR	Acetyl (Protein N-term);Oxidation (M)	1299.6241	0.62413446	44	O14595	CTDSP2	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2	yes	yes	1	1	0	1	0	1					18.252	18.252	2	0.037996	11512	DP1145_11	53.775	6.2005			0	1773	44	1666	2946	4294	4294	35	1	9606
MELITILEK	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	1	0	3	0.816		1	1	1		23.532	23.532	2	0.0041169	20100	DP1145_14	86.67	37.876			14755000	1774	484	1667	2947;2948;2949	4295;4296;4297	4297	369	3	9606
MELITILEK	Acetyl (Protein N-term)	1130.6257	0.62569758	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	3	0			1			25.48	25.48	2	0.038355	23343	DP1145_13	46.457	6.1052			2236600	1775	484	1667	2950	4298	4298		0	9606
MELKVWVDGVQR	Acetyl (Protein N-term);Oxidation (M)	1516.7708	0.77079869	591	Q8NHQ8	RASSF8	Ras association domain-containing protein 8	yes	yes	1	1	1	5	0					1	14.993	14.993	3	0.042173	6873	DP1145_15	48.568	28.853			0	1776	591	1668	2951	4299	4299	442	1	9606
MELQPPEASIAVVSIPR	Acetyl (Protein N-term);Oxidation (M)	1893.987	0.98699906	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	1	0	2	0		1				21.851	21.851	2	0.00189	18971	DP1145_12	135.02	82.771			0	1777	142	1669	2952	4300	4300	113	1	9606
MELSDANLQTLTEYLKK	Acetyl (Protein N-term);Oxidation (M)	2054.0242	0.024172425	322	P55060	CSE1L	Exportin-2	yes	yes	1	1	1	2	0		1				21.991	21.991	2	5.4041E-44	19219	DP1145_12	192.65	136.1			3246100	1778	322	1670	2953	4301;4302	4302	245	2	9606
MELSLENVTVEGNACK	Unmodified	1792.8335	0.83353488	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0		1				19.177	19.177	2	0.0024511	14916	DP1145_12	164.81	111.24			6265000	1779	529	1671	2954	4303	4303		1	9606
MENSLRCVWVPK	Acetyl (Protein N-term);Oxidation (M)	1575.7538	0.75376842	273	P43146	DCC	Netrin receptor DCC	yes	yes	1	1	1	3	0			1			17.378	17.378	2	0.038675	11789	DP1145_13	52.255	16.603			17926000	1780	273	1672	2955	4304	4304	206	0	9606
MERGGGGSGTGSRPEGTAR	Acetyl (Protein N-term);Oxidation (M)	1876.8446	0.84458535	650	Q96T17	MAP7D2	MAP7 domain-containing protein 2	yes	yes	1	1	2	4	0				1		23.239	23.239	2	0.010763	19704	DP1145_14	71.806	29.564			42581000	1781	650	1673	2956	4305;4306	4305	487	2	9606
METVVTSPMEGTVRK	2 Oxidation (M)	1695.8172	0.81715654	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	2	1	2	0		1				22.738	22.738	2	0.037085	20255	DP1145_12	48.981	17.796			1677600	1782	164	1674	2957	4307	4307	144;145	1	9606
MEVKPPPGRPQPDSGR	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	309	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	4	0				1		14.286	14.286	3	0.011806	6249	DP1145_14	66.568	30.812			54852000	1783	309	1675	2958	4308	4308	236	1	9606
MEVVEAAAAQLETLK	Acetyl (Protein N-term);Oxidation (M)	1659.8389	0.83893784	628	Q96HR8	NAF1	H/ACA ribonucleoprotein complex non-core subunit NAF1	yes	yes	1	1	0	3	0			1			24.296	24.296	2	0.00034024	21659	DP1145_13	128.36	91.938			2341000	1784	628	1676	2959	4309;4310;4311	4309	454	3	9606
MFGIPVVVAVNAFK	Oxidation (M)	1506.8269	0.82685701	165	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	2	0		1				21.895	21.895	2	0.0059063	19052	DP1145_12	103.7	60.065			1712000	1785	165	1677	2960	4312	4312	150	1	9606
MFLVNSFLK	Acetyl (Protein N-term);Oxidation (M)	1155.5998	0.59981719	115	P04632	CAPNS1	Calpain small subunit 1	yes	yes	1	1	0	4	0				1		24.016	24.016	2	0.027953	20794	DP1145_14	54.611	18.055			2412400	1786	115	1678	2961	4313	4313	76	1	9606
MFQLPVNNLGSLR	Acetyl (Protein N-term);Oxidation (M)	1545.7973	0.79734779	694	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	1	1	0	3	1		1		1		22.425	22.425	2	9.8024E-05	19798	DP1145_12	112.36	78.487			1290300	1787	694	1679	2962;2963	4314;4315;4316	4314	502	3	9606
MFSFNMFDHPIPR	Acetyl (Protein N-term);Oxidation (M)	1695.7538	0.75376842	613	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	1	1	0	4	0				1		21.947	21.947	2	0.037097	17902	DP1145_14	50.791	9.7112			0	1788	613	1680	2964	4317	4317	451	1	9606
MFSPWKISMFLSVR	Acetyl (Protein N-term);Oxidation (M)	1785.8946	0.894619	232	P30411	BDKRB2	B2 bradykinin receptor	yes	yes	1	1	1	4	0				1		14.987	14.987	4	0.023874	6968	DP1145_14	50.145	23.416			8758800	1789	232	1681	2965	4318	4318	180	1	9606
MGGMVSFR	Unmodified	883.40443	0.40442862	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.261	17.261	2	0.0058011	9881	DP1145_11	108.09	58.729			66219000	1790	441	1682	2966	4319	4319		1	9606
MGIYYIPVLGPAPR	Unmodified	1545.8378	0.83775605	666	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					21.538	21.538	2	0.0010876	16419	DP1145_11	105.52	71.63			3445000	1791	666	1683	2967	4320;4321;4322	4322		3	9606
MGNPENIEDAYVAVIRPK	Unmodified	2015.0146	0.014610792	38	O00522	KRIT1	Krev interaction trapped protein 1	yes	yes	0	0	1	5	0					1	20.989	20.989	3	0.0084551	15893	DP1145_15	84.41	25.751			185530000	1792	38	1684	2968	4323;4324	4324		2	9606
MGPLGLDHMASSIER	2 Oxidation (M)	1644.76	0.75997601	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			2			16.108	16.108	2;3	0.00082816	9556	DP1145_13	107.97	72.552			163940000	1793	310	1685	2969;2970	4325;4326;4327	4325	237;238	3	9606
MGSLPSRRK	Acetyl (Protein N-term);Oxidation (M)	1088.5761	0.57606205	701	Q9H6Q3	SLA2	Src-like-adapter 2	yes	yes	1	1	2	3	0			1			18.579	18.579	2	0.041402	13933	DP1145_13	54.611	16.884			963570000	1794	701	1686	2971	4328	4328	506	1	9606
MHLYLGAAK	Unmodified	1002.5321	0.53207197	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					16.023	16.023	2	0.00045098	7889	DP1145_11	118.69	80.448			189100000	1795	441;43	1687	2972	4329;4330	4329		2	9606
MIKPFFHSLSEK	Oxidation (M)	1478.7592	0.75917137	158	P10599	TXN	Thioredoxin	yes	yes	0	1	1	5	0					1	16.278	16.278	3	0.00025275	8831	DP1145_15	103.43	59.533			18285000	1796	158	1688	2973	4331;4332	4332	126	2	9606
MIPPTKPEIQAK	Oxidation (M)	1367.7483	0.74827234	571	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	1	1	2.5	0.5		1	1			14.103	14.103	3	0.0010529	7180	DP1145_12	98.754	63.794			4376600	1797	571	1689	2974;2975	4333;4334	4333	429	2	9606
MISAAQLLDELMGR	Acetyl (Protein N-term);Oxidation (M)	1604.7902	0.79021351	97	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	1	0	1	0	1					18.66	18.66	2	0.0066045	12120	DP1145_11	68.626	13.644			15106000	1798	97	1690	2976	4335	4335	61	1	9606
MISRMEK	Acetyl (Protein N-term);Oxidation (M)	951.45177	0.45177274	442	Q13103	SPP2	Secreted phosphoprotein 24	yes	yes	1	1	1	2	0		1				22.697	22.697	2	0.028144	20165	DP1145_12	64.776	7.3129			1749100	1799	442	1691	2977	4336	4336	340	1	9606
MKEIAEAYLGK	Oxidation (M)	1267.6482	0.64822394	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3.33	0.471			2	1		15.741	15.741	2;3	0.015213	8980	DP1145_13	71.153	34.469			140330000	1800	161	1692	2978;2979;2980	4337;4338;4339	4337	132	2	9606
MKEIAEAYLGK	Unmodified	1251.6533	0.65330932	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			16.577	16.577	3	0.0007456	10183	DP1145_13	86.114	58.687			70775000	1801	161	1692	2981	4340;4341	4340		2	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	Oxidation (M)	3275.6173	0.61726475	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			21.478	21.478	3	2.5737E-06	17719	DP1145_13	77.573	57.589			85408000	1802	156	1693	2982	4342;4343	4342	122	2	9606
MKETAENYLGHTAK	Unmodified	1591.7664	0.7664416	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	3	0			2			14.489	14.489	2;3	4.3673E-43	6849	DP1145_13	193.45	133.11			82082000	1803	255	1694	2983;2984	4344;4345;4346	4344		2	9606
MKETAENYLGHTAK	Oxidation (M)	1607.7614	0.76135622	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			13.954	13.954	3	0.030327	6332	DP1145_13	68.751	39.688			9355300	1804	255	1694	2985	4347	4347	193	0	9606
MKFNPFVTSDR	Oxidation (M)	1356.6496	0.64962092	340	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	1	1	5	0					1	16.657	16.657	3	0.03242	9460	DP1145_15	74.611	46.227			25529000	1805	340	1695	2986	4348	4348	254	0	9606
MKLNISFPATGCQK	Oxidation (M)	1609.7956	0.79563323	369	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	4	0				1		16.959	16.959	3	0.0014887	10375	DP1145_14	133.98	103.12			32374000	1806	369	1696	2987	4349	4349	268	0	9606
MKQTGQVYAMK	Oxidation (M)	1299.6315	0.63152802	428	Q09013	DMPK	Myotonin-protein kinase	yes	yes	0	1	1	5	0					1	17.58	17.58	2	0.039448	10822	DP1145_15	96.668	12.053			0	1807	428	1697	2988	4350	4350	309	1	9606
MKRHEMVAK	Acetyl (Protein N-term);Oxidation (M)	1186.5951	0.59508293	418	Q03924	ZNF117	Zinc finger protein 117	yes	yes	1	1	2	1	0	1					14.962	14.962	2	0.0019636	6372	DP1145_11	101.33	16.759			9206600	1808	418	1698	2989	4351	4351	305	1	9606
MKTPVQYSQQQNSPQK	Unmodified	1890.9258	0.92579578	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				14.468	14.468	3	1.4209E-15	7612	DP1145_12	167.92	74.68			5537400	1809	278	1699	2990	4352	4352		1	9606
MKVELCSFSGYK	Oxidation (M)	1463.6789	0.67887214	404	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	1	5	0					1	16.623	16.623	3	0.041369	9431	DP1145_15	66.708	42.891			32087000	1810	404	1700	2991	4353	4353	299	0	9606
MLDMGFEPQIR	2 Oxidation (M)	1367.6214	0.62135726	193;611;42	Q92841;O15523;P17844;O00571	DDX17;DDX3Y;DDX5;DDX3X	Probable ATP-dependent RNA helicase DDX17;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;ATP-dependent RNA helicase DDX3X	no	no	0	2	0	3	0			1			17.778	17.778	2	0.02074	12253	DP1145_13	70.908	35.684			104780000	1811	611;193;42	1701	2992	4354	4354	29;30;160;161	1	9606
MLGPEGGEGFVVK	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	313	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	1	0	4	0				1		20.062	20.062	2	0.0025033	15239	DP1145_14	82.261	46.75			20873000	1812	313	1702	2993	4355	4355	239	1	9606
MLLHEGQHPAQLR	Oxidation (M)	1544.7882	0.78818009	518	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	1	0	4	0				1		14.323	14.323	3	0.0052884	6350	DP1145_14	85.522	54.648			0	1813	518	1703	2994	4356	4356	396	1	9606
MLPTIIADNAGYDSADLVAQLR	Oxidation (M)	2362.1839	0.18386096	399	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	3	0			1			21.771	21.771	2	6.264E-70	18063	DP1145_13	218.16	187.68			0	1814	399	1704	2995	4357	4357	295	1	9606
MLQPCGPPADKPEEN	Oxidation (M)	1697.7389	0.73890622	676	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	1	1	5	0					1	15.027	15.027	2	0.019847	6962	DP1145_15	128.08	94.672			30620000	1815	676	1705	2996	4358	4358	498	1	9606
MLSMLRTMTR	Acetyl (Protein N-term);2 Oxidation (M)	1312.6301	0.63014781	599	Q8WWU7	ITLN2	Intelectin-2	yes	yes	1	2	1	3	0			1			23.52	23.52	2	0.037765	20619	DP1145_13	49.423	10.647			8988700	1816	599	1706	2997	4359	4359	443;444	1	9606
MLTGPVYSQSTALTHK	Oxidation (M)	1748.8767	0.87672033	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	1	0	2	0		1				16.179	16.179	3	0.035257	10335	DP1145_12	57.788	33.832			31622000	1817	566	1707	2998	4360	4360	427	1	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	2 Oxidation (M)	2881.2146	0.21458552	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.225	20.225	3	7.3357E-06	14505	DP1145_11	117.35	105.56			95038000	1818	441	1708	2999	4361	4361	326;327	1	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	Oxidation (M)	2865.2197	0.2196709	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.561	20.561	3	2.8285E-09	14990	DP1145_11	142.23	134.72			64721000	1819	441	1708	3000	4362;4363	4362	326;327	2	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	Unmodified	2849.2248	0.22475628	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.008	21.008	3	2.4752E-05	15720	DP1145_11	104.3	91.748			23390000	1820	441	1708	3001	4364;4365	4364		2	9606
MNVLADALK	Oxidation (M)	989.52157	0.52156686	355	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	1	0	5	0					1	17.592	17.592	2	0.014424	10886	DP1145_15	104.2	32.855			121810000	1821	355	1709	3002	4366	4366	261	1	9606
MPCESSPPESADTPTSTR	Oxidation (M)	1964.8092	0.80917063	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2.5	0.5		1	1			14.562	14.562	2	4.3503999999999996E-110	7857	DP1145_12	234.87	181.42			31552000	1822	278	1710	3003;3004	4367;4368;4369	4368	216	3	9606
MPCESSPPESADTPTSTR	Unmodified	1948.8143	0.814256	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				15.368	15.368	2	4.6029E-18	8954	DP1145_12	174.46	151.45			7272100	1823	278	1710	3005	4370;4371	4370		2	9606
MPCQSLQPEPINTPTHTK	Oxidation (M)	2093.9874	0.98740976	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	3	0.816		1	1	1		15.368	15.368	3	0.00022136	8922	DP1145_12	142.4	107.3			247820000	1824	278	1711	3006;3007;3008	4372;4373;4374;4375	4372	217	3	9606
MPCQSLQPEPINTPTHTK	Unmodified	2077.9925	0.99249514	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.061	16.061	3	0.0009065	9992	DP1145_12	128.82	94.439			0	1825	278	1711	3009	4376	4376		1	9606
MPCTEDYLSLILNR	Oxidation (M)	1739.8222	0.82224192	12	CON__P02769			yes	yes	0	1	0	2.67	1.25	1		1	1		21.991	21.991	2	8.3551E-31	18321	DP1145_13	183.85	128.05		+	34956000	1826	12	1712	3010;3011;3012	4377;4378;4379;4380;4381	4379	5	5	9606
MPCTEDYLSLILNR	Unmodified	1723.8273	0.82732729	12	CON__P02769			yes	yes	0	0	0	3	0			1			22.552	22.552	2	0.0013807	19238	DP1145_13	126.19	75.102		+	9314900	1827	12	1712	3013	4382	4382		1	9606
MPEGAQGLSLSKPSPSLGCGR	Acetyl (Protein N-term);Oxidation (M)	2186.046	0.045987275	703	Q9H7P9	PLEKHG2	Pleckstrin homology domain-containing family G member 2	yes	yes	1	1	1	5	0					1	30.499	30.499	3	0.034149	26679	DP1145_15	51.566	21.03			0	1828	703	1713	3014	4383	4383	507	1	9606
MPGGPKPGGGPGLSTPGGHPKPPHR	Oxidation (M)	2385.2124	0.21241617	209	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	2	2.5	0.5		1	1			13.853	13.853	4	0.00036166	6815	DP1145_12	87.496	64.3			16500000	1829	209	1714	3015;3016	4384;4385;4386;4387	4384	170	4	9606
MPGPPRSLEMGLLTFR	Acetyl (Protein N-term);Oxidation (M)	1858.9434	0.9433601	81	O75437	ZNF254	Zinc finger protein 254	yes	yes	1	1	1	1	0	1					21.552	21.552	2	0.016381	16410	DP1145_11	62.799	22.784			14044000	1830	81	1715	3017	4388	4388	58	1	9606
MPLPAPSLSHQPPPAPR	Oxidation (M)	1807.9403	0.94032364	299	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	1	0	2	0		1				16.112	16.112	3	0.036838	10140	DP1145_12	59.261	31.172			6681300	1831	299	1716	3018	4389	4389	234	1	9606
MPVIKPDIANWELSVK	Oxidation (M)	1854.9914	0.99135615	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	1.75	0.829	2	1	1			19.278	19.278	3	0.0026987	13202	DP1145_11	110.84	71.866			519750000	1832	123	1717	3019;3020;3021;3022	4390;4391;4392;4393;4394	4391	85	5	9606
MPVIKPDIANWELSVK	Unmodified	1838.9964	0.99644153	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			19.982	19.982	3	0.028785	15589	DP1145_13	65.038	32.786			256060000	1833	123	1717	3023	4395	4395		1	9606
MQLPSAAGLHPTGHQSK	Oxidation (M)	1774.8785	0.87845166	489	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	1	0	4	0				1		14.385	14.385	3	0.019698	6540	DP1145_14	67.846	25.458			6448100	1834	489	1718	3024	4396	4396	370	1	9606
MQNDAGEFVDLYVPR	Acetyl (Protein N-term);Oxidation (M)	1810.8196	0.81959938	388	P63220	RPS21	40S ribosomal protein S21	yes	yes	1	1	0	5	0					1	22.32	22.32	2	0.0022526	17633	DP1145_15	102.87	70.618			0	1835	388	1719	3025	4397	4397	282	1	9606
MQSDDVIWDTLGNK	Acetyl (Protein N-term)	1662.7559	0.75593649	681	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	1	0	0	4	0				1		23.087	23.087	2	0.00026684	19568	DP1145_14	110.66	77.604			2139700	1836	681	1720	3026	4398	4398		1	9606
MREIVHLQAGQCGNQIGAK	Unmodified	2109.0572	0.057161084	394;113	P04350;P68371	TUBB4A;TUBB4B	Tubulin beta-4A chain;Tubulin beta-4B chain	no	no	0	0	1	3	0			2			15.67	15.67	2;3	0.0025873	8943	DP1145_13	132.25	0			192030000	1837	113;394	1721	3027;3028	4399;4400	4399		2	9606
MRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVK	Oxidation (M)	4399.2363	0.23631383	237	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	1	2	5	0					1	22.391	22.391	4	2.6555E-08	17686	DP1145_15	61.97	48.934			21902000	1838	237	1722	3029	4401	4401	185	1	9606
MSATFIGNSTAIQELFK	Oxidation (M)	1872.9291	0.92914983	394;464	P68371;Q13885;Q9BVA1	TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3	1.41	1	1	1	1	1	21.615	21.615	2	3.0024E-43	17936	DP1145_13	198.37	28.366			184960000	1839	394;464	1723	3030;3031;3032;3033;3034	4402;4403;4404;4405;4406	4404	294	5	9606
MSDQAPKVPEEMFREVK	Acetyl (Protein N-term);2 Oxidation (M)	2093.9762	0.97617637	544	Q6ZW49	PAXIP1	PAX-interacting protein 1	yes	yes	1	2	2	3	0			1			15.337	15.337	3	0.02979	8676	DP1145_13	48.899	27.231			96459000	1840	544	1724	3035	4407	4407	418;419	1	9606
MSFSSNLNHYGMTHVASVSDVLLDNSFTPPCQR	2 Oxidation (M)	3742.6814	0.6814147	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					19.736	19.736	4	1.0862E-10	13771	DP1145_11	80.009	65.185			31489000	1841	441	1725	3036	4408	4408	328;329	1	9606
MSGECAPNVSVSVSTSHTTISGGGSR	Oxidation (M)	2580.1544	0.1544281	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	2.5	1.12	1	1	1	1		16.157	16.157	3	2.9482E-57	8064	DP1145_11	199.89	165.63		+	179050000	1842	13	1726	3037;3038;3039;3040	4409;4410;4411;4412;4413;4414	4410	9	6	9606
MSMKEVDEQMLNVQNK	3 Oxidation (M)	1970.8747	0.87474777	394;137;464	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	3	1	3.5	0.5			2	2		14.512	14.512	2;3	0.0008106	7143	DP1145_13	125.67	111.67			178350000	1843	137;394;464	1727	3041;3042;3043;3044	4415;4416;4417;4418	4415	106;108;109	4	9606
MSMKEVDEQMLNVQNK	2 Oxidation (M)	1954.8798	0.87983315	394;137;464	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	2	1	3	0			2			15.138	15.138	2;3	0.0005448	7941	DP1145_13	116.87	100.45			21291000	1844	137;394;464	1727	3045;3046	4419;4420	4419	106;108;109	2	9606
MSMLKPSGLK	Acetyl (Protein N-term);Oxidation (M)	1148.5934	0.5933516	233	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	1	1	1	4	0				1		15.841	15.841	2	0.015213	8646	DP1145_14	77.732	7.9074			0	1845	233	1728	3047	4421	4421	181	1	9606
MSNNMAKIAEAR	Acetyl (Protein N-term);2 Oxidation (M)	1408.6439	0.64388362	757	Q9UK08	GNG8	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8	yes	yes	1	2	1	5	0					1	28.14	28.14	2	0.040843	24602	DP1145_15	40.994	18.655			0	1846	757	1729	3048	4422	4422	537;538	1	9606
MSPYKDILETHLR	Oxidation (M)	1617.8185	0.81847717	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	1	0	1					16.988	16.988	3	0.0079222	9606	DP1145_11	74.987	61.271			38732000	1847	400	1730	3049	4423	4423	298	1	9606
MSQVAPSLSALIGEAVGAR	Oxidation (M)	1871.9775	0.977497	41	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	3	0			1			22.4	22.4	2	3.0437E-49	18963	DP1145_13	207.08	146.92			0	1848	41	1731	3050	4424	4424	28	1	9606
MSSTLAKIAEIEAEMARTQK	2 Oxidation (M)	2239.1188	0.11881787	769	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	2	2	5	0					1	19.292	19.292	3	0.034401	13423	DP1145_15	58.427	20.37			0	1849	769	1732	3051	4425	4425	541;542	1	9606
MSVEADINGLRR	Oxidation (M)	1375.6878	0.68779734	5;15	P02533;CON__P02533;CON__Q9QWL7;CON__Q6IFX2;CON__P08727;P08727	KRT14;KRT19	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 19	no	no	0	1	1	1	0	1					16.488	16.488	2	0.0024636	8672	DP1145_11	99.013	50.573		+	23476000	1850	5;15	1733	3052	4426	4426	2	1	9606
MSVQPTVSLGGFEITPPVVLR	Oxidation (M)	2242.2031	0.20313984	134	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	3.75	0.968		1	2	3	2	22.232	22.232	2;3	5.4272999999999995E-186	17354	DP1145_15	260.98	209.86			4907800000	1851	134	1734	3053;3054;3055;3056;3057;3058;3059;3060	4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456	4456	103	30	9606
MSVQPTVSLGGFEITPPVVLR	Unmodified	2226.2082	0.20822522	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4.14	0.833			2	2	3	22.458	22.458	2;3	1.3026999999999999E-104	17847	DP1145_15	197.41	178.37			954890000	1852	134	1734	3061;3062;3063;3064;3065;3066;3067	4457;4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474	4474		18	9606
MTDQEAIQDLWQWR	Oxidation (M)	1834.8308	0.83083277	134	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	3.17	1.34	1	1	1	2	1	21.839	21.839	2;3	0	18220	DP1145_13	386.44	305.52			2955699999.9999995	1853	134	1735	3068;3069;3070;3071;3072;3073	4475;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497	4480	104	23	9606
MTDQEAIQDLWQWR	Unmodified	1818.8359	0.83591814	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4.17	0.687			1	3	2	22.579	22.579	2;3	0	19143	DP1145_13	317.31	258.19			1111500000	1854	134	1735	3074;3075;3076;3077;3078;3079	4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509	4498		12	9606
MTEAVPEGCAVKWDSR	Oxidation (M)	1850.8291	0.82911821	803				yes	yes	0	1	1	4	0				1		21.844	21.844	2	0.043467	17393	DP1145_14	101.38	36.202	+		85952000	1855	803	1736	3080	4510	4510	559	1	9606
MTLDDFR	Oxidation (M)	912.40112	0.40111738	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	0.707	1	2	1			16.614	16.614	1;2	8.0717E-18	8941	DP1145_11	153.88	113.31		+	374030000	1856	20	1737	3081;3082;3083;3084	4511;4512;4513;4514;4515	4512	16	5	9606
MTLNGGGSGAGGSRGGGQER	Acetyl (Protein N-term);Oxidation (M)	1862.8289	0.82893529	321	P55042	RRAD	GTP-binding protein RAD	yes	yes	1	1	1	4	0				1		23.97	23.97	2	0.0050497	20722	DP1145_14	76.073	25.589			25924000	1857	321	1738	3085	4516	4516	241	1	9606
MTLQGRADLSGNQGNAAGR	Acetyl (Protein N-term);Oxidation (M)	1973.9337	0.93373471	690	Q9H0B3	KIAA1683	Uncharacterized protein KIAA1683	yes	yes	1	1	1	4	0				1		17.229	17.229	3	0.043384	10864	DP1145_14	41.905	10.932			0	1858	690	1739	3086	4517	4517	500	1	9606
MTQNPNYYNLQGISHR	Unmodified	1934.9057	0.90572904	86	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					17.042	17.042	3	0.034568	9555	DP1145_11	48.899	34.019			0	1859	86	1740	3087	4518	4518		1	9606
MTSAPSQPLQTISR	Oxidation (M)	1531.7664	0.7664416	552	Q7L590	MCM10	Protein MCM10 homolog	yes	yes	0	1	0	2	0		1				16.128	16.128	2	0.0041474	10117	DP1145_12	131.83	92.204			5631400	1860	552	1741	3088	4519	4519	420	0	9606
MVAAVACAQVPK	Unmodified	1243.6417	0.64169877	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		16.291	16.291	2	1.9994E-06	9743	DP1145_13	143.28	104.57			868350000	1861	710	1742	3089;3090;3091	4520;4521;4522;4523;4524	4521		5	9606
MVAAVACAQVPK	Oxidation (M)	1259.6366	0.6366134	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2.25	1.3	2		1	1		15.469	15.469	2	8.8121E-11	8438	DP1145_13	162.49	99.31			1312100000	1862	710	1742	3092;3093;3094;3095	4525;4526;4527;4528;4529	4527	512	5	9606
MVDHLLPVDENFSSPK	Acetyl (Protein N-term);Oxidation (M)	1884.8928	0.89276432	754	Q9UIH9	KLF15	Krueppel-like factor 15	yes	yes	1	1	0	3	0			1			23.501	23.501	2	0.021096	20565	DP1145_13	64.64	29.89			0	1863	754	1743	3096	4530	4530	535	1	9606
MVEMQKDPMEPPR	2 Oxidation (M)	1618.7153	0.715334	457	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	2	1	3	0			1			14.339	14.339	3	0.038934	6775	DP1145_13	51.875	22.972			6382600	1864	457	1744	3097	4531;4532	4532	350;351	2	9606
MVIPGGIDVHTR	Oxidation (M)	1309.6813	0.6812554	503	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	1	0	2	0		1				16.275	16.275	3	0.031254	10328	DP1145_12	57.175	41.285			20467000	1865	503	1745	3098	4533	4533	383	1	9606
MVLCSQQWK	Oxidation (M)	1194.5525	0.55254942	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	1	0	2	0		1				16.179	16.179	2	1.1595E-06	10198	DP1145_12	143.61	100.53			23255000	1866	189	1746	3099	4534	4534	156	0	9606
MVNHFIAEFK	Unmodified	1234.6169	0.61686423	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			17.578	17.578	3	0.025274	11929	DP1145_13	56.043	28.894			58659000	1867	161	1747	3100	4535	4535		1	9606
MVNHFIAEFK	Oxidation (M)	1250.6118	0.61177885	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			2			16.911	16.911	2;3	1.3493E-05	10832	DP1145_13	142.43	90.501			0	1868	161	1747	3101;3102	4536;4537	4537	133	2	9606
MVPGPPESVVRFFLWFCFLLPPTRK	Acetyl (Protein N-term)	3061.6074	0.60743253	525	Q5T742	C10orf25	Uncharacterized protein C10orf25	yes	yes	1	0	2	5	0					1	22.12	22.12	3	0.01294	17470	DP1145_15	44.953	18.164			45184000	1869	525	1748	3103	4538	4538		1	9606
MVQEAEKYKAEDEVQR	Oxidation (M)	1967.9259	0.92585536	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	2	2	1	1		1			14.038	14.038	3	0.0045416	6556	DP1145_13	133.23	97.571			44525000	1870	156	1749	3104;3105	4539;4540	4540	123	2	9606
MVQEAEKYKAEDEVQR	Unmodified	1951.9309	0.93094074	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	2	3	0			1			14.595	14.595	3	0.014611	7192	DP1145_13	93.716	51.46			0	1871	156	1749	3106	4541	4541		1	9606
MWFQWSEQR	Oxidation (M)	1312.5659	0.56589129	48	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	1	0	1	0	1					19.64	19.64	2	0.033861	13639	DP1145_11	105.57	81.413			0	1872	48	1750	3107	4542	4542	39	1	9606
MWSIENIAFGSGGGLLQK	Oxidation (M)	1922.956	0.95603328	275	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	1	0	3	0			1			22.176	22.176	2	1.5212E-33	18556	DP1145_13	187.11	117.01			4937900	1873	275	1751	3108	4543	4543	207	1	9606
NAADPISGDFK	Unmodified	1133.5353	0.53530267	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.976	16.976	2	0.0014053	11518	DP1145_12	104.22	53.615			38962000	1874	278	1752	3109	4544;4545	4545		2	9606
NAADPISGDFKEISSVK	Unmodified	1776.8894	0.8893935	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				18.276	18.276	3	2.6965E-16	13596	DP1145_12	171.78	136.06			94548000	1875	278	1753	3110	4546	4546		1	9606
NAAENMLEILGFK	Unmodified	1448.7334	0.73335055	105	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3.5	0.5			1	1		23.52	23.52	2	4.5565E-42	20541	DP1145_13	192.5	159.44			15489000	1876	105	1754	3111;3112	4547;4548;4549	4547		3	9606
NAAIAVLEELKK	Unmodified	1297.7606	0.76055158	105	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	3	0			1			18.779	18.779	2	0.0014276	13835	DP1145_13	127.51	66.353			56866000	1877	105	1755	3113	4550	4550		1	9606
NAAPPPSNTEAPPGETR	Unmodified	1704.8067	0.80672651	687	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2.67	0.471		1	2			14.153	14.153	2	0.002774	7316	DP1145_12	113.69	83.555			8850100	1878	687	1756	3114;3115;3116	4551;4552;4553	4551		3	9606
NAEPDEQDFEK	Unmodified	1320.547	0.54698957	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	3	1		1		1		15.482	15.482	2	7.0236E-18	9215	DP1145_12	166.07	103.41			44745000	1879	472	1757	3117;3118	4554;4555;4556	4555		2	9606
NAGNCLSPAVIVGLLK	Unmodified	1624.8971	0.89706184	54	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	4	0				1		21.891	21.891	2	0.002264	17789	DP1145_14	150.09	117.09			4452900	1880	54	1758	3119	4557	4557		1	9606
NAGVEGSLIVEK	Unmodified	1214.6507	0.65066678	159	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			16.821	16.821	2	0.0029143	11155	DP1145_12	97.813	50.211			98748000	1881	159	1759	3120;3121	4558;4559	4558		2	9606
NAHSATTWSGQYVGGAEAR	Unmodified	1961.898	0.89800113	27	CON__Streptavidin			yes	yes	0	0	0	4.34	1.31	4	3	2	2	36	23.519	23.519	2;3;4	0	8902	DP1145_14	422.25	388.71		+	200440000000	1882	27	1760	3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146;3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161;3162;3163;3164;3165;3166;3167;3168	4560;4561;4562;4563;4564;4565;4566;4567;4568;4569;4570;4571;4572;4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617;4618;4619;4620;4621;4622;4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633;4634;4635;4636;4637;4638;4639;4640;4641;4642;4643;4644;4645;4646;4647;4648;4649;4650;4651;4652;4653;4654;4655;4656;4657;4658;4659;4660;4661;4662;4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686;4687;4688;4689;4690;4691	4587		131	
NALANPLYCPDYR	Unmodified	1565.7297	0.72966216	208	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		17.959	17.959	2	0.0050397	13154	DP1145_14	107.11	71.449			1796899999.9999998	1883	208	1761	3169	4692	4692		1	9606
NALESYAFNMK	Unmodified	1286.5965	0.59652272	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			19.079	19.079	2	4.2145E-43	14191	DP1145_13	193.38	152.6			356930000	1884	156	1762	3170	4693;4694	4693		2	9606
NALESYAFNMK	Oxidation (M)	1302.5914	0.59143734	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			17.878	17.878	2	0.017186	12312	DP1145_13	120.31	70.77			896820000	1885	156	1762	3171	4695	4695	124	0	9606
NAMLETPELPAVFDGVK	Acetyl (Protein N-term);Oxidation (M)	1887.9288	0.92881548	148	P08910	ABHD2	Abhydrolase domain-containing protein 2	yes	yes	1	1	0	4	0				1		20.702	20.702	2	0.03979	16112	DP1145_14	48.659	37.424			0	1886	148	1763	3172	4696	4696	119	1	9606
NAPAIIFIDELDAIAPK	Unmodified	1809.9877	0.98765098	323	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	3	0			1			23.975	23.975	2	0.0023857	21340	DP1145_13	103.97	75.591			6275100	1887	323	1764	3173	4697;4698	4698		2	9606
NAPNDASYDAVR	Unmodified	1291.5793	0.57929275	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					15.147	15.147	2	0.03607	6595	DP1145_11	80.24	53.797			0	1888	605	1765	3174	4699	4699		1	9606
NAPVTFIVDGAVVK	Unmodified	1428.7977	0.79766537	700	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		19.461	19.461	2	0.0052289	13956	DP1145_14	99.752	74.897			273240000	1889	700	1766	3175	4700	4700		1	9606
NAQEALQAIETK	Unmodified	1314.6779	0.67794416	59	O43592	XPOT	Exportin-T	yes	yes	0	0	0	1	0	1					17.561	17.561	2	1.683E-05	10611	DP1145_11	138.76	79.695			24592000	1890	59	1767	3176	4701	4701		1	9606
NASEDNHSENTLYSNDNGSNLQR	Unmodified	2578.0916	0.091628152	586	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	3	0			1			15.337	15.337	3	0.001974	8923	DP1145_13	80.412	70.064			90861000	1891	586	1768	3177	4702	4702		1	9606
NAVITVPAYFNDSQR	Unmodified	1693.8424	0.84238373	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.38	19.38	2	0.00096891	14767	DP1145_13	110.98	70.361			75489000	1892	255	1769	3178	4703	4703		1	9606
NAVPITPTLNR	Unmodified	1194.6721	0.67207093	8	CON__P02663			yes	yes	0	0	0	1	0	1					16.767	16.767	2	0.0012016	9269	DP1145_11	105.52	59.095		+	137250000	1893	8	1770	3179	4704	4704		1	
NCIVLIDSTPYR	Unmodified	1449.7286	0.72859953	354	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	4	0				1		18.96	18.96	2	0.014587	13539	DP1145_14	129.85	64.694			32018000	1894	354	1771	3180	4705	4705		0	9606
NCLTNFHGMDLTR	Oxidation (M)	1593.7028	0.70279548	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		16.561	16.561	3	0.038759	9795	DP1145_14	61.03	31.007			0	1895	339	1772	3181	4706	4706	253	1	9606
NCLTNFHGMDLTR	Unmodified	1577.7079	0.70788086	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.967	17.967	3	0.011507	12149	DP1145_14	93.649	67.023			29541000	1896	339	1772	3182	4707	4707		0	9606
NCPHIVVGTPGR	Unmodified	1305.6612	0.66118866	462	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	3	0			1			14.838	14.838	3	0.003136	7437	DP1145_13	73.082	37.372			6915000	1897	462	1773	3183	4708	4708		1	9606
NCPHVVVGTPGR	Unmodified	1291.6455	0.6455386	30	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	4	0				1		14.186	14.186	3	4.6041E-07	6192	DP1145_14	137.01	111.3			2706200	1898	30	1774	3184	4709	4709		1	9606
NDLAVVDVR	Unmodified	999.53491	0.53490874	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			17.077	17.077	2	6.1684E-45	11691	DP1145_12	168.26	64.202			1117900000	1899	199	1775	3185;3186	4710;4711	4710		1	9606
NDLSPASSGNAVYDFFIGR	Unmodified	2028.9541	0.95411902	483	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					22.611	22.611	2	1.3689E-131	17928	DP1145_11	283.05	218.82			10496000	1900	483	1776	3187	4712;4713	4713		2	9606
NDTKEDVFVHQTAIK	Unmodified	1743.8792	0.87916317	390;186	P67809;Q9Y2T7;P16989	YBX1;YBX2;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3	no	no	0	0	1	3.5	0.5			1	1		15.373	15.373	3	1.4423E-06	7921	DP1145_14	180.7	125.5			147230000	1901	390;186	1777	3188;3189	4714;4715	4715		1	9606
NDVMNLLESAGFSR	Oxidation (M)	1567.7301	0.73005609	765	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	1	0	2	0		1				21.018	21.018	2	0.0036065	17831	DP1145_12	130.15	85.59			3251200	1902	765	1778	3190	4716;4717	4716	540	2	9606
NEDEDSPNKLYTLVTYVPVTTFK	Unmodified	2672.3221	0.32212858	378	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	1	5	0					1	21.453	21.453	3	0.00061223	16446	DP1145_15	121.65	97.365			28378000	1903	378	1779	3191	4718	4718		0	9606
NEEPSEEEIDAPKPK	Unmodified	1710.7948	0.79482442	721	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	1	0	1					14.762	14.762	3	0.0022755	6114	DP1145_11	87.932	46.288			5654500	1904	721	1780	3192	4719;4720	4719		2	9606
NELEIPGQYDGR	Unmodified	1389.6525	0.6524577	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	2	0		1				17.976	17.976	2	0.04093	12957	DP1145_12	120.63	29.365			6261600	1905	400	1781	3193	4721	4721		0	9606
NELFLPGR	Unmodified	944.50797	0.50796571	443	Q13123	IK	Protein Red	yes	yes	0	0	0	4	0				1		18.18	18.18	2	3.1831E-05	12370	DP1145_14	117.16	58.556			0	1906	443	1782	3194	4722	4722		1	9606
NFDLTAIPCANHK	Unmodified	1499.7191	0.71909747	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					17.961	17.961	2;3	0.017751	10909	DP1145_11	125.68	78.454			410480000	1907	441	1783	3195;3196	4723;4724	4724		0	9606
NFGIGQDIQPK	Unmodified	1215.6248	0.62478638	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		17.559	17.559	2	0.035356	11316	DP1145_14	119.75	62.4			179000000	1908	366	1784	3197	4725	4725		0	9606
NFILDQTNVSAAAQR	Unmodified	1646.8376	0.8376327	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2.33	1.25	1	1		1		18.568	18.568	2	5.4704E-104	13973	DP1145_12	231.92	154.54			219070000	1909	409	1785	3198;3199;3200	4726;4727;4728;4729;4730	4727		5	9606
NFYQEHPDLAR	Unmodified	1388.6473	0.64731274	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			15.999	15.999	3	0.013045	9392	DP1145_13	75.566	51.855			466150000	1910	193	1786	3201	4731;4732	4732		2	9606
NGIAFMGPPSQAMWALGDK	Unmodified	1989.9441	0.94408839	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.771	21.771	2	0.0018266	16751	DP1145_11	146.27	116.97			6762200	1911	441	1787	3202	4733	4733		1	9606
NGIAFMGPPSQAMWALGDK	Oxidation (M)	2005.939	0.93900301	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.718	20.718	2	0.037427	15316	DP1145_11	95.195	43.909			17890000	1912	441	1787	3203	4734	4734	330	0	9606
NGIDILVGTPGR	Unmodified	1210.667	0.66698555	721;660	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	2	0		1				18.877	18.877	2	0.00038069	14673	DP1145_12	128.81	77.933			14678000	1913	721;660	1788	3204	4735	4735		1	9606
NHDHQEIAVPVANLK	Unmodified	1683.8693	0.86926718	85	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	5	0					1	16.011	16.011	3	0.0031993	8444	DP1145_15	87.447	52.763			58689000	1914	85	1789	3205	4736	4736		1	9606
NHPGLLLMDTTFR	Unmodified	1513.7711	0.77113304	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.8	0.748	2	2	1			19.247	19.247	2;3	3.672E-16	15062	DP1145_12	168.98	100.63			633440000	1915	164	1790	3206;3207;3208;3209;3210	4737;4738;4739;4740;4741;4742;4743;4744	4740		8	9606
NHPGLLLMDTTFR	Oxidation (M)	1529.766	0.76604767	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			17.927	17.927	3	3.8447E-06	12349	DP1145_13	140.01	79.316			442200000	1916	164	1790	3211;3212;3213	4745;4746;4747;4748;4749	4748	146	5	9606
NIDDGTSDRPYSHALVAGIDR	Unmodified	2271.088	0.087986745	344	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	5	0					1	17.078	17.078	4	0.030187	10196	DP1145_15	62.966	43.386			96829000	1917	344	1791	3214	4750	4750		0	9606
NIEDVIAQGIGK	Unmodified	1255.6772	0.67721588	126	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	20.173	20.173	2	2.0997E-08	14702	DP1145_15	155	86.156			141430000	1918	126	1792	3215	4751;4752	4751		2	9606
NIFCTIMTSEDFLDAFEK	Oxidation (M)	2195.9755	0.97550767	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	1	0	3	0			1			23.916	23.916	2	0.03915	21154	DP1145_13	93.478	73.874			5461700	1919	520	1793	3216	4753	4753	403	1	9606
NIFCTIMTSEDFLDAFEK	Unmodified	2179.9806	0.98059305	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	3	0			2			24.704	24.704	2	4.0002E-05	22304	DP1145_13	193.16	152.64			2971700	1920	520	1793	3217;3218	4754;4755	4755		2	9606
NIIHGSDSVESAEK	Unmodified	1484.7107	0.71070086	181	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	3	2	1				1	14.516	14.516	2;3	0.016284	6220	DP1145_15	54.199	17.671			14739000	1921	181	1794	3219;3220	4756;4757	4757		2	9606
NIILEEGKEILVGDVGQTVDDPYATFVK	Unmodified	3061.5859	0.58594784	211	P23528	CFL1	Cofilin-1	yes	yes	0	0	1	5	0					1	22.12	22.12	3	1.8157E-13	17454	DP1145_15	139.31	121.06			45184000	1922	211	1795	3221	4758	4758		1	9606
NIIVGFAR	Unmodified	888.51814	0.51813647	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		18.071	18.071	2	7.2049E-21	12288	DP1145_14	163.84	67.797			1867199999.9999998	1923	124	1796	3222;3223;3224	4759;4760;4761;4762	4761		4	9606
NILEESLCELVAK	Unmodified	1516.7807	0.78069468	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.184	22.184	2	0.0063642	17309	DP1145_11	115.7	53.935			3498400	1924	400	1797	3225	4763	4763		1	9606
NILFVITKPDVYK	Unmodified	1548.8916	0.89156576	29	E9PAV3;Q9BZK3	NACA;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein	yes	no	0	0	1	4	0				1		19.461	19.461	2	0.00068204	14270	DP1145_14	135.1	80.755			26165000	1925	29	1798	3226	4764	4764		1	9606
NINTFVETPVQK	Unmodified	1388.73	0.72997974	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				17.476	17.476	2	0.00093806	12446	DP1145_12	123.75	77.59			31287000	1926	278	1799	3227	4765	4765		1	9606
NIPLLFLQNITGFMVGR	Oxidation (M)	1948.0604	0.060438772	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.2	1.33	1		2	1	1	24.156	24.156	2;3	0.0015322	20066	DP1145_11	123.26	78.692			91519000	1927	710	1800	3228;3229;3230;3231;3232	4766;4767;4768;4769;4770;4771;4772;4773	4766	513	8	9606
NIPLLFLQNITGFMVGR	Unmodified	1932.0655	0.06552415	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			25.458	25.458	2;3	2.6968E-32	23242	DP1145_13	223.22	151.02			44046000	1928	710	1800	3233;3234	4774;4775;4776;4777;4778;4779;4780	4776		7	9606
NITYLPAGQSVLLQLPQ	Unmodified	1854.0251	0.025099124	241	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		23.007	23.007	2	4.307E-71	19396	DP1145_14	210.35	128.32			42885000	1929	241	1801	3235	4781;4782	4781		2	9606
NIVEAAAVR	Unmodified	941.52943	0.52942943	376	Q5JNZ5;P62854	RPS26P11;RPS26	Putative 40S ribosomal protein S26-like 1;40S ribosomal protein S26	yes	no	0	0	0	5	0					1	15.638	15.638	2	1.2058E-10	7894	DP1145_15	155.75	74.457			256060000	1930	376	1802	3236	4783	4783		0	9606
NIVQHTTDSSLEEK	Unmodified	1599.774	0.77402939	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	3.33	0.943		1		2		14.701	14.701	2;3	0.0033837	6894	DP1145_14	130.19	87.76			83517000	1931	698	1803	3237;3238;3239	4784;4785;4786	4786		1	9606
NIYAFMGTPVQK	Unmodified	1367.6908	0.69075746	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			19.18	19.18	2	0.0032851	14950	DP1145_12	130.98	91.109			23853000	1932	278	1804	3240;3241	4787;4788	4787		2	9606
NIYAFMGTPVQK	Oxidation (M)	1383.6857	0.68567208	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				17.576	17.576	2	3.9339E-05	12427	DP1145_12	141.91	115.12			144100000	1933	278	1804	3242	4789	4789	218	0	9606
NIYLHDIWPSREEVHR	Unmodified	2063.0337	0.03370675	291	P48200	IREB2	Iron-responsive element-binding protein 2	yes	yes	0	0	1	5	0					1	20.206	20.206	3	0.0065739	15310	DP1145_15	68.262	30.001			40105000	1934	291	1805	3243	4790	4790		1	9606
NKFPGDSVVTGR	Unmodified	1275.6571	0.65714914	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	1.1	1		2	2		15.452	15.452	2;3	1.789E-23	8155	DP1145_14	142.76	95.204			1092100000	1935	124	1806	3244;3245;3246;3247;3248	4791;4792;4793;4794;4795;4796;4797	4795		7	9606
NKLDHYAIIK	Unmodified	1213.6819	0.68190733	368	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	15.168	15.168	3	0.009242	7143	DP1145_15	86.882	26.484			98392000	1936	368	1807	3249	4798	4798		1	9606
NKLNDLEDALQQAK	Unmodified	1598.8264	0.82639932	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3	0			1			18.779	18.779	2	1.5576999999999998E-102	13876	DP1145_13	231.17	164.98		+	60049000	1937	13	1808	3250	4799	4799		1	9606
NKLNDLEDALQQAKEDLAR	Unmodified	2183.1182	0.11822424	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	2	2	0.816	1	1	1			20.795	20.795	3	6.7169E-131	15398	DP1145_11	244.27	181.46		+	102360000	1938	13	1809	3251;3252;3253	4800;4801;4802;4803	4800		4	9606
NKNPAPPIDAVEQILPTLVR	Unmodified	2184.2267	0.22665248	311	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	1	3.5	0.5			1	1		21.574	21.574	3	8.9072E-12	17817	DP1145_13	161.31	146.1			45777000	1939	311	1810	3254;3255	4804;4805;4806	4805		3	9606
NKPGPYSSVPPPSAPPPKK	Unmodified	1944.0469	0.046897198	485	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	2	2	0		1				13.967	13.967	4	0.0079175	7044	DP1145_12	98.227	67.895			16671000	1940	485	1811	3256	4807	4807		1	9606
NKPQVPVPGSDISETQVER	Unmodified	2079.0596	0.059646729	618	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	1	4	0				1		16.488	16.488	3	0.0010483	9705	DP1145_14	131.37	73.208			42594000	1941	618	1812	3257	4808;4809	4808		2	9606
NLAMGVNLTSMSK	2 Oxidation (M)	1396.669	0.66903574	167	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	2	0	4	0				1		16.395	16.395	2	0.021241	9412	DP1145_14	65.695	33.824			28469000	1942	167	1813	3258	4810	4810	151;152	1	9606
NLDIERPTYTNLNR	Unmodified	1717.8747	0.87474649	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	1	2.83	1.07	1	1	2	2		17.136	17.136	2;3	0.00044377	11788	DP1145_12	131.79	68.502			2743200000	1943	393;547;662	1814	3259;3260;3261;3262;3263;3264	4811;4812;4813;4814;4815;4816;4817;4818;4819	4812		9	9606
NLDLDSIIAEVK	Unmodified	1328.7187	0.71874635	21;6	P35908;CON__P35908v2;CON__P35908;O95678;CON__O95678;CON__Q5XKE5;CON__Q8VED5;Q5XKE5;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;P04259;CON__P13647;P13647	KRT2;KRT75;KRT79;KRT6C;KRT6A;KRT6B;KRT5	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5	no	no	0	0	0	2.5	1.12	1	1	1	1		22.045	22.045	2	0.00015902	17080	DP1145_11	154.24	103.17		+	258970000	1944	21;6	1815	3265;3266;3267;3268	4820;4821;4822;4823;4824;4825	4820		6	9606
NLETSSAFQSSSQK	Unmodified	1512.7056	0.70561548	775	Q9Y2X9	ZNF281	Zinc finger protein 281	yes	yes	0	0	0	3	0			1			15.616	15.616	2	0.008976	8734	DP1145_13	161.94	119.61			0	1945	775	1816	3269	4826	4826		1	9606
NLGIPIITVLGDSK	Unmodified	1438.8395	0.83953018	466	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	2	0		1				21.859	21.859	2	0.0052777	18965	DP1145_12	91.313	51.691			2258200	1946	466	1817	3270	4827;4828	4827		2	9606
NLLSVAYK	Unmodified	906.51747	0.51746776	357;385;348	P61981;P27348;Q04917;P31946;P31947;P62258;P63104	YWHAG;YWHAQ;YWHAH;YWHAB;SFN;YWHAE;YWHAZ	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein eta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta	no	no	0	0	0	4	0				1		17.759	17.759	2	0.014332	11776	DP1145_14	100.19	16.574			231950000	1947	348;357;385	1818	3271	4829	4829		1	9606
NLLVTMLIDQLCGR	Oxidation (M)	1660.864	0.86404715	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					23.373	23.373	2	0.0043658	18877	DP1145_11	107.06	70.371			5006900	1948	441	1819	3272	4830;4831	4831	322	2	9606
NLPFDFTWK	Unmodified	1166.576	0.57604528	310	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3.5	0.5			1	1		21.724	21.724	2	0.041489	18014	DP1145_13	75.043	38.726			32220000	1949	310	1820	3273;3274	4832;4833	4832		2	9606
NLPLPPPPPPR	Unmodified	1193.6921	0.69207809	347	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			17.281	17.281	2	0.0047052	11500	DP1145_13	98.629	66.695			87539000	1950	347	1821	3275	4834;4835	4834		2	9606
NLQNLLILTAIK	Unmodified	1352.8391	0.83913625	408	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1.5	0.5	1	1				21.995	21.995	2	0.00028164	17076	DP1145_11	104.22	76.017			7368900	1951	408	1822	3276;3277	4836;4837;4838;4839	4836		4	9606
NLQYYDISAK	Unmodified	1213.5979	0.59790293	371	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	5	0					1	17.444	17.444	2	0.03713	10613	DP1145_15	85.731	45.729			0	1952	371	1823	3278	4840	4840		1	9606
NLSELQDTSLQQLVSQR	Unmodified	1958.0069	0.006882877	522	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	2	0		1				20.466	20.466	2	7.062E-16	17073	DP1145_12	170.95	90.079			5046800	1953	522	1824	3279	4841	4841		1	9606
NLVPGESVYGEK	Unmodified	1290.6456	0.6455814	205	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	4	0				1		16.959	16.959	2	0.021092	10427	DP1145_14	128.03	57.51			115940000	1954	205	1825	3280	4842	4842		0	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	Oxidation (M)	2204.893	0.89299211	207	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4	0				1		16.188	16.188	2	3.5212E-144	9177	DP1145_14	240.34	215.11			32599000	1955	207	1826	3281	4843;4844;4845	4843	169	3	9606
NMQDMVEDYR	2 Oxidation (M)	1331.5122	0.51220074	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	2	0.816	1	1	1			15.138	15.138	2	2.4635E-05	6555	DP1145_11	120.31	106.1		+	113620000	1956	13	1827	3282;3283;3284	4846;4847;4848;4849	4846	6;7	3	9606
NMQDMVEDYR	Oxidation (M)	1315.5173	0.51728612	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	1	0	1					16.227	16.227	2	0.0097304	8217	DP1145_11	107.15	68.851		+	15177000	1957	13	1827	3285	4850	4850	6;7	1	9606
NMSGSLYEMVSR	2 Oxidation (M)	1404.6014	0.6013501	425	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	2	0	3	0			1			16.213	16.213	2	0.0090565	9730	DP1145_13	81.625	51.233			20286000	1958	425	1828	3286	4851	4851	307;308	0	9606
NMVQTAVVPVKK	Oxidation (M)	1328.7486	0.74860669	439	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	1	1	4	0				2		13.998	13.998	2;3	0.0058644	5909	DP1145_14	93.839	64.594			6364000	1959	439	1829	3287;3288	4852;4853	4853	311	1	9606
NNFAVGYR	Unmodified	939.45626	0.45626449	277	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		16.12	16.12	2	6.4493E-05	9024	DP1145_14	128.82	54.377			128910000	1960	277	1830	3289	4854;4855	4854		2	9606
NNISSGHVPHGPLTRPSEQLDYLSR	Unmodified	2773.3896	0.38958849	105	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	3	0			1			17.078	17.078	4	0.032485	11015	DP1145_13	45.011	30.686			43404000	1961	105	1831	3290	4856	4856		0	9606
NNSNDIVNAIMELTM	2 Oxidation (M)	1709.76	0.76003559	29	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	2	0	4	0				1		24.045	24.045	2	0.00060577	20797	DP1145_14	121.61	97.226			3679600	1962	29	1832	3291	4857;4858;4859	4859	24;25	3	9606
NNYRNAHSATTWSGQYVGGAEAR	Unmodified	2509.1483	0.14829559	27	CON__Streptavidin			yes	yes	0	0	1	5	0					2	15.638	15.638	3;4	0.00020307	7896	DP1145_15	101.05	84.433		+	196710000	1963	27	1833	3292;3293	4860;4861;4862;4863	4862		4	
NPAPPIDAVEQILPTLVR	Unmodified	1942.0888	0.088762013	311	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			23.015	23.015	2	0.0032268	19981	DP1145_13	116.84	95.537			6848400	1964	311	1834	3294	4864;4865	4865		2	9606
NPDDITNEEYGEFYK	Unmodified	1832.7741	0.77408897	138	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2.5	0.5		1	1			18.903	18.903	2	4.3195E-16	13910	DP1145_13	173.76	146.27			26719000	1965	138	1835	3295;3296	4866;4867	4867		2	9606
NPDLCDFTIDHQSCSR	Unmodified	1963.8153	0.81525906	439	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		17.659	17.659	3	0.0039441	11522	DP1145_14	106.76	95.652			42081000	1966	439	1836	3297	4868	4868		1	9606
NPLFCGAENTSLWELKK	Unmodified	2005.9931	0.99314707	417	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				19.595	19.595	3	0.0037625	15600	DP1145_12	110.32	82.151			0	1967	417	1837	3298	4869	4869		1	9606
NPPPPINFQEWDGLVR	Unmodified	1877.9424	0.94243213	762	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	4	0				1		21.496	21.496	2	5.073E-06	17242	DP1145_14	151.55	85.92			0	1968	762	1838	3299	4870	4870		1	9606
NQDEQEIPFR	Unmodified	1274.5891	0.58912916	539	Q6PK04	CCDC137	Coiled-coil domain-containing protein 137	yes	yes	0	0	0	4	0				1		17.105	17.105	2	0.0096253	10662	DP1145_14	103.55	65.254			0	1969	539	1839	3300	4871	4871		1	9606
NQDLAPNSAEQASILSLVTK	Unmodified	2098.0906	0.090612506	436	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		21.055	21.055	2	4.9244E-07	16655	DP1145_14	167.37	122.83			66968000	1970	436	1840	3301	4872;4873	4872		2	9606
NQIALWDQLLEGR	Unmodified	1554.8154	0.8154407	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	3.5	0.5			1	1		22.279	22.279	2	0.00047929	18888	DP1145_13	113.22	58.965			185910000	1971	734	1841	3302;3303	4874;4875;4876;4877	4874		4	9606
NQKPSQVNGAPGSPTEPAGQK	Unmodified	2091.0345	0.034494611	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	3	0.816		1	1	1		13.544	13.544	3	0.0049565	5799	DP1145_13	78.554	27.524			1064700	1972	663	1842	3304;3305;3306	4878;4879;4880	4879		3	9606
NQLTAMSSVLAK	Oxidation (M)	1277.6649	0.66493664	469	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	1	0	2	0		1				16.073	16.073	2	0.00081007	10047	DP1145_12	112.13	72.583			17784000	1973	469	1843	3307	4881	4881	359	1	9606
NQLVSVVEESVCNLLNTEVQPCK	Unmodified	2658.2993	0.29930143	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	3	0			1			24.451	24.451	3	0.006537	21929	DP1145_13	63.606	42.869			2343700	1974	534	1844	3308	4882;4883	4882		2	9606
NQTAEKEEFEHQQKELEK	Unmodified	2244.0659	0.065854319	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	2	3	0			1			14.54	14.54	4	0.0099308	7082	DP1145_13	115.56	73.942			73729000	1975	161	1845	3309	4884	4884		1	9606
NQVALNPQNTVFDAK	Unmodified	1657.8424	0.84238373	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	2	1				1	18.076	18.076	2	1.2157E-09	11347	DP1145_11	159.44	120.73			65258000	1976	156	1846	3310;3311	4885;4886	4885		2	9606
NQVAMNPTNTVFDAK	Oxidation (M)	1664.7828	0.78281994	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3.5	0.5			1	1		16.768	16.768	2	2.6287E-55	10634	DP1145_13	208.74	168.25			350860000	1977	161	1847	3312;3313	4887;4888;4889	4888	134	3	9606
NQVAMNPTNTVFDAK	Unmodified	1648.7879	0.78790532	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			17.893	17.893	2	0.015713	12374	DP1145_13	136.7	105.41			0	1978	161	1847	3314	4890	4890		1	9606
NRPPFGQGYTQPGPGYR	Unmodified	1890.9125	0.91252898	609	Q92734	TFG	Protein TFG	yes	yes	0	0	1	3	0			1			16.294	16.294	3	0.0020044	9881	DP1145_13	100.45	77.979			59742000	1979	609	1848	3315	4891	4891		1	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	2 Oxidation (M)	3117.3366	0.33655115	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2	1	1		1			18.289	18.289	3	8.0157E-07	11607	DP1145_11	85.525	72.067			86945000	1980	647	1849	3316;3317	4892;4893	4892	479;480;481	2	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	Oxidation (M)	3101.3416	0.34163653	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	1	1		1			18.802	18.802	3	3.7555E-15	14032	DP1145_13	147.69	130.35			74626000	1981	647	1849	3318;3319	4894;4895;4896;4897	4897	479;480;481	4	9606
NSPLTVPMFLSLFSR	Unmodified	1707.9018	0.90181287	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	3	0			1			24.252	24.252	2	0.0051153	21695	DP1145_13	93.766	51.43			2668000	1982	663	1850	3320	4898;4899	4898		2	9606
NSSPGEASLLEK	Unmodified	1230.6092	0.6091959	548	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	2	0		1				16.045	16.045	2	0.0071241	9969	DP1145_12	113.67	75.859			0	1983	548	1851	3321	4900	4900		1	9606
NSSYFVEWIPNNVK	Unmodified	1695.8257	0.82567103	394;137;464;113;454;669	P04350;P07437;P68371;Q13885;Q9BVA1;Q13509;Q9BUF5	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	0	0	4	0.707			1	2	1	20.775	20.775	2	0	16682	DP1145_13	386.98	283.73			1701999999.9999998	1984	113;137;394;464;454;669	1852	3322;3323;3324;3325	4901;4902;4903;4904;4905	4901		5	9606
NSVQTPVENSTNSQHQVK	Unmodified	1995.961	0.96099532	751	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	3	1		1		1		13.649	13.649	3	0.0015999	5502	DP1145_14	114.56	71.519			1349700	1985	751	1853	3326;3327	4906;4907	4907		2	9606
NSVSNFLHSLER	Unmodified	1401.7001	0.70007659	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					19.643	19.643	2;3	1.3725E-84	13651	DP1145_11	223.87	182.79			373250000	1986	441	1854	3328;3329	4908;4909;4910	4909		3	9606
NSVTPDMMEEMYKK	2 Oxidation (M)	1733.731	0.73104365	283	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	1	4	0				2		15.164	15.164	3	0.027322	7147	DP1145_14	58.595	32.236			41277000	1987	283	1855	3330;3331	4911;4912	4912	225;226;227	1	9606
NTDVAQSPEAPKQEAPAK	Unmodified	1879.9276	0.92756992	742	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	1	2	0		1				13.767	13.767	3	0.0011506	6707	DP1145_12	105	65.931			1305000	1988	742	1856	3332	4913	4913		1	9606
NTGIICTIGPASR	Unmodified	1358.6976	0.69763375	176	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			1			17.298	17.298	2	6.319E-08	11471	DP1145_13	155.33	83.091			28265000	1989	176	1857	3333	4914	4914		1	9606
NTGVILANDANAER	Unmodified	1456.727	0.72701962	280	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.179	16.179	2	2.258E-123	10152	DP1145_12	241.39	182.95			25737000	1990	280	1858	3334	4915;4916	4915		2	9606
NTNVEDVLNAR	Unmodified	1243.6157	0.61567826	638	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	4	0				1		17.525	17.525	2	0.016405	11341	DP1145_14	95.775	59.393			0	1991	638	1859	3335	4917	4917		1	9606
NVDMLSELVQEYDEPILK	Unmodified	2134.0504	0.050387176	657	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			23.58	23.58	2	1.3193E-10	20707	DP1145_13	194.85	152.61			5053900	1992	657	1860	3336	4918	4918		1	9606
NVEELKEDLR	Unmodified	1243.6408	0.64083038	562	Q86UK0	ABCA12	ATP-binding cassette sub-family A member 12	yes	yes	0	0	1	3	0			1			15.834	15.834	2	0.0016113	9083	DP1145_13	117.81	47.286			0	1993	562	1861	3337	4919	4919		1	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	Unmodified	3141.4195	0.41950423	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	3	0.816		2	2	2		12.871	12.871	4;5	1.7933E-13	4610	DP1145_14	138.42	94.257			310120000	1994	278	1862	3338;3339;3340;3341;3342;3343	4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931	4929		12	9606
NVQDAIADAEQR	Unmodified	1328.6321	0.6320566	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.33	1.25	1	1		1		17.365	17.365	2	0.00010122	12194	DP1145_12	134.57	97.501		+	56585000	1995	21	1863	3344;3345;3346	4932;4933;4934	4933		3	9606
NVQDAIADAEQRGEHALK	Unmodified	1963.9712	0.97116607	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	2	0		1				18.436	18.436	3	0.030875	13843	DP1145_12	108.14	81.105		+	13152000	1996	21	1864	3347	4935	4935		0	9606
NVQLQENEIR	Unmodified	1241.6364	0.6364137	252	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3	1.22	1		1	2		15.893	15.893	2	2.2112E-24	8836	DP1145_14	189.7	141.14			152830000	1997	252	1865	3348;3349;3350;3351	4936;4937;4938;4939	4938		4	9606
NVQLTENEIR	Unmodified	1214.6255	0.62551466	350	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		16.204	16.204	2	0.0068108	9371	DP1145_14	99.815	67.495			97919000	1998	350	1866	3352	4940	4940		1	9606
NVRDGIKGR	Unmodified	1013.573	0.57302558	22	CON__Q0VCM5			yes	yes	0	0	2	2	0		1				17.571	17.571	2	0.00042448	12432	DP1145_12	117.4	56.717		+	0	1999	22	1867	3353	4941	4941		1	
NVSQESLETKEEKPEETPK	Unmodified	2201.0699	0.069936644	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	2	3	0			1			14.308	14.308	3	0.010008	6787	DP1145_13	110.56	85.771			0	2000	529	1868	3354	4942	4942		1	9606
NVSTGDVNVEMNAAPGVDLTQLLNNMR	2 Oxidation (M)	2903.3753	0.37531992	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	2	0	1.5	0.5	1	1				21.087	21.087	2;3	5.8678E-07	17873	DP1145_12	88.433	66.033		+	30833000	2001	18	1869	3355;3356	4943;4944;4945	4944	13;14	2	9606
NVTLPAVFK	Unmodified	987.57532	0.57531699	251	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			2			18.979	18.979	1;2	0.0068478	13857	DP1145_13	104.44	40.872			146960000	2002	251	1870	3357;3358	4946;4947	4947		1	9606
NVVHQLSVTLEDLYNGATR	Unmodified	2128.0913	0.091281208	234	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	3	0			1			22.33	22.33	3	0.0075941	18884	DP1145_13	63.578	45.715			4396800	2003	234	1871	3359	4948	4948		1	9606
NYLEPGKECVQPATK	Unmodified	1732.8454	0.8454202	185	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	1	1	0	1					15.291	15.291	3	0.037484	6862	DP1145_11	80.746	43.498			18747000	2004	185	1872	3360	4949	4949		0	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	Unmodified	3256.3889	0.38893238	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		14.486	14.486	3	2.6754E-08	6734	DP1145_14	102.46	86.688			46296000	2005	390	1873	3361	4950;4951;4952	4950		3	9606
NYSPYYNTIDDLKDQIVDLTVGNNK	Unmodified	2901.4032	0.40323245	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	2	1	1		1			22.714	22.714	3	3.3107E-24	18045	DP1145_11	165.9	150.57		+	20347000	2006	20	1874	3362;3363	4953;4954;4955;4956;4957	4954		5	9606
PAASSPETPSAGQQEAK	Unmodified	1654.7798	0.77984305	718	Q9NQS7	INCENP	Inner centromere protein	yes	yes	0	0	0	2.5	0.5		1	1			13.716	13.716	2	7.7138E-10	6694	DP1145_12	157.03	106.57			1164200	2007	718	1875	3364;3365	4958;4959	4958		2	9606
PAPAVGEAEDKENQQATSGPNQPSVR	Unmodified	2676.2739	0.27394961	186	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3	0			1			15.138	15.138	3	0.00028774	8171	DP1145_13	80.683	59.114			40837000	2008	186	1876	3366	4960	4960		1	9606
PASTIARPNMALGK	Oxidation (M)	1441.7711	0.77113304	509	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	1	4	0				1		14.286	14.286	3	0.03931	6373	DP1145_14	55.258	25.453			28214000	2009	509	1877	3367	4961	4961	389	1	9606
PDFVGFEIPDK	Unmodified	1262.6183	0.61830402	108	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	5	0					1	16.286	16.286	2	0.0030522	8902	DP1145_15	101.43	27.766			136400000	2010	108	1878	3368	4962	4962		1	9606
PGASLPPLDLQALEK	Unmodified	1547.8559	0.85590853	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		20.455	20.455	2;3	1.3279E-09	15796	DP1145_14	158.86	116.46			321200000	2011	164	1879	3369;3370;3371;3372;3373	4963;4964;4965;4966;4967;4968;4969;4970;4971	4970		9	9606
PGETEEPRPPEQQDQEGGEAAK	Unmodified	2378.0622	0.062225504	632	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3.5	0.5			1	1		14.262	14.262	3	1.8848999999999998E-50	6375	DP1145_14	195.48	166.3			92553000	2012	632	1880	3374;3375	4972;4973;4974;4975;4976;4977;4978	4977		7	9606
PGGGPGLSTPGGHPKPPHR	Unmodified	1801.9336	0.93359877	209	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	2	0		1				13.661	13.661	4	0.036724	6445	DP1145_12	57.973	34.835			1955400	2013	209	1881	3376	4979	4979		1	9606
PGPGLSSQTAGAAGWR	Unmodified	1511.7481	0.74808942	254	P38432	COIL	Coilin	yes	yes	0	0	0	3	0			1			17.078	17.078	2	4.639800000000001E-71	11133	DP1145_13	215.04	170.66			19884000	2014	254	1882	3377	4980	4980		1	9606
PGTMMPEAFLQEAQIMKK	2 Oxidation (M)	2080.9996	0.99955435	140	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	2	1	1	0	1					20.295	20.295	2	0.020404	14554	DP1145_11	63.864	36.534			79219000	2015	140	1883	3378	4981	4981	110;111	1	9606
PIKPSPPYFGLLLASVGR	Unmodified	1911.0982	0.098204487	192	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	2	1	1		1			21.59	21.59	3	0.0015195	17876	DP1145_13	129.89	119.39			45553000	2016	192	1884	3379;3380	4982;4983;4984	4983		3	9606
PIRIDDYEEEPILK	Unmodified	1728.8934	0.89341625	545	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	1	2	1	1		1			19.562	19.562	2	0.012146	13465	DP1145_11	101.97	42.709			460840000	2017	545	1885	3381;3382	4985;4986	4985		2	9606
PLLGLILLNEK	Unmodified	1221.7697	0.76965971	695	Q9UIA9;Q9H2T7	XPO7;RANBP17	Exportin-7;Ran-binding protein 17	yes	no	0	0	0	2	0		1				22.186	22.186	2	0.0086732	19440	DP1145_12	93.111	78.904			3078100	2018	695	1886	3383	4987	4987		1	9606
PLNPFTAK	Unmodified	886.49125	0.49125301	777	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		17.16	17.16	2	0.0028577	10814	DP1145_14	116.88	43.268			30459000	2019	777	1887	3384	4988	4988		1	9606
PLVLPSPLVTPGSNSQER	Unmodified	1890.0211	0.021076378	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2.33	0.471		2	1			19.727	19.727	2;3	2.9298E-74	15167	DP1145_13	214.61	156.02			229800000	2020	644	1888	3385;3386;3387	4989;4990;4991;4992;4993	4991		5	9606
PSLGSGQLLLVCHASGFYPK	Unmodified	2130.0932	0.093195464	226	P29017	CD1C	T-cell surface glycoprotein CD1c	yes	yes	0	0	0	5	0					1	21.696	21.696	2	0.015159	16764	DP1145_15	84.297	34.964			0	2021	226	1889	3388	4994	4994		1	9606
PVIVEPLEQLDDEDGLPEK	Unmodified	2134.0681	0.06814573	209	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	2	0		1				20.651	20.651	2	0.0026336	17429	DP1145_12	116.84	68.561			8683900	2022	209	1890	3389	4995	4995		1	9606
PVLNFYEANFPANVMDVIAR	Oxidation (M)	2295.1358	0.13578856	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	3	0			2			22.176	22.176	2;3	7.4429E-18	18801	DP1145_13	174.24	136.89			45036000	2023	193	1891	3390;3391	4996;4997	4996	162	2	9606
PVLNFYEANFPANVMDVIAR	Unmodified	2279.1409	0.14087394	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			2			23.648	23.648	2;3	1.597E-05	20904	DP1145_13	184.21	149.69			3330500	2024	193	1891	3392;3393	4998;4999;5000;5001;5002	5002		5	9606
PVSSAASVYAGAGGSGSR	Unmodified	1579.759	0.75904803	129	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	3	0			1			15.642	15.642	2	0.0027353	8936	DP1145_13	107.65	79.069			249320000	2025	129	1892	3394	5003	5003		1	9606
PYQYPALTPEQK	Unmodified	1433.7191	0.7190807	112	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	4	0				1		17.4	17.4	2	0.007999	11139	DP1145_14	117.02	77.174			0	2026	112	1893	3395	5004	5004		1	9606
QAASSLQQASLK	Unmodified	1230.6568	0.65681479	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			14.998	14.998	2	0.039765	7843	DP1145_13	87.184	42.162			12382000	2027	255	1894	3396	5005	5005		0	9606
QADVFPDRDHFGR	Unmodified	1558.7277	0.72768832	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			16.026	16.026	2;3	6.2214E-54	9382	DP1145_13	205.59	150.5			2186500000	2028	710	1895	3397;3398	5006;5007;5008;5009	5006		3	9606
QAGAEALSQAVAR	Unmodified	1270.663	0.6629628	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					16.302	16.302	2	0.0054028	8375	DP1145_11	91.469	66.332			10992000	2029	605	1896	3399	5010	5010		1	9606
QAITQVVVSR	Unmodified	1099.635	0.63495714	708	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		16.076	16.076	2	2.3682E-43	9010	DP1145_14	209.21	156.42			0	2030	708	1897	3400	5011	5011		1	9606
QAQAAVLAVLPR	Unmodified	1235.735	0.73500553	658	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		18.806	18.806	2	0.041307	13268	DP1145_14	94.309	47.418			15548000	2031	658	1898	3401	5012	5012		0	9606
QAQIEVVPSASALIIK	Unmodified	1665.9665	0.96652161	229	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	19.891	19.891	2	0.0033604	14449	DP1145_15	132.03	83.913			83438000	2032	229	1899	3402	5013	5013		1	9606
QASRPPIQNACVADK	Unmodified	1653.8257	0.82568781	626	Q96EU6	RRP36	Ribosomal RNA processing protein 36 homolog	yes	yes	0	0	1	4	0				1		14.085	14.085	3	0.038944	5948	DP1145_14	83.856	52.785			13773000	2033	626	1900	3403	5014	5014		0	9606
QAVDVSPLR	Unmodified	983.53999	0.53999412	287	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	16.095	16.095	2	0.02943	8548	DP1145_15	79.906	42.813			30160000	2034	287	1901	3404	5015	5015		1	9606
QAVDVSPLRR	Unmodified	1139.6411	0.64110515	287	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	1	5	0					1	14.961	14.961	2	0.010348	6821	DP1145_15	109.48	44.767			0	2035	287	1902	3405	5016	5016		1	9606
QAVSELDEEQHLEDEELQPPR	Unmodified	2490.151	0.15104051	718	Q9NQS7	INCENP	Inner centromere protein	yes	yes	0	0	0	2	0		1				18.233	18.233	3	2.7899E-06	13540	DP1145_12	145.69	128.12			3234100	2036	718	1903	3406	5017	5017		1	9606
QAVTNPNNTFYATK	Unmodified	1567.7631	0.76307078	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			16.134	16.134	2	5.6336999999999995E-43	9536	DP1145_13	199.8	160.65			215000000	2037	255	1904	3407	5018;5019	5018		2	9606
QDMLTLQIIRIMENIWQNQGLDLR	Unmodified	2940.5314	0.53136705	268	P42336	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform	yes	yes	0	0	1	3	0			1			33.06	33.06	7	0.042634	30034	DP1145_13	17.503	9.2168			541400	2038	268	1905	3408	5020	5020		0	9606
QEGIIFIGPPPSAIR	Unmodified	1593.8879	0.88787736	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	20.345	20.345	2	2.4042000000000002E-250	16086	DP1145_13	280.17	194.21			668290000	2039	647	1906	3409;3410;3411;3412;3413	5021;5022;5023;5024;5025;5026;5027;5028	5024		8	9606
QEYDESGPSIVHR	Unmodified	1515.6954	0.69538514	335;389	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		15.306	15.306	3	0.0014161	7958	DP1145_14	96.23	72.854			121510000	2040	335;389	1907	3414	5029;5030	5030		2	9606
QEYEQLIAK	Unmodified	1120.5764	0.57643921	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	3	0			1			16.777	16.777	2	3.0408E-07	10580	DP1145_13	136.27	68.045		+	46887000	2041	20	1908	3415	5031	5031		1	9606
QFSQYIK	Unmodified	912.47052	0.47051757	283	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		16.395	16.395	2	1.2779E-07	9632	DP1145_14	135.87	17.931			137560000	2042	283	1909	3416	5032;5033	5033		2	9606
QFSSADEAALKEPIIK	Unmodified	1745.92	0.91996535	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.2	1.33	1		2	1	1	17.448	17.448	2;3	5.4973999999999994E-126	11711	DP1145_13	258.65	178.41			1247500000	2043	710	1910	3417;3418;3419;3420;3421	5034;5035;5036;5037;5038;5039	5035		6	9606
QGDEVSVHYDPMIAK	Oxidation (M)	1703.7825	0.78248559	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.6	1.02	1	1	2	1		16.289	16.289	2;3	1.9111E-14	9845	DP1145_13	166.11	130.4			1197100000	2044	647	1911	3422;3423;3424;3425;3426	5040;5041;5042;5043;5044;5045;5046;5047	5045	482	8	9606
QGLDSFDTGK	Unmodified	1066.4931	0.49310351	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				16.675	16.675	2	0.019803	10948	DP1145_12	85.862	38.204			10993000	2045	472	1912	3427	5048	5048		1	9606
QGNLSSQVPLKR	Unmodified	1325.7415	0.74154747	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					14.762	14.762	3	0.021973	6075	DP1145_11	100.69	59.919			7785700	2046	400	1913	3428	5049	5049		0	9606
QGPLHGMLINTPYVTK	Oxidation (M)	1783.9291	0.92909025	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.167	17.167	3	0.023149	9925	DP1145_11	64.04	38.718			400280000	2047	441	1914	3429	5050;5051	5051	331	2	9606
QGPLHGMLINTPYVTK	Unmodified	1767.9342	0.93417563	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.36	18.36	3	0.00073195	11755	DP1145_11	85.362	29.547			150350000	2048	441	1914	3430	5052	5052		1	9606
QGPQHGMLINTPYVTK	Unmodified	1782.9087	0.90868916	43	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.144	17.144	3	0.029527	9728	DP1145_11	54.859	13.481			0	2049	43	1915	3431	5053	5053		1	9606
QGQYSPMAIEEQVAVIYAGVR	Oxidation (M)	2324.1471	0.14708153	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			22.275	22.275	2	0.00082543	18959	DP1145_13	131.35	102			9106200	2050	217	1916	3432	5054	5054	174	1	9606
QGTIFLAGPPLVK	Unmodified	1339.7864	0.7863724	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.763	19.763	2	8.1566E-08	15280	DP1145_13	154.84	98.41			1224800000	2051	710	1917	3433;3434;3435;3436	5055;5056;5057;5058;5059;5060;5061;5062	5057		8	9606
QGVDADINGLR	Unmodified	1156.5836	0.58364985	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					16.948	16.948	2	1.7575E-42	9402	DP1145_11	209.19	101.77		+	0	2052	20	1918	3437	5063	5063		1	9606
QIDATFVR	Unmodified	948.50288	0.50288033	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		16.759	16.759	2	6.4951E-08	10034	DP1145_14	142.64	75.642			221770000	2053	499	1919	3438	5064	5064		0	9606
QIFILLFQR	Unmodified	1176.7019	0.70191449	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				22.282	22.282	2	0.0015242	19563	DP1145_12	111.65	55.526			11528000	2054	322	1920	3439	5065;5066	5065		2	9606
QILDPAASVTGSR	Unmodified	1313.6939	0.69392858	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			17.426	17.426	2	8.882E-11	12284	DP1145_12	161.67	112.57			70311000	2055	278	1921	3440;3441	5067;5068	5067		2	9606
QILDSAASLTGSK	Unmodified	1289.6827	0.68269519	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			17.572	17.572	2	0.00054336	11901	DP1145_13	104.07	58.098			441680000	2056	278	1922	3442;3443;3444	5069;5070;5071	5071		2	9606
QIREPVDLQK	Unmodified	1224.6826	0.68263561	766	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	1	2	0		1				14.832	14.832	3	0.041654	8371	DP1145_12	61.593	11.121			1569900	2057	766	1923	3445	5072	5072		1	9606
QISNLQQSISDAEQR	Unmodified	1715.8438	0.84384029	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				18.018	18.018	2	0.0063576	13243	DP1145_12	89.266	56.407		+	330720000	2058	13	1924	3446;3447	5073;5074	5074		2	9606
QITVNDLPVGR	Unmodified	1210.667	0.66698555	420	Q06830;P32119	PRDX1;PRDX2	Peroxiredoxin-1;Peroxiredoxin-2	yes	no	0	0	0	5	0					1	17.892	17.892	2	3.0147E-05	11193	DP1145_15	140.83	92.875			43795000	2059	420	1925	3448	5075	5075		0	9606
QIVGTPVNSEDSDTR	Unmodified	1616.7642	0.76419299	522	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	4	0				1		15.5	15.5	2	3.7937E-15	8225	DP1145_14	167.11	133.92			4610600	2060	522	1926	3449	5076	5076		1	9606
QKADEAYLIGR	Unmodified	1262.6619	0.66190017	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2	0		1				15.871	15.871	2	0.040364	9735	DP1145_12	96.331	63.491			45958000	2061	164	1927	3450	5077	5077		1	9606
QKLDPAASVTGSK	Unmodified	1300.6987	0.69867961	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		2				14.468	14.468	2;3	5.6979E-31	7608	DP1145_12	188.27	101.09			77259000	2062	278	1928	3451;3452	5078;5079	5079		2	9606
QKPQMAPPVSDPENSQGPAAGSSDEPGKR	Oxidation (M)	2977.3836	0.38357642	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	1	2	3	1		1		1		14.376	14.376	4	2.2864E-08	7488	DP1145_12	110.78	91.064			22012000	2063	534	1929	3453;3454	5080;5081;5082	5080	411	3	9606
QKVDSLLENLEK	Unmodified	1414.7668	0.76675917	139	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				2		18.16	18.16	2;3	0.015723	12336	DP1145_14	93.839	41.344			24607000	2064	139	1930	3455;3456	5083;5084	5083		0	9606
QKVEGTEPTTAFNLFVGNLNFNK	Unmodified	2567.302	0.30200227	199	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.5		1	1			21.407	21.407	3	8.8004E-40	18391	DP1145_12	178.1	149.76			38197000	2065	199	1931	3457;3458	5085;5086	5085		2	9606
QLASGLLLVTGPLVLNR	Unmodified	1763.0669	0.066904359	415	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		22.451	22.451	2	4.2963E-58	18616	DP1145_14	209.67	177.68			8663800	2066	415	1932	3459	5087;5088	5087		2	9606
QLAVAEGKPPEAPK	Unmodified	1433.7878	0.78782897	328	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	2	0		1				14.867	14.867	3	0.015538	8244	DP1145_12	68.277	40.724			5106700	2067	328	1933	3460	5089	5089		1	9606
QLDSIVGER	Unmodified	1015.5298	0.52982336	6	CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__P13647;P13647	KRT6C;KRT6A;KRT5	Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5	yes	no	0	0	0	2	1	1		1			16.394	16.394	2	0.0042137	8504	DP1145_11	110.12	45.855		+	49340000	2068	6	1934	3461;3462	5090;5091	5090		2	9606
QLFHPEQLITGK	Unmodified	1409.7667	0.76669959	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.33	0.471			2	1		18.487	18.487	2;3	4.5176E-104	13142	DP1145_13	244.16	0			377310000	2069	393;547;662	1935	3463;3464;3465	5092;5093;5094;5095;5096	5095		5	9606
QLFHPEQLITGKEDAANNYAR	Unmodified	2414.1979	0.19787154	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	1	3	0			3			17.992	17.992	2;3;4	6.3756E-186	12604	DP1145_13	287.31	241.18			608250000	2070	393;547;662	1936	3466;3467;3468	5097;5098;5099;5100;5101;5102;5103;5104	5101		8	9606
QLIVANAGDSR	Unmodified	1142.6044	0.60438529	49	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			1			15.233	15.233	2	0.014231	8507	DP1145_13	86.898	53.636			20283000	2071	49	1937	3469	5105	5105		1	9606
QLLQANPILEAFGNAK	Unmodified	1725.9414	0.94136949	245	P35579;P35749;Q7Z406	MYH9;MYH11;MYH14	Myosin-9;Myosin-11;Myosin-14	yes	no	0	0	0	2.33	1.25	1	1		1		21.754	21.754	2	1.0459E-15	18856	DP1145_12	172.17	127.75			8028600	2072	245	1938	3470;3471;3472	5106;5107;5108;5109;5110	5108		5	9606
QLLQVIQEK	Unmodified	1097.6445	0.64445919	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2.5	0.5		1	1			17.627	17.627	2	3.8867999999999997E-22	11995	DP1145_13	166.52	62.151			70867000	2073	698	1939	3473;3474	5111;5112	5112		1	9606
QLQEERPELSESELTR	Unmodified	1942.9596	0.95959833	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	2	0		1				16.675	16.675	3	0.0268	11163	DP1145_12	65.956	42.475			30606000	2074	189	1940	3475	5113	5113		1	9606
QLSAFGEYVAEILPK	Unmodified	1663.8821	0.88212328	82	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	4	0				1		22.815	22.815	2	0.0052973	19188	DP1145_14	94.402	47.606			2103600	2075	82	1941	3476	5114	5114		1	9606
QLSMEKFLSLTEEDLNKFESLTMGAK	Unmodified	2988.4824	0.48241075	602	Q8WYQ9	ZCCHC14	Zinc finger CCHC domain-containing protein 14	yes	yes	0	0	2	5	0					1	20.429	20.429	3	0.0073591	15049	DP1145_15	65.207	34.282			0	2076	602	1942	3477	5115	5115		1	9606
QLSQSLLPAIVELAEDAK	Unmodified	1924.0517	0.051707805	231	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	3	0			1			23.634	23.634	2	0.0036673	20790	DP1145_13	129.17	84.606			6906800	2077	231	1943	3478	5116	5116		1	9606
QLTANTGHTIHVHYPGNRQPNPPLILQR	Unmodified	3171.6802	0.68023163	558	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	2	0		1				17.075	17.075	6	0.042073	11696	DP1145_12	28.665	11.018			11517000	2078	558	1944	3479	5117	5117		0	9606
QLTEEDGVHSVIEENIK	Unmodified	1938.9535	0.95345032	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					17.956	17.956	2;3	2.9382E-56	11087	DP1145_11	190.34	118.05			253430000	2079	441	1945	3480;3481	5118;5119;5120	5120		3	9606
QLTQTTHTDKVPGDEDKGINVFR	Unmodified	2598.3038	0.30379318	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0.632	1	3	1			16.116	16.116	3;4;5	7.2133E-19	10137	DP1145_12	191.71	157.46			254810000	2080	278	1946	3482;3483;3484;3485;3486	5121;5122;5123;5124;5125;5126;5127;5128;5129	5127		9	9606
QMLDPANYGTGMER	2 Oxidation (M)	1613.6814	0.68139134	278	P46013	MKI67	Antigen KI-67	yes	yes	0	2	0	2	0		1				16.128	16.128	2	0.0007884	10182	DP1145_12	103.43	76.129			28710000	2081	278	1947	3487	5130;5131	5131	219;220	2	9606
QNALLEQQVR	Unmodified	1197.6466	0.64658446	338	P61244	MAX	Protein max	yes	yes	0	0	0	5	0					1	16.056	16.056	2	0.0010924	8507	DP1145_15	110.41	53.492			16840000	2082	338	1948	3488	5132	5132		1	9606
QNIFEFFER	Unmodified	1228.5877	0.58767259	417	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				22.075	22.075	2	0.015659	19317	DP1145_12	90.709	55.271			2022800	2083	417	1949	3489	5133	5133		1	9606
QNLEPLFEQYINNLR	Unmodified	1889.9636	0.9635615	6	CON__P48668;CON__P04259;CON__P02538;P48668;P02538;P04259;CON__P13647;P13647	KRT6C;KRT6A;KRT6B;KRT5	Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 5	yes	no	0	0	0	2.67	1.25	1		1	1		22.764	22.764	2	2.6044999999999998E-174	19526	DP1145_13	268.91	201.79		+	6307200	2084	6	1950	3490;3491;3492	5134;5135;5136;5137	5136		4	9606
QNTGVWLVK	Unmodified	1043.5764	0.57637963	175	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		17.759	17.759	2	0.015929	11808	DP1145_14	90.37	24.904			137440000	2085	175	1951	3493	5138;5139	5138		2	9606
QPGSSSSSAPGQPSTGVAR	Unmodified	1756.834	0.83400389	533	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	2	0		1				14.067	14.067	2	0.024108	7094	DP1145_12	96.371	66.82			2530600	2086	533	1952	3494	5140	5140		1	9606
QPGSSSSSAPGQPSTGVARPTVSSGPVPR	Unmodified	2734.3634	0.36343332	533	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	1	2	0		1				15.571	15.571	3	0.0011345	9310	DP1145_12	53.777	32.576			25651000	2087	533	1953	3495	5141	5141		1	9606
QPLALNVAYR	Unmodified	1143.64	0.64004252	436	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		17.859	17.859	2	0.004178	11989	DP1145_14	130.22	93.664			41108000	2088	436	1954	3496	5142	5142		0	9606
QPPSQFEPLDMK	Unmodified	1415.6755	0.67550132	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			18.279	18.279	2	0.043218	12944	DP1145_13	66.19	38.418			15860000	2089	240	1955	3497	5143	5143		1	9606
QPSDGMERPSSLMDSSQEK	2 Oxidation (M)	2139.9049	0.90486193	530	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	2	1	2	0		1				13.967	13.967	3	0.039964	6885	DP1145_12	51.798	29.746			1668200	2090	530	1956	3498	5144	5144	408;409	1	9606
QPYAVSELAGHQTSAESWGTGR	Unmodified	2331.088	0.087986745	251	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			17.878	17.878	3	0.018175	12535	DP1145_13	58.755	35.559			133370000	2091	251	1957	3499	5145	5145		1	9606
QQASHYLYVR	Unmodified	1263.636	0.63601977	780	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		15.306	15.306	3	0.021316	7785	DP1145_14	101.65	84.929			70555000	2092	780	1958	3500	5146	5146		0	9606
QQGDHSLKEHELLEQQKR	Unmodified	2202.1141	0.11414192	452	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	2	2	0		1				13.967	13.967	5	0.022062	6951	DP1145_12	65.225	32.599			5751700	2093	452	1959	3501	5147	5147		1	9606
QQQEELEAEHGTGDKPAAPR	Unmodified	2190.0301	0.030137515	465	Q13895	BYSL	Bystin	yes	yes	0	0	1	3	0			1			13.938	13.938	4	0.027903	6318	DP1145_13	103.39	77.982			84185000	2094	465	1960	3502	5148;5149	5149		2	9606
QQQQNVEDAMKEMQKPLAR	2 Oxidation (M)	2303.0998	0.099813759	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	2	2	3.8	0.748			2	2	1	13.896	13.896	3;4	0.0032491	5809	DP1145_14	90.259	69.406			206920000	2095	665	1961	3503;3504;3505;3506;3507	5150;5151;5152;5153;5154;5155	5152	494;495	5	9606
QRQEEPPPGPQRPDQSAAAAGPGDPK	Unmodified	2680.2954	0.29535376	661	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	2	5	0					2	14.285	14.285	3;4	0.0020317	5837	DP1145_15	78.352	48.016			47673000	2096	661	1962	3508;3509	5156;5157	5156		2	9606
QSFEVLK	Unmodified	849.45962	0.45961853	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0			1			16.577	16.577	1	5.1686E-13	10255	DP1145_13	147.69	27.072			14970000	2097	480	1963	3510	5158	5158		1	9606
QSLEASLAETEGR	Unmodified	1389.6736	0.67358707	18	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2.5	1.12	1	1	1	1		17.743	17.743	2	3.969E-103	10803	DP1145_11	234.67	178.03		+	321850000	2098	18	1964	3511;3512;3513;3514	5159;5160;5161;5162;5163	5159		3	9606
QSLETICLLLAYK	Unmodified	1550.8378	0.83781563	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3	0			1			21.883	21.883	2	0.0030549	18270	DP1145_13	96.171	50.51			20880000	2099	252;350;351	1965	3515	5164	5164		1	9606
QSNVAAPGDATPPAEK	Unmodified	1551.7529	0.75290002	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	3.5	0.5			1	1		14.563	14.563	2	6.828399999999999E-106	7108	DP1145_13	231.74	174.83			152490000	2100	644	1966	3516;3517	5165;5166;5167;5168	5165		3	9606
QSNVAAPGDATPPAEKK	Unmodified	1679.8479	0.84786304	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	3	0.816		1	1	1		13.498	13.498	3	1.9605999999999998E-23	5866	DP1145_12	164.41	131.71			7731100	2101	644	1967	3518;3519;3520	5169;5170;5171;5172;5173;5174;5175	5169		7	9606
QSVEADINGLRR	Unmodified	1356.711	0.71097563	18	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	no	no	0	0	1	3.67	0.943			2		1	16.433	16.433	2;3	3.8241000000000003E-42	10004	DP1145_13	157.66	124.29		+	178500000	2102	18	1968	3521;3522;3523	5176;5177;5178	5176		2	9606
QTALVELLK	Unmodified	1013.6121	0.61209643	12	CON__P02769			yes	yes	0	0	0	3	0			1			19.18	19.18	2	0.015745	14404	DP1145_13	90.601	32.79		+	131500000	2103	12	1969	3524	5179	5179		1	9606
QTEAVLNALLPTLR	Unmodified	1537.8828	0.88279198	594	Q8NI77	KIF18A	Kinesin-like protein KIF18A	yes	yes	0	0	0	2	0		1				21.404	21.404	2	2.2721E-15	18341	DP1145_12	167.2	132.43			2303900	2104	594	1970	3525	5180;5181	5181		2	9606
QTFEAAILTQLHPR	Unmodified	1623.8733	0.87328993	716	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	4	0				1		19.876	19.876	3	0.0058762	15077	DP1145_14	78.985	59.49			24767000	2105	716	1971	3526	5182	5182		1	9606
QTLEMNLTNLVK	Oxidation (M)	1418.7439	0.74391524	755	Q9UJV3	MID2	Probable E3 ubiquitin-protein ligase MID2	yes	yes	0	1	0	3.5	0.5			1	1		19.07	19.07	3	0.030281	14360	DP1145_13	57.567	10.838			206230000	2106	755	1972	3527;3528	5183;5184	5183	536	2	9606
QTMAEVFEK	Oxidation (M)	1097.5063	0.50631073	748	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	1	0	5	0					1	20.128	20.128	1	0.041195	14547	DP1145_15	45.335	21.133			5895900	2107	748	1973	3529	5185	5185	534	0	9606
QTQIFTTYSDNQPGVLIQVYEGER	Unmodified	2785.3559	0.35588833	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			2			21.378	21.378	2;3	0.0077149	17691	DP1145_13	82.837	53.199			41777000	2108	156	1974	3530;3531	5186;5187	5186		1	9606
QTQTFTTYSDNQPGVLIQVYEGER	Unmodified	2773.3195	0.31950282	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			20.683	20.683	2;3	3.2948E-06	16704	DP1145_13	174.35	143.61			60275000	2109	161	1975	3532;3533	5188;5189;5190	5189		3	9606
QVGYENAGTVEFLVDR	Unmodified	1795.8741	0.87407779	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			19.965	19.965	2	2.3451E-15	14099	DP1145_11	206.74	163.94			358650000	2110	164	1976	3534;3535;3536	5191;5192;5193;5194	5192		4	9606
QVIPGLEQSLLDMCVGEK	Unmodified	2015.0067	0.0067482219	736	Q9NYL4	FKBP11	Peptidyl-prolyl cis-trans isomerase FKBP11	yes	yes	0	0	0	5	0					1	23.737	23.737	2	0.013569	19793	DP1145_15	89.266	43.375			44523000	2111	736	1977	3537	5195	5195		1	9606
QVIPGLEQSLLDMCVGEKR	Oxidation (M)	2187.1028	0.10277387	736	Q9NYL4	FKBP11	Peptidyl-prolyl cis-trans isomerase FKBP11	yes	yes	0	1	1	1	0	1					19.736	19.736	3	0.028576	13960	DP1145_11	66.738	28.597			15826000	2112	736	1978	3538	5196	5196	530	1	9606
QVLDNLTMEK	Oxidation (M)	1205.5962	0.59618837	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	1	1		1			16.675	16.675	2	4.4127E-05	8903	DP1145_11	122.33	88.143		+	352140000	2113	20	1979	3539;3540	5197;5198	5197	17	2	9606
QVLIASHLPSYELR	Unmodified	1624.8937	0.89369102	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.36	18.36	2;3	4.6709E-10	11806	DP1145_11	160.72	81.574			939950000	2114	441	1980	3541;3542	5199;5200;5201;5202;5203;5204	5203		6	9606
QVPNESFFNFFNPLK	Unmodified	1826.8992	0.89917033	657	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3.5	0.5			1	1		23.237	23.237	2	2.215E-22	19764	DP1145_14	175.49	128.65			23262000	2115	657	1981	3543;3544	5205;5206;5207;5208	5207		4	9606
QVQAEVPGSPIFVMR	Oxidation (M)	1672.8607	0.86067633	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.66	18.66	2	0.0069218	12203	DP1145_11	128.08	75.356			258290000	2116	441	1982	3545	5209	5209	332	1	9606
QVQAEVPGSPIFVMR	Unmodified	1656.8658	0.86576171	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.023	21.023	2	6.84E-70	13909	DP1145_11	215.08	121.52			272310000	2117	441	1982	3546;3547	5210;5211;5212	5210		3	9606
QVQSLMVHQRK	Oxidation (M)	1368.7296	0.72960258	616	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	1	1	2	0		1				15.871	15.871	2	0.021515	9796	DP1145_12	80.165	23.355			38293000	2118	616	1983	3548	5213	5213	452	1	9606
QVVNIPSFIVR	Unmodified	1270.7398	0.73975656	286	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	20.173	20.173	2	6.1166E-44	14734	DP1145_15	199.89	146.12			139920000	2119	286	1984	3549	5214	5214		1	9606
QVVQGLLSETYLEAHR	Unmodified	1841.9636	0.9635615	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			18.979	18.979	3	7.3902E-42	13955	DP1145_13	195.94	158.03			36687000	2120	240	1985	3550	5215	5215		0	9606
QWGWTQGR	Unmodified	1017.4781	0.47806257	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	17.703	17.703	2	0.015967	11004	DP1145_15	104.21	34.581			0	2121	198	1986	3551	5216	5216		1	9606
QYTSPEEIDAQLQAEK	Unmodified	1848.8741	0.87413737	453	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	4	0				1		18.36	18.36	2	0.003083	12825	DP1145_14	114.24	98.653			39098000	2122	453	1987	3552	5217	5217		1	9606
RAFVHWYVGEGMEEGEFSEAR	Oxidation (M)	2501.107	0.10700763	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	1	3	0			1			18.279	18.279	3	0.015768	12950	DP1145_13	67.668	52.724			22590000	2123	393;547;662	1988	3553	5218	5218	288	1	9606
RAPFDLFENK	Unmodified	1235.6299	0.62987176	143	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	3	0			1			18.579	18.579	2	0.0059286	13475	DP1145_13	107.21	18.386			52467000	2124	143	1989	3554	5219	5219		1	9606
RAPFDLFENKK	Unmodified	1363.7248	0.72483478	143	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	2	3	0			1			17.004	17.004	3	0.028607	10908	DP1145_13	102.4	40.442			23966000	2125	143	1990	3555	5220	5220		0	9606
RAPFDLFENR	Unmodified	1263.636	0.63601977	138	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	3	0			1			18.811	18.811	2	0.00018191	13920	DP1145_13	120.45	50.396			27692000	2126	138	1991	3556	5221;5222	5222		2	9606
RATLGPTPTTPPQPPDPSQPPPGPMQH	Oxidation (M)	2814.3759	0.37591226	75	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	1	5	0					1	16.791	16.791	3	4.5407E-06	9667	DP1145_15	81.525	62.645			61095000	2127	75	1992	3557	5223	5223	53	1	9606
RATTGTQTLLSSGTR	Unmodified	1548.822	0.82198264	571	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	1	2	0		1				14.767	14.767	3	0.006754	8052	DP1145_12	80.411	29.159			5016400	2128	571	1993	3558	5224	5224		1	9606
RAYIAYELNSVQHR	Unmodified	1718.8853	0.8852516	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.391	16.391	3	4.7953999999999996E-32	8490	DP1145_11	188.63	132.21			302180000	2129	441	1994	3559	5225;5226;5227	5226		3	9606
RDPALNSGVSQKPDPAK	Unmodified	1778.9275	0.92751034	163	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	2	3	0			1			13.312	13.312	3	0.041031	5329	DP1145_13	115.2	90.922			565350	2130	163	1995	3560	5228	5228		1	9606
RDSALQQLR	Unmodified	1085.5942	0.59415496	536	Q6P2H3	CEP85	Centrosomal protein of 85 kDa	yes	yes	0	0	1	5	0					1	17.393	17.393	2	0.0019477	10483	DP1145_15	116.73	57.911			26990000	2131	536	1996	3561	5229	5229		1	9606
RFDDAVVQSDMK	Oxidation (M)	1425.6558	0.65582851	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			14.938	14.938	2	7.4842E-08	7673	DP1145_13	149.94	88.6			113980000	2132	161	1997	3562	5230	5230	135	1	9606
RFDDAVVQSDMK	Unmodified	1409.6609	0.66091389	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			2			16.099	16.099	2;3	0.0002235	9516	DP1145_13	191.33	122.96			70719000	2133	161	1997	3563;3564	5231;5232;5233	5233		3	9606
RFQAQSLGTTYIYDIPEMFR	Oxidation (M)	2451.1893	0.18928069	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					20.561	20.561	3	0.0050533	15106	DP1145_11	91.589	65.594			16871000	2134	441	1998	3565	5234;5235	5235	318	2	9606
RHPEYAVSVLLR	Unmodified	1438.8045	0.80448208	12	CON__P02769			yes	yes	0	0	1	2.5	1.12	1	1	1	1		17.266	17.266	3	1.0447E-08	9940	DP1145_11	137.62	104.43		+	512850000	2135	12	1999	3566;3567;3568;3569	5236;5237;5238;5239;5240	5236		5	9606
RHPYFYAPELLYYANK	Unmodified	2044.0207	0.020682448	12	CON__P02769			yes	yes	0	0	1	2	1	1		1			19.645	19.645	3	0.0010136	15002	DP1145_13	110.84	68.026		+	84627000	2136	12	2000	3570;3571	5241;5242	5242		2	9606
RIGYPVMIK	Oxidation (M)	1091.6161	0.61613595	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2	1	1		1			15.717	15.717	2	0.014502	8933	DP1145_13	92.47	35.749			371970000	2137	647	2001	3572;3573	5243;5244	5244	483	1	9606
RIGYPVMIK	Unmodified	1075.6212	0.62122133	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	4	0				1		16.558	16.558	2	0.0046771	9736	DP1145_14	110.81	45.135			53687000	2138	647	2001	3574	5245	5245		1	9606
RIPVQAVWAGWGHASENPK	Unmodified	2102.081	0.080991294	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	1	1	0	2					18.242	18.242	3;4	1.6226E-17	11510	DP1145_11	210.98	129.34			616190000	2139	441;43	2002	3575;3576	5246;5247;5248;5249	5247		4	9606
RISEQFTAMFR	Oxidation (M)	1400.6871	0.68706906	394;137;464;113;454	P04350;P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	1	1	3	0			1			17.078	17.078	3	0.012068	10992	DP1145_13	83.045	49.816			37319000	2140	113;137;394;464;454	2003	3577	5250	5250	69	0	9606
RLFEGNALLR	Unmodified	1187.6775	0.67749065	286	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	5	0					1	17.493	17.493	2	0.024269	10792	DP1145_15	117.01	33.261			43453000	2141	286	2004	3578	5251	5251		0	9606
RLGLPGDEVDNKVK	Unmodified	1538.8417	0.84165545	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	2	1	0	1					15.361	15.361	3	0.011979	6928	DP1145_11	69.258	26.629			0	2142	400	2005	3579	5252	5252		1	9606
RLLLEDLVK	Unmodified	1097.6808	0.6808447	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	4	0				1		19.06	19.06	2	0.042821	13761	DP1145_14	90.657	41.239			57695000	2143	441	2006	3580	5253	5253		1	9606
RLTFLVAQK	Unmodified	1074.655	0.6549643	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.667	16.667	2	0.035301	9105	DP1145_11	94.114	33.355			260800000	2144	441	2007	3581	5254	5254		1	9606
RNLDIERPTYTNLNR	Unmodified	1873.9759	0.97585752	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	2	3	0			1			16.076	16.076	4	0.010662	9501	DP1145_13	98	66.124			111330000	2145	393;547;662	2008	3582	5255	5255		0	9606
RNPDTQWITKPVHK	Unmodified	1718.9216	0.92163711	343	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	2	4	0				1		14.687	14.687	4	0.0010041	6948	DP1145_14	145.81	111.63			44384000	2146	343	2009	3583	5256	5256		0	9606
RPAEDMEEEQAFKR	Oxidation (M)	1750.7944	0.79444726	347	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3	0			1			14.038	14.038	3	0.0089162	6447	DP1145_13	109.07	78.966			29623000	2147	347	2010	3584	5257	5257	258	0	9606
RPCFSALTPDETYVPK	Unmodified	1879.9138	0.91383411	12	CON__P02769			yes	yes	0	0	1	3	0			1			17.978	17.978	3	0.0013736	12485	DP1145_13	105.63	69.033		+	236440000	2148	12	2011	3585	5258	5258		1	9606
RPELLTHSTTEVTQPR	Unmodified	1863.9803	0.9802742	398	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		2				15.134	15.134	3;4	0.00089427	8710	DP1145_12	120.32	86.125			35077000	2149	398	2012	3586;3587	5259;5260;5261	5260		2	9606
RPENSLLEETLHFDHAVR	Unmodified	2162.0869	0.086864532	40	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2.5	0.5		1	1			18.328	18.328	4	0.00063303	12918	DP1145_13	104.76	72.583			198700000	2150	40	2013	3588;3589	5262;5263;5264;5265	5264		4	9606
RPGAALDPGCVLAK	Unmodified	1423.7606	0.76056836	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.487	16.487	2;3	4.2058E-15	8505	DP1145_11	147.28	99.189			456310000	2151	441	2014	3590;3591	5266;5267	5267		2	9606
RPILTIITLEDSSGNLLGR	Unmodified	2067.1688	0.16880325	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	1	3	0			1			21.078	21.078	3	0.010872	17241	DP1145_13	69.747	57.28			99823000	2152	116	2015	3592	5268	5268		1	9606
RPISADSAIMNPASK	Oxidation (M)	1572.793	0.7929907	408	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	1	1	3.33	1.7	1			1	1	14.844	14.844	3	0.0012412	6634	DP1145_15	103.77	80.882			28323000	2153	408	2016	3593;3594;3595	5269;5270;5271;5272	5272	302	4	9606
RPKEEEWDPEYTPK	Unmodified	1802.8475	0.84752869	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	2	0		1				15.669	15.669	3	3.6623E-14	9410	DP1145_12	167.89	130.9			42963000	2154	735	2017	3596	5273	5273		1	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	Oxidation (M)	3238.5174	0.51738456	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	3	0			1			15.177	15.177	4	0.0063382	8235	DP1145_13	47.937	24.02			42312000	2155	390	2018	3597	5274;5275;5276	5275	284	3	9606
RSAEEEAADLPTKPTK	Unmodified	1741.8846	0.88464248	598	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	2	4	0				1		14.486	14.486	3	0.008937	6538	DP1145_14	119.04	80.669			11546000	2156	598	2019	3598	5277	5277		0	9606
RSGASEANLIVAK	Unmodified	1314.7256	0.72556306	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				14.767	14.767	3	0.0054533	8153	DP1145_12	85.163	42.738			12854000	2157	278	2020	3599	5278	5278		1	9606
RSLFSEEAANEEK	Unmodified	1508.7107	0.71070086	713	Q9HD15	SRA1	Steroid receptor RNA activator 1	yes	yes	0	0	1	3	0			1			14.73	14.73	3	0.041438	7390	DP1145_13	56.414	24.692			0	2158	713	2021	3600	5279	5279		1	9606
RTEITIVKPQESAHR	Unmodified	1763.9642	0.9642302	750	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	2	3.5	0.5			1	1		13.961	13.961	4	0.0077465	6323	DP1145_13	118.2	77.218			26416000	2159	750	2022	3601;3602	5280;5281	5280		0	9606
RVDPVYIHLAER	Unmodified	1466.7994	0.7993967	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2.2	1.17	2	1	1	1		16.469	16.469	3	4.5636E-06	8671	DP1145_11	152	110.89			428600000	2160	441	2023	3603;3604;3605;3606;3607	5282;5283;5284;5285;5286;5287;5288	5282		7	9606
RVHVTQEDFEMAVAK	Oxidation (M)	1774.8672	0.86721827	353	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	1	1	4	0				1		16.126	16.126	3	0.00076391	9117	DP1145_14	132.51	89.94			24362000	2161	353	2024	3608	5289;5290	5289	260	2	9606
RVIERPPLTQQQAAQK	Unmodified	1862.0486	0.048628533	548	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	2	2	0		1				14.367	14.367	3	0.030444	7458	DP1145_12	108.97	60.444			45060000	2162	548	2025	3609	5291	5291		1	9606
RVSALNSVHCEHVEDEGESR	Unmodified	2309.0455	0.045470003	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.435	14.435	3	0.0011452	5582	DP1145_11	120.56	90.76			0	2163	441	2026	3610	5292	5292		1	9606
RYDDPEVQKDIK	Unmodified	1504.7522	0.75217174	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	2	3	0			1			14.238	14.238	3	0.023853	6697	DP1145_13	132.14	70.91			31122000	2164	255	2027	3611	5293	5293		0	9606
SAEEEAADLPTKPTK	Unmodified	1585.7835	0.78353145	598	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	4.33	0.471				2	1	14.887	14.887	2;3	0	7218	DP1145_14	354.97	266.48			315130000	2165	598	2028	3612;3613;3614	5294;5295;5296;5297;5298	5294		5	9606
SAEFLLHMLK	Unmodified	1187.6373	0.63726532	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	19.593	19.593	2	0.019602	13763	DP1145_15	117.4	69.824			40171000	2166	198	2029	3615	5299	5299		0	9606
SAHIQASGHLEEQTPR	Unmodified	1759.8602	0.86015906	619	Q96BT3	CENPT	Centromere protein T	yes	yes	0	0	0	3	0			1			13.938	13.938	3	1.2324E-15	6243	DP1145_13	168.45	142.91			12683000	2167	619	2030	3616	5300	5300		1	9606
SAHLQWMVVR	Acetyl (Protein N-term)	1267.6496	0.64956134	285	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	5	0					1	19.637	19.637	2	0.011913	14057	DP1145_15	76.1	38.013			12709000	2168	285	2031	3617	5301	5301		1	9606
SAPFFIPTIPGLVPR	Unmodified	1610.9184	0.91844921	593	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					22.936	22.936	2	0.0057942	18403	DP1145_11	100.69	70.295			2292000	2169	593	2032	3618	5302	5302		1	9606
SAPLMPCPLAMSLAR	Acetyl (Protein N-term);Oxidation (M)	1671.8147	0.81465412	793				yes	yes	1	1	0	2	0		1				15.068	15.068	3	0.043467	8656	DP1145_12	44.436	16.453	+		5658500	2170	793	2033	3619	5303	5303	555	1	9606
SCEVLFNPFDDIIPR	Unmodified	1820.8767	0.87672033	542	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	0	0	0	3	0			2			23.076	23.076	2	5.4477E-10	19924	DP1145_13	176.32	119.36			0	2171	542	2034	3620;3621	5304;5305	5304		2	9606
SCNCLLLK	Unmodified	1006.494	0.49397191	133	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3	0			1			16.477	16.477	2	0.027588	10225	DP1145_13	90.986	43.904			61021000	2172	133	2035	3622	5306	5306		1	9606
SCSGVEFSTSGSSNTDTGK	Unmodified	1906.7851	0.78506437	277	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				2		15.604	15.604	2	2.7196E-05	8402	DP1145_14	155.39	118.8			23781000	2173	277	2036	3623;3624	5307;5308	5308		1	9606
SDEAVKPFGLK	Unmodified	1189.6343	0.63428844	295	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	0	1					16.133	16.133	2	0.00041532	8126	DP1145_11	134.26	65.889			7280900	2174	295	2037	3625	5309	5309		1	9606
SDLEMQYETLQEELMALK	2 Oxidation (M)	2202.0072	0.0072017319	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	0	2	1	1		1			22.834	22.834	2	1.8550000000000003E-25	18279	DP1145_11	182.72	135.53		+	10769000	2175	20	2038	3626;3627	5310;5311;5312;5313	5310	18;19	4	9606
SDLEMQYETLQEELMALKK	2 Oxidation (M)	2330.1022	0.10216475	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	1	2	0.816	1	1	1			21.366	21.366	3	4.2591E-12	16134	DP1145_11	164.82	126.97		+	95086000	2176	20	2039	3628;3629;3630	5314;5315;5316;5317;5318	5314	18;19	5	9606
SDLEMQYETLQEELMALKK	Oxidation (M)	2314.1073	0.10725013	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	3	0			1			21.552	21.552	3	0.025457	17473	DP1145_13	66.261	45.838		+	16228000	2177	20	2039	3631	5319	5319	18;19	0	9606
SDLSVIQR	Unmodified	916.49779	0.49779495	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				16.128	16.128	2	2.7624E-27	10099	DP1145_12	166.78	95.487			56534000	2178	673	2040	3632	5320;5321	5321		2	9606
SDMNTVLNYIFSHAQVTK	Oxidation (M)	2083.0044	0.004440036	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.213	21.213	2	0.012581	15834	DP1145_11	121.18	99.424			7178800	2179	441	2041	3633	5322	5322	315	1	9606
SDMNTVLNYIFSHAQVTK	Unmodified	2067.0095	0.0095254139	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.63	22.63	3	0.006949	18001	DP1145_11	102.36	57.277			5162300	2180	441	2041	3634	5323;5324;5325	5324		3	9606
SDNGELEDKPPAPPVR	Acetyl (Protein N-term)	1761.8533	0.85334235	447	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	1	0	1	3	0			1			16.677	16.677	2	0.0015753	10416	DP1145_13	125.28	64.85			14200000	2181	447	2042	3635	5326	5326		1	9606
SDQDHSMDEMTAVVKIEK	Acetyl (Protein N-term);Oxidation (M)	2119.9402	0.9401848	141	P08047	SP1	Transcription factor Sp1	yes	yes	1	1	1	4	0				1		24.083	24.083	2	0.033527	20896	DP1145_14	52.463	17.163			2008800	2182	141	2043	3636	5327	5327	112	1	9606
SDSEKLNLDSIIGR	Acetyl (Protein N-term)	1587.8104	0.8104149	350	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	1	0	1	4	0				1		20.362	20.362	2	1.8050000000000002E-31	15602	DP1145_14	183.85	137.94			19988000	2183	350	2044	3637	5328	5328		1	9606
SDVALEVPPKR	Unmodified	1209.6717	0.67173657	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		2				14.867	14.867	2;3	0.033251	8305	DP1145_12	54.471	18.151			13360000	2184	724	2045	3638;3639	5329;5330	5330		2	9606
SEETNTEIVECILK	Unmodified	1663.7975	0.79746695	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				20.078	20.078	2	0.01169	16481	DP1145_12	80.245	37.689			128720000	2185	278	2046	3640	5331	5331		1	9606
SEETNTEIVECILKR	Unmodified	1819.8986	0.89857798	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				19.277	19.277	3	0.0036893	13092	DP1145_11	104.81	56.4			40157000	2186	278	2047	3641;3642	5332;5333;5334	5332		3	9606
SEGALELADVSNELPGLK	Unmodified	1840.9418	0.941823	427	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				20.981	20.981	2	8.3324E-75	17711	DP1145_12	217.46	164.25			3019000	2187	427	2048	3643	5335;5336;5337	5335		3	9606
SEHPGLSIGDTAK	Unmodified	1310.6466	0.64664404	221	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	4	0				1		14.887	14.887	3	0.0034335	7249	DP1145_14	74.537	28.629			40547000	2188	221	2049	3644	5338	5338		1	9606
SEIIPMFSNLASDEQDSVR	Unmodified	2136.9997	0.99974859	231	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	3	0			1			21.339	21.339	2	6.6447E-05	17454	DP1145_13	125.53	104.87			0	2189	231	2050	3645	5339	5339		1	9606
SELDTIDSQHR	Unmodified	1299.6055	0.6055075	272	P43004	SLC1A2	Excitatory amino acid transporter 2	yes	yes	0	0	0	3.67	1.89	1				2	15.108	15.108	3	1.4671E-13	6606	DP1145_11	157.75	121.75			39493000	2190	272	2051	3646;3647;3648	5340;5341;5342;5343	5340		4	9606
SELDVPVEILNITEK	Unmodified	1697.9087	0.90873196	2	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1	0	1					21.85	21.85	2	0.018903	16842	DP1145_11	148.78	91.61			0	2191	2	2052	3649	5344	5344		1	9606
SELVANNVTLPAGEQR	Unmodified	1696.8744	0.87441214	267	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			17.478	17.478	2	3.7017E-06	11667	DP1145_13	202	146.92			37336000	2192	267	2053	3650	5345	5345		1	9606
SEQEFQEQLESAR	Unmodified	1579.7114	0.71142914	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		17.602	17.602	2	1.2512E-167	10579	DP1145_11	262.07	181.38			3107799999.9999995	2193	647	2054	3651;3652;3653;3654	5346;5347;5348;5349;5350;5351;5352	5346		7	9606
SETAPAAPAAAPPAEK	Acetyl (Protein N-term)	1519.7518	0.75183739	184	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	4	0				1		16.394	16.394	2	1.2188E-06	9308	DP1145_14	153.74	27.621			413780000	2194	184	2055	3655	5353;5354;5355	5353		3	9606
SETAPAAPAAAPPAEKAPVKK	Acetyl (Protein N-term)	2043.1001	0.10005498	184	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	2	4	0				1		14.787	14.787	3	0.011013	7168	DP1145_14	63.488	44.91			70887000	2195	184	2056	3656	5356	5356		1	9606
SETAPAAPAAPAPAEK	Unmodified	1477.7413	0.7412727	157	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	4	0				1		14.795	14.795	2	0.0023898	7080	DP1145_14	128.57	5.3097			20781000	2196	157	2057	3657	5357	5357		1	9606
SEVPEDLAGFIELFQTPSHTK	Unmodified	2344.1587	0.15869207	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	4	0				1		22.997	22.997	3	0.034386	19438	DP1145_14	75.215	39.723			2721700	2197	278	2058	3658	5358	5358		0	9606
SFDKGPFATFK	Unmodified	1243.6237	0.62372375	543	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	1	4	0				4		17.859	17.859	2;3	6.2035E-05	11903	DP1145_14	106.67	75.599			41138000	2198	543	2059	3659;3660;3661;3662	5359;5360;5361;5362;5363	5360		5	9606
SFFSEIISSISDVK	Unmodified	1557.7926	0.79263957	386	Q00005;P63151;Q66LE6	PPP2R2B;PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	yes	no	0	0	0	3	0			1			24.535	24.535	2	1.4834999999999999E-22	22078	DP1145_13	177.44	104.59			4167800	2199	386	2060	3663	5364;5365	5364		2	9606
SFGLPSIGR	Unmodified	932.50797	0.50796571	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	1.22	1		1	2		18.919	18.919	2	6.7354E-09	12611	DP1145_11	140.09	53.256			650800000	2200	123	2061	3664;3665;3666;3667	5366;5367;5368;5369;5370;5371	5367		6	9606
SFLLDLLNATGK	Unmodified	1290.7184	0.71835242	42	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	4	0				1		23.189	23.189	2	0.038603	19688	DP1145_14	73.885	22.539			1409700	2201	42	2062	3668	5372	5372		1	9606
SFLSQGQVLK	Unmodified	1105.6132	0.61315906	290	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	5	0					1	17.692	17.692	2	0.027665	10899	DP1145_15	110.31	62.394			6612300	2202	290	2063	3669	5373	5373		0	9606
SFNDDAMLIEK	Oxidation (M)	1297.586	0.58601761	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.5	1.5	1			1		17.602	17.602	2	0.0021852	11572	DP1145_14	121.83	92.668			68198000	2203	647	2064	3670;3671	5374;5375	5375	477	1	9606
SFQEILQIVSPVR	Unmodified	1514.8457	0.84567819	555	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	2	0		1				22.251	22.251	2	0.0048628	19554	DP1145_12	119.45	75.131			0	2204	555	2065	3672	5376	5376		1	9606
SFSRPDHLNSHVR	Unmodified	1550.7702	0.77022184	329	P56270	MAZ	Myc-associated zinc finger protein	yes	yes	0	0	1	4	0				1		13.885	13.885	3	0.013936	5840	DP1145_14	79.744	35.946			5087000	2205	329	2066	3673	5377	5377		1	9606
SFYPEEVSSMVLTK	Oxidation (M)	1631.7753	0.77527495	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			19.079	19.079	2	0.042771	14085	DP1145_13	85.522	47.922			151200000	2206	161	2067	3674	5378	5378	136	0	9606
SGAAQPGAGGAQPGAAQPSR	Unmodified	1734.8398	0.83975797	526	Q5T8A7	PPP1R26	Protein phosphatase 1 regulatory subunit 26	yes	yes	0	0	0	3	1		1		1		13.577	13.577	2	0.0059556	6486	DP1145_12	94.007	62.41			1927600	2207	526	2068	3675;3676	5379;5380;5381	5379		3	9606
SGALDVLQMKEEDVLK	Acetyl (Protein N-term);Oxidation (M)	1831.9237	0.9237301	1	A0A8I5KQE6;P08865	RPSA	40S ribosomal protein SA	yes	no	1	1	1	4	0				1		20.82	20.82	2	7.5532E-05	16284	DP1145_14	122.34	84.663			0	2208	1	2069	3677	5382	5382	0	1	9606
SGASEANLIVAK	Unmodified	1158.6245	0.62445203	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.067	16.067	2	6.877E-12	9965	DP1145_12	164.66	85.174			1261000000	2209	278	2070	3678;3679;3680;3681	5383;5384;5385;5386;5387;5388;5389;5390	5386		8	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	2 Oxidation (M)	3026.3824	0.38237913	392	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	2	1	2	1	1		1			19.381	19.381	3	2.0243E-07	13383	DP1145_11	92.819	75.944			44667000	2210	392	2071	3682;3683	5391;5392;5393	5391	285;286	3	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	Oxidation (M)	3010.3875	0.38746451	392	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	1	0	1					20.097	20.097	3	0.00017595	14304	DP1145_11	71.418	47.95			0	2211	392	2071	3684	5394	5394	285;286	1	9606
SGGGFSSGSAGIINYQR	Unmodified	1656.7856	0.78559713	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				17.768	17.768	2	2.3629E-253	10777	DP1145_11	283.43	244.55		+	74321000	2212	13	2072	3685;3686	5395;5396	5395		0	9606
SGGSGHAVAEPASPEQELDQNK	Unmodified	2207.0091	0.0090677215	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				15.535	15.535	3	3.9749E-05	9225	DP1145_12	133.16	112.51			18578000	2213	278	2073	3687	5397	5397		1	9606
SGGSGHAVAEPASPEQELDQNKGK	Unmodified	2392.1255	0.12549446	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	1.12	1	1	1	1		14.758	14.758	4	2.5418E-17	6002	DP1145_11	160.05	138.06			152840000	2214	278	2074	3688;3689;3690;3691	5398;5399;5400;5401;5402	5398		2	9606
SGKWEGLVYAPPGK	Unmodified	1487.7773	0.77726428	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				17.576	17.576	3	0.023421	12318	DP1145_12	71.529	46.294			22313000	2215	772	2075	3692	5403	5403		0	9606
SGNALFHASTLHR	Unmodified	1409.7164	0.71639536	469	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	3	0			1			15.138	15.138	3	0.005735	7971	DP1145_13	81.239	61.132			9764400	2216	469	2076	3693	5404	5404		1	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	Oxidation (M)	3352.5055	0.50548247	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				18.276	18.276	4	5.0753E-10	13610	DP1145_12	77.505	49.102			61411000	2217	164	2077	3694	5405	5405	147	1	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	Unmodified	2797.3361	0.33609636	394;137;464;113	P04350;P07437;P68371;Q13885;Q9BVA1	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	1	2.75	1.09	1		2	1		21.583	21.583	2;3	1.0607E-167	17686	DP1145_13	263.47	235.82			1116800000	2218	113;137;394;464	2078	3695;3696;3697;3698	5406;5407;5408;5409;5410;5411;5412;5413;5414;5415	5412		10	9606
SGPLFNFDVHDDVR	Unmodified	1616.7583	0.75831975	474	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	0	4	0				1		19.222	19.222	2	0.0014974	13957	DP1145_14	126.76	90.431			0	2219	474	2079	3699	5416	5416		1	9606
SGSEGAGLLLRLHTCMYGK	Unmodified	2049.0136	0.013564934	799				yes	yes	0	0	1	5	0					1	20.172	20.172	3	0.0066406	14568	DP1145_15	57.936	5.9276	+		1915399999.9999998	2220	799	2080	3700	5417	5417		1	9606
SGTTPKPVINSTPGR	Unmodified	1510.8104	0.81035532	651	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	1	2	0		1				14.067	14.067	3	0.00054266	7107	DP1145_12	110.22	75.296			5984400	2221	651	2081	3701	5418	5418		1	9606
SGVDGPHFPLSLSTCLFGR	Unmodified	2045.9993	0.99929508	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.4	1.02	1	2	1	1		21.211	21.211	2;3	2.8162E-11	18126	DP1145_12	161.21	125.47			64252000	2222	278	2082	3702;3703;3704;3705;3706	5419;5420;5421;5422;5423;5424;5425;5426;5427;5428	5424		10	9606
SGVSDHWALDDHHALHLTR	Unmodified	2166.0355	0.035497664	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.4	0.49			3	2		16.668	16.668	2;3;4;5	0.00039207	10452	DP1145_13	122.5	89.373			2882200000	2223	710	2083	3707;3708;3709;3710;3711	5429;5430;5431;5432;5433;5434	5430		6	9606
SGVSLAALKK	Unmodified	972.59678	0.59678072	184;157	P10412;P16402;P16403	HIST1H1E;HIST1H1D;HIST1H1C	Histone H1.4;Histone H1.3;Histone H1.2	no	no	0	0	1	4	0				1		15.236	15.236	2	0.022567	7744	DP1145_14	98.033	59.241			52190000	2224	157;184	2084	3712	5435	5435		1	9606
SHFEQWGTLTDCVVMRDPNTK	Unmodified	2520.1526	0.15257761	151	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		18.76	18.76	3	2.7416E-05	13196	DP1145_14	146.28	128.34			23113000	2225	151	2085	3713	5436	5436		1	9606
SHTILLVQPTK	Acetyl (Protein N-term)	1277.7343	0.73433683	405	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	5	0					1	17.893	17.893	2	4.2209E-23	11302	DP1145_15	192.26	166.64			0	2226	405	2086	3714	5437	5437		1	9606
SIATLAITTLLK	Unmodified	1243.7751	0.77513901	743	Q9UBF2;Q9Y678	COPG2;COPG1	Coatomer subunit gamma-2;Coatomer subunit gamma-1	yes	no	0	0	0	2	0		1				22.43	22.43	2	0.018032	19750	DP1145_12	78.655	47.582			6430700	2227	743	2087	3715	5438;5439;5440	5438		3	9606
SIDPDSIQSALLASGLGSK	Unmodified	1857.9684	0.96837211	2	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1	0	1					21.752	21.752	2	0.004198	16764	DP1145_11	98.676	61.722			2347000	2228	2	2088	3716	5441	5441		1	9606
SIFASPESVTGK	Unmodified	1221.6241	0.62411768	91	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	4	0				1		17.659	17.659	2	0.014476	11527	DP1145_14	82.417	44.605			22200000	2229	91	2089	3717	5442	5442		1	9606
SIFQHIQSAQSQR	Unmodified	1528.7746	0.77463852	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0.707	1	2	1			16.248	16.248	2;3	0.00063864	10343	DP1145_12	108.32	66.499			208610000	2230	772	2090	3718;3719;3720;3721	5443;5444;5445;5446	5444		3	9606
SIGVPIK	Acetyl (Protein N-term)	754.45889	0.45889025	364	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	1	0	0	5	0					1	18.692	18.692	1	0.0053887	12558	DP1145_15	88.643	32.133			41239000	2231	364	2091	3722	5447;5448	5448		2	9606
SILDQSISSFMR	Unmodified	1382.6864	0.68640036	34	O00338	SULT1C2	Sulfotransferase 1C2	yes	yes	0	0	0	3	0			1			19.68	19.68	2	0.0030163	15215	DP1145_13	97.565	11.221			519520000	2232	34	2092	3723	5449	5449		1	9606
SILLSVPLLVVDNK	Unmodified	1508.9178	0.91778051	317	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	0	1					22.388	22.388	2	0.0010129	17666	DP1145_11	106.62	53.893			1687600	2233	317	2093	3724	5450;5451;5452	5452		3	9606
SILTQIDHILMDKER	Oxidation (M)	1826.956	0.95603328	734	Q9NY61	AATF	Protein AATF	yes	yes	0	1	1	3	0			1			20.679	20.679	3	0.024625	16665	DP1145_13	62.287	31.956			163570000	2234	734	2094	3725	5453	5453	528	1	9606
SILTQIDHILMDKER	Unmodified	1810.9611	0.96111866	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	3	0			1			21.078	21.078	3	0.010569	17125	DP1145_13	106.52	74.91			61998000	2235	734	2094	3726	5454	5454		1	9606
SILVSPTGPSR	Unmodified	1112.619	0.61897272	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.5	1.12		1	1	1	1	16.403	16.403	2	2.8825E-43	10494	DP1145_12	195.79	105.08			3040699999.9999995	2236	480	2095	3727;3728;3729;3730	5455;5456;5457;5458;5459;5460;5461;5462;5463;5464;5465;5466	5456		12	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	Oxidation (M)	2676.216	0.21596573	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.75	1.09	1		2	1		17.633	17.633	2;3	2.8811E-70	12030	DP1145_13	201.96	182.43			532700000	2237	647	2096	3731;3732;3733;3734	5467;5468;5469;5470;5471;5472;5473;5474	5469	484	8	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	Unmodified	2660.2211	0.22105111	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			2			18.479	18.479	2;3	0.00084405	13486	DP1145_13	87.824	81.504			533160000	2238	647	2096	3735;3736	5475;5476	5476		2	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	Oxidation (M)	3169.4557	0.4556955	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.2	1.17	2	1	1	1		16.477	16.477	4;5	1.1018E-08	10187	DP1145_13	107.34	90.479			465940000	2239	647	2097	3737;3738;3739;3740;3741	5477;5478;5479;5480;5481;5482;5483	5482	484	6	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	Unmodified	3153.4608	0.46078088	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.67	1.25	1		1	1		17.184	17.184	4	5.4711E-07	11210	DP1145_13	114.21	92.585			331770000	2240	647	2097	3742;3743;3744	5484;5485;5486	5485		2	9606
SIMSYNGGAVMAMK	Acetyl (Protein N-term);3 Oxidation (M)	1548.6622	0.6622358	297	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	1	3	0	5	0					1	14.969	14.969	2	0.039989	6833	DP1145_15	40.496	18.158			0	2241	297	2098	3745	5487	5487	231;232;233	1	9606
SINPDEAVAYGAAVQAAILMGDK	Oxidation (M)	2319.1417	0.1416618	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			2			22.642	22.642	2;3	0.00051321	19351	DP1145_13	103.74	80.753			72885000	2242	156	2099	3746;3747	5488;5489;5490;5491	5491	125	4	9606
SINPDEAVAYGAAVQAAILMGDK	Unmodified	2303.1467	0.14674718	156	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			2			23.308	23.308	2;3	1.6211E-64	20315	DP1145_13	205.98	178.31			52623000	2243	156	2099	3748;3749	5492;5493;5494;5495;5496	5494		5	9606
SINPDEAVAYGAAVQAAILSGDK	Unmodified	2259.1383	0.13829098	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3.33	0.471			2	1		22.742	22.742	2;3	9.1529E-117	19517	DP1145_13	229.69	194.64			132930000	2244	161	2100	3750;3751;3752	5497;5498;5499;5500;5501	5498		5	9606
SIPHPGYSHPGHSNDLMLIKLNR	Oxidation (M)	2598.3125	0.31252415	778	Q9Y337	KLK5	Kallikrein-5	yes	yes	0	1	1	4	0				1		16.107	16.107	4	0.037985	9214	DP1145_14	45.469	20.212			39913000	2245	778	2101	3753	5502	5502	546	0	9606
SIQFVDWCPTGFK	Unmodified	1583.7442	0.74424959	393	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	yes	no	0	0	0	2.67	1.25	1		1	1		21.074	21.074	2	9.9095E-69	17091	DP1145_13	210.08	159.6			736450000	2246	393	2102	3754;3755;3756	5503;5504;5505;5506;5507;5508	5505		6	9606
SISADDDLQESSR	Unmodified	1421.627	0.62703081	197	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	4	0				1		15.61	15.61	2	0.0027951	8278	DP1145_14	120.77	81.466			0	2247	197	2103	3757	5509	5509		1	9606
SISISVAR	Unmodified	831.48142	0.48141661	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.41	1	1	1	1	1	16.082	16.082	2	3.5891E-28	7945	DP1145_11	173.59	40.632		+	1508499999.9999998	2248	13	2104	3758;3759;3760;3761;3762	5510;5511;5512;5513;5514;5515;5516;5517;5518;5519	5510		10	9606
SISLYYTGEK	Unmodified	1159.5761	0.57610486	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	1		1		1		17.576	17.576	2	0.00016327	12563	DP1145_12	114.89	80.708			84163000	2249	199	2105	3763;3764	5520;5521	5520		2	9606
SKKDDINLLPSK	Unmodified	1356.7613	0.76127986	759	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	2	2	0		1				14.967	14.967	3	0.00376	8367	DP1145_12	107.65	44.554			5226700	2250	759	2106	3765	5522	5522		1	9606
SKSEEAHAEDSVMDHHFR	Oxidation (M)	2126.9076	0.90757954	582	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	1	1	3.5	0.5			1	1		13.911	13.911	4	0.010286	6289	DP1145_13	75.564	60.543			37094000	2251	582	2107	3766;3767	5523;5524;5525	5524	434	2	9606
SLADELALVDVLEDK	Unmodified	1628.8509	0.85088273	136	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		23.362	23.362	2	9.0572E-16	19910	DP1145_14	198.55	159.67			1981800	2252	136	2108	3768	5526;5527	5526		2	9606
SLASVSYAAVDFFRPSAQR	Unmodified	2071.0487	0.048688112	660	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	1	3	0			1			20.779	20.779	3	0.023871	16822	DP1145_13	67.416	38.693			35979000	2253	660	2109	3769	5528	5528		1	9606
SLCREEAETPAEATGKPQR	Unmodified	2129.0171	0.017129987	581	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	2	2	0		1				14.067	14.067	4	0.0072647	7082	DP1145_12	105.5	79.891			10827000	2254	581	2110	3770	5529	5529		1	9606
SLDFPQNEPQIK	Unmodified	1414.7092	0.70924429	586	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	3	0			1			17.85	17.85	2	0.00069032	12245	DP1145_13	120.45	88.582			52963000	2255	586	2111	3771	5530;5531;5532	5530		3	9606
SLDLDSIIAEVK	Unmodified	1301.7078	0.70784731	13;25	P04264;CON__P04264;CON__Q8BGZ7;CON__Q922U2;CON__Q5XQN5	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2.5	1.12	1	1	1	1		22.049	22.049	2	1.2332E-42	17054	DP1145_11	195.27	135.92		+	793260000	2256	13;25	2112	3772;3773;3774;3775	5533;5534;5535;5536;5537;5538;5539;5540;5541	5535		9	9606
SLDMDSIIAEVK	Unmodified	1319.6643	0.66426794	14	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3	0			1			21.196	21.196	2	0.028085	17251	DP1145_13	82.831	34.229		+	0	2257	14	2113	3776	5542	5542		1	9606
SLDMDSIIAEVK	Oxidation (M)	1335.6592	0.65918256	14	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	4	0				1		18.86	18.86	2	1.4025E-10	13252	DP1145_14	160.53	107.04		+	36268000	2258	14	2113	3777	5543	5543	10	1	9606
SLEDALAEAQR	Unmodified	1201.5939	0.59388018	99	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	2	0		1				18.426	18.426	2	0.023906	13842	DP1145_12	77.662	9.7653			4317700	2259	99	2114	3778	5544	5544		1	9606
SLEEDQEPIVSHQKPGK	Unmodified	1919.9589	0.95887005	472	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	3	1		2		2		14.376	14.376	3;4	0.00022788	7469	DP1145_12	142.95	95.31			94521000	2260	472	2115	3779;3780;3781;3782	5545;5546;5547;5548;5549;5550;5551;5552	5546		7	9606
SLEEIYLFSLPIK	Unmodified	1550.8596	0.85959692	182	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	2.5	1.5	1			1		22.98	22.98	2	0	19395	DP1145_14	304.63	217.73			36940000	2261	182	2116	3783;3784	5553;5554;5555;5556	5555		4	9606
SLEGADLPNLLFYGPPGTGK	Unmodified	2045.047	0.046956778	242	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	4	0				1		22.283	22.283	2	0.0005389	18460	DP1145_14	184	149.82			13133000	2262	242	2117	3785	5557	5557		1	9606
SLETVYLER	Unmodified	1108.5764	0.57643921	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		17.959	17.959	2	0.003001	12188	DP1145_14	105.14	52.733			347820000	2263	499	2118	3786	5558	5558		1	9606
SLGEKAPLR	Unmodified	969.56073	0.56072956	722	Q9NR61	DLL4	Delta-like protein 4	yes	yes	0	0	1	2.5	1.5	1			1		15.926	15.926	2	0.00047757	8767	DP1145_14	120.62	28.151			604860000	2264	722	2119	3787;3788	5559;5560;5561	5561		3	9606
SLGNILQAKPTSSPAK	Unmodified	1610.8992	0.89917033	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2	0.707	1	2	1			16.342	16.342	2;3	0.0041621	10493	DP1145_12	107.13	66.452			135740000	2265	451	2120	3789;3790;3791;3792	5562;5563;5564;5565	5563		4	9606
SLGPPQGEEDSVPR	Unmodified	1466.7001	0.70013617	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.176	16.176	2	0.00058235	8125	DP1145_11	123.01	81.927			30031000	2266	400	2121	3793	5566;5567	5567		2	9606
SLIDNFALNPDILCSAK	Unmodified	1889.9557	0.95569893	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	0	2					22.267	22.267	2	0.0033028	17529	DP1145_11	129.77	91.138			1796900	2267	529	2122	3794;3795	5568;5569	5569		2	9606
SLLPDFLQTPK	Unmodified	1257.6969	0.69688869	319	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	4	0				1		21.011	21.011	2	0.003413	16561	DP1145_14	114.89	77.083			1756700	2268	319	2123	3796	5570	5570		1	9606
SLMPYFLLTQAVR	Oxidation (M)	1553.8276	0.82758529	55	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	1	0	1	0	1					21.528	21.528	2	0.031828	16418	DP1145_11	88.155	45.072			4181200	2269	55	2124	3797	5571	5571	44	1	9606
SLNNQFASFIDK	Unmodified	1382.683	0.68302954	13	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0.816	1	1	1			19.68	19.68	2	0.00060473	15889	DP1145_12	137.46	52.105		+	519520000	2270	13	2125	3798;3799;3800	5572;5573;5574;5575	5573		4	9606
SLNNQFASFIDKVR	Unmodified	1637.8526	0.85255449	13	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1.5	0.5	1	1				19.857	19.857	3	0.00053935	13991	DP1145_11	128.21	78.857		+	346930000	2271	13	2126	3801;3802	5576;5577;5578	5577		2	9606
SLPDLGLR	Unmodified	869.49707	0.49706667	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		18.365	18.365	2	0.00023554	11838	DP1145_11	123.99	81.514			183680000	2272	164	2127	3803;3804	5579;5580	5579		2	9606
SLPDTELMKDTAR	Oxidation (M)	1491.7239	0.72390808	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2.5	1.12	1	1	1	1		15.304	15.304	3	0.0052331	9051	DP1145_12	80.905	53.229			247770000	2273	278	2128	3805;3806;3807;3808	5581;5582;5583;5584;5585	5583	221	3	9606
SLPDTELMKDTAR	Unmodified	1475.729	0.72899346	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.658	16.658	3	0.027897	11545	DP1145_12	50.46	8.7703			32147000	2274	278	2128	3809	5586	5586		1	9606
SLSLSILK	Unmodified	859.53787	0.53786886	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.5	0.5		1	1			18.878	18.878	2	3.1483E-20	14645	DP1145_12	157.21	57.834			388020000	2275	520	2129	3810;3811	5587;5588;5589	5587		3	9606
SLTNDWEDHLAVK	Unmodified	1526.7365	0.73652168	143;138	P08238;P07900	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	no	no	0	0	0	3	0			2			18.196	18.196	2;3	0.0078868	13030	DP1145_13	97.813	64.774			40110000	2276	143;138	2130	3812;3813	5590;5591	5590		2	9606
SLVASLAEPDFVVTDFAK	Unmodified	1907.988	0.98804492	206	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	2	0		1				22.203	22.203	2	0.0020778	19489	DP1145_12	135.91	95.758			1793700	2277	206	2131	3814	5592;5593	5592		2	9606
SLVEIIEHGLVDEQQK	Unmodified	1835.9629	0.9628928	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				21.341	21.341	2;3	3.1525E-199	18192	DP1145_12	271.01	201.33			13103000	2278	84	2132	3815;3816	5594;5595;5596;5597	5596		4	9606
SLVGLQEELLFQYPDTR	Unmodified	2007.0313	0.031306713	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	3	0			1			22.275	22.275	2	0.041727	18969	DP1145_13	70.563	28.738			6992000	2279	734	2133	3817	5598	5598		1	9606
SLVMHTPPVLK	Oxidation (M)	1236.69	0.69002918	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		2				15.467	15.467	2;3	0.00072155	9026	DP1145_12	114.86	70.509			122740000	2280	278	2134	3818;3819	5599;5600	5599	213	2	9606
SLVQANPEVAMDSIIHMTQHISPTQR	2 Oxidation (M)	2934.4328	0.43277522	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2.8	1.6	2		1	1	1	17.873	17.873	3;4	9.1196E-06	11077	DP1145_11	95.834	73.521			510030000	2281	441	2135	3820;3821;3822;3823;3824	5601;5602;5603;5604;5605;5606;5607	5602	333;334	6	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Oxidation (M)	2918.4379	0.43786059	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.25	1.3	2		1	1		19.73	19.73	4	7.681E-09	13040	DP1145_11	138	113.54			237490000	2282	441	2135	3825;3826;3827;3828	5608;5609;5610;5611;5612;5613	5609	333;334	5	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Unmodified	2902.4429	0.44294597	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.175	21.175	3;4	0.0028083	15975	DP1145_11	74.579	60.315			16923000	2283	441	2135	3829;3830	5614;5615	5615		2	9606
SMATIMTDEIFHDVAYK	2 Oxidation (M)	2002.9016	0.90161445	513	Q2Y0W8	SLC4A8	Electroneutral sodium bicarbonate exchanger 1	yes	yes	0	2	0	2	0		1				15.368	15.368	3	0.042089	9014	DP1145_12	46.3	24.497			20294000	2284	513	2136	3831	5616	5616	394;395	0	9606
SMPIRKDDEVQVVR	Oxidation (M)	1686.8723	0.87230365	340	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	1	2	5	0					1	14.035	14.035	3	0.024304	5463	DP1145_15	81.128	35.136			32898000	2285	340	2137	3832	5617	5617	255	1	9606
SMRQAAADAKPESLMK	2 Oxidation (M)	1764.8499	0.84985365	601	Q8WYA0	IFT81	Intraflagellar transport protein 81 homolog	yes	yes	0	2	2	5	0					1	24.775	24.775	2	0.029918	21033	DP1145_15	62.528	34.884			1187600	2286	601	2138	3833	5618	5618	445;446	1	9606
SNEILTAIIQGMR	Unmodified	1444.7708	0.77079869	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				22.509	22.509	2	0.0018461	19905	DP1145_12	99.973	21.457			1350600	2287	484	2139	3834	5619;5620	5619		2	9606
SNTSLPPLPFKR	Unmodified	1355.7561	0.75613491	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				17.576	17.576	3	0.019604	12433	DP1145_12	69.261	39.958			22172000	2288	278	2140	3835	5621	5621		1	9606
SNYNFEKPFLWLAR	Unmodified	1783.9046	0.90459006	371	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	1	4	0				1		20.961	20.961	3	0.016463	16559	DP1145_14	89.189	60.213			20613000	2289	371	2141	3836	5622	5622		1	9606
SPAGPAATPAQAQAASTPR	Unmodified	1748.8806	0.88056015	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.964	14.964	2	6.9818E-111	8195	DP1145_12	235.93	185.65			258400000	2290	451	2142	3837;3838;3839;3840	5623;5624;5625;5626;5627;5628;5629	5624		7	9606
SPAQILQWQVLSNTVPAK	Unmodified	1979.084	0.084010986	10	CON__P02668			yes	yes	0	0	0	2.33	1.25	1	1		1		21.058	21.058	2	2.106E-24	15755	DP1145_11	227.91	190.98		+	35949000	2291	10	2143	3841;3842;3843	5630;5631;5632	5630		3	
SPDFTNENPLETR	Unmodified	1518.6951	0.69505079	119	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2	0		1				18.176	18.176	2	1.7824E-10	13513	DP1145_12	169.82	96.589			15589000	2292	119	2144	3844	5633;5634	5633		2	9606
SPEVLLGSAR	Unmodified	1027.5662	0.56620887	130	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		16.772	16.772	2	0.017956	10179	DP1145_14	87.639	17.641			155690000	2293	130	2145	3845	5635	5635		1	9606
SPISVAAAAIYMASQASAEK	Oxidation (M)	1980.9826	0.98264196	407	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	0	1	0	4	0				1		21.991	21.991	3	0.043358	18050	DP1145_14	47.729	27.341			4377600	2294	407	2146	3846	5636	5636	301	1	9606
SPLHIKDDVLPK	Unmodified	1360.7715	0.77145062	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	1	1	0	1					16.107	16.107	3	0.040481	8043	DP1145_11	57.567	20.995			13429000	2295	529	2147	3847	5637	5637		1	9606
SPLLPAVLEGLAK	Unmodified	1306.786	0.78603805	596	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	1.5	0.5	1	1				21.653	21.653	2	0.00045824	18684	DP1145_12	123.51	80.487			20428000	2296	596	2148	3848;3849	5638;5639;5640;5641	5639		4	9606
SPLQSVVVR	Unmodified	983.57638	0.57637963	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.5	0.5	1	1				16.54	16.54	2	6.8193E-37	10696	DP1145_12	189.82	117.04			61421000	2297	772	2149	3850;3851	5642;5643;5644;5645	5643		4	9606
SPLVAAMQHFLPVLK	Oxidation (M)	1665.9276	0.92763369	101	O95373	IPO7	Importin-7	yes	yes	0	1	0	2	0		1				19.277	19.277	3	0.0026138	15169	DP1145_12	86.699	41.934			7121800	2298	101	2150	3852	5646;5647	5647	64	2	9606
SPLVAAMQHFLPVLK	Unmodified	1649.9327	0.93271906	101	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				21.959	21.959	2	1.0657E-09	19131	DP1145_12	174.42	130.46			0	2299	101	2150	3853	5648	5648		1	9606
SPNLWLK	Unmodified	856.48069	0.48068833	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.97	17.97	2	0.02592	10988	DP1145_11	93.593	50.527			16738000	2300	400	2151	3854	5649	5649		1	9606
SPPHCELMAGHLR	Unmodified	1503.7075	0.70748693	570	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	2	0		1				14.967	14.967	3	0.03832	8261	DP1145_12	58.098	32.398			4587800	2301	570	2152	3855	5650	5650		1	9606
SPPPELTDTATSTK	Unmodified	1443.7093	0.70930387	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			15.465	15.465	2	1.9649999999999998E-32	8481	DP1145_13	191.33	136.35			165730000	2302	278	2153	3856;3857;3858	5651;5652;5653;5654;5655;5656	5656		5	9606
SPPPELTDTATSTKR	Unmodified	1599.8104	0.8104149	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				14.568	14.568	3	0.0045173	7850	DP1145_12	85.909	46.903			61539000	2303	278	2154	3859	5657	5657		1	9606
SPPPESMDTPTSTR	Oxidation (M)	1517.6668	0.66678713	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				13.96	13.96	2	0.029569	6835	DP1145_12	87.713	53.507			746070	2304	278	2155	3860	5658	5658	222	1	9606
SPPPESMDTPTSTR	Unmodified	1501.6719	0.67187251	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.867	14.867	2	1.8118E-10	8262	DP1145_12	163.84	136.01			15975000	2305	278	2155	3861	5659;5660;5661	5659		3	9606
SPPPESVDTPTSTK	Unmodified	1441.6937	0.69365381	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.365	14.365	2	1.1024E-31	6450	DP1145_14	187.31	152.04			319860000	2306	278	2156	3862;3863;3864;3865;3866	5662;5663;5664;5665;5666;5667;5668;5669;5670	5668		8	9606
SPQNQYPAELMR	Unmodified	1432.6769	0.67689831	240	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	3	0			1			17.378	17.378	2	1.9455E-08	11584	DP1145_13	155.15	125.6			18704000	2307	240	2157	3867	5671;5672;5673	5671		3	9606
SPQPDPVDTPASTK	Unmodified	1438.694	0.69398816	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.664	14.664	2	3.8119000000000004E-70	7871	DP1145_12	218.02	144.79			197540000	2308	278	2158	3868;3869;3870;3871	5674;5675;5676;5677;5678;5679	5675		6	9606
SPQPDPVGTPTIFKPQSK	Unmodified	1923.0102	0.010177341	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0.816	1	1	1			17.074	17.074	3	2.0126E-12	11650	DP1145_12	165.66	139.82			300520000	2309	278	2159	3872;3873;3874	5680;5681;5682;5683	5681		3	9606
SPQVKPASTMGMGPLGK	2 Oxidation (M)	1716.8539	0.85387639	451	Q13428	TCOF1	Treacle protein	yes	yes	0	2	1	2.5	1.12	1	1	1	1		14.216	14.216	3	0.0008869	5377	DP1145_11	118.71	88.601			141330000	2310	451	2160	3875;3876;3877;3878	5684;5685;5686;5687;5688	5684	344;345	5	9606
SPQVKPASTMGMGPLGK	Oxidation (M)	1700.859	0.85896177	451	Q13428	TCOF1	Treacle protein	yes	yes	0	1	1	2	0		1				15.331	15.331	3	0.0011203	8796	DP1145_12	117.13	89.455			20250000	2311	451	2160	3879	5689;5690;5691	5690	344;345	3	9606
SPSDEYKDNLHQVSK	Unmodified	1745.822	0.82204222	758	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	4	0				1		14.476	14.476	3	0.00039454	6472	DP1145_14	154.13	115.15			29190000	2312	758	2161	3880	5692;5693;5694	5693		3	9606
SPSELFAQHIVTIVHHVK	Unmodified	2041.1109	0.11089444	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2.5	0.5		1	1			18.678	18.678	3;4	0.0134	14348	DP1145_12	76.768	46.175			77884000	2313	772	2162	3881;3882	5695;5696	5695		1	9606
SPTWFGIPR	Unmodified	1059.5502	0.55016488	398	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				19.815	19.815	2	0.015929	15963	DP1145_12	90.37	49.592			4102500	2314	398	2163	3883	5697	5697		1	9606
SPYQEFTDHLVK	Unmodified	1462.7092	0.70924429	182	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				2		18.275	18.275	2;3	3.7273E-08	12417	DP1145_14	158.34	125.48			312900000	2315	182	2164	3884;3885	5698;5699;5700	5698		3	9606
SQEDEISSPVNK	Unmodified	1331.6205	0.62048887	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	2	0		1				15.168	15.168	2	0.0093637	8603	DP1145_12	88.134	4.1354			17406000	2316	529	2165	3886	5701	5701		1	9606
SQEEPKDTFEHDPSESIDEFNK	Unmodified	2607.1249	0.12488534	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		2				17.176	17.176	3;4	0.00064752	11913	DP1145_12	112.44	96.425			78924000	2317	735	2166	3887;3888	5702;5703;5704	5702		2	9606
SQEQILEILR	Unmodified	1227.6823	0.68230126	169	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	2	0		1				19.82	19.82	2	0.032073	16099	DP1145_12	76.465	45.896			2654500	2318	169	2167	3889	5705	5705		1	9606
SQICDNAALYAQK	Unmodified	1480.698	0.69802768	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				16.475	16.475	2	0.0015582	10712	DP1145_12	100.88	53.691			32771000	2319	322	2168	3890	5706	5706		1	9606
SQKENVLQYCR	Unmodified	1423.6878	0.68779734	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				14.967	14.967	3	0.002634	8224	DP1145_12	131.83	81.343			47291000	2320	278	2169	3891	5707	5707		0	9606
SQKQEEENPAEETGEEKQDTQEK	Acetyl (Protein N-term)	2732.1897	0.18967044	63	O43768	ENSA	Alpha-endosulfine	yes	yes	1	0	2	5	0					1	14.295	14.295	3	0.00026953	5835	DP1145_15	111.45	92.127			0	2321	63	2170	3892	5708	5708		1	9606
SQLLILDR	Unmodified	956.56548	0.56548059	346	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	1	0	1					18.561	18.561	2	0.035163	11978	DP1145_11	85.161	28.113			4990400	2322	346	2171	3893	5709	5709		1	9606
SQLLQYVYNLVPR	Unmodified	1591.8722	0.8722273	239	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	3	0			1			22.84	22.84	2	4.0162E-11	19564	DP1145_13	163.94	102.18			4288500	2323	239	2172	3894	5710	5710		1	9606
SQPDPVDTPTSSKPQSK	Unmodified	1797.8745	0.87447172	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	1.12	1	1	1	1		13.141	13.141	3	1.2683E-44	6211	DP1145_12	200	152.39			39254000	2324	278	2173	3895;3896;3897;3898	5711;5712;5713;5714;5715;5716;5717;5718;5719;5720;5721	5716		11	9606
SQVFSTAADGQTQVEIK	Unmodified	1807.8952	0.89520716	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.478	17.478	2	1.1581E-15	11703	DP1145_13	168.61	122.78			54023000	2325	255	2174	3899	5722;5723	5722		2	9606
SQYEQLAEQNR	Unmodified	1364.6321	0.6320566	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2	1	1		1			15.568	15.568	2	0.012802	7440	DP1145_11	88.496	64.465		+	203420000	2326	18	2175	3900;3901	5724;5725	5724		2	9606
SREIFLSQPILLELEAPLK	Unmodified	2195.2566	0.25655562	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.5	0.5			2	2		22.275	22.275	2;3	7.234E-91	18821	DP1145_13	224.06	195.78			105230000	2327	252;350;351	2176	3902;3903;3904;3905	5726;5727;5728;5729;5730;5731	5727		6	9606
SRYEQVDLVGK	Unmodified	1292.6725	0.67246486	660	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	1	3	0			1			15.541	15.541	2	0.0021979	8587	DP1145_13	118.4	65.921			111740000	2328	660	2177	3906	5732;5733	5732		2	9606
SSATSGDIWPGLSAYDNSPR	Unmodified	2079.9498	0.94976193	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		1				20.237	20.237	2	1.9457E-08	16563	DP1145_12	201.3	162.52			0	2329	735	2178	3907	5734	5734		1	9606
SSAVVVDAIPVFLEK	Unmodified	1572.8763	0.87630962	476	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1				21.385	21.385	2	0.0013752	18300	DP1145_12	132.56	87.543			2319400	2330	476	2179	3908	5735;5736	5735		2	9606
SSAWKTPRGSDAMPEIMVK	2 Oxidation (M)	2122.0187	0.018709892	577	Q8N0U7	C1orf87	Uncharacterized protein C1orf87	yes	yes	0	2	2	5	0					1	19.8	19.8	3	0.042482	14161	DP1145_15	44.662	7.8066			0	2331	577	2180	3909	5737	5737	432;433	1	9606
SSDLIQHQATHTGEKPYK	Unmodified	2039.0072	0.007217228	746	Q9UEG4	ZNF629	Zinc finger protein 629	yes	yes	0	0	1	2.33	0.471		2	1			13.757	13.757	3;4	0.0009563	6625	DP1145_12	136.34	90.904			32151000	2332	746	2181	3910;3911;3912	5738;5739;5740;5741;5742	5738		5	9606
SSDQPLTVPVSPK	Unmodified	1353.714	0.71399532	759	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	2	0		1				16.776	16.776	2	0.0097048	11068	DP1145_12	84.479	41.736			9410400	2333	759	2182	3913	5743	5743		1	9606
SSDVHSSGSSDAHMDASGPSDSDMPSR	Oxidation (M)	2721.0515	0.051479176	47	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	1	0	2.5	0.5		1	1			13.852	13.852	4	1.3403E-05	6176	DP1145_13	65.197	50.613			3393200	2334	47	2183	3914;3915	5744;5745	5745	37	0	9606
SSFYPDGGDQETAK	Unmodified	1500.6369	0.63686721	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0.816	1	1	1			16.1	16.1	2	0.00016458	10030	DP1145_12	143	122.87			170910000	2335	735	2184	3916;3917;3918	5746;5747;5748;5749;5750	5748		4	9606
SSGEIVYCGQVFEK	Unmodified	1601.7396	0.73955814	414	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	18.092	18.092	2	0.00040359	11526	DP1145_15	137.01	103.26			66404000	2336	414	2185	3919	5751;5752;5753	5752		3	9606
SSGPTSLFAVTVAPPGAR	Unmodified	1713.905	0.90498399	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0.816	1	1	1			19.909	19.909	2	3.3786E-12	16202	DP1145_12	229.56	184.71			71180000	2337	409	2186	3920;3921;3922	5754;5755;5756	5755		3	9606
SSGPYGGGGQYFAKPR	Unmodified	1627.7743	0.77430417	151	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		15.805	15.805	2;3	6.884E-43	8618	DP1145_14	196.16	162.41			658280000	2338	151	2187	3923;3924	5757;5758;5759;5760	5760		4	9606
SSGQGIDPMLLLTNLGMIK	2 Oxidation (M)	2019.038	0.03804835	646	Q96RD7	PANX1	Pannexin-1	yes	yes	0	2	0	2	0		1				15.467	15.467	3	0.037975	9263	DP1145_12	49.463	7.9212			6577700	2339	646	2188	3925	5761	5761	470;471	1	9606
SSMSGLHLVK	Unmodified	1057.559	0.559015	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.593	15.593	2	3.1347E-08	7342	DP1145_11	141.52	84.799			224820000	2340	441	2189	3926	5762;5763	5762		2	9606
SSQQPSTPQQAPPGQPQQGTFVAHK	Unmodified	2630.2837	0.28372644	565	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	2	0		1				15.268	15.268	3	0.00046922	8824	DP1145_12	83.115	62.688			7349400	2341	565	2190	3927	5764;5765	5764		2	9606
SSQSSSQQFSGIGR	Unmodified	1454.675	0.67498405	611	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			15.541	15.541	2	5.2030999999999996E-23	8585	DP1145_13	181.31	97.666			70969000	2342	611	2191	3928	5766;5767	5766		2	9606
SSTATHPPGPAVQLNK	Unmodified	1603.8318	0.83181904	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3.22	1.31	1	2	2	2	2	14.617	14.617	2;3	1.2011999999999999E-43	7855	DP1145_12	199.12	145.91			2607700000	2343	480	2192	3929;3930;3931;3932;3933;3934;3935;3936;3937	5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786	5772		19	9606
SSTPLHSPSPIR	Unmodified	1277.6728	0.67279921	106	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	3	0			1			14.539	14.539	3	0.04107	7038	DP1145_13	73.435	36.108			15755000	2344	106	2193	3938	5787	5787		0	9606
STAGDTHLGGEDFDNR	Unmodified	1690.7183	0.71830543	161	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0			1			15.541	15.541	3	0.019439	8625	DP1145_13	100.4	81.729			304310000	2345	161	2194	3939	5788	5788		0	9606
STELLIR	Unmodified	830.48617	0.48616764	395	Q71DI3;Q16695;P84243;P68431;Q5TEC6;Q6NXT2	HIST2H3A;HIST3H3;H3F3A;HIST1H3A;HIST2H3PS2;H3F3C	Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3;Histone H3.3C	yes	no	0	0	0	3.25	1.79	1	1			2	16.682	16.682	1;2	2.1582E-55	9343	DP1145_15	193.7	62.044			632350000	2346	395	2195	3940;3941;3942;3943	5789;5790;5791;5792;5793;5794	5791		5	9606
STFREESPLR	Unmodified	1220.6149	0.61494998	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	1	2	0		1				15.145	15.145	3	0.013006	8524	DP1145_12	80.102	41.348			7113200	2347	735	2196	3944	5795	5795		1	9606
STFVLDEFKR	Unmodified	1240.6452	0.64518747	223	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	4	0				1		18.119	18.119	3	0.015341	12277	DP1145_14	81.95	40.957			0	2348	223	2197	3945	5796	5796		1	9606
STGEAFVQFASQEIAEK	Unmodified	1840.8843	0.88430813	236;327	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	3	0			1			20.679	20.679	2	7.7138E-10	16663	DP1145_13	157.03	116.53			209650000	2349	236;327	2198	3946	5797	5797		1	9606
STGLELETPSLVPVKK	Unmodified	1696.9611	0.96110188	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				18.276	18.276	3	4.0534E-05	13576	DP1145_12	164.93	129.22			124740000	2350	644	2199	3947	5798	5798		1	9606
STILAVDNFNGIK	Unmodified	1390.7456	0.7456298	779	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		19.26	19.26	2	4.6102E-11	14003	DP1145_14	163.66	119.29			23375000	2351	779	2200	3948	5799	5799		1	9606
STLINSLFLTDLYPER	Unmodified	1880.9884	0.98837927	487	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	4	0				1		23.101	23.101	2	3.1034E-43	19471	DP1145_14	196.15	154.99			5517300	2352	487	2201	3949	5800;5801	5801		2	9606
STLVGHDTFTK	Unmodified	1204.6088	0.60880197	27	CON__Streptavidin			yes	yes	0	0	0	3.71	1.71	4	1	1	1	10	20.501	20.501	2;3	3.5837E-55	8426	DP1145_15	204.34	118.2		+	146700000000	2353	27	2202	3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966	5802;5803;5804;5805;5806;5807;5808;5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851	5832		50	
STLVGHDTFTKVK	Unmodified	1431.7722	0.7721789	27	CON__Streptavidin			yes	yes	0	0	1	5	0					1	14.696	14.696	3	0.021211	6481	DP1145_15	76.073	34.69		+	12021000	2354	27	2203	3967	5852	5852		1	
STNGDTFLGGEDFDQALLR	Unmodified	2054.9545	0.95451296	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.378	21.378	2	1.5571E-132	17412	DP1145_13	244.71	188.67			25498000	2355	255	2204	3968	5853;5854	5853		2	9606
STSAPQMSPGSSDNQSSSPQPAQQK	Oxidation (M)	2547.1143	0.11433743	470	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	1	0	3	0			1			13.673	13.673	3	0.016002	5827	DP1145_13	47.058	28.548			1030500	2356	470	2205	3969	5855	5855	360	1	9606
SVAHGQAPEMPLVK	Oxidation (M)	1478.7551	0.75514863	509	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	0	4	0				1		14.186	14.186	3	0.0025524	6110	DP1145_14	87.083	57.024			19773000	2357	509	2206	3970	5856	5856	390	1	9606
SVELEEALPVTTAEGMAK	Acetyl (Protein N-term);Oxidation (M)	1931.9398	0.93977409	603	Q92522	H1FX	Histone H1x	yes	yes	1	1	0	4	0				1		21.345	21.345	2	0.00061414	16980	DP1145_14	108.17	30.53			2942900	2358	603	2207	3971	5857	5857	447	1	9606
SVFALTNGIYPHK	Unmodified	1445.7667	0.76669959	415	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		18.66	18.66	3	0.039843	13090	DP1145_14	74.698	44.772			13430000	2359	415	2208	3972	5858	5858		0	9606
SVGFIGAGQLAYALAR	Acetyl (Protein N-term)	1634.878	0.87804096	621	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	1	0	0	4	0				1		24.191	24.191	2	0.0013011	21048	DP1145_14	100.88	67.79			1875900	2360	621	2209	3973	5859	5859		1	9606
SVHCQAGDTVGEGDLLVELE	Unmodified	2126.979	0.97901315	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1	0	1					20.541	20.541	2	6.0317E-07	15003	DP1145_11	148.7	97.449			7645500	2361	123	2210	3974	5860	5860		1	9606
SVHSSVPLLNSK	Unmodified	1266.6932	0.6932003	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					15.49	15.49	2;3	3.3835E-23	7028	DP1145_11	205.59	159.2			329520000	2362	441	2211	3975;3976	5861;5862;5863;5864;5865	5864		5	9606
SVHSSVPLLNSKDPIDR	Unmodified	1862.985	0.98502522	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.6	0.8	3	1	1			16.413	16.413	2;3;4	1.8537E-31	8616	DP1145_11	217.46	165.73			486790000	2363	441	2212	3977;3978;3979;3980;3981	5866;5867;5868;5869;5870;5871;5872	5869		6	9606
SVILEAFSSPSEEVK	Unmodified	1620.8247	0.82466798	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				19.577	19.577	2	0.011426	15522	DP1145_12	128.57	87.166			47580000	2364	566	2213	3982	5873	5873		0	9606
SVLGDVGITEVFSDR	Unmodified	1592.8046	0.80460124	19	CON__P34955			yes	yes	0	0	0	2	0		1				21.328	21.328	2	0.0069422	18189	DP1145_12	97.953	55.615		+	804000	2365	19	2214	3983	5874	5874		1	
SVNELIYKR	Unmodified	1120.6241	0.6240581	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.442	15.442	2	0.02384	8156	DP1145_14	98.629	50.206			21157000	2366	195	2215	3984	5875	5875		1	9606
SVPAFIDISEEDQAAELR	Acetyl (Protein N-term)	2030.9797	0.97966507	550	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	1	0	0	4	0				1		23.563	23.563	2	1.5898E-294	20213	DP1145_14	292.8	198.04			3255100	2367	550	2216	3985	5876;5877	5877		2	9606
SVPNQPSTNEILQAVLK	Unmodified	1836.9945	0.99452728	532	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	2	0		1				20.893	20.893	2	0.016872	17580	DP1145_12	78.705	45.665			3255900	2368	532	2217	3986	5878	5878		1	9606
SVPTTQCLDNSK	Unmodified	1348.6293	0.62927941	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				14.952	14.952	2	0.0012425	8264	DP1145_12	142.36	99.497			0	2369	278	2218	3987	5879	5879		1	9606
SVTCTYSPALNK	Unmodified	1339.6442	0.6442012	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.5	0.5			1	1		15.773	15.773	2	0.00017313	8643	DP1145_14	119.62	59.709			279650000	2370	116	2219	3988;3989	5880;5881;5882;5883	5883		4	9606
SVTEQGAELSNEER	Unmodified	1547.7063	0.70634376	385	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	4.5	0.5				1	1	15.305	15.305	2	3.1983E-149	7798	DP1145_14	263.07	185.39			40114000	2371	385	2220	3990;3991	5884;5885	5884		2	9606
SVTNEDVTQEELGGAK	Unmodified	1675.7901	0.79007339	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		16.381	16.381	2	0	10032	DP1145_13	312.69	250.91			1660199999.9999998	2372	124	2221	3992;3993;3994	5886;5887;5888;5889;5890	5888		5	9606
SVTWPEEGK	Unmodified	1031.4924	0.49237523	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				16.568	16.568	2	0.021222	10842	DP1145_12	85.161	34.095			25909000	2373	644	2222	3995	5891	5891		1	9606
SVVEFLQGYIGVPHGGFPEPFR	Unmodified	2431.2325	0.23246614	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.25	0.829	1	1	2			22.616	22.616	2;3	1.3173999999999999E-19	19363	DP1145_13	185.26	134.36			74544000	2374	164	2223	3996;3997;3998;3999	5892;5893;5894;5895;5896;5897;5898;5899;5900	5899		9	9606
SWLFGINK	Acetyl (Protein N-term)	1005.5284	0.5283668	730	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	1	0	0	3	0			1			23.975	23.975	2	0.0094836	21263	DP1145_13	92.467	31.668			13654000	2375	730	2224	4000	5901	5901		1	9606
SYCAEIAHNVSSK	Unmodified	1464.6667	0.66672755	380	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					2	15.299	15.299	2;3	0.0011036	7360	DP1145_15	98.337	76.425			113520000	2376	380	2225	4001;4002	5902;5903	5903		2	9606
SYELPDGQVITIGNER	Unmodified	1789.8846	0.88464248	335;389	P60709;Q6S8J3;P63267;P68133;P68032;P62736;A5A3E0;Q9BYX7;P63261	ACTB;POTEE;ACTG2;ACTA1;ACTC1;ACTA2;POTEF;POTEKP;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	2.5	1.5	1			1		20.148	20.148	2	0.00082059	14372	DP1145_11	140.01	109.18			259830000	2377	335;389	2226	4003;4004	5904;5905	5904		2	9606
SYLNMDAIMEAIK	Oxidation (M)	1513.7157	0.71565158	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.138	20.138	2	0.0020383	15866	DP1145_13	110.39	68.988			13209000	2378	123	2227	4005	5906	5906	86;87	1	9606
SYLNMDAIMEAIKK	Oxidation (M)	1641.8106	0.8106146	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2	1	1		1			18.928	18.928	3	0.0071519	14013	DP1145_13	78.529	49.061			70514000	2379	123	2228	4006;4007	5907;5908;5909	5909	86;87	3	9606
SYLNMDAIMEAIKK	2 Oxidation (M)	1657.8055	0.80552922	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	1	2.75	1.09	1		2	1		17.619	17.619	2;3	0.0019618	12050	DP1145_13	86.756	56.649			541510000	2380	123	2228	4008;4009;4010;4011	5910;5911;5912;5913;5914;5915	5914	86;87	5	9606
SYLNMDAIMEAIKK	Unmodified	1625.8157	0.81569997	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			2			20.978	20.978	2;3	0.0022025	16894	DP1145_13	129.82	90.197			109610000	2381	123	2228	4012;4013	5916;5917	5916		2	9606
TAAENDFVTLK	Unmodified	1207.6085	0.60846762	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					17.461	17.461	2	0.0050507	10286	DP1145_11	98.044	44.955		+	32721000	2382	21	2229	4014	5918	5918		1	9606
TAAENDFVTLKK	Unmodified	1335.7034	0.70343063	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	0.816		1	1	1		15.672	15.672	2;3	6.1489E-10	9376	DP1145_12	157.66	97.732		+	9584600	2383	21	2230	4015;4016;4017	5919;5920;5921	5919		2	9606
TAAENEFVTLK	Unmodified	1221.6241	0.62411768	6	CON__P48668;CON__P04259;CON__P02538;P48668;P02538;P04259;CON__P12035;P12035	KRT6C;KRT6A;KRT6B;KRT3	Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 3	no	no	0	0	0	1	0	1					17.461	17.461	2	0.00091208	10339	DP1145_11	107.45	44.992		+	22551000	2384	6	2231	4018	5922	5922		1	9606
TAAFALPVLER	Unmodified	1186.671	0.67100829	627	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	2	0		1				20.099	20.099	2	0.010483	16426	DP1145_12	91.087	36.365			2300100	2385	627	2232	4019	5923	5923		1	9606
TAEEENPEHVEIQK	Unmodified	1651.7689	0.76894402	40	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	3	0.816		1	1	1		14.665	14.665	3	0.00016298	7864	DP1145_12	138.02	82.824			210960000	2386	40	2233	4020;4021;4022	5924;5925;5926;5927	5924		4	9606
TAGPEQGPGLGGR	Unmodified	1195.5945	0.59454889	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				14.667	14.667	2	7.2524E-05	7863	DP1145_12	136.52	101.34			37015000	2387	520	2234	4023	5928	5928		1	9606
TAGTLFGEGFR	Unmodified	1154.572	0.57202253	730	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			1			18.879	18.879	2	1.5792E-09	13911	DP1145_13	155.84	116.88			52067000	2388	730	2235	4024	5929	5929		0	9606
TALIHDGLAR	Unmodified	1065.5931	0.59309232	216	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	15.199	15.199	2	0.0053067	7210	DP1145_15	101.65	60.198			53340000	2389	216	2236	4025	5930;5931	5930		2	9606
TAQIMFQAYGDK	Oxidation (M)	1387.6442	0.6442012	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.261	17.261	2	0.0011535	9896	DP1145_11	105.4	72.398			364570000	2390	441	2237	4026	5932	5932	335	1	9606
TAVCDIPPR	Unmodified	1027.5121	0.51206481	394;137;464;113;514	P04350;A6NNZ2;P07437;P68371;Q13885;Q9BVA1;Q3ZCM7	TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8	Tubulin beta-4A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain	no	no	0	0	0	3.43	1.4	1	1	1	2	2	15.362	15.362	2	3.3519E-18	7172	DP1145_14	162.25	93.466			1104200000	2391	113;137;394;464;514	2238	4027;4028;4029;4030;4031;4032;4033	5933;5934;5935;5936;5937;5938;5939;5940;5941;5942;5943;5944;5945	5942		13	9606
TAVSGIRPENLK	Unmodified	1283.7197	0.7197494	686	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	1	3	0			2			15.038	15.038	2;3	2.2624E-07	7881	DP1145_13	141.89	98.235			163860000	2392	686	2239	4034;4035	5946;5947	5946		2	9606
TAYSGGAEDLER	Unmodified	1267.5681	0.56805936	779	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		15.565	15.565	2	0.043221	8241	DP1145_14	118.23	84.489			11486000	2393	779	2240	4036	5948	5948		0	9606
TCPVQLWVDSTPPPGTR	Unmodified	1909.9356	0.93563219	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3.5	0.5			1	1		19.68	19.68	2	0.0023064	15013	DP1145_13	132.31	83.796			94066000	2394	116	2241	4037;4038	5949;5950;5951	5949		3	9606
TCVFEKENDPSVMR	Oxidation (M)	1726.7655	0.76545532	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					15.208	15.208	3	0.0016443	6630	DP1145_11	94.781	69.817			105730000	2395	441	2242	4039	5952;5953	5952	336	2	9606
TCVFEKENDPSVMR	Unmodified	1710.7705	0.7705407	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.122	16.122	2;3	1.6986E-14	8075	DP1145_11	166.29	117.69			120820000	2396	441	2242	4040;4041	5954;5955;5956;5957;5958	5957		5	9606
TDAAVSFAK	Acetyl (Protein N-term)	950.47091	0.4709115	122	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	1	0	1					18.36	18.36	2	0.011435	11675	DP1145_11	78.516	46.582			29311000	2397	122	2243	4042	5959;5960;5961	5959		3	9606
TDCNHIFLNFVPTVIMDPSK	Oxidation (M)	2363.129	0.12898862	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					21.275	21.275	2;3	1.3423E-05	16014	DP1145_11	146.15	123.56			59185000	2398	441	2244	4043;4044	5962;5963;5964	5962	337	3	9606
TDCNHIFLNFVPTVIMDPSK	Unmodified	2347.1341	0.134074	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.094	22.094	3	0.0011491	17200	DP1145_11	103.9	73.483			17606000	2399	441	2244	4045	5965;5966	5966		2	9606
TDFGIFR	Unmodified	854.42865	0.42865276	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.217	19.217	2	0.00020397	14047	DP1145_14	124.32	97.007			2103199999.9999998	2400	710	2245	4046;4047;4048;4049	5967;5968;5969;5970;5971	5971		5	9606
TDITYPAGFMDVISIDK	Oxidation (M)	1900.9128	0.91283106	367	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	1	0	4	0				1		20.961	20.961	2	0.012361	16518	DP1145_14	103.14	77.901			14663000	2401	367	2246	4050	5972	5972	266	1	9606
TDITYPAGFMDVISIDK	Unmodified	1884.9179	0.91791644	367	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		22.304	22.304	2	0.0027223	18500	DP1145_14	115.8	93.759			6402100	2402	367	2246	4051	5973	5973		1	9606
TDKSILVSPTGPSR	Unmodified	1456.7886	0.78855725	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				15.467	15.467	3	0.027556	9093	DP1145_12	81.128	37.812			16938000	2403	480	2247	4052	5974	5974		0	9606
TDLMKAPMVIMDWEECSKMFPK	3 Oxidation (M)	2734.2185	0.21847361	541	Q6UWB4	PRSS55	Serine protease 55	yes	yes	0	3	2	4	0				1		21.242	21.242	3	0.039989	16882	DP1145_14	41.292	21.94			0	2404	541	2248	4053	5975	5975	413;414;415	1	9606
TDRGGDSIGETPTPGASK	Unmodified	1744.8228	0.8227705	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	2	0		1				14.211	14.211	3	0.0017483	7264	DP1145_12	111.09	86.177			3559600	2405	84	2249	4054	5976	5976		1	9606
TDYNASVSVPDSSGPER	Unmodified	1779.7911	0.79113602	347	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			16.677	16.677	2	0.014826	10529	DP1145_13	84.169	58.732			30069000	2406	347	2250	4055	5977	5977		1	9606
TEDFIIDTLELR	Unmodified	1463.7508	0.75077476	412	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	2	0		1				22.167	22.167	2	1.2138E-42	19400	DP1145_12	195.36	126.08			7762700	2407	412	2251	4056	5978;5979	5978		2	9606
TEEGPTLSYGR	Unmodified	1208.5673	0.56733108	274	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				16.128	16.128	2	2.623E-13	10139	DP1145_12	162.88	91.185			18116000	2408	274	2252	4057	5980;5981;5982	5980		3	9606
TEELEEESFPER	Unmodified	1493.6522	0.65218292	772	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				17.275	17.275	2	3.1721E-08	12143	DP1145_12	153.97	111.25			15971000	2409	772	2253	4058	5983	5983		1	9606
TEIIILATR	Unmodified	1028.623	0.62299547	210	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		18.56	18.56	2	0.0019628	13114	DP1145_14	109.71	66.631			155700000	2410	210	2254	4059	5984	5984		1	9606
TEILPPFFK	Unmodified	1090.6063	0.60628277	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				20.649	20.649	2	0.0011472	17259	DP1145_12	113.5	38.287			17184000	2411	84	2255	4060	5985	5985		1	9606
TEMENEFVLIK	Oxidation (M)	1367.6643	0.66426794	14	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	1	0	3	0			1			18.679	18.679	2	2.423E-09	13641	DP1145_13	152.54	46.183		+	30934000	2412	14	2256	4061	5986	5986	11	0	9606
TEPSKFPFPTK	Unmodified	1277.6656	0.66558856	749	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	1	2	0		1				16.777	16.777	3	0.020939	10754	DP1145_12	54.005	29.447			7003200	2413	749	2257	4062	5987	5987		1	9606
TETYPQGQPVK	Unmodified	1246.6194	0.61936665	579	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	4	1.55	1			1	3	21.925	21.925	2	0.016675	8489	DP1145_15	84.498	12.806			17678000000	2414	579	2258	4063;4064;4065;4066;4067	5988;5989;5990;5991;5992	5990		5	9606
TFAPEEISAMVLTK	Oxidation (M)	1551.7854	0.7854457	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	1	0	3	0			1			19.598	19.598	2	0.024936	15079	DP1145_13	90.434	67.406			43362000	2415	160	2259	4068	5993	5993	130	1	9606
TFAPEEISAMVLTK	Unmodified	1535.7905	0.79053108	160	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			20.978	20.978	2	0.02856	16873	DP1145_13	95.477	53.267			43902000	2416	160	2259	4069	5994	5994		0	9606
TFEDFVR	Unmodified	912.43413	0.43413207	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.194	18.194	1;2	1.612E-94	11465	DP1145_11	228.09	146.71			226280000	2417	441	2260	4070;4071;4072	5995;5996;5997;5998	5997		3	9606
TFEEKQGTEIDGR	Unmodified	1508.7107	0.71070086	199	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				14.568	14.568	3	0.0382	7687	DP1145_12	72.705	31.596			2946300	2418	199	2261	4073	5999	5999		0	9606
TFEINPR	Unmodified	875.45012	0.45011648	177	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	2	0		1				16.275	16.275	2	0.032401	10384	DP1145_12	88.643	38.618			8750100	2419	177	2262	4074	6000	6000		1	9606
TFNPGAGLPTDKK	Unmodified	1344.7038	0.70376498	152	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	1	4	0				1		15.704	15.704	3	0.028487	8503	DP1145_14	47.301	12.606			16979000	2420	152	2263	4075	6001	6001		1	9606
TFQVLGNLYSEGDCTYLK	Unmodified	2106.9932	0.99320665	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.982	20.982	2	3.1304E-74	16981	DP1145_13	273.07	203.22			223270000	2421	647	2264	4076;4077;4078;4079	6002;6003;6004;6005;6006;6007	6004		6	9606
TFSFAIPLIEK	Unmodified	1264.7067	0.7067251	721	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				21.74	21.74	2	0.026852	18811	DP1145_12	76.143	56.872			8363300	2422	721	2265	4080	6008;6009	6009		2	9606
TFSFAIPLIER	Unmodified	1292.7129	0.71287311	660	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	3	0			1			21.878	21.878	2	0.0086732	18366	DP1145_13	93.111	57.842			25253000	2423	660	2266	4081	6010;6011	6010		2	9606
TFTDCFNCLPIAAIVDEK	Unmodified	2112.986	0.98601278	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3	1.1	1		2	2		22.704	22.704	2;3	9.0052E-07	19038	DP1145_14	152.94	131.63			366860000	2424	252;350;351	2267	4082;4083;4084;4085;4086	6012;6013;6014;6015;6016;6017;6018;6019;6020;6021;6022	6022		11	9606
TFYNQAIMSSK	Oxidation (M)	1304.6071	0.60708741	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			16.399	16.399	2	0.00042484	9838	DP1145_13	113.44	74.691			1224400000	2425	710	2268	4087	6023	6023	514	1	9606
TFYNQAIMSSK	Unmodified	1288.6122	0.61217279	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0				1		17.459	17.459	2	0.022817	11290	DP1145_14	96.665	45.472			32514000	2426	710	2268	4088	6024	6024		1	9606
TGAAPIIDVVR	Unmodified	1110.6397	0.63970816	282	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	5	0					1	17.992	17.992	2	3.3019E-13	11465	DP1145_15	157.34	112.18			110900000	2427	282	2269	4089	6025	6025		1	9606
TGAFALPILNALLETPQR	Unmodified	1924.0782	0.078197327	692	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	3	0			2			24.469	24.469	2;3	1.7097E-10	21956	DP1145_13	178.22	156.92			6711200	2428	692	2270	4090;4091	6026;6027;6028	6027		3	9606
TGAIVDVPVGEELLGR	Unmodified	1623.8832	0.88318591	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			20.536	20.536	2	1.4554E-32	16391	DP1145_13	190.66	138.49			142950000	2429	217	2271	4092;4093	6029;6030;6031;6032	6031		4	9606
TGEEDKKINEELESQYQQSMDSK	Oxidation (M)	2731.213	0.21304842	33	O00193	SMAP	Small acidic protein	yes	yes	0	1	2	4	0				2		16.872	16.872	3;4	1.3504E-97	10482	DP1145_14	224.8	196.66			90927000	2430	33	2272	4094;4095	6033;6034	6034	26	2	9606
TGISDVFAK	Unmodified	936.49165	0.49164694	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			17.982	17.982	2	0.0087411	13244	DP1145_12	98.629	47.294			288160000	2431	199	2273	4096;4097	6035;6036	6035		2	9606
TGISEEAAIEENKR	Unmodified	1545.7635	0.76346471	529	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	1	2	0		1				15.268	15.268	3	0.012408	8686	DP1145_12	85.45	42.882			29654000	2432	529	2274	4098	6037	6037		1	9606
TGTAEMSSILEER	Oxidation (M)	1438.661	0.66097347	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	1.63	1		1		1	16.193	16.193	2	0.00076143	8281	DP1145_11	131.83	110.96			370520000	2433	217	2275	4099;4100;4101	6038;6039;6040;6041;6042	6038	175	5	9606
TGTAYTFFTPNNIK	Unmodified	1573.7777	0.77765821	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.38	19.38	2	0.00011674	14564	DP1145_13	144.55	89.466			272630000	2434	193	2276	4102	6043	6043		1	9606
TGTTGQSGAESGTTEPSAR	Unmodified	1793.8028	0.80276334	556	Q7Z5P9	MUC19	Mucin-19	yes	yes	0	0	0	3	1.41	1	1	1	1	1	19.57	19.57	2	8.1923E-11	15528	DP1145_12	160.46	88.312			5223600000	2435	556	2277	4103;4104;4105;4106;4107	6044;6045;6046;6047;6048;6049;6050	6046		7	9606
TGVHHYSGNNIELGTACGK	Unmodified	2013.9327	0.93267208	377	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	14.698	14.698	3	0.00094571	6357	DP1145_15	131.84	87.584			168610000	2436	377	2278	4108	6051	6051		1	9606
THINIVVIGHVDSGK	Unmodified	1587.8733	0.87328993	392	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2	1	1		1			16.414	16.414	3	0.0014567	10074	DP1145_13	124.5	90.53			194320000	2437	392	2279	4109;4110	6052;6053;6054	6053		3	9606
THNLEPYFESFINNLR	Unmodified	1992.9694	0.96937516	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2.17	1.46	3	1	1		1	21.898	21.898	2;3	2.4595000000000003E-56	16970	DP1145_11	167.18	119.64		+	190930000	2438	13	2280	4111;4112;4113;4114;4115;4116	6055;6056;6057;6058;6059;6060	6056		6	9606
THNLEPYFESFINNLRR	Unmodified	2149.0705	0.070486187	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	1	0	1					21.083	21.083	3	0.029586	15774	DP1145_11	99.069	56.687		+	14117000	2439	13	2281	4117	6061	6061		1	9606
THYPAQQGEYQTHQPVYHK	Unmodified	2311.077	0.077028128	106	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	3	0			1			14.082	14.082	4	0.013626	6457	DP1145_13	103.13	86.207			12584000	2440	106	2282	4118	6062	6062		1	9606
TIAFLLPMFR	Unmodified	1207.6787	0.67873621	549	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	0		1				23.138	23.138	2	0.037217	20820	DP1145_12	74.255	36.697			956760	2441	549	2283	4119	6063	6063		1	9606
TIAGIIYENYLLSR	Unmodified	1624.8825	0.88245763	2	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1	0	1					22.071	22.071	2	0.029059	17175	DP1145_11	91.03	22.478			0	2442	2	2284	4120	6064	6064		1	9606
TIAMDGTEGLVR	Unmodified	1261.6336	0.63363651	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	0			1			17.695	17.695	2	0.00035303	12102	DP1145_13	104.05	36.032			20498000	2443	131	2285	4121	6065	6065		1	9606
TIANMFGSSEKETIELSPTGRPK	Oxidation (M)	2508.253	0.25300316	724	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	2	2	0		2				17.091	17.091	3;4	0.00013241	11720	DP1145_12	118.16	83.939			25062000	2444	724	2286	4122;4123	6066;6067	6067	522	2	9606
TIAQDYGVLK	Unmodified	1106.5972	0.59717465	420	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	5	0					1	17.393	17.393	2	0.0011755	10605	DP1145_15	133.86	90.739			45460000	2445	420	2287	4124	6068	6068		0	9606
TICSHVQNMIK	Oxidation (M)	1345.6482	0.64824072	237	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	1	0	5	0					1	14.362	14.362	3	0.034434	6433	DP1145_15	76.282	36.887			29172000	2446	237	2288	4125	6069	6069	186	0	9606
TIDDLKNQILNLTTDNANILLQIDNAR	Unmodified	3051.62	0.62004194	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	0			1			23.914	23.914	3	6.1054E-08	21176	DP1145_13	90.974	58.564		+	0	2447	18	2289	4126	6070	6070		1	9606
TIEYLQPNPASR	Unmodified	1387.7096	0.70957864	659	Q99962;Q99961	SH3GL2;SH3GL1	Endophilin-A1;Endophilin-A2	yes	no	0	0	0	2.5	1.5	1			1		17.117	17.117	2	0.0043418	10673	DP1145_14	138.66	94.456			3680300	2448	659	2290	4127;4128	6071;6072	6072		2	9606
TIGGGDDSFNTFFSETGAGK	Unmodified	2006.8858	0.88576469	393;547;662	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3	1.41	1	1	1	1	1	20.732	20.732	2	1.4673E-75	16662	DP1145_13	217.2	185.54			573400000	2449	393;547;662	2291	4129;4130;4131;4132;4133	6073;6074;6075;6076;6077;6078;6079;6080	6076		8	9606
TILQGSSEGTGLSALLPQPK	Unmodified	1996.0841	0.084070566	608	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	3	0			1			20.479	20.479	2	0.017777	16271	DP1145_13	78.985	45.018			10746000	2450	608	2292	4134	6081	6081		1	9606
TILSNQTVDIPENVDITLK	Unmodified	2112.1314	0.13141469	237	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	5	0					1	20.471	20.471	2	0.017775	15249	DP1145_15	80.3	53.331			165150000	2451	237	2293	4135	6082	6082		1	9606
TINEVENQILTR	Unmodified	1428.7573	0.75725712	62	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	yes	no	0	0	0	2	0		1				18.676	18.676	2	0.00020066	13797	DP1145_12	110.54	59.749			12829000	2452	62	2294	4136	6083	6083		1	9606
TINLYPLTNYTFGTK	Unmodified	1744.9036	0.903587	64	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	4	0				1		21.246	21.246	2	0.0015269	16954	DP1145_14	122.46	74.566			7619200	2453	64	2295	4137	6084;6085	6084		2	9606
TIQFVDWCPTGFK	Unmodified	1597.7599	0.75989966	547;662	Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3.5	1.12		1	1	1	1	21.124	21.124	2	0.00045898	16892	DP1145_14	106.4	51.86			278740000	2454	547;662	2296	4138;4139;4140;4141	6086;6087;6088;6089;6090;6091	6090		5	9606
TIQGHLQSENFK	Unmodified	1400.7048	0.70482762	47	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	2	0		1				15.168	15.168	3	5.2345E-10	8649	DP1145_12	161.93	123.06			24661000	2455	47	2297	4142	6092	6092		0	9606
TIQVENSHLILTGAGALNK	Unmodified	1978.0847	0.084739268	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.26	18.26	2;3	0.00013945	11684	DP1145_11	152.94	122.06			1064399999.9999999	2456	441	2298	4143;4144	6093;6094	6094		2	9606
TITLEVEPSDTIENVK	Unmodified	1786.92	0.92002493	384	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	1.41	1	1	1	1	1	19.014	19.014	2	2.1101999999999997E-286	13654	DP1145_14	290.61	220.77			445650000	2457	384	2299	4145;4146;4147;4148;4149	6095;6096;6097;6098;6099;6100;6101	6100		7	9606
TIVQLENEIYQIK	Unmodified	1589.8665	0.86647322	90	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	4	0				1		20.761	20.761	2	0.0018353	16136	DP1145_14	120.86	66.316			7758500	2458	90	2300	4150	6102	6102		1	9606
TKDHTLVQTIAR	Unmodified	1381.7678	0.76776223	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.4	1.02	1	2	1	1		14.564	14.564	2;3	3.1057E-191	6789	DP1145_14	244.73	205.15			829560000	2459	480	2301	4151;4152;4153;4154;4155	6103;6104;6105;6106;6107;6108;6109;6110	6109		7	9606
TKIDPSALVQK	Unmodified	1198.6921	0.69213767	725	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	1	4	0				1		16.087	16.087	2	0.030951	9029	DP1145_14	104.05	51.566			0	2460	725	2302	4156	6111	6111		1	9606
TKPIVKPQTSPEYGQGINPISR	Unmodified	2409.3016	0.30160833	105	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	2	3	0			1			16.082	16.082	3	6.6789E-37	9495	DP1145_13	184.35	158.03			103230000	2461	105	2303	4157	6112;6113;6114	6113		3	9606
TLAFLIPAVELIVK	Unmodified	1525.9484	0.94835235	731	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			24.287	24.287	2	0.0035016	21742	DP1145_13	96.113	71.322			2255400	2462	731	2304	4158	6115;6116	6115		2	9606
TLATDILMGVLK	Oxidation (M)	1289.7265	0.72647426	51	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	1	0	1					22.449	22.449	2	0.020711	17714	DP1145_11	94.409	68.025			6595800	2463	51	2305	4159	6117	6117	40	1	9606
TLAYLLPAIVHINHQPYLER	Unmodified	2360.3005	0.30048612	611	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			20.649	20.649	3	0.001567	16113	DP1145_13	110.74	70.599			80492000	2464	611	2306	4160	6118	6118		1	9606
TLDPDPAIR	Unmodified	996.52401	0.52400971	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				16.117	16.117	2	0.0060796	10114	DP1145_12	101.33	68.328			21668000	2465	322	2307	4161	6119;6120	6120		2	9606
TLDQVTDMMVANSHNLIVTVK	2 Oxidation (M)	2360.1716	0.17158172	715	Q9NPB6	PARD6A	Partitioning defective 6 homolog alpha	yes	yes	0	2	0	3	0			1			21.65	21.65	3	0.035278	17749	DP1145_13	42.226	11.542			42671000	2466	715	2308	4162	6121	6121	517;518	0	9606
TLDSGTSEIVK	Unmodified	1148.5925	0.5924832	698	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	4	0				1		15.604	15.604	2	0.036013	8285	DP1145_14	107.21	48.288			20424000	2467	698	2309	4163	6122	6122		0	9606
TLFVLNVPPYCTEESLSR	Unmodified	2124.0561	0.056141256	780	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		21.345	21.345	2	0.032294	17201	DP1145_14	73.834	37.387			5888200	2468	780	2310	4164	6123	6123		1	9606
TLGECGFTSQTAR	Unmodified	1426.6511	0.65107749	497	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	5	0					1	16.181	16.181	2	0.0099301	8753	DP1145_15	84.198	57.15			28203000	2469	497	2311	4165	6124	6124		1	9606
TLGILGLGR	Unmodified	898.56	0.56000128	54	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			19.48	19.48	2	0.032529	14964	DP1145_13	77.923	28.826			68233000	2470	54	2312	4166	6125	6125		1	9606
TLLDIDNTR	Unmodified	1059.556	0.55603811	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					17.861	17.861	2	1.381E-22	10902	DP1145_11	171.73	95.256		+	295480000	2471	20	2313	4167	6126	6126		1	9606
TLLVADPR	Unmodified	883.51272	0.51271674	356	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	16.506	16.506	2	0.02673	9251	DP1145_15	91.906	10.61			101630000	2472	356	2314	4168	6127	6127		1	9606
TLMNLGGLAVAR	Oxidation (M)	1230.6754	0.67544174	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	18.092	18.092	2	0.00072296	11680	DP1145_15	131.5	100.93			135000000	2473	253	2315	4169	6128;6129	6128	191	2	9606
TLNDMRQEYEQLIAK	Unmodified	1850.9196	0.91964777	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	1	1	0	1					19.643	19.643	3	0.0055763	13753	DP1145_11	80.507	27.06		+	43184000	2474	20	2316	4170	6130	6130		1	9606
TLNDMRQEYEQLIAK	Oxidation (M)	1866.9146	0.9145624	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	3	0			1			17.878	17.878	3	0.041238	12386	DP1145_13	55.656	22.355		+	117460000	2475	20	2316	4171	6131	6131	20	1	9606
TLRDPSLPLLELQDIMTSVSGR	Oxidation (M)	2456.2945	0.29447405	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.5	0.5	1	1				21.542	21.542	3	2.0517E-06	16252	DP1145_11	144.56	104.66			79437000	2476	441	2317	4172;4173	6132;6133;6134;6135;6136	6133	313	5	9606
TLRDPSLPLLELQDIMTSVSGR	Unmodified	2440.2996	0.29955942	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					23.54	23.54	3	2.1772999999999997E-28	19169	DP1145_11	177.87	133.48			11287000	2477	441	2317	4174	6137;6138	6138		2	9606
TLSDYNIQK	Unmodified	1080.5451	0.54513908	384	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1.5	0.5	1	1				15.893	15.893	2	7.3523E-09	9708	DP1145_12	147.34	92.559			383970000	2478	384	2318	4175;4176	6139;6140;6141	6141		3	9606
TLSYLLPAIVHINHQPFLER	Unmodified	2360.3005	0.30048612	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.649	20.649	3	0.037146	16288	DP1145_13	89.913	65.368			80492000	2479	193	2319	4177	6142	6142		1	9606
TLTAVHDAILEDLVFPSEIVGK	Unmodified	2366.2733	0.2733279	349	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	22.603	22.603	3	1.4819E-13	18032	DP1145_15	160.02	115.42			54713000	2480	349	2320	4178	6143;6144;6145	6143		3	9606
TLTAVHDAILEDLVFPSEIVGKR	Unmodified	2522.3744	0.37443893	349	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					1	21.605	21.605	3	0.031559	16591	DP1145_15	81.574	55.556			9172600	2481	349	2321	4179	6146	6146		0	9606
TLTELILDAQEHVK	Unmodified	1608.8723	0.87228688	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	3	0			1			20.18	20.18	3	1.1077E-15	15771	DP1145_13	176.99	116.63			75025000	2482	189	2322	4180	6147	6147		1	9606
TLVLSNLSYSATEETLQEVFEK	Unmodified	2500.2585	0.2584657	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0			2			23.308	23.308	2;3	6.881100000000001E-64	20391	DP1145_13	246.77	207.6			40613000	2483	199	2323	4181;4182	6148;6149;6150	6149		3	9606
TLYGFGG	Unmodified	713.33844	0.33844077	370	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	19.791	19.791	1	0.00015933	14156	DP1145_15	126.25	126.25			540870000	2484	370	2324	4183	6151;6152	6152		2	9606
TMEMVKTKWDHFGSNFETLSVWITEK	2 Oxidation (M)	3175.4995	0.4994578	589	Q8NF91	SYNE1	Nesprin-1	yes	yes	0	2	2	4	0				1		23.195	23.195	3	0.04227	19697	DP1145_14	41.911	19.216			0	2485	589	2325	4184	6153	6153	438;439	1	9606
TMLELLNQLDGFDSR	Unmodified	1750.856	0.85598488	352	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	3	0			1			23.601	23.601	2	0.0011514	20785	DP1145_13	134.75	87.195			4364200	2486	352	2326	4185	6154	6154		1	9606
TNAENEFVTIK	Unmodified	1264.6299	0.62993134	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				17.268	17.268	2	3.3003E-33	9875	DP1145_11	188.91	108.16		+	353070000	2487	13	2327	4186;4187	6155;6156;6157	6156		3	9606
TNAENEFVTIKK	Unmodified	1392.7249	0.72489436	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2	0.816	2	2	2			15.569	15.569	2;3	7.3788E-102	7225	DP1145_11	238.86	150.73		+	1767099999.9999998	2488	13	2328	4188;4189;4190;4191;4192;4193	6158;6159;6160;6161;6162;6163;6164;6165;6166	6160		9	9606
TNVVTMPTAHPR	Oxidation (M)	1338.6714	0.671419	451	Q13428	TCOF1	Treacle protein	yes	yes	0	1	0	2	0		1				14.058	14.058	3	0.040113	6573	DP1145_12	53.6	38.907			610220	2489	451	2329	4194	6167	6167	346	1	9606
TPAKVEDAADSATKPENLSSK	Unmodified	2158.0754	0.075356373	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	3	0			1			14.738	14.738	3	0.042865	7558	DP1145_13	102.24	90.044			43844000	2490	278	2330	4195	6168	6168		1	9606
TPALVNAAVTYSKPR	Unmodified	1586.878	0.87804096	92	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	1	5	0					1	17.21	17.21	3	0.0016457	10270	DP1145_15	184.87	149.91			0	2491	92	2331	4196	6169	6169		1	9606
TPASSSSALSHPAKPHSVSSAGSSYK	Unmodified	2527.2303	0.23029389	717	Q9NPG3	UBN1	Ubinuclein-1	yes	yes	0	0	1	2	0		1				14.036	14.036	4	0.024112	6780	DP1145_12	46.22	28.222			6534600	2492	717	2332	4197	6170	6170		0	9606
TPCNAGTFSQPEK	Unmodified	1435.6402	0.64017845	61	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	4	0				1		14.959	14.959	2	5.730400000000001E-41	7085	DP1145_14	198.97	153.95			7898100	2493	61	2333	4198	6171	6171		0	9606
TPESKPTILVK	Unmodified	1211.7125	0.71253876	783	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	1	4	0				1		14.587	14.587	3	0.018384	6798	DP1145_14	70.412	24.503			37846000	2494	783	2334	4199	6172	6172		1	9606
TPGNRIVYLYTK	Unmodified	1423.7823	0.78234966	294	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	1	4	0				1		14.687	14.687	3	0.030814	6952	DP1145_14	60.691	22.751			8797300	2495	294	2335	4200	6173	6173		1	9606
TPIGSFLGSLSLLPATK	Unmodified	1700.9713	0.97127264	213	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	4	0				1		23.236	23.236	2	1.452E-23	19762	DP1145_14	181.76	135.87			2001300	2496	213	2336	4201	6174;6175	6174		2	9606
TPIVGQPSIPGGPVR	Unmodified	1473.8304	0.83036248	17	CON__P12763			yes	yes	0	0	0	3	0			1			17.678	17.678	2	1.1714E-05	12201	DP1145_13	148.18	104.76		+	254170000	2497	17	2337	4202	6176	6176		1	
TPKEEAQSLEDLAGFK	Unmodified	1761.8785	0.87849447	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		2				19.097	19.097	2;3	2.0651000000000003E-31	14967	DP1145_12	188.92	129.65			58827000	2498	278	2338	4203;4204	6177;6178	6177		2	9606
TPKGPSSVEDIK	Unmodified	1256.6612	0.66123147	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		14.529	14.529	3	0.0078981	6483	DP1145_14	71.933	18.81			18889000	2499	134	2339	4205	6179	6179		1	9606
TPLEQEIFNLLHK	Unmodified	1580.8562	0.85624288	673	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	3	0.816		1	1	1		21.942	21.942	3	1.4337000000000002E-122	18325	DP1145_13	219.89	171.38			46141000	2500	673	2340	4206;4207;4208	6180;6181;6182;6183	6181		4	9606
TPQQLWYTHEKK	Unmodified	1557.794	0.79397698	189	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	2	0		1				15.068	15.068	3	0.024756	8399	DP1145_12	82.705	47.628			6450200	2501	189	2341	4209	6184	6184		1	9606
TPTSSPASSPLVAK	Unmodified	1341.714	0.71399532	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.41	1	1	1	1	1	15.3	15.3	2	2.8987E-123	8755	DP1145_12	240.37	158.84			1399000000	2502	480	2342	4210;4211;4212;4213;4214	6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195;6196;6197	6188		13	9606
TPVEEVPAAIAPFQGR	Unmodified	1680.8835	0.88352026	498	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					19.343	19.343	2	0.013419	13373	DP1145_11	80.014	46.606			15026000	2503	498	2343	4215	6198	6198		1	9606
TPVPSDIDISR	Unmodified	1198.6194	0.61936665	165	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	2	0		1				17.079	17.079	2	0.035935	11726	DP1145_12	104.05	68.896			3168400	2504	165	2344	4216	6199	6199		0	9606
TQDENPVVHFFK	Unmodified	1459.7096	0.70957864	111	P02686	MBP	Myelin basic protein	yes	yes	0	0	0	2.8	1.17	1	1	1	2		18.433	18.433	2;3	3.6178E-23	12735	DP1145_14	176.6	127.54			270890000	2505	111	2345	4217;4218;4219;4220;4221	6200;6201;6202;6203;6204;6205	6203		4	9606
TQPSSGVDSAVGTLPATSPQSTSVQAK	Unmodified	2600.293	0.29295372	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		2				17.275	17.275	2;3	4.894E-63	12160	DP1145_12	195.25	165.61			70429000	2506	451	2346	4222;4223	6206;6207	6207		2	9606
TQSRPGGPPNPPGPSPK	Unmodified	1669.8536	0.85361712	104	O95785	WIZ	Protein Wiz	yes	yes	0	0	1	2	0		1				13.767	13.767	3	0.0013141	6805	DP1145_12	110.84	49.363			2500100	2507	104	2347	4224	6208;6209;6210	6210		3	9606
TQTSDPAMLPTMIGLLAEAGVR	Oxidation (M)	2287.1552	0.15520337	54	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	1	0	3	0			1			23.227	23.227	2	0.032244	20441	DP1145_13	87.138	63.31			4681300	2508	54	2348	4225	6211	6211	43	1	9606
TQTSDPAMLPTMIGLLAEAGVR	Unmodified	2271.1603	0.16028875	54	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			24.28	24.28	2	0.0038529	21706	DP1145_13	105.39	60.112			0	2509	54	2348	4226	6212	6212		1	9606
TRHDVGLPGVSR	Unmodified	1292.6949	0.69493163	396	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	1	3	0			1			14.615	14.615	3	0.039616	7222	DP1145_13	68.463	30.226			0	2510	396	2349	4227	6213	6213		1	9606
TRLEQEIATYR	Unmodified	1378.7205	0.72047768	5;16	P02533;CON__P02533;CON__Q9QWL7;CON__Q04695;CON__Q6IFX2;Q04695;P19012;CON__A2A4G1;CON__P19012;CON__Q3ZAW8;CON__Q9Z2K1;CON__Q61782;CON__Q9D312;CON__P35900;P35900;CON__P08779;P08779	KRT14;KRT17;KRT15;KRT20;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 16	no	no	0	0	1	1	0	1					16.94	16.94	3	0.013916	9333	DP1145_11	107.97	82.249		+	12759000	2511	5;16	2350	4228	6214	6214		0	9606
TSAAQAIHPGCGFLSENMEFAELCK	Unmodified	2767.2404	0.24040634	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.081	20.081	3	0.00060904	15713	DP1145_13	53.998	34.62			90011000	2512	647	2351	4229	6215	6215		1	9606
TSAAQAIHPGCGFLSENMEFAELCK	Oxidation (M)	2783.2353	0.23532096	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	4	0				1		19.461	19.461	3	7.6651E-06	14232	DP1145_14	118.24	98.567			27421000	2513	647	2351	4230	6216;6217	6216	485	2	9606
TSAAQAIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIR	Oxidation (M)	4359.1126	0.11263364	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0			1			21.478	21.478	4	0.000188	17730	DP1145_13	58.122	37.377			40043000	2514	647	2352	4231	6218	6218	485	0	9606
TSASIILR	Unmodified	859.51272	0.51271674	194	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			16.294	16.294	2	0.017729	9852	DP1145_13	98.418	40.607			34228000	2515	194	2353	4232	6219	6219		1	9606
TSATWLALSR	Unmodified	1104.5928	0.59275797	119	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	0	1					18.837	18.837	2	6.2257E-10	12411	DP1145_11	163.32	78.576			0	2516	119	2354	4233	6220	6220		1	9606
TSFFQALGITTK	Unmodified	1312.7027	0.70270235	127	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		21.445	21.445	2	5.4265E-32	17176	DP1145_14	184.71	130.93			62703000	2517	127	2355	4234	6221;6222;6223	6222		3	9606
TSGGDHAPDSPSGENSPAPQGR	Unmodified	2119.9155	0.91550169	640	Q96NY9	MUS81	Crossover junction endonuclease MUS81	yes	yes	0	0	0	3	0			1			13.488	13.488	3	2.6914E-50	5670	DP1145_13	158.5	131.47			1510600	2518	640	2356	4235	6224;6225;6226	6226		3	9606
TSIAIDTIINQK	Unmodified	1315.7347	0.73473076	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.879	18.879	2	2.2717999999999998E-67	13841	DP1145_13	244.61	193.55			181240000	2519	217	2357	4236	6227	6227		0	9606
TSIPTINMENK	Oxidation (M)	1262.6177	0.61765209	220	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	1	0	5	0					1	16.061	16.061	2	0.010716	8469	DP1145_15	102.51	56.088			51633000	2520	220	2358	4237	6228	6228	177	1	9606
TSPPDSSVIVTLLDQAAK	Unmodified	1840.9782	0.97820851	625	Q96EB6	SIRT1	NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment	yes	yes	0	0	0	2	0		1				22.382	22.382	2	0.012838	19747	DP1145_12	101.43	43.259			2611000	2521	625	2359	4238	6229	6229		1	9606
TSQNSELNNMQDLVEDYKK	Oxidation (M)	2271.0325	0.03250528	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	1	1.5	0.5	1	1				16.488	16.488	3	2.6676E-17	8688	DP1145_11	171.87	138.52		+	92250000	2522	21	2360	4239;4240	6230;6231	6230	21	2	9606
TSSLDPNDQVAMGR	Oxidation (M)	1505.678	0.67802052	734	Q9NY61	AATF	Protein AATF	yes	yes	0	1	0	3	0			1			15.337	15.337	2	0.014217	8230	DP1145_13	97.163	71.224			67368000	2523	734	2361	4241	6232	6232	526	1	9606
TSTTSSMVASAEQPR	Oxidation (M)	1567.7148	0.71479996	265	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	4	0				1		14.119	14.119	2	0.00073021	6061	DP1145_14	146.16	115.37			10252000	2524	265	2362	4242	6233;6234	6234	201	2	9606
TSTTSSMVASAEQPR	Unmodified	1551.7199	0.71988533	265	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		15.704	15.704	2	1.7688E-55	8513	DP1145_14	263.3	220.5			836040000	2525	265	2362	4243	6235;6236	6235		2	9606
TTDGYLLR	Unmodified	937.4869	0.48689592	339	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		16.759	16.759	2	0.0061274	10277	DP1145_14	106.42	56.391			454540000	2526	339	2363	4244	6237;6238	6238		2	9606
TTEEQVQASTPCPR	Unmodified	1602.7308	0.73078437	468	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2	0		1				14.967	14.967	2	0.016103	8197	DP1145_12	76.326	34.325			3360100	2527	468	2364	4245	6239	6239		1	9606
TTEPGVTGLLLAVEGPAAK	Unmodified	1823.004	0.0040293305	481	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					21.532	21.532	2	0.015617	16376	DP1145_11	123.68	81.987			0	2528	481	2365	4246	6240	6240		1	9606
TTGFGMIYDSLDYAK	Oxidation (M)	1696.7654	0.76543854	374	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	5	0					1	20.173	20.173	2	0.028191	14844	DP1145_15	89.301	50.547			46210000	2529	374	2366	4247	6241	6241	274	1	9606
TTGFGMIYDSLDYAK	Unmodified	1680.7705	0.77052392	374	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	5	0					1	21.22	21.22	2	0.0015443	16172	DP1145_15	125.54	101.79			62186000	2530	374	2366	4248	6242	6242		1	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	Oxidation (M)	3198.6019	0.60194904	335;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				2		19.66	19.66	3;4	9.514E-09	14794	DP1145_14	100.7	77.647			140340000	2531	335;389	2367	4249;4250	6243;6244	6243	251	2	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	Unmodified	3182.607	0.60703441	335;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4	0				1		20.162	20.162	4	1.3368E-05	15408	DP1145_14	66.012	45.736			25723000	2532	335;389	2367	4251	6245;6246	6245		2	9606
TTHFVEGGDAGNREDQINR	Unmodified	2114.973	0.97295699	195	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	3.5	1.5	1			2	1	14.563	14.563	3;4	0.0014412	5766	DP1145_11	100.23	71.358			280910000	2533	195	2368	4252;4253;4254;4255	6247;6248;6249;6250;6251;6252	6247		5	9606
TTIFSPEGR	Unmodified	1006.5084	0.50835964	219	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	4	0				1		16.759	16.759	2	1.2193E-05	10089	DP1145_14	127.02	82.3			22484000	2534	219	2369	4256	6253	6253		1	9606
TTNFAGILSQGLR	Unmodified	1376.7412	0.74121312	153	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	0		1				20.31	20.31	2	0.0061581	16785	DP1145_12	90.05	44.889			5741300	2535	153	2370	4257	6254	6254		1	9606
TTPNSGDVQVTEDAVR	Unmodified	1687.8013	0.80130678	244	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	3	0			1			16.213	16.213	2	4.7652E-06	9828	DP1145_13	152.38	102.88			157660000	2536	244	2371	4258	6255;6256	6256		2	9606
TTPSVVAFTADGER	Unmodified	1449.71	0.70997257	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.878	17.878	2	0.043172	12521	DP1145_13	79.82	58.448			234330000	2537	255	2372	4259	6257	6257		1	9606
TTPSYVAFTDTER	Unmodified	1486.694	0.69398816	156;161;187	P0DMV9;P0DMV8;P11142;P54652;P17066;P48741	HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	3	1.41	1	1	1	1	1	17.918	17.918	2	4.8276E-06	12438	DP1145_13	144.55	109.78			1835499999.9999998	2538	156;161;187	2373	4260;4261;4262;4263;4264	6258;6259;6260;6261;6262;6263;6264;6265	6261		8	9606
TTQPSINESESDPFEVVRDDFK	Unmodified	2539.1714	0.1714416	548	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		1				20.179	20.179	3	0.0026352	16641	DP1145_12	90.017	69.153			10152000	2539	548	2374	4265	6266	6266		1	9606
TTQQIDLQGPGPWGFR	Acetyl (Protein N-term)	1841.906	0.90604662	31	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	1	0	0	4	0				1		22.471	22.471	2	2.8686E-06	18657	DP1145_14	181.31	94.968			5043400	2540	31	2375	4266	6267;6268	6267		2	9606
TTQVPQFILDDFIQNDR	Unmodified	2049.0167	0.016719282	424	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.33	0.471	2	1				22.491	22.491	2	1.2084E-32	17780	DP1145_11	212.1	157			5944800	2541	424	2376	4267;4268;4269	6269;6270;6271	6269		3	9606
TTVEYLIK	Unmodified	965.54335	0.54334816	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.361	17.361	2	0.026991	10243	DP1145_11	91.626	54.606			512320000	2542	441	2377	4270	6272;6273	6273		2	9606
TTYLVLDEADRMLDMGFEPQIR	2 Oxidation (M)	2644.2513	0.2512886	193	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	1	3	0			1			20.626	20.626	3	0.0046349	16533	DP1145_13	71.376	49.253			36437000	2543	193	2378	4271	6274	6274	160;161	1	9606
TVAIHSDVDASSVHVK	Unmodified	1663.8529	0.85294842	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.97	14.97	3	0.00073566	7602	DP1145_13	119	92.458			2322300000	2544	123	2379	4272;4273;4274;4275;4276	6275;6276;6277;6278;6279;6280;6281;6282	6278		8	9606
TVAIYSEQDTGQMHR	Oxidation (M)	1750.7944	0.79444726	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	1.12	1	1	1	1		14.864	14.864	3	0.0088494	6564	DP1145_11	73.415	55.926			1009999999.9999999	2545	164	2380	4277;4278;4279;4280	6283;6284;6285;6286;6287	6284	148	5	9606
TVAIYSEQDTGQMHR	Unmodified	1734.7995	0.79953264	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				15.672	15.672	3	2.3304E-08	9438	DP1145_12	159.66	118.08			245180000	2546	164	2380	4281;4282	6288;6289	6289		1	9606
TVANLLSGK	Unmodified	901.52328	0.52328142	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				16.976	16.976	2	5.5503E-09	11411	DP1145_12	141.52	42.891			233440000	2547	451	2381	4283	6290	6290		1	9606
TVELSIPADPANLDSEAK	Unmodified	1868.9367	0.93673763	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				19.46	19.46	2	1.4884E-34	13352	DP1145_11	189.99	121.86			599790000	2548	441	2382	4284;4285	6291;6292;6293	6291		3	9606
TVFAEHISDECK	Unmodified	1434.6449	0.64492948	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	0	2					15.594	15.594	2;3	2.9985000000000003E-84	7318	DP1145_11	219.72	158.16			58473000	2549	257	2383	4286;4287	6294;6295;6296	6294		2	9606
TVGALQVLGTEAQSSLLK	Unmodified	1814.0149	0.014928368	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.939	20.939	2	1.7449E-262	15545	DP1145_11	286.26	190.15			22772000	2550	400	2384	4288	6297;6298	6297		2	9606
TVLIMELINNVAK	Oxidation (M)	1472.8273	0.82725094	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	4	0				1		21.641	21.641	2	0.0081982	17387	DP1145_14	99.973	49.779			6315900	2551	131	2385	4289	6299;6300	6299	95	2	9606
TVLIMELINNVAK	Unmodified	1456.8323	0.83233632	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	4	0				1		23.07	23.07	2	0.0071784	19537	DP1145_14	88.134	29.887			1280900	2552	131	2385	4290	6301	6301		1	9606
TVLWNPEDLIPLPIPK	Unmodified	1844.0448	0.044771933	764	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	3	0			1			23.792	23.792	2	0.0016707	21017	DP1145_13	117.95	91.237			3658600	2553	764	2386	4291	6302;6303;6304	6303		3	9606
TVNATGSSAAPGSSDKPSDPR	Unmodified	2000.9399	0.93992552	764	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	1	3	0.816		1	1	1		13.689	13.689	3	0.0010579	6039	DP1145_13	114.53	83.652			10606000	2554	764	2387	4292;4293;4294	6305;6306;6307;6308;6309	6307		5	9606
TVSALGLDPSGAR	Unmodified	1242.6568	0.65681479	732	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	3	0			1			17.378	17.378	2	0.020625	11630	DP1145_13	73.841	30.399			27389000	2555	732	2388	4295	6310	6310		1	9606
TVSGTCGPGQPASSSGGPGRPISGSVSSAR	Unmodified	2757.31	0.31001754	533	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	1	3	0			1			15.038	15.038	3	0.00071665	8050	DP1145_13	88.244	66.68			29484000	2556	533	2389	4296	6311	6311		1	9606
TVSLGAGAK	Unmodified	802.45487	0.45486751	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0				1		13.683	13.683	2	0.0021219	5648	DP1145_14	109.01	29.559			1991700	2557	134	2390	4297	6312	6312		1	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	Oxidation (M)	2944.4488	0.44880244	134	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	4.12	0.781			2	3	3	20.181	20.181	2;3;4	1.7579E-49	15494	DP1145_14	189.84	149.04			3654799999.9999995	2558	134	2391	4298;4299;4300;4301;4302;4303;4304;4305	6313;6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335	6329	98	23	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	Unmodified	2928.4539	0.45388781	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0.707			1	2	1	20.642	20.642	3;4	9.1923E-51	15389	DP1145_15	189.02	165.9			695950000	2559	134	2391	4306;4307;4308;4309	6336;6337;6338;6339;6340;6341;6342;6343;6344;6345	6344		10	9606
TVSLLDENNVSSYLSK	Unmodified	1767.8891	0.88905915	400	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.037	20.037	2	6.8031E-14	14180	DP1145_11	168.76	105.44			9783000	2560	400	2392	4310	6346	6346		0	9606
TVSNSVPGRPVSSLGPGQTVSSSGPTIKPK	Unmodified	2920.5618	0.56179878	533	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	2	2.33	0.471		2	1			16.088	16.088	3;4	4.044E-07	9524	DP1145_13	97.304	71.065			124740000	2561	533	2393	4311;4312;4313	6347;6348;6349;6350;6351;6352;6353	6352		7	9606
TVSPDRLELEAAQK	Unmodified	1555.8206	0.82058566	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	2	0		1				16.179	16.179	3	0.010083	10247	DP1145_12	95.273	58.981			27200000	2562	484	2394	4314	6354	6354		1	9606
TVTAMDVVYALK	Oxidation (M)	1325.6901	0.69008876	370	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	4.5	0.5				1	1	19.193	19.193	2	0.00099862	13211	DP1145_15	108.43	53.063			373110000	2563	370	2395	4315;4316	6355;6356;6357	6356	269	2	9606
TVTAMDVVYALKR	Oxidation (M)	1481.7912	0.79119978	370	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	18.284	18.284	2;3	6.0673E-05	11919	DP1145_15	134.75	103.9			356970000	2564	370	2396	4317;4318	6358;6359	6358	269	2	9606
TVTAMDVVYALKR	Unmodified	1465.7963	0.79628516	370	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.49	19.49	3	0.00085715	13803	DP1145_15	124.6	84.445			208540000	2565	370	2396	4319	6360;6361	6360		2	9606
TVTNAVVTVPAYFNDSQR	Unmodified	1980.9905	0.99050453	161	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			19.381	19.381	2;3	2.0154E-110	14681	DP1145_13	289.86	202.65			544460000	2566	161	2397	4320;4321	6362;6363	6362		2	9606
TVVDSEGRTETTVTR	Unmodified	1649.822	0.82204222	32	O00165	HAX1	HCLS1-associated protein X-1	yes	yes	0	0	1	4	0				1		14.186	14.186	3	0.026408	6214	DP1145_14	96.135	55.255			3153200	2567	32	2398	4322	6364	6364		1	9606
TYNPFYAFLASK	Unmodified	1420.7027	0.70270235	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2.75	0.829		2	1	1		22.204	22.204	1;2	2.0919E-145	19508	DP1145_12	253.76	187.57			273300000	2568	520	2399	4323;4324;4325;4326	6365;6366;6367;6368;6369;6370	6366		6	9606
TYQAIKDFNR	Unmodified	1254.6357	0.63568542	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	1.41	2			1		15.597	15.597	2;3	2.1619E-12	7204	DP1145_11	148.69	115.63			133670000	2569	441	2400	4327;4328;4329	6371;6372;6373	6371		3	9606
TYQGSYGFR	Unmodified	1077.488	0.48795855	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			16.294	16.294	2	0.024987	9998	DP1145_13	82.75	50.99			104730000	2570	116	2401	4330	6374	6374		1	9606
TYSYLTPDLWK	Unmodified	1385.6867	0.68671794	182	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		20.561	20.561	2	0.00034464	15926	DP1145_14	123.35	93.688			101660000	2571	182	2402	4331	6375;6376;6377	6376		3	9606
TYTDELTPIESAVSVFK	Unmodified	1898.9513	0.95132506	82	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	4	0				1		22.36	22.36	2	1.2050999999999998E-87	18540	DP1145_14	220.37	155.09			8237500	2572	82	2403	4332	6378;6379	6378		2	9606
VAALQNLVK	Unmodified	954.58622	0.58621603	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				17.215	17.215	2	0.0002851	11898	DP1145_12	134.66	48.191			12122000	2573	484	2404	4333	6380	6380		0	9606
VAASLHNTPMGAR	Unmodified	1323.6718	0.67175335	760	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		14.434	14.434	3	0.0011471	6477	DP1145_14	85.522	47.805			1553200	2574	760	2405	4334	6381	6381		1	9606
VADEMDVMLGQEVGYSIR	2 Oxidation (M)	2042.9289	0.92889183	51	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	2	0	5	0					1	17.784	17.784	2	0.029851	11131	DP1145_15	75.788	25.305			0	2575	51	2406	4335	6382	6382	41;42	1	9606
VAEDEAEAAAAAK	Unmodified	1244.5885	0.58846046	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2.5	0.5		1	1			14.803	14.803	2	1.437E-31	7529	DP1145_13	185.6	143.2			30538000	2576	142	2407	4336;4337	6383;6384;6385	6384		2	9606
VAEIPFNSTNK	Unmodified	1218.6245	0.62445203	173	P13637;P50993;Q13733;P54707	ATP1A3;ATP1A2;ATP1A4;ATP12A	Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2	yes	no	0	0	0	1.5	0.5	1	1				16.673	16.673	2	0.00016248	8911	DP1145_11	114.86	52.658			110800000	2577	173	2408	4338;4339	6386;6387	6386		2	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	Oxidation (M)	2918.2988	0.29884374	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.8	0.748		2	2	1		14.685	14.685	3;4	3.4838E-08	7898	DP1145_12	95.052	75.654			406650000	2578	480	2409	4340;4341;4342;4343;4344	6388;6389;6390;6391;6392;6393;6394	6389	367	7	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	Unmodified	2902.3039	0.30392911	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			15.153	15.153	4	3.4923E-06	8535	DP1145_12	77.894	59.397			409770000	2579	480	2409	4345;4346	6395;6396;6397	6395		3	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	Oxidation (M)	3074.4	0.39995476	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2.8	0.748		2	2	1		14.259	14.259	3;4	1.1018E-06	6718	DP1145_13	73.994	56.522			554210000	2580	480	2410	4347;4348;4349;4350;4351	6398;6399;6400;6401;6402;6403;6404;6405	6402	367	8	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	Unmodified	3058.405	0.40504014	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.5		1	1			14.653	14.653	4	1.8822E-06	7987	DP1145_12	70.316	58.255			305440000	2581	480	2410	4352;4353	6406;6407;6408;6409	6407		4	9606
VAFDPEQKPLHGVLK	Unmodified	1676.925	0.92499115	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.17	1.07		2	2	1	1	16.644	16.644	2;3;4	0.00041829	10336	DP1145_13	124.48	68.346			2068699999.9999998	2582	480	2411	4354;4355;4356;4357;4358;4359	6410;6411;6412;6413;6414;6415;6416;6417	6412		8	9606
VAGTWYSLAMAASDISLLDAQSAPLR	Oxidation (M)	2722.3636	0.36361624	11	CON__P02754			yes	yes	0	1	0	5	0					1	23.935	23.935	3	3.7642E-18	19953	DP1145_15	162.82	123.14		+	5721000	2583	11	2412	4360	6418;6419	6418	4	2	
VALTGLTVAEYFR	Unmodified	1438.782	0.78201531	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	2	0		1				21.349	21.349	2	1.8059E-11	18258	DP1145_12	164.97	97.858			2239600	2584	131	2413	4361	6420;6421	6420		2	9606
VALVYGQMNEPPGAR	Oxidation (M)	1616.7981	0.79807608	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	1	0	1					16.767	16.767	2	0.024579	9210	DP1145_11	92.247	57.554			18112000	2585	131	2414	4362	6422;6423	6422	96	2	9606
VAPEEHPVLLTEAPLNPK	Unmodified	1953.0571	0.057127534	335;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	3.33	0.943		1		2		17.765	17.765	2;3	0.0011643	11765	DP1145_14	103.67	30.416			579530000	2586	335;389	2415	4363;4364;4365	6424;6425;6426;6427	6425		4	9606
VAPPGLTQIPQIQK	Unmodified	1488.8664	0.86641364	120	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	4	0				1		18.56	18.56	2	0.028493	12982	DP1145_14	69.276	33.332			25929000	2587	120	2416	4366	6428	6428		1	9606
VASGCLDINSSVK	Unmodified	1348.6657	0.66566492	124	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	16.292	16.292	2	1.3393000000000002E-122	9833	DP1145_13	242.97	179.43			1785299999.9999998	2588	124	2417	4367;4368;4369;4370	6429;6430;6431;6432;6433	6430		4	9606
VASIETGLAAAAAK	Unmodified	1271.7085	0.70851601	76	Q9UPP1;O75151	PHF8;PHF2	Histone lysine demethylase PHF8;Lysine-specific demethylase PHF2	yes	no	0	0	0	3	0			1			17.578	17.578	2	2.3511E-08	11782	DP1145_13	139.15	73.996			13570000	2589	76	2418	4371	6434	6434		0	9606
VASIFDFKACHDQETCSFDGVYQPK	Unmodified	2948.3109	0.31092875	78	O75355	ENTPD3	Ectonucleoside triphosphate diphosphohydrolase 3	yes	yes	0	0	1	4	0				1		14.349	14.349	4	0.017028	6501	DP1145_14	45.992	27.994			2386400	2590	78	2419	4372	6435	6435		1	9606
VASLEESEGNKQDLK	Unmodified	1645.8159	0.81589421	423	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			14.438	14.438	3	0.041522	7116	DP1145_13	63.181	18.755			75900000	2591	423	2420	4373	6436	6436		1	9606
VATVSLPR	Unmodified	841.50215	0.50215205	4	CON__P00761			yes	yes	0	0	0	3.27	1.42	2	1	3	2	3	20.754	20.754	1;2	1.4422E-12	9861	DP1145_12	147.69	61.181		+	284860000000	2592	4	2421	4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384	6437;6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453;6454;6455;6456;6457;6458;6459;6460;6461;6462;6463;6464;6465;6466;6467;6468;6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504	6457		67	
VAVCDIPPR	Unmodified	1025.5328	0.53280025	454;669	Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB3;TUBB1;TUBB6	Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	0	3	2	1				1	15.52	15.52	2	0.01085	7766	DP1145_15	96.492	67.342			15149000	2593	454;669	2422	4385;4386	6505;6506	6506		2	9606
VAVEEVDEEGKFVR	Unmodified	1604.8046	0.80460124	110	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	3	0			1			16.577	16.577	3	0.0088511	10319	DP1145_13	96.82	67.517			22639000	2594	110	2423	4387	6507	6507		0	9606
VAYVSFGPHAGK	Unmodified	1231.635	0.63495714	306	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	4	0				2		16.023	16.023	2;3	0.0070184	8956	DP1145_14	91.265	51.207			482850000	2595	306	2424	4388;4389	6508;6509;6510	6510		3	9606
VCEEIAIIPSKK	Unmodified	1385.7588	0.75883702	146	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	1	5	0					1	16.284	16.284	3	0.00016125	8839	DP1145_15	84.892	32.167			43886000	2596	146	2425	4390	6511	6511		1	9606
VCGSNLLSICK	Unmodified	1249.6159	0.61587795	333	P60201	PLP1	Myelin proteolipid protein	yes	yes	0	0	0	1	0	1					17.761	17.761	2	0.00039357	10914	DP1145_11	119.75	57.088			27468000	2597	333	2426	4391	6512	6512		1	9606
VCTLAIIDPGDSDIIR	Unmodified	1756.9029	0.90293508	377	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	20.571	20.571	2	0.0025556	15394	DP1145_15	103.75	58.494			72340000	2598	377	2427	4392	6513	6513		1	9606
VDDEPMDVDKGPGSTK	Oxidation (M)	1704.7512	0.75124504	443	Q13123	IK	Protein Red	yes	yes	0	1	1	3.5	0.5			1	1		14.011	14.011	3	3.1171E-10	6356	DP1145_13	161.49	129.22			83784000	2599	443	2428	4393;4394	6514;6515;6516	6514	341	3	9606
VDDEPMDVDKGPGSTK	Unmodified	1688.7563	0.75633042	443	Q13123	IK	Protein Red	yes	yes	0	0	1	3	0			1			15.038	15.038	3	0.010033	7895	DP1145_13	139.64	100.57			58317000	2600	443	2428	4395	6517	6517		0	9606
VDFPQDQLTALTGR	Unmodified	1559.7944	0.79437091	262	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	1	0	1					19.936	19.936	2	0.0096426	14524	DP1145_11	83.081	24.489			3478500	2601	262	2429	4396	6518	6518		1	9606
VDIEGHQLQVR	Unmodified	1292.6837	0.68369824	798				yes	yes	0	0	0	1	0	1					16.137	16.137	3	0.016547	8035	DP1145_11	56.043	8.1991	+		47169000	2602	798	2430	4397	6519;6520	6520		2	9606
VDKAAAAAAALQAK	Unmodified	1297.7354	0.73539946	251	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			15.238	15.238	3	0.0079753	8172	DP1145_13	76.311	28.882			7982800	2603	251	2431	4398	6521	6521		1	9606
VDLLNQEIEFLK	Unmodified	1459.7922	0.79224564	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.33	1.25	1	1		1		21.73	21.73	2	8.1523E-43	18810	DP1145_12	197.21	134.39		+	98533000	2604	21	2432	4399;4400;4401	6522;6523;6524;6525;6526	6524		5	9606
VDMESFANDWLITK	Oxidation (M)	1683.7814	0.78142296	795				yes	yes	0	1	0	2	0		1				17.576	17.576	2	0.019813	12602	DP1145_12	93.442	53.569	+		144440000	2605	795	2433	4402	6527	6527	556	1	9606
VDMKEEPLAVSK	Oxidation (M)	1360.6908	0.69081704	278	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2.33	0.471		2	1			14.357	14.357	2;3	1.9543E-07	6855	DP1145_13	147.24	110.8			71160000	2606	278	2434	4403;4404;4405	6528;6529;6530;6531	6531	223	4	9606
VDNDENEHQLSLR	Unmodified	1567.7227	0.72266253	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4	0.707			2	4	2	17.933	17.933	2;3	0	6915	DP1145_15	317.44	236.98			42021000000	2607	134	2435	4406;4407;4408;4409;4410;4411;4412;4413	6532;6533;6534;6535;6536;6537;6538;6539;6540;6541;6542;6543;6544;6545	6544		13	9606
VDNEFLNMLLDK	Oxidation (M)	1465.7123	0.71228076	571	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	1	0	2	0		1				21.654	21.654	2	0.0032017	18504	DP1145_12	125.72	73.231			2859300	2608	571	2436	4414	6546	6546	430	1	9606
VDNSSLTGESEPQTR	Unmodified	1618.7435	0.74345755	119;173;200	P05023;P13637;P50993;P20648	ATP1A1;ATP1A3;ATP1A2;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1	no	no	0	0	0	2.75	1.48	1	1	1		1	15.053	15.053	2	6.2211E-124	8469	DP1145_12	241.35	181.19			110900000	2609	119;173;200	2437	4415;4416;4417;4418	6547;6548;6549;6550;6551;6552;6553;6554;6555;6556	6550		10	9606
VDPEIQNVK	Unmodified	1040.5502	0.55022446	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	1	0	1					15.108	15.108	2	0.01159	6695	DP1145_11	95.741	45.615		+	16679000	2610	21	2438	4419	6557	6557		1	9606
VDPVYIHLAER	Unmodified	1310.6983	0.69828568	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					17.461	17.461	2;3	0.0028155	10407	DP1145_11	110.84	83.41			36992000	2611	441	2439	4420;4421	6558;6559	6559		2	9606
VDSGIQPGSDISIYYDPMISK	Unmodified	2284.0933	0.093314623	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.978	20.978	2	0.0018983	17013	DP1145_13	140.03	106.06			201600000	2612	123	2440	4422	6560	6560		1	9606
VDWQENDFSK	Unmodified	1266.5517	0.55168102	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.762	17.762	2	6.451599999999999E-22	10752	DP1145_11	172.25	129.38			775280000	2613	441	2441	4423	6561;6562;6563;6564	6561		4	9606
VDWQENDFSKR	Unmodified	1422.6528	0.65279205	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	0		1				16.439	16.439	3	0.031514	10832	DP1145_12	89.805	56.263			15554000	2614	441	2442	4424	6565	6565		0	9606
VEDAADSATKPENLSSK	Unmodified	1760.8428	0.84283724	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3.33	0.471			2	1		14.262	14.262	2;3	0.002557	6830	DP1145_13	147.83	99.204			51237000	2615	278	2443	4425;4426;4427	6566;6567;6568;6569	6568		4	9606
VEEQEPELTSTPNFVVEVIK	Unmodified	2286.1631	0.16310875	422	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				2		21.146	21.146	2;3	0.00013589	16856	DP1145_14	173.06	110.37			241670000	2616	422	2444	4428;4429	6570;6571;6572	6571		3	9606
VEGRPGASLPPLDLQALEK	Unmodified	1989.0895	0.089490294	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.5	0.957	1	2	2	1		19.342	19.342	2;3	0.001205	15426	DP1145_12	143.64	108.74			1120600000	2617	164	2445	4430;4431;4432;4433;4434;4435	6573;6574;6575;6576;6577;6578;6579;6580;6581;6582	6578		10	9606
VEGTEPTTAFNLFVGNLNFNK	Unmodified	2311.1485	0.14846174	199	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.75	0.829		2	1	1		22.852	22.852	2;3	2.5134E-160	20346	DP1145_12	248.67	217.84			68589000	2618	199	2446	4436;4437;4438;4439	6583;6584;6585;6586;6587;6588;6589;6590;6591;6592;6593;6594	6583		12	9606
VEILANDQGNR	Unmodified	1227.6208	0.62076364	187	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	3.5	1.12		1	1	1	1	15.278	15.278	2	2.6329E-07	8304	DP1145_13	166.09	0			90952000	2619	187	2447	4440;4441;4442;4443	6595;6596;6597;6598	6596		4	9606
VEIMPPPPKPK	Oxidation (M)	1247.6948	0.6947802	162	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	1	1	3	0			1			14.27	14.27	3	0.039806	6732	DP1145_13	65.627	27.323			0	2620	162	2448	4444	6599	6599	137	1	9606
VEITPESILSALSK	Unmodified	1485.829	0.82902508	530	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	2.5	0.5		1	1			23.101	23.101	2	0.00097912	20730	DP1145_12	127.87	72.301			5403700	2621	530	2449	4445;4446	6600;6601;6602	6601		2	9606
VELVPPTPAEIPR	Unmodified	1416.7977	0.79766537	92	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	5	0					1	18.992	18.992	2	0.0078868	13033	DP1145_15	77.744	32.722			55560000	2622	92	2450	4447	6603	6603		1	9606
VEPVGDVVSTR	Unmodified	1156.6088	0.60880197	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.013	16.013	2	0.0059886	9929	DP1145_12	115.78	70.101			0	2623	278	2451	4448	6604	6604		1	9606
VEPVGDVVSTRDPVK	Unmodified	1595.8519	0.85188578	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.07	16.07	3	0.0043328	10011	DP1145_12	101.72	70.994			55401000	2624	278	2452	4449	6605;6606;6607	6607		3	9606
VETGVLKPGMVVTFAPVNVTTEVK	Oxidation (M)	2530.3717	0.37166174	392	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	2.67	1.25	1		1	1		19.359	19.359	3	1.469E-43	14211	DP1145_14	185.34	149.67			379120000	2625	392	2453	4450;4451;4452	6608;6609;6610;6611	6611	287	4	9606
VETGVLKPGMVVTFAPVNVTTEVK	Unmodified	2514.3767	0.37674711	392	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	1	0	1					19.936	19.936	3	0.0014805	14178	DP1145_11	72.082	51.827			22575000	2626	392	2453	4453	6612	6612		1	9606
VEVGTEVTDYR	Unmodified	1266.6092	0.6091959	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.767	16.767	2	3.3953E-07	9222	DP1145_11	139.98	97.381			1003699999.9999999	2627	441	2454	4454	6613	6613		1	9606
VEVTEFEDIK	Unmodified	1207.5972	0.59723423	155	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				1		18.36	18.36	2	0.0027426	12802	DP1145_14	105.52	32.261			166190000	2628	155	2455	4455	6614;6615	6615		2	9606
VEWTSDTVDNEHMGR	Unmodified	1774.7581	0.75806175	75	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	0	0	5	0					1	16.529	16.529	3	0.0044358	9195	DP1145_15	101.45	86.108			0	2629	75	2456	4456	6616	6616		1	9606
VEYLDDRNTFR	Unmodified	1426.6841	0.68409218	116	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	1	3	0			1			16.677	16.677	2	0.002843	10354	DP1145_13	120.45	80.906			36038000	2630	116	2457	4457	6617	6617		1	9606
VEYTLGEESEAPGQR	Unmodified	1663.7689	0.76894402	419	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2	0		1				16.801	16.801	2	1.2837E-31	11261	DP1145_12	183.99	141.18			20341000	2631	419	2458	4458	6618;6619	6618		2	9606
VFCVEEEDSESSLQK	Unmodified	1784.7775	0.77745979	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			17.377	17.377	2	6.1067E-169	12223	DP1145_12	254.53	202.53			635170000	2632	480	2459	4459;4460	6620;6621	6620		2	9606
VFCVEEEDSESSLQKR	Unmodified	1940.8786	0.87857082	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.5		1	1			16.43	16.43	3	2.9689E-88	10539	DP1145_12	226.23	173.33			474410000	2633	480	2460	4461;4462	6622;6623;6624;6625;6626;6627	6622		6	9606
VFDGIPPPYDK	Unmodified	1246.6234	0.6233894	260	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	4	0				1		18.185	18.185	2	0.031719	12552	DP1145_14	89.047	56.829			16806000	2634	260	2461	4463	6628	6628		1	9606
VFDYSEYWEGAR	Unmodified	1520.6572	0.65720872	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	1.25	1	1		1		20.255	20.255	2	2.1884999999999998E-32	16592	DP1145_12	189.18	157.54			547710000	2635	164	2462	4464;4465;4466	6629;6630;6631;6632;6633	6630		4	9606
VFEISPFEPWITR	Unmodified	1619.8348	0.83477916	506	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	4	0				1		22.772	22.772	2	6.3167E-05	19148	DP1145_14	136.96	103.73			3365900	2636	506	2463	4467	6634;6635;6636	6635		3	9606
VFIGNLNTLVVK	Unmodified	1315.7864	0.7863724	139	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		19.961	19.961	2	0.01311	15205	DP1145_14	83.862	46.303			92078000	2637	139	2464	4468	6637;6638	6637		2	9606
VFIMDSCDELIPEYLNFIR	Oxidation (M)	2389.1334	0.1334053	143	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	3	0			1			23.58	23.58	2	4.6135000000000004E-24	20783	DP1145_13	179.59	138.79			7599300	2638	143	2465	4469	6639;6640;6641	6640	114	3	9606
VFLENVIR	Unmodified	988.57057	0.57056597	370	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					2	18.992	18.992	1;2	8.428699999999999E-89	12859	DP1145_15	217.64	114.87			542190000	2639	370	2466	4470;4471	6642;6643;6644	6644		2	9606
VFLKEDTGETHGDTR	Unmodified	1703.8115	0.81147753	586	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	1	3	0			1			14.139	14.139	3	0.0051125	6502	DP1145_13	127.03	79.783			106940000	2640	586	2467	4472	6645	6645		0	9606
VFNLYPR	Unmodified	907.49159	0.49158736	503	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	2	0		1				18.076	18.076	2	0.022328	13359	DP1145_12	121.87	54.879			16209000	2641	503	2468	4473	6646	6646		0	9606
VFQFLNAK	Unmodified	965.53345	0.53345218	404	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	18.692	18.692	2	1.5223E-07	12540	DP1145_15	132.72	66.915			149340000	2642	404	2469	4474	6647;6648	6647		2	9606
VFQPPPPPPPAPSGDAPAEKER	Unmodified	2280.1539	0.15388147	648	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				16.275	16.275	3	0.025981	10449	DP1145_12	91.589	70.281			5678600	2643	648	2470	4475	6649	6649		1	9606
VFTTQELVQAFTHAPATLEADR	Unmodified	2444.2336	0.23358835	102	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		22.151	22.151	3	1.5669999999999998E-38	18296	DP1145_14	185.85	145.84			24991000	2644	102	2471	4476	6650	6650		1	9606
VGDGDLSAEEIPENEVSLR	Unmodified	2027.9647	0.96474329	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			19.078	19.078	2	0	14836	DP1145_12	305.75	256.67			378010000	2645	480	2472	4477;4478	6651;6652;6653;6654	6651		4	9606
VGDGDLSAEEIPENEVSLRR	Unmodified	2184.0659	0.065854319	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.75	0.829		2	1	1		17.973	17.973	2;3	0.00010471	12537	DP1145_13	139.08	103.23			507690000	2646	480	2473	4479;4480;4481;4482	6655;6656;6657;6658;6659	6658		5	9606
VGINYQPPTVVPGGDLAK	Unmodified	1823.9781	0.97814893	393;547;662	P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3	TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain	no	no	0	0	0	3	1.41	1	1	1	1	1	19.014	19.014	2	4.8711E-34	12727	DP1145_11	184.96	147.27			1774399999.9999998	2647	393;547;662	2474	4483;4484;4485;4486;4487	6660;6661;6662;6663;6664;6665;6666;6667;6668	6660		9	9606
VGLTNYAAAYCTGLLLAR	Unmodified	1926.0033	0.003317824	283	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	0	1					21.4	21.4	2	0.0089628	16268	DP1145_11	93.348	52.581			3798300	2648	283	2475	4488	6669	6669		1	9606
VGMVETNSQDRPVDDVK	Oxidation (M)	1903.8946	0.89455524	784	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	1	1	5	0					1	14.516	14.516	3	2.7425E-05	6134	DP1145_15	153.41	110.36			32441000	2649	784	2476	4489	6670	6670	549	0	9606
VGPATPSAQVGK	Unmodified	1110.6033	0.60332266	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.39	14.39	2	3.4004E-32	7412	DP1145_12	187.5	154.61			149540000	2650	451	2477	4490;4491;4492;4493	6671;6672;6673;6674	6672		4	9606
VGVKEELLAVGK	Unmodified	1240.7391	0.73908786	278	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2.5	0.5		2	2			17.027	17.027	2;3	1.0455E-15	11676	DP1145_12	162.26	128.71			908150000	2651	278	2478	4494;4495;4496;4497	6675;6676;6677;6678;6679	6677		5	9606
VGVKEEVLPVGK	Unmodified	1252.7391	0.73908786	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.5		1	1			15.657	15.657	3	0.00010013	8844	DP1145_13	110.31	85.238			276640000	2652	278	2479	4498;4499	6680;6681;6682;6683	6682		4	9606
VGWEQLLTTIAR	Unmodified	1385.7667	0.76669959	62	P12814;O43707	ACTN1;ACTN4	Alpha-actinin-1;Alpha-actinin-4	yes	no	0	0	0	2	0		1				22.732	22.732	2	0.015895	20208	DP1145_12	80.916	26.85			1676700	2653	62	2480	4500	6684;6685	6684		2	9606
VHIEIGPDGR	Unmodified	1091.5724	0.57235688	236;313;327	P31943;P52597;P55795	HNRNPH1;HNRNPF;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	3.5	0.5			1	1		15.572	15.572	2	9.8959E-05	8301	DP1145_14	117.81	83.889			354390000	2654	236;313;327	2481	4501;4502	6686;6687	6687		2	9606
VHIGQVIMSIR	Oxidation (M)	1267.7071	0.70707622	224	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	1	0	5	0					1	17.303	17.303	3	0.039045	10508	DP1145_15	72.096	32.222			69149000	2655	224	2482	4503	6688	6688	179	0	9606
VHTVVASNNGSVFSVEVDGSK	Unmodified	2131.0546	0.054561351	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			17.578	17.578	3	0.00097733	11950	DP1145_13	86.357	70.367			89308000	2656	123	2483	4504	6689	6689		1	9606
VIDPATATSVDLR	Unmodified	1356.7249	0.72489436	307	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			17.878	17.878	2	0.0046277	12539	DP1145_13	84.17	45.867			35554000	2657	307	2484	4505	6690	6690		1	9606
VIDRFDEGEDGEGDFLVVGSIR	Unmodified	2423.1605	0.16048299	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	3	0			1			20.427	20.427	2	0.00091233	16151	DP1145_13	121.45	91.27			0	2658	734	2485	4506	6691	6691		1	9606
VIDSSDVVVQVLDAR	Unmodified	1613.8625	0.86245047	461	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				20.949	20.949	2	0.0011515	17701	DP1145_12	144.57	70.039			11280000	2659	461	2486	4507	6692	6692		1	9606
VIERPPLTQQQAAQK	Unmodified	1705.9475	0.9475175	548	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	3	0			1			14.697	14.697	3	0.0002412	7359	DP1145_13	159.58	134.42			14028000	2660	548	2487	4508	6693	6693		1	9606
VIGLQIFNIDTDR	Unmodified	1502.8093	0.80929269	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2.5	0.5		1	1			21.681	21.681	2	6.6224E-69	18726	DP1145_12	261.16	205.15			134530000	2661	534	2488	4509;4510	6694;6695;6696;6697	6694		4	9606
VIGNQSLVNELAFTAR	Unmodified	1730.9315	0.93153309	440	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		20.29	20.29	2	0.0017816	15634	DP1145_14	110.07	71.434			21153000	2662	440	2489	4511	6698	6698		1	9606
VIGSELVQK	Unmodified	971.56515	0.56514624	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3	0			2			16.048	16.048	2	0.00014104	9425	DP1145_13	119.41	38.944			0	2663	248	2490	4512;4513	6699;6700	6699		2	9606
VIGSGCNLDSAR	Unmodified	1247.5928	0.59283433	136	P07195;Q6ZMR3;P07864;P00338	LDHB;LDHAL6A;LDHC;LDHA	L-lactate dehydrogenase B chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase A chain	yes	no	0	0	0	1	0	1					15.208	15.208	2	0.015895	6826	DP1145_11	80.916	21.763			18167000	2664	136	2491	4514	6701	6701		1	9606
VIHDNFGIVEGLMTTVHAITATQK	Oxidation (M)	2610.3476	0.34757225	114	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	4	0				1		21.079	21.079	3	1.3221E-06	16612	DP1145_14	122.87	101			5276500	2665	114	2492	4515	6702	6702	73	1	9606
VIISAPSADAPMFVMGVNHEK	2 Oxidation (M)	2244.0919	0.091874835	114	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	2	0	3	0			1			17.906	17.906	3	0.024595	12499	DP1145_13	50.098	30.779			10659000	2666	114	2493	4516	6703	6703	74;75	0	9606
VILDLTPNYR	Unmodified	1202.6659	0.66592292	142	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	3	0			1			18.879	18.879	2	6.6869E-06	14014	DP1145_13	127.46	47.024			51329000	2667	142	2494	4517	6704;6705	6704		2	9606
VILHLKEDQTEYLEER	Unmodified	2014.0371	0.037120373	143;138	P08238;Q58FF7;Q58FF6;P07900	HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha	no	no	0	0	1	3	0			1			17.181	17.181	3	0.0068265	11420	DP1145_13	79.317	47.803			89429000	2668	143;138	2495	4518	6706	6706		1	9606
VIMVTGDHPITAK	Oxidation (M)	1396.7384	0.73843593	119;173;200	P05023;P13637;P50993;Q13733;P54707;P20648	ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2;Potassium-transporting ATPase alpha chain 1	no	no	0	1	0	2.8	1.83	2	1			2	15.066	15.066	2;3	9.0069E-07	8458	DP1145_12	146.5	96.03			213180000	2669	119;173;200	2496	4519;4520;4521;4522;4523	6707;6708;6709;6710;6711;6712;6713;6714	6711	79	8	9606
VIMVTGDHPITAK	Unmodified	1380.7435	0.74352131	119;173;200	P05023;P13637;P50993;Q13733;P54707;P20648	ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2;Potassium-transporting ATPase alpha chain 1	no	no	0	0	0	2	0		1				15.672	15.672	3	0.0070615	9401	DP1145_12	105.25	70.557			6036800	2670	119;173;200	2496	4524	6715	6715		0	9606
VINEPTAAALAYGLDK	Unmodified	1644.8723	0.87228688	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.58	19.58	2	1.597E-08	14850	DP1145_13	164.48	115.5			76548000	2671	255	2497	4525	6716	6716		0	9606
VIQCFAETGQVQK	Unmodified	1506.7501	0.75006325	408	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					16.391	16.391	2	0.0017317	8530	DP1145_11	120.27	83.579			22016000	2672	408	2498	4526	6717	6717		1	9606
VIQGDGVDINTLQEIVEGMK	Unmodified	2157.0987	0.098734352	275	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	3	0			1			23.188	23.188	2	0.0122	20211	DP1145_13	89.26	54.874			4500100	2673	275	2499	4527	6718	6718		1	9606
VIRPLDQPSSFDATPYIK	Unmodified	2046.0786	0.078591257	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	2	0		1				18.701	18.701	3	1.8952E-34	14254	DP1145_12	178	138.48			32867000	2674	566	2500	4528	6719	6719		1	9606
VISGVLQLGNIVFK	Unmodified	1485.8919	0.89190011	245	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	0		1				22.02	22.02	2	0.0098093	19252	DP1145_12	98.044	69.088			1520000	2675	245	2501	4529	6720	6720		1	9606
VIVVGNPANTNCLTASK	Unmodified	1756.9142	0.91416847	261	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	1	0	1					17.346	17.346	2	0.0081209	10060	DP1145_11	149.57	116.53			0	2676	261	2502	4530	6721	6721		1	9606
VKDLVLSVHNR	Unmodified	1278.7408	0.74081919	488	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	3	0			1			14.639	14.639	3	0.013989	7297	DP1145_13	109.39	91.199			6126200	2677	488	2503	4531	6722	6722		0	9606
VKGGGHVAQIYAIR	Unmodified	1467.831	0.83103118	356	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					1	15.029	15.029	3	0.0031091	6996	DP1145_15	101.39	81.812			39184000	2678	356	2504	4532	6723	6723		1	9606
VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK	Unmodified	3949.3584	0.35844324	134	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		17.859	17.859	3	1.3225E-09	12077	DP1145_14	70.501	66.1			31198000	2679	134	2505	4533	6724	6724		1	9606
VKLLLQVQHASK	Unmodified	1362.8347	0.83471958	122;168	P05141;P12236;P12235	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	1	1	0	1					15.291	15.291	3	0.0005596	6866	DP1145_11	121.68	85.263			5559500	2680	122;168	2506	4534	6725	6725		1	9606
VKPAPDETSFSEALLK	Unmodified	1730.9091	0.90906631	436	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	4	0				1		18.16	18.16	3	0.028231	12412	DP1145_14	47.916	33.975			41201000	2681	436	2507	4535	6726	6726		1	9606
VLAFLSSVAGDALTR	Unmodified	1518.8406	0.84059282	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1.5	0.5	1	1				21.557	21.557	2	5.0422E-06	16414	DP1145_11	151.98	100.71			11571000	2682	605	2508	4536;4537	6727;6728	6727		2	9606
VLAFLVLSR	Unmodified	1016.6383	0.6382516	785	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				21.018	21.018	2	0.038464	17773	DP1145_12	107.01	62.286			7254300	2683	785	2509	4538	6729	6729		0	9606
VLANPGNSQVAR	Unmodified	1224.6575	0.65748349	484	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				14.463	14.463	2	0.037961	7599	DP1145_12	67.704	27.637			4842600	2684	484	2510	4539	6730	6730		1	9606
VLATVTKPVGGDK	Unmodified	1283.7449	0.74490152	415	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	3	1.41	1			2		14.18	14.18	2;3	1.7124E-06	6131	DP1145_14	150.15	88.461			104320000	2685	415	2511	4540;4541;4542	6731;6732;6733;6734	6732		4	9606
VLDALVFHFLGFR	Unmodified	1532.8504	0.85036964	465	Q13895	BYSL	Bystin	yes	yes	0	0	0	3	0			2			23.396	23.396	2;3	1.5157E-07	20411	DP1145_13	152.97	107.61			12987000	2686	465	2512	4543;4544	6735;6736	6735		2	9606
VLDELTLAR	Unmodified	1028.5866	0.58660996	5;15;16	P02533;CON__P02533;CON__Q9QWL7;CON__Q04695;CON__Q6IFX2;Q04695;P19012;CON__A2A4G1;CON__P19012;CON__P08727;P08727;CON__P19001;CON__P08779;P08779	KRT14;KRT17;KRT15;KRT19;KRT16	Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 16	no	no	0	0	0	1	0	1					18.36	18.36	2	0.028599	11835	DP1145_11	80.438	40.17		+	157670000	2687	5;15;16	2513	4545	6737	6737		1	9606
VLDELTLTK	Unmodified	1030.591	0.59102664	18	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	0	1					18.061	18.061	2	0.0073721	11121	DP1145_11	100.02	52.443		+	599350000	2688	18	2514	4546	6738;6739	6738		2	9606
VLDLVEVLVTK	Unmodified	1226.7486	0.74858991	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.967	21.967	2	3.0338E-33	19101	DP1145_12	189.18	128.27			14897000	2689	663	2515	4547	6740;6741;6742	6740		3	9606
VLDPNTVFALVNYISFK	Unmodified	1939.0455	0.045500215	19	CON__P34955			yes	yes	0	0	0	3	0			2			25.062	25.062	2;3	0.00081191	22796	DP1145_13	140.82	105.11		+	3350300	2690	19	2516	4548;4549	6743;6744;6745	6743		3	
VLEEANQAINPK	Unmodified	1324.6987	0.69867961	611	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			15.741	15.741	2	2.1217E-06	8856	DP1145_13	172.88	120.93			74705000	2691	611	2517	4550	6746;6747	6746		2	9606
VLELNASDER	Unmodified	1144.5724	0.57241646	242	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	4	0				1		16.218	16.218	2	2.0555E-17	9235	DP1145_14	178.94	89.801			0	2692	242	2518	4551	6748	6748		1	9606
VLEQLTGQTPVFSK	Unmodified	1545.8403	0.84025847	381	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	18.792	18.792	2	0.01169	12832	DP1145_15	80.245	48.374			462820000	2693	381	2519	4552	6749	6749		1	9606
VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK	Unmodified	3393.8296	0.82964079	734	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	3	0			1			18.579	18.579	4	6.2885E-13	13472	DP1145_13	108.23	84.833			298770000	2694	734	2520	4553	6750	6750		1	9606
VLGLVLLR	Unmodified	881.60622	0.60622319	178	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	4	0				1		20.362	20.362	2	0.022452	15774	DP1145_14	95.957	78.993			22719000	2695	178	2521	4554	6751	6751		1	9606
VLGQSSSKPAAAATGPPPGNTSSTQK	Unmodified	2438.2401	0.24013029	694	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	1	2	0		1				14.167	14.167	3	0.0013793	7319	DP1145_12	61.141	25.393			4041200	2696	694	2522	4555	6752	6752		1	9606
VLIANNGIAAVK	Unmodified	1181.7132	0.71320746	441;43	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	no	no	0	0	0	1	0	1					17.067	17.067	2	1.4617E-09	9501	DP1145_11	160.63	106.08			646660000	2697	441;43	2523	4556	6753	6753		0	9606
VLLATLSIPITPER	Unmodified	1521.913	0.91302948	469	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				20.949	20.949	2	0.0014411	17744	DP1145_12	103.31	62.588			9103000	2698	469	2524	4557	6754	6754		1	9606
VLLDNVENK	Unmodified	1042.5659	0.56587452	615	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	2	0		1				16.376	16.376	2	0.039301	10147	DP1145_12	75.738	22.952			527490000	2699	615	2525	4558	6755	6755		1	9606
VLLGPLSPYTIEFLR	Unmodified	1716.9814	0.98144339	770	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		23.228	23.228	2	0.0010106	19682	DP1145_14	128.88	106.55			6386000	2700	770	2526	4559	6756;6757	6756		2	9606
VLLLSSPGLEELYR	Unmodified	1587.8872	0.88720866	578	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	2	0		1				21.406	21.406	2	0.0010156	18336	DP1145_12	122.69	89.651			4038600	2701	578	2527	4560	6758	6758		1	9606
VLLPEYGGTK	Unmodified	1075.5914	0.59136099	345	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	5	0					1	17.204	17.204	2	0.025565	10377	DP1145_15	80.755	44.373			17141000	2702	345	2528	4561	6759	6759		1	9606
VLNNFISNQK	Unmodified	1175.6299	0.62987176	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			16.776	16.776	2	1.0725000000000001E-27	11184	DP1145_12	175.51	112.8			626680000	2703	278	2529	4562;4563	6760;6761	6760		2	9606
VLNSYWVGEDSTYK	Unmodified	1659.7781	0.77805214	343	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	0	1					18.86	18.86	2	0.0010987	12492	DP1145_11	105.36	73.516			16607000	2704	343	2530	4564	6762	6762		1	9606
VLPLEALVTDAGEVTEAGK	Unmodified	1911.0201	0.020073325	605	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1.5	0.5	1	1				22.95	22.95	2;3	0.00085925	18394	DP1145_11	89.374	64.207			4687400	2705	605	2531	4565;4566	6763;6764;6765	6763		3	9606
VLPPNWK	Unmodified	852.48577	0.48577371	361	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	16.286	16.286	2	2.7889E-07	8751	DP1145_15	131.65	107.45			37839000	2706	361	2532	4567	6766;6767	6767		2	9606
VLPPPAGYVPIR	Unmodified	1277.7496	0.74959297	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				18.41	18.41	2	0.0026766	13758	DP1145_12	98.392	57.363			10593000	2707	84	2533	4568	6768;6769	6768		2	9606
VLPSFWIPSLTPEAK	Unmodified	1683.9236	0.92359417	777	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		22.451	22.451	2	0.00068424	18653	DP1145_14	139.32	109.18			16659000	2708	777	2534	4569	6770;6771	6770		2	9606
VLPSITTEILK	Unmodified	1212.7329	0.73293985	241	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		19.66	19.66	2	0.0015279	14643	DP1145_14	104.01	68.395			209070000	2709	241	2535	4570	6772	6772		1	9606
VLPSIVNEVLK	Unmodified	1209.7333	0.7332742	655	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		20.33	20.33	2	0.00014617	15516	DP1145_14	114.51	60.738			63918000	2710	655	2536	4571	6773;6774	6773		2	9606
VLQALEGLK	Unmodified	969.58588	0.58588168	256	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	17.992	17.992	2	0.035989	11318	DP1145_15	106.36	43.639			10582000	2711	256	2537	4572	6775	6775		0	9606
VLQATVVAVGSGSK	Unmodified	1314.7507	0.75071518	345	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	5	0					1	16.426	16.426	2	0.02297	9101	DP1145_15	96.82	50.662			32999000	2712	345	2538	4573	6776	6776		0	9606
VLQCHKPVHAEYLEK	Unmodified	1849.9509	0.95088832	0	A0A024RBG1;Q96G61;Q8NFP7;Q9NZJ9	NUDT4;NUDT11;NUDT10	Diphosphoinositol polyphosphate phosphohydrolase 3-beta;Diphosphoinositol polyphosphate phosphohydrolase 3-alpha;Diphosphoinositol polyphosphate phosphohydrolase 2	yes	no	0	0	1	5	0					1	14.116	14.116	4	0.0011757	5568	DP1145_15	125.84	88.182			6473700	2713	0	2539	4574	6777	6777		0	9606
VLQSALAAIR	Unmodified	1040.6342	0.63422886	436	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		17.759	17.759	2	0.00064295	11878	DP1145_14	111.74	38.123			95578000	2714	436	2540	4575	6778	6778		1	9606
VLSIGDGIAR	Unmodified	999.57129	0.57129425	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			17.533	17.533	2	3.8596E-08	10344	DP1145_11	139.97	47.278			189940000	2715	217	2541	4576;4577;4578	6779;6780;6781	6779		3	9606
VLSPTAAKPSPFEGK	Unmodified	1527.8297	0.82969378	644	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2.5	0.5		1	1			15.657	15.657	3	0.00074985	8911	DP1145_13	107.74	76.774			300420000	2716	644	2542	4579;4580	6782;6783;6784;6785	6784		4	9606
VLSRPNAQELPSMYQR	Unmodified	1887.9625	0.96251564	655	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	1	4	0				1		16.959	16.959	3	0.00080343	10465	DP1145_14	116.78	84.25			37352000	2717	655	2543	4581	6786	6786		1	9606
VLTELLEQER	Unmodified	1228.6663	0.66631685	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				18.676	18.676	2	2.2766999999999996E-102	14185	DP1145_12	229.44	155.18			34385000	2718	451	2544	4582	6787;6788;6789	6788		3	9606
VLTGVAGEDAECHAAK	Unmodified	1626.7672	0.76716988	101	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		1				14.667	14.667	3	5.2332000000000006E-33	7838	DP1145_12	191.01	163.04			44619000	2719	101	2545	4583	6790;6791;6792	6791		3	9606
VLTPELYAELR	Unmodified	1302.7184	0.71835242	170	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	3.5	1.12		1	1	1	1	19.557	19.557	2	1.7836E-24	13809	DP1145_15	175.91	123.43			54228000	2720	170	2546	4584;4585;4586;4587	6793;6794;6795;6796;6797;6798	6797		6	9606
VLYDAEISQIHQSVTDTNVILSMDNSR	Oxidation (M)	3063.4819	0.48189348	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	1	0	1	0	1					20.32	20.32	3	3.4255E-05	14696	DP1145_11	65.881	47.669		+	33975000	2721	21	2547	4588	6799;6800	6799	22	2	9606
VMEIVDADEKVR	Oxidation (M)	1418.7075	0.70752973	789	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	1	1	1	0	1					15.065	15.065	3	0.0066384	6554	DP1145_11	80.871	25.766			15442000	2722	789	2548	4589	6801	6801	553	1	9606
VMLALPSVR	Oxidation (M)	1000.5739	0.57393679	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		18.327	18.327	2	0.0081169	12524	DP1145_14	110.31	39.397			141110000	2723	499	2549	4590	6802	6802	377	1	9606
VMLALPSVR	Unmodified	984.57902	0.57902216	499	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		18.96	18.96	2	0.026866	13606	DP1145_14	81.548	55.654			44757000	2724	499	2549	4591	6803	6803		1	9606
VMLGETNPADSKPGTIR	Oxidation (M)	1800.904	0.90399771	181;68	P15531;O60361;P22392	NME1;NME2P1;NME2	Nucleoside diphosphate kinase A;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase B	no	no	0	1	1	5	0					1	15.455	15.455	3	0.0011778	7662	DP1145_15	103.04	57.835			48395000	2725	181;68	2550	4592	6804	6804	49	1	9606
VMQQQQQTTQQQLPQK	Oxidation (M)	1956.9687	0.96872323	500	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				14.028	14.028	2	0.039707	7073	DP1145_12	88.338	22.837			1394900	2726	500	2551	4593	6805	6805	379	1	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	Oxidation (M)	3301.5555	0.55546913	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3	0.816		1	1	1		17.671	17.671	3	8.6908E-11	12766	DP1145_12	85.004	62.116			315390000	2727	480	2552	4594;4595;4596	6806;6807;6808;6809;6810;6811	6806	368	6	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	Unmodified	3285.5606	0.56055451	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0			1			18.178	18.178	3	3.0801E-11	13011	DP1145_13	88.295	63.658			93702000	2728	480	2552	4597	6812;6813;6814	6812		3	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	Oxidation (M)	3429.6504	0.65043215	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	3	0.816		1	1	1		16.883	16.883	4	5.5516E-11	11476	DP1145_12	83.834	64.296			615310000	2729	480	2553	4598;4599;4600	6815;6816;6817;6818;6819;6820;6821	6815	368	7	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	Unmodified	3413.6555	0.65551752	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.5		1	1			17.392	17.392	4	5.0699E-13	12286	DP1145_12	95.713	73.201			264230000	2730	480	2553	4601;4602	6822;6823;6824;6825;6826;6827	6823		6	9606
VNEAFEALK	Unmodified	1019.5288	0.52876073	180	P15173	MYOG	Myogenin	yes	yes	0	0	0	1	0	1					21.491	21.491	2	0.0058678	16317	DP1145_11	101.54	31.717			25353000	2731	180	2554	4603	6828	6828		1	9606
VNFLPEIITLSK	Unmodified	1372.7966	0.79660274	471	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					22.006	22.006	2	0.017515	17031	DP1145_11	79.201	42.884			4867400	2732	471	2555	4604	6829;6830	6829		2	9606
VNILEVASGAVLR	Unmodified	1339.7823	0.78234966	433	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					21.445	21.445	2	0.0047949	16319	DP1145_11	92.611	39.118			5870500	2733	433	2556	4605	6831	6831		1	9606
VNNADDFPNLFR	Unmodified	1420.6735	0.67352749	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.037	20.037	2	1.6791E-166	14202	DP1145_11	260.76	191.91			162930000	2734	441	2557	4606	6832;6833;6834	6832		3	9606
VNNSSLIGLGYTQTLKPGIK	Unmodified	2102.1736	0.17355427	203	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	1	4	0				1		18.66	18.66	3	0.0085763	13094	DP1145_14	98.175	75.156			70642000	2735	203	2558	4607	6835	6835		1	9606
VNQIGSVTESLQACK	Unmodified	1632.8141	0.81412007	133	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	0	1					17.561	17.561	2	0.015023	10614	DP1145_11	77.062	0			12004000	2736	133	2559	4608	6836	6836		1	9606
VNVPVIGGHAGK	Unmodified	1146.6509	0.65094155	262	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	5	0					1	15.498	15.498	2	0.015031	7647	DP1145_15	96.948	67.799			0	2737	262	2560	4609	6837	6837		1	9606
VPADTEVVCAPPTAYIDFAR	Unmodified	2191.062	0.061954915	332	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	4	0				1		20.59	20.59	2	0.00081398	16096	DP1145_14	153.32	133.04			12110000	2738	332	2561	4610	6838	6838		1	9606
VPFSLLR	Unmodified	830.50142	0.50142377	117	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	4	0				1		18.691	18.691	2	0.0010796	13613	DP1145_14	119.22	35.196			51527000	2739	117	2562	4611	6839	6839		1	9606
VPLLLEEQGVVDYFLR	Unmodified	1889.0299	0.02985015	192	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	3	0			1			24.018	24.018	2	1.9920999999999999E-87	21344	DP1145_13	267.02	146.25			6803400	2740	192	2563	4612	6840;6841	6840		2	9606
VPLSEFDFSWSK	Unmodified	1440.6925	0.6925316	731	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	5	0					1	21.191	21.191	2	0.022847	16051	DP1145_15	75.387	36.82			11671000	2741	731	2564	4613	6842	6842		1	9606
VPPAINQFTQALDR	Unmodified	1568.8311	0.83109076	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		19.976	19.976	2	0.0015299	15154	DP1145_14	118.9	87.147			45188000	2742	366	2565	4614	6843;6844	6843		2	9606
VPPSGSGGSELSNGEAGEAYR	Unmodified	2019.9134	0.91337642	642	Q96PE2	ARHGEF17	Rho guanine nucleotide exchange factor 17	yes	yes	0	0	0	1	0	1					15.949	15.949	2	0.00605	7855	DP1145_11	87.719	39.531			0	2743	642	2566	4615	6845	6845		1	9606
VPQAQPTKPALK	Unmodified	1276.7503	0.75032125	105	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	1	3	0			1			13.544	13.544	3	0.0042109	5813	DP1145_13	89.266	55.305			635670	2744	105	2567	4616	6846	6846		1	9606
VPQVSTPTLVEVSR	Unmodified	1510.8355	0.83550744	12	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	4	0				1		18.2	18.2	2	0.0021883	12403	DP1145_14	130.1	89.018		+	0	2745	12	2568	4617	6847	6847		1	9606
VPSLSVPWLQDR	Unmodified	1395.751	0.75104953	397	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	0	0	4	0				1		21.146	21.146	2	0.00026978	16620	DP1145_14	104.52	57.336			6503100	2746	397	2569	4618	6848	6848		1	9606
VPTANVSVVDLTCR	Unmodified	1529.7872	0.78717704	114	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.46	18.46	2	1.7617E-22	12765	DP1145_14	176.32	120.86			86192000	2747	114	2570	4619	6849;6850	6849		2	9606
VPVNLLR	Unmodified	809.51232	0.51232281	471	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.967	16.967	2	0.01728	9427	DP1145_11	99.511	34.948			7882200	2748	471	2571	4620	6851	6851		0	9606
VQAERPDTMLGVVCGALHVADVSLR	Unmodified	2692.3789	0.37888915	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					21.587	21.587	3	2.6697E-12	16440	DP1145_11	151.16	115.99			2835400	2749	441	2572	4621	6852;6853	6852		2	9606
VQAERPDTMLGVVCGALHVADVSLR	Oxidation (M)	2708.3738	0.37380377	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					19.693	19.693	3	5.3207E-12	13635	DP1145_11	154.45	131.46			0	2750	441	2572	4622;4623	6854;6855	6854	338	2	9606
VQALEEANNDLENK	Unmodified	1585.7584	0.75837933	20	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					16.771	16.771	2	0.011099	9111	DP1145_11	89.805	50.182		+	0	2751	20	2573	4624	6856	6856		1	9606
VQDDEVGDGTTSVTVLAAELLR	Unmodified	2287.1543	0.15433498	399	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			23.263	23.263	3	0.034971	20228	DP1145_13	115.36	81.159			3753800	2752	399	2574	4625	6857	6857		0	9606
VQENCIDLVGR	Unmodified	1301.6398	0.63978452	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				17.207	17.207	2	0.0077887	11839	DP1145_12	106.88	56.076			0	2753	84	2575	4626	6858	6858		1	9606
VQENSAYICSR	Unmodified	1325.6034	0.60339901	785	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1	0	1					15.063	15.063	2	0.012802	6566	DP1145_11	88.496	50.335			7501600	2754	785	2576	4627	6859	6859		1	9606
VQLVVGDGR	Unmodified	941.52943	0.52942943	204	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	4	0				1		16.115	16.115	2	0.01349	9020	DP1145_14	93.429	32.641			88183000	2755	204	2577	4628	6860	6860		1	9606
VQMRNDLGKINK	Oxidation (M)	1430.7664	0.76638202	455	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	1	2	3	0			1			14.607	14.607	2	0.018414	7210	DP1145_13	95.523	43.574			0	2756	455	2578	4629	6861	6861	349	1	9606
VQQAELHTGSLPR	Unmodified	1434.7579	0.75792582	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1.41	2			1		15.061	15.061	2;3	3.6394E-06	6541	DP1145_11	149.49	76.259			1700599999.9999998	2757	441	2579	4630;4631;4632	6862;6863;6864;6865;6866;6867;6868	6866		7	9606
VQQTVQDLFGR	Unmodified	1289.6728	0.67279921	255	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			18.679	18.679	2	2.8825E-43	13554	DP1145_13	195.79	111.29			115830000	2758	255	2580	4633	6869	6869		1	9606
VQSLQATFGTFESILR	Unmodified	1795.9468	0.9468488	423	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			22.84	22.84	2	1.6935E-149	19620	DP1145_13	253.42	182.69			31763000	2759	423	2581	4634	6870	6870		1	9606
VQTLEELEELGKEECFQNK	Unmodified	2322.1049	0.10494194	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	1	3	0			1			19.68	19.68	3	0.016815	15208	DP1145_13	82.755	48.92			16365000	2760	673	2582	4635	6871	6871		1	9606
VREEEIEVDSR	Unmodified	1359.663	0.66302238	485	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	1	4	0				1		14.687	14.687	3	0.012522	6871	DP1145_14	105.03	73.506			26831000	2761	485	2583	4636	6872	6872		0	9606
VRPDYTAQNLDHGK	Unmodified	1612.7958	0.79576789	401	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	1	4	0				1		14.179	14.179	3	0.0011917	6191	DP1145_14	99.927	62.134			7289100	2762	401	2584	4637	6873	6873		1	9606
VSALNSVHCEHVEDEGESR	Unmodified	2152.9444	0.94435897	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.25	0.433	3	1				14.763	14.763	2;3;4	1.895E-09	8022	DP1145_12	161.99	138.31			1267900000	2763	441	2585	4638;4639;4640;4641	6874;6875;6876;6877;6878;6879	6879		5	9606
VSASSKEPAMSMNSARSTNILDNMGK	2 Oxidation (M)	2757.2732	0.27316303	88	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	2	2	5	0					1	19.995	19.995	3	0.011648	14860	DP1145_15	46.273	20.469			52021000	2764	88	2586	4642	6880	6880	59;60	1	9606
VSDGDWICPDKK	Unmodified	1418.65	0.65001485	96	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	1	4	0				2		16.199	16.199	2;3	6.0025E-06	9232	DP1145_14	153.1	125.02			115140000	2765	96	2587	4643;4644	6881;6882	6882		2	9606
VSEFNVSSEGSGEK	Unmodified	1454.6525	0.65251728	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	4	0				1		15.758	15.758	2	0.015747	8514	DP1145_14	85.672	34.236			0	2766	673	2588	4645	6883	6883		1	9606
VSFGGHLRPELFDENLPPNTPLK	Unmodified	2576.3387	0.33872212	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	1	1		1			19.338	19.338	3;4	0.013948	14572	DP1145_13	89.831	63.813			40163000	2767	278	2589	4646;4647	6884;6885;6886	6885		3	9606
VSFGGHLRPELFDENLPPNTPLKR	Unmodified	2732.4398	0.43983315	278	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2.5	0.5		1	1			18.652	18.652	4	0.0073538	14118	DP1145_12	76.417	57.124			57206000	2768	278	2590	4648;4649	6887;6888;6889	6887		3	9606
VSFYQLSHFLQCK	Unmodified	1655.813	0.81299786	185	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1	0	1					20.528	20.528	3	0.01149	15000	DP1145_11	103.75	71.135			6018000	2769	185	2591	4650	6890	6890		1	9606
VSGVECMIIANDATVK	Oxidation (M)	1721.8328	0.8328066	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0.707		1	2	1		17.659	17.659	2	2.3056E-33	11977	DP1145_13	198.48	152.08			58240000	2770	710	2592	4651;4652;4653;4654	6891;6892;6893;6894	6892	515	4	9606
VSISEGDDKIEYR	Unmodified	1509.7311	0.73110195	205	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		16.198	16.198	3	1.5665E-23	9252	DP1145_14	181.66	115			165600000	2771	205	2593	4655	6895;6896	6895		2	9606
VSIVNQYGK	Unmodified	1006.5447	0.54474515	686	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			15.642	15.642	2	0.0023317	8691	DP1145_13	108.09	54.736			226660000	2772	686	2594	4656	6897	6897		1	9606
VSLLNEQFLPLIR	Unmodified	1540.8977	0.89771377	699	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1.5	0.5	1	1				22.321	22.321	2	3.1685E-07	17580	DP1145_11	148.56	86.964			4771700	2773	699	2595	4657;4658	6898;6899;6900	6899		3	9606
VSSQFDPNKQTPSGK	Unmodified	1618.7951	0.79509919	412	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	1	2	0		1				14.167	14.167	3	0.010498	7228	DP1145_12	103.3	44.18			8072000	2774	412	2596	4659	6901	6901		0	9606
VSVADHSLHLSK	Unmodified	1291.6884	0.68844927	446	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	4	0				1		14.772	14.772	3	0.00032993	7061	DP1145_14	117.86	73.902			44207000	2775	446	2597	4660	6902;6903;6904	6903		3	9606
VSWDSVLSAEQTGR	Unmodified	1533.7423	0.74233534	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	2	0		1				19.677	19.677	2	0.012811	15887	DP1145_12	78.692	34.734			315430000	2776	520	2598	4661	6905;6906	6906		2	9606
VTEDTSSVLR	Unmodified	1105.5615	0.56151742	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		15.376	15.376	2	5.1298E-57	6883	DP1145_11	204.62	139.87			924850000	2777	123	2599	4662;4663;4664;4665	6907;6908;6909;6910;6911;6912	6907		6	9606
VTFGEDLSPEVFDESLPANTPLR	Unmodified	2532.2384	0.23839896	534	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				21.98	21.98	2	2.176E-05	19223	DP1145_12	180.27	159.47			2162300	2778	534	2600	4666	6913;6914;6915	6914		3	9606
VTFGLNR	Unmodified	805.44464	0.44463717	480	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		16.767	16.767	2	4.8635E-12	11151	DP1145_12	142.63	86.603			202410000	2779	480	2601	4667;4668;4669	6916;6917;6918	6916		3	9606
VTFSEDDEIINPEDVDPSVGR	Unmodified	2332.0707	0.070664925	439	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	4	0				1		20.362	20.362	2	8.8937E-28	15675	DP1145_14	233.97	194.57			54691000	2780	439	2602	4670	6919	6919		1	9606
VTIAQGGVLPNIQAVLLPK	Unmodified	1930.1615	0.16153303	118	Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E	yes	no	0	0	0	3.67	1.6	1	1		1	3	22.053	22.053	2;3	1.4198E-262	17248	DP1145_15	231.21	151.88			955880000	2781	118	2603	4671;4672;4673;4674;4675;4676	6920;6921;6922;6923;6924;6925;6926;6927;6928;6929	6928		10	9606
VTIASLPR	Unmodified	855.5178	0.51780212	438	Q12912	LRMP	Lymphoid-restricted membrane protein;Processed lymphoid-restricted membrane protein	yes	yes	0	0	0	2	0		2				16.128	16.128	1;2	0.0059659	10165	DP1145_12	110.63	39.721			733830000	2782	438	2604	4677;4678	6930;6931	6931		2	9606
VTQDELKEVFEDAAEIR	Unmodified	1990.9848	0.98475045	199	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.33	0.471		2	1			21.159	21.159	2;3	2.2708E-225	18031	DP1145_12	260.96	188.43			279120000	2783	199	2605	4679;4680;4681	6932;6933;6934	6933		3	9606
VTQLDLDGPK	Unmodified	1084.5764	0.57643921	453	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	4	0				1		16.515	16.515	2	0.012629	9802	DP1145_14	93.143	52.365			80146000	2784	453	2606	4682	6935	6935		1	9606
VTQSNFAVGYK	Unmodified	1212.6139	0.61388734	203	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	5	0					1	16.286	16.286	2	0.014984	8836	DP1145_15	86.136	55.449			30174000	2785	203	2607	4683	6936	6936		1	9606
VTVAGLAGKDPVQCSR	Unmodified	1656.8617	0.86173896	653	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	1	5	0					1	16.182	16.182	3	0.017125	8629	DP1145_15	82.529	61.276			16933000	2786	653	2608	4684	6937	6937		1	9606
VVALSMSPVDDTFISGSLDK	Oxidation (M)	2096.0347	0.034737111	543	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				1		20.262	20.262	2	0.0074569	15630	DP1145_14	118.51	86.03			60497000	2787	543	2609	4685	6938	6938	417	1	9606
VVALSMSPVDDTFISGSLDK	Unmodified	2080.0398	0.039822489	543	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		21.345	21.345	2	0.0033598	17199	DP1145_14	99.161	70.185			5807500	2788	543	2609	4686	6939	6939		1	9606
VVDALGNAIDGK	Unmodified	1170.6245	0.62445203	217	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		17.37	17.37	2	3.025E-11	11499	DP1145_13	160.75	115.42			188180000	2789	217	2610	4687;4688;4689	6940;6941;6942	6941		2	9606
VVDLLAPYAK	Unmodified	1087.6277	0.6277465	131	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			19.178	19.178	2	0.00017679	15032	DP1145_12	114.28	82.978			86899000	2790	131	2611	4690;4691	6943;6944	6943		1	9606
VVEEAPSIFLDAETR	Unmodified	1674.8465	0.84646606	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			19.965	19.965	2	1.0395E-13	16282	DP1145_12	167.2	126.61			847970000	2791	123	2612	4692;4693;4694	6945;6946;6947	6946		2	9606
VVEEAPSIFLDAETRR	Unmodified	1830.9476	0.94757708	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	1	0	1					18.76	18.76	3	0.0021822	12333	DP1145_11	134.04	111.06			137960000	2792	123	2613	4695	6948	6948		1	9606
VVEFSELDKPR	Unmodified	1317.6929	0.69286595	520	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	1	2.86	1.25	1	2	2	1	1	16.675	16.675	2;3	8.5103E-33	10437	DP1145_13	193.1	127.86			1795399999.9999998	2793	520	2614	4696;4697;4698;4699;4700;4701;4702	6949;6950;6951;6952;6953;6954;6955;6956;6957;6958	6956		9	9606
VVEGTPLIDGR	Unmodified	1154.6295	0.62953741	483	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					16.867	16.867	2	0.0040807	9094	DP1145_11	99.688	63.78			28095000	2794	483	2615	4703	6959;6960	6959		2	9606
VVEIAPAAHLDPQLR	Unmodified	1627.9046	0.90459006	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.29	1.03	2	2	2	1		17.741	17.741	2;3	9.8678E-70	12780	DP1145_12	193.49	119.99			1724599999.9999998	2795	164	2616	4704;4705;4706;4707;4708;4709;4710	6961;6962;6963;6964;6965;6966;6967;6968;6969;6970;6971;6972	6965		12	9606
VVFVFGPDKK	Unmodified	1134.6437	0.64373091	228	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	1	4	0				1		17.26	17.26	2	0.010256	10953	DP1145_14	127.46	82.741			17876000	2796	228	2617	4711	6973	6973		0	9606
VVGCSCVVVK	Unmodified	1105.5624	0.56238582	216	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	15.028	15.028	2	0.017956	6993	DP1145_15	87.639	56.11			24972000	2797	216	2618	4712	6974	6974		1	9606
VVHSYEELEENYTR	Unmodified	1766.8111	0.81114318	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.29	1.03	2	2	2	1		17.172	17.172	2;3	5.984700000000001E-41	11863	DP1145_12	193.81	161.34			1870699999.9999998	2798	164	2619	4713;4714;4715;4716;4717;4718;4719	6975;6976;6977;6978;6979;6980;6981;6982;6983	6980		8	9606
VVIGMDVAASEFFR	Oxidation (M)	1555.7705	0.77046434	133	P06733	ENO1	Alpha-enolase	yes	yes	0	1	0	4	0				1		20.174	20.174	2	0.0029136	15500	DP1145_14	111.86	72.309			5304100	2799	133	2620	4720	6984	6984	97	1	9606
VVIQSNDDIASR	Unmodified	1315.6732	0.67319314	614	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1.5	0.5	1	1				15.633	15.633	2	1.0331000000000001E-121	9320	DP1145_12	240.38	189.93			10984000	2800	614	2621	4721;4722	6985;6986	6986		2	9606
VVLLTEVDKLTK	Unmodified	1356.8228	0.82281749	264	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	1	4	0				1		18.66	18.66	3	3.0735E-22	13047	DP1145_14	175.74	147.51			3725900	2801	264	2622	4723	6987	6987		0	9606
VVLVLAGR	Unmodified	825.54362	0.54362294	344	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	17.393	17.393	2	0.00030054	10692	DP1145_15	122.15	54.121			273590000	2802	344	2623	4724	6988	6988		1	9606
VVPGIVYLGHIPPR	Unmodified	1515.8926	0.89256881	760	Q9ULW3	ABT1	Activator of basal transcription 1	yes	yes	0	0	0	4	0				1		18.642	18.642	3	0.0023186	13135	DP1145_14	92.112	66.1			6568200	2803	760	2624	4725	6989	6989		1	9606
VVPSDLYPLVLGFLR	Unmodified	1686.9709	0.97087871	485	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	3	0			1			24.638	24.638	3	0.029071	22216	DP1145_13	68.277	49.007			0	2804	485	2625	4726	6990	6990		1	9606
VVQGDIGEANEDVTQIVEILHSGPSK	Unmodified	2733.3821	0.38210308	569	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	3	0			1			21.678	21.678	3	0.010217	18099	DP1145_13	49.186	29.948			15926000	2805	569	2626	4727	6991	6991		1	9606
VVSNLPAITMEEVAPVSVSDAALLAPEEIKEK	Oxidation (M)	3364.7687	0.76873959	40	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	1	1	2	0		1				20.949	20.949	3	2.4084E-11	17661	DP1145_12	89.221	77.571			8880100	2806	40	2627	4728	6992	6992	27	1	9606
VVTKPGHIINPIK	Unmodified	1414.866	0.86601971	673	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	1	3	0			1			14.838	14.838	3	1.1612E-05	7555	DP1145_13	148.28	107.66			38085000	2807	673	2628	4729	6993	6993		0	9606
VVTTNYKPVANHQYNIEYER	Unmodified	2437.2026	0.20262257	175	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				2		16.143	16.143	3;4	0.00031588	9139	DP1145_14	178.52	153.34			520130000	2808	175	2629	4730;4731	6994;6995;6996;6997	6996		4	9606
VVVVILDKEHRPVEK	Unmodified	1759.0356	0.03560423	753	Q9UI95	MAD2L2	Mitotic spindle assembly checkpoint protein MAD2B	yes	yes	0	0	2	5	0					1	15.183	15.183	3	0.01218	7161	DP1145_15	83.087	61.773			0	2809	753	2630	4732	6998	6998		1	9606
VVYASATGASEPR	Unmodified	1306.6517	0.65172941	2	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	1	0	1					14.974	14.974	2	0.015724	6333	DP1145_11	86.189	54.659			0	2810	2	2631	4733	6999	6999		1	9606
VWDDGIIDPADTR	Unmodified	1471.6943	0.69432251	710	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	19.51	19.51	2	1.0347E-84	14799	DP1145_13	220.82	151.97			1255000000	2811	710	2632	4734;4735;4736;4737;4738	7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010	7006		11	9606
VWDISTVSSVNEAFGR	Unmodified	1765.8635	0.8635131	459	Q13610	PWP1	Periodic tryptophan protein 1 homolog	yes	yes	0	0	0	3	0			1			20.892	20.892	2	0.0064284	16904	DP1145_13	93.623	71.848			6714600	2812	459	2633	4739	7011	7011		1	9606
VYNVTQHAVGIVVNK	Unmodified	1639.9046	0.90459006	284	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					1	16.878	16.878	3	0.0013378	9868	DP1145_15	101.61	76.912			625310000	2813	284	2634	4740	7012	7012		1	9606
VYNYNHLMPTR	Oxidation (M)	1422.6714	0.671419	344	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	5	0					1	15.168	15.168	3	0.013222	7140	DP1145_15	71.555	45.431			116290000	2814	344	2635	4741	7013	7013	257	1	9606
VYNYNHLMPTR	Unmodified	1406.6765	0.67650438	344	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	16.506	16.506	3	0.024125	9113	DP1145_15	93.345	45.43			54332000	2815	344	2635	4742	7014	7014		0	9606
VYSTALSSFLTK	Unmodified	1315.7024	0.702368	663	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				19.978	19.978	2	0.037967	16319	DP1145_12	109.79	64.631			26374000	2816	663	2636	4743	7015	7015		0	9606
WDEMNILATYHPADKDYGLMK	Oxidation (M)	2526.1559	0.15593165	265	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	1	1	4	0				2		19.26	19.26	3;4	0.0030019	13994	DP1145_14	96.562	81.081			134280000	2817	265	2637	4744;4745	7016;7017	7016	202;203	0	9606
WDQTADQTPGATPK	Unmodified	1514.7001	0.70013617	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				15.467	15.467	2	2.2403000000000002E-42	8948	DP1145_12	196.24	152.59			6500900	2818	84	2638	4746	7018	7018		1	9606
WELLQQVDTSTR	Unmodified	1474.7416	0.74160705	13	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					19.643	19.643	2	0.00072517	13778	DP1145_11	125.68	80.084		+	406460000	2819	13	2639	4747	7019;7020	7019		2	9606
WKPGSLASHVK	Unmodified	1208.6666	0.66659162	130	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	4	0				1		14.887	14.887	3	0.023776	7164	DP1145_14	67.214	35.456			66232000	2820	130	2640	4748	7021	7021		1	9606
WLLLTGISAQQNR	Unmodified	1498.8256	0.82561145	408	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					20.7	20.7	2	0.01235	15176	DP1145_11	102.06	43.432			0	2821	408	2641	4749	7022	7022		1	9606
WMLAGRPHPTQK	Oxidation (M)	1436.7347	0.73468796	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					14.369	14.369	3	0.0016137	5542	DP1145_11	95.477	39.701			73705000	2822	441	2642	4750	7023	7023	339	1	9606
WMLAGRPHPTQK	Unmodified	1420.7398	0.73977334	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					14.862	14.862	3	0.039759	6307	DP1145_11	78.903	44.1			82754000	2823	441	2642	4751	7024	7024		1	9606
WQNNLLPSR	Unmodified	1126.5883	0.5883413	355	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	17.792	17.792	2	3.7352E-13	11074	DP1145_15	153.04	107.95			262530000	2824	355	2643	4752	7025;7026	7025		2	9606
WSPIASTLPELVQR	Unmodified	1595.8671	0.86714192	456	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	3	0			1			20.976	20.976	2	0.010653	16941	DP1145_13	90.653	44.889			0	2825	456	2644	4753	7027	7027		1	9606
WVGGPEIELIAIATGGR	Unmodified	1737.9414	0.94136949	292	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			23.454	23.454	2	0.0034977	20524	DP1145_13	131.06	63.808			6245800	2826	292	2645	4754	7028	7028		1	9606
YAPTEAQLNAVDALIDSMSLAK	Unmodified	2320.1621	0.16206289	171	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	3	0			1			23.892	23.892	2	0.0084491	21236	DP1145_13	98.552	74.038			2335200	2827	171	2646	4755	7029	7029		1	9606
YATALYSAASK	Unmodified	1144.5764	0.57643921	290	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	1	0	1					16.12	16.12	2	0.0072584	8053	DP1145_11	94.692	64.374			13817000	2828	290	2647	4756	7030;7031	7030		2	9606
YCAQDAFFQVK	Unmodified	1375.6231	0.62307182	440	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		18.96	18.96	2	0.00040577	13556	DP1145_14	123.21	92.521			98411000	2829	440	2648	4757	7032	7032		1	9606
YDGIILPGK	Unmodified	974.54368	0.54368251	381	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	5	0					1	17.982	17.982	2	9.469E-09	11441	DP1145_15	143.12	106.73			0	2830	381	2649	4758	7033	7033		1	9606
YDSAPATDGSGTALGWTVAWK	Unmodified	2153.0065	0.006548526	27	CON__Streptavidin			yes	yes	0	0	0	4.25	1.34	2	1	1	2	14	26.633	26.633	2;3	8.8017E-64	16813	DP1145_15	235.38	192.95		+	23303000000	2831	27	2650	4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775;4776;4777;4778	7034;7035;7036;7037;7038;7039;7040;7041;7042;7043;7044;7045;7046;7047;7048;7049;7050;7051;7052;7053;7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064;7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085;7086	7056		53	
YEDFSNLGTTHLLR	Unmodified	1664.8158	0.81583463	208	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		18.66	18.66	3	0.0034509	13108	DP1145_14	107.37	57.745			15364000	2832	208	2651	4779	7087	7087		1	9606
YEELQSLAGK	Unmodified	1136.5714	0.57135383	14	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3	0			1			16.98	16.98	2	0.02617	11089	DP1145_13	80.219	1.7026		+	169380000	2833	14	2652	4780	7088	7088		1	9606
YEELQVTVGR	Unmodified	1192.6088	0.60880197	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					17.261	17.261	2	0.00016164	10020	DP1145_11	114.97	59.292		+	98302000	2834	21	2653	4781	7089;7090	7089		2	9606
YEETVFYGLQYILNK	Unmodified	1878.9404	0.94036644	275	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	3	0			1			23.015	23.015	2	0.00069456	19907	DP1145_13	143.96	115.06			3896900	2835	275	2654	4782	7091	7091		1	9606
YEITFTLPPVHR	Unmodified	1471.7823	0.78234966	685	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	5	0					1	20.173	20.173	3	0.0058299	14681	DP1145_15	84.507	49.739			6509400	2836	685	2655	4783	7092	7092		1	9606
YELDYIL	Unmodified	927.45895	0.45894983	84	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				22.828	22.828	1	0.039721	20304	DP1145_12	77.72	26.147			4842200	2837	84	2656	4784	7093	7093		0	9606
YELISETGGSHDKR	Unmodified	1590.7638	0.76379906	437;649	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	0	1	4	0				1		14.566	14.566	3	0.0011039	6663	DP1145_14	120.9	85.004			11240000	2838	437;649	2657	4785	7094;7095	7094		2	9606
YENEHSFKK	Unmodified	1180.5513	0.55128709	26	CON__Q9C075;Q9C075	KRT23	Keratin, type I cytoskeletal 23	yes	no	0	0	1	3	0			1			17.133	17.133	2	0.00023072	11170	DP1145_13	119.17	32.341		+	0	2839	26	2658	4786	7096	7096		1	9606
YESLTDPSKLDSGK	Unmodified	1538.7464	0.74641766	143;138;519	P08238;Q58FF7;P07900;Q58FF8	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2	no	no	0	0	1	3	0			2			16.135	16.135	2;3	0.0079576	9697	DP1145_13	101.32	75.429			163100000	2840	143;138;519	2659	4787;4788	7097;7098;7099;7100	7098		4	9606
YFILPDSLPLDTLLVDVEPK	Unmodified	2286.2399	0.23990251	363	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	0	5	0					1	25.175	25.175	2	0.015834	21558	DP1145_15	103.4	75.727			1531100	2841	363	2660	4789	7101;7102	7101		2	9606
YFPTQALNFAFK	Unmodified	1445.7343	0.73433683	122;168	P05141;Q9H0C2;P12236;P12235	SLC25A5;SLC25A31;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	2.33	1.25	1	1		1		21.344	21.344	2	0.00043019	17171	DP1145_14	128.36	89.057			134940000	2842	122;168	2661	4790;4791;4792	7103;7104;7105;7106;7107;7108;7109;7110;7111	7110		9	9606
YGALALQEIFDGIQPK	Unmodified	1761.9301	0.93013611	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				22.674	22.674	2	0.0015026	20148	DP1145_12	147.62	107.61			1408900	2843	322	2662	4793	7112;7113	7113		2	9606
YGDGGSSFQSTTGHCVHMR	Oxidation (M)	2098.8585	0.85852086	327	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	3	0			1			14.155	14.155	3	0.014382	6574	DP1145_13	79.013	64.22			0	2844	327	2663	4794	7114	7114	246	1	9606
YGDGGSTFQSTTGHCVHMR	Oxidation (M)	2112.8742	0.87417092	236	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3.67	0.471			1	2		14.37	14.37	3;4	0.00073821	6397	DP1145_14	125.41	106.62			67483000	2845	236	2664	4795;4796;4797	7115;7116;7117	7116	184	2	9606
YGDGGSTFQSTTGHCVHMR	Unmodified	2096.8793	0.8792563	236	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			1			15.196	15.196	3	3.4756E-08	8087	DP1145_13	163.64	154.03			0	2846	236	2664	4798	7118	7118		1	9606
YGDSEFTVQSTTGHCVHMR	Unmodified	2210.9473	0.94733586	313	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		16.154	16.154	3	0.0013951	9103	DP1145_14	110.56	89.513			17183000	2847	313	2665	4799	7119	7119		1	9606
YGINTDPPK	Unmodified	1003.4975	0.4974606	782	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	15.299	15.299	2	0.00015814	7401	DP1145_15	120.87	68.613			21498000	2848	782	2666	4800	7120	7120		1	9606
YGINTTDIFQTVDLWEGK	Unmodified	2099.0211	0.021135958	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					2	23.424	23.424	2;3	0	19175	DP1145_15	356.3	285.22			39664000	2849	253	2667	4801;4802	7121;7122;7123	7121		3	9606
YGPPPSYPNLK	Unmodified	1231.6237	0.62372375	452	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2	0		1				16.876	16.876	2	0.006237	11351	DP1145_12	96.034	64.163			19591000	2850	452	2668	4803	7124	7124		1	9606
YGQFSGLNPGGR	Unmodified	1251.5996	0.59963426	350	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	4	0				1		17.26	17.26	2	0.00015225	10889	DP1145_14	154.01	96.153			28985000	2851	350	2669	4804	7125	7125		1	9606
YGQFSGLNPGGRPITPPR	Unmodified	1912.9908	0.9907793	350	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	1	4	0				1		17.459	17.459	3	0.012425	11254	DP1145_14	75.968	40.311			103850000	2852	350	2670	4805	7126	7126		1	9606
YGVDLIR	Unmodified	834.45995	0.45995289	543	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	4	0				1		17.659	17.659	2	0.011448	11691	DP1145_14	101.21	54.548			28420000	2853	543	2671	4806	7127	7127		1	9606
YGVNPGPIVGTTR	Unmodified	1329.7041	0.70409934	267	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			17.088	17.088	2	0.036039	11158	DP1145_13	59.57	20.816			185060000	2854	267	2672	4807	7128	7128		1	9606
YICDNQDTISSK	Unmodified	1442.6348	0.63475872	12	CON__P02769			yes	yes	0	0	0	3.5	0.5			1	1		15.161	15.161	2	9.5521E-33	8046	DP1145_13	190.88	94.55		+	182790000	2855	12	2673	4808;4809	7129;7130;7131	7129		3	9606
YIDDEDLDR	Unmodified	1152.4935	0.49349744	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3	0			1			16.394	16.394	2	0.00044338	9911	DP1145_13	118.74	71.749			246660000	2856	665	2674	4810	7132	7132		1	9606
YIDQEELNK	Unmodified	1150.5506	0.55061839	143;138;519	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	3.5	0.5			1	1		15.576	15.576	2	6.5472E-16	8007	DP1145_14	161.68	83.941			321720000	2857	143;138;519	2675	4811;4812	7133;7134	7134		1	9606
YIQELWR	Unmodified	1006.5236	0.52361577	343	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	4	0				1		18.66	18.66	2	0.00016596	13100	DP1145_14	138.85	67.133			21254000	2858	343	2676	4813	7135	7135		0	9606
YISPDQLADLYK	Unmodified	1424.7187	0.71874635	133	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3	0			1			20.18	20.18	2	0.0089541	15849	DP1145_13	88.681	54.148			138460000	2859	133	2677	4814	7136	7136		1	9606
YKITDIIGKEEGIGPENLR	Unmodified	2144.1477	0.14773345	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					19.16	19.16	3	0.0091453	12808	DP1145_11	142.72	106.59			27010000	2860	441	2678	4815	7137	7137		0	9606
YLAEVAAGDDK	Unmodified	1150.5506	0.55061839	385	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	3	0			1			15.437	15.437	2	0.0072588	9036	DP1145_13	94.692	46.823			295800000	2861	385	2679	4816	7138	7138		1	9606
YLAEVATGEK	Unmodified	1079.5499	0.5498901	348	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	1	0	1					15.594	15.594	2	0.0045056	7299	DP1145_11	102.62	54.964			13809000	2862	348	2680	4817	7139	7139		1	9606
YLDGLTAER	Unmodified	1036.5189	0.51892433	21	P35908;CON__P35908v2;CON__P35908	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0.816	1	1	1			17.173	17.173	2	0.0001616	11879	DP1145_12	127.02	55.072		+	421490000	2863	21	2681	4818;4819;4820	7140;7141;7142	7141		2	9606
YLGYLEQLLR	Unmodified	1266.6972	0.69722304	7	CON__P02662			yes	yes	0	0	0	2.67	1.25	1		1	1		21.97	21.97	2	2.6465E-17	16969	DP1145_11	195.81	140.44		+	216130000	2864	7	2682	4821;4822;4823	7143;7144;7145;7146;7147;7148	7143		6	
YLKDVTLQK	Unmodified	1106.6336	0.63356015	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	15.012	15.012	2	0.00016112	6917	DP1145_15	123.21	72.505			85124000	2865	198	2683	4824	7149	7149		1	9606
YLMEEDEDAYKK	Oxidation (M)	1548.6654	0.66539015	283	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	1	4	0				2		14.887	14.887	2;3	8.6466E-05	7056	DP1145_14	131.83	109.25			262300000	2866	283	2684	4825;4826	7150;7151;7152	7150	228	3	9606
YLMEEDEDAYKK	Unmodified	1532.6705	0.67047553	283	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	4	0				1		16.057	16.057	3	6.0524E-10	8982	DP1145_14	170.89	124.09			0	2867	283	2684	4827	7153	7153		1	9606
YLSGADAGVDR	Unmodified	1122.5306	0.53055165	665	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	4	0.816			1	1	1	15.314	15.314	2	2.9611E-05	7335	DP1145_15	136.99	57.05			805510000	2868	665	2685	4828;4829;4830	7154;7155;7156	7156		3	9606
YLSQQWAK	Unmodified	1022.5185	0.5185304	175	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		16.301	16.301	2	1.5281E-09	9353	DP1145_14	149.4	65.155			244650000	2869	175	2686	4831	7157	7157		0	9606
YLSSVSSQETQGGPLAPMTGTIEK	Oxidation (M)	2496.2054	0.20538427	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.67	1.25	2		2	2		17.827	17.827	2;3	6.2284E-32	11067	DP1145_11	178.02	143.53			839860000	2870	647	2687	4832;4833;4834;4835;4836;4837	7158;7159;7160;7161;7162;7163	7159	486	6	9606
YLSSVSSQETQGGPLAPMTGTIEK	Unmodified	2480.2105	0.21046965	647	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.33	0.943	1		2			19.073	19.073	2;3	7.31E-221	14236	DP1145_13	342.97	270.99			306710000	2871	647	2687	4838;4839;4840	7164;7165;7166;7167	7165		4	9606
YLTVAAIFR	Unmodified	1052.6019	0.6018661	464	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	0	0	2	0.816	1	1	1			20.559	20.559	2	0.0061221	14998	DP1145_11	101.28	34.249			46879000	2872	464	2688	4841;4842;4843	7168;7169;7170	7168		3	9606
YLTVAAVFR	Unmodified	1038.5862	0.58621603	394;137;113	P04350;P07437;P68371	TUBB4A;TUBB;TUBB4B	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain	no	no	0	0	0	3.33	1.25		1	1		1	19.683	19.683	2	1.5861E-36	15122	DP1145_13	186.67	143.76			1035499999.9999999	2873	113;137;394	2689	4844;4845;4846	7171;7172;7173;7174	7172		3	9606
YLYEIAR	Unmodified	926.48617	0.48616764	12	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	2.33	1.25	1	1		1		17.365	17.365	2	3.9599000000000005E-31	10114	DP1145_11	170.96	0		+	386990000	2874	12	2690	4847;4848;4849	7175;7176;7177;7178	7175		4	9606
YLYLTPQDYK	Unmodified	1302.6496	0.64960415	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.76	18.76	2	3.9807E-70	12317	DP1145_11	209.87	155.26			400730000	2875	441	2691	4850	7179;7180	7179		2	9606
YLYLTPQDYKR	Unmodified	1458.7507	0.75071518	441	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.461	17.461	2	2.6428E-68	10214	DP1145_11	195.32	156.02			48743000	2876	441	2692	4851	7181;7182	7181		2	9606
YMACCLLYR	Unmodified	1248.5454	0.54535555	393;547;662	P68363;P68366;A6NHL2;Q71U36;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	0	0	3	0			1			18.46	18.46	2	2.1221E-06	13445	DP1145_13	138.85	126.27			116880000	2877	393;547;662	2693	4852	7183	7183		1	9606
YMACCLLYR	Oxidation (M)	1264.5403	0.54027017	393;547;662	P68363;P68366;A6NHL2;Q71U36;Q9BQE3	TUBA1B;TUBA4A;TUBAL3;TUBA1A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-1C chain	no	no	0	1	0	3	0			1			17.778	17.778	2	0.029028	12154	DP1145_13	107.43	84.649			416000000	2878	393;547;662	2693	4853	7184	7184	293	0	9606
YMPQNPHIIATK	Oxidation (M)	1427.7231	0.72312022	504	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	1	0	3	0			1			14.838	14.838	3	0.033658	7676	DP1145_13	56.205	24.608			7992600	2879	504	2694	4854	7185	7185	384	1	9606
YNEQHVPGSPFTAR	Unmodified	1601.7587	0.7586541	202	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					16.149	16.149	3	0.0073849	8078	DP1145_11	82.529	50.462			0	2880	202	2695	4855	7186	7186		1	9606
YNGVFQECCQAEDK	Unmodified	1746.6978	0.69776968	12	CON__P02769			yes	yes	0	0	0	3	0			1			16.794	16.794	2	0.0015728	10381	DP1145_13	141.71	110.89		+	14433000	2881	12	2696	4856	7187	7187		1	9606
YNHPKPNLLYQK	Unmodified	1513.8041	0.80414773	524	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	4.5	0.5				1	1	14.787	14.787	3	0.0032241	6482	DP1145_15	107.11	72.215			29432000	2882	524	2697	4857;4858	7188;7189	7189		1	9606
YNIIPVLSDILQESVK	Unmodified	1830.0139	0.013865735	752	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	3	0			1			24.36	24.36	2	0.0033588	21858	DP1145_13	101.53	69.203			2268600	2883	752	2698	4859	7190	7190		1	9606
YNILGTNTIMDK	Unmodified	1381.6912	0.69115139	409	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	0		1				19.184	19.184	2	0.00091515	14869	DP1145_12	123.96	88.805			9561800	2884	409	2699	4860	7191	7191		1	9606
YNPNVLPVQCTGK	Unmodified	1488.7395	0.73949856	120	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	2.5	1.5	1			1		16.963	16.963	2	0.0018871	9610	DP1145_11	114.89	78.223			45845000	2885	120	2700	4861;4862	7192;7193	7192		1	9606
YPENFFLLR	Unmodified	1197.6182	0.61824444	350;252;351	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3	0.816		1	1	1		20.929	20.929	2	1.5993E-05	16503	DP1145_14	125.81	54.435			420060000	2886	252;350;351	2701	4863;4864;4865	7194;7195;7196;7197;7198;7199	7198		6	9606
YPHVEDYRR	Unmodified	1233.5891	0.58906958	342	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	1	4	0				1		14.587	14.587	3	0.00052366	6665	DP1145_14	115.49	85.176			12349000	2887	342	2702	4866	7200	7200		1	9606
YPMAVGLNK	Oxidation (M)	1007.511	0.51100218	786	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	0	5	0					1	15.638	15.638	2	0.0039264	7901	DP1145_15	115.46	48.66			63358000	2888	786	2703	4867	7201	7201	551	1	9606
YQAVTATLEEK	Unmodified	1251.6347	0.63468237	260	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	2.5	1.5	1			1		16.39	16.39	2	9.5654E-08	9445	DP1145_14	145.9	68.163			206030000	2889	260	2704	4868;4869	7202;7203	7203		2	9606
YQILPLHSQIPR	Unmodified	1463.8249	0.82488317	424	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					17.861	17.861	3	0.015344	10940	DP1145_11	78.548	56.056			29115000	2890	424	2705	4870	7204	7204		1	9606
YQQGDFGYCPR	Unmodified	1389.5772	0.57718426	391	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	4	0				1		16.859	16.859	2	5.0141E-09	10348	DP1145_14	150.36	136.06			61912000	2891	391	2706	4871	7205	7205		0	9606
YQTLSLK	Unmodified	851.47527	0.4752686	765	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	2	0		1				16.575	16.575	2	0.0014713	10308	DP1145_12	117.93	41.087			16509000	2892	765	2707	4872	7206	7206		1	9606
YSGELSGIR	Unmodified	980.49271	0.49270958	720	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3.5	0.5			1	1		16.087	16.087	2	4.4865E-23	9480	DP1145_13	173.68	111.68			175580000	2893	720	2708	4873;4874	7207;7208;7209	7208		3	9606
YSLDPENPTK	Unmodified	1162.5506	0.55061839	198	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	4.5	0.5				1	1	16.636	16.636	2	4.4599E-12	10000	DP1145_14	148.52	121.83			262210000	2894	198	2709	4875;4876	7210;7211;7212;7213	7210		4	9606
YSLQYYMGLAEELVR	Oxidation (M)	1849.892	0.89203604	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1.25	0.433	3	1				22.397	22.397	2;3	0.0020887	17827	DP1145_11	142.12	93.036			9232500	2895	164	2710	4877;4878;4879;4880	7214;7215;7216;7217;7218;7219;7220;7221	7217	149	8	9606
YSLQYYMGLAEELVR	Unmodified	1833.8971	0.89712142	164	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	0			1			24.154	24.154	2	0.0016281	21568	DP1145_13	126.1	86.922			3974500	2896	164	2710	4881	7222;7223	7222		2	9606
YSPSQNSPIHHIPSR	Unmodified	1718.8489	0.84886609	735	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	2	0		1				14.667	14.667	4	0.00070576	7811	DP1145_12	130.24	87.427			9044300	2897	735	2711	4882	7224;7225	7224		2	9606
YSQVLANGLDNK	Unmodified	1320.6674	0.66737948	360	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	16.604	16.604	2	0.014403	9278	DP1145_15	82.494	44.938			81808000	2898	360	2712	4883	7226	7226		1	9606
YSSAGTVEFLVDSK	Unmodified	1501.73	0.73003931	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.282	19.282	2	0.0012987	14639	DP1145_13	126.76	74.51			569500000	2899	123	2713	4884	7227;7228	7227		2	9606
YSSAGTVEFLVDSKK	Unmodified	1629.825	0.82500233	123	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.33	0.943	1		2			18.006	18.006	2;3	0.00066913	12555	DP1145_13	135.02	60.487			499530000	2900	123	2714	4885;4886;4887	7229;7230;7231	7231		3	9606
YSVDIPLDK	Unmodified	1048.5441	0.54407645	344	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	18.192	18.192	2	4.6388E-06	11785	DP1145_15	129.42	92.262			74442000	2901	344	2715	4888	7232	7232		1	9606
YTAAVPYR	Unmodified	939.48142	0.48141661	744	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	1	0	1					15.646	15.646	2	0.00015739	7381	DP1145_11	138.62	87.044			4147600	2902	744	2716	4889	7233	7233		0	9606
YTIHSQLEHLQSK	Unmodified	1582.8104	0.81035532	676	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	0	5	0					1	15.455	15.455	3	1.3425E-07	7564	DP1145_15	168.82	137.93			23330000	2903	676	2717	4890	7234	7234		1	9606
YVASYLLAALGGNSSPSAK	Unmodified	1867.968	0.96797818	126	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					2	21.453	21.453	2;3	3.6252000000000003E-131	16445	DP1145_15	238.88	177.46			81489000	2904	126	2718	4891;4892	7235;7236;7237;7238;7239;7240;7241	7238		7	9606
YVDIGVLASDLQR	Unmodified	1447.7671	0.76709352	50	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				20.777	20.777	2	0.00015321	17474	DP1145_12	141.1	86.031			7259500	2905	50	2719	4893	7242	7242		0	9606
YVELFLNSTAGASGGAYEHR	Unmodified	2141.0178	0.017781914	236	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			1			18.754	18.754	3	0.0013041	13808	DP1145_13	89.344	57.882			38170000	2906	236	2720	4894	7243	7243		1	9606
YVIYIER	Unmodified	954.51747	0.51746776	340	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	17.692	17.692	2	0.00021479	11085	DP1145_15	123.99	74.677			82628000	2907	340	2721	4895	7244;7245	7244		2	9606
YVKPTEPVTDYR	Unmodified	1466.7405	0.74054442	686	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	1	3	0			1			15.238	15.238	2	0.013323	8256	DP1145_13	101.97	52.556			37458000	2908	686	2722	4896	7246	7246		1	9606
YVLTGRYDSAPATDGSGTALGWTVAWK	Unmodified	2842.3926	0.39260819	27	CON__Streptavidin			yes	yes	0	0	1	5	0					1	20.708	20.708	3	4.7095E-08	15489	DP1145_15	108.19	86.844		+	11882000	2909	27	2723	4897	7247;7248	7247		2	
YYGLQILENVIK	Unmodified	1451.8024	0.8024164	46	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				22.58	22.58	2	0.012399	20031	DP1145_12	84.615	64.584			1441700	2910	46	2724	4898	7249;7250;7251	7250		3	9606
YYTPTISR	Unmodified	999.50255	0.50254598	298	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	5	0					1	16.286	16.286	2	0.015893	8862	DP1145_15	99.375	38.414			19055000	2911	298	2725	4899	7252	7252		1	9606
YYVTIIDAPGHR	Unmodified	1403.7197	0.7197494	392	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	2.75	1.09	1		2	1		17.418	17.418	2;3	4.2197E-11	11617	DP1145_13	158.76	117.77			357800000	2912	392	2726	4900;4901;4902;4903	7253;7254;7255;7256;7257;7258;7259;7260	7256		8	9606
