Sequence	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 4	Fraction 5	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Intensity	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAGAASGLPGPVAQGLK	Acetyl (Protein N-term)	1789.9686	0.96864688	635	Q96P70	IPO9	Importin-9	yes	yes	1	0	0	2	0		1				20.595	20.595	2	0.010798	17227	DP1145_7	92.19	67.846			0	0	635	0	0	0	0		1	9606
AAAAELSLLEK	Acetyl (Protein N-term)	1156.634	0.63395409	58	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	1	0	0	5	0					1	22.016	22.016	2	3.1109E-05	17483	DP1145_10	128.27	85.187			15183000	1	58	1	1	1	1		1	9606
AAAPAPEEEMDECEQALAAEPK	Oxidation (M)	2372.0148	0.014806305	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	1	0	3	0			1			17.323	17.323	2	5.5741E-10	11758	DP1145_8	133.48	110.3			14531000	2	218	2	2	2	2	213	1	9606
AAAVAAAGAGEPQSPDELLPK	Acetyl (Protein N-term)	2004.0164	0.016384931	715	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	1	0	0	5	0					1	21.153	21.153	2	0.021176	16231	DP1145_10	69.92	35.737			0	3	715	3	3	3	3		1	9606
AADPPAENSSAPEAEQGGAE	Unmodified	1896.7973	0.79734361	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.318	15.318	2	9.8839E-64	7723	DP1145_9	228.17	209.2			58531000	4	390	4	4	4	4		1	9606
AADSLQQNLQR	Unmodified	1242.6317	0.63166267	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	3.5	0.5			1	1		15.549	15.549	2	4.3589E-112	7931	DP1145_9	222.18	178.76			69219000	5	508	5	5;6	5;6	6		2	9606
AADTQVSETLKR	Acetyl (Protein N-term)	1359.6994	0.69940789	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	1	1	0	1					16.405	16.405	2	0.0068354	8308	DP1145_6	83.862	28.778			0	6	608	6	7	7	7		1	9606
AAECNIVVTQPR	Unmodified	1356.682	0.68198369	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					15.718	15.718	2	0.042074	7522	DP1145_6	69.01	10.381			20198000	7	427	7	8	8	8		1	9606
AAELIANSLATAGDGLIELR	Unmodified	1997.0793	0.079319539	238	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				2		22.067	22.067	2;3	3.3910999999999997E-19	17798	DP1145_9	182.02	128.76			37944000	8	238	8	9;10	9;10;11	10		3	9606
AAESLADPTEYENLFPGLK	Unmodified	2064.0052	0.0051515425	244	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1	0	1					22.039	22.039	2	1.5849E-20	16980	DP1145_6	143.56	110.37			0	9	244	9	11	12	12		1	9606
AAESPDQKDTDGGPKEEESPV	Unmodified	2184.9659	0.9658655	316	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	2	1	0	1					14.645	14.645	3	0.040486	5589	DP1145_6	58.29	41.984			8314200	10	316	10	12	13	13		0	9606
AAETQTLNFGPEWLR	Acetyl (Protein N-term)	1773.8686	0.86859848	547	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	1	0	0	2	0		1				23.301	23.301	2	0.0041977	21269	DP1145_7	91.858	46.029			2814500	11	547	11	13	14	14		1	9606
AAFDDAIAELDTLSEESYK	Unmodified	2086.9583	0.95826093	358	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	4	0				1		23.3	23.3	2	2.6099E-12	19585	DP1145_9	142.1	115.99			3152500	12	358	12	14	15;16	16		2	9606
AAGPASPPEEDPERTK	Unmodified	1650.7849	0.78492843	632	Q96KM6	ZNF512B	Zinc finger protein 512B	yes	yes	0	0	1	2	0		1				13.873	13.873	3	0.038198	7121	DP1145_7	73.758	46.624			3311200	13	632	13	15	17	17		1	9606
AAGTAAALAFLSQESR	Acetyl (Protein N-term)	1604.8158	0.81583463	81	O75607	NPM3	Nucleoplasmin-3	yes	yes	1	0	0	2.5	1.12	1	1	1	1		23.661	23.661	2	7.9599E-279	20059	DP1145_9	267.43	191.2			20019000	14	81	14	16;17;18;19	18;19;20;21;22;23	22		6	9606
AAGTLYTYPENWR	Acetyl (Protein N-term)	1582.7416	0.74160705	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1	0	1					21.569	21.569	2	0.0024351	16314	DP1145_6	85.533	62.892			4966200	15	218	15	20	24;25	25		2	9606
AAGVEAAAEVAATEIK	Acetyl (Protein N-term)	1541.7937	0.7937022	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	3	1		1		1		22.751	22.751	2	0.0021778	18847	DP1145_9	83.137	47.229			26846000	16	307	16	21;22	26;27	27		2	9606
AAGVNVEPFWPGLFAK	Unmodified	1701.8879	0.88787736	117	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	5	0					1	22.419	22.419	2	8.929800000000001E-75	17964	DP1145_10	232.56	221.9			434270000	17	117	17	23	28;29	28		2	9606
AALEALLPYTER	Unmodified	1345.7242	0.72416608	432	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					19.955	19.955	2	3.8221E-05	14051	DP1145_6	123.86	67.134			21595000	18	432	18	24	30;31	30		2	9606
AALGPSSQNVTEYVVR	Acetyl (Protein N-term)	1731.8792	0.87916317	242	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	1	0	0	3	0			1			20.63	20.63	2	0.037128	16575	DP1145_8	65.295	28.616			0	19	242	19	25	32	32		1	9606
AALGVLESDLPSAVTLLK	Acetyl (Protein N-term)	1838.0401	0.040080486	592	Q8NEJ9	NGDN	Neuroguidin	yes	yes	1	0	0	4	0				1		25.65	25.65	2	5.8406E-05	22780	DP1145_9	155.86	125.65			3149600	20	592	20	26	33;34	33		2	9606
AALSALESFLK	Unmodified	1148.6441	0.64412484	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1.5	0.5	1	1				21.656	21.656	2	1.0051000000000001E-27	16224	DP1145_6	166.09	124.66			166520000	21	401	21	27;28	35;36;37	35		2	9606
AANPVDFLSK	Unmodified	1060.5553	0.55530983	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2.5	0.5		1	1			18.61	18.61	2	0.017024	13729	DP1145_8	87.149	25.042			266940000	22	575	22	29;30	38;39	39		2	9606
AAPEEPQQRPPEAVAAAPAGTTSSR	Unmodified	2488.2306	0.23062824	630	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3.5	0.5			1	1		15.268	15.268	3	8.2907E-05	8431	DP1145_8	109.84	87.942			143000000	23	630	23	31;32	40;41;42	40		3	9606
AAPIPQGFSCLSR	Acetyl (Protein N-term)	1444.7133	0.71328381	657	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	1	0	0	2	0		1				15.435	15.435	2	0.010284	9384	DP1145_7	68.016	14.419			83787000	24	657	24	33	43;44	44		2	9606
AAPSEVAAIAPGEGDGGGGGFGSWLDGR	Acetyl (Protein N-term)	2599.1939	0.19390838	633	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	1	0	0	4	0				1		23.42	23.42	3	1.5605E-06	19744	DP1145_9	72.082	49.147			1411500	25	633	25	34	45	45		1	9606
AASADSTTEGTPADGFTVLSTK	Unmodified	2126.0015	0.0015227276	76	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		18.623	18.623	2	6.488200000000001E-159	12748	DP1145_9	230.57	188.48			28003000	26	76	26	35	46;47	46		2	9606
AASDIWKPVLSIDTEPR	Unmodified	1896.9945	0.99452728	629	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	1	2	0		1				19.845	19.845	3	0.00040125	16140	DP1145_7	98.508	81.147			5893300	27	629	27	36	48	48		1	9606
AASITSEVFNK	Unmodified	1165.5979	0.59790293	783	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	2	0		1				17.299	17.299	2	2.7999E-08	12259	DP1145_7	126.24	75.05			10650000	28	783	28	37	49	49		0	9606
AASVHTVGEDTEETPHR	Unmodified	1834.8446	0.84456858	645	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	2	0.707	1	2	1			13.498	13.498	3;4	0.0016829	6240	DP1145_7	86.548	57.92			3068900	29	645	29	38;39;40;41	50;51;52;53;54;55;56	52		7	9606
AATALLEAGLAR	Acetyl (Protein N-term)	1197.6717	0.67173657	601	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	1	0	0	5	0					1	22.747	22.747	2	0.0022327	18547	DP1145_10	86.882	44.543			1909900	30	601	30	42	57	57		1	9606
AATASAGAGGIDGKPR	Acetyl (Protein N-term)	1440.7321	0.732105	420	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	1	0	1	2.5	1.5	1			1		15.123	15.123	2	1.3821E-46	7387	DP1145_9	160.86	139.11			154450000	31	420	31	43;44	58;59;60;61	60		4	9606
AATGEEVSAEDLGGADLHCR	Unmodified	2056.912	0.91199621	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		16.855	16.855	2;3	0	10974	DP1145_8	297.03	244.96			2551600000	32	700	32	45;46;47;48	62;63;64;65;66;67;68;69;70;71	68		10	9606
AATLAQELEK	Unmodified	1072.5764	0.57643921	473	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	2	0		1				16.975	16.975	2	1.0299E-06	11719	DP1145_7	138.4	65.606			0	33	473	33	49	72	72		1	9606
AAVEEGIVLGGGCALLR	Unmodified	1683.8978	0.89779012	152	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			20.024	20.024	2	0.0028045	15771	DP1145_8	113.69	65.247			17022000	34	152	34	50	73	73		1	9606
AAVENLPTFLVELSR	Unmodified	1657.9039	0.90392136	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	3	1		1		1		22.815	22.815	2	7.920099999999999E-46	20398	DP1145_7	215.72	161.66			42526000	35	478	35	51;52	74;75;76;77;78	75		5	9606
AAVGEEKDINTFVGTPVEK	Unmodified	2003.0211	0.021135958	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					17.454	17.454	3	5.7294E-38	9981	DP1145_6	165.66	147.48			29118000	36	276	36	53	79	79		0	9606
AAVIGDVIR	Unmodified	912.53927	0.53926584	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				17.216	17.216	2	4.9267E-06	12100	DP1145_7	138.83	90.264			96358000	37	709	37	54	80	80		1	9606
AAVLQQVLER	Acetyl (Protein N-term)	1167.6612	0.66117189	163	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1.5	0.5	1	1				23.508	23.508	2	1.232E-07	21506	DP1145_7	138.4	102.95			13998000	38	163	38	55;56	81;82;83;84	83		4	9606
AAVPSGASTGIYEALELR	Unmodified	1803.9367	0.93667805	141;125	P09104;P13929;P06733	ENO2;ENO3;ENO1	Gamma-enolase;Beta-enolase;Alpha-enolase	no	no	0	0	0	3	0			1			20.425	20.425	2	0.011575	16437	DP1145_8	84.718	32.439			101940000	39	141;125	39	57	85	85		1	9606
AAVVTSPPPTTAPHK	Unmodified	1472.7987	0.798728	245	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	2	0		1				14.08	14.08	3	3.2134E-17	7301	DP1145_7	151.7	122.34			0	40	245	40	58	86	86		1	9606
AAYFGIYDTAK	Unmodified	1218.5921	0.59208927	114	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	4	0				1		18.723	18.723	2	4.5269E-28	12964	DP1145_9	169.44	138.87			220180000	41	114	41	59	87	87		1	9606
AAYFGVYDTAK	Unmodified	1204.5764	0.57643921	162	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	5	0					1	18.048	18.048	2	0.022931	11752	DP1145_10	77.192	45.963			27565000	42	162	42	60	88	88		1	9606
ACQSIYPLHDVFVR	Unmodified	1703.8454	0.84536062	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.823	18.823	3	0.0021669	13207	DP1145_9	97.86	85.368			362820000	43	341	43	61	89	89		1	9606
ADATNVNNWHWTER	Unmodified	1712.7655	0.76553039	96	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		17.602	17.602	3	0.0010652	11075	DP1145_9	136.93	117.69			16920000	44	96	44	62	90	90		1	9606
ADEAYLIGR	Unmodified	1006.5084	0.50835964	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			17.299	17.299	2	1.7293E-11	11565	DP1145_8	145.34	86.424			189010000	45	158	45	63;64	91;92	92		2	9606
ADFAQACQDAGVR	Unmodified	1407.6201	0.62011171	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.374	16.374	2	1.2601999999999998E-32	10793	DP1145_7	163.84	152.69			1036599999.9999999	46	158	46	65;66;67;68;69	93;94;95;96;97;98	95		6	9606
ADGELNVDSLITR	Acetyl (Protein N-term)	1443.7205	0.72053726	352	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	4	0				1		21.917	21.917	2	1.4637E-140	17574	DP1145_9	231.07	194.4			131590000	47	352	47	70	99;100;101	100		3	9606
ADGQVAELLLR	Acetyl (Protein N-term)	1225.6667	0.6666512	765	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	1	0	0	3	0			1			22.788	22.788	2	0.0040066	19771	DP1145_8	99.788	49.085			18145000	48	765	48	71	102;103	102		2	9606
ADHSFSDGVPSDSVEAAK	Acetyl (Protein N-term)	1859.8174	0.81735077	648	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	1	0	0	3	0			1			17.423	17.423	2	0.00020056	11954	DP1145_8	118.73	82.046			72962000	49	648	49	72	104	104		1	9606
ADIGVAMGIAGSDVSK	Oxidation (M)	1505.7396	0.73955814	112;167	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	1	0	5	0					1	17.026	17.026	2	0.0047645	10261	DP1145_10	89.629	59.862			14187000	50	112;167	50	73	105	105	82	1	9606
ADKDYHFKVDNDENEHQLSLR	Unmodified	2572.1942	0.19424273	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4.09	0.514			1	8	2	15.981	15.981	2;3;4;5	1.3046000000000001E-141	8612	DP1145_9	217.32	188.35			17843000000	51	127	51	74;75;76;77;78;79;80;81;82;83;84	106;107;108;109;110;111;112;113;114;115;116;117;118	118		12	9606
ADKQHVLDMLFSAFEK	Oxidation (M)	1893.9295	0.92948418	170	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	1	1	4	0				1		20.618	20.618	3	0.034734	15697	DP1145_9	72.187	35.895			17370000	52	170	52	85	119	119	176	1	9606
ADLDKLNIDSIIQR	Acetyl (Protein N-term)	1654.889	0.88899957	251	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	1	0	1	3.5	1.5	1			2	1	21.576	21.576	2;3	5.942899999999999E-124	17044	DP1145_9	222.73	162.66			803460000	53	251	53	86;87;88;89	120;121;122;123;124;125	122		6	9606
ADLEMQIESLTEELAYLK	Oxidation (M)	2111.0344	0.03440276	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	0	3	0			1			24.892	24.892	2	4.2966E-49	22672	DP1145_8	173.59	112.11		+	1417800	54	15	54	90	126;127;128	126	11	3	9606
ADLEMQIESLTEELAYLKK	Oxidation (M)	2239.1294	0.12936578	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	1	1	3	0			1			23.138	23.138	3	2.5903E-27	20217	DP1145_8	163	136.45		+	20604000	55	15	55	91	129	129	11	1	9606
ADLFPILMR	Unmodified	1074.5896	0.58958685	84	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					21.625	21.625	2	0.023442	16384	DP1145_6	87.754	59.58			5256600	56	84	56	92	130	130		1	9606
ADLINNLGTIAK	Unmodified	1241.698	0.69795133	136;132;521	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2	0		1				18.996	18.996	2	3.7546E-05	14811	DP1145_7	123.96	37.821			110310000	57	132;136;521	57	93	131;132	131		2	9606
ADLLGSILSSMEKPPSLGDQETR	Acetyl (Protein N-term);Oxidation (M)	2501.2319	0.23193337	77	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	1	1	1	4	0				1		23.096	23.096	3	0.0027616	19289	DP1145_9	61.304	35.298			1872100	58	77	58	94	133	133	63	1	9606
ADLVMSFVNMVER	2 Oxidation (M)	1541.7218	0.72179959	237	Q7Z5Y6;P34820	BMP8A;BMP8B	Bone morphogenetic protein 8A;Bone morphogenetic protein 8B	yes	no	0	2	0	1	0	1					19.23	19.23	2	0.026226	12678	DP1145_6	56.632	24.761			6931000	59	237	59	95	134	134	224;225	0	9606
ADQLYLENIDEFVTDQNK	Acetyl (Protein N-term)	2196.0223	0.02225817	487	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	1	0	0	3	0			1			24.342	24.342	2	0.020704	21981	DP1145_8	58.116	28.009			2798000	60	487	60	96	135	135		1	9606
ADRDESSPYAAMLAAQDVAQR	Oxidation (M)	2280.0441	0.044073019	359	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	1	1	5	0					1	17.343	17.343	3	0.0025806	10582	DP1145_10	99.93	68.974			83693000	61	359	61	97	136	136	311	1	9606
ADVEEEFLAFR	Unmodified	1324.6299	0.62993134	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.062	21.062	2	0.0195	17989	DP1145_7	80.219	56.899			47795000	62	276	62	98	137	137		1	9606
ADVEEEFLAFRK	Unmodified	1452.7249	0.72489436	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				19.368	19.368	3	0.0013793	15269	DP1145_7	107.11	73.331			71656000	63	276	63	99	138	138		0	9606
ADVEEEFLALR	Unmodified	1290.6456	0.6455814	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				20.763	20.763	2	6.3899E-16	17459	DP1145_7	137.05	108.96			39933000	64	276	64	100	139	139		0	9606
ADVFHAYLSLLK	Unmodified	1375.75	0.7499869	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	0	1					21.625	21.625	2	0.0017901	16449	DP1145_6	88.134	41.744			6742900	65	566	65	101	140	140		1	9606
AEAALLLLPEAAAER	Acetyl (Protein N-term)	1578.8617	0.86172219	628	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	1	0	0	2	0		1				24.671	24.671	2	0.00072222	23136	DP1145_7	109.24	58.952			4345900	66	628	66	102	141;142	141		2	9606
AEAEAQAEELSFPR	Unmodified	1546.7264	0.72635092	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		18.12	18.12	2;3	8.5534E-273	13468	DP1145_7	269.44	239.7			2544900000	67	158	67	103;104;105;106;107	143;144;145;146;147;148;149	144		6	9606
AEAESPGGASESDQDGGHESPPK	Unmodified	2237.9309	0.93087698	563	Q86V59	PNMAL1	PNMA-like protein 1	yes	yes	0	0	0	3	0			1			12.936	12.936	3	0.00039073	5334	DP1145_8	79.942	60.25			2598800	68	563	68	108	150	150		1	9606
AEDKEWMPVTK	Unmodified	1332.6384	0.63838754	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	4	0				2		16.029	16.029	3	0.00026252	8658	DP1145_9	130.1	68.679			0	69	173	69	109;110	151;152	151		2	9606
AEGYAEGDLTLYHR	Unmodified	1593.7423	0.74233534	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				17.299	17.299	3	0.0020876	12174	DP1145_7	99.732	83.934			252960000	70	575	70	111	153	153		1	9606
AELNEFLTR	Unmodified	1091.5611	0.56112349	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		18.623	18.623	2	9.5263E-25	12767	DP1145_9	168.27	76.366			261690000	71	205	71	112	154	154		1	9606
AELQMLLEEEIPSGK	Acetyl (Protein N-term);Oxidation (M)	1743.8601	0.86006721	576	Q8IZP0	ABI1	Abl interactor 1	yes	yes	1	1	0	3	0			1			24.299	24.299	2	0.025919	21850	DP1145_8	61.641	28.602			0	72	576	72	113	155	155	507	1	9606
AEPASVAAESLAGSR	Acetyl (Protein N-term)	1456.7158	0.71578623	707	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	1	0	0	4	0				1		19.723	19.723	2	0.0030528	14550	DP1145_9	84.821	50.614			116120000	73	707	73	114	156	156		0	9606
AEPVLMIDWPK	Oxidation (M)	1313.669	0.66895938	596	Q8TDX9	PKD1L1	Polycystic kidney disease protein 1-like 1	yes	yes	0	1	0	2	0		1				23.549	23.549	2	0.037136	21601	DP1145_7	79.906	43.35			1418400	74	596	74	115	157	157	516	0	9606
AEPYCSVLPGFTFIQHLPLSER	Unmodified	2560.2784	0.27843005	665	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	0		1				22.243	22.243	3	0.0049187	19682	DP1145_7	66.845	56.162			8449600	75	665	75	116	158	158		1	9606
AERGELDLTGAK	Acetyl (Protein N-term)	1300.6623	0.6622941	170	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	1	0	1	4	0				1		17.122	17.122	2	0.023513	10573	DP1145_9	69.721	31.445			153820000	76	170	76	117	159	159		1	9606
AESDFVKFDTPFLPK	Unmodified	1739.877	0.8770379	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.75	0.829		2	1	1		20.266	20.266	2;3	1.4042000000000002E-56	16780	DP1145_7	179.59	128.64			868270000	77	474	77	118;119;120;121	160;161;162;163	160		2	9606
AESDWDTVTVLR	Acetyl (Protein N-term)	1432.6834	0.68342347	68	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	1	0	0	5	0					1	21.908	21.908	2	0.0016873	17281	DP1145_10	101.38	51.963			0	78	68	78	122	164	164		1	9606
AETLEFNDVYQEVK	Acetyl (Protein N-term)	1725.8097	0.8097462	428	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	3.5	1.5		1			1	21.936	21.936	2	0.0010329	17428	DP1145_10	123.62	93.283			20969000	79	428	79	123;124	165;166;167	165		3	9606
AEVDMDTDAPQVSHKPGGEPK	Oxidation (M)	2223.0114	0.011375907	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	1	0	1					13.935	13.935	4	0.031452	4921	DP1145_6	46.514	17.092			1329400	80	466	80	125	168	168	435	1	9606
AEVNTIPGFDGVVK	Unmodified	1444.7562	0.75619449	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.038	19.038	2	0.00080067	14248	DP1145_8	115	35.019			85874000	81	115	81	126	169	169		1	9606
AEVQVLVLDGR	Acetyl (Protein N-term)	1239.6823	0.68230126	260	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	1	0	1					22.099	22.099	2	0.013306	17067	DP1145_6	87.568	43.219			0	82	260	82	127	170	170		1	9606
AEYLASIFGTEK	Acetyl (Protein N-term)	1369.6765	0.67654718	413	Q8WU68;Q01081	U2AF1L4;U2AF1	Splicing factor U2AF 26 kDa subunit;Splicing factor U2AF 35 kDa subunit	yes	no	1	0	0	4	0				1		24.981	24.981	2	0.00043001	21887	DP1145_9	111.27	60.793			4840900	83	413	83	128	171;172	171		2	9606
AEYLASIFGTEKDK	Acetyl (Protein N-term)	1612.7985	0.79845323	413	Q8WU68;Q01081	U2AF1L4;U2AF1	Splicing factor U2AF 26 kDa subunit;Splicing factor U2AF 35 kDa subunit	yes	no	1	0	1	4	0				1		23.03	23.03	2	6.186399999999999E-46	19149	DP1145_9	177.83	122.75			10128000	84	413	84	129	173;174;175	173		3	9606
AFAVQSAVR	Unmodified	947.51886	0.51886475	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					15.992	15.992	2	0.0039136	7730	DP1145_6	112.41	49.694			0	85	476	85	130	176	176		1	9606
AFICGSQLSQHQK	Unmodified	1502.73	0.72999651	594	Q8TAQ5	ZNF420	Zinc finger protein 420	yes	yes	0	0	0	3	0			1			15.332	15.332	3	0.0076334	8211	DP1145_8	75.739	18.564			10850000	86	594	86	131	177	177		1	9606
AFITNIPFDVK	Unmodified	1263.6863	0.68632401	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	2.5	0.5		1	1			20.425	20.425	2	1.2769E-152	16324	DP1145_8	235.66	195.6			82926000	87	307	87	132;133	178;179;180	179		3	9606
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	Unmodified	2751.4596	0.45956554	119	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				2		21.41	21.41	2;3	7.5967E-124	16801	DP1145_9	202.38	184.43			784650000	88	119	88	134;135	181;182;183;184	181		4	9606
AFLIEEQK	Unmodified	976.52295	0.52294707	289	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	3	2	1				1	17.161	17.161	2	3.4209E-10	10413	DP1145_10	148.33	100.41			296590000	89	289	89	136;137	185;186	185		1	9606
AFQNTATACAPVSHYR	Unmodified	1792.8315	0.83150147	693	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	3	0			1			15.424	15.424	3	0.0031565	8592	DP1145_8	88.561	61.85			22583000	90	693	90	138	187	187		1	9606
AFVAIGDYNGHVGLGVK	Unmodified	1715.8995	0.89950468	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				2		18.723	18.723	2;3	6.6211E-07	12962	DP1145_9	130.01	94.269			26590000	91	173	91	139;140	188;189	188		2	9606
AFVDFLSDEIKEER	Unmodified	1696.8308	0.83081599	425	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	1	4	0				1		20.618	20.618	3	1.0737E-07	15691	DP1145_9	166.62	127.95			72915000	92	425	92	141	190;191	191		2	9606
AFVHWYVGEGMEEGEFSEAR	Oxidation (M)	2345.0059	0.005896599	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;P68366	TUBA1B;TUBA1A;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	1	0	3	0			2			19.225	19.225	2;3	9.0428E-05	14552	DP1145_8	116.87	106.37			346500000	93	393;550;394	93	142;143	192;193;194;195	192	334	4	9606
AFVHWYVGEGMEEGEFSEAR	Unmodified	2329.011	0.010981977	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;P68366	TUBA1B;TUBA1A;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	0	0	3	0			1			20.024	20.024	3	2.2203E-39	15693	DP1145_8	167.92	154.19			70776000	94	393;550;394	93	144	196	196		0	9606
AFVRPSGTEDVVR	Unmodified	1431.747	0.74702678	94	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	1	3	0			1			15.505	15.505	3	1.8075E-05	8704	DP1145_8	132.56	87.951			0	95	94	94	145	197	197		1	9606
AFYGDTLVTGFAR	Unmodified	1416.7038	0.70376498	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		20.235	20.235	2	6.7679E-08	15264	DP1145_9	154.84	102.26			2956899999.9999995	96	700	95	146;147;148	198;199;200;201	201		4	9606
AFYPEEISSMVLTK	Unmodified	1613.8011	0.80109577	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0.816		1	1	1		21.129	21.129	2	8.6291E-32	17189	DP1145_8	174.57	126.61			10028000	97	148	96	149;150;151	202;203;204	203		3	9606
AFYPEEISSMVLTK	Oxidation (M)	1629.796	0.79601039	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			2			19.775	19.775	2;3	0.00018365	15437	DP1145_8	119.03	96.554			557610000	98	148	96	152;153	205;206;207	205	139	3	9606
AGAGGGNDIQWCFSQVK	Acetyl (Protein N-term)	1835.8261	0.82608174	387	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	1	0	0	3	0			1			21.056	21.056	2	0.034783	17273	DP1145_8	48.115	20.684			8768800	99	387	97	154	208	208		1	9606
AGAGSATLSMAYAGAR	Oxidation (M)	1469.6933	0.69327665	263	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	1	0	5	0					1	16.152	16.152	2	0.0081406	8735	DP1145_10	80.245	49.853			21040000	100	263	98	155	209	209	238	1	9606
AGAIAPCEVTVPAQNTGLGPEK	Unmodified	2179.0943	0.094317676	119	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		18.023	18.023	2	0.0025401	11993	DP1145_9	87.566	75.857			768360000	101	119	99	156	210	210		1	9606
AGATSEGVLANFFNSLLSK	Unmodified	1924.9894	0.9894419	788	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	3	0			1			24.274	24.274	2	1.0792E-18	21849	DP1145_8	150.26	116.5			2888700	102	788	100	157	211;212	211		2	9606
AGELTEDEVER	Unmodified	1246.5677	0.56772501	361	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	15.522	15.522	2	6.5147E-08	7728	DP1145_10	137.95	100.4			139340000	103	361	101	158	213	213		1	9606
AGEQLAPFLPQLVPR	Unmodified	1634.9144	0.91442646	532	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	2	0		1				21.732	21.732	2	0.033347	18940	DP1145_7	70.728	11.661			8851100	104	532	102	159	214	214		1	9606
AGIDPNAITYGYYNK	Unmodified	1658.794	0.79403656	557	Q7Z401	DENND4A	C-myc promoter-binding protein	yes	yes	0	0	0	4	0				1		20.618	20.618	2	0.0078765	15848	DP1145_9	91.701	47.276			15723000	105	557	103	160	215	215		1	9606
AGLELLSDQGYR	Acetyl (Protein N-term)	1362.6779	0.67794416	703	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	1	0	0	4	0				1		22.198	22.198	2	8.1308E-06	18064	DP1145_9	123.86	96.118			10911000	106	703	104	161	216	216		1	9606
AGLQFPVGR	Unmodified	943.52395	0.52395013	146;145	Q71UI9;P0C0S5;Q8IUE6;Q96QV6;P16104;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	H2AFV;H2AFZ;HIST2H2AB;HIST1H2AA;H2AFX;HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A.V;Histone H2A.Z;Histone H2A type 2-B;Histone H2A type 1-A;Histone H2AX;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	no	no	0	0	0	5	0					1	17.948	17.948	2	2.4173E-10	11498	DP1145_10	147.69	58.324			1758899999.9999998	107	145;146	105	162	217;218;219	218		3	9606
AGLSPANCQSDRVNLEK	Unmodified	1857.9003	0.90030932	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	1	1	0	1					15.428	15.428	3	0.03936	6918	DP1145_6	75.998	26.782			16853000	108	476	106	163	220	220		0	9606
AGNFYVPAEPK	Unmodified	1191.5924	0.59242362	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		17.122	17.122	2	0.015829	10464	DP1145_9	83.883	46.155			291700000	109	191	107	164	221	221		1	9606
AGPGSLELCGLPSQK	Unmodified	1512.7606	0.76062794	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.41	1	1	1	1	1	18.256	18.256	2	5.1795E-244	11984	DP1145_10	265	197.79			14319000000	110	474	108	165;166;167;168;169	222;223;224;225;226;227;228;229;230;231;232;233;234	222		13	9606
AGPNASIISLK	Unmodified	1069.6132	0.61315906	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					17.353	17.353	2	0.042103	9862	DP1145_6	80.231	51.313			33939000	111	681	109	170	235	235		0	9606
AGPQPLALQLEQLLNPR	Acetyl (Protein N-term)	1899.0578	0.057796236	724	Q9NY61	AATF	Protein AATF	yes	yes	1	0	0	2.5	0.5		1	1			25.655	25.655	2	7.888900000000001E-108	24427	DP1145_7	206.74	175.51			13075000	112	724	110	171;172	236;237;238;239;240;241;242	237		7	9606
AGPQPLALQLEQLLNPRPSEADPEADPEEATAAR	Acetyl (Protein N-term)	3635.8067	0.80673309	724	Q9NY61	AATF	Protein AATF	yes	yes	1	0	1	2.5	0.5		1	1			24.103	24.103	3	6.3772E-13	21555	DP1145_8	81.406	67.693			40728000	113	724	111	173;174	243;244;245	245		3	9606
AGTATSPAGSSPAVAGGTQR	Unmodified	1742.8547	0.85473933	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				14.331	14.331	2	3.201E-78	7694	DP1145_7	192.4	161.11			77526000	114	451	112	175	246;247	246		2	9606
AGTVVLDDVELR	Acetyl (Protein N-term)	1327.6983	0.69834526	212	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	1	0	0	2	0		1				21.914	21.914	2	0.00236	19128	DP1145_7	106.29	66.354			0	115	212	113	176	248	248		1	9606
AGTYFSNQAVR	Unmodified	1212.5887	0.58873523	475	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					16.085	16.085	2	0.00086248	7842	DP1145_6	122.13	87.949			34915000	116	475	114	177	249;250	250		2	9606
AGVNTVTTLVENK	Unmodified	1344.7249	0.72489436	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		17.522	17.522	2	9.6012E-06	11117	DP1145_9	125.74	81.312			827130000	117	366	115	178	251	251		1	9606
AGVNTVTTLVENKK	Unmodified	1472.8199	0.81985737	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4.33	0.471				2	1	16.268	16.268	2;3	4.991E-89	8974	DP1145_9	240.65	174.69			458270000	118	366	116	179;180;181	252;253;254;255	253		4	9606
AGVSFSGHR	Acetyl (Protein N-term)	958.46208	0.46207815	505	Q16643	DBN1	Drebrin	yes	yes	1	0	0	5	0					1	17.08	17.08	1	0.0018187	10309	DP1145_10	104.21	37.177			27136000	119	505	117	182	256	256		1	9606
AHQVVEDGYEFFAK	Unmodified	1638.7678	0.7678218	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3	1.22	1		1	2		18.331	18.331	2;3	4.4769E-88	12437	DP1145_9	199.4	180.44			5742100000	120	251;352	118	183;184;185;186	257;258;259;260;261	259		5	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	2 Oxidation (M)	3215.4724	0.4724082	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	1	2.25	0.968	2	3	2	1		15.473	15.473	3;4;5	5.3168E-13	7830	DP1145_9	114.03	90.12			1040799999.9999999	121	474	119	187;188;189;190;191;192;193;194	262;263;264;265;266;267;268;269;270;271;272;273;274	273	441;442	13	9606
AHREMLESAVLPPEDMSQSGPSGSHPQGPR	Oxidation (M)	3199.4775	0.47749358	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	3	1		1		1		16.147	16.147	4	7.3329E-09	10374	DP1145_7	95.287	68.438			168290000	122	474	119	195;196	275;276;277;278	275	441;442	4	9606
AHSIQIMKVEEIAASK	Oxidation (M)	1769.9346	0.93456956	418	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	1	1	5	0					1	16.33	16.33	3	0.0089052	9089	DP1145_10	85.576	57.027			26879000	123	418	120	197	279	279	373	1	9606
AHSSMVGVNLPQK	Oxidation (M)	1382.6976	0.69763375	106	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	1	0	5	0					1	14.508	14.508	3	0.0125	6101	DP1145_10	71.176	49.626			11018000	124	106	121	198	280	280	78	1	9606
AHWTPFEGQK	Unmodified	1199.5724	0.57235688	221	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					16.176	16.176	2	0.0052789	7996	DP1145_6	95.909	60.471			11175000	125	221	122	199	281	281		1	9606
AIAYLFPSGLFEK	Unmodified	1454.781	0.78095267	406	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	4	0				1		22.231	22.231	2	0.0036766	18060	DP1145_9	99.568	62.092			10055000	126	406	123	200	282	282		1	9606
AIENIDTLTNLESLFLGK	Unmodified	1990.0623	0.062272491	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	3.67	0.471			1	2		24.269	24.269	2;3	1.0522E-111	20906	DP1145_9	257.2	164.59			36493000	127	497	124	201;202;203	283;284;285;286;287;288	285		6	9606
AIEPPPLDAVIEAEHTLR	Unmodified	1970.0473	0.047291129	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				20.683	20.683	3	0.0068971	15224	DP1145_6	80.638	41.382			93794000	128	427	125	204;205	289;290;291	290		3	9606
AIGIGAYLVR	Unmodified	1031.6128	0.61276513	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					19.455	19.455	2	3.2192E-33	13211	DP1145_6	158.36	113.64			1232100000	129	41;438	126	206	292	292		0	9606
AIGPHDVLATLLNNLK	Unmodified	1687.9621	0.96210494	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				22.726	22.726	2;3	8.7144E-90	20393	DP1145_7	202.05	160.94			17665000	130	80	127	207;208	293;294;295	295		3	9606
AIGTEPDSDVLSEIMHSFAK	Unmodified	2146.0252	0.025235058	31	O00410	IPO5	Importin-5	yes	yes	0	0	0	2	0		1				22.622	22.622	3	0.0077114	20305	DP1145_7	73.984	49.869			8179200	131	31	128	209	296	296		1	9606
AIIIFVPVPQLK	Unmodified	1336.8482	0.84824438	351	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	3	2	1				1	21.972	21.972	2	0.0074563	17243	DP1145_10	92.439	92.439			137940000	132	351	129	210;211	297;298;299	297		3	9606
AILIFNNHGKPR	Unmodified	1378.7834	0.78335271	607	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	1	5	0					1	15.377	15.377	3	0.0070047	7507	DP1145_10	103.26	85.888			11331000	133	607	130	212	300	300		0	9606
AILVDLEPGTMDSVR	Oxidation (M)	1630.8236	0.82362212	131;460;455	P07437;Q13885;Q9BVA1;Q13509	TUBB;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	1.12		1	1	1	1	19.145	19.145	2	0.00045719	13682	DP1145_9	117.95	81.631			1596099999.9999998	134	131;460;455	131	213;214;215;216	301;302;303;304	304	119	4	9606
AILVDLEPGTMDSVR	Unmodified	1614.8287	0.8287075	131;460;455	P07437;Q13885;Q9BVA1;Q13509	TUBB;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	4	0				1		20.059	20.059	2	0.0057465	15008	DP1145_9	105.13	52.045			28227000	135	131;460;455	131	217	305	305		1	9606
AIPQLQGYLR	Unmodified	1157.6557	0.65569258	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	2.5	1.5	1			1		18.989	18.989	2	0.0030438	13343	DP1145_9	120.49	68.233			399680000	136	419	132	218;219	306;307	307		2	9606
AIQLEYSEAR	Unmodified	1178.5932	0.5931519	55	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	3	0			1			16.88	16.88	2	4.2361E-11	10896	DP1145_8	145.17	69.96			0	137	55	133	220	308	308		1	9606
AITGASLADIMAK	Unmodified	1260.6748	0.67477304	407	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	19.533	19.533	2	0.02969	14088	DP1145_10	74.533	39.095			181220000	138	407	134	221	309	309		1	9606
AIVSSGTLGDR	Unmodified	1074.5669	0.56693715	421	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	2	0		1				15.64	15.64	2	2.8673000000000003E-64	9622	DP1145_7	195.17	118.12			150870000	139	421	135	222	310	310		1	9606
AKEQEAEPEEQEEDSSSDPR	Unmodified	2288.9517	0.951672	324	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	1	3	0			1			13.637	13.637	3	2.0656E-152	6032	DP1145_8	228.65	227.19			22099000	140	324	136	223	311;312	312		2	9606
AKSSTATHPPGPAVQLNK	Unmodified	1802.9639	0.96389585	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.75	0.829		2	1	1		13.825	13.825	3;4	1.3733E-07	7002	DP1145_7	176.08	154.26			59559000	141	474	137	224;225;226;227	313;314;315;316;317;318	313		6	9606
ALAAAGYDVEK	Unmodified	1106.5608	0.56078914	150;176;175	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	0	4	0				2		15.988	15.988	1;2	1.1233E-78	8689	DP1145_9	200.6	117.85			3819599999.9999995	142	176;150;175	138	228;229	319;320;321;322;323	323		5	9606
ALAAAGYDVEKNNSR	Unmodified	1577.7798	0.77978347	150;176;175	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				2		14.895	14.895	2;3	3.5170999999999996E-124	6953	DP1145_9	222.81	158.28			206740000	143	176;150;175	139	230;231	324;325;326	324		3	9606
ALAVSDLNR	Unmodified	957.52434	0.52434406	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		16.222	16.222	1;2	4.1693E-82	10568	DP1145_7	194.44	91.931			3026199999.9999995	144	158	140	232;233;234;235;236	327;328;329;330;331;332;333;334	331		7	9606
ALAVVYGPHEIR	Unmodified	1323.7299	0.72992016	703	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	5	0					1	16.587	16.587	3	0.00090182	9282	DP1145_10	115.33	86.619			27651000	145	703	141	237	335	335		1	9606
ALDMSYDHKPEDEVELAR	Unmodified	2116.9735	0.97353384	48	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	1	3	0			1			17.123	17.123	3	0.036471	11311	DP1145_8	102.39	82.021			69233000	146	48	142	238	336	336		0	9606
ALEDAFLAIDAK	Unmodified	1275.6711	0.67106787	48	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			1			20.525	20.525	2	0.0064383	16465	DP1145_8	94.297	64.523			41138000	147	48	143	239	337	337		1	9606
ALEDLAGFK	Unmodified	962.5073	0.50729701	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0			1			18.623	18.623	2	0.032393	13755	DP1145_8	81.191	38.067			58050000	148	276	144	240	338	338		1	9606
ALEESNYELEGK	Unmodified	1380.6409	0.64088996	15	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2	0		1				16.519	16.519	2	0.0077767	11079	DP1145_7	91.855	44.252		+	305660000	149	15	145	241	339	339		1	9606
ALELFVK	Unmodified	818.49019	0.49019038	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	1	0	1					18.755	18.755	2	0.032063	12035	DP1145_6	97.596	30.603			5120700	150	735	146	242	340	340		1	9606
ALELTGLK	Unmodified	843.50657	0.50656873	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				17.599	17.599	2	1.1983E-10	12704	DP1145_7	152.63	43.651			296040000	151	194	147	243	341;342;343	342		3	9606
ALEQIDENLIYWPR	Unmodified	1758.8941	0.89408495	673	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		21.684	21.684	3	0.042501	17190	DP1145_9	65.295	42.904			0	152	673	148	244	344	344		1	9606
ALETLTGALFQRPPLIAAVK	Unmodified	2108.2358	0.2357606	67	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	1	3	0			1			21.125	21.125	3	0.00021199	17337	DP1145_8	119	96.971			11572000	153	67	149	245	345	345		1	9606
ALFPGDSEIDQLFR	Unmodified	1606.7991	0.79912193	211	P24941;Q00526	CDK2;CDK3	Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	yes	no	0	0	0	4	0				1		22.524	22.524	2	6.6678E-88	18441	DP1145_9	202.96	161.88			12601000	154	211	150	246	346	346		1	9606
ALGQNPTNAEVLK	Unmodified	1353.7252	0.72522871	172	P60660;P14649	MYL6;MYL6B	Myosin light polypeptide 6;Myosin light chain 6B	yes	no	0	0	0	5	0					1	16.176	16.176	2	0.011312	8758	DP1145_10	93.442	63.775			45333000	155	172	151	247	347	347		0	9606
ALGTLVSHVTLR	Unmodified	1265.7456	0.74557022	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					17.554	17.554	2	2.8855E-14	10250	DP1145_6	142	81.877			11912000	156	608	152	248	348	348		0	9606
ALGTPNNEVWPEVESLQDYK	Unmodified	2288.0961	0.096091815	122	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		21.016	21.016	2	1.1609999999999999E-38	16284	DP1145_9	191.01	142.5			29808000	157	122	153	249	349;350;351	351		3	9606
ALIAAQLDNAIEK	Unmodified	1368.7613	0.76127986	673	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	4	0				1		18.823	18.823	2	1.4101E-49	13110	DP1145_9	176.95	110.33			78819000	158	673	154	250	352	352		0	9606
ALIAAQLDNAIEKELLER	Unmodified	2009.1157	0.11570504	673	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	1	4	0				1		21.674	21.674	3	0.00012231	17330	DP1145_9	126.77	93.41			34743000	159	673	155	251	353;354	354		2	9606
ALIAAQYSGAQVR	Unmodified	1346.7306	0.73064844	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			16.961	16.961	2	0.0037986	11142	DP1145_8	98.943	42.685			65440000	160	218	156	252	355	355		1	9606
ALLANALTSALR	Unmodified	1212.719	0.71902112	333	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	1	0	1					20.155	20.155	2	0.0071431	14361	DP1145_6	109.42	55.262			23181000	161	333	157	253	356	356		1	9606
ALLFIPR	Unmodified	828.52216	0.52215921	136	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	4	0				1		19.359	19.359	2	0.00028658	13799	DP1145_9	120.76	25.805			6993800	162	136	158	254	357	357		1	9606
ALLLAQWAWQEGSVTR	Unmodified	1827.9632	0.96316757	432	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					22.19	22.19	2	5.282700000000001E-25	17213	DP1145_6	196.67	161.17			4792100	163	432	159	255	358;359	358		2	9606
ALLQAILQTEDMLK	Oxidation (M)	1601.8698	0.86984403	174	P15924	DSP	Desmoplakin	yes	yes	0	1	0	1	0	1					22.021	22.021	2	0.0081374	16887	DP1145_6	83.045	36.315			3564600	164	174	160	256	360	360	179	1	9606
ALLTTNQLPQPDVFPLFK	Unmodified	2041.1248	0.12481317	724	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	3	0.816		1	1	1		22.602	22.602	2	2.0883000000000003E-255	19412	DP1145_8	265.75	224.37			133410000	165	724	161	257;258;259	361;362;363;364;365	364		4	9606
ALMLQGVDLLADAVAVTMGPK	2 Oxidation (M)	2144.1221	0.12211233	152	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	2	0	3	0			1			23.231	23.231	3	0.011123	20377	DP1145_8	66.308	40.699			7536500	166	152	162	260	366	366	146;147	1	9606
ALMLQGVDLLADAVAVTMGPK	Oxidation (M)	2128.1272	0.12719771	152	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	1	0	3	0			2			23.99	23.99	2;3	0.001362	21456	DP1145_8	80.303	68.11			11900000	167	152	162	261;262	367;368;369	368	146;147	3	9606
ALNMAIPGGPK	Oxidation (M)	1083.5747	0.57466507	542	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	1	0	1					15.732	15.732	2	0.0026234	7261	DP1145_6	98.629	43.518			6140200	168	542	163	263	370	370	481	1	9606
ALPETCNTLTK	Unmodified	1246.6227	0.62273747	793				yes	yes	0	0	0	5	0					1	16.176	16.176	2	0.012283	8608	DP1145_10	87.696	5.244	+		10521000000	169	793	164	264	371;372;373	371		3	9606
ALQEEIDRESGK	Unmodified	1373.6787	0.67867245	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	1	3	0			1			14.881	14.881	3	3.6722E-21	7739	DP1145_8	152.7	112.32			71012000	170	508	165	265	374	374		0	9606
ALQEEIDRESGKTEASETR	Unmodified	2148.0295	0.029468813	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	2	3	0			1			14.978	14.978	3	2.1933E-19	7926	DP1145_8	149.19	123.88			23248000	171	508	166	266	375	375		0	9606
ALQEFDLALR	Unmodified	1174.6346	0.63462279	625	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	1.5	0.5	1	1				19.755	19.755	2	5.3988E-05	13599	DP1145_6	135.83	70.578			4870200	172	625	167	267;268	376;377	376		2	9606
ALQEGQPEEDETDDRR	Unmodified	1886.8242	0.82422706	620	Q96BZ8	LENG1	Leukocyte receptor cluster member 1	yes	yes	0	0	1	4	0				1		14.077	14.077	3	0.0034039	5771	DP1145_9	114.7	103.16			3991100	173	620	168	269	378	378		1	9606
ALQLLQMYYEGR	Unmodified	1483.7493	0.74933497	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					20.986	20.986	2	0.038219	15504	DP1145_6	70.399	35.596			3643100	174	681	169	270	379	379		1	9606
ALQSVGQIVGEVLK	Unmodified	1439.8348	0.83477916	365	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	4	0				1		21.41	21.41	2	0.033232	16927	DP1145_9	72.531	37.353			29879000	175	365	170	271	380	380		1	9606
ALSKSMHAR	Acetyl (Protein N-term);Oxidation (M)	1057.5339	0.53386288	567	Q86W50	METTL16	Methyltransferase-like protein 16	yes	yes	1	1	1	3.5	0.5			1	1		20.188	20.188	2	0.025765	15061	DP1145_8	67.169	14.87			0	176	567	171	272;273	381;382	381	495	2	9606
ALTLIAGSPLK	Unmodified	1082.6699	0.66994566	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1.5	0.5	1	1				18.776	18.776	2	1.1298E-39	12133	DP1145_6	164.46	164.46			118000000	177	566	172	274;275	383;384	383		1	9606
ALTLQDLDNIWAAQAGK	Unmodified	1826.9527	0.95266246	615	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	1.5	0.5	1	1				22.594	22.594	2	0.00014301	20150	DP1145_7	158.34	120.74			2447200	178	615	173	276;277	385;386	386		1	9606
ALTSFLPAPTQLSQDQLEAEEK	Acetyl (Protein N-term)	2457.2275	0.22749992	457	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	0	3.33	0.471			2	1		23.704	23.704	2;3	1.231E-117	20942	DP1145_8	212.03	195.85			55322000	179	457	174	278;279;280	387;388;389;390;391;392;393;394;395	391		9	9606
ALTVPELTQQMFDAK	Unmodified	1690.86	0.86000763	395;455	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	3	0.816		1	1	1		21.298	21.298	2	6.296800000000001E-25	16671	DP1145_9	158.42	100.25			486180000	180	395;455	175	281;282;283	396;397;398;399;400	400		5	9606
ALTVPELTQQMFDAK	Oxidation (M)	1706.8549	0.85492225	395;455	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	4	0				1		19.316	19.316	2	0.0060364	13864	DP1145_9	84.352	19.407			150750000	181	395;455	175	284	401;402	401	339	2	9606
ALTVPELTQQMFDAR	Unmodified	1718.8662	0.86615564	664	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	3	0			1			21.499	21.499	2	0.017944	17818	DP1145_8	105.17	67.745			0	182	664	176	285	403	403		1	9606
ALTVPELTQQMFDSK	Oxidation (M)	1722.8498	0.84983687	460	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	1	0	2	1	1		1			19.24	19.24	2	0.0049098	14628	DP1145_8	89.189	68.874			176300000	183	460	177	286;287	404;405	405	431	2	9606
ALTVPELTQQVFDAK	Unmodified	1658.8879	0.88793694	131	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	2.83	1.07	1	1	2	2		21.072	21.072	2;3	3.1598E-25	17123	DP1145_8	157.33	141.7			1381100000	184	131	178	288;289;290;291;292;293	406;407;408;409;410;411;412;413;414;415;416;417	412		11	9606
ALVAYYQK	Unmodified	954.51747	0.51746776	357	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	16.242	16.242	2	0.003016	8805	DP1145_10	122.15	34.573			174010000	185	357	179	294	418;419	418		2	9606
ALVDGPCTQVR	Unmodified	1214.6078	0.60775611	300	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	15.997	15.997	2	1.8138000000000002E-78	8477	DP1145_10	199.46	145.68			177740000	186	300	180	295	420;421;422	422		3	9606
ALVDILSEVSK	Unmodified	1172.6653	0.66525421	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.062	21.062	2	0.0046232	17995	DP1145_7	98.048	76.676			28873000	187	655	181	296	423	423		1	9606
ALVLDCHYPEDEVGQEDEAESDIFSIR	Unmodified	3135.3979	0.39788908	425	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		20.916	20.916	3	1.2618E-14	16250	DP1145_9	121.35	109.93			51863000	188	425	182	297	424;425;426	424		3	9606
ALYDTFSAFGNILSCK	Unmodified	1805.8658	0.86582129	160	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	0	0	3	0			1			22.743	22.743	2	0.013555	19593	DP1145_8	109.22	83.307			0	189	160	183	298	427	427		1	9606
AMASLETIGPLMNGMKK	2 Oxidation (M)	1822.8991	0.89911203	73	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	2	1	3	0			1			16.137	16.137	2	0.021658	9927	DP1145_8	57.019	14.217			16235000	190	73	184	299	428;429	429	60;61	2	9606
AMFLQPDLDSLVDFSTNNQK	Oxidation (M)	2298.0838	0.083812569	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	1.5	0.5	1	1				22.124	22.124	2	0.00066684	17186	DP1145_6	110.25	89.512			14584000	191	655	185	300;301	430;431	430	560	2	9606
AMGEQAVALAR	Oxidation (M)	1131.5706	0.57064232	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		15.108	15.108	2	1.1048E-05	8196	DP1145_8	134.48	90.362			865530000	192	115	186	302;303;304	432;433;434;435;436;437	433	85	6	9606
AMGEQAVALAR	Unmodified	1115.5757	0.5757277	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			16.37	16.37	2	0.003555	10092	DP1145_8	100.02	64.137			269380000	193	115	186	305;306	438;439;440	439		3	9606
AMGIMNSFVNDIFER	2 Oxidation (M)	1774.8018	0.80184082	128;66	Q8N257;Q16778;P33778;P23527;P06899;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	2	0	5	0					1	20.852	20.852	2	5.9718E-18	15961	DP1145_10	153.95	130.57			322240000	194	128;66	187	307	441	441	52;53	1	9606
AMGIMNSFVNDIFER	Oxidation (M)	1758.8069	0.8069262	128;66	Q8N257;Q16778;P33778;P23527;P06899;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	1	0	5	0					2	22.06	22.06	2	6.4995E-60	16944	DP1145_10	188.27	156.51			390540000	195	128;66	187	308;309	442;443;444;445;446	444	52;53	5	9606
AMGIMNSFVNDIFER	Unmodified	1742.812	0.81201158	128;66	Q8N257;Q16778;P33778;P23527;P06899;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	0	5	0					1	23.141	23.141	2	6.4516E-46	19032	DP1145_10	175.74	141.66			39686000	196	128;66	187	310	447;448	447		2	9606
AMLSGPGQFAENETNEVNFR	Oxidation (M)	2226.0011	0.0011455721	492	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	1	0	5	0					1	18.999	18.999	2	8.2627E-64	13227	DP1145_10	181.58	151.15			19064000	197	492	188	311	449	449	458	1	9606
AMLSGPGQFAENETNEVNFR	Unmodified	2210.0062	0.00623095	492	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	5	0					1	19.501	19.501	2	1.6193999999999999E-81	13886	DP1145_10	205.62	142.89			0	198	492	188	312	450	450		1	9606
AMLTPKPAGGDEKDIK	Oxidation (M)	1685.8658	0.86582129	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	2	2.5	0.5		1	1			13.652	13.652	3	0.0077914	6211	DP1145_7	91.812	59.11			3631000	199	276	189	313;314	451;452	451	246	2	9606
AMLTPKPAGGDEKDIK	Unmodified	1669.8709	0.87090667	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				14.331	14.331	3	0.010352	7611	DP1145_7	93.243	55.103			13658000	200	276	189	315	453	453		0	9606
AMPEEEPVRGPAK	Unmodified	1409.6973	0.6972994	625	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	1	2	0		1				14.195	14.195	3	0.0031452	7578	DP1145_7	107.03	33.075			4621900	201	625	190	316	454	454		1	9606
AMTDTFTLQAHDQFSPFSSSSGR	Oxidation (M)	2533.118	0.11796624	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		19.124	19.124	3	0.0015179	14539	DP1145_8	70.99	61.235			1005999999.9999999	202	639	191	317;318	455;456	455	537	2	9606
ANGVTDLLVVHEHR	Unmodified	1558.8216	0.82158871	623	Q96G21	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4	yes	yes	0	0	0	4	0				1		16.787	16.787	3	0.019526	9802	DP1145_9	71.879	38.574			8852500	203	623	192	319	457	457		0	9606
ANHFFTVTDPR	Unmodified	1303.6309	0.63093439	696	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		16.732	16.732	3	0.038605	9827	DP1145_9	59.84	35.33			26972000	204	696	193	320	458	458		1	9606
ANIVHLMLSSPEQIQK	Oxidation (M)	1822.9611	0.96111866	322	P55060	CSE1L	Exportin-2	yes	yes	0	1	0	2	0		1				17.499	17.499	3	6.8261E-05	12596	DP1145_7	123.63	101.28			52606000	205	322	194	321	459;460	460	290	2	9606
ANPALYVLR	Unmodified	1015.5815	0.581465	542	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					18.255	18.255	2	0.0033992	11347	DP1145_6	90.777	36.165			7373900	206	542	195	322	461	461		0	9606
APAMFNIR	Oxidation (M)	934.46947	0.46947171	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4.5	0.5				1	1	16.213	16.213	2	0.0019306	8934	DP1145_9	119.22	74.69			398400000	207	341	196	323;324	462;463;464	463	306	3	9606
APAMFNIR	Unmodified	918.47456	0.47455709	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		17.822	17.822	2	2.176E-06	11505	DP1145_9	143.18	143.18			96018000	208	341	196	325	465;466;467	466		3	9606
APAMQPAEIQFAQR	Oxidation (M)	1572.7719	0.77186132	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.5	1.5		1			1	16.884	16.884	2	1.4782E-25	11758	DP1145_7	161.67	144.76			1230700000	209	474	197	326;327	468;469;470;471	470	443	4	9606
APAMQPAEIQFAQR	Unmodified	1556.7769	0.7769467	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0		2				17.999	17.999	2;3	0.010769	13440	DP1145_7	97.463	43.458			31391000	210	474	197	328;329	472;473	473		1	9606
APEDFSQNWK	Unmodified	1220.5462	0.54620171	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			17.423	17.423	2	1.5625E-35	11745	DP1145_8	175.91	117.68			274510000	211	679	198	330	474	474		1	9606
APEMTNELKNDLK	Oxidation (M)	1517.7396	0.73955814	525	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	1	1	2	0		1				14.877	14.877	3	0.020976	8483	DP1145_7	79.744	30.296			21191000	212	525	199	331	475	475	470	0	9606
APGPWDPLASAAGLK	Unmodified	1449.7616	0.76161421	74	O75190	DNAJB6	DnaJ homolog subfamily B member 6	yes	yes	0	0	0	4	0				1		20.717	20.717	2	0.0029747	15874	DP1145_9	108.98	70.708			17923000	213	74	200	332	476	476		0	9606
APILIATDVASR	Unmodified	1225.703	0.7030367	186;612	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			18.123	18.123	2	4.4914E-24	12897	DP1145_8	162.64	128.38			605120000	214	612;186	201	333	477;478	477		2	9606
APIRPDIVNFVHTNLR	Unmodified	1861.0323	0.032250187	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			18.623	18.623	3	0.012953	13785	DP1145_8	100.41	75.045			585560000	215	250	202	334	479	479		1	9606
APKPDGPGGGPGGSHMGGNYGDDR	Oxidation (M)	2267.9614	0.96140602	246	P35637	FUS	RNA-binding protein FUS	yes	yes	0	1	1	3	0			1			12.835	12.835	3	5.9153E-05	5049	DP1145_8	86.791	78.968			27134000	216	246	203	335	480	480	227	1	9606
APKPDGPGGGPGGSHMGGNYGDDR	Unmodified	2251.9665	0.9664914	246	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	3	0			1			14.131	14.131	4	3.1226E-05	6734	DP1145_8	98.135	83.697			63270000	217	246	203	336	481	481		1	9606
APQVLVLAPTR	Unmodified	1163.7026	0.70264277	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				17.899	17.899	2	0.04092	13370	DP1145_7	70.552	47.029			33994000	218	709	204	337	482	482		1	9606
AQAAAPASVPAQAPK	Unmodified	1376.7412	0.74121312	285	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	5	0					1	14.68	14.68	2	3.1409E-17	6381	DP1145_10	151.13	106.1			34402000	219	285	205	338	483;484	483		2	9606
AQAAPEKEAAAVAPPER	Unmodified	1704.8795	0.87949752	640	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				14.734	14.734	3	0.044846	8157	DP1145_7	62.438	45.558			5930300	220	640	206	339	485	485		0	9606
AQALEDLAGFK	Unmodified	1161.603	0.60298831	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				18.896	18.896	2	0.013846	14866	DP1145_7	85.862	46.609			390630000	221	276	207	340	486	486		1	9606
AQALEDLAGFKELFQTR	Unmodified	1936.0054	0.005426314	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					21.453	21.453	3	0.0092999	16137	DP1145_6	86.455	68.752			8169500	222	276	208	341	487	487		1	9606
AQALEELTGFR	Unmodified	1233.6354	0.63535107	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					19.355	19.355	2	5.2544E-51	12918	DP1145_6	172.23	116.86			19638000	223	276	209	342	488	488		0	9606
AQAVHPGYGFLSENK	Unmodified	1616.7947	0.79470526	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.74	16.74	2	0.033819	10737	DP1145_8	70.54	2.025			235140000	224	115	210	343	489	489		1	9606
AQAVHPGYGFLSENKEFAR	Unmodified	2120.0439	0.043937085	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2.33	0.943	1		2			17.302	17.302	3;4	1.5842E-93	11521	DP1145_8	223.93	204.87			557890000	225	115	211	344;345;346	490;491;492;493;494	491		5	9606
AQAVSEEEEEEEGKSSSPK	Unmodified	2048.9022	0.90220261	680	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	1	1.5	0.5	1	1				13.93	13.93	3	2.4567E-07	7137	DP1145_7	161.35	143.99			11198000	226	680	212	347;348	495;496	496		2	9606
AQDQGEKENPMR	Acetyl (Protein N-term)	1443.6412	0.64124108	382	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	1	5	0					1	14.68	14.68	2	2.4737E-84	6279	DP1145_10	199.03	166.3			55419000	227	382	213	349	497;498	498		2	9606
AQDQGEKENPMR	Acetyl (Protein N-term);Oxidation (M)	1459.6362	0.6361557	382	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	1	5	0					1	13.527	13.527	2	0.023974	4834	DP1145_10	48.188	40.542			1180700	228	382	213	350	499	499	325	0	9606
AQEEADYIEWLK	Unmodified	1493.7038	0.70382456	584	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2	0		1				20.565	20.565	2	2.7895E-11	17169	DP1145_7	142.98	110.97			28358000	229	584	214	351	500	500		1	9606
AQEEYEQIQAK	Unmodified	1335.6307	0.63065962	731	Q9P031	CCDC59	Thyroid transcription factor 1-associated protein 26	yes	yes	0	0	0	4	0				1		15.218	15.218	2	0.0017861	7434	DP1145_9	131.52	105.71			24179000	230	731	215	352	501	501		1	9606
AQEPESGLSEETQVK	Unmodified	1630.7686	0.76860967	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1.5	0.5	1	1				15.686	15.686	2	5.0927E-11	7340	DP1145_6	140.14	106.06			29541000	231	401	216	353;354	502;503;504	502		3	9606
AQFEGIVTDLIR	Unmodified	1360.7351	0.73506511	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.125	21.125	2	0.0095163	17430	DP1145_8	88.681	56.81			259580000	232	254	217	355	505	505		1	9606
AQGPQQQPGSEGPSYAK	Unmodified	1728.8067	0.80672651	515	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	4	0				1		14.375	14.375	2	3.8164999999999997E-147	6177	DP1145_9	227.48	121.51			12686000	233	515	218	356	506	506		1	9606
AQHQQALSSLELLNVLFR	Unmodified	2066.1273	0.12727278	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				22.546	22.546	3	0.013468	20193	DP1145_7	71.929	45.934			11259000	234	655	219	357	507	507		1	9606
AQIHDLVLVGGSTR	Unmodified	1464.8049	0.80487601	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			2			17.123	17.123	2;3	1.0993E-11	11198	DP1145_8	143.76	117.71			3554399999.9999995	235	148	220	358;359	508;509;510	508		3	9606
AQPLEDLAGLK	Unmodified	1153.6343	0.63428844	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1.5	0.5	1	1				18.826	18.826	2	3.273E-08	14529	DP1145_7	120.87	69.533			335900000	236	276	221	360;361	511;512	512		0	9606
AQPLEDLAGLKELFQTPVCTDKPTTHEK	Unmodified	3165.6016	0.60161468	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		2				20.165	20.165	4;5	0.025513	16735	DP1145_7	49.485	37.166			76155000	237	276	222	362;363	513;514	514		1	9606
AQPLEDLASFQELSQTPGHTEELANGAADSFTSAPK	Unmodified	3756.7755	0.77549254	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				21.095	21.095	3	6.4952E-15	18165	DP1145_7	74.498	51.35			17962000	238	276	223	364	515;516	515		2	9606
AQPSASLGVGYR	Unmodified	1204.62	0.62003536	636	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	0			1			16.176	16.176	2	0.016852	9730	DP1145_8	79.489	43.108			56091000	239	636	224	365	517;518	517		2	9606
AQPSVSLGAPYR	Unmodified	1244.6513	0.65133548	636	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	3	0			1			16.833	16.833	2	0.0095163	10785	DP1145_8	88.681	49.428			28655000	240	636	225	366	519;520	519		2	9606
AQPTPSSSATQSKPTPVKPNYALK	Unmodified	2497.3177	0.31765233	348	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	2	4	0				1		14.798	14.798	4	0.00050995	6782	DP1145_9	78.418	66.5			13383000	241	348	226	367	521	521		1	9606
AQQNNVEHKVETFSGVYK	Unmodified	2077.0229	0.022867292	351	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					2	16.403	16.403	3;4	0.010481	9096	DP1145_10	74.428	52.527			120320000	242	351	227	368;369	522;523	522		2	9606
AQSLVISPPAPSPR	Unmodified	1418.7882	0.78816332	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					17.454	17.454	2	7.556E-05	10062	DP1145_6	123.67	92.874			30221000	243	276	228	370	524	524		1	9606
ARFEELNADLFR	Unmodified	1479.747	0.74702678	154	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			2			19.024	19.024	2;3	7.7326E-11	14398	DP1145_8	121.04	101.65			571020000	244	154	229	371;372	525;526	526		2	9606
ARHDSPDLAPNVTYSLPR	Unmodified	2008.0126	0.012636957	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	1	2	0		2				17.199	17.199	3;4	0.013406	12037	DP1145_7	94.384	61.39			66971000	245	656	230	373;374	527;528	527		1	9606
ARMVMQTMEPK	3 Oxidation (M)	1368.62	0.61997705	622	Q96ED9	HOOK2	Protein Hook homolog 2	yes	yes	0	3	1	2	0		1				19.215	19.215	2	0.045153	15195	DP1145_7	44.753	15.28			0	246	622	231	375	529	529	530;531;532	1	9606
ASALEQFVNSVR	Acetyl (Protein N-term)	1361.6939	0.69392858	762	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	1	0	0	4	0				1		24.154	24.154	2	1.2095E-56	20784	DP1145_9	187.99	97.165			5537800	247	762	232	376	530;531	531		2	9606
ASAQDAGDHVQPPEGR	Unmodified	1633.7445	0.7444606	619	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4.5	0.5				1	1	13.897	13.897	3	0.011169	4342	DP1145_9	71.545	46.616			180110000	248	619	233	377;378	532;533;534	533		2	9606
ASAVSELSPR	Unmodified	1015.5298	0.52982336	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				15.548	15.548	2	0.0034679	9406	DP1145_7	119.75	61.151			23195000	249	767	234	379	535	535		1	9606
ASAVSPANLPAVLLQPR	Acetyl (Protein N-term)	1744.9836	0.98356866	303	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	1.5	0.5	1	1				23.114	23.114	2	3.8246E-61	20915	DP1145_7	185.57	124.93			8596000	250	303	235	380;381	536;537;538;539;540	539		5	9606
ASEIMVDDEELAQHPATTEDIR	Oxidation (M)	2485.1279	0.12786223	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	2	0		1				17.483	17.483	3	0.0059137	12782	DP1145_7	67.312	43.245			95272000	251	575	236	382	541	541	504	1	9606
ASESSKPWPDATYGTGSASR	Unmodified	2053.9341	0.93411186	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	1.67	0.471	1	2				16.117	16.117	2;3	4.887E-130	10364	DP1145_7	230.23	212.04			98393000	252	767	237	383;384;385	542;543;544;545;546	545		5	9606
ASFVTEVLAHSGR	Acetyl (Protein N-term)	1414.7205	0.72047768	56	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	1	0	0	1.5	0.5	1	1				22.274	22.274	2	7.2808E-18	19730	DP1145_7	152.7	125.57			31015000	253	56	238	386;387	547;548;549;550;551	550		5	9606
ASGNYATVISHNPETK	Unmodified	1687.8166	0.81656291	383	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	3.5	1.5	1			2	1	15.317	15.317	2;3	0	7623	DP1145_9	338.47	296.78			1162200000	254	383	239	388;389;390;391	552;553;554;555;556;557	557		6	9606
ASGNYATVISHNPETKK	Unmodified	1815.9115	0.91152593	383	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4.33	0.471				2	1	14.46	14.46	3;4	0.00054302	6312	DP1145_9	135.61	97.701			326860000	255	383	240	392;393;394	558;559;560;561;562	562		5	9606
ASGPPVSELITK	Unmodified	1197.6605	0.66050319	150;176;175	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	no	no	0	0	0	4.5	0.5				1	1	17.434	17.434	2	1.1761E-05	10661	DP1145_9	127.51	64.932			3197599999.9999995	256	176;150;175	241	395;396	563;564;565	564		3	9606
ASGQAFELILSPR	Unmodified	1387.746	0.74596415	178	P16949	STMN1	Stathmin	yes	yes	0	0	0	5	0					1	20.19	20.19	2	1.9199E-05	14902	DP1145_10	122.33	73.025			4923900	257	178	242	397	566	566		1	9606
ASGVAVSDGVIK	Acetyl (Protein N-term)	1143.6136	0.61355299	207	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	5	0					1	18.539	18.539	2	0.00026871	12416	DP1145_10	115.18	36.911			23051000	258	207	243	398	567;568	567		2	9606
ASINMLR	Unmodified	803.43236	0.43235793	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		16.197	16.197	2	0.020821	8990	DP1145_9	104.11	6.5147			25451000	259	191	244	399	569	569		1	9606
ASITPGTILIILTGR	Unmodified	1524.9239	0.92392852	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	3.17	1.34	1	1	1	2	1	23.768	23.768	2;3	4.6929E-11	19899	DP1145_10	140.63	99.548			122160000	260	419	245	400;401;402;403;404;405	570;571;572;573;574;575;576;577;578;579;580;581;582	571		13	9606
ASLSLAPVNIFK	Acetyl (Protein N-term)	1300.7391	0.73908786	400	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	3.25	1.48	1		1	1	1	23.442	23.442	2	1.1615E-06	20653	DP1145_8	128.38	104.61			35644000	261	400	246	406;407;408;409	583;584;585;586;587;588	586		5	9606
ASMGTLAFDEYGRPFLIIK	Acetyl (Protein N-term)	2170.1133	0.1132622	288	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	1	3	0			1			23.462	23.462	2	0.0037028	20708	DP1145_8	93.478	48.198			3620600	262	288	247	410	589	589		0	9606
ASMGTLAFDEYGRPFLIIK	Acetyl (Protein N-term);Oxidation (M)	2186.1082	0.10817683	288	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	1	1	3	0			1			22.428	22.428	2	8.1774E-119	19192	DP1145_8	209.25	166.44			5056500	263	288	247	411	590	590	267	0	9606
ASMQQQQQLASAR	Oxidation (M)	1461.6994	0.69942466	779	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		13.827	13.827	2	0.017391	5402	DP1145_9	90.653	55.961			0	264	779	248	412	591	591	639	1	9606
ASPSLERPEK	Acetyl (Protein N-term)	1154.5932	0.5931519	458	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	1	0	1	3	0			1			14.978	14.978	2	2.2852E-09	7935	DP1145_8	120.31	62.076			31854000	265	458	249	413	592	592		0	9606
ASPSPTDPVVPAVPIGPPPAGFR	Unmodified	2225.1845	0.18445331	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	2	2	2			20.176	20.176	2;3	2.2448E-54	16644	DP1145_7	234.04	213.08			1464799999.9999998	266	158	250	414;415;416;417;418;419	593;594;595;596;597;598;599;600;601;602;603;604	596		12	9606
ASQGSTLVHPFR	Unmodified	1298.6731	0.67313356	396	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	2	0		1				15.687	15.687	3	0.021631	9660	DP1145_7	63.408	43.75			0	267	396	251	420	605	605		1	9606
ASQPDLVDTPTSSKPQPK	Unmodified	1894.9636	0.96362108	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.8	0.748		2	2	1		14.777	14.777	2;3	4.4451E-08	7701	DP1145_8	127.78	101.07			358260000	268	276	252	421;422;423;424;425	606;607;608;609;610	609		5	9606
ASTEGANNMPK	Acetyl (Protein N-term)	1160.5132	0.51318702	272	P43004	SLC1A2	Excitatory amino acid transporter 2	yes	yes	1	0	0	1	0	1					15.586	15.586	2	0.038663	7073	DP1145_6	66.962	34.642			0	269	272	253	426	611	611		1	9606
ASVVTLPVYLNFTR	Unmodified	1578.877	0.87697832	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					21.625	21.625	2	0.019871	16405	DP1145_6	85.924	37.129			11600000	270	466	254	427	612	612		1	9606
ATAAPAGAPPQPQDLEFTK	Unmodified	1908.9581	0.95814177	202	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	4	0				1		17.908	17.908	2	8.5753E-52	11654	DP1145_9	190.37	150.79			0	271	202	255	428	613	613		1	9606
ATAGDTHLGGEDFDNR	Unmodified	1674.7234	0.72339081	148;181	P17066;P48741;P0DMV9;P0DMV8	HSPA6;HSPA7;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.33	0.471			2	1		15.562	15.562	2;3	0.00013418	8834	DP1145_8	110.8	76.109			2583000000	272	181;148	256	429;430;431	614;615;616;617	616		3	9606
ATALPLLK	Unmodified	825.53239	0.53238955	766	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		17.722	17.722	2	0.045732	11350	DP1145_9	82.305	32.28			41736000	273	766	257	432	618	618		1	9606
ATATPVPPR	Acetyl (Protein N-term)	950.51853	0.5185304	198	P20700	LMNB1	Lamin-B1	yes	yes	1	0	0	3	0			1			16.108	16.108	2	0.0064464	9776	DP1145_8	83.206	47.588			19609000	274	198	258	433	619	619		1	9606
ATENDIANFFSPLNPIR	Unmodified	1917.9585	0.95847612	231	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	4	0				2		22.611	22.611	2;3	0.00032538	18603	DP1145_9	120.59	55.355			4591600	275	231	259	434;435	620;621	620		1	9606
ATENDIYNFFSPLNPVR	Unmodified	1995.969	0.96904081	232;310	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	3	1.1	1		2	2		22.669	22.669	2;3	0	18599	DP1145_9	353.96	297.75			233550000	276	232;310	260	436;437;438;439;440	622;623;624;625;626;627;628;629;630	628		9	9606
ATFSGPAGPILSLNPQEDVEFQK	Acetyl (Protein N-term)	2486.2329	0.23291965	675	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	1	0	0	4	0				2		23.406	23.406	2	6.999199999999999E-296	19820	DP1145_9	272.09	233.02			1738000	277	675	261	441;442	631;632;633	632		3	9606
ATGRPECFLTIQEGLASK	Unmodified	1976.999	0.99896073	37	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2	0		1				18.456	18.456	3	0.012566	14003	DP1145_7	86.179	58.908			32113000	278	37	262	443	634;635	634		2	9606
ATGYPLAYVAAK	Unmodified	1223.655	0.65502388	221	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					18.1	18.1	2	0.015022	11089	DP1145_6	81.525	58.454			7425700	279	221	263	444	636	636		1	9606
ATIAGGGVIPHIHK	Unmodified	1369.783	0.78301836	145	Q71UI9;P0C0S5	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	yes	no	0	0	0	5	0					2	15.623	15.623	2;3	0.0022763	7650	DP1145_10	95.273	63.987			135960000	280	145	264	445;446	637;638;639	638		2	9606
ATISNDGATILK	Unmodified	1202.6507	0.65066678	649	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	3	0			1			16.44	16.44	2	8.3903E-07	10247	DP1145_8	125.23	52.996			14636000	281	649	265	447	640	640		0	9606
ATLGPTPTTPPQPPDPSQPPPGPMQH	Oxidation (M)	2658.2748	0.27480124	70	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	0	5	0					1	17.668	17.668	3	0.025002	11239	DP1145_10	41.491	19.627			23024000	282	70	266	448	641	641	57	1	9606
ATLNAFLYR	Unmodified	1067.5764	0.57637963	718	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			18.981	18.981	2	2.301E-10	14268	DP1145_8	148.04	95.64			70679000	283	718	267	449	642	642		1	9606
ATLQEILPEVLK	Unmodified	1352.7915	0.79151736	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	3	1		1		1		21.466	21.466	2	0.0011457	18488	DP1145_7	115.7	65.666			33620000	284	655	268	450;451	643;644	643		2	9606
ATNFLAHEK	Acetyl (Protein N-term)	1071.5349	0.53490874	225	P29692	EEF1D	Elongation factor 1-delta	yes	yes	1	0	0	4	0				1		17.422	17.422	2	0.0075253	10955	DP1145_9	78.264	42.908			72450000	285	225	269	452	645	645		1	9606
ATPLAVNSAASLWGPYK	Acetyl (Protein N-term)	1786.9254	0.92538508	609	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	1	0	0	1	0	1					23.124	23.124	2	1.3974E-47	18540	DP1145_6	176.05	146.51			2509200	286	609	270	453	646;647;648	648		3	9606
ATQQQHDFTLTQTADGR	Unmodified	1916.8977	0.89766678	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1.5	0.5	1	1				15.711	15.711	3	2.4993E-90	7347	DP1145_6	159.64	131.96			74683000	287	401	271	454;455	649;650	649		2	9606
ATSVLPR	Unmodified	742.43374	0.43373813	733	Q9P0W8	SPATA7	Spermatogenesis-associated protein 7	yes	yes	0	0	0	2.33	1.25	1	1		1		16.02	16.02	1	0.011567	10230	DP1145_7	105.2	1.9165			1751499999.9999998	288	733	272	456;457;458	651;652;653	652		1	9606
ATTATMATSGSARK	Acetyl (Protein N-term);Oxidation (M)	1410.6773	0.67729224	255	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	1	1	3	0			1			25.533	25.533	2	0.044085	23532	DP1145_8	42.336	17.21			0	289	255	273	459	654	654	237	1	9606
AVAFFLESIAMHDIIAAEK	Oxidation (M)	2091.0711	0.071063038	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22.19	22.19	3	0.011358	17195	DP1145_6	69.422	55.264			9475500	290	401	274	460	655;656	655	344	2	9606
AVCMLSNTTAIAEAWAR	Oxidation (M)	1879.8921	0.89205282	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	1	0	3	0			2			19.864	19.864	2;3	6.7336E-75	15583	DP1145_8	192.68	130.22			186750000	291	393;550;394	275	461;462	657;658;659	657	335	2	9606
AVCMLSNTTAIAEAWAR	Unmodified	1863.8971	0.89713819	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	0	4	0				1		21.159	21.159	2	4.1754999999999996E-36	16443	DP1145_9	207.95	130.28			0	292	393;550;394	275	463	660	660		1	9606
AVDIPHMDIEALK	Unmodified	1450.749	0.74900062	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	19.134	19.134	3	0.031375	13293	DP1145_10	68.676	53.131			57364000	293	380	276	464	661	661		1	9606
AVDIPHMDIEALKK	Oxidation (M)	1594.8389	0.83887826	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	1	5	0					2	16.245	16.245	2;3	3.5479E-05	8861	DP1145_10	124.39	90.499			296530000	294	380	277	465;466	662;663;664	664	323	3	9606
AVDIPHMDIEALKK	Unmodified	1578.844	0.84396364	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	5	0					1	17.948	17.948	3	0.016935	11546	DP1145_10	86.699	50.936			75282000	295	380	277	467	665	665		1	9606
AVDPEDDFQR	Unmodified	1190.5204	0.52038089	650	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		16.38	16.38	2	0.0016027	9274	DP1145_9	124.92	101.85			142830000	296	650	278	468	666;667;668	667		3	9606
AVDSLVPIGR	Unmodified	1025.5869	0.58694431	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	2	1	1		1			17.939	17.939	2	5.5145E-75	12515	DP1145_8	201.39	145.71			717190000	297	215	279	469;470	669;670;671	670		3	9606
AVDSQILPK	Unmodified	969.5495	0.54949617	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	2.5	1.5	1			1		16.143	16.143	2	0.023576	8713	DP1145_9	87.696	38.941			292730000	298	419	280	471;472	672;673;674	673		3	9606
AVFADLDLR	Acetyl (Protein N-term)	1060.5553	0.55530983	398	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	1	0	0	4	0				1		23.532	23.532	2	0.0014674	19889	DP1145_9	95.531	57.972			4645300	299	398	281	473	675	675		1	9606
AVFPSIVGR	Unmodified	944.54435	0.54435122	337;389	P60709;P63267;P68133;P68032;P62736;Q6S8J3;A5A3E0;P0CG38;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;POTEE;POTEF;POTEI;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	3.67	1.25		1		1	1	18.489	18.489	2	4.3671E-06	12554	DP1145_9	139.68	85.13			278640000	300	337;389	282	474;475;476	676;677;678;679;680	679		5	9606
AVFPSIVGRPR	Unmodified	1197.6982	0.6982261	337;389	P60709;P63267;P68133;P68032;P62736;Q6S8J3;A5A3E0;P0CG38;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;POTEE;POTEF;POTEI;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	4	0				1		17.022	17.022	2	0.0042787	10188	DP1145_9	101.25	71.876			39503000	301	337;389	283	477	681	681		0	9606
AVFQANQENLPILK	Unmodified	1583.8671	0.86714192	112	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	4	0				1		19.291	19.291	2	0.012295	13759	DP1145_9	107.83	72.121			0	302	112	284	478	682	682		1	9606
AVFVDLEPTVIDEVR	Unmodified	1700.8985	0.89850163	393;550	P68363;Q71U36	TUBA1B;TUBA1A	Tubulin alpha-1B chain;Tubulin alpha-1A chain	no	no	0	0	0	3.25	1.48	1		1	1	1	21.206	21.206	2	9.718E-244	17457	DP1145_8	263.3	198.46			3115299999.9999995	303	393;550	285	479;480;481;482	683;684;685;686;687	686		5	9606
AVGASFPLYEPAK	Unmodified	1348.7027	0.70270235	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.697	18.697	2	0.044553	14290	DP1145_7	70.412	47.672			194050000	304	276	286	483	688	688		0	9606
AVGHPFVIQLGR	Unmodified	1292.7353	0.73533988	44	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				17.799	17.799	3	0.0044773	13207	DP1145_7	86.344	60.644			54669000	305	44	287	484	689;690	690		2	9606
AVLLDLEPR	Unmodified	1024.5917	0.59169534	204	Q9NRH3;P23258	TUBG2;TUBG1	Tubulin gamma-2 chain;Tubulin gamma-1 chain	yes	no	0	0	0	3	0			1			19.024	19.024	2	0.0062899	14292	DP1145_8	96.492	63.679			25653000	306	204	288	485	691	691		1	9606
AVLVDLEPGTMDSVR	Oxidation (M)	1616.808	0.80797206	395	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	yes	no	0	1	0	2.5	1.12	1	1	1	1		18.649	18.649	2	6.0229E-12	13757	DP1145_8	145.14	123.57			794220000	307	395	289	486;487;488;489	692;693;694;695;696	694	340	5	9606
AVLVDLEPGTMDSVR	Unmodified	1600.8131	0.81305744	395	P68371;P04350;Q3ZCM7	TUBB4B;TUBB4A;TUBB8	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain	yes	no	0	0	0	3	0			1			19.624	19.624	2	7.4817E-07	15194	DP1145_8	132.03	81.237			532560000	308	395	289	490	697;698	697		2	9606
AVMLLHTHTITSR	Oxidation (M)	1494.7977	0.79768214	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	1	0	1					14.993	14.993	3	0.027104	6180	DP1145_6	66.989	42.475			0	309	608	290	491	699	699	524	1	9606
AVNYVGAGTVEFIMDSK	Oxidation (M)	1815.8713	0.8713006	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.5	1.12	1	1	1	1		19.668	19.668	2	2.4669E-90	15164	DP1145_8	201.08	144.88			584290000	310	639	291	492;493;494;495	700;701;702;703;704;705;706	702	538	7	9606
AVNYVGAGTVEFIMDSK	Unmodified	1799.8764	0.87638598	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.33	0.471		2	1			21.05	21.05	2;3	0.0015811	17286	DP1145_8	117.07	87.522			379680000	311	639	291	496;497;498	707;708;709	709		3	9606
AVPLALALISVSNPR	Unmodified	1519.9086	0.9086128	443	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	2	0		1				22.028	22.028	2	0.008091	19353	DP1145_7	88.803	76.64			24300000	312	443	292	499	710	710		1	9606
AVSDASAGDYGSAIETLVTAISLIK	Unmodified	2451.2745	0.27445011	504	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	3	0			2			26.109	26.109	2;3	7.9827E-08	24310	DP1145_8	146.58	125.87			4617000	313	504	293	500;501	711;712;713;714;715;716	715		6	9606
AVSVTPIR	Acetyl (Protein N-term)	883.51272	0.51271674	710	Q9NR56	MBNL1	Muscleblind-like protein 1	yes	yes	1	0	0	2.5	1.5	1			1		17.722	17.722	2	0.026811	11138	DP1145_9	60.358	7.7218			657450000	314	710	294	502;503	717;718	718		2	9606
AVTEQGAELSNEER	Unmodified	1531.7114	0.71142914	219	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	5	0					1	15.114	15.114	2	8.762499999999999E-50	7094	DP1145_10	178.71	134.76			17889000	315	219	295	504	719	719		0	9606
AVTLDKDAYYR	Acetyl (Protein N-term)	1355.6721	0.67213051	783	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	1	1	0	1					18.108	18.108	2	0.018756	11072	DP1145_6	93.111	55.555			0	316	783	296	505	720	720		1	9606
AVVMDLLR	Oxidation (M)	931.51609	0.51608756	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.754	17.754	2	0.014899	10293	DP1145_6	91.626	55.441			316320000	317	438	297	506	721;722	721	382	2	9606
AVVMDLLR	Unmodified	915.52117	0.52117293	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.355	19.355	2	0.03847	13110	DP1145_6	87.754	39.906			541270000	318	438	297	507	723	723		1	9606
AVVVCPKDEDYK	Unmodified	1421.6861	0.68606601	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	2	0		1				14.737	14.737	3	0.037551	8173	DP1145_7	83.081	58.73			55119000	319	412	298	508	724	724		0	9606
AYGENIGYSEK	Unmodified	1229.5564	0.55643205	113	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	5	0					1	15.802	15.802	2	0.020209	8147	DP1145_10	100.48	42.517			0	320	113	299	509	725	725		1	9606
AYGGAYDVMSSK	Oxidation (M)	1263.5442	0.5441528	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		15.198	15.198	2	0.011624	7446	DP1145_9	77.288	58.017			112270000	321	116	300	510;511	726;727	727	96	2	9606
AYGGAYDVMSSK	Unmodified	1247.5492	0.54923818	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.923	16.923	2	0.042074	11004	DP1145_8	69.01	32.317			45553000	322	116	300	512	728	728		1	9606
AYHEQLSVAEITNACFEPANQMVK	Oxidation (M)	2765.2789	0.27890034	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	1	0	3	0			2			18.924	18.924	2;3	6.3995E-36	14178	DP1145_8	158.11	132.86			439530000	323	393;550;394	301	513;514	729;730;731	729	336	3	9606
AYHEQLSVAEITNACFEPANQMVK	Unmodified	2749.284	0.28398571	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	0	3.5	0.5			1	1		19.574	19.574	3	2.6672E-33	14161	DP1145_9	157.53	132.02			209670000	324	393;550;394	301	515;516	732;733	733		1	9606
AYIAYELNSVQHR	Unmodified	1562.7841	0.78414057	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	3					17.253	17.253	2;3	3.8241E-05	9832	DP1145_6	132.25	91.086			900740000	325	438	302	517;518;519	734;735;736;737	736		4	9606
AYNMVDIIHSVVDER	Oxidation (M)	1775.8512	0.85123386	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			18.823	18.823	3	0.00023238	13861	DP1145_8	118.08	99.984			524600000	326	116	303	520	738;739	738	97	2	9606
AYNMVDIIHSVVDER	Unmodified	1759.8563	0.85631924	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			21.524	21.524	2;3	0.0071509	18007	DP1145_8	99.834	61.469			41223000	327	116	303	521;522	740;741	740		2	9606
AYPYSQTGDDKVR	Unmodified	1498.7052	0.70522155	421	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	1.5	0.5	1	1				14.635	14.635	3	6.7251E-08	8124	DP1145_7	150.09	121.91			150770000	328	421	304	523;524	742;743	743		2	9606
AYSDQAIVNLLK	Unmodified	1333.7242	0.72416608	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					20.355	20.355	2	0.0077701	14629	DP1145_6	91.867	51.251			12241000	329	608	305	525	744	744		1	9606
AYSEALAAFGNGALFVEK	Unmodified	1856.9309	0.93086439	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.707	1	2	1			21.613	21.613	2;3	7.5898E-63	18709	DP1145_7	184	107.67			201710000	330	158	306	526;527;528;529	745;746;747;748	746		4	9606
AYSEVDGQVFQGR	Unmodified	1454.679	0.6790068	782	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	2	0		1				17.299	17.299	2	0.014374	12356	DP1145_7	102.52	31.582			42469000	331	782	307	530	749	749		1	9606
AYVEANQMLGDLIK	Oxidation (M)	1579.7916	0.79159371	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			18.985	18.985	2	2.0965E-11	14934	DP1145_7	138.25	112.13			579720000	332	158	308	531;532;533	750;751;752;753	751	159	4	9606
AYVWDNNKDLAEWLEK	Unmodified	1992.9581	0.95814177	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					20.99	20.99	3	0.0013901	15440	DP1145_6	116.86	85.543			0	333	438	309	534	754	754		1	9606
CADFGMAADK	Unmodified	1084.4318	0.43176558	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.076	16.076	2	0.0037346	9616	DP1145_8	99.013	73.119			149570000	334	116	310	535	755;756	756		2	9606
CEMEGCGTVLAHPR	Oxidation (M)	1631.6854	0.68543086	630	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	1	0	2	0		1				14.231	14.231	3	3.442E-49	7546	DP1145_7	166.62	126.56			9561600	335	630	311	536	757	757	534	0	9606
CFIVGADNVGSK	Unmodified	1265.6074	0.60742176	119	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		17.223	17.223	2	0.002139	10615	DP1145_9	106.62	73.62			193190000	336	119	312	537	758;759;760	758		3	9606
CHDKDINSVAIAPNDK	Unmodified	1795.8523	0.85229649	432	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	1	1	0	1					14.544	14.544	3	0.00040081	5500	DP1145_6	120.59	102.63			4470000	337	432	313	538	761	761		0	9606
CLAAEDVVFIGPDTHAIQAMGDKIESK	Oxidation (M)	2930.4154	0.41539382	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			2			18.924	18.924	3;4	2.7284E-18	14151	DP1145_8	130.83	114.55			292550000	338	115	314	539;540	762;763	763	86	2	9606
CLPPSEAASDNHLK	Unmodified	1537.7195	0.7194914	467	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2.5	0.5		1	1			14.332	14.332	3	0.0003131	7748	DP1145_7	115.37	95.057			56797000	339	467	315	541;542	764;765;766;767	764		4	9606
CPFTGNVSIR	Unmodified	1149.5601	0.56007764	363	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	5	0					1	16.969	16.969	2	1.0212000000000001E-25	9933	DP1145_10	167.23	82.985			221340000	340	363	316	543	768	768		1	9606
CSEGSFLLTTFPR	Unmodified	1513.7235	0.72351415	490	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	3	0			1			20.626	20.626	2	0.017344	16395	DP1145_8	80.834	37.206			41128000	341	490	317	544	769	769		1	9606
CTGGEVGATSALAPK	Unmodified	1417.6871	0.68712864	228	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	15.713	15.713	2	3.5704E-144	8033	DP1145_10	229	180.4			166830000	342	228	318	545	770	770		1	9606
CVFALREENK	Unmodified	1264.6234	0.62340617	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					15.795	15.795	2	8.2974E-06	7460	DP1145_6	106.68	42.263			23206000	343	438	319	546	771	771		0	9606
DAASAALADAAEELLDR	Unmodified	1700.8217	0.82170787	569	Q86X53	ERICH1	Glutamate-rich protein 1	yes	yes	0	0	0	4	1			1		1	23.842	23.842	2	2.6083E-194	21196	DP1145_8	241.84	134.05			13620000	344	569	320	547;548	772;773;774	773		3	9606
DAEAWFNEK	Unmodified	1108.4825	0.48253882	15	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;CON__Q148H6;Q7Z3Z0;Q7Z3Y8	KRT10;KRT28;KRT25;KRT27	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27	yes	no	0	0	0	1.5	0.5	1	1				18.855	18.855	2	5.9929E-26	14631	DP1145_7	166.68	98.308		+	36279000	345	15	321	549;550	775;776	776		2	9606
DAEDVDLNHYR	Unmodified	1345.5899	0.58985744	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				2		16.197	16.197	2;3	0.0034311	9088	DP1145_9	100.25	73.456			93832000	346	497	322	551;552	777;778	778		2	9606
DAELNILKYEAVPPMIEMGR	2 Oxidation (M)	2320.1443	0.14430434	537	Q68DQ2	CRYBG3	Very large A-kinase anchor protein	yes	yes	0	2	1	4	0				1		22.641	22.641	2	0.037489	18646	DP1145_9	59.248	25.562			4655600	347	537	323	553	779	779	475;476	0	9606
DAFLGSFLYEYSR	Unmodified	1566.7355	0.73545904	10	CON__P02769			yes	yes	0	0	0	3	2	1				1	22.984	22.984	2	1.1853E-32	18362	DP1145_6	164.33	142.77		+	12467000	348	10	324	554;555	780;781;782;783	782		4	
DAGTIAGLNVLR	Unmodified	1198.667	0.66698555	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	5	0					1	19.733	19.733	2	1.6297999999999998E-43	14134	DP1145_10	179.51	131.91			7772800	349	154	325	556	784	784		1	9606
DAGVIAGLNVLR	Unmodified	1196.6877	0.68772099	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	4	1			1		1	20.363	20.363	2	0.0011458	16294	DP1145_8	115.7	79.365			409420000	350	148	326	557;558	785;786	786		2	9606
DAHSIHGTNPQYLVEK	Unmodified	1807.8853	0.88531118	586	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	4	0				1		15.422	15.422	3	0.011818	7698	DP1145_9	94.339	51.309			19657000	351	586	327	559	787	787		0	9606
DALSKDVMVVGCVASVNPR	Unmodified	2016.0132	0.013230583	556	Q7Z3Z4	PIWIL4	Piwi-like protein 4	yes	yes	0	0	1	5	0					1	23.838	23.838	2	0.010767	19827	DP1145_10	92.781	31.671			13728000	352	556	328	560	788	788		0	9606
DAQVVQVVLDGLSNILK	Unmodified	1810.02	0.020013746	40	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	3	0			1			26.132	26.132	2	0.010084	24329	DP1145_8	124.45	70.105			1164500	353	40	329	561	789;790	789		2	9606
DCMEHAVLPVDGATLAEVMR	Oxidation (M)	2229.0228	0.022808992	72	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	1	0	2	0		1				15.045	15.045	3	0.023478	8843	DP1145_7	55.589	30.74			49754000	354	72	330	562	791	791	59	1	9606
DDCGTFEDTGPLLQFDYK	Unmodified	2119.9045	0.90445122	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0.816	1	1	1			21.938	21.938	2	0	19178	DP1145_7	302.63	273.57			385760000	355	474	331	563;564;565	792;793;794;795;796;797;798;799	797		8	9606
DDDIAALVVDNGSGMCK	Acetyl (Protein N-term);Oxidation (M)	1836.787	0.78697862	337	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	1	1	0	3	2	1				1	21.725	21.725	2	2.8739E-05	17007	DP1145_10	125.53	102.65			18832000	356	337	332	566;567	800;801;802	800	299	3	9606
DDGLFSGDPNWFPK	Unmodified	1593.71	0.70997257	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	22.415	22.415	2	3.4349E-05	17932	DP1145_10	126.66	103.14			22010000	357	253	333	568	803;804	803		2	9606
DDPSKPVHLTAFLGYK	Unmodified	1786.9254	0.92538508	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	2.5	1.5	1			1		18.624	18.624	3	0.01287	11933	DP1145_6	127.32	102.62			151700000	358	257	334	569;570	805;806	805		1	9606
DDVAPESGDTTVKKPESK	Unmodified	1901.9218	0.92181584	85	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			12.936	12.936	3	0.03981	5226	DP1145_8	73.279	51.746			1922600	359	85	335	571	807	807		0	9606
DELHIVEAEAMNYEGSPIK	Oxidation (M)	2160.0045	0.0044996155	127	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	4.33	0.471				2	1	20.127	20.127	2;3	4.1092000000000005E-64	15030	DP1145_9	187.75	161.31			2204600000	360	127	336	572;573;574	808;809;810;811;812;813	810	109	6	9606
DELHIVEAEAMNYEGSPIK	Unmodified	2144.0096	0.0095849934	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4.33	0.471				2	1	20.738	20.738	2;3	4.6503E-63	15958	DP1145_9	219.95	199.52			604730000	361	127	336	575;576;577	814;815;816;817;818	817		5	9606
DEPIHILNVAIK	Unmodified	1360.7715	0.77145062	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				19.169	19.169	2;3	3.298E-120	12730	DP1145_6	192.64	112.18			1291000000	362	438	337	578;579;580	819;820;821;822;823;824	822		6	9606
DETEFYLGKR	Unmodified	1256.6037	0.60371659	189	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	1	5	0					1	17.128	17.128	2	0.00082119	10002	DP1145_10	103.83	74.023			47507000	363	189	338	581	825	825		0	9606
DFEEYPEHR	Unmodified	1220.5098	0.5098162	44	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				15.539	15.539	2	0.011901	9356	DP1145_7	96.711	78.104			15282000	364	44	339	582	826	826		0	9606
DFFNYLPLSSQDPAPVR	Unmodified	1964.9632	0.96322715	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.2	1.17	2	1	1	1		22.347	22.347	2;3	3.3604000000000003E-107	18920	DP1145_8	238.2	155.42			787800000	365	116	340	583;584;585;586;587	827;828;829;830;831;832;833	832		7	9606
DFLAGGIAAAISK	Unmodified	1232.6765	0.6764876	162	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	1	0	1					20.997	20.997	2	0.00043495	15477	DP1145_6	117.09	65.142			38076000	366	162	341	588	834	834		0	9606
DFSPSGIFGAFQR	Unmodified	1427.6834	0.68336389	329	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	0	0	0	5	0					1	22.44	22.44	2	1.2577E-11	18019	DP1145_10	142.43	98.985			6310500	367	329	342	589	835;836;837	835		3	9606
DFTATFGPLDSLNTR	Unmodified	1653.7999	0.79985021	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.33	0.943	1	3	1	1		21.83	21.83	2	1.2686E-304	18013	DP1145_8	279.9	222.72			917550000	368	158	343	590;591;592;593;594;595	838;839;840;841;842;843;844;845;846;847;848	846		11	9606
DFTVASPAEFVTR	Unmodified	1438.7092	0.70924429	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	2.75	1.48	1	1	1		1	20.386	20.386	2	6.887E-119	16939	DP1145_7	215.72	143.11			992820000	369	41;438	344	596;597;598;599	849;850;851;852;853;854;855	853		6	9606
DFTVSAMHGDMDQKER	2 Oxidation (M)	1897.7935	0.79346098	338	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	2	1	4	0				1		14.177	14.177	3	0.012709	5793	DP1145_9	68.944	58.128			6266800	370	338	345	600	856	856	303;304	0	9606
DFYVAFQDLPTR	Unmodified	1470.7143	0.71432967	471	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	2	0		1				21.311	21.311	2	0.0069582	18240	DP1145_7	111.86	76.145			28246000	371	471	346	601	857	857		1	9606
DGNASGTTLLEALDCILPPTRPTDKPLR	Unmodified	3020.5601	0.56008422	391	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	2	2.33	0.943	1		2			21.997	21.997	3;4	3.0142E-07	18601	DP1145_8	84.942	63.733			111430000	372	391	347	602;603;604	858;859;860	860		3	9606
DGTVLCELINALYPEGQAPVKK	Unmodified	2414.2515	0.2515466	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	1	5	0					1	23.519	23.519	3	6.9783E-05	19545	DP1145_10	116.98	77.329			5443300	373	253	348	605	861;862;863	863		3	9606
DHAVVVGVYRPPPK	Unmodified	1532.8463	0.8463469	200	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4.5	0.5				1	1	15.071	15.071	3	0.01669	6961	DP1145_10	91.093	62.71			304270000	374	200	349	606;607	864;865	864		2	9606
DHPLPEVAHVK	Unmodified	1240.6564	0.65642086	166	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	5	0					1	14.508	14.508	3	0.010475	6200	DP1145_10	76.332	48.155			4363800	375	166	350	608	866	866		1	9606
DHQYGLPIK	Unmodified	1069.5556	0.55564418	660	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					16.319	16.319	2	6.7065E-05	8164	DP1145_6	133.58	92.153			0	376	660	351	609	867	867		1	9606
DHSVQLPKPVHKPNR	Unmodified	1750.9591	0.95908524	712	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	2	2	0		1				13.092	13.092	4	0.01115	6370	DP1145_7	110.15	83.118			637990	377	712	352	610	868;869;870	869		3	9606
DHTLVQTIAR	Unmodified	1152.6251	0.62512073	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	1	0	1					15.833	15.833	2	0.0047757	7633	DP1145_6	116.37	94.999			79559000	378	474	353	611	871;872	872		2	9606
DIDAFWLQR	Unmodified	1162.5771	0.57710791	82	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					21.734	21.734	2	3.5117E-06	16514	DP1145_6	140.98	93.241			9026900	379	82	354	612	873;874	873		2	9606
DIDIHEVR	Unmodified	995.50361	0.50360861	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2.5	0.5		1	1			15.648	15.648	2	0.00056992	8844	DP1145_8	117.04	68.532			367050000	380	412	355	613;614	875;876	876		0	9606
DIDILNSAGK	Unmodified	1044.5451	0.54513908	63	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1	0	1					18.455	18.455	2	0.0083236	11549	DP1145_6	89.355	17.853			7853000	381	63	356	615	877	877		0	9606
DIENQYETQITQIEHEVSSSGQEVQSSAK	Unmodified	3263.5066	0.5065879	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				21.492	21.492	3	3.452E-54	16215	DP1145_6	165.66	105.19		+	38392000	382	17	357	616;617	878;879	878		2	9606
DIHTLAQLISAYSLVDPEK	Unmodified	2112.1103	0.11028532	86	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	3	0			1			23.534	23.534	3	0.0061153	20821	DP1145_8	76.761	49.246			7759900	383	86	358	618	880	880		1	9606
DIIVIGNDITYR	Unmodified	1390.7456	0.7456298	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.255	20.255	2	5.957000000000001E-25	14391	DP1145_6	188.91	145.47			475580000	384	438	359	619	881	881		1	9606
DILIDPIR	Unmodified	953.55458	0.55458155	570	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				19.663	19.663	2	0.040032	15862	DP1145_7	87.323	40.328			13453000	385	570	360	620	882	882		1	9606
DILPCLDGYLK	Unmodified	1305.6639	0.663874	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.794	21.794	2	0.024385	16693	DP1145_6	75.294	25.579			12606000	386	401	361	621	883	883		1	9606
DINELNLPK	Unmodified	1054.5659	0.56587452	340	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	5	0					1	18.223	18.223	2	0.0033561	11928	DP1145_10	116.73	45.224			0	387	340	362	622	884	884		1	9606
DIPGLTDTTVPR	Unmodified	1283.6721	0.67213051	370	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4.5	0.5				1	1	18.808	18.808	2	5.2383E-18	13063	DP1145_9	154.85	154.85			505940000	388	370	363	623;624	885;886;887	887		3	9606
DIPSLPPLPPLPPLPPLDR	Unmodified	2043.1768	0.17684874	294	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	2	0		1				23.929	23.929	2	7.7628E-08	22125	DP1145_7	135.02	116.69			2310300	389	294	364	625	888;889	888		2	9606
DISEASVFDAYVLPK	Unmodified	1652.8298	0.82975336	377	P62854	RPS26	40S ribosomal protein S26	yes	yes	0	0	0	3	2	1				1	22.074	22.074	2	9.0099E-25	17550	DP1145_10	191.33	127.9			79688000	390	377	365	626;627	890;891	890		2	9606
DISSIGLK	Unmodified	831.47018	0.47018322	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1.5	0.5	1	1				17.426	17.426	2	0.00098675	12429	DP1145_7	115.46	28.524			81679000	391	566	366	628;629	892;893	893		0	9606
DIVEELSALK	Unmodified	1115.6074	0.60740498	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		2				21.229	21.229	1;2	2.3327000000000002E-33	18140	DP1145_7	155.42	74.23			91817000	392	276	367	630;631	894;895	895		1	9606
DIVINANPASPPLSLLVLHR	Unmodified	2138.2212	0.22117317	441	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	4	0				1		21.512	21.512	3	0.001169	17080	DP1145_9	104.45	91.023			7267200	393	441	368	632	896;897	896		2	9606
DKAPVQPQQSPAAAPGGTDEKPSGK	Unmodified	2460.2245	0.22448023	443	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	2	2	0		2				13.914	13.914	3;4	0.0011718	7113	DP1145_7	73.153	55.728			10677000	394	443	369	633;634	898;899	898		2	9606
DKFNECGHVLYADIK	Unmodified	1807.8563	0.85631924	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3	0			1			16.923	16.923	3	0.0011156	11038	DP1145_8	131.86	71.698			17445000	395	307	370	635	900	900		1	9606
DKLTPWEQFLEK	Unmodified	1532.7875	0.78749461	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	3	0			1			20.626	20.626	2	0.019694	16721	DP1145_8	98.04	36.361			19452000	396	688	371	636	901	901		0	9606
DKPHVNVGTIGHVDHGK	Unmodified	1808.9282	0.92817905	292	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	3.67	0.471			1	2		13.816	13.816	3;4	0.00084656	5499	DP1145_9	115.73	102.95			142700000	397	292	372	637;638;639	902;903;904;905;906	905		5	9606
DKPTETLLNTVK	Unmodified	1357.7453	0.74529545	641	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	0	1	2	0		1				16.899	16.899	2	1.7845E-06	11547	DP1145_7	141.89	104.82			49447000	398	641	373	640	907	907		1	9606
DLADELALVDVIEDK	Unmodified	1656.8458	0.84579735	104	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		23.819	23.819	2	6.3264E-17	20333	DP1145_9	147.24	114.02			2921700	399	104	374	641	908	908		1	9606
DLALVNDQLLGFVR	Unmodified	1571.8671	0.86714192	510	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				22.955	22.955	2	0.001603	20708	DP1145_7	110.86	75.969			4980100	400	510	375	642	909	909		1	9606
DLDELSRYPEDK	Unmodified	1478.6889	0.68890278	273	P43243	MATR3	Matrin-3	yes	yes	0	0	1	2	0		1				17.285	17.285	2	3.0268E-38	12213	DP1145_7	170.89	114.53			0	401	273	376	643	910	910		1	9606
DLEKPFLLPVEAVYSVPGR	Unmodified	2128.1568	0.15684158	292	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	3.5	0.5			1	1		21.792	21.792	3	0.000606	17286	DP1145_9	119.37	110.32			91704000	402	292	377	644;645	911;912;913	912		3	9606
DLENLGLTHLIGSPFLR	Unmodified	1894.0312	0.031247134	660	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					22.311	22.311	3	0.038164	17437	DP1145_6	59.673	38.918			4863400	403	660	378	646	914	914		1	9606
DLFEDELVPLFEK	Unmodified	1592.7974	0.7973906	65	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	3	0			1			23.98	23.98	2	0.0043003	21443	DP1145_8	123.62	77.156			5619500	404	65	379	647	915;916;917	916		3	9606
DLHDANTDLIGR	Unmodified	1338.6528	0.65279205	316	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	1	0	1					16.712	16.712	2	0.0066628	8813	DP1145_6	100.48	64.03			0	405	316	380	648	918	918		1	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	2 Oxidation (M)	4299.6572	0.65716542	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	2	0	4	0				1		17.022	17.022	4	3.4696E-26	10350	DP1145_9	113.33	113.02			44724000	406	268	381	649	919	919	240;241	1	9606
DLHDDDEDEEMLETADGESMNTEESNQGSTPSDQQQNK	Oxidation (M)	4283.6623	0.6622508	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	4	0				1		17.622	17.622	3	8.9016E-19	11399	DP1145_9	84.577	80.693			47425000	407	268	381	650	920	920	240;241	1	9606
DLIDNSFNR	Unmodified	1092.52	0.51998696	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				18.398	18.398	2	0.0045587	13985	DP1145_7	113.41	64.85			88638000	408	575	382	651	921	921		1	9606
DLIDYVR	Unmodified	892.46543	0.46543219	775	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	0	0	5	0					1	19.334	19.334	2	0.031974	13716	DP1145_10	88.643	13.926			4668600	409	775	383	652	922	922		0	9606
DLKPQNLLIDDKGTIK	Unmodified	1810.02	0.020013746	122	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	2	4	0				1		17.722	17.722	3	1.1815E-07	11385	DP1145_9	133.87	79.631			137350000	410	122	384	653	923	923		0	9606
DLLALFNSFKPK	Unmodified	1391.7813	0.78128702	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	1	2	0		1				22.884	22.884	2	2.1280000000000001E-41	20576	DP1145_7	172.98	156.26			68718000	411	688	385	654	924;925	925		2	9606
DLLDQILMLDPAKR	Oxidation (M)	1655.8916	0.89164211	456	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	1	1	4	0				1		22.372	22.372	2	7.211E-71	18197	DP1145_9	188.96	101.39			0	412	456	386	655	926	926	428	1	9606
DLLDTVLPHLYNETK	Unmodified	1769.92	0.91996535	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1.67	0.471	1	2				21.884	21.884	2;3	1.9193E-243	19186	DP1145_7	259.75	175.56			58942000	413	566	387	656;657;658	927;928;929;930;931;932;933;934	930		7	9606
DLLHPSPEEEKR	Unmodified	1448.726	0.72595699	270	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	1	1	0	1					14.874	14.874	3	6.5622E-23	6124	DP1145_6	155.97	112.79			26820000	414	270	388	659	935	935		1	9606
DLLLNTMSQEEK	Unmodified	1419.6915	0.69154532	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.319	19.319	2	1.6788E-06	12970	DP1145_6	128.91	93.753			6019000	415	401	389	660	936	936		1	9606
DLMGNILLCGGSTMLSGFPNR	Oxidation (M)	2268.0701	0.070093535	786	Q9Y615	ACTL7A	Actin-like protein 7A	yes	yes	0	1	0	5	0					1	21.185	21.185	3	0.037525	16332	DP1145_10	44.788	20.509			14693000	416	786	390	661	937	937	645	1	9606
DLPDVQELITQVR	Unmodified	1524.8148	0.814772	742	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	2	1	1		1			22.217	22.217	2	4.1477E-06	18940	DP1145_8	123.51	81.175			16256000	417	742	391	662;663	938;939	939		1	9606
DLPEHAVLK	Unmodified	1020.5604	0.56039521	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2.33	1.25	1	1		1		15.413	15.413	2	0.0031667	7696	DP1145_9	107.9	40.902			911920000	418	412	392	664;665;666	940;941;942	942		1	9606
DLQEFIPLINQITAK	Unmodified	1741.9614	0.96143623	60	O43592	XPOT	Exportin-T	yes	yes	0	0	0	1.5	0.5	1	1				23.827	23.827	2	0.00083728	21951	DP1145_7	150.14	112.72			17914000	419	60	393	667;668	943;944	944		2	9606
DLQMVNISLR	Oxidation (M)	1203.6282	0.6281572	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	0	4	0				1		18.617	18.617	2	1.322E-17	12742	DP1145_9	152.11	69.361			0	420	646	394	669	945	945	556	1	9606
DLQNVNITLR	Unmodified	1184.6513	0.65133548	238	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		18.523	18.523	2	0.02484	12755	DP1145_9	81.525	26.461			113940000	421	238	395	670	946	946		1	9606
DLSAAGIGLLAAATQSLSMPASLGR	Oxidation (M)	2386.2526	0.25260923	273	P43243	MATR3	Matrin-3	yes	yes	0	1	0	2.67	0.471		1	2			24.643	24.643	2	5.2755E-74	23225	DP1145_7	182.91	161.67			4170300	422	273	396	671;672;673	947;948;949;950	948	245	4	9606
DLSILSYLSQLQPPMPK	Oxidation (M)	1945.0231	0.023050213	528	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	1	0	2	0		1				24.159	24.159	2	0.0055745	22486	DP1145_7	106.26	84.345			2358100	423	528	397	674	951	951	472	1	9606
DLTTAGAVTQCYR	Unmodified	1454.6824	0.68237762	418	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	3.5	1.5		1			1	17.323	17.323	2	0.01939	12425	DP1145_7	79.201	38.478			125840000	424	418	398	675;676	952;953	953		2	9606
DLVEAVAHILGIR	Unmodified	1404.8089	0.80889876	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					24.978	24.978	2	4.5836E-06	21145	DP1145_6	120.27	73.086			1197900	425	290	399	677	954;955	954		2	9606
DLYANTVLSGGTTMYPGIADR	Oxidation (M)	2230.0576	0.057597819	337;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		20.347	20.347	2	1.3092E-29	15291	DP1145_9	159.4	117.4			10095000	426	337;389	400	678	956	956	300	0	9606
DMAEMQRVWKEK	Oxidation (M)	1565.733	0.73303298	488	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	1	2	4	0				1		18.023	18.023	2	0.013187	11723	DP1145_9	106.88	45.116			844250000	427	488	401	679	957;958	957	457	2	9606
DMAGLLKPTACTMLVSSLR	Oxidation (M)	2079.0527	0.052652557	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	1	2	0		1				19.763	19.763	3	2.7697E-07	16070	DP1145_7	132.51	96.795			206510000	428	158	402	680	959	959	160	0	9606
DMPIQAFLLYQEPVLGPVR	Oxidation (M)	2201.1555	0.15546137	9	CON__P02666			yes	yes	0	1	0	2.62	1.32	2	2	2	1	1	23.142	23.142	2;3	0	20172	DP1145_8	324.94	284.22		+	100030000	429	9	403	681;682;683;684;685;686;687;688	960;961;962;963;964;965;966;967;968;969;970;971;972	968	4	13	
DMPIQAFLLYQEPVLGPVR	Unmodified	2185.1605	0.16054675	9	CON__P02666			yes	yes	0	0	0	3.2	0.748		1	2	2		24.071	24.071	2;3	6.8192E-152	20641	DP1145_9	300.49	269.58		+	24608000	430	9	403	689;690;691;692;693	973;974;975;976;977;978;979;980;981;982;983	983		11	
DMTLEGDDLILEIE	Oxidation (M)	1620.744	0.7440344	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				24.359	24.359	2	2.0336E-34	22728	DP1145_7	165.83	136.06			9202700	431	158	404	694	984;985	984	161	2	9606
DNDVQALNKLLKYEDCK	Unmodified	2065.015	0.015004722	684	Q9H1D0	TRPV6	Transient receptor potential cation channel subfamily V member 6	yes	yes	0	0	2	5	0					1	20.558	20.558	2	0.0011329	14918	DP1145_10	124.39	68.661			1266400000	432	684	405	695	986	986		0	9606
DNHLLGTFDLTGIPPAPR	Unmodified	1933.0058	0.005760665	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			20.626	20.626	3	0.0067607	17692	DP1145_8	86.453	60.497			114700000	433	153	406	696	987	987		0	9606
DNIQGITKPAIR	Unmodified	1324.7463	0.7462985	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					3	15.985	15.985	2;3	1.2295999999999999E-117	8177	DP1145_10	202.96	145			3401199999.9999995	434	371	407	697;698;699	988;989;990	989		3	9606
DNLEFFLAGIGR	Unmodified	1350.6932	0.6932003	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					23.017	23.017	2	8.566099999999999E-43	18419	DP1145_6	174.02	136.83			4541700	435	290	408	700	991;992	992		2	9606
DNTCVVEFQFMLPTSHPNR	Oxidation (M)	2307.0412	0.041236248	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					19.955	19.955	3	0.0019611	14036	DP1145_6	105.5	84.904			93807000	436	438	409	701	993;994	993	383	2	9606
DNTQLLINQLWQLPTER	Unmodified	2081.0906	0.090552927	486	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				2		23.647	23.647	2;3	0	20031	DP1145_9	346.06	278.54			23881000	437	486	410	702;703	995;996;997;998	995		4	9606
DPAQPMSPGEATQSGAR	Oxidation (M)	1714.7581	0.75806175	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				14.331	14.331	2	0.00016018	7802	DP1145_7	122.52	98.844			24251000	438	655	411	704	999;1000	1000	561	2	9606
DPLEYSDVIPQAEK	Unmodified	1602.7777	0.77771779	446	Q13349	ITGAD	Integrin alpha-D	yes	yes	0	0	0	4	0				1		16.149	16.149	2	0.00087549	8929	DP1145_9	114.4	23.136			104370000	439	446	412	705	1001;1002	1002		2	9606
DPLLLAIIPK	Unmodified	1091.6954	0.69543213	699	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	1.5	0.5	1	1				22.356	22.356	2	0.00077857	19745	DP1145_7	127.46	127.46			19389000	440	699	413	706;707	1003;1004;1005;1006	1005		4	9606
DPSLPLLELQDIMTSVSGR	Unmodified	2070.0667	0.066705942	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					25.477	25.477	2	5.2583E-200	21801	DP1145_6	245.5	215.16			2670900	441	438	414	708	1007;1008	1008		2	9606
DPSLPLLELQDIMTSVSGR	Oxidation (M)	2086.0616	0.061620564	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	0		1				23.21	23.21	2	5.120199999999999E-19	20931	DP1145_7	151.3	114.62			5686500	442	438	414	709	1009;1010	1009	384	2	9606
DPTPSFYDLWAQEDPNAVLGR	Unmodified	2390.1179	0.11788989	464	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	2.5	0.5		1	1			23.483	23.483	2	1.7646E-294	21473	DP1145_7	272.96	251.19			10366000	443	464	415	710;711	1011;1012;1013	1011		3	9606
DPVLAPAVGADLLDYCLAR	Unmodified	2028.035	0.035011883	64	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					22.866	22.866	2	8.4008E-06	18205	DP1145_6	118.73	77.19			0	444	64	416	712	1014	1014		1	9606
DQAVENILVSPVVVASSLGLVSLGGK	Unmodified	2550.4269	0.42686843	299	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	3	0			1			25.422	25.422	3	2.2176E-05	23405	DP1145_8	82.627	63.334			1970100	445	299	417	713	1015	1015		1	9606
DQGGLEEQYMAR	Oxidation (M)	1411.6038	0.60379294	792				yes	yes	0	1	0	1	0	1					17.253	17.253	3	0.034917	9675	DP1145_6	56.205	46.362	+		3712100	446	792	418	714	1016	1016	648	1	9606
DQIPSPGLMVFPKPVTALEYTFSR	Oxidation (M)	2708.3884	0.38837443	320	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	1	1	4	0				1		21.938	21.938	3	0.0012619	17611	DP1145_9	74.251	47.165			6939700	447	320	419	715	1017	1017	288	1	9606
DQTPDENDQVIVK	Unmodified	1499.7104	0.71036651	729	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			16.058	16.058	2	0.022	9596	DP1145_8	77.288	46.601			56059000	448	729	420	716	1018;1019	1018		2	9606
DSEDNPQTLLFSATCPHWVFNVAK	Unmodified	2775.2963	0.29626496	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				22.244	22.244	3	1.2361E-66	19619	DP1145_7	171.39	142.93			0	449	709	421	717	1020	1020		1	9606
DSEEIDDVTR	Unmodified	1177.5099	0.50987578	772	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		16.137	16.137	2	0.00017578	8818	DP1145_9	131.5	103.68			40939000	450	772	422	718	1021;1022	1021		2	9606
DSGPLFNTDYDILK	Unmodified	1596.7672	0.7671531	487	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	3	0			1			21.467	21.467	2	0.038376	17772	DP1145_8	94.402	49.763			0	451	487	423	719	1023	1023		1	9606
DSNTILLPSNPGDVTSMVAQAMGVYGALTK	2 Oxidation (M)	3081.4999	0.49985173	751	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	2	0	4	0				1		22.4	22.4	3	3.922E-08	18299	DP1145_9	80.067	59.308			3182500	452	751	424	720	1024	1024	620;621	1	9606
DSRPSQAAGDNQGDEAKEQTFSGGTSQDTK	Unmodified	3111.3613	0.36132065	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	2	1.5	0.5	1	1				14.479	14.479	4	1.4693E-42	7850	DP1145_7	158.74	146.44			26081000	453	767	425	721;722	1025;1026	1026		2	9606
DSTLIMQLLR	Oxidation (M)	1204.6486	0.64855829	358;386;219;350	P63104;Q04917;P31946;P31947;P62258;P27348;P61981	YWHAZ;YWHAH;YWHAB;SFN;YWHAE;YWHAQ;YWHAG	14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein theta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	no	no	0	1	0	2.67	1.25	1		1	1		21.681	21.681	2	0.0015092	16326	DP1145_6	104.44	73.133			19627000	454	386;358;219;350	426	723;724;725	1027;1028;1029	1027	214	3	9606
DSVVSLESQK	Unmodified	1090.5506	0.55061839	591	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	3	0			1			16.084	16.084	2	0.02484	9642	DP1145_8	81.525	39.238			60243000	455	591	427	726	1030	1030		1	9606
DTAASGYGTQNIR	Unmodified	1352.6321	0.6320566	771	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		15.468	15.468	2	1.7742E-139	7867	DP1145_9	228.84	164.42			15914000	456	771	428	727	1031	1031		1	9606
DTGILDSIGR	Unmodified	1045.5404	0.54038805	107	P02686	MBP	Myelin basic protein	yes	yes	0	0	0	3.33	1.7	1			1	1	19.137	19.137	2	9.493299999999998E-19	13356	DP1145_10	163.15	88.85			341130000	457	107	429	728;729;730	1032;1033;1034	1032		3	9606
DTGKTPVEPEVAIHR	Unmodified	1647.858	0.8580338	339	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	1	5	0					2	15.117	15.117	3;4	4.391999999999999E-124	7079	DP1145_10	222.55	190.48			114980000	458	339	430	731;732	1035;1036;1037;1038	1036		4	9606
DTLFCYHK	Unmodified	1082.4855	0.48551571	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				16.452	16.452	2	0.045923	11099	DP1145_7	81.635	44.614			40291000	459	681	431	733	1039	1039		1	9606
DTLYEAVR	Unmodified	965.48181	0.48181054	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	16.903	16.903	2	3.1902E-58	9965	DP1145_10	197.65	106.66			177580000	460	380	432	734	1040	1040		1	9606
DTPGHGSGWAETPR	Unmodified	1466.6539	0.65385468	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				15.028	15.028	3	0.00017794	8830	DP1145_7	118.73	88.925			47440000	461	80	433	735	1041	1041		0	9606
DTPTSAGPNSFNK	Unmodified	1334.6103	0.61025853	602	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	5	0					1	15.177	15.177	2	0.0013669	7288	DP1145_10	110.39	64.789			68648000	462	602	434	736	1042;1043	1043		2	9606
DTSYLFITGPDVVK	Unmodified	1553.7977	0.79772495	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.125	21.125	2	0	17240	DP1145_8	318.59	287.52			1014599999.9999999	463	116	435	737	1044;1045	1044		2	9606
DTVTISGPQAPVFEFVEQLRK	Unmodified	2360.2376	0.23761109	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	2	0		1				22.458	22.458	3	8.6782E-06	20007	DP1145_7	122.13	83.394			4455700	464	290	436	738	1046	1046		1	9606
DVDDGLQAAEEVGYPVMIK	Oxidation (M)	2063.9721	0.97213685	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.644	20.644	3	0.0053456	14989	DP1145_6	76.068	56.175			36151000	465	438	437	739	1047	1047	385	1	9606
DVDDGLQAAEEVGYPVMIK	Unmodified	2047.9772	0.97722223	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				21.559	21.559	2;3	3.3709E-175	16286	DP1145_6	312.91	282.89			191090000	466	438	437	740;741;742	1048;1049;1050;1051;1052	1050		5	9606
DVDFMYVELIQR	Oxidation (M)	1542.7388	0.73882986	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					21.386	21.386	2	0.0011034	15877	DP1145_6	112.75	81.326			3421700	467	401	438	743	1053	1053	345	1	9606
DVEDFLSPLLGK	Unmodified	1331.6973	0.69728262	448	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	5	0					1	23.394	23.394	2	0.0046587	19380	DP1145_10	98.048	55.45			2343800	468	448	439	744	1054	1054		1	9606
DVESYIHR	Unmodified	1017.488	0.48795855	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				16.114	16.114	2	0.027385	10378	DP1145_7	104.21	76.327			35330000	469	709	440	745	1055	1055		0	9606
DVFQLKDLEK	Unmodified	1233.6605	0.66050319	671	Q9BWT6	MND1	Meiotic nuclear division protein 1 homolog	yes	yes	0	0	1	5	0					1	17.948	17.948	3	0.0054566	11522	DP1145_10	83.869	0			49286000	470	671	441	746	1056	1056		1	9606
DVFRDPALKR	Unmodified	1215.6724	0.67240528	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	15.252	15.252	3	0.03331	7370	DP1145_10	80.24	40.238			190290000	471	345	442	747	1057	1057		0	9606
DVLAHQVPNAK	Unmodified	1190.6408	0.6407708	730	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	0	3.5	0.5			1	1		14.657	14.657	2	3.0377E-22	7336	DP1145_8	147.4	97.982			138600000	472	730	443	748;749	1058;1059	1058		1	9606
DVNAAIAAIK	Unmodified	984.5604	0.56039521	394	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	5	0					1	18.248	18.248	2	0.019165	11950	DP1145_10	85.676	20.429			7368100	473	394	444	750	1060	1060		1	9606
DVNAAIATIK	Unmodified	1014.571	0.5709599	393;550	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3.25	1.48	1		1	1	1	17.611	17.611	1;2	0.0031853	12087	DP1145_8	105.4	66.374			1317800000	474	393;550	445	751;752;753;754	1061;1062;1063;1064;1065	1064		5	9606
DVNQQEFVR	Unmodified	1133.5465	0.54653606	256	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	16.247	16.247	2	0.019154	8825	DP1145_10	107.29	64.048			0	475	256	446	755	1066	1066		1	9606
DVPVAEEVSALFAGELNPVAPK	Unmodified	2251.1736	0.17361385	43	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	2	0		1				24.64	24.64	2	1.8827E-98	23205	DP1145_7	199.15	166.71			1553800	476	43	447	756	1067;1068;1069	1068		3	9606
DVWGIEGPIDAAFTR	Unmodified	1645.81	0.81002097	22	CON__Q3ZBS7;P04004	VTN	Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B	yes	no	0	0	0	3	0			1			22.888	22.888	2	6.5385E-59	19833	DP1145_8	182.41	141.68		+	15674000	477	22	448	757	1070	1070		1	9606
DYEVELLR	Unmodified	1035.5237	0.52367535	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				19.314	19.314	2	0.014429	15346	DP1145_7	116.88	56.766			0	478	184	449	758	1071	1071		1	9606
DYFEQYGK	Unmodified	1048.4502	0.45017606	143	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		17.82	17.82	2	0.0087621	11547	DP1145_9	100.74	56.347			64457000	479	143	450	759	1072;1073	1073		2	9606
DYHFKVDNDENEHQLSLR	Unmodified	2258.0352	0.035222893	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				2		16.723	16.723	3;4	2.9943E-38	9732	DP1145_9	165.16	135.35			557270000	480	127	451	760;761	1074;1075	1075		1	9606
DYLHLPPEIVPATLR	Unmodified	1732.9512	0.9512059	283	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					1	20.712	20.712	3	0.032122	15715	DP1145_10	59.709	40.877			9685900	481	283	452	762	1076	1076		1	9606
DYPVVSIEDPFDQDDWGAWQK	Unmodified	2509.1074	0.10738478	125	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	3	0			1			23.685	23.685	2	2.6749999999999997E-21	21017	DP1145_8	147.39	117.67			2871100	482	125	453	763	1077	1077		1	9606
EAAENSLVAYK	Unmodified	1193.5928	0.59281755	358	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	5	0					1	16.243	16.243	2	1.3448E-12	8846	DP1145_10	146.69	87.776			27037000	483	358	454	764	1078	1078		1	9606
EAAGTTAAAGTGGATEQPPR	Unmodified	1812.8602	0.86021864	57	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				14.431	14.431	2	2.2614E-131	7837	DP1145_7	219.95	168.69			13519000	484	57	455	765	1079	1079		1	9606
EAAPAPPTEEDIWFDDVDPADIEAAIGPEAAK	Unmodified	3349.5514	0.55141283	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			23.474	23.474	3	4.9512E-05	20763	DP1145_8	57.997	39.389			5965800	485	679	456	766	1080	1080		1	9606
EAAWAITNATSGGSAEQIK	Unmodified	1903.9276	0.92756992	309	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	3	0			1			18.223	18.223	2	4.8572E-152	13119	DP1145_8	229.48	176.46			16537000	486	309	457	767	1081	1081		1	9606
EAMEDGEIDGNKVTLDWAKPK	Oxidation (M)	2361.1158	0.11584098	194	P19338	NCL	Nucleolin	yes	yes	0	1	2	3	0			1			17.623	17.623	4	0.039655	12058	DP1145_8	52.498	31.911			85442000	487	194	458	768	1082	1082	195	0	9606
EAMVQAEEAAAEITR	Oxidation (M)	1633.7618	0.76175015	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	3	0			1			17.623	17.623	2	9.7487E-05	12164	DP1145_8	124.12	78.471			70539000	488	38	459	769	1083	1083	27	1	9606
EANNFLWPFK	Unmodified	1264.6241	0.6240581	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	2.5	1.5	1			1		21.865	21.865	2	0.0075308	17448	DP1145_9	111.74	111.74			161520000	489	191	460	770;771	1084;1085;1086	1085		3	9606
EAPPMEKPEVVK	Unmodified	1352.701	0.70098779	374	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	1	5	0					1	14.697	14.697	3	0.019488	6461	DP1145_10	106.16	80.177			34772000	490	374	461	772	1087	1087		1	9606
EASFEYLQNEGER	Unmodified	1570.69	0.68996541	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					18.054	18.054	2	1.7061E-139	11019	DP1145_6	228.98	210.31			697970000	491	41;438	462	773	1088;1089	1088		2	9606
EAVGDLLDAFK	Unmodified	1176.6027	0.60265396	423	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1.5	0.5	1	1				22.356	22.356	2	0.0010103	17429	DP1145_6	120.87	57.335			202020000	492	423	463	774;775	1090;1091	1090		1	9606
EAVVYLAHTHDGAR	Unmodified	1537.7637	0.76373948	495	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	3	0			1			14.632	14.632	3	0.0014533	7357	DP1145_8	139.48	110.26			82858000	493	495	464	776	1092	1092		1	9606
ECADLWPR	Unmodified	1045.4651	0.46511462	373	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	18.046	18.046	2	0.0042008	11383	DP1145_10	107.32	46.557			81767000	494	373	465	777	1093	1093		1	9606
ECLPLIIFLR	Unmodified	1272.7264	0.72641468	367	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		23.127	23.127	2	0.0018221	19255	DP1145_9	108.46	81.132			4378600	495	367	466	778	1094;1095	1094		2	9606
ECPSDECGAGVFMASHFDR	Unmodified	2170.8507	0.85065829	385	P62979;A0A2R8Y422	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	no	0	0	0	5	0					1	18.648	18.648	3	6.2016E-08	12507	DP1145_10	139.39	125.35			19933000	496	385	467	779	1096	1096		1	9606
EDELWASFLNDVGPK	Unmodified	1718.8152	0.81516593	740	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	0	4	0				1		23.143	23.143	2	7.7065E-74	19305	DP1145_9	196.67	156.82			12285000	497	740	468	780	1097;1098;1099	1097		3	9606
EDGNEEDKENQGDETQGQQPPQR	Unmodified	2627.0968	0.096773109	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0.816			1	1	1	13.012	13.012	3	0	4436	DP1145_9	306.67	289.24			192770000	498	390	469	781;782;783	1100;1101;1102;1103;1104;1105;1106;1107;1108;1109;1110;1111	1105		12	9606
EDITHSAQHALR	Unmodified	1376.6797	0.6796755	641	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	0	0	3	0			1			14.377	14.377	3	0.025411	7111	DP1145_8	64.64	34.248			13582000	499	641	470	784	1112	1112		1	9606
EDLKVSIHQMEMERIR	2 Oxidation (M)	2045.0034	0.0033941785	659	Q9BRT9	GINS4	DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed	yes	yes	0	2	2	5	0					1	23.9	23.9	2	0.018078	20095	DP1145_10	83.081	11.928			0	500	659	471	785	1113	1113	568;569	1	9606
EDLTEIRDMLLANK	Oxidation (M)	1675.8451	0.84508585	119	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	1	1	4	0				1		19.723	19.723	3	0.0045521	14494	DP1145_9	105.2	62.162			188860000	501	119	472	786	1114	1114	102	1	9606
EDLTEIRDMLLANK	Unmodified	1659.8502	0.85017123	119	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	1	4	0				1		20.816	20.816	2	0.043978	15848	DP1145_9	87.568	48.302			9482200	502	119	472	787	1115	1115		0	9606
EDPFVFIPEDDPLFPPIEK	Unmodified	2243.1038	0.10380295	429	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				23.816	23.816	2	0.0035667	21973	DP1145_7	134.61	92.619			0	503	429	473	788	1116	1116		1	9606
EDRHMVR	Oxidation (M)	957.44505	0.44504788	196	P20023	CR2	Complement receptor type 2	yes	yes	0	1	1	3	0			1			23.64	23.64	1	0.040155	20813	DP1145_8	40.573	6.8343			5317000	504	196	474	789	1117	1117	196	0	9606
EDSTADDSKDSVAQGTTNVHSSEHAGR	Unmodified	2800.2132	0.21319985	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.67	0.943		2		1		12.927	12.927	4;5	4.1147E-08	4551	DP1145_9	91.733	86.279			50510000	505	276	475	790;791;792	1118;1119;1120;1121	1121		3	9606
EDVLTLLLPVMGDSK	Oxidation (M)	1644.8644	0.86442431	443	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	0	2	0		1				22.725	22.725	2	0.01991	20333	DP1145_7	89.283	45.864			0	506	443	476	793	1122	1122	419	1	9606
EEAAWASSSAGNPADGLATEPESVFALDVLR	Unmodified	3159.4997	0.49965203	83	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				2		23.176	23.176	3	1.0467E-76	19398	DP1145_9	179	153.18			6194900	507	83	477	794;795	1123;1124;1125	1123		3	9606
EEAISNMVVALK	Oxidation (M)	1318.6803	0.68025235	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	0	1	0	1					17.253	17.253	2	0.00068642	9855	DP1145_6	115.78	77.505			438160000	508	41;438	478	796	1126;1127	1126	31	2	9606
EEAISNMVVALK	Unmodified	1302.6853	0.68533773	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					19.255	19.255	2	1.5583E-07	13010	DP1145_6	155.06	122.33			99656000	509	41;438	478	797	1128	1128		1	9606
EEAQSLEDLAGFK	Unmodified	1435.6831	0.68308912	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				19.663	19.663	2	1.461E-05	16038	DP1145_7	123.96	74.897			54739000	510	276	479	798	1129	1129		1	9606
EEEIAALVIDNGSGMCK	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	389	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	1	1	0	3.33	1.7	1			1	1	23.036	23.036	2	2.9637E-18	19180	DP1145_9	149.69	104.85			31607000	511	389	480	799;800;801	1130;1131;1132;1133;1134;1135;1136	1134	327	7	9606
EEFLIPIYHQVAVQFADLHDTPGR	Unmodified	2794.4079	0.40786432	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.2	1.17	2	1	1	1		21.843	21.843	3;4	2.4111E-47	16766	DP1145_6	170.11	150.94			73308000	512	438	481	802;803;804;805;806	1137;1138;1139;1140;1141;1142;1143;1144;1145;1146;1147	1141		11	9606
EEGIGPENLR	Unmodified	1112.5462	0.54620171	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.555	16.555	2	0.00023439	8557	DP1145_6	129.42	68.593			196990000	513	438	482	807	1148	1148		1	9606
EEGTPLTLYYSHWR	Unmodified	1750.8315	0.83148469	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1	0	1					19.555	19.555	3	0.0038742	13092	DP1145_6	76.073	29.193			24180000	514	777	483	808	1149	1149		1	9606
EELEALFLPYDLK	Unmodified	1578.8181	0.81812604	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	1	0	1					22.8	22.8	2	1.5973E-11	18099	DP1145_6	173.64	94.572			5520900	515	681	484	809	1150;1151;1152;1153	1151		4	9606
EENKSDMNTVLNYIFSHAQVTK	Oxidation (M)	2583.2275	0.22751669	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					20.344	20.344	3;4	3.7921E-182	14519	DP1145_6	237.84	130.98			133790000	516	438	485	810;811	1154;1155	1155	386	2	9606
EENKSDMNTVLNYIFSHAQVTK	Unmodified	2567.2326	0.23260207	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					21.575	21.575	3;4	1.9757E-116	16321	DP1145_6	221.99	169.26			37354000	517	438	485	812;813	1156;1157;1158;1159	1158		4	9606
EEPGSDSGTTAVVALIR	Unmodified	1700.8581	0.85809337	48	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	3	0			1			19.535	19.535	2	0.032752	15003	DP1145_8	90.926	56.965			0	518	48	486	814	1160	1160		1	9606
EEPVSSGPEEAVGK	Unmodified	1413.6624	0.66235368	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			15.178	15.178	2	0.0051339	8094	DP1145_8	98.754	46.272			40904000	519	38	487	815	1161	1161		1	9606
EESQIPVDEVFFHR	Unmodified	1730.8264	0.82639932	421	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1	0	1					19.455	19.455	3	0.0022972	13286	DP1145_6	94.781	60.68			10507000	520	421	488	816	1162	1162		1	9606
EFFEIMPNYAK	Oxidation (M)	1403.6431	0.64313856	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.325	19.325	2	0.01033	14707	DP1145_8	82.75	61.752			172940000	521	116	489	817	1163	1163	98	1	9606
EFFEIMPNYAK	Unmodified	1387.6482	0.64822394	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.424	20.424	2	3.0583999999999997E-22	16342	DP1145_8	145.16	109.72			156270000	522	116	489	818;819	1164;1165	1164		1	9606
EFFNGKEPSR	Unmodified	1209.5778	0.57783619	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			14.978	14.978	3	0.015368	8073	DP1145_8	91.658	69.129			27671000	523	153	490	820	1166	1166		1	9606
EFHLNESGDPSSK	Unmodified	1445.6423	0.64228694	147	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	4	0				2		15.318	15.318	2;3	5.625099999999999E-38	7456	DP1145_9	167.12	139.03			121290000	524	147	491	821;822	1167;1168	1168		1	9606
EFRPEDQPWLLR	Unmodified	1584.8049	0.80487601	242	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3	0			1			19.325	19.325	3	3.4143E-32	14766	DP1145_8	152.69	112.81			92025000	525	242	492	823	1169;1170;1171	1170		3	9606
EGAFSNFPISEETIK	Unmodified	1667.8043	0.80426689	709;652	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	2	0		1				19.864	19.864	2	2.7963E-17	16204	DP1145_7	151.55	94.996			85424000	526	709;652	493	824	1172;1173	1173		2	9606
EGGFLLLHTLLR	Unmodified	1367.7925	0.79252041	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					21.453	21.453	2	0.0063805	16122	DP1145_6	118.03	97.062			9052700	527	290	494	825	1174	1174		1	9606
EGIPALDNFLDKL	Unmodified	1443.7609	0.76094551	168	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	2	0		1				23.659	23.659	2	0.00012848	21726	DP1145_7	128.03	87.976			5685800	528	168	495	826	1175;1176	1175		2	9606
EGLPLMVFANWR	Oxidation (M)	1447.7282	0.7282056	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2.5	1.12	1	1	1	1		22.039	22.039	2	3.026E-05	16867	DP1145_6	122.28	95.392			263210000	529	438	496	827;828;829;830	1177;1178;1179;1180;1181;1182	1177	387	6	9606
EGLPLMVFANWR	Unmodified	1431.7333	0.73329097	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.5	1.12	1	1	1	1		23.176	23.176	2	1.0829E-42	20255	DP1145_8	172.23	137.54			100960000	530	438	496	831;832;833;834	1183;1184;1185;1186;1187;1188	1186		6	9606
EGNVPNIIIAGPPGTGK	Unmodified	1632.8835	0.88352026	240	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	4	0				1		18.823	18.823	2	1.0922E-11	13041	DP1145_9	137.81	101.14			22495000	531	240	497	835	1189	1189		0	9606
EGPAVVGQFIQDVK	Unmodified	1485.7827	0.78274359	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1.5	0.5	1	1				19.957	19.957	2	1.1498E-45	16390	DP1145_7	177.57	129.48			196440000	532	566	498	836;837	1190;1191	1191		2	9606
EGQAQLPAVR	Unmodified	1067.5724	0.57235688	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	3	0			1			15.537	15.537	2	0.0053625	8820	DP1145_8	95.741	65.055			55273000	533	735	499	838	1192	1192		1	9606
EGQGPGPKRGTEPK	Unmodified	1436.7372	0.73719038	489	Q15113	PCOLCE	Procollagen C-endopeptidase enhancer 1	yes	yes	0	0	2	1	0	1					14.406	14.406	2	0.012954	5452	DP1145_6	113.67	58.607			1938700	534	489	500	839	1193	1193		1	9606
EGSIEIDIPVPK	Unmodified	1295.6973	0.69728262	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			19.548	19.548	2	1.9032E-16	15026	DP1145_8	172.98	128.6			892410000	535	639	501	840;841;842	1194;1195;1196;1197;1198;1199;1200	1199		7	9606
EGVLTGSPEQKEEAAK	Unmodified	1671.8315	0.83154427	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	1	0	2					14.444	14.444	2;3	1.9429E-05	5362	DP1145_6	130.69	75.901			15207000	536	608	502	843;844	1201;1202	1201		2	9606
EHALLAYTLGVK	Unmodified	1313.7343	0.73433683	391	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.75	1.09	1		2	1		18.331	18.331	2;3	5.5442E-18	13270	DP1145_8	154.84	101.75			582620000	537	391	503	845;846;847;848	1203;1204;1205;1206;1207	1204		3	9606
EHDPVGQMVNNPK	Oxidation (M)	1479.6776	0.67762659	322	P55060	CSE1L	Exportin-2	yes	yes	0	1	0	2	0		1				13.702	13.702	3	0.0034052	6719	DP1145_7	86.288	61.273			660430	538	322	504	849	1208;1209	1209	291	2	9606
EHDPVGQMVNNPK	Unmodified	1463.6827	0.68271197	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				14.841	14.841	3	6.7424E-30	8384	DP1145_7	128.88	90.941			0	539	322	504	850	1210	1210		1	9606
EIAEAYLGK	Unmodified	992.51786	0.51786169	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	1.63	1		1		1	16.893	16.893	2	0.015448	9119	DP1145_6	74.255	10.949			145100000	540	154	505	851;852;853	1211;1212;1213	1212		0	9606
EIAEAYLGYPVTNAVITVPAYFNDSQR	Unmodified	3000.4869	0.4869025	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			22.811	22.811	3	1.2576E-09	19645	DP1145_8	105.24	87.98			16704000	541	148	506	854	1214;1215	1214		2	9606
EIAQEFKTDLR	Unmodified	1348.6987	0.69867961	530	Q5TEC6	HIST2H3PS2	Histone H3	yes	yes	0	0	1	5	0					1	16.783	16.783	2	5.0299E-11	9607	DP1145_10	125.71	51.337			224110000	542	530	507	855	1216	1216		0	9606
EIERPFETYK	Unmodified	1310.6507	0.65066678	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.089	16.089	2	0.016921	10390	DP1145_7	89.886	21.503			23591000	543	276	508	856	1217	1217		0	9606
EIETYHNLLEGGQEDFESSGAGK	Unmodified	2509.1245	0.12449141	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0		1				18.896	18.896	3	0.023922	14852	DP1145_7	61.537	36.129		+	52044000	544	17	509	857	1218	1218		0	9606
EIFLSQPILLELEAPLK	Unmodified	1952.1234	0.12341618	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	2.71	1.03	1	2	2	2		23.784	23.784	2;3	0	21068	DP1145_8	305.3	305.3			631060000	545	251;352	510	858;859;860;861;862;863;864	1219;1220;1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233	1226		15	9606
EIGYPVMIK	Oxidation (M)	1064.5576	0.55761802	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			17.538	17.538	2	0.022289	11874	DP1145_8	87.754	87.754			651120000	546	115	511	865;866	1234;1235	1235	87	1	9606
EIIDLVLDR	Unmodified	1084.6128	0.61282471	393;550	P68363;Q71U36	TUBA1B;TUBA1A	Tubulin alpha-1B chain;Tubulin alpha-1A chain	no	no	0	0	0	3.2	1.33	1		2	1	1	20.797	20.797	1;2	3.5351999999999996E-157	16819	DP1145_8	224.36	150.1			1905399999.9999998	547	393;550	512	867;868;869;870;871	1236;1237;1238;1239;1240	1239		4	9606
EIKDILIQYDR	Unmodified	1404.7613	0.76127986	357	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					1	18.648	18.648	3	0.017682	12715	DP1145_10	88.155	47.046			166450000	548	357	513	872	1241	1241		1	9606
EILGTAQSVGCNVDGR	Unmodified	1674.7995	0.79953264	228	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.168	17.168	2	4.7938E-13	10412	DP1145_10	182.41	155.26			431550000	549	228	514	873	1242;1243	1242		2	9606
EIPSATQSPISK	Unmodified	1256.6612	0.66123147	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				15.74	15.74	2	0.015569	9704	DP1145_7	80.916	39.49			110680000	550	655	515	874	1244;1245	1244		2	9606
EITALAPSTMK	Oxidation (M)	1176.606	0.60602477	337;389	P60709;P63267;P68133;P68032;P62736;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	3	1.58	1	1		1	1	15.802	15.802	2	0.0027551	8186	DP1145_10	112.3	67.273			507680000	551	337;389	516	875;876;877;878	1246;1247;1248;1249;1250	1246	301	5	9606
EIVHLQAGQCGNQIGAK	Unmodified	1821.9156	0.91556545	395	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	2.33	0.943	1		2			15.781	15.781	2;3	4.357E-126	9259	DP1145_8	232.78	0			2125599999.9999998	552	395	517	879;880;881	1251;1252;1253;1254	1253		3	9606
EIVTNFLAGFEA	Unmodified	1309.6554	0.65541781	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			24.222	24.222	2	0.016196	21716	DP1145_8	80.219	62.16			18678000	553	215	518	882	1255	1255		1	9606
EKAEALEDLVGFK	Unmodified	1447.7559	0.75586013	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				19.093	19.093	2	2.4439E-15	15032	DP1145_7	181.4	91.515			67231000	554	276	519	883	1256	1256		1	9606
EKPQANVPSALPSLPAGSGLK	Unmodified	2060.1266	0.12660408	740	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	1	4	0				1		17.984	17.984	2	8.4274E-13	11771	DP1145_9	133.25	99.281			0	555	740	520	884	1257	1257		1	9606
EKPYFPIPEEYTFIQNVPLEDR	Unmodified	2723.3483	0.34828376	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	1.5	0.5	1	1				21.618	21.618	3	2.4756E-53	18719	DP1145_7	172.77	122.01			317510000	556	412	521	885;886	1258;1259;1260	1259		3	9606
EKVLATVTKPVGGDK	Unmodified	1540.8825	0.88245763	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	2	1	0	1					14.603	14.603	3	0.032693	5665	DP1145_6	106.6	74.173			1173800	557	419	522	887	1261	1261		1	9606
ELAEDGYSGVEVR	Unmodified	1422.6627	0.66268803	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	2.5	1.5	1			1		17.153	17.153	2	1.7868999999999997E-52	10569	DP1145_9	183.03	136.57			93865000	558	205	523	888;889	1262;1263	1263		2	9606
ELAILLGMLDPAEKDEK	Oxidation (M)	1899.9863	0.98633036	227	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	1	1	5	0					1	20.133	20.133	3	0.00025627	14793	DP1145_10	123.63	101.24			17853000	559	227	524	890	1264;1265;1266	1264	218	3	9606
ELALALQEALEPAVR	Unmodified	1621.9039	0.90392136	527	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		21.496	21.496	2	5.0239E-59	16981	DP1145_9	184.03	145.63			40378000	560	527	525	891	1267	1267		1	9606
ELAPAVSVLQLFCSSPK	Unmodified	1844.9706	0.97062071	787	Q9Y678;Q9UBF2	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	yes	no	0	0	0	1	0	1					23.008	23.008	2	0.041527	18463	DP1145_6	86.756	56.551			1351200	561	787	526	892	1268	1268		0	9606
ELAQIAGRPTEDEDEKEK	Unmodified	2056.9913	0.99129239	48	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	2	3	0			1			14.532	14.532	3	0.00059038	7167	DP1145_8	124.04	71.851			224050000	562	48	527	893	1269	1269		0	9606
ELAQQVQQVAAEYCR	Unmodified	1791.8574	0.85738187	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.424	19.424	2	1.1175000000000001E-190	14900	DP1145_8	247.29	187.45			126430000	563	186	528	894	1270;1271;1272	1271		3	9606
ELAQQVQQVADDYGK	Unmodified	1690.8162	0.81622856	612	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			18.881	18.881	2	2.4433E-71	14019	DP1145_8	188.91	137.64			0	564	612	529	895	1273	1273		1	9606
ELASLSFSGDYSGTR	Unmodified	1588.7369	0.73691561	794				yes	yes	0	0	0	2	0		1				18.797	18.797	2	0.0057286	14630	DP1145_7	105.17	10.856	+		34157000	565	794	530	896	1274	1274		1	9606
ELDLYDNQIKK	Unmodified	1377.714	0.71399532	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	1	4	0				1		16.581	16.581	3	0.0032227	9542	DP1145_9	131.52	76.433			0	566	497	531	897	1275	1275		1	9606
ELEEIVQPIISK	Unmodified	1396.7813	0.7813466	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			19.325	19.325	2	0.029608	14854	DP1145_8	73.499	73.499			70618000	567	153	532	898	1276	1276		1	9606
ELFQTPDHTEESTTDDKTTK	Unmodified	2322.0499	0.049929483	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				15.312	15.312	4	0.0073852	9162	DP1145_7	89.374	76.244			85528000	568	276	533	899;900	1277;1278	1278		0	9606
ELFQTPGHTEEAVAAGK	Unmodified	1783.8741	0.87407779	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.67	0.471	1	2				16.665	16.665	2;3	5.3303999999999995E-90	11260	DP1145_7	212.1	153.59			317580000	569	276	534	901;902;903	1279;1280;1281;1282	1282		4	9606
ELFQTPGHTEELVAAGK	Unmodified	1825.921	0.92102798	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	0			1			17.71	17.71	3	0.0082141	12324	DP1145_8	83.54	47.148			82952000	570	276	535	904	1283	1283		0	9606
ELFQTPGPSEESMTDEK	Oxidation (M)	1939.8357	0.83570295	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				17.416	17.416	2	0.013426	12591	DP1145_7	75.89	57.558			40114000	571	276	536	905	1284	1284	247	1	9606
ELFQTPGTDKPTTDEK	Unmodified	1805.8683	0.86832371	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.025	16.025	3	0.013837	10252	DP1145_7	111.07	62.606			363540000	572	276	537	906	1285;1286;1287	1286		3	9606
ELFQTPICTDKPTTHEK	Unmodified	2043.9935	0.993541	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.122	16.122	3	0.015073	10367	DP1145_7	114.29	90.397			125160000	573	276	538	907	1288	1288		1	9606
ELIEIISGAAALD	Unmodified	1313.7078	0.70784731	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		23.35	23.35	2	2.6605E-11	19625	DP1145_9	138.06	95.953			6718300	574	249	539	908	1289	1289		1	9606
ELIIGDR	Unmodified	814.45487	0.45486751	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		16.581	16.581	2	0.0025369	9549	DP1145_9	111.28	22.544			135790000	575	215	540	909;910	1290;1291	1291		2	9606
ELIPNIPFQMLLR	Oxidation (M)	1598.8854	0.88543452	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.707	1	2	1			22.54	22.54	2;3	4.9778E-08	19981	DP1145_7	130.98	82.699			1102600000	576	158	541	911;912;913;914	1292;1293;1294;1295;1296	1293	162	5	9606
ELIPNIPFQMLLR	Unmodified	1582.8905	0.8905199	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		23.408	23.408	2;3	6.712300000000001E-56	21339	DP1145_7	185.61	185.61			314210000	577	158	541	915;916;917;918;919	1297;1298;1299;1300;1301;1302;1303;1304;1305	1299		8	9606
ELISNSSDALDK	Unmodified	1290.6303	0.63032527	132	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	0	0	0	3	0			1			16.459	16.459	2	0.021744	10195	DP1145_8	76.332	31.31			17702000	578	132	542	920	1306	1306		1	9606
ELKEQLGEEIDSK	Unmodified	1516.7621	0.76206772	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	1	0	1					16.3	16.3	3	0.031534	8080	DP1145_6	77.74	51.329			16943000	579	709	543	921	1307	1307		1	9606
ELLADQNLK	Unmodified	1042.5659	0.56587452	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.83	1.34	1	2	1	1	1	19.821	19.821	2	3.6258E-59	10823	DP1145_7	190.73	73.569			14831000000	580	474	544	922;923;924;925;926;927	1308;1309;1310;1311;1312;1313;1314;1315	1311		8	9606
ELLDLAMQNAWFR	Oxidation (M)	1621.7923	0.79226242	570	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	1	0	2	0		1				21.889	21.889	2	0.0018009	19108	DP1145_7	103.26	57.602			5909900	581	570	545	928	1316	1316	498	1	9606
ELLEQISAFDNVPR	Unmodified	1629.8362	0.83623572	720	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	3	0			1			20.824	20.824	2	0.0074859	16808	DP1145_8	90.697	41.956			36863000	582	720	546	929	1317	1317		1	9606
ELLIQIFSTPR	Unmodified	1315.75	0.7499869	595	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	4	0				1		21.997	21.997	2	9.639799999999999E-28	17631	DP1145_9	166.34	102.77			17202000	583	595	547	930	1318	1318		1	9606
ELLITDLLPDNR	Unmodified	1410.7718	0.77184455	421	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1.5	0.5	1	1				22.008	22.008	2	2.3282000000000003E-84	19241	DP1145_7	202.44	131.06			28306000	584	421	548	931;932	1319;1320;1321;1322;1323;1324	1323		6	9606
ELLPLIYHHLLR	Unmodified	1515.8926	0.89256881	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	1.22		2	1		1	19.622	19.622	2;3	2.379E-11	15799	DP1145_7	139.43	120.38			188300000	585	451	549	933;934;935;936	1325;1326;1327;1328;1329;1330	1328		6	9606
ELMTHHVHTYGLIMGGSNR	2 Oxidation (M)	2184.0204	0.020441226	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	2	0	3	0			1			15.066	15.066	3	0.036531	8022	DP1145_8	60.134	36.763			0	586	719	550	937	1331	1331	599;600	1	9606
ELNEALELK	Unmodified	1057.5655	0.56554017	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			17.486	17.486	2	0.031125	11960	DP1145_8	82.426	17.859			59625000	587	110	551	938	1332	1332		1	9606
ELNEALELKDAQAGKEPGGSR	Unmodified	2211.1131	0.11313886	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	2	3	0			1			16.076	16.076	3	7.510699999999999E-21	9646	DP1145_8	147.49	120.46			66527000	588	110	552	939	1333	1333		1	9606
ELNVITETQCTLGLTALR	Unmodified	2031.067	0.067040293	600	Q8WUB8	PHF10	PHD finger protein 10	yes	yes	0	0	0	3	0			1			21.875	21.875	2	7.5017999999999995E-227	18451	DP1145_8	256.13	192.16			9082700	589	600	553	940	1334;1335	1335		2	9606
ELQDAFSR	Unmodified	964.46141	0.46140945	650	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		16.602	16.602	2	0.017343	9581	DP1145_9	113.5	54.717			0	590	650	554	941	1336	1336		1	9606
ELYDKGGEQAIK	Unmodified	1349.6827	0.68269519	230	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	1	4	0				1		14.704	14.704	3	0.0031634	6660	DP1145_9	107.03	51.942			30572000	591	230	555	942	1337	1337		1	9606
EMAQYASNITSVLCQFPSQQIANILDSHAATLNR	Oxidation (M)	3806.8356	0.83560715	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					23.067	23.067	3;4	6.2172E-78	18512	DP1145_6	180.36	164.97			7629300	592	438	556	943;944	1338;1339	1338	388	2	9606
EMGFTNMTEIQHK	2 Oxidation (M)	1596.6912	0.69122774	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	2	0	1	0	1					14.645	14.645	3	0.033736	5669	DP1145_6	46.88	29.094			5753000	593	719	557	945	1340	1340	601;602	0	9606
EMKPVIFLDVFLPR	Oxidation (M)	1718.9429	0.9429494	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	1	1	0	1					22.035	22.035	3	0.0073121	17011	DP1145_6	93.228	55.635			8116900	594	401	558	946	1341;1342	1342	346	2	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	2 Oxidation (M)	2851.2753	0.27527152	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	2	0	2.67	0.943	1	3	3	2		16.739	16.739	2;3;4	6E-54	11454	DP1145_7	169.15	147.83			11013000000	595	474	559	947;948;949;950;951;952;953;954;955	1343;1344;1345;1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359;1360;1361;1362	1354	441;442	20	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	Oxidation (M)	2835.2804	0.2803569	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.67	0.943	1	3	3	2		17.447	17.447	2;3;4	1.5053E-96	11987	DP1145_8	191.37	170.85			4813200000	596	474	559	956;957;958;959;960;961;962;963;964	1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374;1375;1376;1377;1378	1374	441;442	15	9606
EMLESAVLPPEDMSQSGPSGSHPQGPR	Unmodified	2819.2854	0.28544228	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	0.943	1	3	1	1		18.12	18.12	2;3;4	8.4383E-133	13566	DP1145_7	213.64	203.99			1865699999.9999998	597	474	559	965;966;967;968;969;970	1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390	1380		12	9606
EMQSVVQLIMTR	2 Oxidation (M)	1465.7269	0.72688497	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	2	0	2	0		1				18.797	18.797	2	0.037588	14506	DP1145_7	51.979	27.141			35072000	598	688	560	971	1391	1391	576;577	0	9606
ENAPAIIFIDEIDAIATK	Unmodified	1943.0252	0.025158703	274	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	3	0			2			24.707	24.707	2;3	7.0144E-27	22364	DP1145_8	159.18	106.1			9181900	599	274	561	972;973	1392;1393;1394	1392		3	9606
ENFQNWLK	Unmodified	1077.5243	0.52434406	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	19.104	19.104	2	1.0882E-08	13284	DP1145_10	143.02	11.988			0	600	253	562	974	1395	1395		1	9606
ENGMDVFR	Unmodified	966.42292	0.42291545	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				17.499	17.499	2	0.041944	12709	DP1145_7	86.794	38.878			96165000	601	158	563	975	1396;1397	1397		2	9606
ENIVEAIIHSPELIR	Unmodified	1731.9519	0.95193418	93	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		2				21.941	21.941	2;3	5.9357E-37	19226	DP1145_7	164.33	104.91			14281000	602	93	564	976;977	1398;1399	1399		1	9606
ENLESWLNYLK	Unmodified	1407.7034	0.70343063	668	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	3	0			1			22.566	22.566	2	0.03806	19339	DP1145_8	96.665	63.287			0	603	668	565	978	1400	1400		1	9606
ENNVDAVHPGYGFLSER	Unmodified	1902.886	0.88603946	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3	1		1		1		18.039	18.039	3	0.015715	11863	DP1145_9	92.439	49.256			1809699999.9999998	604	158	566	979;980	1401;1402	1402		2	9606
ENVNSLLPVFEEFLK	Unmodified	1776.9298	0.92980175	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	2	0		1				24.243	24.243	2	0.041037	22597	DP1145_7	114.24	81.985			0	605	608	567	981	1403	1403		1	9606
EPMIGVNQELAYFYPELFR	Oxidation (M)	2331.1246	0.12455517	7	CON__P02662			yes	yes	0	1	0	4	0				1		23.545	23.545	2	1.3678E-06	19907	DP1145_9	124.07	98.09		+	0	606	7	568	982	1404	1404	3	1	
EPPGLIFNK	Unmodified	1013.5546	0.55458155	83	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	4	0				1		17.866	17.866	2	0.031315	11703	DP1145_9	82.241	82.241			28914000	607	83	569	983	1405	1405		1	9606
EPPGLIFNKVEVSEDEPASK	Unmodified	2184.095	0.095029182	83	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	1	4	0				2		18.333	18.333	2;3	5.6631E-151	12415	DP1145_9	225.29	176.04			76752000	608	83	570	984;985	1406;1407	1406		2	9606
EQADFALEALAK	Unmodified	1304.6612	0.66123147	558	Q7Z406	MYH14	Myosin-14	yes	yes	0	0	0	2	0		1				19.436	19.436	2	0.0084084	15532	DP1145_7	99.973	0			0	609	558	571	986	1408	1408		1	9606
EQAELTGLR	Unmodified	1015.5298	0.52982336	627	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	4	0				1		16.093	16.093	2	4.2565E-12	8759	DP1145_9	150.4	34.028			0	610	627	572	987	1409	1409		1	9606
EQEPMPTVDSHEPR	Oxidation (M)	1666.7257	0.72569899	694	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	1	0	5	0					1	14.062	14.062	3	0.00010702	5567	DP1145_10	118.76	118.76			17081000	611	694	573	988	1410;1411	1410	583	2	9606
EQGVLSFWR	Unmodified	1120.5665	0.56654322	114;162	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		20.517	20.517	2	9.9317E-46	15528	DP1145_9	180.87	84.836			173980000	612	114;162	574	989	1412;1413	1412		2	9606
EQIVPKPEEEVAQK	Unmodified	1622.8516	0.85155143	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	3.75	1.64	1			1	2	15.277	15.277	2;3	9.665299999999999E-87	7245	DP1145_10	214.04	137.76			241380000	613	193	575	990;991;992;993	1414;1415;1416;1417;1418;1419;1420	1417		6	9606
EQIVPKPEEEVAQKK	Unmodified	1750.9465	0.94651445	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	2	5	0					2	14.508	14.508	3;4	8.3789E-05	6169	DP1145_10	128.22	100.13			75385000	614	193	576	994;995	1421;1422	1421		2	9606
EQLDNQLDAYMSK	Oxidation (M)	1569.6981	0.69808726	779	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	0	4	0				1		17.223	17.223	2	0.00083239	10733	DP1145_9	110.39	86.663			220500000	615	779	577	996	1423	1423	640	1	9606
EQLMTVLQAGK	Oxidation (M)	1232.6435	0.64347291	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				16.746	16.746	2	0.0053562	11465	DP1145_7	91.867	25.516			48427000	616	655	578	997	1424;1425	1425	562	2	9606
EQLMTVLQAGK	Unmodified	1216.6486	0.64855829	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				18.393	18.393	2	0.005163	13935	DP1145_7	123.86	53.044			0	617	655	578	998	1426	1426		1	9606
EQNVLHMLHQILTPFLLR	Oxidation (M)	2217.2092	0.20922827	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				22.19	22.19	3	0.035945	19704	DP1145_7	53.504	24.893			4271400	618	714	579	999	1427	1427	595	1	9606
EQPQLTSTCHIAISNSENLLGK	Unmodified	2439.2064	0.20638732	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.477	18.477	3	0.0071987	14065	DP1145_7	97.621	61.942			0	619	276	580	1000	1428	1428		1	9606
EQQIVIQSSGGLSKDDIENMVK	Oxidation (M)	2433.2057	0.20571862	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	1	1	3	0			1			17.623	17.623	3	0.015265	11977	DP1145_8	70.501	40.233			29621000	620	254	581	1001	1429	1429	236	1	9606
EQVANSAFVER	Unmodified	1248.6099	0.6098646	136	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2	0		1				15.94	15.94	2	5.1556E-13	10033	DP1145_7	179.1	137.22			70108000	621	136	582	1002	1430;1431	1430		2	9606
EREEFLIPIYHQVAVQFADLHDTPGR	Unmodified	3079.5516	0.55156844	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					21.151	21.151	4	3.451E-06	15756	DP1145_6	101.86	80.893			15646000	622	438	583	1003	1432	1432		1	9606
ERHPGSFDVVHVK	Unmodified	1505.7739	0.77391024	367	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	1	4	0				1		14.574	14.574	3	1.2497E-27	6468	DP1145_9	155.66	116.27			70235000	623	367	584	1004	1433	1433		0	9606
ERPGEQSEVAQLIQQTLEQER	Unmodified	2467.2303	0.23029389	640	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				21.28	21.28	3	0.0036712	18243	DP1145_7	90.758	58.677			5772000	624	640	585	1005	1434	1434		1	9606
ESADGLQGETQLLVSR	Unmodified	1701.8533	0.85334235	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				18.896	18.896	2	0.0089677	14887	DP1145_7	96.745	50.392			53052000	625	276	586	1006	1435	1435		1	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	Oxidation (M)	3342.5166	0.51664078	460	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	1	0	3	0			1			19.824	19.824	3	1.8361E-11	15363	DP1145_8	76.557	63.023			47921000	626	460	587	1007	1436	1436	432	1	9606
ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK	Unmodified	3326.5217	0.52172616	460	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	0	0	3	0			1			20.616	20.616	3	1.3124E-13	16672	DP1145_8	101	86.619			36594000	627	460	587	1008	1437;1438	1438		2	9606
ESGPSGIETELR	Unmodified	1273.615	0.61500956	593	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					17	17	2	0.043922	9286	DP1145_6	85.958	49.624			0	628	593	588	1009	1439	1439		1	9606
ESLCQAALGLILK	Unmodified	1414.7854	0.78538612	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		22.764	22.764	2	1.4309E-17	18757	DP1145_9	154.01	114.14			465100000	629	639	589	1010;1011;1012;1013	1440;1441;1442;1443;1444;1445;1446;1447	1446		8	9606
ESPELLELIEDLK	Unmodified	1526.808	0.80795528	708	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3	0			1			23.474	23.474	2	3.7639E-139	20667	DP1145_8	224.75	161.06			13441000	630	708	590	1014	1448;1449	1448		2	9606
ESTLHLVLR	Unmodified	1066.6135	0.61349341	385	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	3	1.63	1		1		1	16.915	16.915	2	6.5028E-74	9217	DP1145_6	201.49	142.67			281690000	631	385	591	1015;1016;1017	1450;1451;1452;1453;1454	1452		5	9606
ESVFTVEGGHR	Unmodified	1216.5836	0.58364985	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				2		15.473	15.473	2;3	0.0011963	7957	DP1145_9	81.017	46.262			128320000	632	646	592	1018;1019	1455;1456	1455		2	9606
ESYDDVSSFR	Unmodified	1203.5044	0.50439647	650	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		17.322	17.322	2	4.5304E-115	10611	DP1145_9	209.19	189.42			28743000	633	650	593	1020	1457	1457		0	9606
ESYSVYVYK	Unmodified	1136.539	0.53899107	66	Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	yes	no	0	0	0	5	0					1	17.347	17.347	2	1.6842E-07	10590	DP1145_10	120.46	69.121			1055299999.9999999	634	66	594	1021	1458	1458		0	9606
ETAAVIFLHGLGDTGHSWADALSTIR	Unmodified	2737.3824	0.38237785	92	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	5	0					1	22.419	22.419	3	5.6766E-48	18075	DP1145_10	195.13	165.33			9726900	635	92	595	1022	1459	1459		1	9606
ETANAIVSQQTPQR	Unmodified	1541.7798	0.77978347	265	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	4	0				1		15.318	15.318	2	0.0089663	7726	DP1145_9	87.667	33.916			29326000	636	265	596	1023	1460	1460		1	9606
ETFDDLPKWMKMIDK	2 Oxidation (M)	1927.906	0.90597154	540	Q6IQ22	RAB12	Ras-related protein Rab-12	yes	yes	0	2	2	5	0					1	19.641	19.641	2	0.028785	13754	DP1145_10	57.836	26.405			128630000	637	540	597	1024	1461	1461	479;480	1	9606
ETGGFSQEELLK	Unmodified	1336.6511	0.65106071	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2	0.707	1	2	1			18.019	18.019	1;2	7.4198E-119	13229	DP1145_7	221.68	145.51			19987000000	638	474	598	1025;1026;1027;1028	1462;1463;1464;1465;1466;1467;1468;1469;1470;1471	1465		10	9606
ETIELSPTGRPK	Unmodified	1326.7143	0.71432967	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	1.67	0.471	1	2				15.314	15.314	2;3	8.4482E-22	8954	DP1145_7	157.75	108.95			114770000	639	714	599	1029;1030;1031	1472;1473;1474	1473		2	9606
ETNPHHPPAWIASAR	Unmodified	1682.8277	0.82773672	89	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				15.197	15.197	3	0.015908	8931	DP1145_7	74.789	43.884			34724000	640	89	600	1032	1475	1475		0	9606
EVAAFAQFGSDLDAATQQLLSR	Unmodified	2337.1601	0.16008906	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			23.945	23.945	2	9.884299999999999E-295	21355	DP1145_8	272.96	227.68			14313000	641	215	601	1033	1476;1477	1476		2	9606
EVDEQMLAIQSK	Oxidation (M)	1405.6759	0.67589525	455;664	Q13509;Q9BUF5	TUBB3;TUBB6	Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	1	0	2.67	1.25	1		1	1		16.16	16.16	2	2.2567E-11	7977	DP1145_6	141.88	93.788			102960000	642	455;664	602	1034;1035;1036	1478;1479;1480	1478	427	3	9606
EVDEQMLNVQNK	Oxidation (M)	1461.677	0.67695789	395;131;460	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3	1.41	1	1	1	1	1	15.353	15.353	2	1.2203E-56	8507	DP1145_8	188.91	138.46			1225500000	643	131;395;460	603	1037;1038;1039;1040;1041	1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493	1488	120	13	9606
EVDEQMLNVQNK	Unmodified	1445.682	0.68204326	395;131;460	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	3.5	0.5			1	1		16.923	16.923	2	4.4501E-160	10989	DP1145_8	232.83	167.56			400800000	644	131;395;460	603	1042;1043	1494;1495;1496	1494		3	9606
EVELILVK	Unmodified	941.57973	0.57973367	416	Q01959	SLC6A3	Sodium-dependent dopamine transporter	yes	yes	0	0	0	1	0	1					20.327	20.327	1	0.0026619	14612	DP1145_6	108.24	9.2414			21154000	645	416	604	1044	1497	1497		1	9606
EVFFMNTQSIVQLVQR	Oxidation (M)	1953.9982	0.99823245	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					21.453	21.453	2;3	1.1983E-169	16104	DP1145_6	233.28	208.12			402610000	646	438	605	1045;1046	1498;1499;1500;1501;1502;1503	1503	389	6	9606
EVFFMNTQSIVQLVQR	Unmodified	1938.0033	0.003317824	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					22.647	22.647	2;3	0	17904	DP1145_6	279.3	214.48			16508000	647	438	605	1047;1048	1504;1505;1506	1504		3	9606
EVFGTFGIPFLLR	Unmodified	1494.8235	0.82348619	616	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	3	0.816		1	1	1		23.874	23.874	2	0.00073834	22056	DP1145_7	114.4	87.512			14372000	648	616	606	1049;1050;1051	1507;1508;1509;1510	1507		4	9606
EVGVYEALK	Unmodified	1006.5335	0.53351176	262	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	1	0	1					17.153	17.153	2	0.041487	9521	DP1145_6	75.738	16.956			11674000	649	262	607	1052	1511	1511		1	9606
EVIELPLTNPELFQR	Unmodified	1796.9672	0.96724989	365	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	4	0				1		21.773	21.773	2	2.192E-88	17423	DP1145_9	202.03	158.53			20361000	650	365	608	1053	1512;1513;1514	1513		3	9606
EVLCPESQSPNGVR	Unmodified	1570.741	0.74095513	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.41	1	1	1	1	1	15.784	15.784	2	7.0097E-273	7404	DP1145_6	270.54	217.82			5143200000	651	474	609	1054;1055;1056;1057;1058	1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525;1526;1527;1528	1517		14	9606
EVLDLFEKMMEDMNLNEEKK	3 Oxidation (M)	2532.1434	0.14337764	69	O60879	DIAPH2	Protein diaphanous homolog 2	yes	yes	0	3	2	2	0		1				22.416	22.416	3	0.032358	19807	DP1145_7	41.912	16.959			30218000	652	69	610	1059	1529	1529	54;55;56	1	9606
EVMLVGIGDK	Oxidation (M)	1075.5583	0.5583463	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	1	0	4	0				1		17.422	17.422	2	0.0015328	10834	DP1145_9	118.71	26.241			95777000	653	249	611	1060	1530;1531	1530	229	2	9606
EVMLVGIGDK	Unmodified	1059.5634	0.56343168	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		18.443	18.443	2	0.007837	12241	DP1145_9	112.11	64.192			37838000	654	249	611	1061	1532	1532		1	9606
EVPAVPETLK	Unmodified	1081.6019	0.60192568	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		16.935	16.935	2	0.011782	10105	DP1145_9	117.81	55.347			0	655	191	612	1062	1533	1533		1	9606
EVPAVPETLKK	Unmodified	1209.6969	0.69688869	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		15.413	15.413	3	0.016029	7713	DP1145_9	91.701	69.921			173980000	656	191	613	1063	1534	1534		1	9606
EVQLAQIFEPLSR	Unmodified	1528.8249	0.82494275	510	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	2	0		1				21.76	21.76	2	1.3298E-05	18880	DP1145_7	124.42	83.695			17285000	657	510	614	1064	1535	1535		1	9606
EVSFQSTGESEWK	Unmodified	1512.6733	0.67325272	425	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	5	0					1	17.844	17.844	2	0.036706	11333	DP1145_10	87.184	64.846			0	658	425	615	1065	1536	1536		1	9606
EVVCTTQNTPTVK	Unmodified	1475.729	0.72899346	318	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	2	0		1				14.928	14.928	2	2.2606E-11	8498	DP1145_7	139.31	75.613			18681000	659	318	616	1066	1537	1537		1	9606
EVVEQGLLK	Unmodified	1013.5757	0.57571092	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				16.743	16.743	2	0.0074561	11447	DP1145_7	94.662	29.905			124330000	660	655	617	1067	1538	1538		1	9606
EWLIEVPGNADPLEDQFAK	Unmodified	2170.0582	0.058249746	486	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		22.412	22.412	2	0.0031088	18198	DP1145_9	110.15	81.867			18801000	661	486	618	1068	1539;1540	1539		2	9606
EYEATLEECCAK	Unmodified	1501.6065	0.60649506	10	CON__P02769			yes	yes	0	0	0	3.5	0.5			1	1		16.116	16.116	2	9.8533E-17	9679	DP1145_8	152.97	142.87		+	129110000	662	10	619	1069;1070	1541;1542;1543	1541		3	
EYFSWEGAFQHVGK	Unmodified	1683.7682	0.76815616	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			19.921	19.921	2	1.6331E-09	15574	DP1145_8	140.78	114.89			0	663	218	620	1071	1544	1544		1	9606
EYQDLLNVK	Unmodified	1120.5764	0.57643921	137	P08670;P17661;Q16352;P07196;P07197;P12036	VIM;DES;INA;NEFL;NEFM;NEFH	Vimentin;Desmin;Alpha-internexin;Neurofilament light polypeptide;Neurofilament medium polypeptide;Neurofilament heavy polypeptide	yes	no	0	0	0	3	0			1			18.223	18.223	2	5.8315E-08	13003	DP1145_8	125.25	81.444			209730000	664	137	621	1072	1545	1545		0	9606
EYQELMNVK	Oxidation (M)	1168.5434	0.54342452	108;12	P04259;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__H-INV:HIT000292931;CON__P05787;P05787	KRT6B;KRT6C;KRT6A;KRT8	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8	no	no	0	1	0	3	0			1			15.555	15.555	2	0.0021499	8828	DP1145_8	110.41	43.238		+	60788000	665	108;12	622	1073	1546	1546	10	1	9606
FAAHLIAGAPSEGSGALKPELSR	Unmodified	2278.207	0.20697967	599	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	1	2	0		2				17.4	17.4	3;4	0.0059966	12565	DP1145_7	57.142	49.609			173280000	666	599	623	1074;1075	1547;1548	1547		2	9606
FAAQNLHQNLIR	Unmodified	1423.7684	0.76843093	682	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	3.5	0.5			1	1		16.393	16.393	3	0.017303	10061	DP1145_8	81.017	41.392			61880000	667	682	624	1076;1077	1549;1550	1549		1	9606
FACHSASLTVR	Unmodified	1247.6081	0.60809046	490	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	3	0			1			14.793	14.793	3	2.5939E-63	7611	DP1145_8	187.16	149.98			0	668	490	625	1078	1551	1551		1	9606
FAEAFEAIPR	Unmodified	1149.5819	0.58185893	301	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	3	0			1			18.823	18.823	2	1.3175E-13	14000	DP1145_8	129.42	84.441			39354000	669	301	626	1079	1552	1552		0	9606
FAEALGSTEAK	Unmodified	1122.5557	0.55570376	399	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				15.64	15.64	2	0.025446	9601	DP1145_7	67.113	40.324			14981000	670	399	627	1080	1553	1553		0	9606
FAEFLLPLLIEK	Unmodified	1431.8377	0.83773927	643	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	2	0		1				23.933	23.933	2	0.0021696	22146	DP1145_7	105.4	86.418			10159000	671	643	628	1081	1554;1555	1554		2	9606
FANPFPAAVR	Unmodified	1088.5767	0.57671398	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	18.637	18.637	2	0.00022704	13529	DP1145_8	129.68	90.876			1604499999.9999998	672	116	629	1082;1083;1084;1085	1556;1557;1558;1559;1560;1561	1559		6	9606
FAPEMDDYVGTFLEGCQDDPER	Oxidation (M)	2606.0577	0.057733753	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				21.062	21.062	2	0.0082543	18030	DP1145_7	70.134	58.872			13561000	673	655	630	1086	1562	1562	563	1	9606
FASFIDK	Unmodified	826.4225	0.42250475	18;108;12	P35908;CON__P35908;CON__P35908v2;CON__Q9R0H5;Q7Z794;CON__Q3TTY5;CON__Q6NXH9;CON__Q6IFZ6;CON__Q7Z794;CON__Q32MB2;CON__Q6ISB0;CON__P19013;CON__P08729;CON__Q9NSB2;CON__P12035;CON__Q01546;CON__Q6IME9;CON__Q9DCV7;CON__Q7RTS7;CON__Q3SY84;CON__Q3KNV1;CON__Q9H552;CON__P07744;CON__Q14CN4-1;Q14CN4;Q01546;Q7RTS7;P12035;Q9NSB2;P19013;Q3SY84;P08729;Q86Y46;P04259;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__P13647;P13647;CON__Q8VED5;CON__Q5XKE5;CON__O95678;Q5XKE5;O95678;CON__P05787;P05787	KRT2;KRT77;KRT72;KRT76;KRT74;KRT3;KRT84;KRT4;KRT71;KRT7;KRT73;KRT6B;KRT6C;KRT6A;KRT5;KRT79;KRT75;KRT8	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 3;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 8	no	no	0	0	0	3	0			1			17.323	17.323	2	0.030746	11580	DP1145_8	98.418	49.657		+	243230000	674	18;108;12	631	1087	1563	1563		1	9606
FDGALNVDLTEFQTNLVPYPR	Unmodified	2408.2012	0.20122559	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	0	3.25	1.48	1		1	1	1	22.895	22.895	2	3.4242E-82	19018	DP1145_9	192.65	142.43			48801000	675	393;550;394	632	1088;1089;1090;1091	1564;1565;1566;1567;1568;1569	1568		6	9606
FDLLEELVAK	Unmodified	1175.6438	0.64379049	603	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	5	0					1	22.378	22.378	2	1.8523E-05	17981	DP1145_10	111.74	56.369			3874600	676	603	633	1092	1570	1570		0	9606
FDLMYAK	Oxidation (M)	902.42079	0.42079019	393;550;394	P68363;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBAL3;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	1	0	2.67	1.25	1		1	1		17.297	17.297	2	0.00047093	10763	DP1145_9	114.59	65.825			453420000	677	393;550;394	634	1093;1094;1095	1571;1572;1573;1574	1574	337	4	9606
FDLMYAK	Unmodified	886.42588	0.42587556	393;550;394	P68363;A6NHL2;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBAL3;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	0	3	0			1			18.423	18.423	2	0.00089645	13371	DP1145_8	113.08	52.284			191970000	678	393;550;394	634	1096	1575	1575		1	9606
FDQLFDDESDPFEVLK	Unmodified	1942.8836	0.88363942	588	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	3	0			1			22.788	22.788	2	0.0051685	19726	DP1145_8	108.68	59.219			12674000	679	588	635	1097	1576	1576		1	9606
FDSKPAPSAQPAPPPHPPSR	Unmodified	2080.049	0.049022463	640	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	1	2	0		1				14.431	14.431	4	0.032496	7821	DP1145_7	64.2	28.871			26799000	680	640	636	1098	1577	1577		0	9606
FDTPFLPK	Unmodified	963.50657	0.50656873	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.89	1.2	1	3	2	2	1	19.365	19.365	1;2	4.2315E-26	15228	DP1145_7	166.05	37.669			943580000	681	474	637	1099;1100;1101;1102;1103;1104;1105;1106;1107	1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593	1584		13	9606
FDTPFLPKPLFFR	Unmodified	1623.8813	0.88133542	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.57	1.4	2	2	1	1	1	21.671	21.671	2;3	1.3210000000000001E-159	18806	DP1145_7	236.56	188.47			519400000	682	474	638	1108;1109;1110;1111;1112;1113;1114	1594;1595;1596;1597;1598;1599;1600;1601	1599		7	9606
FDVQLKDLEK	Unmodified	1233.6605	0.66050319	356	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	5	0					1	17.898	17.898	2	6.5735E-42	11377	DP1145_10	163.64	20.605			27009000	683	356	639	1115	1602	1602		0	9606
FEDENFILK	Unmodified	1153.5655	0.56554017	384	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	1	0	1					19.055	19.055	2	0.035139	12643	DP1145_6	78.516	18.497			47172000	684	384	640	1116	1603	1603		1	9606
FEEEGNPYYSSAR	Unmodified	1547.6529	0.65285163	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.64	16.64	2	9.6346E-85	10681	DP1145_8	199.68	130.08			310370000	685	700	641	1117	1604	1604		1	9606
FEELNADLFR	Unmodified	1252.6088	0.60880197	154	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3	0			1			20.124	20.124	2	5.9338E-36	15761	DP1145_8	178.94	108.42			53940000	686	154	642	1118	1605;1606	1605		2	9606
FELQHGTEEQQEEVR	Unmodified	1857.8493	0.8493196	89	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	2	0		1				15.556	15.556	3	0.0028934	9510	DP1145_7	101.61	31.273			22041000	687	89	643	1119	1607	1607		1	9606
FELTGIPPAPR	Unmodified	1196.6554	0.65535823	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	4	0				1		18.723	18.723	2	0.019553	12827	DP1145_9	80.165	29.559			42506000	688	154	644	1120	1608	1608		1	9606
FEPYANPTKR	Unmodified	1221.6142	0.6142217	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	3	0			1			14.731	14.731	3	0.021366	7421	DP1145_8	92.239	66.196			19938000	689	307	645	1121	1609	1609		1	9606
FESPEVAER	Unmodified	1062.4982	0.49818889	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			15.555	15.555	2	0.0033272	8869	DP1145_8	109.48	55.273			61466000	690	307	646	1122	1610	1610		1	9606
FFEVILIDPFHK	Unmodified	1503.8126	0.81258715	344	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	2.33	1.89	2				1	22.262	22.262	2;3	0.0016435	17836	DP1145_10	99.539	81.436			27326000	691	344	647	1123;1124;1125	1611;1612;1613;1614	1611		4	9606
FFVAPFPEVFGK	Unmodified	1383.7227	0.72270951	7	CON__P02662			yes	yes	0	0	0	2.5	1.12	1	1	1	1		22.408	22.408	2	0.001369	18258	DP1145_9	122.94	122.94		+	183100000	692	7	648	1126;1127;1128;1129	1615;1616;1617;1618;1619;1620	1619		6	
FGAYIVDGLR	Unmodified	1109.5869	0.58694431	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	2	1	1		1			19.34	19.34	2	1.8827E-11	12994	DP1145_6	148.99	122.02			1033499999.9999999	693	41;438	649	1130;1131	1621;1622	1621		2	9606
FGDPVVQSDMK	Unmodified	1221.57	0.56997362	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			16.823	16.823	2	0.0024458	10898	DP1145_8	102.06	70.758			288460000	694	148	650	1132	1623	1623		1	9606
FGEVVDCTLK	Unmodified	1166.5642	0.56415996	463	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		17.223	17.223	2	0.007837	10902	DP1145_9	112.11	0			59211000	695	463	651	1133	1624	1624		1	9606
FGFPEGSVELYAEK	Unmodified	1571.7508	0.75077476	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		20.124	20.124	2	0.0048321	15125	DP1145_9	101.71	80.74			231980000	696	205	652	1134	1625	1625		1	9606
FGIEIIK	Unmodified	818.49019	0.49019038	574	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	2	0		1				18.697	18.697	2	0.00076226	14615	DP1145_7	114.72	11.437			18479000	697	574	653	1135	1626	1626		1	9606
FGLALAVAGGVVNSALYNVDAGHR	Unmodified	2370.2444	0.24442781	238	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		22.365	22.365	3	0.03698	18295	DP1145_9	41.482	25.898			3546100	698	238	654	1136	1627	1627		1	9606
FGTGGAAVPEK	Unmodified	1032.524	0.52400971	467	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				14.844	14.844	2	2.7066E-05	8514	DP1145_7	132.88	80.239			86853000	699	467	655	1137	1628;1629	1629		2	9606
FGYVDFESAEDLEK	Unmodified	1647.7304	0.73043325	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		1				20.465	20.465	2	0.015008	17146	DP1145_7	81.676	58.072			241980000	700	194	656	1138	1630	1630		1	9606
FHDFLGDSWGILFSHPR	Unmodified	2029.9799	0.97988027	227	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	5	0					1	21.868	21.868	3	0.0048085	17250	DP1145_10	81.594	61.879			9563600	701	227	657	1139	1631;1632	1631		2	9606
FHFIDIYLDELSK	Unmodified	1638.8294	0.82935943	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.88	1.36	2	1	2	2	1	22.011	22.011	2;3	6.3568E-86	18517	DP1145_8	231.07	171.81			430380000	702	474	658	1140;1141;1142;1143;1144;1145;1146;1147	1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643;1644;1645;1646	1637		14	9606
FIDPFCK	Unmodified	925.43677	0.4367746	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			19.06	19.06	2	0.034132	15829	DP1145_7	95.793	34.468			6685099999.999999	703	474	659	1148;1149	1647;1648	1647		1	9606
FIDVGGYK	Unmodified	897.45962	0.45961853	638	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				17.213	17.213	2	0.010576	12130	DP1145_7	98.418	29.242			39964000	704	638	660	1150	1649	1649		1	9606
FIEIAAR	Unmodified	818.46504	0.46503826	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1.67	0.471	1	2				16.746	16.746	1;2	1.3084E-23	11437	DP1145_7	170.17	82.585			451270000	705	412	661	1151;1152;1153	1650;1651;1652	1651		3	9606
FIGPSPEVVR	Unmodified	1099.6026	0.60259438	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.75	1.48	1	1	1		1	17.161	17.161	2	4.3673E-07	12055	DP1145_7	140.35	88.826			2068899999.9999998	706	158	662	1154;1155;1156;1157	1653;1654;1655;1656;1657;1658	1655		6	9606
FIGPSPEVVRK	Unmodified	1227.6976	0.69755739	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.33	1.25	1	1		1		15.616	15.616	3	1.0016E-07	9609	DP1145_7	139.15	95.856			83849000	707	158	663	1158;1159;1160	1659;1660;1661	1660		3	9606
FIIGSVSEDNSEDEISNLVK	Unmodified	2194.0641	0.064122984	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				21.08	21.08	2	0	17862	DP1145_7	358.82	292.49			183660000	708	438	664	1161;1162	1662;1663;1664;1665	1665		3	9606
FIIPNVVK	Unmodified	928.57459	0.57458871	104	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		18.923	18.923	2	0.031338	13235	DP1145_9	95.793	20.482			20037000	709	104	665	1163	1666	1666		0	9606
FIPDDITFDDEPK	Unmodified	1550.7141	0.7140549	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				19.646	19.646	2	0.043322	16100	DP1145_7	69.65	27.312			13176000	710	688	666	1164	1667	1667		1	9606
FIPDIYIYTDHMK	Oxidation (M)	1670.8014	0.80143012	766	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	1	0	4	0				1		19.123	19.123	3	0.026099	13561	DP1145_9	63.602	43.764			23203000	711	766	667	1165	1668	1668	631	0	9606
FIVCLNK	Unmodified	892.48406	0.48405915	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.654	17.654	2	0.027773	10326	DP1145_6	100.27	42.82			11892000	712	401	668	1166	1669	1669		1	9606
FKEANNFLWPFK	Unmodified	1539.7874	0.78743503	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		20.517	20.517	2	0.036881	15687	DP1145_9	125.74	92.648			31914000	713	191	669	1167	1670	1670		1	9606
FKLNYAVDKR	Unmodified	1252.6928	0.69280637	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	2	4	0				1		15.214	15.214	3	0.0088545	7648	DP1145_9	85.355	49.69			6405300	714	688	670	1168	1671	1671		0	9606
FKMDVHITPGTHASEHAVNK	Oxidation (M)	2234.0902	0.090235351	776	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	1	1	5	0					1	13.974	13.974	5	0.016967	5436	DP1145_10	61.957	28.874			3518600	715	776	671	1169	1672	1672	635	0	9606
FLDGIYVSEK	Unmodified	1169.5968	0.5968403	234	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	5	0					1	18.934	18.934	2	0.0060548	13181	DP1145_10	109.29	63.318			144310000	716	234	672	1170	1673	1673		1	9606
FLEQQNQVLQTK	Unmodified	1474.778	0.77799256	11;18	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253;P35908;CON__P35908;CON__P35908v2;CON__Q9R0H5;Q7Z794;CON__Q6NXH9;CON__Q6IFZ6;CON__Q7Z794	KRT1;KRT2;KRT77	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b	no	no	0	0	0	2.5	1.12	1	1	1	1		16.874	16.874	2	3.939600000000001E-161	11591	DP1145_7	240.37	154.56		+	1124000000	717	11;18	673	1171;1172;1173;1174	1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684	1678		11	9606
FLFSLFGQK	Unmodified	1085.591	0.59096706	441	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	4	0				1		21.997	21.997	2	0.0078112	17761	DP1145_9	120.46	73.375			41980000	718	441	674	1175	1685	1685		1	9606
FLGPEDSHVVVASNSPCLK	Unmodified	2055.0095	0.0095254139	432	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					17.654	17.654	3	0.03832	10395	DP1145_6	54.253	31.427			33075000	719	432	675	1176	1686	1686		1	9606
FLHKHDLDLICR	Unmodified	1565.8137	0.81366656	251	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	no	0	0	1	4	0				1		16.523	16.523	3	0.0091739	9475	DP1145_9	142.19	117.68			426710000	720	251	676	1177	1687	1687		1	9606
FLILPDMLK	Unmodified	1088.6304	0.63038903	364	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	5	0					1	21.666	21.666	2	0.010427	17053	DP1145_10	93.374	41.587			17206000	721	364	677	1178	1688	1688		1	9606
FLLLFTFLK	Unmodified	1140.6947	0.69470385	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			24.287	24.287	2	0.0038215	21832	DP1145_8	111.74	111.74			6437400	722	719	678	1179	1689;1690	1689		2	9606
FLPAVSDENSKR	Unmodified	1361.6939	0.69392858	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	1	2	0		1				15.092	15.092	3	0.016731	8798	DP1145_7	111.5	87.982			25044000	723	277	679	1180	1691	1691		1	9606
FLQGDSFLNEDLNQLIK	Unmodified	1993.0157	0.015656649	599	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	1.5	0.5	1	1				22.416	22.416	2	9.385400000000001E-75	19983	DP1145_7	193.49	134.98			22829000	724	599	680	1181;1182	1692;1693	1693		2	9606
FLQSSSEVESPAVPSSSR	Unmodified	1892.9116	0.91158551	553	Q7L590	MCM10	Protein MCM10 homolog	yes	yes	0	0	0	2	0		1				16.965	16.965	2	0.00035672	11703	DP1145_7	116.51	71.664			0	725	553	681	1183	1694	1694		1	9606
FLSDVYPDGFK	Unmodified	1286.6183	0.61830402	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			19.484	19.484	2	3.5298E-153	14982	DP1145_8	239.6	167.72			860540000	726	115	682	1184;1185;1186	1695;1696;1697;1698;1699;1700;1701;1702	1700		8	9606
FLSPPALQGYVAWLR	Unmodified	1716.9352	0.9351619	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				22.955	22.955	2	8.91E-07	20698	DP1145_7	130.94	101.41			12696000	727	655	683	1187	1703;1704;1705	1704		3	9606
FLSQPFQVAEVFTGHMGK	Oxidation (M)	2037.9982	0.99823245	123	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3	0			1			20.425	20.425	3	0.035169	16256	DP1145_8	54.253	36.053			62510000	728	123	684	1188	1706	1706	105	1	9606
FLYECPWR	Unmodified	1169.5328	0.53280025	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				19.411	19.411	2	0.0032671	15582	DP1145_7	121.29	87.496			701100000	729	158	685	1189;1190	1707;1708;1709;1710	1710		4	9606
FLYIWPNAR	Unmodified	1178.6237	0.62366417	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	1.29	1	1	2	1	1	20.88	20.88	2	1.8495E-10	14944	DP1145_6	149.4	99.273			3843899999.9999995	730	700	686	1191;1192;1193;1194;1195;1196	1711;1712;1713;1714;1715;1716;1717;1718	1712		8	9606
FMDASALTGIPLPLIK	Oxidation (M)	1701.9375	0.93752967	211	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	1	0	4	0				1		22.067	22.067	2	0.017555	17782	DP1145_9	108.56	90.033			6631100	731	211	687	1197	1719	1719	209	0	9606
FMNAVFFLLPK	Oxidation (M)	1341.7155	0.71551564	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22.097	22.097	2	1.4455E-08	17012	DP1145_6	143.28	97.156			19881000	732	401	688	1198	1720;1721	1720	347	2	9606
FNADEFEDMVAEK	Oxidation (M)	1559.645	0.64498906	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	0	5	0					1	18.648	18.648	2	2.2508000000000002E-24	12588	DP1145_10	160.72	124.19			74757000	733	220	689	1199	1722;1723;1724	1723	215	3	9606
FNADEFEDMVAEKR	Oxidation (M)	1715.7461	0.74610008	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	1	1	5	0					1	17.843	17.843	3	0.00046976	11370	DP1145_10	122.52	73.187			45222000	734	220	690	1200	1725	1725	215	1	9606
FNASQLITQR	Unmodified	1176.6251	0.62512073	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		18.023	18.023	2	0.0031853	12015	DP1145_9	105.4	35.973			54405000	735	646	691	1201	1726	1726		1	9606
FNDYFEFPR	Unmodified	1233.5455	0.54547343	615	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	1	0	1					20.203	20.203	2	0.023868	14305	DP1145_6	88.819	53.277			4179300	736	615	692	1202	1727	1727		0	9606
FNEQIEPIYALLR	Unmodified	1604.8562	0.85624288	224	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	3	0			1			22.014	22.014	2	0.0094955	18548	DP1145_8	105.4	33.057			0	737	224	693	1203	1728	1728		1	9606
FNIWPGYR	Unmodified	1051.524	0.52395013	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	2	0		1				19.874	19.874	2	0.0028308	16135	DP1145_7	122.79	65.231			108810000	738	656	694	1204	1729	1729		1	9606
FNPFVTSDR	Unmodified	1081.5193	0.51925868	342	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	18.248	18.248	2	2.3975E-34	11848	DP1145_10	174.52	82.049			228650000	739	342	695	1205	1730;1731	1730		2	9606
FNVLQYVVPEVK	Unmodified	1433.7919	0.79185171	465	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				21.846	21.846	2	0.018511	19047	DP1145_7	96.171	60.507			20211000	740	465	696	1206	1732	1732		1	9606
FNYGFEYLGVQDK	Unmodified	1578.7355	0.73545904	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					20.355	20.355	2	0.014724	14604	DP1145_6	84.605	27.073			17573000	741	466	697	1207	1733	1733		1	9606
FPGDSVVTGR	Unmodified	1033.5193	0.51925868	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			16.814	16.814	2	1.5642E-35	10828	DP1145_8	175.91	129.93			260230000	742	116	698	1208;1209	1734;1735;1736	1735		3	9606
FPGQLNADLR	Unmodified	1129.588	0.58800695	395;131;460;455;664	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB3;TUBB1;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	0	2.67	1.25	1		1	1		17.733	17.733	2	2.1643E-07	12196	DP1145_8	143.37	82.692			4318900000	743	131;395;460;455;664	699	1210;1211;1212	1737;1738;1739;1740;1741;1742;1743;1744;1745	1740		9	9606
FPGQLNADLRK	Unmodified	1257.683	0.68296996	395;131;460;455;664	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB3;TUBB1;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	1	3	0			2			16.162	16.162	2;3	6.6173E-12	9734	DP1145_8	154.01	89.358			1463899999.9999998	744	131;395;460;455;664	700	1213;1214	1746;1747;1748;1749	1748		4	9606
FPPVVFYTPK	Unmodified	1193.6485	0.64848194	542	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					19.755	19.755	2	0.038298	13594	DP1145_6	74.464	43.778			13246000	745	542	701	1215	1750	1750		1	9606
FPSLLTHNENMVAK	Oxidation (M)	1615.8028	0.8028271	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	1	0	5	0					2	16.969	16.969	2;3	1.4796E-11	9875	DP1145_10	140.63	90.434			389820000	746	380	702	1216;1217	1751;1752;1753;1754;1755;1756	1753	324	6	9606
FPSLLTHNENMVAK	Unmodified	1599.8079	0.80791248	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	17.748	17.748	3	2.073E-25	11249	DP1145_10	159.66	109.72			104900000	747	380	702	1218	1757;1758;1759	1758		3	9606
FQAQSLGTTYIYDIPEMFR	Oxidation (M)	2295.0882	0.088169665	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					21.791	21.791	2;3	2.5559000000000002E-78	16579	DP1145_6	196.37	178.8			133840000	748	438	703	1219;1220	1760;1761;1762	1760	390	3	9606
FQAQSLGTTYIYDIPEMFR	Unmodified	2279.0933	0.093255043	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					23.023	23.023	2	6.9481E-175	18421	DP1145_6	234.82	188.44			5356700	749	438	703	1221	1763;1764	1763		2	9606
FQDTAEALAAFTALMEGK	Oxidation (M)	1928.919	0.91897907	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	1	0	3	0			1			22.117	22.117	2	5.8103E-111	18647	DP1145_8	208.79	150.01			13280000	750	768	704	1222	1765	1765	633	1	9606
FQDTAEALAAFTALMEGK	Unmodified	1912.9241	0.92406445	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			24.159	24.159	2	5.6126E-152	21667	DP1145_8	230.57	175.79			12762000	751	768	704	1223	1766;1767	1766		2	9606
FQELLASPAYR	Unmodified	1293.6717	0.67173657	716	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	4.5	0.5				1	1	18.423	18.423	2	0.005366	12278	DP1145_10	123.75	23.934			31195000	752	716	705	1224;1225	1768;1769	1768		2	9606
FREDHPDLIQNAK	Unmodified	1581.79	0.78995423	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	1	2	0		1				15.028	15.028	3	2.2324E-08	8753	DP1145_7	174.21	91.359			330630000	753	184	706	1226	1770	1770		1	9606
FSASGELGNGNIK	Unmodified	1292.6361	0.63607935	161	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	4	0				1		16.449	16.449	2	0.0022563	9359	DP1145_9	106.4	65.406			61361000	754	161	707	1227	1771	1771		1	9606
FSDQFPLPLK	Unmodified	1190.6336	0.63356015	614	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	2	0		1				19.964	19.964	2	0.010166	16271	DP1145_7	88.177	45.839			8451200	755	614	708	1228	1772	1772		0	9606
FSPLTTNLINLLAENGR	Unmodified	1872.0105	0.010511692	286	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	5	0					1	23.148	23.148	2	0.00025739	19095	DP1145_10	122.66	83.081			3315800	756	286	709	1229	1773	1773		1	9606
FSVCVLGDQQHCDEAK	Unmodified	1891.8193	0.8192818	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	5	0					1	17.069	17.069	3	0.036534	10251	DP1145_10	64.374	49.083			361670000	757	380	710	1230	1774	1774		0	9606
FTISDHPQPIDPLLK	Unmodified	1719.9196	0.91957142	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				18.924	18.924	2	0.0045539	14735	DP1145_7	113.61	62.333			14788000	758	566	711	1231	1775	1775		0	9606
FTPDIPTMLYHGTQEER	Unmodified	2033.9517	0.95167618	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				19.267	19.267	3	0.0096324	15351	DP1145_7	75.445	51.606			40524000	759	714	712	1232	1776	1776		1	9606
FTQDTQPHYIYSPR	Unmodified	1751.8267	0.82673367	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.4	16.4	3	0.0097211	8195	DP1145_6	90.689	72.593			35821000	760	466	713	1233	1777	1777		0	9606
FTQTSGETTDADKEPAGEDK	Unmodified	2125.9288	0.92875171	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	1	1		1			13.938	13.938	3	2.3604E-28	6438	DP1145_8	162.77	126.72			41114000	761	276	714	1234;1235	1778;1779	1779		2	9606
FVDGLMIHSGDPVNYYVDTAVR	Oxidation (M)	2483.1791	0.17910994	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		19.924	19.924	3	4.2713E-32	14755	DP1145_9	162.92	133.1			97153000	762	205	715	1236	1780;1781	1780	203	2	9606
FVFFNIPQIQYK	Unmodified	1542.8235	0.82348619	402	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	5	0					1	22.29	22.29	2	1.5133E-06	17860	DP1145_10	120.87	82.064			4812700	763	402	716	1237	1782	1782		0	9606
FVHFIDAPSLALIMPIVQR	Oxidation (M)	2182.1973	0.1972666	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	1	0	1					21.681	21.681	3	0.02748	16539	DP1145_6	56.851	37.913			7266800	764	608	717	1238	1783	1783	525	1	9606
FVINYDYPNSSEDYIHR	Unmodified	2130.9647	0.96468371	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3.33	0.471			2	1		18.924	18.924	2;3	1.3935E-11	14220	DP1145_8	142.38	97.841			431820000	765	186	718	1239;1240;1241	1784;1785;1786;1787	1784		4	9606
FVINYDYPNSSEDYVHR	Unmodified	2116.949	0.94903365	612	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			18.623	18.623	3	0.025549	13554	DP1145_8	76.574	59.506			40203000	766	612	719	1242	1788	1788		0	9606
FVMEVEVDGQK	Oxidation (M)	1295.6068	0.60675306	641;436	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	1	0	3	0.816		1	1	1		16.147	16.147	2	2.0749E-05	10422	DP1145_7	131.62	92.312			94555000	767	436;641	720	1243;1244;1245	1789;1790;1791;1792	1789	381	4	9606
FVNLGIEPPK	Unmodified	1112.623	0.62299547	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3	0			1			18.523	18.523	2	0.0042222	13586	DP1145_8	98.033	56.585			17826000	768	248	721	1246	1793	1793		1	9606
FVNWQVDGEYR	Unmodified	1411.6521	0.65206377	103	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	4	0				1		18.823	18.823	2	6.521E-06	13016	DP1145_9	136.57	54.15			34213000	769	103	722	1247	1794;1795	1794		2	9606
FVQCPDGELQK	Unmodified	1319.618	0.61798644	763	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	3	0			1			15.735	15.735	2	0.0057163	9053	DP1145_8	96.034	51.684			16538000	770	763	723	1248	1796	1796		1	9606
FVVMVTPEDLK	Oxidation (M)	1292.6686	0.66862503	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	0	1	0	1					18.855	18.855	2	3.009E-08	12250	DP1145_6	139.98	77.397			578620000	771	41;438	724	1249	1797;1798;1799;1800	1797	32	4	9606
FVVMVTPEDLK	Unmodified	1276.6737	0.67371041	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					19.755	19.755	2	4.9482000000000004E-64	13621	DP1145_6	193.1	133.08			407750000	772	41;438	724	1250	1801;1802	1801		2	9606
FWEVISDEHGIDPTGTYHGDSDLQLDR	Unmodified	3101.4003	0.40027234	131	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3	0			2			19.924	19.924	3;4	1.4466E-42	15628	DP1145_8	160.15	72.345			1105000000	773	131	725	1251;1252	1803;1804;1805	1805		3	9606
FWEVISDEHGIDPTGTYHGDSDLQLER	Unmodified	3115.4159	0.4159224	395	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	0	3	0			2			19.917	19.917	3;4	9.2541E-20	15491	DP1145_8	136.44	111.98			281380000	774	395	726	1253;1254	1806;1807;1808;1809;1810	1806		5	9606
FWYFVSQLK	Unmodified	1216.6281	0.62808085	418	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	21.298	21.298	2	0.015188	16508	DP1145_10	91.318	42.258			13165000	775	418	727	1255	1811;1812	1811		2	9606
FYEEVHDLER	Unmodified	1335.6095	0.60953025	648;325	P55209;Q99733	NAP1L1;NAP1L4	Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4	no	no	0	0	0	3	0			1			16.64	16.64	2	2.0358E-60	10483	DP1145_8	193.1	174.79			118530000	776	325;648	728	1256	1813	1813		1	9606
FYLENLEQMVK	Oxidation (M)	1428.6959	0.69590241	599	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	1	0	2	0		1				19.663	19.663	2	0.016941	15815	DP1145_7	75.387	43.629			46247000	777	599	729	1257	1814	1814	518	1	9606
FYPAEWQDFLDSLQK	Unmodified	1885.8887	0.88866522	775	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	0	0	5	0					1	23.51	23.51	2	0.0077289	19558	DP1145_10	115.14	85.593			0	778	775	730	1258	1815	1815		1	9606
FYVPPTQEDGVDPVEAFAQNVLSK	Unmodified	2649.2962	0.29624819	428	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	3	1		1		1		23.165	23.165	2;3	3.2136E-06	21106	DP1145_7	76.198	70.966			12944000	779	428	731	1259;1260	1816;1817;1818	1817		3	9606
GADSELSTVPSVTK	Unmodified	1389.6987	0.69873919	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.743	16.743	2	0.0023661	11453	DP1145_7	138.76	72.573			103040000	780	277	732	1261	1819	1819		1	9606
GAEAANVTGPDGVPVEGSR	Unmodified	1781.8544	0.85440498	179	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	4	0				2		16.476	16.476	2	1.0661E-133	9312	DP1145_9	217.2	181.7			0	781	179	733	1262;1263	1820;1821	1820		2	9606
GAEAANVTGPGGVPVQGSK	Unmodified	1694.8588	0.85876208	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	4	0				1		15.677	15.677	2	3.3647E-111	8160	DP1145_9	270.99	235.32			197090000	782	390	734	1264	1822;1823	1822		2	9606
GAFSPFGNIIDLSMDPPR	Oxidation (M)	1948.9353	0.93529784	192	P18615	NELFE	Negative elongation factor E	yes	yes	0	1	0	4	0				1		22.352	22.352	2	0.014546	18166	DP1145_9	99.844	62.419			0	783	192	735	1265	1824	1824	191	1	9606
GAGLGFSTAPNK	Unmodified	1118.572	0.57202253	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	3.5	0.5			1	1		16.18	16.18	2	0.0022121	9759	DP1145_8	103.7	67.792			218760000	784	508	736	1266;1267	1825;1826	1825		2	9606
GALEMVQMAVEAKFVQDTLK	2 Oxidation (M)	2239.1228	0.12284061	61	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	2	1	4	0				1		19.223	19.223	3	0.023666	13961	DP1145_9	63.894	31.387			315410000	785	61	737	1268	1827	1827	48;49	0	9606
GALQNIIPASTGAAK	Unmodified	1410.7831	0.78307794	109	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		18.023	18.023	2	0.041859	11911	DP1145_9	67.93	16.403			110870000	786	109	738	1269	1828	1828		1	9606
GALQYLVPILTQTLTK	Unmodified	1758.0291	0.029121869	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2.5	0.5		2	2			23.835	23.835	2;3	3.7494E-11	21986	DP1145_7	177.04	154.56			33084000	787	478	739	1270;1271;1272;1273	1829;1830;1831;1832;1833;1834	1830		6	9606
GANAVGYTNYPDNVVFK	Unmodified	1827.8792	0.87916317	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			18.86	18.86	2	3.1319E-26	14724	DP1145_7	174.23	145.65			846800000	788	158	740	1274;1275	1835;1836	1835		2	9606
GAPTLPPAWQPFLK	Acetyl (Protein N-term)	1563.8449	0.84494991	51	O15392	BIRC5	Baculoviral IAP repeat-containing protein 5	yes	yes	1	0	0	5	0					1	23.631	23.631	2	0.0084097	19732	DP1145_10	70.17	40.619			1677900	789	51	741	1276	1837;1838	1837		2	9606
GASQAGMTGYGMPR	Oxidation (M)	1398.602	0.6020188	253	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	1	0	5	0					1	15.304	15.304	2	0.02183	7428	DP1145_10	71.555	56.881			18249000	790	253	742	1277	1839	1839	232;233	1	9606
GASQAGMTGYGMPR	2 Oxidation (M)	1414.5969	0.59693343	253	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	2	0	5	0					1	13.988	13.988	2	0.04008	5487	DP1145_10	49.189	30.583			433600	791	253	742	1278	1840	1840	232;233	0	9606
GAVDALAAALAHISGASSFEPR	Unmodified	2110.0807	0.080716522	652	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	1.67	0.471	1	2				23.044	23.044	2;3	1.4139E-30	20877	DP1145_7	156.72	126.28			29596000	792	652	743	1279;1280;1281	1841;1842;1843;1844	1844		4	9606
GAVDGGLSIPHSTK	Unmodified	1337.6939	0.69392858	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	3.5	1.5	1			2	1	15.75	15.75	2;3	5.6807999999999996E-46	8280	DP1145_9	184.96	147.6			513270000	793	278	744	1282;1283;1284;1285	1845;1846;1847;1848;1849;1850;1851	1850		7	9606
GAVDGGLSIPHSTKR	Unmodified	1493.795	0.79503961	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	4	0				1		14.895	14.895	3	2.5114E-05	6837	DP1145_9	126.09	90.312			17507000	794	278	745	1286	1852	1852		0	9606
GAVEALAAALAHISGATSVDQR	Unmodified	2107.1022	0.10218025	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0.816	1	1	1			22.687	22.687	3	2.5454E-05	20295	DP1145_7	114.75	98.878			54341000	795	709	746	1287;1288;1289	1853;1854;1855;1856;1857;1858	1856		5	9606
GAVEIIFK	Unmodified	875.51165	0.5116541	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	5	0					1	18.548	18.548	2	1.4296E-06	12318	DP1145_10	124.59	9.1353			34850000	796	116	747	1290	1859	1859		0	9606
GAWSNVLR	Unmodified	901.477	0.47699993	114;162	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	3	2	1				1	17.806	17.806	2	0.0019771	11237	DP1145_10	114.59	59.821			210760000	797	114;162	748	1291;1292	1860;1861	1860		1	9606
GCDVVVIPAGVPR	Unmodified	1337.7126	0.71255553	263	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		18.414	18.414	2	0.020364	12516	DP1145_9	87.913	49.621			13834000	798	263	749	1293	1862	1862		0	9606
GCGTVLLSGPR	Unmodified	1115.5757	0.5757277	424	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	16.587	16.587	2	2.0486E-08	9393	DP1145_10	143.7	100.83			112330000	799	424	750	1294	1863	1863		1	9606
GCTATLGNFAK	Unmodified	1138.5441	0.54409322	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	2.5	1.5	1			1		16.452	16.452	2	1.6544E-05	9451	DP1145_9	134.77	95.513			282020000	800	173	751	1295;1296	1864;1865;1866	1865		2	9606
GDADQASNILASFGLSAR	Unmodified	1791.8751	0.87514042	273	P43243	MATR3	Matrin-3	yes	yes	0	0	0	3	1		1		1		22.354	22.354	2	0.0084153	18226	DP1145_9	89.466	61.184			17781000	801	273	752	1297;1298	1867;1868	1868		1	9606
GDDTPLHLAASHGHR	Unmodified	1582.7601	0.76005109	450	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	3	0			1			14.231	14.231	3	0.010675	6802	DP1145_8	81.128	39.033			5558900	802	450	753	1299	1869	1869		0	9606
GDLGIEIPAEK	Unmodified	1140.6027	0.60265396	171	P14618;P30613	PKM;PKLR	Pyruvate kinase PKM;Pyruvate kinase PKLR	yes	no	0	0	0	1	0	1					18.355	18.355	2	1.0943E-07	11420	DP1145_6	121.73	41.826			50918000	803	171	754	1300	1870	1870		0	9606
GDLLEGANAYHCEK	Unmodified	1575.6988	0.69875596	615	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	1	0	1					16.176	16.176	3	0.010881	7951	DP1145_6	97.69	73.936			14715000	804	615	755	1301	1871	1871		0	9606
GEAAAERPGEAAVASSPSK	Unmodified	1783.8701	0.87005504	226	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	1	3	0			1			13.855	13.855	3	0.0098774	6411	DP1145_8	93.684	66.656			10736000	805	226	756	1302	1872	1872		1	9606
GEGAGPPPPLPPAQPGAEGGGDR	Unmodified	2079.9974	0.99738082	718	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			1			16.611	16.611	2	0.001941	10461	DP1145_8	106.76	61.477			0	806	718	757	1303	1873	1873		1	9606
GEGAGQPSTSAQGQPAAPAPQKR	Unmodified	2190.0778	0.077756409	312	P52926	HMGA2	High mobility group protein HMGI-C	yes	yes	0	0	1	5	0					1	13.535	13.535	3	0.00081841	4834	DP1145_10	84.113	64.623			1297300	807	312	758	1304	1874	1874		1	9606
GEKGDTDIMSDLFGLHPKK	Oxidation (M)	2103.0307	0.030654786	496	Q15413	RYR3	Ryanodine receptor 3	yes	yes	0	1	2	5	0					1	23.885	23.885	2	0.031215	20112	DP1145_10	89.805	41.813			57262000	808	496	759	1305	1875	1875	460	1	9606
GEPETFLPLDYLEVKPTDEK	Unmodified	2319.1522	0.15220971	473	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	2	0		1				21.129	21.129	3	0.0069459	18044	DP1145_7	81.639	59.652			20941000	809	473	760	1306	1876	1876		1	9606
GEPGAAPLSAPAFSLVFPFLK	Unmodified	2115.1405	0.14046323	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1.5	0.5	1	1				24.479	24.479	2	4.8475E-06	22972	DP1145_7	122.12	104.01			7021400	810	608	761	1307;1308	1877;1878;1879;1880	1880		4	9606
GFAFITFMFPEHAVK	Oxidation (M)	1756.8647	0.86469908	782	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	1	0	2	0		1				21.035	21.035	3	0.040487	17952	DP1145_7	51.939	29.028			8681600	811	782	762	1309	1881	1881	644	1	9606
GFAFVQYVNER	Unmodified	1328.6513	0.65133548	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		19.728	19.728	2	0.0045545	14268	DP1145_9	111.46	70.573			52785000	812	133	763	1310	1882;1883;1884	1882		3	9606
GFAFVTFDDHDSVDK	Unmodified	1698.7526	0.75256567	143	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				3		19.423	19.423	2;3	4.8217E-28	13977	DP1145_9	161.94	94.218			101110000	813	143	764	1311;1312;1313	1885;1886;1887	1887		2	9606
GFDILGIKPVQR	Unmodified	1341.7769	0.77687035	319	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	3	0			1			19	19	3	0.021119	14121	DP1145_8	88.056	88.056			13725000	814	319	765	1314	1888	1888		1	9606
GFEVVYMTEPIDEYCVQQLK	Unmodified	2447.1389	0.13888461	136	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				21.684	21.684	2	0.0035818	18948	DP1145_7	101.38	36.085			9403900	815	136	766	1315	1889	1889		1	9606
GFGFVDFNSEEDAK	Unmodified	1560.6733	0.67325272	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	3.5	1.12		1	1	1	1	20.174	20.174	2	1.4769000000000001E-85	15070	DP1145_9	199.33	130.55			922300000	816	194	767	1316;1317;1318;1319	1890;1891;1892;1893	1893		4	9606
GFGFVTYATVEEVDAAMNAR	Oxidation (M)	2162.9943	0.99426928	143	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	0	4	0				1		21.579	21.579	3	0.024106	16948	DP1145_9	54.511	43.712			34932000	817	143	768	1320	1894	1894	137	1	9606
GFGFVTYATVEEVDAAMNAR	Unmodified	2146.9994	0.99935466	143	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	0	4	0				1		23.218	23.218	2	3.3718E-08	19422	DP1145_9	172.57	154.38			3364800	818	143	768	1321	1895	1895		1	9606
GFGFVTYATVEEVDAAMNARPHK	Oxidation (M)	2525.2009	0.20090801	143	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	1	1	4	0				2		19.723	19.723	3;4	5.5347E-07	14456	DP1145_9	124.25	99.701			181810000	819	143	769	1322;1323	1896;1897;1898	1897	137	3	9606
GFGFVTYATVEEVDAAMNARPHK	Unmodified	2509.206	0.20599339	143	P09651;A0A2R8Y4L2	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	no	0	0	1	4	0				1		21.11	21.11	4	0.00025074	16302	DP1145_9	104.16	86.728			20432000	820	143	769	1324	1899	1899		1	9606
GFPPSASLCLLDLVK	Unmodified	1615.8644	0.86436473	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.337	22.337	2	0.0076148	17441	DP1145_6	95.094	54.94			6014500	821	401	770	1325	1900	1900		1	9606
GFSGGMKDMYDQVLK	2 Oxidation (M)	1706.7644	0.76439269	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	2	1	1	0	2					16.229	16.229	2;3	0.00038208	8049	DP1145_6	124.38	84.592			405030000	822	41;438	771	1326;1327	1901;1902	1902	33;34	2	9606
GFSGGMKDMYDQVLK	Oxidation (M)	1690.7695	0.76947806	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	1	1	0	1					17.253	17.253	2	0.035881	9816	DP1145_6	101.89	46.536			16828000	823	41;438	771	1328	1903	1903	33;34	1	9606
GFSSGSAVVSGGSR	Unmodified	1253.6	0.60002819	18	P35908;CON__P35908;CON__P35908v2;CON__Q3TTY5	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2.5	1.12	1	1	1	1		15.255	15.255	2	1.1041E-07	8296	DP1145_8	128.01	92.746		+	162400000	824	18	772	1329;1330;1331;1332	1904;1905;1906;1907	1906		2	9606
GFVDDIIQPSSTR	Unmodified	1433.7151	0.71505795	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.4	1.36	1		1	2	1	19.338	19.338	2	0	14714	DP1145_8	291.87	253.57			710160000	825	116	773	1333;1334;1335;1336;1337	1908;1909;1910;1911;1912;1913;1914;1915	1912		8	9606
GGAYYPVTVK	Unmodified	1053.5495	0.54949617	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	1.25	1		2	2	1	16.421	16.421	1;2	2.4745E-20	10059	DP1145_8	144.12	94.704			2207500000	826	700	774	1338;1339;1340;1341;1342;1343	1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927	1923		11	9606
GGCVDSTNQSLALLLMTLGQQDVSK	Oxidation (M)	2650.2942	0.29421605	766	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	1	0	4	0				1		23.143	23.143	3	6.6611E-14	19337	DP1145_9	134.28	113.41			6024700	827	766	775	1344	1928;1929;1930	1929	632	3	9606
GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR	Unmodified	2382.9446	0.94456998	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				15.145	15.145	2	5.2287E-15	6488	DP1145_6	167.95	120.95		+	22164000	828	11	776	1345;1346	1931;1932;1933	1931		3	9606
GGGHVAQIYAIR	Unmodified	1240.6677	0.66765425	357	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	15.713	15.713	3	6.0504E-15	8007	DP1145_10	118.03	98.718			240200000	829	357	777	1347	1934	1934		0	9606
GGGPAGAGGEAPAALR	Unmodified	1307.6582	0.65821178	527	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		15.413	15.413	2	3.3771E-11	7668	DP1145_9	147.28	128.5			159190000	830	527	778	1348	1935;1936	1935		2	9606
GGKPEPPAMPQPVPTA	Oxidation (M)	1588.7919	0.79192806	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	1	4	0				1		15.473	15.473	2	0.0095679	7810	DP1145_9	114.87	93.311			462520000	831	205	779	1349	1937	1937	204	1	9606
GGKPEPPAMPQPVPTA	Unmodified	1572.797	0.79701344	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		17.027	17.027	2	0.0033352	10252	DP1145_9	130.69	86.073			0	832	205	779	1350	1938	1938		1	9606
GGNFGFGDSR	Unmodified	1012.4363	0.43625733	201	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	4	0				1		16.823	16.823	2	0.0039491	9987	DP1145_9	98.582	78.1			54197000	833	201	780	1351	1939	1939		1	9606
GGPGSTLSFVGK	Unmodified	1105.5768	0.57677356	653	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	0	5	0					1	17.447	17.447	2	0.002194	10660	DP1145_10	104.42	80.655			15035000	834	653	781	1352	1940	1940		1	9606
GGPTPQEAIQR	Unmodified	1152.5887	0.58873523	687	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	4	0				1		14.895	14.895	2	1.6544E-05	6878	DP1145_9	134.77	85.348			31672000	835	687	782	1353	1941;1942	1941		2	9606
GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK	Unmodified	3222.2743	0.27429656	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					15.33	15.33	3	0.0021117	6689	DP1145_6	54.992	50.026		+	0	836	17	783	1354	1943	1943		1	9606
GGSGSGPTIEEVD	Unmodified	1203.5255	0.52552585	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.123	17.123	2	0.0075248	11456	DP1145_8	90.629	74.089			250450000	837	148	784	1355	1944	1944		1	9606
GGSWVVIDSSINPR	Unmodified	1485.7576	0.75759147	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1	1		1			19.424	19.424	2	8.5053E-57	13166	DP1145_6	184.36	128.35			35863000	838	438	785	1356;1357	1945;1946	1945		1	9606
GGTLQIQLAK	Unmodified	1027.6026	0.60259438	551	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	0	2	0		1				17.099	17.099	2	0.0049892	11950	DP1145_7	96.492	24.8			48310000	839	551	786	1358	1947	1947		1	9606
GGTRGQEPQMKETIMNQEK	Oxidation (M)	2177.0205	0.020500806	197	P20290	BTF3	Transcription factor BTF3	yes	yes	0	1	2	4	0				1		13.707	13.707	4	0.044903	5235	DP1145_9	60.307	24.195			17042000	840	197	787	1359	1948	1948	197	0	9606
GGVLEPEGTVEIK	Unmodified	1326.7031	0.70309628	41	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.554	17.554	2	5.6695E-17	10233	DP1145_6	151.22	92.148			17146000	841	41	788	1360	1949	1949		1	9606
GHAGSVDSIAVDGSGTK	Unmodified	1556.7431	0.74306362	678	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	3	0			1			14.632	14.632	3	0.0069266	7403	DP1145_8	115.8	75.034			64465000	842	678	789	1361	1950	1950		0	9606
GHALLILRPEELGFLR	Unmodified	1833.0625	0.062487683	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	2.5	0.866	1		3			20.342	20.342	2;3;4	0.012661	14546	DP1145_6	84.734	72.833			158280000	843	719	790	1362;1363;1364;1365	1951;1952;1953;1954	1951		3	9606
GHAVGDIPGVR	Unmodified	1076.5727	0.57269123	360	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	5	0					1	15.05	15.05	2	0.00038295	6987	DP1145_10	126.24	87.939			70088000	844	360	791	1366	1955;1956	1955		2	9606
GHENVEAAQAEYIEK	Unmodified	1686.7849	0.78492843	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.67	1.11		1	2	1	2	15.455	15.455	2;3	1.0836E-123	8773	DP1145_8	244.71	200.1			3624699999.9999995	845	116	792	1367;1368;1369;1370;1371;1372	1957;1958;1959;1960;1961;1962;1963;1964;1965	1963		8	9606
GHNQPCLLVGSGR	Unmodified	1393.6885	0.68846605	221	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					15.174	15.174	3	0.0066565	6456	DP1145_6	68.809	47.777			17984000	846	221	793	1373	1966	1966		1	9606
GHNTNVGAIVFHPK	Unmodified	1489.779	0.77899561	53	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			2			15.278	15.278	2;3	3.1546E-09	8371	DP1145_8	155.33	99.873			231330000	847	53	794	1374;1375	1967;1968	1968		2	9606
GHQLLEEVTQGDMSAADTFLSDLPR	Oxidation (M)	2745.2916	0.29157351	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	2.5	0.5		1	1			21.944	21.944	3	1.3347E-06	18567	DP1145_8	107.23	91.647			63745000	848	575	795	1376;1377	1969;1970;1971	1971	505	3	9606
GHYTEGAELVDSVLDVVR	Unmodified	1957.9745	0.97452012	395;131;460;455	P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	3.8	0.748			2	2	1	21.603	21.603	2;3	0	17998	DP1145_8	254.72	176.47			1927599999.9999998	849	131;395;460;455	796	1378;1379;1380;1381;1382	1972;1973;1974;1975;1976;1977;1978;1979;1980	1973		9	9606
GHYTEGAELVDSVLDVVRK	Unmodified	2086.0695	0.069483134	395;131;460;455	P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	1	4	1			1		1	20.68	20.68	3	0.0086319	15740	DP1145_10	73.138	7.9624			326820000	850	131;395;460;455	797	1383;1384	1981;1982	1981		2	9606
GIAYIEFKTEADAEK	Unmodified	1683.8356	0.83556702	194	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				17.886	17.886	3	0.00027755	13115	DP1145_7	120.9	72.851			32195000	851	194	798	1385	1983	1983		0	9606
GIDQCIPLFVEAALER	Unmodified	1829.9346	0.93456956	93	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		2				23.573	23.573	2;3	3.3985000000000004E-35	21620	DP1145_7	170	102.79			9023400	852	93	799	1386;1387	1984;1985;1986;1987	1984		4	9606
GIEQAVQSHAVAEEEAR	Unmodified	1822.881	0.88095408	507	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	2	0		1				16.672	16.672	3	0.009903	11303	DP1145_7	97.579	75.719			93312000	853	507	800	1388	1988	1988		0	9606
GIGMGNIGPAGMGMEGIGFGINK	Oxidation (M)	2193.0381	0.038065125	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	2	0		1				20.804	20.804	2	0.0072373	17520	DP1145_7	76.358	46.335			0	854	307	801	1389	1989	1989	277	1	9606
GILQELFLNK	Unmodified	1173.6758	0.67575932	638	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	3	0			1			22.179	22.179	2	5.5786E-05	18746	DP1145_8	135.77	99.32			3817700	855	638	802	1390	1990	1990		1	9606
GILRPLSTR	Unmodified	1011.6189	0.61891314	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	1	2	0		1				15.64	15.64	2	0.024919	9592	DP1145_7	98.523	32.851			47365000	856	777	803	1391	1991	1991		0	9606
GIPEFWFTIFR	Unmodified	1411.7289	0.72885752	648	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			24.379	24.379	2	0.0047507	21987	DP1145_8	102.62	74.757			5520200	857	648	804	1392	1992;1993	1992		2	9606
GIPEFWLTVFK	Unmodified	1335.7227	0.72270951	325	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3.5	0.5			1	1		23.642	23.642	2	0.0044904	20921	DP1145_8	126.24	80.27			55416000	858	325	805	1393;1394	1994;1995;1996;1997	1994		4	9606
GIQEEMEALVK	Oxidation (M)	1261.6224	0.62240312	502	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	1	0	5	0					1	16.839	16.839	2	0.0024132	9798	DP1145_10	113.62	66.048			16487000	859	502	806	1395	1998;1999	1998	463	2	9606
GIRPAINVGLSVSR	Unmodified	1437.8416	0.84159587	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			17.223	17.223	2	1.5804E-18	11516	DP1145_8	148.78	98.5			51009000	860	215	807	1396	2000	2000		0	9606
GISHVIVDEIHER	Unmodified	1502.7841	0.78414057	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				16.672	16.672	3	0.00043992	11271	DP1145_7	115.37	79.609			84132000	861	427	808	1397	2001	2001		0	9606
GISLNPEQWSQLK	Unmodified	1498.778	0.77799256	317	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	5	0					1	20.289	20.289	2	0.0036187	15033	DP1145_10	123.11	84.358			0	862	317	809	1398	2002	2002		1	9606
GITLSVRP	Unmodified	841.50215	0.50215205	0	A0A075B6Z2	TRAJ56		yes	yes	0	0	1	5	0					1	16.025	16.025	1	0.011445	8356	DP1145_10	77.741	1.7062			2902800000	863	0	810	1399	2003	2003		1	9606
GIVEFSGKPAAR	Unmodified	1230.6721	0.67207093	490	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	3	0			1			15.377	15.377	3	2.9441E-20	8477	DP1145_8	146.11	106.48			32271000	864	490	811	1400	2004	2004		0	9606
GKDQVVILHHMLSK	Oxidation (M)	1619.8817	0.88174613	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	1	1	0	1					14.444	14.444	3	0.014532	5385	DP1145_6	103.66	71.743			8358900	865	681	812	1401	2005	2005	573	0	9606
GKGSLGSQGAKDEPEEELQK	Unmodified	2086.0178	0.017841494	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	2	1.5	0.5	1	1				14.237	14.237	3	4.5759E-65	7560	DP1145_7	174.72	127.5			22196000	866	451	813	1402;1403	2006;2007;2008	2008		2	9606
GKSEVPEDLAGFIELFQTPSHTK	Unmodified	2529.2751	0.27511881	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				21.768	21.768	3	6.2471E-208	18956	DP1145_7	246.53	213.97			71942000	867	276	814	1404	2009;2010	2009		2	9606
GLAFELVYSPAIK	Unmodified	1406.781	0.78095267	398	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	4	0				1		20.916	20.916	2	9.7012E-17	16271	DP1145_9	148.56	103.58			12119000	868	398	815	1405	2011	2011		1	9606
GLAPDLPEDLYHLIK	Unmodified	1692.9087	0.90867238	362	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					2	21.453	21.453	2;3	0.002856	16700	DP1145_10	119.88	80.812			29270000	869	362	816	1406;1407	2012;2013	2013		2	9606
GLAPVQAYLHIPDIIK	Unmodified	1747.0032	0.0032414695	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.78	1.31	2	2	2	2	1	21.056	21.056	2;3	8.74E-60	17714	DP1145_7	182.25	153.19			1493199999.9999998	870	158	817	1408;1409;1410;1411;1412;1413;1414;1415;1416	2014;2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031	2022		18	9606
GLCAIAQAESLR	Unmodified	1287.6605	0.66051996	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		18.223	18.223	2	0.013493	12306	DP1145_9	96.665	67.192			124860000	871	205	818	1417	2032	2032		1	9606
GLCGAIHSSIAK	Unmodified	1212.6285	0.62849155	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				2		15.268	15.268	2;3	3.245E-55	7492	DP1145_9	179.1	128.03			68961000	872	249	819	1418;1419	2033;2034;2035	2033		2	9606
GLDIEGVK	Unmodified	829.45453	0.45453316	625	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	2	0		1				16.743	16.743	2	0.032629	11464	DP1145_7	89.369	8.9069			45186000	873	625	820	1420	2036	2036		1	9606
GLDVDSLVIEHIQVNK	Unmodified	1777.9574	0.95741349	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	19.999	19.999	3	0.00091717	14558	DP1145_10	113.54	85.557			21037000	874	193	821	1421	2037;2038	2037		2	9606
GLDVEDVK	Unmodified	873.44436	0.4443624	186;612	Q92841;P17844	DDX17;DDX5	Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5	no	no	0	0	0	3	0			1			16.063	16.063	2	0.010545	9554	DP1145_8	111.04	36.597			312670000	875	612;186	822	1422	2039;2040	2039		2	9606
GLGAQEQGATDHIK	Unmodified	1423.7056	0.7055559	619	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	0	4	0				1		14.375	14.375	3	5.6979E-13	6132	DP1145_9	141.54	102.96			186600000	876	619	823	1423	2041	2041		0	9606
GLGDCLVK	Unmodified	860.44259	0.44258826	114;162	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	4	0				1		16.623	16.623	2	0.011213	9677	DP1145_9	97.602	42.161			33519000	877	114;162	824	1424	2042	2042		1	9606
GLGTDEESILTLLTSR	Unmodified	1703.8941	0.89414453	139	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	4	0				1		23.234	23.234	2	3.483E-07	19501	DP1145_9	134.99	96.207			2252900	878	139	825	1425	2043	2043		1	9606
GLLEESSFATLFPK	Unmodified	1537.8028	0.80281033	458	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	3.5	0.5			1	1		22.205	22.205	2	0.0023934	18889	DP1145_8	108.9	71.839			8147100	879	458	826	1426;1427	2044;2045;2046;2047	2046		4	9606
GLLKPGLNVVLEGPK	Unmodified	1532.929	0.92901389	650	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	1	4	0				1		18.723	18.723	3	5.3645E-07	13064	DP1145_9	145.1	140.3			77378000	880	650	827	1428	2048	2048		1	9606
GLLLFVDEADAFLR	Unmodified	1577.8453	0.84534384	718	Q9NVI7;Q5T2N8	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	yes	no	0	0	0	3	0			1			24.452	24.452	2	0.0029022	22067	DP1145_8	136.96	115.21			3935200	881	718	828	1429	2049;2050	2049		2	9606
GLLPEELTPLILATQK	Unmodified	1735.0131	0.013137454	169	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	4	0				1		22.676	22.676	2	4.2566E-07	18690	DP1145_9	134.38	83.369			6747200	882	169	829	1430	2051	2051		1	9606
GLLQSGQIPGR	Unmodified	1124.6302	0.63020611	144	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	4	0				1		17.122	17.122	2	6.43E-08	10363	DP1145_9	138.06	89.639			43878000	883	144	830	1431	2052;2053	2052		2	9606
GLLTIYMANLATETLFRMGVAR	2 Oxidation (M)	2472.2869	0.28688625	561	Q86UB9	TMEM135	Transmembrane protein 135	yes	yes	0	2	1	1	0	1					22.087	22.087	3	0.024783	17090	DP1145_6	53.037	38.453			3750100	884	561	831	1432	2054	2054	489;490	1	9606
GLSEAAGQTAQMLER	Oxidation (M)	1576.7515	0.75151981	91	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	1	0	2	0		1				17.567	17.567	2	0.034775	12253	DP1145_7	68.132	38.365			36742000	885	91	832	1433	2055	2055	72	0	9606
GLSEDTTEETLK	Unmodified	1321.6249	0.62490554	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.33	0.471		2	1			16.023	16.023	2	2.0568E-39	10213	DP1145_7	176.38	83.543			0	886	194	833	1434;1435;1436	2056;2057;2058	2057		3	9606
GLSEDTTEETLKESFDGSVR	Unmodified	2199.0179	0.017901073	194	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		1				18.896	18.896	3	2.3233999999999998E-65	14746	DP1145_7	186.72	170.06			970750000	887	194	834	1437	2059	2059		0	9606
GLSSLLYGSIPK	Unmodified	1233.6969	0.69688869	313	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	1	0	1					20.455	20.455	2	0.011559	14575	DP1145_6	85.377	53.956			12686000	888	313	835	1438	2060	2060		1	9606
GLTDLSACK	Unmodified	963.46953	0.46953129	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			16.087	16.087	2	0.0028497	9640	DP1145_8	107.29	35.58			58849000	889	38	836	1439	2061	2061		1	9606
GLTSVINQK	Unmodified	958.54475	0.54474515	129	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		15.958	15.958	2	9.5971E-12	8566	DP1145_9	148.33	93.541			0	890	129	837	1440	2062	2062		1	9606
GLVMVKPGSIKPHQK	Oxidation (M)	1633.9338	0.9337817	292	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	1	2	2.75	1.09	1		2	1		13.927	13.927	3;4	4.3072E-05	6442	DP1145_8	127.71	105.77			60339000	891	292	838	1441;1442;1443;1444	2063;2064;2065;2066;2067	2066	271	4	9606
GLVMVKPGSIKPHQK	Unmodified	1617.9389	0.93886707	292	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	2	4	0				1		14.474	14.474	3	7.6193E-05	6264	DP1145_9	123.28	102.03			16586000	892	292	838	1445	2068	2068		0	9606
GLYAAFDCTATMK	Oxidation (M)	1463.6425	0.64248664	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				18.199	18.199	2	0.0001412	13709	DP1145_7	118.4	80.895			579840000	893	158	839	1446	2069	2069	163	0	9606
GLYAAFDCTATMK	Unmodified	1447.6476	0.64757201	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				18.996	18.996	2	4.9266E-20	14825	DP1145_7	147.73	122.88			103340000	894	158	839	1447	2070	2070		0	9606
GLYDGPVCEVSVTPK	Unmodified	1619.7865	0.78650834	502	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	5	0					1	18.448	18.448	2	0.0077093	12212	DP1145_10	93.959	60.215			21024000	895	502	840	1448	2071	2071		1	9606
GMTLVTPLQLLLFASK	Oxidation (M)	1746.9954	0.9953789	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	1	0	2	0.816	1	1	1			24.193	24.193	2	2.7893E-17	20088	DP1145_6	147.96	147.96			23547000	896	427	841	1449;1450;1451	2072;2073;2074;2075;2076;2077;2078;2079	2073	376	8	9606
GNFGGSFAGSFGGAGGHAPGVAR	Unmodified	2033.9456	0.94562002	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	4	0				1		17.822	17.822	3	0.034945	11674	DP1145_9	50.884	29.081			22439000	897	307	842	1452	2080	2080		0	9606
GNIPTLNR	Unmodified	883.48756	0.48756462	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.732	15.732	2	0.0042008	6976	DP1145_6	107.32	66.015			719890000	898	438	843	1453	2081;2082	2081		2	9606
GNSRPGTPSAEGGSTSSTLR	Unmodified	1917.914	0.91404512	242	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3.4	1.02		1	2	1	1	13.762	13.762	2;3	1.8823E-94	6159	DP1145_8	231.4	206.6			195490000	899	242	844	1454;1455;1456;1457;1458	2083;2084;2085;2086;2087;2088;2089;2090;2091;2092	2087		10	9606
GNTAAYLLYAFTR	Unmodified	1459.746	0.74596415	319	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			22.166	22.166	2	5.8045E-17	18743	DP1145_8	151.13	119.84			5450200	900	319	845	1459	2093	2093		1	9606
GNVGFVFTK	Unmodified	967.51272	0.51271674	119	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				1		18.023	18.023	2	0.0077045	11745	DP1145_9	103.56	75.345			838220000	901	119	846	1460	2094	2094		0	9606
GNVGFVFTKEDLTEIRDMLLANK	Oxidation (M)	2625.3472	0.3472379	119	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	1	2	4	0				1		21.496	21.496	3	4.9702E-05	16902	DP1145_9	111.09	83.575			42329000	902	119	847	1461	2095	2095	102	0	9606
GPAFVNPLIPESPEEEELFR	Unmodified	2269.1267	0.12666366	770	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	1	0	1					22.463	22.463	2	9.0771E-132	17652	DP1145_6	267.67	226.19			2688800	903	770	848	1462	2096;2097	2097		2	9606
GPAPAPQQCSEPETK	Unmodified	1595.725	0.72497071	514	Q3YEC7	RABL6	Rab-like protein 6	yes	yes	0	0	0	2	0		1				13.719	13.719	2	0.0074124	6950	DP1145_7	97.163	76.859			1326000	904	514	849	1463	2098;2099	2098		2	9606
GPAVGIDLGTTYSCVGVFQHGK	Unmodified	2262.1103	0.11030209	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			19.446	19.446	2;3	0.00031615	15005	DP1145_8	111.66	100.3			161010000	905	154	850	1464;1465	2100;2101;2102	2100		3	9606
GPFPIIV	Unmodified	741.44251	0.44251191	9	CON__P02666			yes	yes	0	0	0	4.5	0.5				1	1	22.516	22.516	1	0.017401	18188	DP1145_10	102.87	102.87		+	163050000	906	9	851	1466;1467	2103;2104	2103		2	
GPGLGSTQGQTIALPAQGLIEFR	Unmodified	2310.2332	0.23319442	410	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	4	0				1		21.31	21.31	2	0.0026821	16833	DP1145_9	74.772	51.283			8642900	907	410	852	1468	2105	2105		1	9606
GPLLVSTESHPVK	Unmodified	1362.7507	0.75071518	773	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		15.218	15.218	2	0.010272	7401	DP1145_9	87.568	58.871			52291000	908	773	853	1469	2106	2106		1	9606
GPLQSVQVFGR	Unmodified	1186.6459	0.64585618	357	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	5	0					1	18.648	18.648	2	5.7537E-79	12730	DP1145_10	204.36	175.2			107680000	909	357	854	1470	2107;2108;2109	2108		3	9606
GPQPPTVSPIR	Unmodified	1147.635	0.63495714	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	3.67	1.25		1		1	1	16.066	16.066	2	0.00066109	8603	DP1145_10	123.86	94.711			213990000	910	277	855	1471;1472;1473	2110;2111;2112	2110		2	9606
GPSSVEDIKAKMQASIEK	Oxidation (M)	1932.9826	0.98264196	127	P06748	NPM1	Nucleophosmin	yes	yes	0	1	2	4	0				1		14.804	14.804	3	0.015944	6684	DP1145_9	77.726	46.987			19012000	911	127	856	1474	2113	2113	110	1	9606
GPSWDPFRDWYPHSR	Unmodified	1901.8598	0.85976513	111	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	1	5	0					1	20.033	20.033	4	0.028908	14598	DP1145_10	57.414	34.052			16924000	912	111	857	1475	2114	2114		0	9606
GQAVTLLPFFTSLTGGSLEELRR	Unmodified	2491.3435	0.34347315	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					23.146	23.146	3	0.00073781	18596	DP1145_6	84.499	47.099			2540900	913	401	858	1476	2115;2116;2117	2115		3	9606
GQDPGAPQLQSESKPPK	Unmodified	1762.885	0.88497683	529	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3.5	0.5			1	1		14.403	14.403	3	8.4964E-61	6988	DP1145_8	188.19	153.1			76081000	914	529	859	1477;1478	2118;2119;2120	2118		2	9606
GQDPGAPQLQSESKPPKK	Unmodified	1890.9799	0.97993984	529	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	2	3	0			1			12.936	12.936	4	0.016888	5336	DP1145_8	109.14	89.377			1755200	915	529	860	1479	2121	2121		1	9606
GQIGAPMPGK	Unmodified	954.49569	0.49568646	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				15.028	15.028	2	0.041492	8822	DP1145_7	73.26	35.702			70658000	916	158	861	1480	2122	2122		1	9606
GQNDLMGTAEDFADQFLR	Oxidation (M)	2042.9004	0.90036889	47	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	1	0	1	0	1					22.558	22.558	2	0	17740	DP1145_6	317.99	291.63			8892100	917	47	862	1481	2123;2124	2124	41	2	9606
GQPDVVVKEDEEYKR	Unmodified	1789.8846	0.88464248	210	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	2	4	0				1		14.704	14.704	3	0.028189	6596	DP1145_9	65.956	26.95			9751200	918	210	863	1482	2125	2125		0	9606
GQSEDPGSLLSLFR	Unmodified	1504.7522	0.75217174	135	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1.5	0.5	1	1				22.115	22.115	2	2.2358E-11	17170	DP1145_6	141.08	80.686			39961000	919	135	864	1483;1484	2126;2127;2128	2126		3	9606
GQVEVFALR	Unmodified	1017.5607	0.56072956	654	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	3	0			1			18.423	18.423	2	0.003023	13195	DP1145_8	108.09	78.938			18351000	920	654	865	1485	2129	2129		1	9606
GQYNTYPIK	Unmodified	1082.5397	0.53965977	347	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	1	0	1					15.833	15.833	2	0.00702	7413	DP1145_6	118.74	72.791			51331000	921	347	866	1486	2130	2130		1	9606
GRDDCGTFEDTGPLLQFDYK	Unmodified	2333.027	0.027025972	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.5	0.957	1	2	2	1		20.126	20.126	2;3	1.8801E-285	15925	DP1145_8	273.54	261.56			6152199999.999999	922	474	867	1487;1488;1489;1490;1491;1492	2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143	2140		13	9606
GRPSQEPPLAPPHR	Unmodified	1537.8114	0.81135837	531	Q5VWQ0	RSBN1	Round spermatid basic protein 1	yes	yes	0	0	1	3	1		1		1		14.015	14.015	3	0.00059464	7214	DP1145_7	141.34	101.33			14309000	923	531	868	1493;1494	2144;2145	2144		1	9606
GSFEGTSQNLPK	Unmodified	1263.6095	0.60953025	579	Q8N567	ZCCHC9	Zinc finger CCHC domain-containing protein 9	yes	yes	0	0	0	4	0				1		15.677	15.677	2	0.0063767	8156	DP1145_9	94.409	62.089			21254000	924	579	869	1495	2146	2146		1	9606
GSFSDTGLGDGK	Unmodified	1139.5095	0.50948185	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		1				16.042	16.042	2	0.012921	10242	DP1145_7	83.862	38.182			116380000	925	767	870	1496	2147	2147		1	9606
GSGNLEAIHIIK	Unmodified	1250.6983	0.69828568	400	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	3	0			1			16.694	16.694	2	0.013623	10778	DP1145_8	83.081	50.667			12557000	926	400	871	1497	2148	2148		1	9606
GSKPGKNVQLQENEIR	Unmodified	1795.9541	0.95405945	251	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	2	3	0			1			14.031	14.031	3	0.016248	6484	DP1145_8	119.96	85.687			7069900	927	251	872	1498	2149	2149		1	9606
GSLGGGFSSGGFSGGSFSR	Unmodified	1706.7649	0.76486169	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3	0			1			18.872	18.872	2	0.040228	14129	DP1145_8	68.168	45.839		+	26878000	928	15	873	1499	2150	2150		1	9606
GSLGQGTAPVLPGK	Unmodified	1280.7089	0.70885036	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				16.537	16.537	2	2.7644E-17	8514	DP1145_6	149.96	96.202			1008999999.9999999	929	451	874	1500;1501	2151;2152;2153	2151		3	9606
GSLGSQGAKDEPEEELQK	Unmodified	1900.9014	0.90141475	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2.43	1.18	2	2	1	2		15.019	15.019	2;3	1.0011E-35	8841	DP1145_7	168	126.46			194770000	930	451	875	1502;1503;1504;1505;1506;1507;1508	2154;2155;2156;2157;2158;2159;2160	2156		7	9606
GSNSLPLLR	Unmodified	955.54508	0.5450795	333	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	1	0	1					17.754	17.754	2	0.0061708	10479	DP1145_6	116.9	73.657			12246000	931	333	876	1509	2161	2161		1	9606
GSPTGGAQLLK	Unmodified	1027.5662	0.56620887	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.816		1	1	1		15.453	15.453	2	0.00050927	9282	DP1145_7	125.16	90.988			5859199999.999999	932	474	877	1510;1511;1512	2162;2163;2164;2165;2166	2162		5	9606
GSSAGGGGSGAAAATAATAGGQHR	Unmodified	1926.8892	0.88922736	33	O00458	IFRD1	Interferon-related developmental regulator 1	yes	yes	0	0	0	3	0			1			13.738	13.738	3	3.7603E-06	6185	DP1145_8	105.38	84.333			7553400	933	33	878	1513	2167	2167		1	9606
GSSGVGLTAAVLR	Unmodified	1186.667	0.66698555	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				17.899	17.899	2	0.011866	13258	DP1145_7	103.31	71.782			41168000	934	236	879	1514	2168	2168		0	9606
GSTIETEQKEDKGEDSEPVTSK	Unmodified	2393.1082	0.10817264	583	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	2	2.5	0.5		1	1			13.349	13.349	3	4.2028E-05	5912	DP1145_8	119.37	97.427			3231200	935	583	880	1515;1516	2169;2170	2170		2	9606
GSVLEPEGTVEIK	Unmodified	1356.7137	0.71366097	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.33	1.25	1	1		1		17.55	17.55	2	6.6388E-08	11165	DP1145_9	132.25	53.986			1353400000	936	438	881	1517;1518;1519	2171;2172;2173;2174;2175	2175		4	9606
GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR	Unmodified	3311.3008	0.30084566	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					15.428	15.428	3	7.3354E-83	6761	DP1145_6	175.34	119.56		+	17355000	937	11	882	1520	2176	2176		0	9606
GSYSCEVTHEGSTVTK	Unmodified	1740.7625	0.76247843	20	CON__Q1RMN8			yes	yes	0	0	0	5	0					1	14.508	14.508	3	0.002963	6272	DP1145_10	86.214	71.814		+	28475000	938	20	883	1521	2177	2177		1	
GTAYTFFTPGNLK	Unmodified	1415.7085	0.70851601	612	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	2	0		1				19.763	19.763	2	0.026028	15940	DP1145_7	73.841	40.616			10809000	939	612	884	1522	2178	2178		0	9606
GTEASSGTEAATGLEGEEK	Unmodified	1822.8068	0.80684567	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				15.64	15.64	2	2.5836E-80	9607	DP1145_7	188.13	139.69			41367000	940	575	885	1523	2179	2179		0	9606
GTGIVSAPVPK	Unmodified	1024.5917	0.59169534	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	2.5	1.5	1			1		15.755	15.755	2	0.0073482	8204	DP1145_9	93.598	57.151			457920000	941	173	886	1524;1525	2180;2181;2182	2181		3	9606
GTHFVQLCCQR	Unmodified	1404.6391	0.63907301	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			15.377	15.377	2;3	0.0009083	8404	DP1145_8	103.31	80.591			1611299999.9999998	942	700	887	1526;1527	2183;2184;2185	2183		3	9606
GTIEILSDVQLIK	Unmodified	1427.8235	0.82354577	119	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		21.11	21.11	2	0.00079395	16522	DP1145_9	113.93	72.05			55951000	943	119	888	1528	2186;2187	2187		2	9606
GTLIDNQFK	Unmodified	1034.5397	0.53965977	690	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	4	0				1		17.022	17.022	2	1.5033E-26	10278	DP1145_9	151.29	100.23			59203000	944	690	889	1529	2188	2188		0	9606
GTMTTGHNVADLVVILK	Oxidation (M)	1783.9502	0.95021962	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	1	0	4	0				1		18.923	18.923	3	0.022795	13279	DP1145_9	63.462	42.754			42528000	945	435	890	1530	2189	2189	380	1	9606
GTPLDTEVPMER	Oxidation (M)	1359.634	0.63403044	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			16.555	16.555	2	1.2136E-05	11076	DP1145_7	126.39	98.616			909360000	946	158	891	1531;1532;1533	2190;2191;2192;2193;2194;2195	2191	164	6	9606
GTPLDTEVPMER	Unmodified	1343.6391	0.63911582	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				17.626	17.626	2	3.7537E-16	12763	DP1145_7	147.4	92.293			912880000	947	158	891	1534;1535	2196;2197	2197		1	9606
GVAMNPVEHPFGGGNHQHIGK	Oxidation (M)	2198.044	0.04395386	383	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	0	4	0				2		14.692	14.692	4;5	0.00028227	6650	DP1145_9	86.367	54.719			97301000	948	383	892	1536;1537	2198;2199	2198	326	2	9606
GVAMNPVEHPFGGGNHQHIGKPSTIR	Oxidation (M)	2752.3616	0.3615996	383	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	1	1	4	0				2		15.195	15.195	5;6	0.00081367	7395	DP1145_9	58.324	40.575			627040000	949	383	893	1538;1539	2200;2201;2202;2203	2201	326	4	9606
GVAMNPVEHPFGGGNHQHIGKPSTIR	Unmodified	2736.3667	0.36668498	383	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	4	0				2		15.677	15.677	5;6	0.044165	8289	DP1145_9	27.168	12.394			159170000	950	383	893	1540;1541	2204;2205	2204		2	9606
GVAPLWMR	Oxidation (M)	944.49021	0.49020716	409	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	0	1	0	1					17.554	17.554	2	0.034995	10347	DP1145_6	75.311	50.312			69725000	951	409	894	1542	2206	2206	366	1	9606
GVFEAIVDQSPFVPEETMEEQK	Oxidation (M)	2524.1679	0.16793613	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.9	1.45	2	3	1	2	2	21.83	21.83	2;3	2.2852E-41	16761	DP1145_6	163.9	151.61			7563699999.999999	952	474	895	1543;1544;1545;1546;1547;1548;1549;1550;1551;1552	2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226	2212	444	20	9606
GVFEAIVDQSPFVPEETMEEQK	Unmodified	2508.173	0.17302151	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.78	1.31	2	2	2	2	1	22.411	22.411	2;3	1.8242E-207	19699	DP1145_7	201.96	185.17			2423100000	953	474	895	1553;1554;1555;1556;1557;1558;1559;1560;1561	2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244	2233		18	9606
GVFEAIVDQSPFVPEETMEEQKTK	Oxidation (M)	2753.3106	0.31057762	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2	0		1				20.665	20.665	2	5.6916E-07	17477	DP1145_7	117.2	95.963			52756000	954	474	896	1562	2245	2245	444	1	9606
GVFEAIVDQSPFVPEETMEEQKTK	Unmodified	2737.3157	0.315663	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				21.129	21.129	3	4.3559E-09	18022	DP1145_7	120.66	93.575			206340000	955	474	896	1563	2246;2247	2246		2	9606
GVFVQSVLPYFVATK	Unmodified	1653.913	0.91302948	519	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	2.5	1.5	1			1		22.19	22.19	2	5.5722E-07	17926	DP1145_9	171.67	126.3			41415000	956	519	897	1564;1565	2248;2249	2249		2	9606
GVISDILDWK	Unmodified	1144.6128	0.61282471	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	4	0.816			1	1	1	22.259	22.259	2	6.0539E-12	18986	DP1145_8	153.04	112.97			85273000	957	438	898	1566;1567;1568	2250;2251;2252;2253	2252		4	9606
GVIVDKDFSHPQMPK	Oxidation (M)	1712.8556	0.85559095	288	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	3	0			1			15.178	15.178	3	0.013282	8137	DP1145_8	82.85	59.034			45632000	958	288	899	1569	2254	2254	268	1	9606
GVLLFGPPGTGK	Unmodified	1141.6495	0.64954457	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3	0			1			19.325	19.325	2	0.042528	14633	DP1145_8	68.847	48.85			45663000	959	248	900	1570	2255	2255		1	9606
GVLLMLFGGVPK	Unmodified	1229.7206	0.72060102	471	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	2	0		1				22.884	22.884	2	0.01237	20685	DP1145_7	84.476	52.061			6193300	960	471	901	1571	2256;2257	2257		2	9606
GVPGPFLVCGPLSTLPNWMAEFK	Oxidation (M)	2532.2545	0.25452349	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	1	0	2	0		1				23.609	23.609	2	0.00054223	21705	DP1145_7	80.387	33.401			3188000	961	714	902	1572	2258	2258	596	1	9606
GVQSAAVQAFLK	Unmodified	1217.6768	0.67682195	536	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	2	0		1				18.896	18.896	2	0.0021996	14765	DP1145_7	104.2	55.777			145860000	962	536	903	1573	2259	2259		1	9606
GVSFTFGAEVVAK	Unmodified	1310.6871	0.68705229	251	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	no	0	0	0	3.5	0.5			1	1		19.524	19.524	2	2.2534E-06	15140	DP1145_8	128.35	86.01			332490000	963	251	904	1574;1575	2260;2261;2262;2263	2260		4	9606
GVTFLFPIQAK	Unmodified	1219.6965	0.69649476	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2.5	0.5		1	1			20.872	20.872	2	2.2E-51	17632	DP1145_7	176.44	140			97657000	964	709	905	1576;1577	2264;2265	2264		0	9606
GVTHNIALLR	Unmodified	1092.6404	0.64037687	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.6	1.36	2		1	2		16.021	16.021	2	6.0383E-07	9524	DP1145_8	138.06	95.193			953160000	965	115	906	1578;1579;1580;1581;1582	2266;2267;2268;2269;2270;2271	2269		6	9606
GVTIASGGVLPNIHPELLAK	Unmodified	1985.131	0.13096118	76	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				1		19.623	19.623	3	0.0012016	14250	DP1145_9	88.319	69.331			55661000	966	76	907	1583	2272	2272		1	9606
GVTNDQVDPSVDVLK	Unmodified	1584.7995	0.79951586	766	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		17.923	17.923	2	0.041278	11868	DP1145_9	68.069	28.889			54685000	967	766	908	1584	2273	2273		1	9606
GVTYLFPIQVK	Unmodified	1263.7227	0.72270951	652	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				20.465	20.465	2	1.8143E-05	17200	DP1145_7	134.48	134.48			60779000	968	652	909	1585	2274	2274		1	9606
GVVDSEDLPLNISR	Unmodified	1512.7784	0.77838649	136;132	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	2	0.816	1	1	1			19.249	19.249	2	2.8308E-94	12870	DP1145_6	202.03	0			1025699999.9999999	969	132;136	910	1586;1587;1588	2275;2276;2277;2278	2275		2	9606
GVVEVTHDLQK	Unmodified	1223.651	0.65100113	299	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	4	0				1		15.318	15.318	2	1.4599E-78	7508	DP1145_9	200.86	132.48			77356000	970	299	911	1589	2279	2279		1	9606
GVVMHTFGGYANSK	Oxidation (M)	1482.6925	0.69254837	545	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	1	0	4	0				2		15.212	15.212	2;3	2.7592E-12	7477	DP1145_9	145.28	119.65			38013000	971	545	912	1590;1591	2280;2281	2281	482	2	9606
GVVQELQQAISK	Unmodified	1298.7194	0.71941505	225	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		20.124	20.124	2	0.01422	15136	DP1145_9	82.417	44.113			38793000	972	225	913	1592	2282	2282		1	9606
GYAFIEFASFEDAK	Unmodified	1593.7351	0.73512469	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0			1			21.818	21.818	2	0.0080474	18415	DP1145_8	89.548	70.285			66939000	973	194	914	1593	2283	2283		1	9606
GYLDKLEPSK	Unmodified	1148.6077	0.60773933	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			16.64	16.64	2	1.9796E-10	10540	DP1145_8	152.06	107.31			173980000	974	215	915	1594	2284	2284		1	9606
GYLGPEQLPDCLK	Unmodified	1488.7283	0.72826518	263	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		19.123	19.123	2	0.0013681	13618	DP1145_9	110.38	72.826			12552000	975	263	916	1595	2285	2285		1	9606
GYLISGSSYAR	Unmodified	1172.5826	0.58258722	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				17.157	17.157	2	7.067E-18	12006	DP1145_7	153.08	98.926			0	976	566	917	1596	2286	2286		1	9606
GYSFTTTAER	Unmodified	1131.5197	0.51965261	337;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	2.75	1.48	1	1	1		1	16.279	16.279	2	3.0167E-60	8824	DP1145_10	190.73	180.02			440300000	977	337;389	918	1597;1598;1599;1600	2287;2288;2289;2290;2291;2292;2293	2287		7	9606
HAASTVQILGAEK	Unmodified	1323.7147	0.71466402	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			15.131	15.131	2	0.0035588	8119	DP1145_8	114.76	77.208			0	978	768	919	1601	2294	2294		1	9606
HAGGVTGGWDNLLAVIPGGSSTPLIPK	Unmodified	2613.3915	0.39148597	297	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	3	0			1			22.117	22.117	3	0.001903	18718	DP1145_8	62.1	37.873			4229900	979	297	920	1602	2295	2295		0	9606
HALIIYDDLSK	Unmodified	1286.6871	0.68705229	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.723	17.723	2	0.027101	12407	DP1145_8	98.629	54.822			279690000	980	215	921	1603	2296	2296		1	9606
HALYSHSAEVQVR	Unmodified	1495.7532	0.75317479	549	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	1	0	1					14.195	14.195	3	0.00098094	5092	DP1145_6	100.04	72.697			0	981	549	922	1604	2297	2297		1	9606
HDLDLICR	Unmodified	1040.5073	0.50731378	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	1.12		1	1	1	1	16.369	16.369	2	2.0885E-121	9232	DP1145_9	225.8	173.16			4914000000	982	251;352	923	1605;1606;1607;1608	2298;2299;2300;2301;2302;2303;2304	2304		6	9606
HDSPDLAPNVTYSLPR	Unmodified	1780.8744	0.87441214	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	2.33	0.471		2	1			18.007	18.007	2;3	0.0033326	12743	DP1145_8	77.726	60.662			87110000	983	656	924	1609;1610;1611	2305;2306;2307	2307		1	9606
HDVGLPGVSR	Unmodified	1035.5461	0.54614213	396	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	2	0		1				15.397	15.397	2	0.0076633	9192	DP1145_7	112.41	66.439			31230000	984	396	925	1612	2308	2308		1	9606
HEGLGAFYK	Unmodified	1020.5029	0.50288033	541	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	3	0			1			16.05	16.05	2	1.4406E-60	9561	DP1145_8	187.55	88.549			0	985	541	926	1613	2309	2309		1	9606
HEMLPEFYK	Oxidation (M)	1208.5536	0.55359527	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	1	0	2	0		1				16.571	16.571	2	0.014357	10997	DP1145_7	87.696	71.363			85270000	986	566	927	1614	2310	2310	493	1	9606
HEMLPEFYK	Unmodified	1192.5587	0.55868065	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				17.399	17.399	2	0.0058692	12411	DP1145_7	116.25	74.821			39142000	987	566	927	1615	2311	2311		1	9606
HFSQGSALILHQR	Unmodified	1492.7899	0.78989465	180	P17028	ZNF24	Zinc finger protein 24	yes	yes	0	0	0	4	0				1		15.501	15.501	3	5.736E-14	7881	DP1145_9	141.58	99.486			26824000	988	180	928	1616	2312	2312		0	9606
HFSVEGQLEFR	Unmodified	1347.6571	0.65714914	136;132	P07900;Q14568;Q58FG1;P08238;Q58FF7	HSP90AA1;HSP90AA2P;HSP90AA4P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	0	2	0		1				17.999	17.999	3	0.018885	13316	DP1145_7	68.786	43.718			7303000	989	132;136	929	1617	2313	2313		1	9606
HGDLPDIQIK	Unmodified	1134.6033	0.60332266	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1.5	0.5	1	1				16.775	16.775	2	1.9239E-07	8963	DP1145_6	143.7	95.744			82783000	990	401	930	1618;1619	2314;2315	2314		2	9606
HGDVITIIDR	Unmodified	1137.6142	0.6142217	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			16.74	16.74	2	1.5896E-62	11449	DP1145_7	190.62	140.5			84177000	991	276	931	1620;1621;1622	2316;2317;2318	2317		2	9606
HGEEVTPEDVLSAAMYPDVFAHFK	Oxidation (M)	2704.2479	0.24791778	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.4	1.02	1	2	1	1		21.238	21.238	3;4	5.958999999999999E-19	18272	DP1145_7	139.43	127			808910000	992	158	932	1623;1624;1625;1626;1627	2319;2320;2321;2322;2323;2324;2325;2326	2321	165	8	9606
HGEEVTPEDVLSAAMYPDVFAHFK	Unmodified	2688.253	0.25300316	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.4	1.02	1	2	1	1		22.137	22.137	3;4	6.0515E-60	19481	DP1145_7	177.29	158.6			182960000	993	158	932	1628;1629;1630;1631;1632	2327;2328;2329;2330;2331;2332;2333;2334;2335;2336	2330		10	9606
HGNALWLNER	Unmodified	1208.6051	0.60505399	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	1.5	1			1		16.451	16.451	2	3.1529E-47	8449	DP1145_6	186.16	149.6			179900000	994	115	933	1633;1634	2337;2338;2339;2340	2338		4	9606
HGSLGFLPR	Unmodified	982.53485	0.53484916	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2.5	1.5	1			1		16.642	16.642	2	1.6753E-34	8882	DP1145_6	176.41	126.82			396510000	995	257	934	1635;1636	2341;2342	2341		2	9606
HGVDVEVQGPHEAR	Unmodified	1528.7383	0.73825301	701	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1	0	1					14.045	14.045	3	0.0012262	4920	DP1145_6	114.74	76.803			2113900	996	701	935	1637	2343	2343		0	9606
HGVQELEIELQSQLSK	Unmodified	1836.9581	0.95814177	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	2	0		1				19.864	19.864	2	4.8020000000000005E-210	16238	DP1145_7	245.4	185.29		+	10788000	997	17	936	1638	2344	2344		0	9606
HGVVPLATYMR	Unmodified	1242.6543	0.65431237	279	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					2	17.184	17.184	2;3	0.0097953	10395	DP1145_10	85.355	22.888			54801000	998	279	937	1639;1640	2345;2346	2346		1	9606
HGYIGEFEIIDDHR	Unmodified	1699.7954	0.79543354	356	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					2	18.048	18.048	2;3	1.3335E-09	11810	DP1145_10	116.9	89.753			11293000	999	356	938	1641;1642	2347;2348	2348		2	9606
HHLQPENPGPGGAAPSLEQNR	Unmodified	2205.0675	0.067526074	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.59	1.24	3	7	3	2	2	20.608	20.608	2;3;4	1.5099E-181	8062	DP1145_8	241.39	180.18			31646000000	1000	474	939	1643;1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;1655;1656;1657;1658;1659	2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388;2389;2390;2391;2392	2389		44	9606
HHQEEDAGPTQPSPAKPQLK	Unmodified	2194.0767	0.076693777	677	Q9C086	INO80B	INO80 complex subunit B	yes	yes	0	0	1	4	0				1		12.906	12.906	4	0.0091312	4440	DP1145_9	88.283	59.009			768620	1001	677	940	1660	2393	2393		0	9606
HIANYISGIQTIGHR	Unmodified	1678.8903	0.89033698	494	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					17.153	17.153	3	0.022914	9681	DP1145_6	63.31	33.672			20594000	1002	494	941	1661	2394	2394		0	9606
HIDFSLR	Unmodified	886.4661	0.4661009	281	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1	0	1					16.771	16.771	2	4.0771000000000005E-34	8891	DP1145_6	148.21	38.502			59952000	1003	281	942	1662	2395	2395		0	9606
HIEIQVLGDK	Unmodified	1150.6346	0.63462279	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.74	16.74	2	1.0845E-17	10808	DP1145_8	158.79	103.11			1636499999.9999998	1004	115	943	1663;1664;1665;1666	2396;2397;2398;2399;2400;2401;2402	2399		7	9606
HIEVQILGDQYGNILHLYER	Unmodified	2409.2441	0.24409346	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				20.715	20.715	3	2.2821E-15	17310	DP1145_7	135.21	118.01			0	1005	158	944	1667;1668	2403;2404	2403		2	9606
HIMGQNVADYMR	2 Oxidation (M)	1465.6442	0.64421797	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	0	2.5	1.5	1			1		14.71	14.71	2;3	0.027479	6450	DP1145_9	60.49	46.904			312170000	1006	278	945	1669;1670	2405;2406	2406	259;260	2	9606
HIMGQNVADYMR	Oxidation (M)	1449.6493	0.64930335	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	4	0				2		16.176	16.176	2;3	0.014171	8947	DP1145_9	68.44	54.197			67707000	1007	278	945	1671;1672	2407;2408	2408	259;260	2	9606
HISVLVPCFLTFPK	Unmodified	1656.9062	0.90616996	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				21.229	21.229	2	4.7254E-06	18173	DP1145_7	127.42	95.361			16363000	1008	777	946	1673	2409	2409		0	9606
HIYYITGETK	Unmodified	1223.6186	0.61863837	132	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	2	0		1				15.539	15.539	2	0.011909	9599	DP1145_7	90.601	65.042			75755000	1009	132	947	1674	2410	2410		1	9606
HKLDVTSVEDYK	Unmodified	1432.7198	0.71980898	288	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	3	0			1			15.691	15.691	3	0.042834	8977	DP1145_8	62.042	25.097			8951200	1010	288	948	1675	2411	2411		1	9606
HLCGDTNYAWPTAEIAVMGAK	Oxidation (M)	2320.0616	0.061637339	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			2			18.924	18.924	2;3	7.5584E-15	14193	DP1145_8	142.57	112.51			369240000	1011	116	949	1676;1677	2412;2413;2414	2414	99	3	9606
HLDQIIPR	Unmodified	990.56106	0.56106391	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					15.802	15.802	2	0.01487	7416	DP1145_6	116.37	77.409			0	1012	608	950	1678	2415	2415		1	9606
HLEINPDHPIVETLR	Unmodified	1781.9424	0.94243213	136	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				17.299	17.299	3	0.0065048	12396	DP1145_7	78.326	57.498			246840000	1013	136	951	1679	2416	2416		1	9606
HLEPALAFQLELNR	Unmodified	1649.8889	0.88893999	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					19.762	19.762	2	0.0091467	13782	DP1145_6	87.298	56.748			41588000	1014	41;438	952	1680	2417	2417		1	9606
HLIFVLNK	Unmodified	982.59639	0.59638679	459	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	2	0		1				17.699	17.699	2	0.035256	12957	DP1145_7	88.643	14.668			40899000	1015	459	953	1681	2418	2418		1	9606
HLLIGVSSDR	Unmodified	1095.6037	0.60365701	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		15.878	15.878	2	0.029299	8459	DP1145_9	78.264	52.325			174360000	1016	249	954	1682	2419	2419		1	9606
HLLPVETQR	Unmodified	1091.6087	0.60874239	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					15.328	15.328	2	0.0037958	6636	DP1145_6	107.29	69.208			12877000	1017	466	955	1683	2420	2420		0	9606
HLLSQPLFTESQK	Unmodified	1526.8093	0.80929269	680	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				17.423	17.423	2	0.0037658	12428	DP1145_7	101.35	63.632			0	1018	680	956	1684	2421	2421		1	9606
HLLTLKDDAVK	Unmodified	1251.7187	0.71868677	708	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			15.278	15.278	3	5.4769E-05	8447	DP1145_8	131.12	103.34			31499000	1019	708	957	1685	2422	2422		1	9606
HLLTLKDDAVKK	Unmodified	1379.8136	0.81364979	708	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	2	3	0			1			14.431	14.431	3	0.0010253	7053	DP1145_8	108.72	82.09			14639000	1020	708	958	1686	2423	2423		0	9606
HLPSTEPDPHVVR	Unmodified	1482.7579	0.75792582	665	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	1.5	0.5	1	1				14.466	14.466	3	0.0023974	7948	DP1145_7	78.763	49.296			27177000	1021	665	959	1687;1688	2424;2425	2425		1	9606
HLVDEPQNLIK	Unmodified	1304.7089	0.70885036	10	CON__P02769			yes	yes	0	0	0	2.5	0.5		1	1			16.656	16.656	2	1.4211E-39	10452	DP1145_8	150.81	105.79		+	281150000	1022	10	960	1689;1690	2426;2427	2427		0	
HLVFPLLEFLSVK	Unmodified	1540.9017	0.90173651	336	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	3	0			1			23.672	23.672	2	9.6012E-06	20836	DP1145_8	125.74	104.96			9046400	1023	336	961	1691	2428;2429	2429		2	9606
HMFHVAWVDPEDPYK	Oxidation (M)	1885.8458	0.84575455	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					18.255	18.255	2;3	0.00034524	11465	DP1145_6	116.19	109.91			250210000	1024	438	962	1692;1693	2430;2431	2430	391	2	9606
HMFHVAWVDPEDPYK	Unmodified	1869.8508	0.85083993	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.055	19.055	3	0.0030694	12718	DP1145_6	97.273	67.782			64212000	1025	438	962	1694	2432;2433	2433		2	9606
HMFHVAWVDPEDPYKGYR	Oxidation (M)	2262.0317	0.03165784	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					18.155	18.155	3;4	4.7273E-19	11190	DP1145_6	151.22	131.46			161670000	1026	438	963	1695;1696	2434;2435;2436	2435	391	3	9606
HMFHVAWVDPEDPYKGYR	Unmodified	2246.0367	0.036743217	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					18.855	18.855	4	1.6898E-07	12278	DP1145_6	174.24	164.17			45987000	1027	438	963	1697	2437;2438	2438		2	9606
HNDDEQYAWESSAGGSFTVR	Unmodified	2254.9516	0.95155284	136;132	P07900;Q14568;P08238	HSP90AA1;HSP90AA2P;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta	no	no	0	0	0	2	0		1				18.497	18.497	3	0.03219	14263	DP1145_7	53.254	46.46			71997000	1028	132;136	964	1698	2439;2440	2439		2	9606
HNFCFMEMNTR	2 Oxidation (M)	1517.585	0.58498853	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	2	0	2.2	0.748	1	2	2			15.313	15.313	2;3	0.0026944	8516	DP1145_8	99.688	96.709			355140000	1029	639	965	1699;1700;1701;1702;1703	2441;2442;2443;2444;2445	2445	539;540	4	9606
HNFCFMEMNTR	Oxidation (M)	1501.5901	0.59007391	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.67	0.471		1	2			16.617	16.617	2;3	0.0064705	10539	DP1145_8	89.679	77.619			341410000	1030	639	965	1704;1705;1706	2446;2447;2448	2448	539;540	3	9606
HPAKPDPSGECNPDLR	Unmodified	1788.8213	0.82133071	503	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	3.5	0.5			1	1		13.526	13.526	3	0.0036453	5031	DP1145_9	137.73	123.74			14073000	1031	503	966	1707;1708	2449;2450;2451;2452	2451		4	9606
HPELADKNVPNLHVMK	Oxidation (M)	1856.9567	0.95670198	283	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	1	1	5	0					1	15.045	15.045	4	0.022853	6883	DP1145_10	64.842	47.139			26882000	1032	283	967	1709	2453	2453	266	0	9606
HPELNISEEGITK	Unmodified	1465.7413	0.7412727	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				16.519	16.519	2	3.5126E-17	10847	DP1145_7	152.64	99.515			53920000	1033	184	968	1710	2454;2455	2454		2	9606
HPEVYHHLGVVPPR	Unmodified	1635.8634	0.86339394	50	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				14.928	14.928	4	0.023224	8496	DP1145_7	64.945	34.216			41427000	1034	50	969	1711	2456	2456		0	9606
HPGSFDVVHVK	Unmodified	1220.6302	0.63020611	367	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	yes	no	0	0	0	4	0				2		14.982	14.982	3	5.0885E-49	7022	DP1145_9	152.07	116.89			0	1035	367	970	1712;1713	2457;2458	2457		2	9606
HPHDIIDDINSGAVECPAS	Unmodified	2045.9113	0.91126793	228	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	18.448	18.448	3	1.4546000000000002E-63	12261	DP1145_10	184.87	167.63			204950000	1036	228	971	1714	2459	2459		1	9606
HPSKPDPSGECNPDLR	Unmodified	1804.8162	0.81624534	430	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	1	3.33	0.471			2	1		13.462	13.462	3;4	0.00045602	5016	DP1145_9	146.27	126.45			22141000	1037	430	972	1715;1716;1717	2460;2461;2462	2462		2	9606
HPSLPLLELQEIMTSVAGR	Oxidation (M)	2106.1143	0.11432484	41	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.286	21.286	3	0.0036458	15929	DP1145_6	78.78	62.287			5368400	1038	41	973	1718	2463	2463	35	1	9606
HPYFYAPELLYYANK	Unmodified	1887.9196	0.91957142	10	CON__P02769			yes	yes	0	0	0	3	0			1			20.46	20.46	2	7.1766E-37	16383	DP1145_8	178.54	142.22		+	7330600	1039	10	974	1719	2464	2464		0	
HQEGEIFDTEKEKYEITEQR	Unmodified	2508.1769	0.17686133	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	2	4	0				2		16.623	16.623	3;4	9.5628E-13	9541	DP1145_9	138.97	128.91			145350000	1040	419	975	1720;1721	2465;2466;2467	2465		3	9606
HQGLPQEVLNENLLR	Unmodified	1758.9377	0.9376811	7	CON__P02662			yes	yes	0	0	0	4	0				2		18.723	18.723	2;3	0.00014426	13095	DP1145_9	130.56	89.399		+	102510000	1041	7	976	1722;1723	2468;2469	2469		2	
HQSFVLVGETGSGK	Unmodified	1444.731	0.73104237	52	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	2	0		1				16.162	16.162	3	0.022584	10413	DP1145_7	59.709	33.991			0	1042	52	977	1724	2470	2470		1	9606
HRDTGILDSIGR	Unmodified	1338.7004	0.70041094	107	P02686	MBP	Myelin basic protein	yes	yes	0	0	1	1	0	1					16.176	16.176	3	0.01611	7990	DP1145_6	86.262	50.262			35725000	1043	107	978	1725	2471	2471		1	9606
HSCSPMGDGDPEAMEESPR	2 Oxidation (M)	2119.7881	0.78811761	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	2	0	2.5	0.5		1	1			13.721	13.721	3	0.0024095	6888	DP1145_7	104.16	91.181			6695200	1044	735	979	1726;1727	2472;2473;2474	2472	612;613	3	9606
HSGNITFDEIVNIAR	Unmodified	1684.8533	0.85328277	228	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					2	19.833	19.833	2;3	0.0010761	14529	DP1145_10	81.992	59.001			192800000	1045	228	980	1728;1729	2475;2476;2477	2476		3	9606
HSGPNSADSANDGFVR	Unmodified	1629.7132	0.71316047	310	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3.5	0.5			1	1		14.353	14.353	3	5.9258E-19	6966	DP1145_8	139	117.95			69173000	1046	310	981	1730;1731	2478;2479	2478		0	9606
HSQFIGYPITLFVEK	Unmodified	1777.9403	0.94030686	132	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	yes	no	0	0	0	2	0		1				20.863	20.863	2	5.8733E-11	17803	DP1145_7	139.19	106.86			9068400	1047	132	982	1732	2480	2480		1	9606
HSQFLGYPITLYLEK	Unmodified	1807.9509	0.95087155	521	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	0	2	0		2				20.556	20.556	2;3	5.908299999999999E-46	17233	DP1145_7	204.18	0			43732000	1048	521	983	1733;1734	2481;2482	2482		2	9606
HSSGIVADLSEQSLK	Unmodified	1569.7999	0.79985021	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		17.422	17.422	2	0.015128	11055	DP1145_9	78.908	45.85			116380000	1049	497	984	1735	2483	2483		1	9606
HSTIYPSPEELEAVQNMVSTVECALK	Oxidation (M)	2947.3943	0.39432403	641	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	1	0	2	0		1				21.846	21.846	3	2.5451E-05	19109	DP1145_7	80.453	63.987			9030600	1050	641	985	1736	2484	2484	552	1	9606
HTFSGVASVESSSGEAFHVGK	Unmodified	2118.997	0.99704647	14	CON__P12763			yes	yes	0	0	0	1	0	1					17.077	17.077	3	1.1736E-104	9406	DP1145_6	201.22	157.27		+	0	1051	14	986	1737	2485	2485		1	
HTGPNSPDTANDGFVR	Unmodified	1683.7601	0.76011066	232	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	4	1			1		1	14.881	14.881	2	9.5715E-18	7791	DP1145_8	153.49	125.29			40741000	1052	232	987	1738;1739	2486;2487	2487		2	9606
HTPLVEFEEEESDKR	Unmodified	1843.8588	0.85882166	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.6	1.02	1	1	2	1		16.651	16.651	2;3	0	11246	DP1145_7	267.77	236.68			1763499999.9999998	1053	639	988	1740;1741;1742;1743;1744	2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499	2493		11	9606
HTPLVEFEEEESDKRESE	Unmodified	2188.976	0.97603626	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	2	2.8	1.33	1	1	2		1	16.907	16.907	2;3	2.5744E-175	9094	DP1145_6	300.07	277.53			2070799999.9999998	1054	639	989	1745;1746;1747;1748;1749	2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512	2503		13	9606
HTVDDGLDIR	Unmodified	1139.5571	0.55710075	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				15.64	15.64	2	5.2171E-26	9579	DP1145_7	169.65	115.45			117480000	1055	566	990	1750	2513	2513		1	9606
HVDYVADQIVTK	Unmodified	1386.7143	0.71432967	157	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1.5	0.5	1	1				16.096	16.096	2	9.2583E-12	10325	DP1145_7	145.23	100.59			41864000	1056	157	991	1751;1752	2514;2515;2516	2515		3	9606
HVEVQVFGDHHGNAVYLFER	Unmodified	2352.14	0.13996274	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.2	0.748		1	2	2		18.318	18.318	3;4	4.5315E-20	13328	DP1145_8	152.86	152.86			1632199999.9999998	1057	639	992	1753;1754;1755;1756;1757	2517;2518;2519;2520;2521;2522;2523;2524;2525	2522		9	9606
HVINFDLPSDIEEYVHR	Unmodified	2082.0171	0.017053633	39	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	3	0			1			20.474	20.474	3	0.010351	16342	DP1145_8	74.793	57.505			25237000	1058	39	993	1758	2526	2526		1	9606
HVLHVQLNRPNK	Unmodified	1453.8266	0.82661451	437	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	1	4	0				1		14.077	14.077	3	1.311E-07	5745	DP1145_9	163.16	131.17			11068000	1059	437	994	1759	2527	2527		1	9606
HVVQSISTQQEKETIAK	Unmodified	1925.0218	0.02180466	209	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	1	5	0					1	14.413	14.413	3	0.00028106	6064	DP1145_10	122.96	102.87			26664000	1060	209	995	1760	2528	2528		1	9606
HWGGNVLGPK	Unmodified	1063.5563	0.55631289	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	2.5	1.5	1			1		15.655	15.655	2	3.612E-07	8117	DP1145_9	141.39	119.26			286830000	1061	366	996	1761;1762	2529;2530;2531;2532;2533	2532		5	9606
HWPFMVVNDAGRPK	Oxidation (M)	1668.8195	0.81948022	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			1			17.023	17.023	3	0.00088788	11138	DP1145_8	115.34	87.884			300530000	1062	154	997	1763	2534;2535	2534	148	2	9606
HWPFMVVNDAGRPK	Unmodified	1652.8246	0.8245656	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			17.823	17.823	3	3.4311E-07	12437	DP1145_8	130.15	98.378			118020000	1063	154	997	1764	2536	2536		1	9606
HWPFQVINDGDKPK	Unmodified	1679.842	0.8419898	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3.33	0.471			2	1		17.523	17.523	2;3	2.6888E-86	11959	DP1145_8	199.8	171.22			1470699999.9999998	1064	148	998	1765;1766;1767	2537;2538;2539;2540;2541;2542;2543	2541		7	9606
HYFIEVNSR	Unmodified	1163.5724	0.57235688	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.225	16.225	2	1.799E-34	8030	DP1145_6	176.09	115.33			1795499999.9999998	1065	158	999	1768;1769;1770;1771	2544;2545;2546;2547;2548	2544		5	9606
HYPVFENPK	Unmodified	1129.5556	0.55564418	326	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	2	0		1				15.397	15.397	2	0.0023775	9135	DP1145_7	105.14	72.243			31517000	1066	326	1000	1772	2549;2550;2551	2549		3	9606
IAAGEKIPLSQEEITLQGHAFEAR	Unmodified	2607.3657	0.36566515	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2	0.816	1	1	1			18.447	18.447	4	3.1443E-10	13451	DP1145_8	126.9	109.87			433920000	1067	639	1001	1773;1774;1775	2552;2553;2554;2555	2554		4	9606
IAEEFEVELER	Unmodified	1362.6667	0.66671078	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				19.196	19.196	2	0.0033166	15280	DP1145_7	107.79	77.224			285060000	1068	158	1002	1776	2556	2556		1	9606
IAFIMDESNVLDSGFLER	Oxidation (M)	2070.9932	0.99320665	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	0	1	0	1					22.033	22.033	2	8.8644E-78	17020	DP1145_6	194.86	160.1			4217200	1069	466	1003	1777	2557;2558	2557	436	2	9606
IAGYVTHLMK	Oxidation (M)	1147.606	0.6059652	138	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	1	0	5	0					1	15.051	15.051	2	0.0015956	7035	DP1145_10	101.25	53.293			59739000	1070	138	1004	1778	2559;2560	2560	135	2	9606
IAIYELLFK	Unmodified	1108.6532	0.65323296	283	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	5	0					2	22.553	22.553	1;2	0.0010212	18205	DP1145_10	132.08	113.64			68467000	1071	283	1005	1779;1780	2561;2562;2563	2562		3	9606
IALTDNALIAR	Unmodified	1169.6768	0.67682195	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		18.523	18.523	2	1.769E-152	12654	DP1145_9	233.57	129.2			661900000	1072	191	1006	1781	2564;2565	2564		2	9606
IAPYSVEIK	Unmodified	1018.5699	0.56989727	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.153	17.153	2	3.1616E-06	9472	DP1145_6	141.52	83.707			66448000	1073	401	1007	1782	2566	2566		1	9606
IAPYVAHNFSK	Unmodified	1245.6506	0.6506072	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	1.1	2	2		1		15.412	15.412	2;3	4.6282E-13	9280	DP1145_7	152.11	112.47			3760999999.9999995	1074	158	1008	1783;1784;1785;1786;1787	2567;2568;2569;2570;2571;2572;2573;2574;2575;2576	2574		10	9606
IAQLEEQLDNETKER	Unmodified	1814.901	0.90102082	243	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	0	1					16.897	16.897	3	0.043804	9120	DP1145_6	91.812	48.122			0	1075	243	1009	1788	2577	2577		1	9606
IAQPGDHVSVTGIFLPILR	Unmodified	2032.1469	0.14694559	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2.5	0.5		1	1			21.381	21.381	3	0.0052373	17673	DP1145_8	65.175	46.104			39248000	1076	236	1010	1789;1790	2578;2579	2579		2	9606
IASSIVAQTAGIPTLPWSGSGLR	Unmodified	2281.243	0.24303082	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	2	2				21.626	21.626	2;3	0	16396	DP1145_6	431.13	391.47			264650000	1077	438	1011	1791;1792;1793;1794	2580;2581;2582;2583;2584	2580		5	9606
IATLASGLEVGK	Unmodified	1157.6656	0.66558856	167	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	0	4	0				1		17.722	17.722	2	2.7895E-11	11613	DP1145_9	142.98	86.172			8928600	1078	167	1012	1795	2585	2585		1	9606
IAVEPVNPSELPK	Unmodified	1391.766	0.76603089	484	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2	0		1				18.099	18.099	2	0.0043278	13417	DP1145_7	95.483	30.829			16791000	1079	484	1013	1796	2586	2586		1	9606
IAVHPDYQGMGYGSR	Oxidation (M)	1665.7569	0.75693954	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	1.5	0.5	1	1				15.412	15.412	3	0.013785	6883	DP1145_6	72.209	49.031			131150000	1080	681	1014	1797;1798	2587;2588	2587	574	1	9606
IAWDDEETR	Unmodified	1133.4989	0.49891717	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			16.908	16.908	2	1.3048E-10	10985	DP1145_8	151.04	128.54			136780000	1081	115	1015	1799;1800	2589;2590;2591	2591		2	9606
IAWDDEETRDGFR	Unmodified	1608.7168	0.71684887	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			17.623	17.623	2	8.3988E-06	12064	DP1145_8	123.96	84.083			457170000	1082	115	1016	1801	2592	2592		0	9606
ICCDLDVLASK	Unmodified	1292.6105	0.61045823	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	4	0				1		18.323	18.323	2	0.010113	12324	DP1145_9	92.239	44.279			64487000	1083	116	1017	1802	2593	2593		0	9606
ICGDIHGQYYDLLR	Unmodified	1721.8195	0.8195398	251	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	no	0	0	0	3.5	0.5			1	1		18.623	18.623	2;3	1.587E-104	12845	DP1145_9	172.33	172.33			4139999999.9999995	1084	251	1018	1803;1804	2594;2595	2595		2	9606
ICHGKPVTQVTWHGR	Unmodified	1774.9049	0.90494118	464	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	1	2	0		1				14.13	14.13	4	0.003132	7514	DP1145_7	73.834	48.81			17306000	1085	464	1019	1805	2596	2596		1	9606
IDDFPNELEK	Unmodified	1218.5768	0.57683314	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	2	0		1				18.048	18.048	2	0.0024244	13281	DP1145_7	101.65	55.256			44826000	1086	714	1020	1806	2597	2597		1	9606
IDEPLEGSEDR	Unmodified	1258.5677	0.56772501	349	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			15.856	15.856	2	1.5243E-78	9244	DP1145_8	200.6	120.37			137080000	1087	349	1021	1807	2598	2598		1	9606
IDLRPVLGEGVPILASFLR	Unmodified	2064.2095	0.20954585	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	2	0		1				24.033	24.033	3	0.029226	22307	DP1145_7	66.702	62.765			9689700	1088	566	1022	1808	2599	2599		1	9606
IDPLALVQAIER	Unmodified	1336.7715	0.77145062	472	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	1	0	1					22.933	22.933	2	0.0087656	18330	DP1145_6	90.05	28.4			1936400	1089	472	1023	1809	2600	2600		1	9606
IDPTVLLGALPLR	Unmodified	1376.8391	0.83913625	601	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	0	0	0	5	0					1	22.983	22.983	2	0.0037849	18847	DP1145_10	99.013	68.401			3708100	1090	601	1024	1810	2601	2601		1	9606
IDTGWLDR	Unmodified	974.48214	0.48214489	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.637	18.637	2	1.0762E-71	14309	DP1145_7	167.24	75.336			1522199999.9999998	1091	438	1025	1811;1812	2602;2603	2603		0	9606
IEDFLER	Unmodified	920.46035	0.46034682	281	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	17.948	17.948	2	8.4799E-07	11435	DP1145_10	143	70.983			436230000	1092	281	1026	1813	2604	2604		1	9606
IEDLEEGQQVIR	Unmodified	1427.7256	0.72562264	462	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1	0	1					17.253	17.253	2	0.0070884	9790	DP1145_6	93.111	43.688			9788000	1093	462	1027	1814	2605	2605		1	9606
IEDVTPIPSDSTRR	Unmodified	1584.8107	0.81074925	359	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	5	0					1	15.866	15.866	3	0.0012988	8249	DP1145_10	117.98	80.727			0	1094	359	1028	1815	2606	2606		1	9606
IEEALMDPGR	Oxidation (M)	1145.5387	0.53867349	475	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	1	0	1	0	1					15.683	15.683	2	0.0044816	7086	DP1145_6	111.06	74.3			3758200	1095	475	1029	1816	2607	2607	450	1	9606
IEEELGDEAR	Unmodified	1159.5357	0.5356966	141	P09104	ENO2	Gamma-enolase	yes	yes	0	0	0	5	0					1	15.459	15.459	2	7.3046E-09	7670	DP1145_10	122.13	20.593			13418000	1096	141	1030	1817	2608	2608		0	9606
IEEVPELPLVVEDK	Unmodified	1607.8658	0.86580451	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			20.525	20.525	2	0.0030243	16479	DP1145_8	107.34	78.636			85947000	1097	250	1031	1818	2609;2610	2610		2	9606
IEEVPELPLVVEDKVEGYK	Unmodified	2184.1566	0.15656681	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			20.425	20.425	3	0.022019	16168	DP1145_8	98.165	69.616			100430000	1098	250	1032	1819	2611	2611		0	9606
IEEVPELPLVVEDKVEGYKK	Unmodified	2312.2515	0.25152982	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	2	2.67	1.25	1		1	1		19.408	19.408	4	0.0036526	13927	DP1145_9	118.52	95.488			156190000	1099	250	1033	1820;1821;1822	2612;2613;2614	2614		2	9606
IEGDMIVCAAYAHELPK	Oxidation (M)	1931.9121	0.91211956	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	0	4	0				1		18.323	18.323	3	0.043071	12461	DP1145_9	50.827	13.65			131130000	1100	278	1034	1823	2615	2615	261	1	9606
IEGDMIVCAAYAHELPK	Unmodified	1915.9172	0.91720493	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		18.923	18.923	3	0.0004158	13266	DP1145_9	114.06	71.356			45314000	1101	278	1034	1824	2616	2616		0	9606
IEGLQNLVNLR	Unmodified	1267.7248	0.72483478	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		20.024	20.024	2	1.021E-28	14870	DP1145_9	171.56	106.85			349180000	1102	497	1035	1825	2617;2618;2619	2617		3	9606
IEISELNR	Unmodified	972.52401	0.52400971	11;18	P04264;CON__P04264;P35908;CON__P35908;CON__P35908v2	KRT1;KRT2	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	2	0.816	1	1	1			16.891	16.891	2	0.00042478	10937	DP1145_8	134.06	9.7136		+	576030000	1103	11;18	1036	1826;1827;1828	2620;2621;2622	2622		3	9606
IELHGKPIEVEHSVPK	Unmodified	1810.9941	0.99413335	32	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	1	3	0			1			15.078	15.078	4	0.0072086	8002	DP1145_8	81.713	50.133			78523000	1104	32	1037	1829	2623	2623		0	9606
IEQLQNHENEDIYK	Unmodified	1771.8377	0.83769228	40	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	3	0			1			15.603	15.603	3	0.026182	8855	DP1145_8	70.622	49.971			11937000	1105	40	1038	1830	2624	2624		0	9606
IETIEVMEDR	Oxidation (M)	1249.586	0.58601761	306	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	4	0				1		16.197	16.197	2	0.017783	9093	DP1145_9	78.334	38.267			31351000	1106	306	1039	1831	2625	2625	275	1	9606
IEVIEIMTDR	Oxidation (M)	1233.6275	0.6274885	143	P09651;Q32P51;A0A2R8Y4L2	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	1	0	4	0				1		18.023	18.023	2	0.00011387	11850	DP1145_9	131.11	74.058			107540000	1107	143	1040	1832	2626	2626	138	1	9606
IFAPNHVVAK	Unmodified	1094.6237	0.62366417	418	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	3.67	1.89	1				2	14.725	14.725	2;3	0.0003174	5852	DP1145_6	107.29	60.228			49868000	1108	418	1041	1833;1834;1835	2627;2628;2629	2629		2	9606
IFCCHGGLSPDLQSMEQIR	Unmodified	2247.0235	0.023477694	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	2.75	1.09	1		2	1		19.031	19.031	2;3	0.00049264	13513	DP1145_9	115.66	94.707			1674499999.9999998	1109	251;352	1042	1836;1837;1838;1839	2630;2631;2632;2633	2633		3	9606
IFCCHGGLSPDLQSMEQIR	Oxidation (M)	2263.0184	0.018392316	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	1	0	3.5	0.5			2	2		17.575	17.575	2;3	1.8824E-09	11087	DP1145_9	137.52	119.07			782810000	1110	251;352	1042	1840;1841;1842;1843	2634;2635;2636;2637;2638	2636	231	5	9606
IFDEILVNAADNK	Unmodified	1460.7511	0.75110911	157	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	yes	no	0	0	0	2	0		1				20.024	20.024	2	1.3906E-05	16261	DP1145_7	124.21	47.264			7703800	1111	157	1043	1844	2639	2639		1	9606
IFGYPVGIVGNNGVLFSESAK	Unmodified	2167.1314	0.13135511	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		22.005	22.005	2;3	8.0717E-137	17705	DP1145_9	233.52	196.85			885420000	1112	700	1044	1845;1846;1847;1848	2640;2641;2642;2643;2644;2645;2646;2647	2647		8	9606
IFGYPVGIVGNNGVLFSESAKK	Unmodified	2295.2263	0.22631813	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			20.626	20.626	3	0.00289	16509	DP1145_8	97.384	72.474			72168000	1113	700	1045	1849	2648	2648		1	9606
IFVGGLSPDTPEEK	Unmodified	1487.7508	0.75077476	463	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	4	0				1		18.123	18.123	2	0.037491	12181	DP1145_9	70.942	28.606			41333000	1114	463	1046	1850	2649	2649		1	9606
IGDLQAFQGHGAGNLAGLK	Unmodified	1865.9748	0.97479489	135	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0		1				18.398	18.398	3	1.9730999999999998E-19	13933	DP1145_7	149.3	108.75			139840000	1115	135	1047	1851	2650	2650		0	9606
IGEGTYGVVYK	Unmodified	1184.6077	0.60773933	122;211	P06493;P24941;Q00526	CDK1;CDK2;CDK3	Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	no	no	0	0	0	4	0				1		17.022	17.022	2	0.031131	10423	DP1145_9	74.165	21.675			60065000	1116	122;211	1048	1852	2651	2651		1	9606
IGGIGTVPVGR	Unmodified	1024.6029	0.60292873	391	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3	1.41	1	1	1	1	1	16.851	16.851	2	9.2042E-09	10967	DP1145_8	145.16	72.366			1514199999.9999998	1117	391	1049	1853;1854;1855;1856;1857	2652;2653;2654;2655;2656;2657	2656		5	9606
IGGRQVEETYFGDVPVGSK	Unmodified	2037.0167	0.016719282	796				yes	yes	0	0	1	1	0	1					20.732	20.732	3	0.012248	14968	DP1145_6	58.712	7.2456	+		56246000	1118	796	1050	1858	2658	2658		1	9606
IGGVQQDTILAEGLHFR	Unmodified	1852.9795	0.97954591	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		19.623	19.623	3	6.3194E-75	14291	DP1145_9	196.97	162.65			365400000	1119	646	1051	1859	2659;2660	2659		2	9606
IGHVGMQIEHIIENIVAVTK	Oxidation (M)	2216.1987	0.19872317	85	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	1	0	3	0			1			23.016	23.016	3	0.00075589	20116	DP1145_8	105.99	85.244			6526700	1120	85	1052	1860	2661	2661	69	1	9606
IGKDEMLQMIR	2 Oxidation (M)	1364.6792	0.67920649	63	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	2	1	1	0	1					14.846	14.846	3	0.024464	5926	DP1145_6	61.435	23.754			5258000	1121	63	1053	1861	2662	2662	50;51	0	9606
IGLAEEIR	Unmodified	899.50763	0.50763136	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	1	1		1			17.088	17.088	2	1.2687E-32	9527	DP1145_6	173.59	20.444			492260000	1122	438	1054	1862;1863	2663;2664;2665;2666	2664		3	9606
IGPLGLSPK	Unmodified	880.5382	0.53820321	228	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	17.247	17.247	2	0.0034675	10439	DP1145_10	110.12	57.821			654350000	1123	228	1055	1864	2667;2668;2669;2670	2669		4	9606
IGQGYLIK	Unmodified	890.52255	0.52255314	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	4	0				1		16.723	16.723	2	0.0024816	9783	DP1145_9	123.99	40.702			140460000	1124	257	1056	1865	2671	2671		1	9606
IGQTKPVVVYR	Unmodified	1258.7398	0.73975656	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	3	1.41		2			1	14.718	14.718	2;3	7.9838E-12	8263	DP1145_7	148.69	116.37			284410000	1125	714	1057	1866;1867;1868	2672;2673;2674	2674		3	9606
IGSFGPGEDLLYLR	Unmodified	1535.7984	0.79839365	41	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.296	21.296	2	3.1671E-17	15961	DP1145_6	149.23	112.04			27292000	1126	41	1058	1869	2675;2676	2675		2	9606
IGSFGPQEDLLFLR	Unmodified	1590.8406	0.84059282	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				21.948	21.948	2	2.3467E-166	19180	DP1145_7	247.96	225.63			1608999999.9999998	1127	438	1059	1870;1871;1872	2677;2678;2679;2680;2681;2682;2683;2684;2685;2686	2684		10	9606
IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK	Oxidation (M)	3582.6588	0.65881199	391	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	0	3	0			1			23.707	23.707	3	0.0040093	21085	DP1145_8	44.443	32.181			4129000	1128	391	1060	1873	2687	2687	329	1	9606
IGYPVMIK	Oxidation (M)	935.51502	0.51502492	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2	0		1				17.099	17.099	2	0.030417	12083	DP1145_7	76.847	76.847			162350000	1129	639	1061	1874	2688	2688	541	1	9606
IHFPLATYAPVISAEK	Unmodified	1755.956	0.95595693	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	0	3.14	1.25	1	1	2	2	1	19.735	19.735	2;3	1.0161E-06	14735	DP1145_8	129.74	75.737			2860700000	1130	393;550;394	1062	1875;1876;1877;1878;1879;1880;1881	2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701;2702;2703	2696		15	9606
IHNANPELTDGQIQAMLR	Oxidation (M)	2036.0109	0.010922397	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	2	1.22	2	1		1		17.058	17.058	2;3	9.2989E-06	9278	DP1145_6	118.73	96.956			782900000	1131	438	1063	1882;1883;1884;1885	2704;2705;2706;2707	2705	392	4	9606
IHNANPELTDGQIQAMLR	Unmodified	2020.016	0.016007775	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.655	18.655	2;3	0	11929	DP1145_6	268.18	239.06			464280000	1132	438	1063	1886;1887	2708;2709;2710	2710		2	9606
IHPTSVISGYR	Unmodified	1228.6564	0.65642086	188	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			15.756	15.756	3	1.2508E-05	9032	DP1145_8	132.32	108.04			48335000	1133	188	1064	1888	2711	2711		1	9606
IIANALSSEPACLAEIEEDKAR	Unmodified	2399.2002	0.20023931	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					19.255	19.255	3	3.2773E-06	12891	DP1145_6	123.43	105.37			41226000	1134	401	1065	1889	2712	2712		1	9606
IIDFLSALEGFK	Unmodified	1351.7388	0.73875351	311	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	1.5	0.5	1	1				23.981	23.981	2	9.9448E-06	22225	DP1145_7	127.76	84.682			23383000	1135	311	1066	1890;1891	2713;2714;2715;2716	2716		4	9606
IIDPLPPIDHSEIDYPPFEK	Unmodified	2334.1784	0.17836488	570	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				20.582	20.582	3	0.00095309	17306	DP1145_7	85.808	56.365			16857000	1136	570	1067	1892	2717	2717		1	9606
IIDVVYNASNNELVR	Unmodified	1717.8999	0.89989861	355	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.134	19.134	2	8.987E-46	13344	DP1145_10	173.76	131.42			91501000	1137	355	1068	1893	2718	2718		1	9606
IIEDQQESLNK	Unmodified	1315.662	0.66195975	120	P05455	SSB	Lupus La protein	yes	yes	0	0	0	3	0			1			14.881	14.881	2	2.6643E-79	7834	DP1145_8	205.59	116.77			18453000	1138	120	1069	1894	2719	2719		1	9606
IIEEAPAPGIK	Unmodified	1136.6441	0.64412484	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.098	16.098	2	7.477E-13	10267	DP1145_7	150.36	125.84			7648799999.999999	1139	639	1070	1895;1896;1897;1898;1899	2720;2721;2722;2723;2724;2725;2726;2727;2728	2724		9	9606
IIEEAPATIATPAVFEHMEQCAVK	Oxidation (M)	2670.3033	0.30332417	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.855	18.855	3	0.00010285	12302	DP1145_6	79.416	65.476			146440000	1140	438	1071	1900	2729;2730	2729	393	2	9606
IIEEAPATIATPAVFEHMEQCAVK	Unmodified	2654.3084	0.30840955	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.255	20.255	3	2.5337E-08	14364	DP1145_6	136.67	119.92			194700000	1141	438	1071	1901	2731;2732;2733	2732		3	9606
IIEFVPTK	Unmodified	945.55352	0.55351892	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				17.826	17.826	2	2.7022E-23	10711	DP1145_6	166.78	53.699			2198800000	1142	438	1072	1902;1903	2734;2735	2734		1	9606
IIEVGDTPK	Unmodified	970.53351	0.53351176	347	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	0	1	0	1					15.632	15.632	2	0.031097	7241	DP1145_6	82.452	36.772			18199000	1143	347	1073	1904	2736	2736		1	9606
IIIEDLLEATR	Unmodified	1284.7289	0.7289171	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					21.794	21.794	2	9.5763E-20	16650	DP1145_6	192.91	103.15			30173000	1144	608	1074	1905	2737;2738	2737		2	9606
IIIPEIQK	Unmodified	952.59572	0.59571809	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				18.099	18.099	2	0.0071763	13531	DP1145_7	102.77	25.999			41258000	1145	322	1075	1906	2739	2739		1	9606
IILDLISESPIK	Unmodified	1339.7963	0.79626839	349	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3.5	0.5			1	1		21.218	21.218	2	1.4228E-05	17571	DP1145_8	150.61	109.58			76258000	1146	349	1076	1907;1908	2740;2741;2742;2743	2740		4	9606
IINDNATYCR	Unmodified	1238.5714	0.5713706	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			14.978	14.978	2	1.0865E-14	7910	DP1145_8	135.83	96.578			69658000	1147	38	1077	1909	2744	2744		0	9606
IINEPTAAAIAYGLDK	Unmodified	1658.8879	0.88793694	154;153	P11142;P54652;P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	no	no	0	0	0	3	0			1			19.724	19.724	2	3.5588000000000004E-25	15253	DP1145_8	166.62	117.32			488660000	1148	154;153	1078	1910	2745;2746	2745		2	9606
IINEPTAAAIAYGLDKK	Unmodified	1786.9829	0.98289996	154	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	1	3	0			1			18.623	18.623	3	5.0762E-11	13641	DP1145_8	142.4	100.44			574010000	1149	154	1079	1911	2747	2747		1	9606
IINEPTAAAIAYGLDR	Unmodified	1686.8941	0.89408495	148;181	P17066;P0DMV9;P0DMV8	HSPA6;HSPA1B;HSPA1A	Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3.33	0.471			2	1		19.938	19.938	2;3	5.2873999999999994E-126	15726	DP1145_8	219.92	142.25			1574099999.9999998	1150	181;148	1080	1912;1913;1914	2748;2749;2750;2751	2748		4	9606
IINPMGLLVEELK	Unmodified	1467.8371	0.83708734	697	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	4	0				1		23.4	23.4	2	0.013964	19736	DP1145_9	86.344	58.331			1318500	1151	697	1081	1915	2752	2752		1	9606
IIPGFMCQGGDFTHPNGTGDK	Oxidation (M)	2263.999	0.99903708	149	P0DN37			yes	yes	0	1	0	1	0	1					20.055	20.055	3	0.031466	14230	DP1145_6	47.204	9.2787			25423000	1152	149	1082	1916	2753	2753	145	1	9606
IIPGFMCQGGDFTR	Unmodified	1597.7381	0.73811836	384	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	5	0					1	19.733	19.733	2	0.0046557	14264	DP1145_10	103.31	79.934			13935000	1153	384	1083	1917	2754	2754		1	9606
IIPPQPMEGLGFLDALNSAPVPGIK	Oxidation (M)	2589.3876	0.38764615	638	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	1	0	2	0		1				22.691	22.691	3	2.2108E-05	20373	DP1145_7	93.388	78.058			28905000	1154	638	1084	1918	2755	2755	536	1	9606
IIPPQPMEGLGFLDALNSAPVPGIK	Unmodified	2573.3927	0.39273153	638	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		1				23.549	23.549	2	0.039399	21642	DP1145_7	48.729	32.844			3962100	1155	638	1084	1919	2756	2756		1	9606
IIQLLDDYPK	Unmodified	1216.6703	0.67033959	119	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		19.523	19.523	2	0.002159	14040	DP1145_9	123.21	58.451			470870000	1156	119	1085	1920	2757;2758;2759	2757		3	9606
IIQQAGQVWFPDSAFK	Unmodified	1833.9414	0.94136949	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.732	20.732	2	5.9312E-126	15089	DP1145_6	219.43	182.76			1121100000	1157	438	1086	1921	2760;2761;2762	2761		3	9606
IISDNLTYCK	Unmodified	1225.6013	0.60127375	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			16.64	16.64	2	0.0021664	10610	DP1145_8	104.01	43.042			40189000	1158	768	1087	1922	2763	2763		1	9606
IITHPNFNGNTLDNDIMLIK	Unmodified	2282.1729	0.17290235	6	CON__P00761			yes	yes	0	0	0	3	1.22	1	2	2	2	1	19.991	19.991	2;3	3.122E-112	14840	DP1145_9	171.68	129.04		+	7979699999.999999	1159	6	1088	1923;1924;1925;1926;1927;1928;1929;1930	2764;2765;2766;2767;2768;2769;2770;2771;2772;2773;2774;2775;2776;2777;2778	2777		15	
IITHPNFNGNTLDNDIMLIK	Oxidation (M)	2298.1678	0.16781697	6	CON__P00761			yes	yes	0	1	0	3	1.49	2	2	1	2	2	19.562	19.562	2;3	7.4479E-82	13962	DP1145_10	186.6	132.23		+	7027099999.999999	1160	6	1088	1931;1932;1933;1934;1935;1936;1937;1938;1939	2779;2780;2781;2782;2783;2784;2785;2786;2787;2788;2789;2790;2791;2792;2793	2779	2	14	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Oxidation (M)	3324.7136	0.71362475	6	CON__P00761			yes	yes	0	1	1	3	1.63	1		1		1	20.493	20.493	4	3.6886E-09	16405	DP1145_8	99.396	76.15		+	124050000	1161	6	1089	1940;1941;1942	2794;2795;2796	2796	2	3	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	Unmodified	3308.7187	0.71871013	6	CON__P00761			yes	yes	0	0	1	3.6	1.02		1	1	2	1	20.822	20.822	3;4	2.6418E-10	17554	DP1145_7	110.07	91.205		+	491270000	1162	6	1089	1943;1944;1945;1946;1947	2797;2798;2799;2800;2801;2802	2798		3	
IITITGTQDQIQNAQYLLQNSVK	Unmodified	2588.381	0.38098087	349	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			2			21.524	21.524	2;3	5.8256E-07	18028	DP1145_8	153.23	118.13			77678000	1163	349	1090	1948;1949	2803;2804	2804		2	9606
IITLAGPTNAIFK	Unmodified	1357.7969	0.79693709	491	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		20.024	20.024	2	0.0036839	14982	DP1145_9	99.53	60.226			92299000	1164	491	1091	1950	2805	2805		1	9606
IIVDELKQEVISTSSK	Unmodified	1787.988	0.98804492	388	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	1	4	0				1		18.623	18.623	2	3.5426E-45	12876	DP1145_9	176.25	144.9			19108000	1165	388	1092	1951	2806	2806		1	9606
IKFEMEQNLR	Oxidation (M)	1322.6653	0.66527099	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	1	3	0			1			15.377	15.377	3	0.015534	8641	DP1145_8	89.679	48.562		+	80511000	1166	17	1093	1952	2807	2807	12	1	9606
IKGEHPGLSIGDVAK	Unmodified	1519.8358	0.83584179	142	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	1	4.5	0.5				1	1	15.413	15.413	3	0.010199	7485	DP1145_10	93.909	51.913			167160000	1167	142	1094	1953;1954	2808;2809	2808		2	9606
IKSEHPGLSIGDTAK	Unmodified	1551.8257	0.82567103	217	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	1	4	0				1		14.456	14.456	3	0.012271	6265	DP1145_9	86.548	42.787			12007000	1168	217	1095	1955	2810	2810		1	9606
IKYPENFFLLR	Unmodified	1438.7973	0.79727144	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.2	0.748		1	2	2		19.932	19.932	2;3	2.1694E-78	14711	DP1145_9	190.57	175.88			4216999999.9999995	1169	251;352	1096	1956;1957;1958;1959;1960	2811;2812;2813;2814;2815;2816;2817;2818	2815		7	9606
ILAHNNFVGR	Unmodified	1139.62	0.61997578	32;729	Q9NZI8;O00425	IGF2BP1;IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3	no	no	0	0	0	3	0			1			14.997	14.997	2	0.0041471	7914	DP1145_8	110.31	62.441			0	1170	729;32	1097	1961	2819	2819		1	9606
ILAIGLINEALDEGDAQK	Unmodified	1882.0048	0.004757612	284	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	2	0		1				22.416	22.416	2	0.010091	19960	DP1145_7	119.01	89.326			6147400	1171	284	1098	1962	2820	2820		1	9606
ILDDDTIITTLENLKR	Unmodified	1872.0204	0.020407676	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	1	0	1					21.832	21.832	3	0.016009	16713	DP1145_6	99.566	83.974			7009600	1172	466	1099	1963	2821	2821		1	9606
ILDPEGLALGAVIASSK	Unmodified	1652.9349	0.93488713	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2.25	1.09	1	2		1		22.011	22.011	2;3	1.3293E-25	16907	DP1145_6	192.14	180.61			217910000	1173	575	1100	1964;1965;1966;1967	2822;2823;2824;2825;2826;2827;2828;2829	2822		7	9606
ILDSVGIEADDDRLNK	Unmodified	1771.8952	0.89520716	118	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	1	5	0					1	17.447	17.447	3	0.002586	10816	DP1145_10	128.95	92.908			196910000	1174	118	1101	1968	2830	2830		1	9606
ILDVMYSR	Unmodified	995.511	0.51100218	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.954	17.954	2	0.0025737	10919	DP1145_6	116.9	80.718			8058000	1175	401	1102	1969	2831	2831		1	9606
ILELSGSSSEDSEK	Unmodified	1479.694	0.69404774	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.408	16.408	2	0.0053916	8619	DP1145_6	96.229	70.291			30067000	1176	401	1103	1970	2832	2832		1	9606
ILEPGLNILIPVLDR	Unmodified	1674.008	0.0079924964	751	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	4	0				1		23.293	23.293	2	0.00025896	19464	DP1145_9	121.02	112.51			17874000	1177	751	1104	1971	2833;2834;2835	2833		3	9606
ILGADTSVDLEETGR	Unmodified	1574.7788	0.77878042	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.318	18.318	2	0.031993	13524	DP1145_8	71.268	34.74			294430000	1178	215	1105	1972	2836	2836		1	9606
ILGATIENSR	Unmodified	1072.5877	0.58767259	13	CON__P08727;P08727	KRT19	Keratin, type I cytoskeletal 19	yes	no	0	0	0	4	0				1		16.096	16.096	2	0.0024902	8778	DP1145_9	122.19	53.805		+	50200000	1179	13	1106	1973	2837	2837		1	9606
ILGLLDAYLK	Unmodified	1117.6747	0.67469669	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			22.018	22.018	2	0.026699	18695	DP1145_8	80.165	28.82			88681000	1180	218	1107	1974	2838	2838		1	9606
ILIGNSPPLGR	Unmodified	1135.6713	0.67134264	799				yes	yes	0	0	0	5	0					1	15.114	15.114	2	0.0077281	7152	DP1145_10	93.143	2.7734	+		27887000	1181	799	1108	1975	2839	2839		1	9606
ILILGLDGAGK	Unmodified	1068.6543	0.6542956	261	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	5	0					1	19.733	19.733	2	0.0020426	14404	DP1145_10	104.01	62.361			16125000	1182	261	1109	1976	2840	2840		1	9606
ILITTVPPNLR	Unmodified	1235.7602	0.76015765	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		18.723	18.723	2	0.020786	12936	DP1145_9	78.934	33.798			123510000	1183	435	1110	1977	2841	2841		1	9606
ILLAELEQLK	Unmodified	1168.7067	0.7067251	137	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			20.525	20.525	2	1.225E-60	16406	DP1145_8	195.06	99.248			230960000	1184	137	1111	1978	2842;2843	2842		2	9606
ILMVGLDAAGK	Oxidation (M)	1102.6056	0.60563084	190	P18085;P84085;P84077;P61204	ARF4;ARF5;ARF1;ARF3	ADP-ribosylation factor 4;ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3	yes	no	0	1	0	5	0					1	17.547	17.547	2	0.0097816	10932	DP1145_10	90.906	39.051			74624000	1185	190	1112	1979	2844	2844	189	0	9606
ILNVPQELYEK	Unmodified	1344.7289	0.7289171	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.67	1.25	1		1	1		18.788	18.788	2	8.5456E-29	12074	DP1145_6	192.64	157.13			1154400000	1186	438	1113	1980;1981;1982	2845;2846;2847;2848;2849	2845		4	9606
ILPEIIPILEEGLR	Unmodified	1603.9549	0.95489429	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					23.627	23.627	2	0.0008554	19312	DP1145_6	113.63	65.691			4084200	1187	608	1114	1983	2850	2850		1	9606
ILPTLEAVAALGNK	Unmodified	1408.829	0.8289655	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		20.717	20.717	2	1.0909999999999999E-72	15891	DP1145_9	192.64	130.95			185430000	1188	435	1115	1984	2851;2852;2853	2852		3	9606
ILQNEPLPER	Unmodified	1207.6561	0.65608651	100	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3	0			1			16.13	16.13	2	0.0013123	9744	DP1145_8	125.82	68.64			68718000	1189	100	1116	1985	2854	2854		1	9606
ILSGGEIIR	Unmodified	956.56548	0.56548059	798				yes	yes	0	0	0	1	0	1					18.565	18.565	2	0.0072508	11949	DP1145_6	121.29	3.2815	+		16348000	1190	798	1117	1986	2855	2855		1	9606
ILSNSSLAPSK	Unmodified	1115.6186	0.61863837	516	Q49AG3	ZBED5	Zinc finger BED domain-containing protein 5	yes	yes	0	0	0	4	0				1		16.723	16.723	2	0.0062618	9809	DP1145_9	96.342	18.078			110590000	1191	516	1118	1987	2856	2856		0	9606
ILSTMDSPST	Oxidation (M)	1066.4852	0.48524094	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					15.933	15.933	2	0.0031474	7574	DP1145_6	108.09	82.351			85787000	1192	438	1119	1988	2857;2858	2857	394	2	9606
ILTFDQLALDSPK	Unmodified	1459.7922	0.79224564	424	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	20.691	20.691	2	2.0408999999999997E-43	15621	DP1145_10	174.4	96.135			269750000	1193	424	1120	1989	2859	2859		1	9606
ILVATNLFGR	Unmodified	1102.6499	0.64987892	25	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	no	no	0	0	0	3	0			1			19.824	19.824	2	0.0076633	15423	DP1145_8	112.41	38.436			22391000	1194	25	1121	1990	2860	2860		1	9606
ILVGHALHNDLK	Unmodified	1328.7565	0.75646926	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			2			15.105	15.105	2;3	0.00996	8209	DP1145_8	107.34	10.181			16289000	1195	679	1122	1991;1992	2861;2862	2862		2	9606
ILVVIEPLLIDEDYYAR	Unmodified	2033.1085	0.1084944	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		2				23.459	23.459	2	0.0078494	21487	DP1145_7	108.3	70.335			2555500	1196	80	1123	1993;1994	2863;2864	2864		2	9606
IMDQAITVGAPVIGLNDSGGAR	Oxidation (M)	2170.1052	0.10521671	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			2			19.424	19.424	2;3	4.6238000000000004E-182	14997	DP1145_8	233.47	203.67			342780000	1197	116	1124	1995;1996	2865;2866;2867;2868	2867	100	4	9606
IMEFTTTLLNTSPEGWK	Oxidation (M)	1982.9659	0.96592926	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.732	20.732	2	0.0085299	15240	DP1145_6	80.3	21.519			10913000	1198	401	1125	1997	2869	2869	348	1	9606
IMEGPAFNFLDAPAVR	Oxidation (M)	1762.8712	0.87124102	155	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	1	0	4	0				1		20.873	20.873	2	0.00037334	16026	DP1145_9	120.59	86.718			3652900	1199	155	1126	1998	2870	2870	155	0	9606
IMLPWDPTGK	Oxidation (M)	1172.59	0.58998078	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	4	0				1		20.224	20.224	2	0.002786	15141	DP1145_9	117.81	69.963			116730000	1200	205	1127	1999	2871;2872	2871	205	2	9606
IMLPWDPTGK	Unmodified	1156.5951	0.59506616	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	4	0				1		20.916	20.916	2	0.0041838	16109	DP1145_9	118.5	76.619			74429000	1201	205	1127	2000	2873	2873		1	9606
IMNTFSVMPSPK	2 Oxidation (M)	1382.6574	0.65740842	460;664	Q13885;Q9BVA1;Q9BUF5	TUBB2A;TUBB2B;TUBB6	Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	2	0	5	0					1	16.431	16.431	2	0.043986	9114	DP1145_10	70.412	10.014			0	1202	460;664	1128	2001	2874	2874	433;434	1	9606
IMNTFSVMPSPK	Oxidation (M)	1366.6625	0.6624938	460;664	Q13885;Q9BVA1;Q9BUF5	TUBB2A;TUBB2B;TUBB6	Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	1	0	3	0			1			17.923	17.923	2	0.0013391	12506	DP1145_8	104.22	57.035			28794000	1203	460;664	1128	2002	2875;2876	2875	433;434	2	9606
IMNTFSVVPSPK	Unmodified	1318.6955	0.69550848	395;131;455	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	4	0.816			1	1	1	18.531	18.531	2	6.2994E-24	13190	DP1145_8	162.26	80			1072199999.9999999	1204	131;395;455	1129	2003;2004;2005	2877;2878;2879;2880;2881;2882	2878		6	9606
IMNTFSVVPSPK	Oxidation (M)	1334.6904	0.69042311	395;131;455	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	1	0	3	1.41	1	1	1	1	1	17.678	17.678	2	1.3466E-20	11042	DP1145_10	147.74	86.915			1344100000	1205	131;395;455	1129	2006;2007;2008;2009;2010	2883;2884;2885;2886;2887;2888;2889;2890;2891	2883	121	8	9606
IMNVIGEPIDER	Oxidation (M)	1400.697	0.69696505	123	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	2	1	1		1			17.423	17.423	2	0.0013361	11832	DP1145_8	104.42	26.89			98648000	1206	123	1130	2011;2012	2892;2893	2893	106	2	9606
INEELESQYQQSMDSK	Oxidation (M)	1943.8419	0.84185096	27	O00193	SMAP	Small acidic protein	yes	yes	0	1	0	4.5	0.5				1	1	16.45	16.45	2	1.7574000000000003E-25	9366	DP1145_9	160.18	131.28			45380000	1207	27	1131	2013;2014	2894;2895;2896	2895	19	3	9606
INISEGNCPER	Unmodified	1287.5877	0.58774895	491	Q15366;P57721;Q15365	PCBP2;PCBP3;PCBP1	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1	yes	no	0	0	0	4	0				1		15.197	15.197	2	1.0051000000000001E-27	7415	DP1145_9	166.09	128.58			69498000	1208	491	1132	2015	2897	2897		1	9606
INPYMSSPCHIEMILTEKEQIVPKPEEEVAQK	2 Oxidation (M)	3798.8518	0.85183407	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	2	2	5	0					1	18.863	18.863	4	8.0756E-08	12946	DP1145_10	66.014	39.189			14742000	1209	193	1133	2016	2898	2898	192;193	1	9606
INTQWLLTSGTTEANAWK	Unmodified	2033.0218	0.02180466	23	CON__Streptavidin			yes	yes	0	0	0	4.11	1.37	2	1	2	2	12	23.609	23.609	2;3	0	15454	DP1145_6	297.45	234.59		+	74731000000	1210	23	1134	2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035	2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935;2936;2937;2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951;2952;2953;2954	2943		55	
INTQWLLTSGTTEANAWKSTLVGHDTFTK	Unmodified	3219.62	0.62004194	23	CON__Streptavidin			yes	yes	0	0	1	5	0					1	21.299	21.299	4	0.0003876	16629	DP1145_10	63.893	47.752		+	170410000	1211	23	1135	2036	2955	2955		0	
INVYYNEAAGNK	Unmodified	1354.6517	0.65172941	460	Q13885	TUBB2A	Tubulin beta-2A chain	yes	yes	0	0	0	2	1	1		1			16.303	16.303	2	5.7624999999999995E-80	8118	DP1145_6	196.79	128.41			33871000	1212	460	1136	2037;2038	2956;2957	2956		2	9606
INVYYNEATGGK	Unmodified	1327.6408	0.64083038	395	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	3	0			1			16.64	16.64	2	1.6469000000000002E-69	10552	DP1145_8	192.64	146.67			1369800000	1213	395	1137	2039	2958;2959	2958		2	9606
IPCDSPQSDPVDTPTSTK	Unmodified	1943.8782	0.87823647	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				15.74	15.74	2	5.5038E-08	9924	DP1145_7	146.59	111.84			143250000	1214	276	1138	2040	2960;2961	2960		2	9606
IPDWFLNR	Unmodified	1059.5502	0.55016488	361	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	20.401	20.401	2	1.8272E-57	15327	DP1145_10	195.85	126.67			164170000	1215	361	1139	2041	2962	2962		1	9606
IPGGIIEDSCVLR	Unmodified	1427.7442	0.74424959	291	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	3	0			1			18.924	18.924	2	0.0063285	14147	DP1145_8	96.171	57.367			66128000	1216	291	1140	2042	2963	2963		1	9606
IPGLLSPHPLLQLSYTATDR	Unmodified	2191.2001	0.20010338	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					20.694	20.694	3	0.002088	15082	DP1145_6	121.01	99.075			10149000	1217	290	1141	2043	2964	2964		1	9606
IPLLLTSLSFK	Unmodified	1230.7588	0.75876067	475	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	1					22.097	22.097	2	9.1532E-13	17070	DP1145_6	168.26	168.26			15983000	1218	475	1142	2044	2965;2966	2966		2	9606
IPLLSDLTHQISK	Unmodified	1463.8348	0.83477916	442	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	5	0					1	19.633	19.633	3	0.029547	14087	DP1145_10	67.252	39.39			16899000	1219	442	1143	2045	2967	2967		0	9606
IPLSQEEITLQGHAFEAR	Unmodified	2038.0484	0.048353761	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.14	1.25	1	1	2	2	1	18.646	18.646	2;3	2.0303E-226	13788	DP1145_8	277.31	230.58			3200199999.9999995	1220	639	1144	2046;2047;2048;2049;2050;2051;2052	2968;2969;2970;2971;2972;2973;2974;2975;2976	2973		8	9606
IPVGPETLGR	Unmodified	1037.5869	0.58694431	123	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	3	1.63	1		1		1	16.948	16.948	2	0.0026202	9274	DP1145_6	121.09	51.093			144670000	1221	123	1145	2053;2054;2055	2977;2978;2979;2980;2981;2982	2981		6	9606
IPVQAVWAGWGHASENPK	Unmodified	1945.9799	0.97988027	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					19.055	19.055	3	4.5973E-63	12552	DP1145_6	181.51	163.04			659620000	1222	41;438	1146	2056	2983;2984	2983		2	9606
IPVTIITGYLGAGK	Unmodified	1401.8232	0.82315184	518	Q9BRT8;Q8IUF1;Q5RIA9;Q5JTY5;Q4V339	CBWD1;CBWD2;CBWD5;CBWD3;CBWD6	COBW domain-containing protein 1;COBW domain-containing protein 2;COBW domain-containing protein 5;COBW domain-containing protein 3;COBW domain-containing protein 6	yes	no	0	0	0	4	0				1		20.668	20.668	2	0.0071879	15665	DP1145_9	102.95	86.237			3712900	1223	518	1147	2057	2985	2985		1	9606
IPWFQYPIIYDIR	Unmodified	1722.9134	0.91336383	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4.5	0.5				1	1	23.397	23.397	2	3.0121000000000004E-101	19656	DP1145_9	230.95	196.74			61708000	1224	646	1148	2058;2059	2986;2987;2988	2987		2	9606
IQASTMAFK	Unmodified	995.511	0.51100218	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	5	0					1	16.245	16.245	2	0.00017293	8838	DP1145_10	136.8	60.762			27481000	1225	253	1149	2060	2989;2990	2990		2	9606
IQDKEGIPPDQQR	Unmodified	1522.774	0.77396981	385	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	1	2.38	1.41	3	2	1	1	1	13.937	13.937	2;3	5.0967E-17	4300	DP1145_6	148.89	108.12			105270000	1226	385	1150	2061;2062;2063;2064;2065;2066;2067;2068	2991;2992;2993;2994;2995;2996;2997;2998;2999;3000	2993		8	9606
IQEGVESLAGYADIFLR	Unmodified	1879.968	0.96797818	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.33	0.471			2	1		23.172	23.172	2;3	1.1389E-169	20215	DP1145_8	234.9	194.4			72182000	1227	116	1151	2069;2070;2071	3001;3002;3003;3004;3005	3003		5	9606
IQEILTQVK	Unmodified	1070.6336	0.63356015	32	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			16.74	16.74	2	0.028316	10818	DP1145_8	85.161	0.66303			113240000	1228	32	1152	2072	3006	3006		1	9606
IQEQESSGEEDSDLSPEEREK	Unmodified	2420.0463	0.046300668	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4	0				1		14.996	14.996	3	0.02553	7108	DP1145_9	72.383	53.447			36500000	1229	268	1153	2073	3007	3007		1	9606
IQEVADELQK	Unmodified	1171.6085	0.60846762	190	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	5	0					1	16.039	16.039	2	7.0254E-26	8518	DP1145_10	162.88	89.629			0	1230	190	1154	2074	3008	3008		1	9606
IQLPVVSK	Unmodified	882.55385	0.55385327	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	1.25	1	1		1		17.326	17.326	2	0.0038311	12208	DP1145_7	107.9	47.214			133250000	1231	276	1155	2075;2076;2077	3009;3010;3011	3010		2	9606
IQLSSLIAAFQVTR	Unmodified	1545.8879	0.88787736	264	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	4	0				1		22.981	22.981	2	8.699199999999999E-59	19105	DP1145_9	216.84	144.23			8703800	1232	264	1156	2078	3012;3013	3012		2	9606
IQNPVAFLSSVLPSLPAIPPTNAMGLPR	Oxidation (M)	2915.5943	0.59428488	560	Q86TC9	MYPN	Myopalladin	yes	yes	0	1	0	1	0	1					30.472	30.472	3	0.019357	26570	DP1145_6	54.465	12.526			0	1233	560	1157	2079	3014	3014	488	1	9606
IQSPTEETEIFYHR	Unmodified	1748.837	0.836964	543	Q6P4A7	SFXN4	Sideroflexin-4	yes	yes	0	0	0	1	0	1					17.954	17.954	3	0.0038997	10765	DP1145_6	86.772	64.297			2850800	1234	543	1158	2080	3015	3015		1	9606
IRELTAVVQK	Unmodified	1155.6976	0.69755739	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	4	0				1		15.1	15.1	2	0.031603	7359	DP1145_9	85.731	13.246			89108000	1235	205	1159	2081	3016	3016		0	9606
IRGPEESQPPQLYAADEEEAPGTRDPTR	Unmodified	3108.4748	0.47483427	527	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	2	4	0				1		16.723	16.723	4	0.0012918	9583	DP1145_9	58.938	35.372			80533000	1236	527	1160	2082	3017	3017		1	9606
IRLENEIQTYR	Unmodified	1433.7627	0.76267685	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.33	0.471		2	1			16.829	16.829	2;3	3.8236E-110	10761	DP1145_8	217.02	133.37		+	214440000	1237	15	1161	2083;2084;2085	3018;3019;3020	3020		2	9606
IRLESEEEGVPSTAIR	Unmodified	1784.9268	0.92684164	122	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	4	0				1		16.779	16.779	3	0.025695	9806	DP1145_9	72.819	41.858			31040000	1238	122	1162	2086	3021	3021		1	9606
ISAVSVAER	Unmodified	930.51345	0.51344502	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					15.228	15.228	2	3.8601E-19	6541	DP1145_6	136.75	37.756			16621000	1239	427	1163	2087	3022	3022		0	9606
ISDIQSQLEK	Unmodified	1159.6085	0.60846762	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	5	0					1	16.403	16.403	2	1.2332E-07	9189	DP1145_10	144.65	29.756			27402000	1240	719	1164	2088	3023;3024	3023		2	9606
ISEQFTAMFR	Unmodified	1228.591	0.59104341	395;131;460;455	P07437;P68371;P04350;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	4	1			1		1	19.633	19.633	2	1.0385E-48	15304	DP1145_8	185.55	118.06			12164000	1241	131;395;460;455	1165	2089;2090	3025;3026	3026		2	9606
ISEQFTAMFR	Oxidation (M)	1244.586	0.58595803	395;131;460;455	P07437;P68371;P04350;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	1	0	3.5	0.5			1	1		18.023	18.023	2	3.7963E-18	12755	DP1145_8	160.82	112.95			753050000	1242	131;395;460;455	1165	2091;2092	3027;3028;3029;3030;3031	3027	122	5	9606
ISGLIYEETR	Unmodified	1179.6136	0.61355299	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	3	2	1				1	17.651	17.651	2	5.1367E-126	11067	DP1145_10	226.47	169.75			1945699999.9999998	1243	371	1166	2093;2094	3032;3033;3034	3032		3	9606
ISGSILNELIGLVR	Unmodified	1482.877	0.87697832	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0.816	1	1	1			23.928	23.928	2	6.2165E-105	22187	DP1145_7	212.72	149.54			19317000	1244	566	1167	2095;2096;2097	3035;3036;3037;3038;3039;3040	3039		6	9606
ISLIQIFR	Unmodified	988.60695	0.60695147	542	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					21.296	21.296	2	0.012625	16018	DP1145_6	95.793	49.13			3210200	1245	542	1168	2098	3041	3041		1	9606
ISLLLDPGSFVESDMFVEHR	Oxidation (M)	2306.1253	0.12528345	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2.75	1.09	1		2	1		21.752	21.752	2;3	0.00027451	18279	DP1145_8	114.31	87.778			425110000	1246	116	1169	2099;2100;2101;2102	3042;3043;3044;3045;3046;3047;3048	3046	101	6	9606
ISLLLDPGSFVESDMFVEHR	Unmodified	2290.1304	0.13036883	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			22.597	22.597	3	5.9998E-95	19456	DP1145_8	205.15	166.6			74871000	1247	116	1169	2103	3049;3050	3049		2	9606
ISLPLPNFSSLNLR	Unmodified	1569.8879	0.88787736	137	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			22.217	22.217	2	7.310600000000001E-105	18620	DP1145_8	212.28	185.57			88356000	1248	137	1170	2104	3051;3052	3051		2	9606
ISLPVILMDETLK	Unmodified	1470.8368	0.83675299	177	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1.5	0.5	1	1				22.635	22.635	2	0.00082202	17910	DP1145_6	113.69	83.074			3425400	1249	177	1171	2105;2106	3053;3054	3053		2	9606
ISLPVILMDETLK	Oxidation (M)	1486.8317	0.83166761	177	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	1	0	2	0		1				21.144	21.144	2	0.044049	18004	DP1145_7	57.885	28.118			9335400	1250	177	1171	2107	3055	3055	180	0	9606
ISPLQFR	Unmodified	859.49159	0.49158736	315	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	0	1					17.854	17.854	2	0.0062996	10594	DP1145_6	109.7	32.857			17053000	1251	315	1172	2108	3056	3056		0	9606
ISSIQSIVPALEIANAHR	Unmodified	1918.0636	0.063609895	152	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	3	0			1			20.124	20.124	3	8.2761E-05	15854	DP1145_8	123.42	99.585			59708000	1252	152	1173	2109	3057;3058	3057		2	9606
ISSLLEEQFQQGK	Unmodified	1505.7726	0.77257283	355	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	3	2	1				1	18.652	18.652	2	2.1302999999999998E-237	12626	DP1145_10	265.55	211.48			330370000	1253	355	1174	2110;2111	3059;3060;3061;3062	3059		4	9606
ISTINILLSTLK	Unmodified	1314.8123	0.8122528	64	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	1	0	1					22.334	22.334	2	0.040296	17440	DP1145_6	69.65	35.76			4322200	1254	64	1175	2112	3063	3063		1	9606
ISVMGGEQAANVLATITK	Unmodified	1801.9608	0.96078431	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	21.171	21.171	2	1.8491E-151	17290	DP1145_8	226.19	147.84			510050000	1255	700	1176	2113;2114;2115;2116;2117	3064;3065;3066;3067;3068;3069;3070	3067		5	9606
ISVMGGEQAANVLATITK	Oxidation (M)	1817.9557	0.95569893	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.224	20.224	2	2.0636E-18	16013	DP1145_8	146.84	103.34			1051199999.9999999	1256	700	1176	2118	3071;3072	3071	585	2	9606
ISVNDFIIK	Unmodified	1047.5964	0.59644637	151	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	3	0			1			20.169	20.169	2	0.0022248	15922	DP1145_8	104.44	45.52			6960800	1257	151	1177	2119	3073	3073		1	9606
ISVYYNEATGGK	Unmodified	1300.6299	0.62993134	131	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	2.67	1.25	1		1	1		16.593	16.593	2	5.8495E-85	9559	DP1145_9	205.59	153.33			147390000	1258	131	1178	2120;2121;2122	3074;3075;3076;3077	3076		4	9606
ISYSLFTALR	Unmodified	1169.6445	0.64445919	519	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	4	0				1		20.717	20.717	2	1.7395E-05	15693	DP1145_9	137.13	84.648			7790600	1259	519	1179	2123	3078	3078		1	9606
ITCTVNNMVCEVVK	Oxidation (M)	1681.7837	0.78374792	790				yes	yes	0	1	0	5	0					1	17.355	17.355	2	0.029867	10946	DP1145_10	67.153	25.99	+		1933899999.9999998	1260	790	1180	2124	3079	3079	646	1	9606
ITDIIGKEEGIGPENLR	Unmodified	1852.9894	0.9894419	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.8	0.748	2	2	1			18.206	18.206	2;3	2.3525E-194	11100	DP1145_6	249.39	249.39			1535899999.9999998	1261	438	1181	2125;2126;2127;2128;2129	3080;3081;3082;3083;3084;3085;3086	3080		7	9606
ITELMQVLK	Oxidation (M)	1089.6104	0.61038187	222	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	1	0	1	0	1					17.754	17.754	2	0.019726	10442	DP1145_6	81.191	14.391			8517900	1262	222	1182	2130	3087	3087	217	1	9606
ITFLLQAIR	Unmodified	1073.6597	0.65971533	31	O00410	IPO5	Importin-5	yes	yes	0	0	0	2	0		1				20.665	20.665	2	0.012149	17317	DP1145_7	96.19	46.749			26755000	1263	31	1183	2131	3088	3088		0	9606
ITGEAFVQFASQELAEK	Unmodified	1866.9363	0.9363437	310	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	3.5	0.5			1	1		21.975	21.975	2	2.547E-249	17657	DP1145_9	265.77	229.09			119950000	1264	310	1184	2132;2133	3089;3090;3091	3090		3	9606
ITGMLLEIDNSELLHMLESPESLR	2 Oxidation (M)	2771.3721	0.37213202	160	P11940;Q13310	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	yes	no	0	2	0	3	0			1			21.818	21.818	3	0.0013623	18118	DP1145_8	66.889	46.538			38141000	1265	160	1185	2134	3092;3093	3092	172;173	2	9606
ITGVFSMR	Acetyl (Protein N-term);Oxidation (M)	967.4797	0.47970205	704	Q9NPH0	ACP6	Lysophosphatidic acid phosphatase type 6	yes	yes	1	1	0	2	0		1				19.913	19.913	2	0.041317	16249	DP1145_7	48.504	10.858			0	1266	704	1186	2135	3094	3094	591	1	9606
ITHQIVDRPGQQTSVIGR	Unmodified	2004.0865	0.086470602	35	O00541	PES1	Pescadillo homolog	yes	yes	0	0	1	3	0			1			15.078	15.078	4	0.039912	8107	DP1145_8	66.809	46.63			98723000	1267	35	1187	2136	3095	3095		1	9606
ITISPLQELTLYNPER	Unmodified	1886.0149	0.014928368	32	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			21.818	21.818	2	0.00016571	18439	DP1145_8	124.86	88.41			18471000	1268	32	1188	2137	3096	3096		1	9606
ITISSLQDLTLYNPER	Unmodified	1861.9785	0.97854286	729	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			21.363	21.363	2	1.4794E-06	17619	DP1145_8	132.86	102.3			0	1269	729	1189	2138	3097	3097		1	9606
ITKPDGIVEER	Unmodified	1255.6772	0.67721588	26	O00165	HAX1	HCLS1-associated protein X-1	yes	yes	0	0	1	4	0				1		14.704	14.704	3	0.0036458	6701	DP1145_9	102.05	70.569			23949000	1270	26	1190	2139	3098	3098		1	9606
ITLIIGGSYGAGNYGMCGR	Oxidation (M)	1974.9292	0.9291666	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3	0			1			19.524	19.524	2	1.7699E-09	15049	DP1145_8	137.62	119.9			410270000	1271	700	1191	2140	3099;3100	3099	586	2	9606
ITLIIGGSYGAGNYGMCGR	Unmodified	1958.9343	0.93425198	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.124	20.124	2	6.3401E-13	16017	DP1145_8	145.31	102.34			106420000	1272	700	1191	2141	3101	3101		1	9606
ITPENLPQILLQLK	Unmodified	1618.9658	0.96579333	273	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		1				22.622	22.622	2	7.151900000000001E-25	20213	DP1145_7	157.97	133.7			31647000	1273	273	1192	2142	3102	3102		1	9606
ITPSYVAFTPEGER	Unmodified	1565.7726	0.77257283	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			18.523	18.523	2	0.018344	13631	DP1145_8	78.903	40.189			141690000	1274	153	1193	2143	3103	3103		1	9606
ITSEAEDLVANFFPK	Unmodified	1679.8407	0.8406524	343	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		22.689	22.689	2	4.1947E-05	18558	DP1145_9	127.83	100.35			7188400	1275	343	1194	2144	3104;3105;3106	3105		3	9606
ITSENPDEGFKPSSGTVQELNFR	Unmodified	2551.2191	0.2190605	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	1	1	0	2					18.355	18.355	2;3	1.2671999999999999E-99	11488	DP1145_6	242.9	216.38			2162600000	1276	41;438	1195	2145;2146	3107;3108	3107		2	9606
ITVLEALR	Unmodified	913.55967	0.55966693	718	Q9NVI7;Q5T2N8;Q5T9A4	ATAD3A;ATAD3C;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			1			18.924	18.924	2	0.045629	14256	DP1145_8	82.671	17.914			60561000	1277	718	1196	2147	3109	3109		1	9606
ITVTSEVPFSK	Unmodified	1206.6496	0.64960415	241	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	5	0					1	17.848	17.848	2	0.0039489	11471	DP1145_10	98.943	60.856			277120000	1278	241	1197	2148	3110	3110		0	9606
IVAERPGTNSTGPAPMAPPR	Oxidation (M)	2034.0317	0.031657839	444	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	1	2	0		1				14.744	14.744	3	0.001113	8300	DP1145_7	110.74	81.658			25712000	1279	444	1198	2149	3111	3111	420	1	9606
IVALNAHTFLR	Unmodified	1253.7244	0.72444085	200;4	P22087;A6NHQ2	FBL;FBLL1	rRNA 2'-O-methyltransferase fibrillarin;rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	no	no	0	0	0	4	0				1		17.923	17.923	3	0.0043996	11836	DP1145_9	103.26	63.708			356600000	1280	200;4	1199	2150	3112	3112		1	9606
IVDDDVSWTAISTTK	Unmodified	1649.8148	0.81483158	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3	1		1		1		19.223	19.223	2	4.1513E-23	15310	DP1145_7	157.03	110.57			71705000	1281	656	1200	2151;2152	3113;3114	3113		2	9606
IVDGPDPENIILILK	Unmodified	1647.9447	0.94472354	73	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	1	0	1					22.295	22.295	2	0.007064	17413	DP1145_6	100.72	66.19			1648900	1282	73	1201	2153	3115;3116	3116		2	9606
IVEIPFNSTNK	Unmodified	1260.6714	0.67140222	112	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	5	0					1	17.948	17.948	2	0.0037747	11592	DP1145_10	99.139	36.592			18123000	1283	112	1202	2154	3117	3117		0	9606
IVEPYIAWGYPNLK	Unmodified	1661.8817	0.88172935	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		21.11	21.11	2	4.1775E-17	16520	DP1145_9	147.4	62.115			174800000	1284	191	1203	2155	3118;3119	3119		2	9606
IVEPYVTWGFPNLK	Unmodified	1661.8817	0.88172935	539	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	5	0					1	21.861	21.861	2	0.024354	17283	DP1145_10	79.201	17.422			3468100	1285	539	1204	2156	3120	3120		0	9606
IVFVPGCSIPLTIVK	Unmodified	1641.9528	0.9527858	319	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			21.325	21.325	2	0.028607	17453	DP1145_8	74.698	51.184			21705000	1286	319	1205	2157	3121	3121		0	9606
IVFVTGNAK	Unmodified	947.54402	0.54401687	674	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	yes	yes	0	0	0	5	0					1	16.371	16.371	2	0.003644	9019	DP1145_10	114.5	60.293			0	1287	674	1206	2158	3122	3122		1	9606
IVGDLAQFMVQNGLSR	Unmodified	1746.9087	0.90868916	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		21.691	21.691	2	0	18795	DP1145_7	279.56	208.34			986690000	1288	158	1207	2159;2160;2161;2162	3123;3124;3125;3126;3127;3128;3129;3130	3126		8	9606
IVGDLAQFMVQNGLSR	Oxidation (M)	1762.9036	0.90360378	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				19.763	19.763	2	2.3916E-17	16040	DP1145_7	148.96	112.37			316370000	1289	158	1207	2163	3131;3132	3131	166	2	9606
IVIGYQSHADTATK	Unmodified	1502.7729	0.77290718	124	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	5	0					1	15.114	15.114	3	0.013659	7080	DP1145_10	79.089	38.613			11990000	1290	124	1208	2164	3133	3133		0	9606
IVILEYQPSK	Unmodified	1188.6754	0.67542497	494	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					18.355	18.355	2	0.0012247	11328	DP1145_6	99.136	61.324			9127900	1291	494	1209	2165	3134	3134		0	9606
IVLDNSVFSEHR	Unmodified	1414.7205	0.72047768	411	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1.5	0.5	1	1				17.741	17.741	2;3	0.015707	10569	DP1145_6	80.763	24.332			25199000	1292	411	1210	2166;2167	3135;3136	3135		2	9606
IVNSSMELAQTAK	Oxidation (M)	1406.7075	0.70752973	780	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	1	0	1	0	1					15.032	15.032	2	4.1704E-05	6240	DP1145_6	129.88	74.793			0	1293	780	1211	2168	3137	3137	642	1	9606
IVQVALNGLENILR	Unmodified	1550.9144	0.91442646	309	P52294;O60684;O15131	KPNA1;KPNA6;KPNA5	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6	yes	no	0	0	0	3	0			1			21.928	21.928	2	0.010914	18424	DP1145_8	103.08	72.514			0	1294	309	1212	2169	3138	3138		1	9606
IVVNLTGR	Unmodified	870.5287	0.52870115	356	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	16.869	16.869	2	2.181E-23	9719	DP1145_10	167.82	79.182			193580000	1295	356	1213	2170	3139;3140;3141	3140		3	9606
IVVVTAGVR	Unmodified	912.57565	0.57565135	129	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		16.056	16.056	2	0.0038017	8704	DP1145_9	116.88	47.708			148350000	1296	129	1214	2171	3142;3143	3143		2	9606
IVYLYTK	Unmodified	898.51641	0.51640513	289	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	5	0					1	16.969	16.969	2	0.00025719	9974	DP1145_10	123.99	66.536			160150000	1297	289	1215	2172	3144	3144		1	9606
IWDPTPSHTPAGAATPGR	Unmodified	1830.9013	0.90129559	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				16.196	16.196	3	0.0023258	10535	DP1145_7	85.576	62.666			39250000	1298	80	1216	2173	3145	3145		1	9606
IWIFDGPTGEGR	Unmodified	1346.6619	0.66190017	593	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					20.555	20.555	2	0.026737	14955	DP1145_6	74.533	35.229			10816000	1299	593	1217	2174	3146	3146		1	9606
IWSEPFYQETYLPYMIR	Oxidation (M)	2251.066	0.06597766	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					22.058	22.058	2	0.0058995	17082	DP1145_6	95.273	69.295			5246800	1300	401	1218	2175	3147	3147	349	1	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Oxidation (M)	2640.3006	0.30062206	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.6	1.02	1	1	2	1		19.57	19.57	2;3	7.2142E-08	13411	DP1145_6	113.65	97.542			1176600000	1301	639	1219	2176;2177;2178;2179;2180	3148;3149;3150;3151;3152;3153;3154;3155;3156	3148	542	9	9606
IYAEDPSNNFMPVAGPLVHLSTPR	Unmodified	2624.3057	0.30570743	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			20.502	20.502	3	9.218499999999998E-19	17075	DP1145_7	138.09	121.28			540190000	1302	639	1219	2181;2182;2183	3157;3158;3159;3160;3161;3162	3158		5	9606
IYGFYDECK	Unmodified	1193.5063	0.50631073	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	3.5	0.5			1	1		18.223	18.223	2	4.368E-17	12282	DP1145_9	161.9	138.13			1004399999.9999999	1303	251;352	1220	2184;2185	3163;3164;3165	3164		3	9606
IYGFYDECKR	Unmodified	1349.6074	0.60742176	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.33	0.471			2	1		16.823	16.823	2;3	1.1159E-19	10787	DP1145_8	143.73	103.67			519900000	1304	251;352	1221	2186;2187;2188	3166;3167;3168	3167		0	9606
IYIDSNNNPER	Unmodified	1333.6262	0.62624295	411	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					15.532	15.532	2	0.00014633	6945	DP1145_6	128.27	79.986			31197000	1305	411	1222	2189	3169;3170	3169		2	9606
IYKCPMCREFFSER	Oxidation (M)	1937.8586	0.8586442	578	Q8N3J9	ZNF664	Zinc finger protein 664	yes	yes	0	1	2	3	0			1			24.65	24.65	2	0.028907	22330	DP1145_8	103.26	68.505			5427600	1306	578	1223	2190	3171	3171	508	1	9606
IYPYLVMNDACLTESR	Unmodified	1943.9121	0.91211956	780	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	1	0	1					18.555	18.555	2	0.025343	11729	DP1145_6	73.9	20.332			306240000	1307	780	1224	2191	3172	3172		1	9606
KADTEEEFLAFR	Unmodified	1454.7042	0.70415892	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	1	1		1			18.439	18.439	2	0.0072645	13362	DP1145_8	101.95	62.329			110240000	1308	276	1225	2192;2193	3173;3174	3174		1	9606
KADTEEEFLAFRK	Unmodified	1582.7991	0.79912193	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1	0	1					16.853	16.853	3	0.0079701	9132	DP1145_6	99.732	63.624			14973000	1309	276	1226	2194	3175	3175		0	9606
KADVEEEFLALR	Unmodified	1418.7405	0.74054442	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	1	0	1					19.055	19.055	2	2.9451E-06	12565	DP1145_6	120.86	68.906			15945000	1310	276	1227	2195	3176	3176		0	9606
KADVEEEFLALRK	Unmodified	1546.8355	0.83550744	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	2	2	0		1				17.799	17.799	3	4.4276E-05	12914	DP1145_7	113.52	88.992			72558000	1311	276	1228	2196	3177	3177		1	9606
KADVEEESLALR	Unmodified	1358.7042	0.70415892	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.022	16.022	2	2.5478E-42	10200	DP1145_7	201.09	122.83			115430000	1312	276	1229	2197	3178;3179;3180;3181	3178		4	9606
KAEAGAGSATEFQFR	Unmodified	1568.7583	0.75831975	283	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	1	5	0					1	16.187	16.187	3	1.7753000000000002E-24	8755	DP1145_10	118.52	92.542			56493000	1313	283	1230	2198	3182;3183	3182		2	9606
KAEAVVNTVDISEREK	Unmodified	1786.9425	0.94249171	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	2	1	0	1					15.035	15.035	3	0.014688	6245	DP1145_6	97.904	64.757			0	1314	575	1231	2199	3184	3184		1	9606
KAEEATEAQEVVEATPEGACTEPR	Unmodified	2601.1864	0.18643974	83	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	1	4	0				1		16.846	16.846	3	6.435E-244	10038	DP1145_9	274.3	229.44			58210000	1315	83	1232	2200	3185;3186;3187	3186		3	9606
KAEVNTIPGFDGVVK	Unmodified	1572.8512	0.8511575	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	2	1	1		1			17.638	17.638	2;3	0.013864	12105	DP1145_8	93.716	69.02			512550000	1316	115	1233	2201;2202	3188;3189	3189		1	9606
KAEVNTIPGFDGVVKDAEEAVR	Unmodified	2343.207	0.20703925	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	3	0.707		1	2	1		19.812	19.812	3;4	4.4658E-42	15427	DP1145_8	171.84	144.46			823030000	1317	115	1234	2203;2204;2205;2206	3190;3191;3192;3193	3191		2	9606
KAGNFYVPAEPK	Unmodified	1319.6874	0.68738664	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	3	1.41	1			2		15.695	15.695	2;3	5.8997E-23	8161	DP1145_9	195.83	154.95			555310000	1318	191	1235	2207;2208;2209	3194;3195;3196;3197	3196		4	9606
KAGPGSLELCGLPSQK	Unmodified	1640.8556	0.85559095	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	0.816		2	2	2		16.848	16.848	2;3	0	11610	DP1145_7	290.17	189.35			3532499999.9999995	1319	474	1236	2210;2211;2212;2213;2214;2215	3198;3199;3200;3201;3202;3203;3204;3205;3206	3200		9	9606
KAIIIFVPVPQLK	Unmodified	1464.9432	0.9432074	351	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					1	19.934	19.934	2	0.017784	14637	DP1145_10	119.16	115.07			27112000	1320	351	1237	2216	3207	3207		0	9606
KALAAAGYDVEK	Unmodified	1234.6558	0.65575216	150;176;175	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				2		14.674	14.674	2;3	1.8671E-10	6641	DP1145_9	142.1	67.932			441290000	1321	176;150;175	1238	2217;2218	3208;3209;3210;3211	3210		4	9606
KALAAAGYDVEKNNSR	Unmodified	1705.8747	0.87474649	150;176;175	P16403;Q02539;P22492;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3	no	no	0	0	2	4	0				1		14.077	14.077	3	1.9353E-20	5754	DP1145_9	153.48	128.16			13704000	1322	176;150;175	1239	2219	3212	3212		0	9606
KALYEALKENEK	Unmodified	1434.7718	0.77184455	79	O75496	GMNN	Geminin	yes	yes	0	0	2	4	0				1		14.996	14.996	3	1.9688E-42	7047	DP1145_9	196.02	166.95			11289000	1323	79	1240	2220	3213	3213		1	9606
KASGPPVSELITK	Unmodified	1325.7555	0.7554662	150;176;175	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				2		15.878	15.878	2;3	1.4379E-23	8288	DP1145_9	161.48	110.2			3866099999.9999995	1324	176;150;175	1241	2221;2222	3214;3215;3216;3217;3218;3219	3219		6	9606
KAYGGAYDVMSSK	Unmodified	1375.6442	0.6442012	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			1			15.451	15.451	3	0.0046786	8792	DP1145_8	93.348	71.32			50502000	1325	116	1242	2223	3220	3220		1	9606
KCPFTGNVSIR	Unmodified	1277.655	0.65504065	363	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	1	5	0					1	15.713	15.713	3	7.8861E-28	7968	DP1145_10	169.52	98.577			12226000	1326	363	1243	2224	3221	3221		1	9606
KDAEAWFNEK	Unmodified	1236.5775	0.57750184	15	CON__P13645;P13645;CON__Q7Z3Y7;Q7Z3Y7	KRT10;KRT28	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28	yes	no	0	0	1	3	0			1			16.579	16.579	2	1.0064E-06	10408	DP1145_8	138.76	52.092		+	0	1327	15	1244	2225	3222	3222		1	9606
KDCEVVMMIGLPGAGK	2 Oxidation (M)	1735.8307	0.83069811	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	2	1	2	0		2				17.133	17.133	2;3	0.0019733	11875	DP1145_7	103.21	70.463			61817000	1328	412	1245	2226;2227	3223;3224	3223	369;370	1	9606
KDEDPENKIEFK	Unmodified	1490.7253	0.72528829	440	Q13123	IK	Protein Red	yes	yes	0	0	2	3	0			1			14.781	14.781	3	4.4339E-07	7746	DP1145_8	130.44	94.661			132360000	1329	440	1246	2228	3225	3225		1	9606
KDLPPLLLK	Unmodified	1035.6692	0.66921738	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	1	0	1					17.253	17.253	2	7.8652E-08	9715	DP1145_6	125.16	59.914			25583000	1330	681	1247	2229	3226	3226		0	9606
KEAPPMEKPEVVK	Unmodified	1480.796	0.79595081	374	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	2	5	0					1	13.795	13.795	3	0.013126	5212	DP1145_10	109.44	86.216			1229500	1331	374	1248	2230	3227	3227		1	9606
KEPPKEETAQLTGPEAGR	Unmodified	1936.9854	0.98541915	287	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	2	2	0		1				14.012	14.012	3	0.00079006	7257	DP1145_7	114.03	72.651			9666300	1332	287	1249	2231	3228	3228		1	9606
KESYSIYVYK	Unmodified	1278.6496	0.64960415	128	Q8N257;Q16778;P33778;P23527;P06899;Q6DRA6;Q6DN03	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST2H2BD;HIST2H2BC	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	1	5	0					1	16.403	16.403	2	0.0070722	9204	DP1145_10	125.75	84.32			281830000	1333	128	1250	2232	3229	3229		1	9606
KEVKEELSAVER	Unmodified	1415.762	0.76200815	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	1	0	1					14.444	14.444	3	0.0073782	5411	DP1145_6	93.766	42.514			18600000	1334	276	1251	2233	3230	3230		0	9606
KFEEEGNPYYSSAR	Unmodified	1675.7478	0.74781464	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	1.5	2	1	2	1	2	15.644	15.644	2;3	1.0777000000000001E-142	8925	DP1145_8	227.48	195.42			6144399999.999999	1335	700	1252	2234;2235;2236;2237;2238;2239;2240;2241	3231;3232;3233;3234;3235;3236;3237;3238;3239	3238		8	9606
KFGDPVVQSDMK	Oxidation (M)	1365.6599	0.65985126	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			14.731	14.731	2	3.7363E-43	7604	DP1145_8	175.33	124.52			47566000	1336	148	1253	2242	3240;3241	3241	140	2	9606
KFGYVDFESAEDLEK	Unmodified	1775.8254	0.82539626	194	P19338	NCL	Nucleolin	yes	yes	0	0	1	2	0		2				19.096	19.096	2;3	8.474499999999999E-39	15085	DP1145_7	198.81	133.18			552010000	1337	194	1254	2243;2244	3242;3243	3243		1	9606
KFQPLFGDFAAEK	Unmodified	1496.7664	0.76636524	486	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	1	4	0				2		19.023	19.023	2;3	0.016121	13459	DP1145_9	97.163	6.0755			19319000	1338	486	1255	2245;2246	3244;3245	3245		1	9606
KFVADGIFK	Unmodified	1023.5753	0.57531699	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	2.5	1.5	1			1		17.212	17.212	2	0.003585	9605	DP1145_6	116.37	49.34			79313000	1339	205	1256	2247;2248	3246;3247;3248	3246		3	9606
KGLTPSQIGVILR	Unmodified	1380.8453	0.84528426	362	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					1	18.048	18.048	3	0.0067905	11671	DP1145_10	73.273	44.058			43924000	1340	362	1257	2249	3249	3249		1	9606
KGTHFVQLCCQR	Unmodified	1532.734	0.73403603	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2	1	1		1			14.589	14.589	3	1.8609E-42	7382	DP1145_8	151.79	122.98			605600000	1341	700	1258	2250;2251	3250;3251	3251		2	9606
KGVAINMVTEEDKR	Oxidation (M)	1604.8192	0.81920545	338	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	1	2	4	0				1		13.979	13.979	3	8.8408E-08	5615	DP1145_9	136.14	99.564			5630600	1342	338	1259	2252	3252	3252	305	1	9606
KHHLQPENPGPGGAAPSLEQNR	Unmodified	2333.1625	0.16248909	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.69	1.14	2	4	4	2	1	14.761	14.761	2;3;4;5	4.7269E-82	7543	DP1145_8	190.64	171.23			8342199999.999999	1343	474	1260	2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265	3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264;3265;3266;3267;3268;3269;3270;3271;3272;3273;3274	3268		22	9606
KHLEINPDHPIVETLR	Unmodified	1910.0374	0.037395144	136	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	2	0		1				16.419	16.419	4	0.018817	10746	DP1145_7	55.011	48.743			149810000	1344	136	1261	2266	3275	3275		1	9606
KHPDADSLYVEEVDVGEIAPR	Unmodified	2338.1441	0.14410464	434	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	4	0				1		18.623	18.623	4	0.030373	12751	DP1145_9	44.816	20.516			21055000	1345	434	1262	2267	3276	3276		0	9606
KHPDASVNFSEFSK	Unmodified	1591.7631	0.76307078	142	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	1	4	0				1		16.152	16.152	3	0.0031057	8854	DP1145_9	87.447	59.681			0	1346	142	1263	2268	3277	3277		1	9606
KIAPYVAHNFSK	Unmodified	1373.7456	0.74557022	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.5	0.5		1	1			14.725	14.725	3	0.0042507	8226	DP1145_7	115.92	88.276			192990000	1347	158	1264	2269;2270	3278;3279;3280	3278		3	9606
KIDKYTEVLK	Unmodified	1235.7125	0.71253876	260	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	2	1	0	1					15.046	15.046	3	0.0029118	6306	DP1145_6	126.71	77.289			18952000	1348	260	1265	2271	3281	3281		1	9606
KIEQVDKEDEITEK	Unmodified	1702.8625	0.86251005	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	2	3	0			1			14.131	14.131	3	0.0099711	6698	DP1145_8	111.72	39.012			73092000	1349	768	1266	2272	3282	3282		1	9606
KIHNANPELTDGQIQAMLR	Oxidation (M)	2164.1059	0.10588542	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					16.374	16.374	3;4	0.00012204	8162	DP1145_6	122.46	93.247			52375000	1350	438	1267	2273;2274	3283;3284	3284	392	1	9606
KILALLDALSTVHSQK	Unmodified	1736.0196	0.019619815	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	1	2	0		1				19.6	19.6	3	0.016578	15923	DP1145_7	100.68	74.45			34055000	1351	476	1268	2275	3285	3285		1	9606
KIQEILTQVK	Unmodified	1198.7285	0.72852317	32	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	1	3	0			1			16.162	16.162	2	4.223E-07	9779	DP1145_8	145.25	55.097			63903000	1352	32	1269	2276	3286	3286		1	9606
KITEAIGIISK	Unmodified	1171.7176	0.71762413	482	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	1	2	0		1				16.541	16.541	2	0.0051916	11042	DP1145_7	98.898	52.77			9029400	1353	482	1270	2277	3287	3287		0	9606
KKAEAVVNTVDISER	Unmodified	1657.8999	0.89989861	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	2	2	0		1				14.928	14.928	3	0.01824	8413	DP1145_7	99.796	78.543			76470000	1354	575	1271	2278	3288	3288		0	9606
KKELEEIVQPIISK	Unmodified	1652.9713	0.97127264	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	2	3	0			2			17.285	17.285	2;3	6.0581E-08	11591	DP1145_8	135.02	92.682			52250000	1355	153	1272	2279;2280	3289;3290	3290		0	9606
KKHHLQPENPGPGGAAPSLEQNR	Unmodified	2461.2575	0.25745211	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2.88	1.05	1	2	2	3		14.702	14.702	3;4;5	2.8893E-68	8105	DP1145_7	186.88	143.76			1323900000	1356	474	1273	2281;2282;2283;2284;2285;2286;2287;2288	3291;3292;3293;3294;3295;3296;3297;3298;3299;3300;3301	3295		9	9606
KKPLDGEYFTLQIR	Unmodified	1706.9356	0.93555583	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	2	3.33	0.471			2	1		18.123	18.123	3;4	0.0095271	12921	DP1145_8	106.54	76.436			119340000	1357	110	1274	2289;2290;2291	3302;3303;3304	3302		1	9606
KKQEQLTPGVVYVR	Unmodified	1643.9359	0.93589019	675	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	2	4	0				1		15.318	15.318	3	0.025789	7626	DP1145_9	68.277	44.286			76686000	1358	675	1275	2292	3305	3305		0	9606
KLAAAEGLEPK	Unmodified	1125.6394	0.63937381	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4	0				1		14.674	14.674	2	0.0095251	6484	DP1145_9	103.26	54.832			32535000	1359	268	1276	2293	3306	3306		1	9606
KLASASLLDTDKR	Unmodified	1416.7936	0.79364262	724	Q9NY61	AATF	Protein AATF	yes	yes	0	0	2	2.5	0.5		1	1			14.905	14.905	3	1.4632E-133	8533	DP1145_7	217.2	172.12			140670000	1360	724	1277	2294;2295	3307;3308	3307		1	9606
KLAVNMVPFPR	Oxidation (M)	1286.7169	0.71691263	395;131;460;455;664	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB3;TUBB1;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	1	1	3	0			2			16.924	16.924	2;3	0.011649	11010	DP1145_8	78.149	78.149			667120000	1361	131;395;460;455;664	1278	2296;2297	3309;3310	3310	123	2	9606
KLDAEDVIGSR	Unmodified	1201.6303	0.63026569	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				16.226	16.226	2	4.1834E-12	10613	DP1145_7	150.1	93.672			65823000	1362	276	1279	2298	3311	3311		1	9606
KLDELYGTWR	Unmodified	1279.6561	0.65608651	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			17.92	17.92	2	0.013333	12575	DP1145_8	101.46	65.552			85362000	1363	250	1280	2299	3312	3312		1	9606
KLDQEMEQLNHHTTTR	Unmodified	1979.9483	0.94832214	613	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	1	2	0		1				14.725	14.725	4	0.028259	8211	DP1145_7	53.504	31.139			11907000	1364	613	1281	2300	3313	3313		0	9606
KLDVTIEPSEEPLFPADELYGIVGANLK	Unmodified	3056.5958	0.59578425	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			1	1		22.898	22.898	3	6.8979E-25	19953	DP1145_8	144.55	133.74			38327000	1365	700	1282	2301;2302	3314;3315;3316;3317;3318;3319;3320	3315		7	9606
KLDVTIEPSEEPLFPADELYGIVGANLKR	Unmodified	3212.6969	0.69689528	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	2	3	0			2			22.018	22.018	3;4	0.0038728	18721	DP1145_8	53.525	39.291			18073000	1366	700	1283	2303;2304	3321;3322	3321		2	9606
KLEAAEDIAYQLSR	Unmodified	1605.8362	0.83623572	238	P35232	PHB	Prohibitin	yes	yes	0	0	1	4	0				2		18.723	18.723	2;3	1.7155E-242	12902	DP1145_9	263.89	198.74			158850000	1367	238	1284	2305;2306	3323;3324;3325	3323		3	9606
KLEEEQIILEDQNCK	Unmodified	1887.9248	0.92479273	243	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	0	1					16.966	16.966	3	0.0038143	9228	DP1145_6	97.836	66.159			0	1368	243	1285	2307	3326	3326		1	9606
KLESQMMAMVER	3 Oxidation (M)	1499.6782	0.67822022	206	P23508	MCC	Colorectal mutant cancer protein	yes	yes	0	3	1	2	0		1				17.146	17.146	2	0.042744	11989	DP1145_7	42.718	8.6311			0	1369	206	1286	2308	3327	3327	206;207;208	1	9606
KLESVFFHSLSGSK	Unmodified	1564.8249	0.82494275	591	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	1	5	0					1	17.647	17.647	3	0.024394	11091	DP1145_10	107.74	76.257			8444900	1370	591	1287	2309	3328	3328		1	9606
KLETDGKLPPTVSK	Unmodified	1511.8559	0.85590853	536	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	2	3	1		1		1		14.338	14.338	3	1.0746E-16	7631	DP1145_7	152.11	99.285			29580000	1371	536	1288	2310;2311	3329;3330;3331	3329		2	9606
KLFIGGLSFETTDESLR	Unmodified	1911.9942	0.99419293	143	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				2		20.124	20.124	2;3	6.2043E-126	14954	DP1145_9	179.74	156.67			163810000	1372	143	1289	2312;2313	3332;3333;3334;3335	3334		4	9606
KLFVGGIKEDTEEHHLR	Unmodified	2007.0538	0.05377349	201	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	2	4	0				1		15.197	15.197	4	0.0094589	7257	DP1145_9	136.83	0			81663000	1373	201	1290	2314	3336	3336		1	9606
KLGVQTVAVYSEADR	Unmodified	1634.8628	0.86278482	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	2.5	0.5		2	2			16.664	16.664	2;3	8.764900000000001E-34	11364	DP1145_7	166.62	118.02			1191300000	1374	639	1291	2315;2316;2317;2318	3337;3338;3339;3340	3338		4	9606
KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR	Unmodified	4242.1822	0.18216849	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	4.33	0.471				2	1	19.496	19.496	4;5	6.5293E-40	13816	DP1145_9	123.84	110.79			613470000	1375	474	1292	2319;2320;2321	3341;3342;3343;3344;3345;3346;3347;3348;3349;3350	3345		10	9606
KLHYNEGLNIK	Unmodified	1327.7248	0.72483478	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	4.33	0.471				2	1	15.021	15.021	2;3	1.6618E-19	6968	DP1145_9	144.17	85.542			2282200000	1376	268	1293	2322;2323;2324	3351;3352;3353;3354	3353		4	9606
KLPAIALDLLR	Unmodified	1221.7809	0.78089309	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				20.165	20.165	2	0.020633	16399	DP1145_7	86.898	56.731			70922000	1377	655	1294	2325	3355	3355		0	9606
KLPIQEFHLSR	Unmodified	1366.7721	0.77211932	258	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	1	4	0				1		17.122	17.122	3	0.0067237	10489	DP1145_9	89.805	48.1			71730000	1378	258	1295	2326	3356	3356		0	9606
KLPPPPGSPLGHSPTASPPPTAR	Unmodified	2258.2172	0.21715042	99	O95785	WIZ	Protein Wiz	yes	yes	0	0	1	2	0		1				15.64	15.64	4	0.032099	9618	DP1145_7	41.798	21.979			12770000	1379	99	1296	2327	3357	3357		0	9606
KLYDIDVAK	Unmodified	1063.5914	0.59136099	369	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					1	16.053	16.053	2	7.7199E-16	8546	DP1145_10	157.99	106.8			87880000	1380	369	1297	2328	3358	3358		1	9606
KNFYFLEMNTR	Unmodified	1461.7075	0.70747015	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.723	18.723	3	4.0532E-19	13847	DP1145_8	136.5	106.16			135140000	1381	115	1298	2329	3359	3359		1	9606
KNPASLPLTQAALK	Unmodified	1450.8508	0.85076357	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	1.67	0.471	1	2				16.565	16.565	2;3	2.1672E-16	11103	DP1145_7	158.01	104.89			359560000	1382	451	1299	2330;2331;2332	3360;3361;3362	3362		3	9606
KNPLPPSVGVVDKK	Unmodified	1476.8664	0.86641364	588	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	2	3	0			1			14.532	14.532	3	1.1198000000000001E-33	7173	DP1145_8	164.7	94.133			54849000	1383	588	1300	2333	3363;3364	3363		2	9606
KPALVSTVEGGQDPK	Unmodified	1524.8148	0.814772	475	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	1	0	1					15.135	15.135	3	0.00037735	6352	DP1145_6	95.067	67.395			11577000	1384	475	1301	2334	3365	3365		1	9606
KPGQSFQEQVEHYRDK	Unmodified	1974.9548	0.95478773	46	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	2	2	0		1				15.397	15.397	4	0.024313	9211	DP1145_7	77.068	52.276			14982000	1385	46	1302	2335	3366	3366		1	9606
KPLFHGDSEIDQLFR	Unmodified	1800.9159	0.91588303	122	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	4	0				2		18.923	18.923	2;4	0.015351	13399	DP1145_9	60.937	39.077			27394000	1386	122	1303	2336;2337	3367;3368	3367		2	9606
KPLLSPIPELPEVPEMTPSIPSIR	Oxidation (M)	2655.4557	0.45572572	538	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	1	1	2	0		1				20.763	20.763	3	0.040095	17590	DP1145_7	62.605	40.481			15761000	1387	538	1304	2338	3369	3369	477	1	9606
KPLPDHVSIVEPK	Unmodified	1457.8242	0.82421447	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	2.5	1.5	1			1		15.325	15.325	3	0.0002878	7709	DP1145_9	140.01	107.58			225820000	1388	205	1305	2339;2340	3370;3371	3371		2	9606
KPLPDHVSIVEPKDEILPTTPISEQK	Unmodified	2909.575	0.57498923	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	2	3.25	1.3	1			3		17.856	17.856	3;4	7.1876E-74	11528	DP1145_9	180.84	137			350620000	1389	205	1306	2341;2342;2343;2344	3372;3373;3374;3375;3376;3377;3378	3374		7	9606
KPLRVDLILENTSK	Unmodified	1624.9512	0.9512059	730	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	2	3	0			1			17.423	17.423	3	0.013375	11807	DP1145_8	83.53	62.946			51964000	1390	730	1307	2345	3379	3379		0	9606
KPLTSSSAAPQRPISTQR	Unmodified	1924.049	0.049022463	501	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	2	4	0				1		13.608	13.608	3	0.0044013	5138	DP1145_9	117.07	87.853			26822000	1391	501	1308	2346	3380;3381	3380		2	9606
KPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGK	Unmodified	3492.7664	0.76642087	426	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			3			13.736	13.736	5;6;7	8.3358E-13	5445	DP1145_8	83.465	74.007			21367000	1392	426	1309	2347;2348;2349	3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393	3390		12	9606
KPPTGPLPPSKEPLK	Unmodified	1584.9239	0.92392852	287	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	2	2	0		1				14.231	14.231	3	0.012102	7539	DP1145_7	80.507	49.436			3353300	1393	287	1310	2350	3394	3394		0	9606
KPTLDKPSPETFVK	Unmodified	1585.8716	0.87155859	519	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	2	4	0				1		15.413	15.413	3	0.014774	7761	DP1145_9	122.1	89.618			65468000	1394	519	1311	2351	3395	3395		1	9606
KPVGEVHSQFSTGHANSPCTIIIGK	Unmodified	2663.349	0.34896923	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.33	0.471		2	1			16.125	16.125	3;4	6.6714E-36	10395	DP1145_7	161.97	127.32			373320000	1395	276	1312	2352;2353;2354	3396;3397;3398;3399;3400	3397		5	9606
KPWQLQGEVTAQK	Unmodified	1511.8096	0.80962704	37	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2.5	0.5		2	2			16.072	16.072	2;3	4.4694E-236	10293	DP1145_7	294.4	224.01			500070000	1396	37	1313	2355;2356;2357;2358	3401;3402;3403;3404;3405;3406;3407	3404		7	9606
KQEIFYTAIVNR	Unmodified	1480.8038	0.80381338	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				17.599	17.599	2	6.4234E-118	12748	DP1145_7	220.29	169.51			25809000	1397	714	1314	2359	3408	3408		1	9606
KQGTIFLAGPPLVK	Unmodified	1467.8813	0.88133542	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.33	0.471			2	1		18.123	18.123	2;3	0.0032088	13024	DP1145_8	145.09	132.13			1522699999.9999998	1398	700	1315	2360;2361;2362	3409;3410;3411	3410		3	9606
KQLGQSEGSVSLSLVK	Unmodified	1658.9203	0.9202997	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	1	3	0			1			16.74	16.74	3	0.0061337	10654	DP1145_8	85.576	52.429			114540000	1399	679	1316	2363	3412	3412		0	9606
KQMVIDVLHPGK	Oxidation (M)	1379.7595	0.75950572	375	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	5	0					1	15.252	15.252	3	8.7673E-07	7219	DP1145_10	129.74	93.071			162320000	1400	375	1317	2364	3413;3414;3415	3414	319	3	9606
KQMVIDVLHPGK	Unmodified	1363.7646	0.7645911	375	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	1	5	0					1	16.206	16.206	3	0.00010311	8727	DP1145_10	121.21	76.594			66121000	1401	375	1317	2365	3416;3417	3416		2	9606
KQNADPQAVTMPATETK	Oxidation (M)	1844.8938	0.89382695	760	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	1	1	3	0			1			13.747	13.747	3	0.041565	6163	DP1145_8	50.722	17.864			0	1402	760	1318	2366	3418	3418	630	1	9606
KQPPVSPGTALVGSQKEPSEVPTPK	Unmodified	2557.3752	0.37516721	182	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	0	0	2	5	0					1	16.106	16.106	3	0.0045204	8614	DP1145_10	96.128	73.997			0	1403	182	1319	2367	3419	3419		1	9606
KQQSIAGSADSKPIDVSR	Unmodified	1885.9858	0.9857535	434	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	2	4	0				1		14.291	14.291	3	3.778E-26	6076	DP1145_9	177.41	132.32			14958000	1404	434	1320	2368	3420	3420		1	9606
KQTALVELLK	Unmodified	1141.7071	0.70705945	10	CON__P02769			yes	yes	0	0	1	3	0			1			17.432	17.432	2	2.0531999999999998E-26	11718	DP1145_8	153.1	70.65		+	123700000	1405	10	1321	2369	3421	3421		0	
KREELSNVLAAMR	Oxidation (M)	1531.8141	0.81406049	778	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	2	5	0					1	15.459	15.459	3	0.0015482	7627	DP1145_10	109.16	85.33			128970000	1406	778	1322	2370	3422;3423	3423	637	2	9606
KRPEDTAASALQEGQTQR	Unmodified	1984.9926	0.9926298	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	2	1	0	1					14.846	14.846	3	0.021844	6039	DP1145_6	107.72	67.446			13540000	1407	735	1323	2371	3424	3424		1	9606
KSAEFLLHMLK	Oxidation (M)	1331.7271	0.72714296	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	1	5	0					2	16.487	16.487	2;3	4.1081E-12	9208	DP1145_10	150.04	114.38			189550000	1408	193	1324	2372;2373	3425;3426;3427	3426	194	3	9606
KSAEFLLHMLK	Unmodified	1315.7322	0.73222834	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	18.148	18.148	3	0.0062897	11977	DP1145_10	108.35	55.335			49465000	1409	193	1324	2374	3428	3428		1	9606
KSDVEAIFSK	Unmodified	1122.5921	0.59208927	133	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	1	4	0				1		16.523	16.523	2	1.0969E-06	9488	DP1145_9	143.5	71.624			141560000	1410	133	1325	2375	3429	3429		1	9606
KSEDGTPAEDGTPAATGGSQPPSMGR	Oxidation (M)	2516.1085	0.10852377	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	1	3	1		1		1		14.13	14.13	3	3.1760999999999996E-59	7434	DP1145_7	175.59	156.88			37755000	1411	655	1326	2376;2377	3430;3431;3432;3433	3431	564	4	9606
KSEIEYYAMLAK	Oxidation (M)	1460.7221	0.72211717	378	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	1	1	5	0					1	17.647	17.647	2	3.2647E-17	10993	DP1145_10	153.74	114.59			73706000	1412	378	1327	2378	3434	3434	322	1	9606
KSFNDDAMLIEK	Oxidation (M)	1425.681	0.68098063	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0.816		2	2	2		16.03	16.03	2;3	7.0487E-24	10204	DP1145_7	160.86	117.57			1289300000	1413	639	1328	2379;2380;2381;2382;2383;2384	3435;3436;3437;3438;3439;3440;3441;3442;3443;3444;3445;3446;3447;3448	3438	543	14	9606
KSFNDDAMLIEK	Unmodified	1409.6861	0.68606601	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			16.823	16.823	3	0.04418	10822	DP1145_8	62.162	27.412			193950000	1414	639	1328	2385	3449	3449		0	9606
KSGVSDHWALDDHHALHLTR	Unmodified	2294.1305	0.13046068	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0			2			15.956	15.956	4;5	8.2088E-10	9450	DP1145_8	137.13	115.35			1967899999.9999998	1415	700	1329	2386;2387	3450;3451;3452;3453;3454;3455;3456	3452		7	9606
KSSGEIVYCGQVFEK	Unmodified	1729.8345	0.83452116	418	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	1	5	0					1	16.783	16.783	3	0.021479	9650	DP1145_10	62.709	37.774			14448000	1416	418	1330	2388	3457	3457		1	9606
KTCTTVAFTQVNSEDKGALAK	Unmodified	2268.142	0.14199615	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	2	4	0				1		15.677	15.677	4	0.0045519	8198	DP1145_9	95.429	72.493			181070000	1417	366	1331	2389	3458;3459	3459		2	9606
KTDKSILVSPTGPSR	Unmodified	1584.8835	0.88352026	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2	0		1				14.531	14.531	3	0.015715	7866	DP1145_7	76.151	33.834			10352000	1418	474	1332	2390	3460	3460		0	9606
KTEELEEESFPER	Unmodified	1621.7471	0.74714594	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		2				16.056	16.056	2;3	7.721099999999999E-40	10304	DP1145_7	174.77	116.64			64347000	1419	767	1333	2391;2392	3461;3462;3463	3463		3	9606
KTTHFVEGGDAGNREDQINR	Unmodified	2243.0679	0.067920004	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	2	4	0				1		13.999	13.999	4	0.04465	5632	DP1145_9	69.422	50.968			146610000	1420	191	1334	2393	3464	3464		1	9606
KTVTAMDVVYALK	Oxidation (M)	1453.7851	0.78505177	371	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	17.821	17.821	2;3	5.4699E-08	11358	DP1145_10	129.37	117.21			148830000	1421	371	1335	2394;2395	3465;3466	3466	316	2	9606
KTVTAMDVVYALK	Unmodified	1437.7901	0.79013715	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.18	19.18	2	0.030214	13513	DP1145_10	87.719	60.748			18185000	1422	371	1335	2396	3467	3467		0	9606
KTVTAMDVVYALKR	Oxidation (M)	1609.8862	0.8861628	371	P62805	HIST1H4A	Histone H4	yes	yes	0	1	2	5	0					1	17.228	17.228	3	9.8781E-25	10314	DP1145_10	155.37	125.35			70485000	1423	371	1336	2397	3468;3469	3468	316	2	9606
KTVTAMDVVYALKR	Unmodified	1593.8912	0.89124818	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	2	5	0					1	18.348	18.348	3	0.0017367	12047	DP1145_10	120.29	95.787			105350000	1424	371	1336	2398	3470	3470		1	9606
KVACIGAWHPAR	Unmodified	1364.7136	0.71355858	257	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	1	2.5	1.5	1			1		14.992	14.992	3	0.0036024	6274	DP1145_6	111.86	63.864			84524000	1425	257	1337	2399;2400	3471;3472	3471		2	9606
KVDVEEEFFALR	Unmodified	1480.7562	0.75619449	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				19.864	19.864	2	0.00032658	16129	DP1145_7	120.63	72.671			27472000	1426	276	1338	2401	3473	3473		1	9606
KVEAPETNIDKTPK	Unmodified	1568.841	0.84098675	71	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	2	2.5	0.5		1	1			13.696	13.696	3	1.4358E-88	6684	DP1145_7	190.24	161.89			5567100	1427	71	1339	2402;2403	3474;3475;3476;3477	3475		4	9606
KVEQPVIEEPALK	Unmodified	1478.8344	0.83444481	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	1	3	0			2			16.242	16.242	2;3	0.015345	9913	DP1145_8	95.094	61.218			71572000	1428	508	1340	2404;2405	3478;3479	3479		0	9606
KVEQPVIEEPALKR	Unmodified	1634.9356	0.93555583	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	2	3.5	0.5			1	1		15.341	15.341	3	0.00014446	8497	DP1145_8	125.47	108.23			93938000	1429	508	1341	2406;2407	3480;3481	3480		1	9606
KVESLQEEIAFLK	Unmodified	1532.845	0.84500949	137	P08670	VIM	Vimentin	yes	yes	0	0	1	3	0			1			19.325	19.325	2	0.015457	14860	DP1145_8	103.43	49.367			82334000	1430	137	1342	2408	3482	3482		1	9606
KVLCLAVAVGHVK	Unmodified	1392.8275	0.82752571	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	5	0					1	16.33	16.33	3	0.023177	9005	DP1145_10	84.365	76.641			45491000	1431	380	1343	2409	3483	3483		1	9606
KVLKPIQLTDPGK	Unmodified	1435.8763	0.87625004	766	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	2	4	0				1		15.208	15.208	3	0.004389	7451	DP1145_9	109.6	85.1			20818000	1432	766	1344	2410	3484	3484		1	9606
KVLTGVAGEDAECHAAK	Unmodified	1754.8621	0.8621329	93	O95373	IPO7	Importin-7	yes	yes	0	0	1	2	0		1				14.03	14.03	3	0.017105	7262	DP1145_7	81.51	52.553			10800000	1433	93	1345	2411	3485	3485		1	9606
KVNNADDFPNLFR	Unmodified	1548.7685	0.76849051	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					18.655	18.655	2;3	1.3774E-10	12084	DP1145_6	138.25	103.56			1472899999.9999998	1434	438	1346	2412;2413	3486;3487	3487		2	9606
KVPQVSTPTLVEVSR	Unmodified	1638.9305	0.93047046	10	CON__P02769			no	no	0	0	1	2.33	1.11	2	1	2	1		17.063	17.063	2;3	3.4945E-166	9381	DP1145_6	220.25	187.72		+	609690000	1435	10	1347	2414;2415;2416;2417;2418;2419	3488;3489;3490;3491;3492;3493;3494;3495	3488		7	
KVTQLDLDGPK	Unmodified	1212.6714	0.67140222	453	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	1	5	0					2	15.377	15.377	2;3	5.9144E-49	7438	DP1145_10	190.57	97.408			0	1436	453	1348	2420;2421	3496;3497	3496		2	9606
KVVNPLFEK	Unmodified	1072.6281	0.62808085	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	2.5	1.5	1			1		15.905	15.905	2	1.0201E-73	8472	DP1145_9	205.12	146.13			701700000	1437	366	1349	2422;2423	3498;3499;3500;3501;3502;3503	3502		6	9606
KVWLDPNETNEIANANSR	Unmodified	2070.013	0.013030887	408	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	1	5	0					1	17.647	17.647	3	3.1544E-19	11098	DP1145_10	149.52	112.17			17266000	1438	408	1350	2424	3504	3504		0	9606
KYDAFLASESLIK	Unmodified	1483.7922	0.79224564	380	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	5	0					1	18.834	18.834	2	9.6255E-05	13030	DP1145_10	122.69	60.926			412010000	1439	380	1351	2425	3505	3505		1	9606
KYEEIDNAPEER	Unmodified	1491.6842	0.68415175	292	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	4	0				1		14.574	14.574	3	3.4337E-14	6362	DP1145_9	138.2	86.928			12839000	1440	292	1352	2426	3506	3506		0	9606
KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	Oxidation (M)	3241.6428	0.6428108	111	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	1	1	5	0					1	19.748	19.748	3	1.741E-09	14433	DP1145_10	72.514	48.562			13130000	1441	111	1353	2427	3507	3507	81	1	9606
KYVIYIER	Unmodified	1082.6124	0.61243078	342	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	1	5	0					1	16.33	16.33	2	0.023301	8898	DP1145_10	107.01	79.125			68959000	1442	342	1354	2428	3508	3508		1	9606
LAAAEGLEPK	Unmodified	997.54441	0.5444108	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4.5	0.5				1	1	15.645	15.645	2	1.0212000000000001E-25	7969	DP1145_9	167.23	95.886			257280000	1443	268	1355	2429;2430	3509;3510;3511	3510		3	9606
LAAAILGGVDQIHIKPGAK	Unmodified	1871.0993	0.09926712	200	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		17.923	17.923	3	0.044628	11840	DP1145_9	71.354	45.845			305600000	1444	200	1356	2431	3512	3512		1	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK	Unmodified	3722.1951	0.19506631	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	4.5	0.5				1	1	18.3	18.3	3	5.5974E-26	12452	DP1145_9	133.91	133.91			761390000	1445	127	1357	2432;2433	3513;3514;3515	3514		3	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK	Unmodified	4117.4483	0.44832088	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		17.821	17.821	3	1.0824E-18	11495	DP1145_9	98.289	98.289			601810000	1446	127	1358	2434	3516;3517	3516		2	9606
LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK	Unmodified	4245.5433	0.5432839	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	2	4	0				1		16.823	16.823	4	8.3623E-61	9936	DP1145_9	162.28	157.17			3325899999.9999995	1447	127	1359	2435	3518;3519;3520;3521	3520		4	9606
LAALSASLAR	Unmodified	971.57638	0.57637963	35	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			17.023	17.023	2	1.1008E-25	11127	DP1145_8	124.08	46.339			143530000	1448	35	1360	2436	3522	3522		0	9606
LAASIAPEIYGHEDVKK	Unmodified	1839.9731	0.97306355	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	1	3	0			1			16.34	16.34	3	0.029113	10074	DP1145_8	78.69	56.325			33271000	1449	236	1361	2437	3523	3523		1	9606
LAATNALLNSLEFTK	Unmodified	1604.8774	0.87737225	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				21.129	21.129	2	1.6384E-17	18019	DP1145_7	152.96	91.614			81205000	1450	478	1362	2438	3524	3524		1	9606
LAAVQLLQFLAPK	Unmodified	1410.8599	0.8598717	722	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2.33	1.25	1	1		1		23.241	23.241	2	1.1448E-16	21170	DP1145_7	147.4	147.4			16996000	1451	722	1363	2439;2440;2441	3525;3526;3527;3528	3527		4	9606
LACDVDQVTR	Unmodified	1175.5605	0.56047157	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					15.369	15.369	2	0.038949	6750	DP1145_6	101.65	37.382			0	1452	401	1364	2442	3529	3529		1	9606
LADFGLAR	Unmodified	861.47085	0.47085192	122;211	P06493;Q00535;P11802;Q00534;P50750;Q96Q40;O94921;Q07002;Q00536;Q00537;Q9NYV4;Q14004;P24941;Q00526	CDK1;CDK5;CDK4;CDK6;CDK9;CDK15;CDK14;CDK18;CDK16;CDK17;CDK12;CDK13;CDK2;CDK3	Cyclin-dependent kinase 1;Cyclin-dependent-like kinase 5;Cyclin-dependent kinase 4;Cyclin-dependent kinase 6;Cyclin-dependent kinase 9;Cyclin-dependent kinase 15;Cyclin-dependent kinase 14;Cyclin-dependent kinase 18;Cyclin-dependent kinase 16;Cyclin-dependent kinase 17;Cyclin-dependent kinase 12;Cyclin-dependent kinase 13;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	no	no	0	0	0	4	0				1		17.822	17.822	2	1.1248E-43	11540	DP1145_9	183.89	0			269670000	1453	122;211	1365	2443	3530	3530		1	9606
LAGANPAVITCDELLLGHEK	Unmodified	2120.0936	0.093589394	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.355	19.355	3	0.0011374	13103	DP1145_6	86.179	53.85			48722000	1454	401	1366	2444	3531	3531		1	9606
LALAGIGQPVKK	Unmodified	1193.7496	0.74959297	757	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	1	2	0		1				16.112	16.112	2	0.044833	10387	DP1145_7	90.601	37.815			25828000	1455	757	1367	2445	3532	3532		1	9606
LALFNPDVCWDR	Unmodified	1504.7133	0.71328381	34	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	5	0					1	21.215	21.215	2	4.9154E-08	16200	DP1145_10	135.43	104.24			31415000	1456	34	1368	2446	3533	3533		1	9606
LALGIPLPELR	Unmodified	1190.7387	0.73869393	221	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					21.396	21.396	2	0.0032847	16108	DP1145_6	107.69	93.536			10599000	1457	221	1369	2447	3534	3534		1	9606
LALKEDKFPR	Unmodified	1215.6976	0.69755739	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	2	2	0		1				15.034	15.034	3	0.00045957	8824	DP1145_7	132.01	102.24			55886000	1458	655	1370	2448	3535;3536	3535		2	9606
LALQALTEK	Unmodified	985.5808	0.5807963	426	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			17.623	17.623	2	0.031096	12091	DP1145_8	82.75	29.399			20731000	1459	426	1371	2449	3537	3537		0	9606
LAQEPLGLEVDQFLEDVR	Unmodified	2070.0633	0.063335123	730	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	0	3.33	0.471			2	1		23.593	23.593	2;3	2.1358E-151	20812	DP1145_8	225.21	168.05			41456000	1460	730	1372	2450;2451;2452	3538;3539;3540;3541;3542	3538		5	9606
LAQFEPSQR	Unmodified	1074.5458	0.54580778	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					15.532	15.532	2	0.017384	7149	DP1145_6	90.37	45.923			44102000	1461	427	1373	2453	3543	3543		1	9606
LAQFIGNR	Unmodified	917.5083	0.50830006	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			16.242	16.242	2	0.045006	9971	DP1145_8	86.512	56.009			88871000	1462	38	1374	2454	3544	3544		0	9606
LAQQISDEASR	Unmodified	1216.6048	0.60477922	615	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1	0	1					14.846	14.846	2	0.0039922	6003	DP1145_6	109.79	70.167			15017000	1463	615	1375	2455	3545	3545		1	9606
LAQQMENRPSVQAALK	Oxidation (M)	1798.936	0.93596654	779	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	1	1	4	0				1		14.996	14.996	3	0.0026784	7105	DP1145_9	113.25	94.464			308820000	1464	779	1376	2456	3546;3547	3547	641	2	9606
LAQVSPELLLASVR	Unmodified	1494.877	0.87697832	60	O43592	XPOT	Exportin-T	yes	yes	0	0	0	1.5	0.5	1	1				21.313	21.313	2	0.00054183	18319	DP1145_7	117.09	74.753			56787000	1465	60	1377	2457;2458	3548;3549	3549		2	9606
LASIVEQVSVLQNQGR	Unmodified	1739.953	0.95299681	321	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	2	0		1				19.704	19.704	2	0.025888	15935	DP1145_7	91.313	50.598			0	1466	321	1378	2459	3550	3550		1	9606
LASTNSSVLGADLPSSMKEK	Oxidation (M)	2050.0252	0.025235058	451	Q13428	TCOF1	Treacle protein	yes	yes	0	1	1	1	0	1					16.4	16.4	3	0.0071764	8259	DP1145_6	80.733	60.685			47961000	1467	451	1379	2460	3551	3551	423	1	9606
LATLLGLQAPPTR	Unmodified	1349.8031	0.8030851	465	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				19.4	19.4	2	0.0090693	15477	DP1145_7	118.28	69.484			0	1468	465	1380	2461	3552	3552		1	9606
LATQLTGPVMPVR	Oxidation (M)	1397.7701	0.77007041	216	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	1	0	4	0				1		17.122	17.122	2	0.0044958	10397	DP1145_9	90.827	79.676			33333000	1469	216	1381	2462	3553	3553	212	1	9606
LAVCNMDWDR	Oxidation (M)	1294.5434	0.54344129	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	1	0	2	0		1				17.123	17.123	2	0.026264	11960	DP1145_7	72.643	42.834			51506000	1470	688	1382	2463	3554	3554	578	1	9606
LAVHPLLK	Unmodified	889.57492	0.57492306	591	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	3	0			1			15.555	15.555	2	0.0015903	8703	DP1145_8	113.08	81.78			13606000	1471	591	1383	2464	3555	3555		1	9606
LAVNMVPFPR	Oxidation (M)	1158.6219	0.62194961	395;131;460;455;664	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB3;TUBB1;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	1	0	3	1.41	1	1	1	1	1	18.31	18.31	2	5.5707E-61	11913	DP1145_10	195.81	195.81			1985299999.9999998	1472	131;395;460;455;664	1384	2465;2466;2467;2468;2469	3556;3557;3558;3559;3560;3561;3562;3563;3564;3565;3566;3567	3556	123	12	9606
LAVNMVPFPR	Unmodified	1142.627	0.62703499	395;131;460;455;664	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1;Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB3;TUBB1;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	0	3	0			1			19.527	19.527	2	4.5387E-49	14995	DP1145_8	186.09	122.52			0	1473	131;395;460;455;664	1384	2470	3568	3568		1	9606
LCLISTFLEDGIR	Unmodified	1535.8018	0.80176447	47	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	1	0	1					22.679	22.679	2	4.2881E-18	17934	DP1145_6	194.94	155.39			20581000	1474	47	1385	2471	3569;3570	3569		2	9606
LDGLVETPTGYIESLPR	Unmodified	1858.9676	0.96764382	325	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	3	0			1			20.824	20.824	2	4.193E-07	16921	DP1145_8	144.57	115.67			81801000	1475	325	1386	2472	3571	3571		1	9606
LDHKFDLMYAK	Oxidation (M)	1395.6857	0.68567208	393;550;394	P68363;A6NHL2;Q71U36;P0DPH8;P0DPH7;P68366	TUBA1B;TUBAL3;TUBA1A;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	1	1	3	0			2			16.036	16.036	2;3	0.013924	9433	DP1145_8	88.155	69.531			419660000	1476	393;550;394	1387	2473;2474	3572;3573	3572	337	1	9606
LDHKFDLMYAK	Unmodified	1379.6908	0.69075746	393;550;394	P68363;A6NHL2;Q71U36;P0DPH8;P0DPH7;P68366	TUBA1B;TUBAL3;TUBA1A;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	0	1	3	0			2			16.8	16.8	2;3	2.0243E-78	10726	DP1145_8	190.57	144.89			217970000	1477	393;550;394	1387	2475;2476	3574;3575;3576	3576		2	9606
LDIDSPPITAR	Unmodified	1196.6401	0.6401021	171	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	2	1	1		1			17.848	17.848	2	0.015499	10874	DP1145_6	84.213	20.679			34192000	1478	171	1388	2477;2478	3577;3578	3577		2	9606
LDKAQIHDLVLVGGSTR	Unmodified	1821.0108	0.010846043	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			3			17.523	17.523	3;4	4.7106E-12	12038	DP1145_8	142.4	109.89			73001000	1479	148	1389	2479;2480;2481	3579;3580;3581	3579		2	9606
LDKSQIHDIVLVGGSTR	Unmodified	1837.0058	0.005760665	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			17.223	17.223	3	0.014233	11541	DP1145_8	94.922	67.667			202010000	1480	154	1390	2482	3582	3582		1	9606
LDKYYMLIR	Oxidation (M)	1229.6478	0.64783001	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2	0		1				17.102	17.102	2	1.3599E-33	12066	DP1145_7	156.75	90.404			316280000	1481	474	1391	2483	3583	3583	445	0	9606
LDLAGTLPGSK	Unmodified	1070.5972	0.59717465	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					18.155	18.155	2	0.034699	11118	DP1145_6	72.848	32.275			31854000	1482	276	1392	2484	3584	3584		1	9606
LDLLEEK	Unmodified	858.46985	0.46984887	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.554	17.554	2	0.00028966	10343	DP1145_6	120.49	0			493020000	1483	438	1393	2485	3585	3585		1	9606
LDLLGNLPGSK	Unmodified	1125.6394	0.63937381	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1.5	0.5	1	1				19.759	19.759	2	0.016883	13610	DP1145_6	82.831	54.948			140120000	1484	276	1394	2486;2487	3586;3587	3586		2	9606
LDLTENLTGSK	Unmodified	1189.619	0.6190323	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2	0		1				18.099	18.099	2	5.7918E-64	13413	DP1145_7	192.26	126.8			172820000	1485	276	1395	2488	3588;3589	3588		2	9606
LDNASAFQGAVISPHYDSLLVK	Unmodified	2344.2063	0.20631097	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.707	1	2	1			19.859	19.859	2;3	4.3105E-159	16236	DP1145_7	231.21	191.25			2616200000	1486	158	1396	2489;2490;2491;2492	3590;3591;3592;3593;3594;3595;3596	3594		7	9606
LDQPGNLPGSNR	Unmodified	1266.6317	0.63166267	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	0.5		1	1			15.548	15.548	2	8.5987E-63	9376	DP1145_7	180.19	128.02			229860000	1487	276	1397	2493;2494	3597;3598	3597		1	9606
LDQPGNLPGSNRR	Unmodified	1422.7328	0.7327737	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	3	0			1			14.539	14.539	3	0.0062888	7207	DP1145_8	88.803	56.325			11437000	1488	276	1398	2495	3599	3599		0	9606
LDSELKNMQDMVEDYR	2 Oxidation (M)	2016.8769	0.87685626	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	1	1	0	1					16.4	16.4	3	0.0044409	8265	DP1145_6	110.38	86.331		+	65259000	1489	11	1399	2496	3600	3600	7;8	0	9606
LDSSPSVSSTLAAK	Unmodified	1361.7038	0.70382456	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				16.226	16.226	2	0.0080411	10664	DP1145_7	89.561	43.432			156550000	1490	451	1400	2497	3601	3601		1	9606
LDVGNFSWGSECCTR	Unmodified	1786.7403	0.7403032	355	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	19.833	19.833	2	7.3308E-07	14533	DP1145_10	132.14	108.92			54989000	1491	355	1401	2498	3602	3602		1	9606
LDVTLGPVPEIGGSEAPAPQNK	Unmodified	2188.1376	0.1375627	650	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		19.823	19.823	2	7.9393E-07	14706	DP1145_9	127.07	102.51			51609000	1492	650	1402	2499	3603	3603		1	9606
LEAQEQAFLAR	Unmodified	1274.6619	0.66190017	529	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	4	0				1		17.522	17.522	2	0.0035057	11063	DP1145_9	128.27	78.733			98299000	1493	529	1403	2500	3604	3604		1	9606
LEDLNFPEIK	Unmodified	1216.634	0.63395408	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1.5	0.5	1	1				19.559	19.559	2	0.0013461	15782	DP1145_7	125.71	67.483			77668000	1494	777	1404	2501;2502	3605;3606;3607	3607		3	9606
LEIMLEPK	Unmodified	971.53615	0.5361543	685	Q9H2J7	SLC6A15	Sodium-dependent neutral amino acid transporter B(0)AT2	yes	yes	0	0	0	2	0		2				16.319	16.319	2	0.0080585	10728	DP1145_7	101.64	28.027			29304000	1495	685	1405	2503;2504	3608;3609	3608		2	9606
LEPKPQPPVAEATPR	Unmodified	1628.8886	0.88860564	743	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	1	3	0			1			14.916	14.916	3	0.020601	7784	DP1145_8	84.759	49.861			23944000	1496	743	1406	2505	3610	3610		0	9606
LEQGQAIDDLMPAQK	Oxidation (M)	1671.8138	0.81378572	164	P12277	CKB	Creatine kinase B-type	yes	yes	0	1	0	5	0					1	16.969	16.969	2	0.00091153	10072	DP1145_10	113.95	74.098			55055000	1497	164	1407	2506	3611	3611	174	1	9606
LEQQVPVNQVFGQDEMIDVIGVTK	Unmodified	2685.3684	0.36836727	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	0	1					21.87	21.87	3	0.0015194	16788	DP1145_6	67.217	45.375			4463400	1498	257	1408	2507	3612	3612		1	9606
LESEGSPETLTNLR	Unmodified	1544.7682	0.76821574	732	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	0	1					17.554	17.554	2	1.7117E-72	10246	DP1145_6	189.57	146.49			64145000	1499	732	1409	2508	3613;3614	3614		2	9606
LESLNIQR	Unmodified	971.53999	0.53999412	465	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				16.319	16.319	2	1.2687E-32	10638	DP1145_7	173.59	62.557			29304000	1500	465	1410	2509	3615	3615		1	9606
LETHMTPEMFR	2 Oxidation (M)	1422.6272	0.62717092	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	2	0	1	0	1					14.751	14.751	3	0.03968	5690	DP1145_6	43.604	27.664			10591000	1501	427	1411	2510	3616	3616	377;378	0	9606
LEVAPISDIIAIK	Unmodified	1380.8228	0.82281749	169	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	4	0				1		21.11	21.11	2	0.015629	16475	DP1145_9	84.687	44.814			10543000	1502	169	1412	2511	3617	3617		1	9606
LEVATLK	Unmodified	772.46945	0.46945494	672	Q9BXX2	ANKRD30B	Ankyrin repeat domain-containing protein 30B	yes	yes	0	0	0	4	0				1		19.823	19.823	1	0.0075425	14482	DP1145_9	101.21	29.834			166040000	1503	672	1413	2512	3618	3618		0	9606
LFADAVQELLPQYK	Unmodified	1633.8716	0.87155859	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				21.941	21.941	2	1.4177E-143	19096	DP1145_7	229	155.16			32704000	1504	236	1414	2513	3619;3620	3619		2	9606
LFCVGFTK	Unmodified	970.49462	0.49462383	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		18.623	18.623	2	0.00088331	12734	DP1145_9	130.04	83.376			51586000	1505	341	1415	2514	3621;3622;3623	3622		3	9606
LFDQAFGLPR	Unmodified	1162.6135	0.61349341	111	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	20.133	20.133	2	0.0053625	14943	DP1145_10	109.48	75.292			73836000	1506	111	1416	2515	3624;3625	3625		2	9606
LFEGNALLR	Unmodified	1031.5764	0.57637963	281	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	18.648	18.648	2	1.4252E-16	12620	DP1145_10	158.12	81.059			226790000	1507	281	1417	2516	3626	3626		1	9606
LFEYGGFPPESNYLFLGDYVDR	Unmodified	2597.2115	0.21145592	251	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	no	0	0	0	3.5	0.5			3	3		23.753	23.753	2;3	1.1436E-21	19986	DP1145_9	169.15	125.55			106830000	1508	251	1418	2517;2518;2519;2520;2521;2522	3627;3628;3629;3630;3631;3632;3633;3634;3635;3636;3637;3638;3639;3640	3633		14	9606
LFFVGSR	Unmodified	824.45447	0.45447358	414	Q01650;Q9UM01;Q92536	SLC7A5;SLC7A7;SLC7A6	Large neutral amino acids transporter small subunit 1;Y+L amino acid transporter 1;Y+L amino acid transporter 2	yes	no	0	0	0	1	0	1					18.655	18.655	2	0.00011796	11901	DP1145_6	132.94	44.314			5499600	1509	414	1419	2523	3641	3641		1	9606
LFHEVVQAFR	Unmodified	1244.6666	0.66659162	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	2	0		1				18.137	18.137	3	0.030348	13698	DP1145_7	52.725	25.244			35204000	1510	777	1420	2524	3642	3642		1	9606
LFIGGLSFETTDESLR	Unmodified	1783.8992	0.89922991	143	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		21.674	21.674	2	1.7427E-221	17191	DP1145_9	258.01	205.52			54982000	1511	143	1421	2525	3643;3644	3643		2	9606
LFIGNLPR	Unmodified	928.54944	0.54943659	651	Q9BQ04;Q9BWF3	RBM4B;RBM4	RNA-binding protein 4B;RNA-binding protein 4	yes	no	0	0	0	4	0				1		18.625	18.625	2	0.015289	12885	DP1145_9	94.163	11.901			46333000	1512	651	1422	2526	3645	3645		1	9606
LFIYNPTTGEFLGR	Unmodified	1626.8406	0.84059282	320	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	4	0				1		21.529	21.529	2	0.0056446	16815	DP1145_9	94.465	47.205			14907000	1513	320	1423	2527	3646	3646		1	9606
LFLQGPK	Unmodified	801.47487	0.47487467	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				16.899	16.899	1;2	0.00014007	11654	DP1145_7	129.96	37.77			1072999999.9999999	1514	158	1424	2528;2529	3647;3648	3647		2	9606
LFLVNNK	Unmodified	846.49634	0.49633839	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		17.223	17.223	2	5.8221E-07	10509	DP1145_9	126.68	41.316			212510000	1515	497	1425	2530	3649	3649		0	9606
LFNLSKEDDVR	Unmodified	1334.683	0.68302954	370	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	1	4	0				1		16.823	16.823	3	3.927E-08	9888	DP1145_9	115.23	80.054			60661000	1516	370	1426	2531	3650	3650		0	9606
LFPDTPLALDANK	Unmodified	1413.7504	0.75038083	436	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	2	0		1				19.864	19.864	2	0.026807	16294	DP1145_7	75.566	31.915			17181000	1517	436	1427	2532	3651;3652	3652		2	9606
LFQLPTPPLSR	Unmodified	1267.7289	0.72885752	789	Q9Y6K0	CEPT1	Choline/ethanolaminephosphotransferase 1	yes	yes	0	0	0	1	0	1					20.155	20.155	2	0.0057163	14280	DP1145_6	96.034	70.46			16067000	1518	789	1428	2533	3653;3654	3654		2	9606
LFVGGIKEDTEEHHLR	Unmodified	1878.9588	0.95881047	201	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	4	0				3		15.577	15.577	2;3;4	2.2871E-18	7947	DP1145_9	145.81	0			691970000	1519	201	1429	2534;2535;2536	3655;3656;3657;3658	3658		3	9606
LFVSDGVPGCLPVLAAAGR	Unmodified	1898.0084	0.0084032019	330	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				21.429	21.429	2	0.006306	18475	DP1145_7	92.856	56.329			8610900	1520	330	1430	2537	3659	3659		1	9606
LFYADHPFIFLVR	Unmodified	1636.8766	0.87658439	299	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	4	0				1		21.579	21.579	2	7.2003E-05	17130	DP1145_9	120.09	68.164			4347000	1521	299	1431	2538	3660	3660		1	9606
LGADFIGR	Unmodified	847.4552	0.45520186	97	O95490	LPHN2	Latrophilin-2	yes	yes	0	0	0	5	0					1	18.038	18.038	2	0.0032177	11636	DP1145_10	124.37	61.395			0	1522	97	1432	2539	3661	3661		1	9606
LGAGEGGEASVSPEK	Unmodified	1386.6627	0.66268803	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.694	14.694	2	7.4756E-89	5842	DP1145_6	205.07	169.8			103460000	1523	451	1433	2540;2541;2542;2543	3662;3663;3664;3665	3662		4	9606
LGAVFNQVAFPLQYTPR	Unmodified	1920.0258	0.025767826	494	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	0	1					21.567	21.567	2	9.1231E-47	16305	DP1145_6	174.21	115.7			14890000	1524	494	1434	2544	3666	3666		1	9606
LGEHNIDVLEGNEQFINAAK	Unmodified	2210.0968	0.096760517	6	CON__P00761			yes	yes	0	0	0	2.83	1.34	1	2	1	1	1	22.066	22.066	2;3	2.3651E-141	13528	DP1145_9	206.45	157.12		+	12020000000	1525	6	1435	2545;2546;2547;2548;2549;2550	3667;3668;3669;3670;3671;3672;3673;3674;3675;3676	3676		9	
LGEWVGLCK	Unmodified	1060.5376	0.53755128	213	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	18.648	18.648	2	6.5872E-20	12537	DP1145_10	143.61	143.61			99089000	1526	213	1436	2551	3677	3677		0	9606
LGEYGFQNALIVR	Unmodified	1478.7882	0.78816332	10	CON__P02769			yes	yes	0	0	0	3	0			1			20.024	20.024	2	2.6882E-11	15878	DP1145_8	137.98	103.89		+	107150000	1527	10	1437	2552	3678	3678		1	
LGFAGLVQEISFGTTK	Unmodified	1666.893	0.89302232	288	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			22.597	22.597	2	0.0093007	19544	DP1145_8	101.56	80.183			14728000	1528	288	1438	2553	3679	3679		1	9606
LGFSEVELVQMVVDGVK	Oxidation (M)	1863.9652	0.96520098	164	P12277	CKB	Creatine kinase B-type	yes	yes	0	1	0	4	0				1		23.024	23.024	2	0.0013369	19197	DP1145_9	115.37	79.877			5348500	1529	164	1439	2554	3680;3681	3680	175	2	9606
LGGIGQFLAK	Unmodified	1002.5862	0.58621603	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				19.105	19.105	2	1.4142E-05	12647	DP1145_6	113.5	62.533			80597000	1530	427	1440	2555;2556	3682;3683	3682		0	9606
LGGIPVGVVAVETR	Unmodified	1365.798	0.79799972	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.155	19.155	2	0.024826	12853	DP1145_6	82.171	54.917			1972199999.9999998	1531	438	1441	2557	3684	3684		1	9606
LGLDYEER	Unmodified	993.47673	0.47672516	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		16.923	16.923	2	3.6268E-44	10169	DP1145_9	187.63	95.167			75405000	1532	646	1442	2558	3685	3685		1	9606
LGLPGDEVDNKVK	Unmodified	1382.7405	0.74054442	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	2					16.079	16.079	2;3	0.00029114	7847	DP1145_6	146.11	82.923			152890000	1533	401	1443	2559;2560	3686;3687;3688;3689	3689		4	9606
LGNGINIIVATPGR	Unmodified	1393.8041	0.80414773	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			18.883	18.883	2	0.021501	13910	DP1145_8	84.507	51.279			18656000	1534	719	1444	2561	3690	3690		0	9606
LGNPIVPLNIR	Unmodified	1204.7292	0.72919187	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.155	19.155	2	0.009463	12661	DP1145_6	91.069	59.198			81026000	1535	401	1445	2562	3691	3691		1	9606
LGNTTVICGVK	Unmodified	1160.6223	0.62234354	618	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				1		16.059	16.059	2	4.8378E-08	8708	DP1145_9	140.11	90.671			69659000	1536	618	1446	2563	3692;3693;3694	3692		3	9606
LGQASLGVIK	Unmodified	984.59678	0.59678072	599	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	2	0		1				16.798	16.798	2	0.0029183	11468	DP1145_7	120.87	38.628			188050000	1537	599	1447	2564	3695	3695		1	9606
LGTEPTSETQDELQR	Unmodified	1702.801	0.80097243	50	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	2	0		1				15.993	15.993	2	1.0065E-15	10157	DP1145_7	150.09	92.538			0	1538	50	1448	2565	3696	3696		1	9606
LGTPELSTAER	Unmodified	1172.6037	0.60371659	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			16.098	16.098	2	2.9067999999999996E-19	9606	DP1145_8	156.35	119.95			2006899999.9999998	1539	438	1449	2566;2567;2568	3697;3698;3699;3700;3701	3700		5	9606
LGTPELSTAERK	Unmodified	1300.6987	0.69867961	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	3	2	1				1	14.821	14.821	3	4.9842E-11	5991	DP1145_6	143	106.48			73423000	1540	438	1450	2569;2570	3702;3703;3704	3703		2	9606
LGVQTVAVYSEADR	Unmodified	1506.7678	0.7678218	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			17.911	17.911	2	0.00096411	13342	DP1145_7	113.69	90.314			960360000	1541	639	1451	2571;2572	3705;3706;3707	3705		3	9606
LGVTNTIISHYDGR	Unmodified	1544.7947	0.79470526	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				17.699	17.699	3	4.9184E-05	12831	DP1145_7	120.55	86.05			68268000	1542	277	1452	2573	3708	3708		1	9606
LGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR	Unmodified	4114.0872	0.087205469	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.5		1	1			28.667	28.667	3;4	2.3529E-26	16307	DP1145_8	86.47	73.697			545420000	1543	474	1453	2574;2575	3709;3710;3711	3711		2	9606
LGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRR	Unmodified	4270.1883	0.1883165	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				19.634	19.634	4	0.017697	15613	DP1145_7	30.425	17.653			104240000	1544	474	1454	2576	3712;3713	3712		2	9606
LHFFMPGFAPLTSR	Oxidation (M)	1635.8232	0.82316861	395;131;460;664	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	1	0	3.8	0.748			2	2	1	19.818	19.818	2;3	1.1165E-45	15441	DP1145_8	175.65	117.76			1264500000	1545	131;395;460;664	1455	2577;2578;2579;2580;2581	3714;3715;3716;3717;3718;3719;3720;3721;3722	3717	124	9	9606
LHFFMPGFAPLTSR	Unmodified	1619.8283	0.82825399	395;131;460;664	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	0	3.5	0.5			2	2		21.066	21.066	2;3	3.4952E-07	16389	DP1145_9	161.51	70.685			1364700000	1546	131;395;460;664	1455	2582;2583;2584;2585	3723;3724;3725;3726;3727;3728	3728		6	9606
LHGVNINVEASK	Unmodified	1279.6884	0.68844927	651	Q9BQ04;Q9BWF3	RBM4B;RBM4	RNA-binding protein 4B;RNA-binding protein 4	yes	no	0	0	0	4	0				1		15.473	15.473	3	0.0031803	7862	DP1145_9	74.611	38.29			57615000	1547	651	1456	2586	3729	3729		1	9606
LHLSGIDANPNALFPPVEFPAPR	Unmodified	2471.2961	0.29612903	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					21.386	21.386	3	1.6345E-55	16025	DP1145_6	180.04	157.63			14326000	1548	290	1457	2587	3730;3731	3730		2	9606
LHNAIEGGTQLSR	Unmodified	1394.7266	0.72662569	67	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	3	0			1			14.731	14.731	3	0.0023862	7602	DP1145_8	89.43	42.203			51434000	1549	67	1458	2588	3732	3732		1	9606
LHPEMSNLDLTK	Oxidation (M)	1412.697	0.69696505	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	1	0	2	0		1				15.297	15.297	3	0.0080632	9040	DP1145_7	75.088	52.759			128640000	1550	184	1459	2589	3733	3733	182	1	9606
LHTKPSQAPAVEVAPAGASYNPSFEDHQTLLSAAHEVELQR	Unmodified	4395.1884	0.18837608	730	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	1	3	0			2			18.523	18.523	5;6	1.883E-10	13471	DP1145_8	60.595	49.278			227030000	1551	730	1460	2590;2591	3734;3735	3734		2	9606
LHVDPENFR	Unmodified	1125.5567	0.55670682	21	CON__Q3SX09;P68871;P02042	HBB;HBD	Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta	yes	no	0	0	0	4	0				1		16.035	16.035	2	0.0032069	8897	DP1145_9	101.33	62.074		+	549920000	1552	21	1461	2592	3736	3736		1	9606
LHYNEGLNIK	Unmodified	1199.6299	0.62987176	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		15.778	15.778	2	3.4717E-05	8432	DP1145_9	155.07	94.631			732570000	1553	268	1462	2593	3737;3738	3738		2	9606
LIADVAPSAIR	Unmodified	1124.6554	0.65535823	258	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	4	0				1		17.522	17.522	2	0.013978	11037	DP1145_9	85.731	25.141			29891000	1554	258	1463	2594	3739	3739		1	9606
LIAHAGSLTNLAK	Unmodified	1307.7561	0.75613491	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			2			16.093	16.093	2;3	7.5554E-07	9635	DP1145_8	128.88	98.083			372060000	1555	38	1464	2595;2596	3740;3741;3742;3743;3744	3743		5	9606
LIALLEVLSQK	Unmodified	1225.7646	0.76457433	199	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	yes	no	0	0	0	1	0	1					22.413	22.413	2	0.019029	17567	DP1145_6	80.688	40.687			3561700	1556	199	1465	2597	3745	3745		1	9606
LIALSIDSVEDHLAWSK	Unmodified	1895.9993	0.9992783	227	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	5	0					1	21.099	21.099	3	0.0055857	16213	DP1145_10	101.2	76.64			13565000	1557	227	1466	2598	3746	3746		1	9606
LIDFLECGK	Unmodified	1093.5478	0.54778161	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.624	19.624	2	0.010838	15037	DP1145_8	95.815	39.094			404830000	1558	186	1467	2599	3747	3747		0	9606
LIDLHSPSEIVK	Unmodified	1349.7555	0.7554662	339	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					2	17.447	17.447	2;3	3.8927E-23	10677	DP1145_10	173.37	100.12			261150000	1559	339	1468	2600;2601	3748;3749;3750	3748		2	9606
LIDWGLAEFYHPAQEYNVR	Unmodified	2320.1277	0.12766671	195	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	4	0				1		21.31	21.31	3	0.01647	16642	DP1145_9	83.253	61.201			8159000	1560	195	1469	2602	3751	3751		1	9606
LIETYFSK	Unmodified	999.5277	0.5276981	335	P60201	PLP1	Myelin proteolipid protein	yes	yes	0	0	0	3.5	1.5		1			1	17.917	17.917	2	0.0004526	11437	DP1145_10	133.81	75.031			139770000	1561	335	1470	2603;2604	3752;3753;3754	3752		3	9606
LIEVDDER	Unmodified	987.48729	0.48728985	370	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	3	1.41	1			2		15.732	15.732	2	3.2725E-26	8187	DP1145_9	166.78	99.789			47737000	1562	370	1471	2605;2606;2607	3755;3756;3757	3757		3	9606
LIGEYGLR	Unmodified	919.51272	0.51271674	281	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	5	0					1	17.447	17.447	2	5.129300000000001E-57	10780	DP1145_10	191.91	110.92			672480000	1563	281	1472	2608	3758	3758		1	9606
LIGQIVSSITASLR	Unmodified	1456.8613	0.86132826	550	Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1A;TUBA3E	Tubulin alpha-1A chain;Tubulin alpha-3E chain	yes	no	0	0	0	3	0			1			22.597	22.597	2	4.0167E-17	19405	DP1145_8	177.57	116.41			20450000	1564	550	1473	2609	3759	3759		1	9606
LIINELSNVMEANAAR	Unmodified	1756.9142	0.91416847	635	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	2	0		1				21.169	21.169	2	0.0013525	18042	DP1145_7	118.61	77.443			0	1565	635	1474	2610	3760	3760		1	9606
LIIVEGCQR	Unmodified	1086.5856	0.5855641	112;167	P05023;P13637;P50993;Q13733;P54707	ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2	no	no	0	0	0	3.33	1.7	1			1	1	16.437	16.437	2	1.5486E-08	9108	DP1145_10	127.12	64.459			152580000	1566	112;167	1475	2611;2612;2613	3761;3762;3763;3764	3761		2	9606
LILIESR	Unmodified	842.52255	0.52255314	362	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	17.447	17.447	2	1.8716E-16	10761	DP1145_10	138.48	51.545			216170000	1567	362	1476	2614	3765	3765		0	9606
LILWYFEHQLK	Unmodified	1488.8129	0.8129215	421	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	3	0			1			20.809	20.809	3	0.039169	16831	DP1145_8	72.321	58.149			0	1568	421	1477	2615	3766	3766		1	9606
LIPDGCGVK	Unmodified	957.49535	0.49535211	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	5	0					1	15.196	15.196	2	0.034179	7200	DP1145_10	79.451	38.878			86224000	1569	220	1478	2616	3767	3767		1	9606
LIPDSIGKDIEK	Unmodified	1326.7395	0.73948179	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				2		16.823	16.823	2;3	8.091699999999999E-21	9966	DP1145_9	125.23	34.139			519700000	1570	341	1479	2617;2618	3768;3769;3770	3770		2	9606
LIPLLLSSLNDEVPEVR	Unmodified	1906.0775	0.077528625	571	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	2	0		1				22.706	22.706	2	0.00071291	20402	DP1145_7	143.42	122.42			4205000	1571	571	1480	2619	3771	3771		1	9606
LISQIQPEVDRER	Unmodified	1581.8475	0.84746911	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	1	2	0		1				15.998	15.998	3	0.00081698	10114	DP1145_7	116.01	75.495			410240000	1572	714	1481	2620	3772;3773	3772		2	9606
LISQIVSSITASLR	Unmodified	1486.8719	0.87189295	393;394	P68363;Q9H853;P68366	TUBA1B;TUBA4B;TUBA4A	Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain	no	no	0	0	0	3	1.41	1		2		1	22.999	22.999	2;3	6.2201E-144	19950	DP1145_8	267.85	239.15			310330000	1573	393;394	1482	2621;2622;2623;2624	3774;3775;3776;3777;3778;3779;3780;3781	3778		8	9606
LISSDGHEFIVKR	Unmodified	1499.8096	0.80962704	492	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	1	5	0					1	15.713	15.713	3	9.8549E-14	8060	DP1145_10	138.76	70.407			17308000	1574	492	1483	2625	3782	3782		0	9606
LISWYDNEFGYSNR	Unmodified	1762.7951	0.79509919	109	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	4	0				1		20.618	20.618	2	0	15725	DP1145_9	315.72	245.32			27976000	1575	109	1484	2626	3783;3784	3783		2	9606
LITGLGVGR	Unmodified	884.54435	0.54435122	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				17.099	17.099	2	0.01384	12089	DP1145_7	91.9	15.866			79497000	1576	655	1485	2627	3785	3785		1	9606
LITPAVVSER	Unmodified	1083.6288	0.62880913	376	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	5	0					1	16.969	16.969	2	0.0011742	9986	DP1145_10	126.24	58.262			144830000	1577	376	1486	2628	3786;3787	3787		2	9606
LITQTFSHHNQLAQK	Unmodified	1764.9271	0.92711641	764	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		14.895	14.895	3	0.010545	7073	DP1145_9	86.803	61.273			75647000	1578	764	1487	2629	3788	3788		1	9606
LITYGSDRTEALKR	Unmodified	1621.8788	0.87876924	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	2	3	0			1			14.978	14.978	3	0.017595	7854	DP1145_8	74.698	37.717			42061000	1579	115	1488	2630	3789	3789		0	9606
LKETGYVVERPSTTK	Unmodified	1706.9203	0.9202997	725	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	2	0		1				14.431	14.431	4	0.027674	7773	DP1145_7	81.128	48.833			48426000	1580	725	1489	2631	3790	3790		1	9606
LKGQDPGAPQLQSESKPPK	Unmodified	2004.064	0.064003825	529	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	2	3.5	0.5			2	2		14.104	14.104	3;4	1.846E-111	6583	DP1145_8	214.46	177.93			166470000	1581	529	1490	2632;2633;2634;2635	3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802	3796		12	9606
LKGSGNLEAIHIIK	Unmodified	1491.8773	0.87731267	400	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	3	0			1			16.278	16.278	3	0.032038	9914	DP1145_8	96.371	59.74			10659000	1582	400	1491	2636	3803	3803		0	9606
LKLEPHEGLLLR	Unmodified	1416.8453	0.84528426	135	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	3	0			1			17.023	17.023	3	4.7177E-05	11148	DP1145_8	118.77	65.643			145360000	1583	135	1492	2637	3804	3804		0	9606
LKPDPNTLCDEFKADEK	Unmodified	2018.9619	0.96190652	10	CON__P02769			yes	yes	0	0	2	3	0			1			17.15	17.15	3	0.040758	11481	DP1145_8	68.41	39.541		+	47310000	1584	10	1493	2638	3805	3805		0	
LKSDVALEVPPKR	Unmodified	1450.8508	0.85076357	714	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	2	2	0		1				14.725	14.725	3	0.027013	8298	DP1145_7	70.438	49.085			23722000	1585	714	1494	2639	3806	3806		0	9606
LKVPPAINQFTQALDR	Unmodified	1810.0101	0.010117761	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		20.024	20.024	3	7.1721E-35	14862	DP1145_9	173.19	109.88			317810000	1586	366	1495	2640	3807;3808	3808		2	9606
LKYENEVALR	Unmodified	1233.6717	0.67173657	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	3	2	1				1	15.723	15.723	3	0.003061	7370	DP1145_6	123.51	86.829		+	81774000	1587	15	1496	2641;2642	3809;3810	3810		1	9606
LLACIASR	Unmodified	902.50077	0.50077184	355	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	16.269	16.269	2	1.7789E-16	8827	DP1145_10	162.31	70.115			84859000	1588	355	1497	2643	3811;3812	3811		2	9606
LLALNSLYSPK	Unmodified	1217.702	0.70197407	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.455	19.455	2	0.030558	12997	DP1145_6	74.376	44.903			73809000	1589	401	1498	2644	3813	3813		1	9606
LLATATANGHGLK	Unmodified	1265.7092	0.70918471	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	1	0	1					14.636	14.636	3	0.041092	5673	DP1145_6	66.538	15.286			0	1590	735	1499	2645	3814	3814		1	9606
LLDAVDTYIPVPAR	Unmodified	1541.8453	0.84534384	292	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		20.325	20.325	2	0.016882	16317	DP1145_8	108.7	74.736			35946000	1591	292	1500	2646;2647	3815;3816	3815		2	9606
LLECHFMPPEK	Oxidation (M)	1415.6577	0.65774277	675	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	1	0	4	0				1		16.096	16.096	3	0.029789	8791	DP1145_9	59.84	36.325			29665000	1592	675	1501	2648	3817	3817	572	1	9606
LLEEIHAMK	Unmodified	1082.5794	0.57941609	591	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	3	0			1			16.44	16.44	2	0.011034	9982	DP1145_8	98.523	86.568			29339000	1593	591	1502	2649	3818	3818		0	9606
LLEMTSR	Oxidation (M)	864.4375	0.43750288	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2	0		1				13.587	13.587	2	0.044931	6799	DP1145_7	73.975	18.471			5287700	1594	474	1503	2650	3819	3819	446	1	9606
LLEPVLLLGK	Unmodified	1093.7111	0.71108219	357	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	3	2	1				1	20.975	20.975	2	0.0024902	16000	DP1145_10	122.19	78.418			83578000	1595	357	1504	2651;2652	3820;3821	3820		2	9606
LLEQQELR	Unmodified	1027.5662	0.56620887	660	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					15.52	15.52	2	0.040032	7512	DP1145_6	87.323	10.548			36680000	1596	660	1505	2653	3822	3822		1	9606
LLETESFQMNR	Oxidation (M)	1382.65	0.65001485	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					16.818	16.818	2	1.7925E-200	9012	DP1145_6	254.98	207.32			477470000	1597	438	1506	2654	3823	3823	395	1	9606
LLETESFQMNR	Unmodified	1366.6551	0.65510023	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.155	18.155	2	4.3254E-20	11222	DP1145_6	162.49	132.18			194260000	1598	438	1506	2655	3824;3825	3824		2	9606
LLETTDRPDGHQNNLR	Unmodified	1877.9344	0.93438664	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	2	0		1				14.531	14.531	4	0.0029482	7998	DP1145_7	106.32	91.923			37797000	1599	478	1507	2656	3826	3826		1	9606
LLGAALPLLTK	Unmodified	1108.722	0.72198123	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1.5	0.5	1	1				20.41	20.41	2	0.0030102	17061	DP1145_7	106.88	83.112			46601000	1600	655	1508	2657;2658	3827;3828;3829	3829		3	9606
LLGASELPIVTPALR	Unmodified	1548.9239	0.92392852	308	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			20.725	20.725	2	0.014717	16868	DP1145_8	105.2	85.442			64746000	1601	308	1509	2659	3830	3830		1	9606
LLGGFQETCSK	Unmodified	1238.5965	0.59652272	668	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	3	0			1			16.823	16.823	2	0.0035929	10876	DP1145_8	114.5	90.541			11697000	1602	668	1510	2660	3831	3831		1	9606
LLGGHNEDLPSNR	Unmodified	1420.7059	0.70589025	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3.5	1.5		1			1	15.028	15.028	3	0.0015989	6886	DP1145_10	106.17	53.385			376550000	1603	656	1511	2661;2662	3832;3833	3832		2	9606
LLGLGSASGSVGR	Unmodified	1172.6513	0.65133548	663	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	4	0				1		17.722	17.722	2	1.6554E-38	11409	DP1145_9	169.76	112.71			93390000	1604	663	1512	2663	3834	3834		0	9606
LLGLLFPLLAR	Unmodified	1224.7958	0.79581488	597	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	2	0		1				24.334	24.334	2	0.0044367	22720	DP1145_7	98.392	67.822			2761700	1605	597	1513	2664	3835;3836	3836		2	9606
LLGLYHTMDK	Oxidation (M)	1205.6114	0.6114445	480	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	1	0	5	0					1	19.455	19.455	2	0.0092499	13649	DP1145_10	87.696	41.306			7291100	1606	480	1514	2665	3837	3837	454	0	9606
LLGQFTLIGIPPAPR	Unmodified	1591.945	0.94499831	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.724	21.724	2	0	18116	DP1145_8	303.31	270.79			108670000	1607	254	1515	2666	3838;3839;3840;3841;3842	3838		5	9606
LLHYLGHVMVNGPTTPIPVK	Oxidation (M)	2201.2031	0.20308026	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.707	1	2	1			17.857	17.857	3;4	0.00081287	13080	DP1145_7	91.657	49.744			842990000	1608	158	1516	2667;2668;2669;2670	3843;3844;3845;3846;3847;3848;3849	3844	167	6	9606
LLHYLGHVMVNGPTTPIPVK	Unmodified	2185.2082	0.20816564	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		2				18.497	18.497	3;4	5.912399999999999E-28	14180	DP1145_7	143.67	121.03			401140000	1609	158	1516	2671;2672	3850;3851;3852	3850		3	9606
LLLEDLVK	Unmodified	941.57973	0.57973367	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				20.31	20.31	2	4.8222E-57	16839	DP1145_7	192.28	91.539			330240000	1610	438	1517	2673;2674	3853;3854;3855;3856	3855		4	9606
LLLPGELAK	Unmodified	952.59572	0.59571809	128;66	Q8N257;Q16778;P33778;P23527;P06899;A0A2R8Y619;Q96A08;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814	HIST3H2BB;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BA;HIST1H2BL;HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK	Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-A;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K	no	no	0	0	0	4.5	0.5				1	1	18.535	18.535	2	0.0045587	12486	DP1145_10	113.41	20.945			5098000000	1611	128;66	1518	2675;2676	3857;3858;3859	3857		3	9606
LLLPVAEYFSGVQLPPHLSPFVTEK	Unmodified	2780.5153	0.5152895	35	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			23.1	23.1	3	4.2709E-14	20221	DP1145_8	136.02	124.06			13609000	1612	35	1519	2677	3860	3860		1	9606
LLLPWLEAR	Unmodified	1109.6597	0.65971533	411	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					22.097	22.097	2	0.0050601	17071	DP1145_6	119.41	119.41			16189000	1613	411	1520	2678	3861;3862	3862		2	9606
LLLQVQHASK	Unmodified	1135.6713	0.67134264	114;162	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	2.75	1.79	2			1	1	15.119	15.119	2;3	5.9054E-12	6538	DP1145_6	153.08	39.194			460490000	1614	114;162	1521	2679;2680;2681;2682	3863;3864;3865;3866;3867	3865		5	9606
LLMMAGIDDCYTSAR	2 Oxidation (M)	1747.7579	0.7579271	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	2	0	4	0				1		17.522	17.522	2	0.008739	11040	DP1145_9	99.539	59.69			20983000	1615	173	1522	2683	3868	3868	177;178	0	9606
LLMSGGGGYLLSGFTVAMDNLK	Oxidation (M)	2259.1279	0.12792599	749	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	1	0	1	0	1					19.801	19.801	3	0.04205	13791	DP1145_6	40.759	15.841			25257000	1616	749	1523	2684	3869	3869	618	1	9606
LLNFLMK	Oxidation (M)	893.50446	0.50446024	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					18.955	18.955	2	0.033739	12397	DP1145_6	91.093	20.027			18210000	1617	401	1524	2685	3870	3870	350	0	9606
LLPYEQSSLLELIK	Unmodified	1644.9338	0.9338245	511	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	1	0	1					22.237	22.237	2	0.010075	17278	DP1145_6	109.16	66.681			0	1618	511	1525	2686	3871	3871		1	9606
LLQAFLER	Unmodified	988.57057	0.57056597	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				18.996	18.996	2	0.01208	14872	DP1145_7	96.492	31.688			41917000	1619	322	1526	2687	3872	3872		1	9606
LLQDFFNGK	Unmodified	1080.5604	0.56039521	154;181	P17066;P11142;P54652	HSPA6;HSPA8;HSPA2	Heat shock 70 kDa protein 6;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3	0			1			19.724	19.724	2	1.4911000000000001E-24	15302	DP1145_8	166.05	111.85			139830000	1620	181;154	1527	2688	3873	3873		1	9606
LLQDFFNGR	Unmodified	1108.5665	0.56654322	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3.5	0.5			1	1		19.824	19.824	2	4.0902E-11	15579	DP1145_8	153.73	100.79			488180000	1621	148	1528	2689;2690	3874;3875;3876	3874		3	9606
LLQLVEDR	Unmodified	984.5604	0.56039521	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			17.723	17.723	2	0.014786	12401	DP1145_8	94.302	25.105			610990000	1622	186	1529	2691	3877	3877		1	9606
LLQQEEEIK	Unmodified	1128.6027	0.60265396	319	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	0	1					15.62	15.62	2	0.020312	7174	DP1145_6	90.37	37.018			7887500	1623	319	1530	2692	3878	3878		0	9606
LLQTDDEEEAGLLELLK	Unmodified	1927.999	0.99900353	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	1	0	1					22.679	22.679	2	1.3794E-91	17979	DP1145_6	206.45	139.24			4027400	1624	322	1531	2693	3879	3879		1	9606
LLSDATVEKDESHAGK	Unmodified	1698.8424	0.84244331	469	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	1	4	0				2		14.375	14.375	3;4	0.00019098	6170	DP1145_9	148.18	114.87			205340000	1625	469	1532	2694;2695	3880;3881	3880		2	9606
LLSMLDDVPK	Oxidation (M)	1145.6002	0.60021112	791				yes	yes	0	1	0	1	0	1					17.657	17.657	2	0.0041447	10344	DP1145_6	113.41	52.73	+		552600000	1626	791	1533	2696	3882;3883;3884	3883	647	3	9606
LLSSFDFFLTDAR	Unmodified	1530.7718	0.77184455	85	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	3	0			1			22.96	22.96	2	2.1915E-05	19813	DP1145_8	121.36	78.276			3995300	1627	85	1534	2697	3885	3885		1	9606
LLSTDAEAVSTR	Unmodified	1261.6514	0.65139506	499	Q15545	TAF7	Transcription initiation factor TFIID subunit 7	yes	yes	0	0	0	3	0			1			16.076	16.076	2	0.0033307	9665	DP1145_8	105.86	68.672			35574000	1628	499	1535	2698	3886	3886		0	9606
LLTQYILNLGK	Unmodified	1274.7598	0.7598233	28	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	2	0		1				21.062	21.062	2	0.0034245	17994	DP1145_7	114.89	78.47			34717000	1629	28	1536	2699	3887	3887		1	9606
LLTSFLPAQLLR	Unmodified	1370.8286	0.82857157	135	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	0.816	1	1	1			22.206	22.206	2	9.363499999999999E-43	18825	DP1145_8	173.39	122.33			186760000	1630	135	1537	2700;2701;2702	3888;3889;3890;3891;3892	3891		5	9606
LLTWVIGTGSPR	Unmodified	1298.7347	0.73467118	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					20.055	20.055	2	0.0096177	14258	DP1145_6	88.496	53.963			9170700	1631	608	1538	2703	3893	3893		1	9606
LLVPEIDEVMR	Oxidation (M)	1328.701	0.70098779	84	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	2	0		1				16.798	16.798	2	0.034731	11507	DP1145_7	66.621	8.188			75743000	1632	84	1539	2704	3894	3894	66	1	9606
LLVPLVPDLQDVAQLR	Unmodified	1788.0509	0.050919944	661	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	2	0		1				22.995	22.995	2	1.2647E-12	20722	DP1145_7	146.16	117.54			3358600	1633	661	1540	2705	3895	3895		1	9606
LLVPTQFVGAIIGK	Unmodified	1454.8861	0.88608645	32	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	3	0			1			22.411	22.411	2	0.00081439	18863	DP1145_8	114.89	0			44784000	1634	32	1541	2706	3896;3897;3898	3896		3	9606
LLYAFAEATVPK	Unmodified	1321.7282	0.72818882	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	19.734	19.734	2	0.00021999	14206	DP1145_10	130.41	55.2			1431200000	1635	116	1542	2707;2708;2709;2710	3899;3900;3901;3902;3903;3904	3899		6	9606
LLYGESPWGVTPISFETPSNPPLAR	Unmodified	2727.3908	0.39081727	41	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.543	22.543	3	7.7421E-36	17748	DP1145_6	155.54	127.58			6097500	1636	41	1543	2711	3905;3906	3906		2	9606
LMALYVASHYK	Oxidation (M)	1310.6693	0.66929373	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	1	0	2	0		1				16.558	16.558	3	0.032187	11052	DP1145_7	67.214	39.661			0	1637	681	1544	2712	3907	3907	575	1	9606
LMEEIMSEKENK	Oxidation (M)	1495.6898	0.68983076	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	1	3	0			1			14.648	14.648	3	2.812E-84	7435	DP1145_8	202.31	151.05			29061000	1638	186	1545	2713	3908	3908	185;186	1	9606
LMEEIMSEKENK	2 Oxidation (M)	1511.6847	0.68474538	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	2	1	3	0			2			13.508	13.508	3	0.022599	5913	DP1145_8	70.728	8.3208			0	1639	186	1545	2714;2715	3909;3910	3910	185;186	2	9606
LMMEQSKKSSLMVAR	3 Oxidation (M)	1785.8787	0.87871094	758	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	3	2	3	0			1			22.42	22.42	2	0.0033904	19278	DP1145_8	75.387	26.874			12548000	1640	758	1546	2716	3911	3911	627;628;629	1	9606
LNDLEDALQQAKEDLAR	Unmodified	1940.9803	0.98033378	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	3	0			1			20.949	20.949	2	0.0004051	17164	DP1145_8	132.24	102.44		+	14204000	1641	11	1547	2717	3912	3912		0	9606
LNDLEEALQQAK	Unmodified	1370.7042	0.70415892	18	P35908;CON__P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	1	1		1			19.039	19.039	2	7.1633E-71	14341	DP1145_8	197.79	133.14		+	52056000	1642	18	1548	2718;2719	3913;3914	3914		2	9606
LNESTFDTQITK	Unmodified	1395.6882	0.6881745	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.221	17.221	2	7.6746E-156	9637	DP1145_6	242.12	179.54			0	1643	401	1549	2720	3915	3915		1	9606
LNFSHGTHEYHAETIK	Unmodified	1882.8962	0.89621022	171	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	3	0			2			14.771	14.771	3;4	0.0016235	7601	DP1145_8	94.339	94.339			125670000	1644	171	1550	2721;2722	3916;3917;3918	3917		3	9606
LNIDSIIQR	Unmodified	1070.6084	0.60840804	251	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	3	0			1			19.212	19.212	2	0.0059249	14568	DP1145_8	116.37	29.577			46275000	1645	251	1551	2723	3919	3919		1	9606
LNIPVSQVNPR	Unmodified	1235.6986	0.69862003	112;167	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	1	0	1					17.153	17.153	2	1.3448E-12	9504	DP1145_6	146.69	103.82			76611000	1646	112;167	1552	2724	3920	3920		1	9606
LNISFPATGCQK	Unmodified	1334.6653	0.66527099	370	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	4	0				1		18.223	18.223	2	0.0020334	12182	DP1145_9	110.84	87.465			104570000	1647	370	1553	2725	3921	3921		1	9606
LNISYTR	Unmodified	865.46577	0.46576654	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.047	16.047	2	2.1629E-11	9514	DP1145_8	154.09	69.736			1531699999.9999998	1648	639	1554	2726;2727;2728	3922;3923;3924;3925;3926;3927;3928	3925		7	9606
LNQLKPGLQYK	Unmodified	1300.7503	0.75032125	436	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	3	0			1			15.377	15.377	3	0.022417	8534	DP1145_8	87.258	52.563			12058000	1649	436	1555	2729	3929	3929		0	9606
LPAAGVGDMVMATVK	2 Oxidation (M)	1490.7473	0.74728606	373	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	2	0	5	0					1	16.587	16.587	2	6.908E-07	9532	DP1145_10	130.44	84.029			85472000	1650	373	1556	2730	3930	3930	317;318	1	9606
LPAAGVGDMVMATVK	Oxidation (M)	1474.7524	0.75237144	373	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	1	0	5	0					1	18.391	18.391	2	0.00097591	12362	DP1145_10	113.38	89.856			89949000	1651	373	1556	2731	3931;3932;3933	3933	317;318	3	9606
LPAAGVGDMVMATVK	Unmodified	1458.7575	0.75745681	373	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	5	0					1	19.733	19.733	2	0.0068202	14173	DP1145_10	103.21	82.513			31838000	1652	373	1556	2732	3934;3935	3934		2	9606
LPAIALDLLR	Unmodified	1093.6859	0.68593008	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				21.684	21.684	2	0.00018369	18761	DP1145_7	131.22	23.928			24333000	1653	655	1557	2733	3936;3937	3936		2	9606
LPCIYLVDSGGAYLPR	Unmodified	1792.9182	0.91819121	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			21.111	21.111	2	0	17308	DP1145_8	357.53	319.83			1618399999.9999998	1654	700	1558	2734;2735	3938;3939;3940;3941	3941		4	9606
LPEDPLLSGLLDSPALK	Unmodified	1776.9873	0.98731663	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1.5	0.5	1	1				22.934	22.934	2	1.0616E-194	18289	DP1145_6	246.51	195.15			5930800	1655	290	1559	2736;2737	3942;3943;3944;3945	3944		4	9606
LPELLLK	Unmodified	824.53714	0.53714057	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	0.829	2	1	1			18.877	18.877	1;2	4.0525E-43	12249	DP1145_6	187.93	37.864			694900000	1656	438	1560	2738;2739;2740;2741	3946;3947;3948;3949;3950	3947		4	9606
LPFPIIDDR	Unmodified	1084.5917	0.59169534	227	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	5	0					1	20.033	20.033	2	9.8126E-14	14717	DP1145_10	135.83	86.472			32497000	1657	227	1561	2742	3951	3951		0	9606
LPGGNEIGMVAWK	Oxidation (M)	1386.6966	0.69657112	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.655	18.655	2	0.013397	12082	DP1145_6	77.288	53.199			920780000	1658	438	1562	2743	3952;3953	3952	396	2	9606
LPGGNEIGMVAWK	Unmodified	1370.7017	0.70165649	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0		1				19.55	19.55	2	6.9072E-08	15711	DP1145_7	132.03	70.337			48651000	1659	438	1562	2744	3954	3954		1	9606
LPGLLMTIIR	Oxidation (M)	1141.6893	0.68930089	314	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	0	2	0		1				20.763	20.763	2	0.030119	17669	DP1145_7	70.256	51.994			6929800	1660	314	1563	2745	3955	3955	286	1	9606
LPHSGEAQLSGTMAMTVVTK	Oxidation (M)	2073.0235	0.023460919	546	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	1	0	5	0					1	22.999	22.999	3	0.043659	18809	DP1145_10	51.798	16.306			5695300	1661	546	1564	2746	3956	3956	483	0	9606
LPLISGFYK	Unmodified	1036.5957	0.59571809	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	2	0		1				19.79	19.79	2	0.027298	16225	DP1145_7	87.323	75.368			9975000	1662	401	1565	2747	3957	3957		0	9606
LPLQDVYK	Unmodified	974.54368	0.54368251	391	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	2.67	1.25	1		1	1		17.468	17.468	2	0.0083389	9902	DP1145_6	101.28	23.966			306580000	1663	391	1566	2748;2749;2750	3958;3959;3960;3961	3958		4	9606
LPLTPVFEGLAFK	Unmodified	1430.8173	0.81733818	431	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	1	0	1					22.213	22.213	2	9.1593E-17	17199	DP1145_6	148.91	117.28			5404900	1664	431	1567	2751	3962;3963;3964	3962		3	9606
LPLVTPHTQCR	Unmodified	1320.6972	0.69723982	353	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	3	0			1			15.243	15.243	3	0.0026993	8293	DP1145_8	121.6	87.733			0	1665	353	1568	2752	3965	3965		1	9606
LPPDVLR	Unmodified	808.48069	0.48068833	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.454	16.454	2	0.026268	8569	DP1145_6	101.21	36.435			26161000	1666	401	1569	2753	3966	3966		1	9606
LPPLPLTLALGAFLNHR	Unmodified	1842.088	0.087974152	103	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	4	0				1		23.909	23.909	3	0.00069856	20431	DP1145_9	116.79	103.17			3077300	1667	103	1570	2754	3967;3968	3967		2	9606
LPPNTNDEVDEDPTGNK	Unmodified	1853.8279	0.82791546	494	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1.5	0.5	1	1				15.435	15.435	2	2.1385E-18	7389	DP1145_6	151.7	115.99			8945200	1668	494	1571	2755;2756	3969;3970	3969		2	9606
LPRPPPPEMPESLK	Unmodified	1586.849	0.84904901	409	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	1	0	1					17.053	17.053	3	0.011988	9457	DP1145_6	89.507	44.149			40512000	1669	409	1572	2757	3971	3971		1	9606
LPRPPPPEMPESLK	Oxidation (M)	1602.844	0.84396364	409	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	1	1	0	1					15.732	15.732	3	0.033876	7213	DP1145_6	67.095	43.011			67732000	1670	409	1572	2758	3972	3972	367	0	9606
LPRPPPPEMPESLKK	Oxidation (M)	1730.9389	0.93892665	409	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	1	2	1	0	1					14.846	14.846	4	0.017185	5966	DP1145_6	70.26	52.834			12945000	1671	409	1573	2759	3973	3973	367	0	9606
LPTFGAPEQLVDLK	Unmodified	1526.8344	0.83444481	468	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	3	0			1			20.7	20.7	2	0.020566	16675	DP1145_8	93.011	56.586			0	1672	468	1574	2760	3974	3974		1	9606
LPTIDPNTR	Unmodified	1025.5506	0.55055881	676	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	3	0			1			16.44	16.44	2	0.0049571	10181	DP1145_8	98.582	41.405			46662000	1673	676	1575	2761	3975	3975		1	9606
LPVGTTATLYFR	Unmodified	1337.7343	0.73433683	727	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	1	0	1					19.355	19.355	2	0.033438	13153	DP1145_6	79.986	29.513			23844000	1674	727	1576	2762	3976	3976		0	9606
LQAEIEGLK	Unmodified	999.56006	0.56006086	12	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3	0			1			16.823	16.823	2	0.035326	10973	DP1145_8	78.334	4.6698		+	214090000	1675	12	1577	2763	3977	3977		1	9606
LQAFGLNPK	Unmodified	986.55492	0.5549159	584	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2	0		1				17.399	17.399	2	1.6307E-06	12458	DP1145_7	143.85	52.812			66661000	1676	584	1578	2764	3978;3979;3980	3979		3	9606
LQAQSLSTVGPR	Unmodified	1255.6884	0.68844927	57	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2	0		1				16.122	16.122	2	1.4621E-23	10369	DP1145_7	160.53	97.315			61084000	1677	57	1579	2765	3981;3982	3981		2	9606
LQDEIQNMKEEMAR	2 Oxidation (M)	1765.7975	0.79748373	137	P08670	VIM	Vimentin	yes	yes	0	2	1	3.5	0.5			1	1		14.015	14.015	3	0.0014178	6578	DP1145_8	108.32	90.859			142740000	1678	137	1580	2766;2767	3983;3984	3983	133;134	2	9606
LQEAQMQQGPEAHKEPPAPSQGPGGK	Oxidation (M)	2712.2926	0.29257657	520	Q53GS7	GLE1	Nucleoporin GLE1	yes	yes	0	1	1	2	0		1				13.727	13.727	4	0.00015821	6897	DP1145_7	70.767	40.85			2886400	1679	520	1581	2768	3985	3985	469	1	9606
LQEPTPSSGDPGEHDPASTHK	Unmodified	2185.9876	0.987604	468	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1	0	1					14.144	14.144	4	0.038846	4993	DP1145_6	53.536	32.53			3673600	1680	468	1582	2769	3986	3986		0	9606
LQETSSQSYVEEQK	Unmodified	1654.7686	0.76860967	584	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	2	0		1				15.197	15.197	2	3.5034E-143	8961	DP1145_7	223.87	180.57			92390000	1681	584	1583	2770	3987	3987		1	9606
LQIEESSKPVR	Unmodified	1284.7038	0.70376498	170	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		14.375	14.375	3	0.0057564	6200	DP1145_9	130.01	35.697			87975000	1682	170	1584	2771	3988	3988		1	9606
LQLDSPEDAEFIVAK	Unmodified	1673.8512	0.85121708	55	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	0	1					19.851	19.851	2	0.017639	13764	DP1145_6	96.64	57.06			0	1683	55	1585	2772	3989	3989		1	9606
LQMEQQQQLQQR	Unmodified	1556.7729	0.77292396	715	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	5	0					1	15.471	15.471	2	0.015714	7726	DP1145_10	80.755	33.527			27027000	1684	715	1586	2773	3990	3990		1	9606
LQNKEHVIEALRR	Unmodified	1604.9111	0.91107242	220	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	2	5	0					1	14.582	14.582	4	0.024287	6311	DP1145_10	80.871	45.097			34031000	1685	220	1587	2774	3991	3991		1	9606
LQNLDALTNLTVLSMQSNR	Oxidation (M)	2146.1052	0.10521671	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	1	0	4	0				1		21.11	21.11	2	0.014211	16492	DP1145_9	73.722	39.539			48970000	1686	497	1588	2775	3992	3992	461	1	9606
LQNLDALTNLTVLSMQSNR	Unmodified	2130.1103	0.11030209	497	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	4	0				1		21.917	21.917	2	2.7025E-287	17488	DP1145_9	275.42	209.39			19696000	1687	497	1588	2776	3993;3994;3995	3994		3	9606
LQPHPQLSPEIR	Unmodified	1413.7728	0.7728476	461	Q13895	BYSL	Bystin	yes	yes	0	0	0	3	0			1			15.656	15.656	3	0.0026569	8999	DP1145_8	102.87	80.817			54396000	1688	461	1589	2777	3996	3996		0	9606
LQSDFAALLTGPLQR	Unmodified	1628.8886	0.88860564	662	Q9BU64	CENPO	Centromere protein O	yes	yes	0	0	0	4	0				1		21.854	21.854	2	0.0069911	17396	DP1145_9	101.47	67.723			2250700	1689	662	1590	2778	3997	3997		1	9606
LQSSQEPEAPPPR	Unmodified	1434.7103	0.71030693	760	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	3	0			1			14.231	14.231	2	0.014842	6958	DP1145_8	82.831	50.018			27635000	1690	760	1591	2779	3998	3998		1	9606
LQTPNTFPK	Unmodified	1044.5604	0.56039521	479	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2	0		1				16.082	16.082	2	0.0070126	10232	DP1145_7	95.358	44.655			151760000	1691	479	1592	2780	3999;4000	3999		2	9606
LQVEHPVTECITGLDLVQEMIR	Oxidation (M)	2595.3037	0.30365852	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			20.024	20.024	3	1.0277E-07	15748	DP1145_8	128.29	108.57			264640000	1692	115	1593	2781;2782	4001;4002	4002	88	2	9606
LQVEHPVTECITGLDLVQEMIR	Unmodified	2579.3087	0.3087439	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.89	21.89	3	3.6698E-117	18416	DP1145_8	210.33	182.15			78729000	1693	115	1593	2783	4003;4004	4003		2	9606
LQVEHPVTEMITGTDLVEWQLR	Oxidation (M)	2609.3159	0.31593777	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			20.325	20.325	3	5.0498000000000004E-54	16178	DP1145_8	173.19	148.83			626120000	1694	639	1594	2784	4005	4005	544	1	9606
LQVEHPVTEMITGTDLVEWQLR	Unmodified	2593.321	0.32102315	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			21.524	21.524	3	7.292100000000001E-69	17799	DP1145_8	188.32	158.03			78947000	1695	639	1594	2785	4006;4007	4006		2	9606
LRAESDFVKFDTPFLPK	Unmodified	2009.0622	0.062212911	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2	0		1				19.563	19.563	3	0.026998	15797	DP1145_7	94.639	77.151			109020000	1696	474	1595	2786	4008	4008		1	9606
LRAPTSTEANHIR	Unmodified	1464.7797	0.77972389	396	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	1	2	0		1				13.717	13.717	3	0.021879	6909	DP1145_7	82.925	51.577			1292400	1697	396	1596	2787	4009	4009		1	9606
LREYEAALNSK	Unmodified	1292.6725	0.67246486	198	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	3	0			1			14.978	14.978	3	0.015205	7877	DP1145_8	74.392	39.619			14063000	1698	198	1597	2788	4010	4010		1	9606
LRIEHQTITTPSK	Unmodified	1522.8467	0.84674083	265	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	1	4	0				1		14.674	14.674	3	0.035487	6586	DP1145_9	85.457	49.012			11851000	1699	265	1598	2789	4011	4011		0	9606
LRLDKYYMLIR	Oxidation (M)	1498.833	0.83300502	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	2	2	0		1				18.398	18.398	3	0.0075102	13913	DP1145_7	92.866	65.924			114960000	1700	474	1599	2790	4012	4012	445	1	9606
LRLDTGPQSLSGK	Unmodified	1370.7518	0.75177781	242	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	3	0			1			16.072	16.072	2	0.00029063	9617	DP1145_8	124.39	77.995			64274000	1701	242	1600	2791	4013	4013		1	9606
LRLESEGSPETLTNLR	Unmodified	1813.9534	0.95339074	732	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	1	1	0	1					17.754	17.754	3	0.021407	10358	DP1145_6	67.846	37.363			34854000	1702	732	1601	2792	4014	4014		1	9606
LSANQQNILK	Unmodified	1127.6299	0.62987176	333	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	5	0					1	15.623	15.623	2	0.023862	7887	DP1145_10	82.241	12.613			4461100	1703	333	1602	2793	4015	4015		1	9606
LSCQPMLSLDDFQLQPPVTFR	Oxidation (M)	2507.2189	0.21886626	81	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	1	0	5	0					2	22.263	22.263	2;3	2.6676E-137	17843	DP1145_10	222.75	203.18			22298000	1704	81	1603	2794;2795	4016;4017;4018;4019	4018	64	4	9606
LSDFNDITNMLLLK	Oxidation (M)	1651.8491	0.84910859	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					21.671	21.671	2	3.8217E-05	16547	DP1145_6	124.6	81.18			12491000	1705	401	1604	2796	4020;4021	4021	351	2	9606
LSDGGLLLSYDGSSYTTYMKEEVDR	Oxidation (M)	2814.2906	0.29057046	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					19.655	19.655	3	7.3241999999999996E-28	13445	DP1145_6	154.84	127.79			38410000	1706	438	1605	2797	4022;4023	4022	397	2	9606
LSEVLQAVTDHDIPQQLVER	Unmodified	2289.1965	0.19647456	616	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	2	0		1				19.864	19.864	3	0.016047	16217	DP1145_7	105.9	84.589			20227000	1707	616	1606	2798	4024	4024		0	9606
LSFYETGEIPR	Unmodified	1310.6507	0.65066678	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	2	1	1		1			18.852	18.852	2	0.0033932	12330	DP1145_6	114.97	70.215			64376000	1708	38	1607	2799;2800	4025;4026	4025		2	9606
LSGLNAFDIAEELVK	Unmodified	1617.8614	0.86138784	102	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	4	0				1		23.111	23.111	2	3.0976E-11	19277	DP1145_9	161.25	120.26			6543800	1709	102	1608	2801	4027	4027		1	9606
LSGVMVPAPIQDLEALR	Oxidation (M)	1823.9815	0.98151975	737	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	1	0	3	0			1			21.724	21.724	2	0.020202	18047	DP1145_8	67.118	38.542			9054300	1710	737	1609	2802	4028	4028	615	0	9606
LSHSDEKPYQCPVCQQR	Unmodified	2130.9575	0.95750662	331	P56270	MAZ	Myc-associated zinc finger protein	yes	yes	0	0	1	4	0				2		13.999	13.999	3;4	0.0041871	5695	DP1145_9	74.296	62.901			81767000	1711	331	1610	2803;2804	4029;4030	4029		2	9606
LSIVPVRR	Unmodified	938.60253	0.6025348	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	4	0				1		15.413	15.413	2	0.0090115	7809	DP1145_9	126.67	67.686			81592000	1712	173	1611	2805	4031;4032	4032		2	9606
LSLAEIYEQEYIK	Unmodified	1597.8239	0.8239397	37	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2	0		1				21.14	21.14	2	0.00082115	18025	DP1145_7	141.1	92.114			42745000	1713	37	1612	2806	4033	4033		1	9606
LSLDDLLQR	Unmodified	1071.5924	0.59242362	221	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					20.997	20.997	2	0.0027579	15480	DP1145_6	127.46	47.233			8870700	1714	221	1613	2807	4034	4034		1	9606
LSNIFVIGK	Unmodified	989.59097	0.59096706	367	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		19.176	19.176	2	0.0027008	13588	DP1145_9	119.27	80.312			0	1715	367	1614	2808	4035	4035		1	9606
LSQILTDFPK	Unmodified	1160.6441	0.64412484	676	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	3	0			1			19.024	19.024	2	0.0042558	14242	DP1145_8	97.965	44.472			38132000	1716	676	1615	2809	4036	4036		1	9606
LSQTLSLVPR	Unmodified	1112.6554	0.65535823	87	O94766	B3GAT3	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3	yes	yes	0	0	0	3	1.41	1	1	1	1	1	17.229	17.229	2	0.008142	10225	DP1145_10	93.143	13.669			1483999999.9999998	1717	87	1616	2810;2811;2812;2813;2814	4037;4038;4039;4040;4041;4042	4037		6	9606
LSQTPTHMPTILDDPGKK	Oxidation (M)	1994.0143	0.014276441	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	1	1	1	0	1					15.046	15.046	4	0.022073	6180	DP1145_6	61.524	40.787			12037000	1718	735	1617	2815	4043	4043	614	0	9606
LSQYQEPLHLPGVR	Unmodified	1635.8733	0.87328993	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.6	1.02	1	1	2	1		18.064	18.064	2;3	1.4193E-87	12744	DP1145_8	176.87	141.35			2735700000	1719	115	1618	2816;2817;2818;2819;2820	4044;4045;4046;4047;4048;4049;4050;4051	4050		8	9606
LSSPATLNSR	Unmodified	1044.5564	0.55637247	6	CON__P00761			yes	yes	0	0	0	3	1.41	1	1	1	1	1	15.018	15.018	2	2.1171E-75	6851	DP1145_9	204.62	140.42		+	5701200000	1720	6	1619	2821;2822;2823;2824;2825	4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062;4063	4061		12	
LSSQEAASSFGDDR	Unmodified	1468.643	0.64301522	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		16.177	16.177	2	0	9706	DP1145_8	284.73	244.67			2373600000	1721	115	1620	2826;2827;2828;2829	4064;4065;4066;4067;4068;4069;4070;4071	4068		8	9606
LSSQEAASSFGDDRLLIEK	Unmodified	2065.0328	0.032763277	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.523	18.523	3	0.0058471	13547	DP1145_8	85.636	64.927			141430000	1722	115	1621	2830	4072	4072		1	9606
LSVPATFMLVSLDEGPGPPIK	Oxidation (M)	2183.1548	0.15479267	615	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	1	0	1	0	1					21.848	21.848	2	0.010702	16784	DP1145_6	72.209	43.849			4287000	1723	615	1622	2831	4073	4073	527	1	9606
LTAIDILTTCAADIQR	Unmodified	1773.9295	0.92948418	82	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					22.137	22.137	2	0.0054517	17176	DP1145_6	108.32	50.05			4139000	1724	82	1623	2832	4074	4074		1	9606
LTAQFVAR	Unmodified	904.51305	0.51305109	498	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	0		1				16.034	16.034	2	0.0023785	10229	DP1145_7	124.34	52.394			111160000	1725	498	1624	2833	4075	4075		1	9606
LTDCVVMRDPASK	Oxidation (M)	1506.717	0.71704856	201	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	1	4	0				1		14.375	14.375	3	0.0086655	6199	DP1145_9	94.402	58.725			30075000	1726	201	1625	2834	4076	4076	198	0	9606
LTEVKDELEPLLELVEQGIIPPGK	Unmodified	2658.4731	0.47314992	708	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	1	3	0			1			23.978	23.978	3	0.00027548	21480	DP1145_8	71.143	43.423			3790300	1727	708	1626	2835	4077	4077		1	9606
LTFDTTFSPNTGKK	Unmodified	1555.7882	0.7882229	275	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	1	4	0				2		17.322	17.322	2;3	1.8593E-33	10656	DP1145_9	184.36	133.91			137010000	1728	275	1627	2836;2837	4078;4079	4078		1	9606
LTFLVAQK	Unmodified	918.55385	0.55385327	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.054	18.054	2	1.0091E-23	11070	DP1145_6	170.17	92.447			957730000	1729	438	1628	2838	4080;4081	4080		2	9606
LTFLVAQKDFRK	Unmodified	1464.8453	0.84528426	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	2	1	0	1					16.99	16.99	3	0.036569	9317	DP1145_6	71.555	51.24			3492300	1730	438	1629	2839	4082	4082		0	9606
LTGADGTPPGFLLK	Unmodified	1385.7555	0.7554662	420	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		19.223	19.223	2	0.0026278	13710	DP1145_9	123.11	68			28996000	1731	420	1630	2840	4083	4083		1	9606
LTGKDVNFEFPEFQL	Unmodified	1782.8829	0.88285156	351	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					1	22.454	22.454	2	1.5202E-09	18096	DP1145_10	155.33	113.09			12694000	1732	351	1631	2841	4084;4085;4086	4085		3	9606
LTLEDLEDSWDR	Unmodified	1490.6889	0.68890278	542	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					22.153	22.153	2	0.021197	17188	DP1145_6	85.377	44.653			1930300	1733	542	1632	2842	4087	4087		0	9606
LTLIDPETLLPR	Unmodified	1379.8024	0.8024164	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0.816	1	1	1			22.032	22.032	2	1.0009E-42	19070	DP1145_7	172.88	138.49			86191000	1734	566	1633	2843;2844;2845	4088;4089;4090;4091;4092	4091		5	9606
LTLSALVDGK	Unmodified	1015.5914	0.59136099	275	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	1	0	1					19.255	19.255	2	0.021165	12888	DP1145_6	84.213	36.47			4061500	1735	275	1634	2846	4093	4093		1	9606
LTMELTGDSMEVKPIMTRK	2 Oxidation (M)	2211.0949	0.094911302	692	Q9H7L9	SUDS3	Sin3 histone deacetylase corepressor complex component SDS3	yes	yes	0	2	2	1	0	1					19.149	19.149	2	0.027602	12725	DP1145_6	56.956	14.96			143030000	1736	692	1635	2847	4094	4094	581;582	1	9606
LTPEEEEILNK	Unmodified	1313.6715	0.6714618	355	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	3.33	1.7	1			1	1	17.59	17.59	2	2.9327999999999998E-52	10919	DP1145_10	189.38	145.74			591640000	1737	355	1636	2848;2849;2850	4095;4096;4097;4098;4099;4100	4095		6	9606
LTPEEEEILNKKR	Unmodified	1597.8675	0.86753585	355	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	2	5	0					1	15.459	15.459	3	0.0069009	7513	DP1145_10	93.623	64.834			10664000	1738	355	1637	2851	4101	4101		0	9606
LTPEELER	Unmodified	985.50803	0.50802529	95	O95399	UTS2	Urotensin-2	yes	yes	0	0	0	3	0			1			15.756	15.756	2	0.0019499	9153	DP1145_8	125.81	0			166230000	1739	95	1638	2852	4102;4103	4102		2	9606
LTPLILKPFGNSISR	Unmodified	1654.977	0.97702672	477	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	1	1	0	1					19.49	19.49	3	0.019875	13328	DP1145_6	91.845	83.353			38459000	1740	477	1639	2853	4104;4105	4105		2	9606
LTPWEQFLEK	Unmodified	1289.6656	0.66558856	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	2	0		1				21.429	21.429	2	0.001939	18451	DP1145_7	102.62	68.435			76776000	1741	688	1640	2854	4106	4106		1	9606
LTQILSYLR	Unmodified	1105.6495	0.64954457	440	Q13123	IK	Protein Red	yes	yes	0	0	0	4	0				1		19.771	19.771	2	1.7772E-11	14466	DP1145_9	145.16	97.307			0	1742	440	1641	2855	4107	4107		1	9606
LTQTSGETTHTDKVPGGEDK	Unmodified	2099.9971	0.99710605	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	0.5		1	1			12.811	12.811	3;4	0.0044607	5661	DP1145_8	105.5	84.172			84810000	1743	276	1642	2856;2857	4108;4109;4110	4110		3	9606
LTSDDVKEQIYK	Unmodified	1437.7351	0.73512469	362	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	1	5	0					2	16.177	16.177	2;3	3.3176E-42	8725	DP1145_10	180.66	143.1			106190000	1744	362	1643	2858;2859	4111;4112	4111		2	9606
LTSLVPFVDAFQLER	Unmodified	1733.9352	0.93522148	465	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1.5	0.5	1	1				23.091	23.091	2	9.1386E-103	20884	DP1145_7	208.17	141.98			2715400	1745	465	1644	2860;2861	4113;4114	4114		2	9606
LTTPTYGDLNHLVSATMSGVTTCLR	Oxidation (M)	2723.3259	0.32585053	395;131;460	P07437;P68371;P04350;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	3.25	0.433			3	1		20.576	20.576	2;3	2.781E-05	16439	DP1145_8	83.826	66.395			651630000	1746	131;395;460	1645	2862;2863;2864;2865	4115;4116;4117;4118;4119	4116	125	5	9606
LTTPTYGDLNHLVSATMSGVTTCLR	Unmodified	2707.3309	0.33093591	395;131;460	P07437;P68371;P04350;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	4	0				1		22.27	22.27	3	0.0022784	18107	DP1145_9	61.807	31.989			11522000	1747	131;395;460	1645	2866	4120	4120		1	9606
LVAGEMGQNEPDQGGQR	Oxidation (M)	1800.8061	0.80607458	647	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	1	0	5	0					1	14.147	14.147	2	1.6544E-11	5779	DP1145_10	138.63	96.937			5655000	1748	647	1646	2867	4121;4122	4121	558	2	9606
LVAGSTDQLLSAFVPPEEPPLQPAR	Unmodified	2631.3908	0.39081727	464	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	1.5	0.5	1	1				22.209	22.209	3	5.0827E-37	19608	DP1145_7	163.04	151.44			23259000	1749	464	1647	2868;2869	4123;4124;4125;4126	4125		4	9606
LVAIVDVIDQNR	Unmodified	1353.7616	0.76161421	300	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					1	20.133	20.133	2	7.8732E-43	14818	DP1145_10	204.79	168.34			107670000	1750	300	1648	2870	4127	4127		1	9606
LVDLPLGLPFYK	Unmodified	1373.7959	0.79587446	472	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	1	0	1					22.41	22.41	2	0.024391	17569	DP1145_6	75.378	36.356			3368000	1751	472	1649	2871	4128	4128		1	9606
LVELLMHNDYK	Oxidation (M)	1389.6962	0.69623677	309	P52294;O60684;O15131	KPNA1;KPNA6;KPNA5	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6	yes	no	0	1	0	3	0			1			16.823	16.823	2	0.001295	10892	DP1145_8	101.66	55.668			27368000	1752	309	1650	2872	4129	4129	283	0	9606
LVGQSIIAYLQK	Unmodified	1331.7813	0.78128702	315	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	0	1					20.745	20.745	2	0.0072369	15081	DP1145_6	101.46	67.274			0	1753	315	1651	2873	4130	4130		1	9606
LVGSVNLFSDENVPR	Unmodified	1644.8471	0.84713476	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1.5	0.5	1	1				19.663	19.663	2	5.5235E-26	15989	DP1145_7	163.12	140.58			88120000	1754	655	1652	2874;2875	4131;4132;4133	4132		3	9606
LVIITAGAR	Unmodified	912.57565	0.57565135	104	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	4	0				1		16.823	16.823	2	9.8273E-13	9986	DP1145_9	129.68	44.323			56306000	1755	104	1653	2876	4134	4134		0	9606
LVILANNCPALR	Unmodified	1352.7598	0.75984008	378	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	18.452	18.452	2	2.8414E-32	12324	DP1145_10	167.33	120.13			186450000	1756	378	1654	2877	4135	4135		1	9606
LVLADLLEPVK	Unmodified	1208.738	0.73802523	667	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	4	0				1		21.854	21.854	2	0.011153	17420	DP1145_9	89.047	47.068			6222600	1757	667	1655	2878	4136	4136		1	9606
LVLDAFALPLTNLFK	Unmodified	1673.9756	0.97562974	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2.5	0.5		1	1			24.818	24.818	2	0.0025808	22602	DP1145_8	110.66	86.197			6278200	1758	322	1656	2879;2880	4137;4138;4139;4140	4139		4	9606
LVLDSIIWAFK	Unmodified	1303.754	0.75400964	44	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				23.528	23.528	2	0.013212	21507	DP1145_7	89.355	39.64			1313100	1759	44	1657	2881	4141	4141		0	9606
LVLEQVVTSIASVADTAEEK	Unmodified	2101.1154	0.11543027	31	O00410	IPO5	Importin-5	yes	yes	0	0	0	2.33	0.471		2	1			23.714	23.714	2;3	1.2461E-255	21833	DP1145_7	261.17	226.67			41950000	1760	31	1658	2882;2883;2884	4142;4143;4144;4145;4146;4147;4148	4144		7	9606
LVLVGDGGTGK	Unmodified	1014.571	0.5709599	372	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	3	2	1				1	16.315	16.315	2	0.00015847	8207	DP1145_6	106.88	24.909			107020000	1761	372	1659	2885;2886	4149;4150	4150		1	9606
LVNELTEFAK	Unmodified	1162.6234	0.6233894	10	CON__P02769			yes	yes	0	0	0	2.75	1.48	1	1	1		1	18.629	18.629	2	1.8118E-17	13656	DP1145_8	155.58	97.355		+	433730000	1762	10	1660	2887;2888;2889;2890	4151;4152;4153;4154;4155;4156	4154		6	
LVNHFVEEFK	Unmodified	1260.6503	0.65027285	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			17.323	17.323	2	0.0054503	11657	DP1145_8	108.47	73.201			375220000	1763	148	1661	2891	4157	4157		1	9606
LVNHFVEEFKR	Unmodified	1416.7514	0.75138388	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3.75	0.829			2	1	1	16.444	16.444	2;3	1.5741000000000001E-27	10212	DP1145_8	166.86	166.86			1544199999.9999998	1764	148	1662	2892;2893;2894;2895	4158;4159;4160;4161;4162;4163	4160		6	9606
LVPDLLAIVQR	Unmodified	1235.7602	0.76015765	689	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1.5	0.5	1	1				21.683	21.683	2	0.0029352	16530	DP1145_6	116.05	86.307			20899000	1765	689	1663	2896;2897	4164;4165;4166	4165		3	9606
LVPELDTIVPLESTK	Unmodified	1652.9237	0.92365374	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	20.814	20.814	2	1.9895E-105	16861	DP1145_8	212.09	123.01			1217500000	1766	116	1664	2898;2899;2900;2901	4167;4168;4169;4170;4171;4172;4173	4170		7	9606
LVPTGLDFGQEGFTR	Unmodified	1635.8257	0.82567103	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2.5	0.5		1	1			20.194	20.194	2	6.4516E-46	16725	DP1145_7	175.74	150.5			161470000	1767	277	1665	2902;2903	4174;4175;4176	4174		3	9606
LVPVGYGIK	Unmodified	944.5695	0.56950333	208	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	4	0				1		17.122	17.122	2	0.032016	10538	DP1145_9	85.265	26.661			61405000	1768	208	1666	2904	4177	4177		0	9606
LVPVGYGIR	Unmodified	972.57565	0.57565135	225	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		17.622	17.622	2	0.029258	10928	DP1145_9	84.244	45.425			304850000	1769	225	1667	2905	4178	4178		1	9606
LVQTPLTDR	Unmodified	1041.5819	0.58185893	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.235	16.235	2	0.0021416	8045	DP1145_6	104.06	53.93			25625000	1770	466	1668	2906	4179	4179		1	9606
LVSESSDVLPK	Unmodified	1172.6289	0.62886871	12	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	3.5	0.5			1	1		16.363	16.363	2	5.8302E-05	9885	DP1145_8	111.06	47.581		+	135860000	1771	12	1669	2907;2908	4180;4181	4180		1	9606
LVSSDPEINTK	Unmodified	1201.619	0.6190323	764	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	4	0				1		15.064	15.064	2	2.0842E-05	7146	DP1145_9	133.99	86.145			21839000	1772	764	1670	2909	4182	4182		1	9606
LVSSPCCIVTSTYGWTANMER	Unmodified	2431.097	0.097036567	136	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	2	0		1				20.763	20.763	2	0.01732	17668	DP1145_7	72.321	53.078			8831900	1773	136	1671	2910	4183	4183		1	9606
LVTEMGTYATQSALSSSRPTK	Oxidation (M)	2243.1104	0.11036167	314	P53618	COPB1	Coatomer subunit beta	yes	yes	0	1	1	2.5	0.5		1	1			16.088	16.088	3	1.0945E-116	10306	DP1145_7	212.34	176.57			127820000	1774	314	1672	2911;2912	4184;4185;4186	4184	287	3	9606
LVTTGVLK	Unmodified	829.5273	0.52730417	130	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	yes	yes	0	0	0	4	0				1		15.878	15.878	2	7.0988E-07	8460	DP1145_9	107.32	40.324			85052000	1775	130	1673	2913	4187	4187		0	9606
LVVPASQCGSLIGK	Unmodified	1427.7806	0.7806351	491	Q15366;P57721	PCBP2;PCBP3	Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	yes	no	0	0	0	4	0				1		17.722	17.722	2	0.015802	11420	DP1145_9	81.017	41.394			49223000	1776	491	1674	2914	4188	4188		1	9606
LVVWAADR	Unmodified	928.51305	0.51305109	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		17.715	17.715	2	0.0021135	13025	DP1145_7	125.25	74.216			3323799999.9999995	1777	639	1675	2915;2916;2917	4189;4190;4191	4189		3	9606
LVYVFSQDFTVFGGSLSGAHAQK	Unmodified	2457.2329	0.23286007	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			2			21.325	21.325	2;3	3.6522E-10	17724	DP1145_8	130.95	101.59			367960000	1778	116	1676	2918;2919	4192;4193;4194	4194		3	9606
LWALQDFSCLK	Unmodified	1379.6908	0.69075746	432	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					21.673	21.673	2	0.029923	16458	DP1145_6	89.029	46.691			5696800	1779	432	1677	2920	4195	4195		1	9606
LWGLTEMFPER	Unmodified	1377.6751	0.67510739	715	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	5	0					1	22.091	22.091	2	0.025395	17636	DP1145_10	76.282	17.849			6559600	1780	715	1678	2921	4196	4196		1	9606
LWSLDSDEPVADIEGHTVR	Unmodified	2138.028	0.02801225	53	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	3	0			1			19.824	19.824	3	0.015179	15643	DP1145_8	62.94	38.531			33127000	1781	53	1679	2922	4197	4197		1	9606
LYDIDVAK	Unmodified	935.4964	0.49639797	369	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	5	0					1	17.247	17.247	2	2.0074E-11	10445	DP1145_10	134.06	67.024			125650000	1782	369	1680	2923	4198	4198		0	9606
LYEFIVRHFLACCSQDAQGQETTVEIDIAQER	Unmodified	3825.8091	0.80905805	454	Q13472	TOP3A	DNA topoisomerase 3-alpha	yes	yes	0	0	1	1	0	1					19.155	19.155	5	0.01209	13143	DP1145_6	37.054	21.444			43829000	1783	454	1681	2924	4199	4199		1	9606
LYGDDALDNALQTFIK	Unmodified	1795.8992	0.89922991	748	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	2	0		1				23.271	23.271	2	2.5658E-25	21179	DP1145_7	160.56	125.81			5710000	1784	748	1682	2925	4200	4200		1	9606
LYGSAGPPPTGEEDTAEKDEL	Unmodified	2174.9855	0.98553831	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	3	0			1			17.723	17.723	2	2.6933E-05	12435	DP1145_8	127.32	94.127			81865000	1785	153	1683	2926	4201	4201		1	9606
LYIGNLNESVTPADLEK	Unmodified	1874.9626	0.96255845	729	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	3	0			1			19.857	19.857	2	3.9984E-07	15479	DP1145_8	133.15	92.039			0	1786	729	1684	2927	4202	4202		1	9606
LYKDDQLLDDGK	Unmodified	1421.7038	0.70382456	493	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	1	5	0					2	16.165	16.165	2;3	0.00073356	8712	DP1145_10	128.88	61.387			69054000	1787	493	1685	2928;2929	4203;4204;4205	4205		3	9606
LYKEELEQTYHAK	Unmodified	1650.8253	0.82533668	198	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	3	0			1			15.243	15.243	4	3.9597E-06	8270	DP1145_8	96.067	65.07			21247000	1788	198	1686	2930	4206	4206		1	9606
LYPLEIVFGMNGR	Oxidation (M)	1523.7806	0.7806351	707	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	1	0	4	0				1		22.362	22.362	2	0.025522	18182	DP1145_9	82.831	41.75			0	1789	707	1687	2931	4207	4207	592	1	9606
LYPVLQQSLVR	Unmodified	1314.766	0.76597131	527	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	4	0				1		19.223	19.223	2	0.003089	13625	DP1145_9	99.013	81.987			36812000	1790	527	1688	2932	4208;4209	4208		2	9606
LYQLLNLHYPPK	Unmodified	1497.8344	0.83438523	35	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	3	0			1			18.494	18.494	3	0.004556	13540	DP1145_8	86.014	66.234			19828000	1791	35	1689	2933	4210	4210		1	9606
LYSPSQIGAFVLMK	Unmodified	1552.8323	0.83233632	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.582	21.582	2	0.00037907	18009	DP1145_8	118.4	78.53			36701000	1792	254	1690	2934	4211;4212	4212		2	9606
LYTLVTYVPVTTFK	Unmodified	1643.9174	0.91744615	379	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	21.298	21.298	2	0.0035044	16320	DP1145_10	106.16	83.596			75068000	1793	379	1691	2935	4213	4213		1	9606
MAALEVYVR	Oxidation (M)	1066.5481	0.54811597	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.253	17.253	2	0.019503	9854	DP1145_6	81.548	27.391			465830000	1794	438	1692	2936	4214	4214	398	1	9606
MAALEVYVR	Unmodified	1050.5532	0.55320134	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.355	18.355	2	0.0045587	11471	DP1145_6	113.41	14.994			221410000	1795	438	1692	2937	4215	4215		1	9606
MAAPPEPGEPEER	Acetyl (Protein N-term);Oxidation (M)	1466.6348	0.63475872	526	Q5RI15	COX20	Cytochrome c oxidase protein 20 homolog	yes	yes	1	1	0	5	0					1	31.62	31.62	2	0.044858	27771	DP1145_10	44.98	18.092			0	1796	526	1693	2938	4216	4216	471	1	9606
MADALDNYVIR	Oxidation (M)	1295.618	0.61798644	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.2	1.17	2	1	1	1		18.414	18.414	2	8.1894E-13	14041	DP1145_7	146.69	111.26			1293300000	1797	115	1694	2939;2940;2941;2942;2943	4217;4218;4219;4220;4221;4222	4219	89	6	9606
MADALDNYVIR	Unmodified	1279.6231	0.62307182	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		19.073	19.073	2	1.2609E-11	13457	DP1145_9	131.62	85.458			260960000	1798	115	1694	2944;2945	4223;4224	4224		1	9606
MADEAVCVGPAPTSK	Oxidation (M)	1547.696	0.69597877	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	2.4	1.02	1	2	1	1		15.401	15.401	2	0	9308	DP1145_7	286.19	232.59			768310000	1799	115	1695	2946;2947;2948;2949;2950	4225;4226;4227;4228;4229;4230;4231;4232;4233;4234;4235	4228	90	11	9606
MADEAVCVGPAPTSK	Unmodified	1531.7011	0.70106415	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		16.077	16.077	2	7.0398E-244	9552	DP1145_8	264.3	217.84			693080000	1800	115	1695	2951;2952;2953	4236;4237;4238;4239;4240;4241	4237		6	9606
MADVFPGNDSTASQDVANR	Acetyl (Protein N-term);Oxidation (M)	2051.8854	0.88544711	183	P17252	PRKCA	Protein kinase C alpha type	yes	yes	1	1	0	5	0					1	25.98	25.98	2	0.046028	22699	DP1145_10	41.242	26.555			0	1801	183	1696	2954	4242	4242	181	1	9606
MAFVNSVAKPPR	Oxidation (M)	1331.702	0.70199085	467	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	1	1	2.33	0.471		2	1			15.04	15.04	2;3	0.0025369	8774	DP1145_7	105.46	77.689			101110000	1802	467	1697	2955;2956;2957	4243;4244;4245;4246	4243	438	3	9606
MAFVNSVAKPPR	Unmodified	1315.7071	0.70707622	467	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2	0		1				16.122	16.122	3	0.0030736	10365	DP1145_7	121.29	104.66			51969000	1803	467	1697	2958	4247;4248	4248		2	9606
MAGGGSDLSTR	Acetyl (Protein N-term);Oxidation (M)	1108.4819	0.48188689	695	Q9H930	SP140L	Nuclear body protein SP140-like protein	yes	yes	1	1	0	3	0			1			18.924	18.924	2	0.012638	14266	DP1145_8	65.465	23.813			35407000	1804	695	1698	2959	4249	4249	584	1	9606
MAKPEEVLVVENDQGEVVR	Unmodified	2140.0834	0.083418639	44	O14980	XPO1	Exportin-1	yes	yes	0	0	1	2	0		1				17.765	17.765	3	0.018057	12967	DP1145_7	98.062	71.588			0	1805	44	1699	2960	4250	4250		1	9606
MALIGLGVSHPVLK	Oxidation (M)	1449.8378	0.83775605	202	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	3.5	0.5			1	1		17.742	17.742	2	1.9402E-07	11439	DP1145_9	132.32	89.236			51334000	1806	202	1700	2961;2962	4251;4252	4252	200	1	9606
MALLASNSCFIR	Oxidation (M)	1397.6795	0.67954084	470	Q14331	FRG1	Protein FRG1	yes	yes	0	1	0	4	0				1		18.301	18.301	2	0.0098514	12265	DP1145_9	98.044	52.072			0	1807	470	1701	2963	4253	4253	439	1	9606
MALNHPYFNDLDNQIK	Unmodified	1931.92	0.91998213	122	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		18.323	18.323	3	0.02488	12649	DP1145_9	64.407	22.712			131130000	1808	122	1702	2964	4254	4254		1	9606
MAPKQDPK	Acetyl (Protein N-term);Oxidation (M)	971.47462	0.47461667	739	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	1	1	1	1	0	2					16.523	16.523	2	0.037225	8633	DP1145_6	52.636	10.984			0	1809	739	1703	2965;2966	4255;4256	4256	616	2	9606
MASKGAGMSFSR	Acetyl (Protein N-term);Oxidation (M)	1286.5747	0.57474142	534	Q5XPI4	RNF123	E3 ubiquitin-protein ligase RNF123	yes	yes	1	1	1	1	0	1					19.229	19.229	2	0.043921	12816	DP1145_6	46.462	21.025			0	1810	534	1704	2967	4257	4257	473	1	9606
MASSNTVLMRLVASAYSIAQK	Acetyl (Protein N-term);Oxidation (M)	2298.1712	0.17118779	101	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	1	1	1	1	0	1					19.581	19.581	3	0.022133	12762	DP1145_6	43.326	14.913			1963999999.9999998	1811	101	1705	2968	4258	4258	76	1	9606
MATEVAADALGEEWK	Oxidation (M)	1635.745	0.74503745	370	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	0	4	0				1		18.923	18.923	2	2.3383E-190	13311	DP1145_9	241.39	202.75			378100000	1812	370	1706	2969	4259;4260;4261	4259	314	3	9606
MATGLGEPVYGLSEDEGESR	Acetyl (Protein N-term);Oxidation (M)	2153.9423	0.94229329	637	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	1	1	0	1	0	1					14.957	14.957	2	0.026382	6125	DP1145_6	62.287	25.841			0	1813	637	1707	2970	4262	4262	535	1	9606
MAVLALLAK	Oxidation (M)	944.57287	0.57287415	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					18.855	18.855	2	0.0012259	12164	DP1145_6	128.48	73.873			17311000	1814	401	1708	2971	4263;4264	4263	352	2	9606
MAVTFIGNSTAIQELFK	Oxidation (M)	1884.9655	0.96553533	131	P07437	TUBB	Tubulin beta chain	yes	yes	0	1	0	3	1.22	1		1	2		22.086	22.086	2;3	3.186E-147	18763	DP1145_8	225.63	175.35			580300000	1815	131	1709	2972;2973;2974;2975	4265;4266;4267;4268;4269;4270;4271;4272	4267	126	8	9606
MAVTFIGNSTAIQELFK	Unmodified	1868.9706	0.97062071	131	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	3.5	0.5			1	1		22.667	22.667	2	8.8662E-47	19535	DP1145_8	212.9	179.71			82541000	1816	131	1709	2976;2977	4273;4274	4273		2	9606
MDENQFVAVTSTNAAK	Unmodified	1724.8039	0.80394931	502	Q16555;Q14195;Q14194	DPYSL2;DPYSL3;CRMP1	Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 1	yes	no	0	0	0	4	1			1		1	17.848	17.848	2	1.5222E-07	11336	DP1145_10	136.53	109.1			8997400	1817	502	1710	2978;2979	4275;4276	4275		2	9606
MDEPSPLAQPLELNQHSR	Acetyl (Protein N-term);Oxidation (M)	2119.0004	0.0004172906	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	1	0	2	1.41	2			1		19.055	19.055	2;3	2.0749E-255	12617	DP1145_6	261.02	226.97			718000000	1818	438	1711	2980;2981;2982	4277;4278;4279;4280;4281;4282;4283	4280	399	7	9606
MDEPSPLAQPLELNQHSR	Acetyl (Protein N-term)	2103.0055	0.0055026685	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	1.5	0.5	1	1				19.854	19.854	2	1.1899E-80	16262	DP1145_7	189.99	127.85			120390000	1819	438	1711	2983;2984	4284;4285	4285		2	9606
MDFKEDLSGIAEMFK	2 Oxidation (M)	1791.8059	0.80592315	276	P46013	MKI67	Antigen KI-67	yes	yes	0	2	1	2	0		1				20.4	20.4	3	0.018753	17005	DP1145_7	70.167	52.741			10376000	1820	276	1712	2985	4286	4286	248;249	1	9606
MDKPAHMKHSGYLYALGQK	2 Oxidation (M)	2206.0663	0.066328786	562	Q86UW7	CADPS2	Calcium-dependent secretion activator 2	yes	yes	0	2	2	4	0				1		15.097	15.097	4	0.024715	7188	DP1145_9	53.255	37.248			569090000	1821	562	1713	2986	4287	4287	491;492	1	9606
MDLFGDLPEPER	Acetyl (Protein N-term)	1459.6653	0.66533057	682	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	1	0	0	4	0				1		24.064	24.064	2	0.038777	20674	DP1145_9	46.706	16.094			1323800	1822	682	1714	2987	4288	4288		1	9606
MDNYADLSDTELTTLLR	Acetyl (Protein N-term);Oxidation (M)	2027.9358	0.93575135	298	P50402	EMD	Emerin	yes	yes	1	1	0	4	0				1		23.667	23.667	2	1.4370000000000002E-221	20114	DP1145_9	254.89	213.64			3865300	1823	298	1715	2988	4289;4290	4290	274	2	9606
MDPMNIWDDIITNR	2 Oxidation (M)	1764.7811	0.78110538	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	2	0	1	0	1					21.794	21.794	2	1.7743E-17	16628	DP1145_6	150.51	114.51			9919600	1824	401	1716	2989	4291;4292	4291	353;354	2	9606
MDPNTIIEALR	Acetyl (Protein N-term);Oxidation (M)	1329.6599	0.65985126	93	O95373	IPO7	Importin-7	yes	yes	1	1	0	1	0	1					22.137	22.137	2	0.035162	17177	DP1145_6	48.998	9.6935			4078100	1825	93	1717	2990	4293	4293	75	1	9606
MDPNTIIEALR	Acetyl (Protein N-term)	1313.6649	0.66493664	93	O95373	IPO7	Importin-7	yes	yes	1	0	0	2	0		1				24.377	24.377	2	0.00080756	22723	DP1145_7	99.568	73.994			6676100	1826	93	1717	2991	4294	4294		1	9606
MDVFLMIR	Acetyl (Protein N-term);Oxidation (M)	1081.53	0.53002306	493	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	1	1	0	5	0					1	23.352	23.352	2	0.00056903	19338	DP1145_10	117.93	117.93			7860200	1827	493	1718	2992	4295;4296	4296	459	2	9606
MEDLTNPEDIR	Unmodified	1331.6027	0.60273031	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					17.654	17.654	2	0.00442	10388	DP1145_6	111.06	54.01			11313000	1828	476	1719	2993	4297	4297		1	9606
MEDLTNPEDIR	Oxidation (M)	1347.5976	0.59764493	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	1	0	1	0	1					16.843	16.843	2	0.026956	9031	DP1145_6	94.692	65.025			0	1829	476	1719	2994	4298	4298	451	1	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);2 Oxidation (M)	2980.2421	0.24212218	127	P06748	NPM1	Nucleophosmin	yes	yes	1	2	1	4.5	0.5				2	2	22.068	22.068	2;3	4.1226E-10	17521	DP1145_10	121.32	109.68			355260000	1830	127	1720	2995;2996;2997;2998	4299;4300;4301;4302;4303;4304;4305;4306;4307;4308;4309;4310	4300	111;112;113;114	12	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);4 Oxidation (M)	3012.232	0.23195142	127	P06748	NPM1	Nucleophosmin	yes	yes	1	4	1	4	0				1		21.016	21.016	3	9.0055E-05	16246	DP1145_9	95.624	83.131			650790000	1831	127	1720	2999	4311;4312	4311	111;112;113;114	2	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);3 Oxidation (M)	2996.237	0.2370368	127	P06748	NPM1	Nucleophosmin	yes	yes	1	3	1	4	0				1		21.576	21.576	3	1.1721E-07	16705	DP1145_9	116.27	110.82			358970000	1832	127	1720	3000	4313;4314;4315	4313	111;112;113;114	3	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term);Oxidation (M)	2964.2472	0.24720756	127	P06748	NPM1	Nucleophosmin	yes	yes	1	1	1	4	0				2		22.637	22.637	2;3	2.5878E-13	18610	DP1145_9	134.76	122.04			87418000	1833	127	1720	3001;3002	4316;4317;4318;4319;4320	4320	111;112;113;114	5	9606
MEDSMDMDMSPLRPQNYLFGCELK	Acetyl (Protein N-term)	2948.2523	0.25229293	127	P06748	NPM1	Nucleophosmin	yes	yes	1	0	1	4	0				1		23.27	23.27	3	2.9567E-05	19502	DP1145_9	83.395	73.541			3566600	1834	127	1720	3003	4321;4322	4321		2	9606
MEEDPDDVPHGHITSLAVK	Oxidation (M)	2104.9735	0.97353384	267	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	1	0	4	0				1		16.137	16.137	3	0.042895	8832	DP1145_9	56.817	18.204			0	1835	267	1721	3004	4323	4323	239	1	9606
MEEGQYSEIEELPR	Acetyl (Protein N-term);Oxidation (M)	1766.7669	0.76689511	126	P06734	FCER2	Low affinity immunoglobulin epsilon Fc receptor;Low affinity immunoglobulin epsilon Fc receptor membrane-bound form;Low affinity immunoglobulin epsilon Fc receptor soluble form	yes	yes	1	1	0	2	0		1				17.443	17.443	2	0.041281	12760	DP1145_7	46.001	19.884			24510000	1836	126	1722	3005	4324	4324	108	0	9606
MEEKEDKHQQHK	Acetyl (Protein N-term);Oxidation (M)	1623.7311	0.73111872	581	Q8N5S3	C2orf73	Uncharacterized protein C2orf73	yes	yes	1	1	2	3	0			1			13.82	13.82	3	0.04523	6258	DP1145_8	43.897	21.984			0	1837	581	1723	3006	4325	4325	510	1	9606
MEEPQSDPSVEPPLSQETFSDLWK	Acetyl (Protein N-term);Oxidation (M)	2833.264	0.26402136	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	1	1	0	3	0			3			23.645	23.645	2;3	1.6844E-60	20924	DP1145_8	178.84	154.38			20057000	1838	110	1724	3007;3008;3009	4326;4327;4328;4329	4327	80	4	9606
MEEPQSDPSVEPPLSQETFSDLWK	Acetyl (Protein N-term)	2817.2691	0.26910674	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	1	0	0	3	0			1			24.216	24.216	3	0.00061688	21730	DP1145_8	73.036	58.589			4133300	1839	110	1724	3010	4330;4331	4330		2	9606
MEGPLSVFGDR	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	188	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	1	0	3	0			1			21.918	21.918	2	0.00066259	18430	DP1145_8	100.48	75.601			7278600	1840	188	1725	3011	4332;4333	4332	188	2	9606
MEGPLSVFGDR	Acetyl (Protein N-term)	1248.5809	0.58087266	188	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	0	0	3	0			1			23.507	23.507	2	0.004418	20679	DP1145_8	78.939	35.912			2508200	1841	188	1725	3012	4334	4334		1	9606
MEGSGEQPGPQPQHPGDHR	Acetyl (Protein N-term);Oxidation (M)	2097.8923	0.89226382	749	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	1	1	0	3	0			1			13.738	13.738	3	0.0012051	6197	DP1145_8	83.894	74.711			14750000	1842	749	1727	3013	4335	4335	619	1	9606
MEIDDMASNIEALSKSKSNIER	2 Oxidation (M)	2512.1785	0.17851759	754	Q9UKX3	MYH13	Myosin-13	yes	yes	0	2	2	1	0	1					22.412	22.412	2	0.019687	17543	DP1145_6	65.219	44.561			0	1843	754	1728	3014	4336	4336	624;625	1	9606
MEIGWMHNRRQR	2 Oxidation (M)	1644.7725	0.7725468	711	Q9NRJ7	PCDHB16	Protocadherin beta-16	yes	yes	0	2	2	3	0			1			21.171	21.171	2	0.042873	17344	DP1145_8	62.546	14.575			0	1844	711	1729	3015	4337	4337	593;594	1	9606
MELITILEK	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	1	0	2.67	1.7	1	1			1	23.52	23.52	2	0.0059593	21474	DP1145_7	83.783	83.783			35973000	1845	478	1730	3016;3017;3018	4338;4339;4340;4341	4341	452	4	9606
MELITILEK	Acetyl (Protein N-term)	1130.6257	0.62569758	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	2	0		1				25.499	25.499	2	0.0017559	24311	DP1145_7	94.309	94.309			7158700	1846	478	1730	3019	4342;4343	4343		2	9606
MELSDANLQTLTEYLK	Acetyl (Protein N-term);Oxidation (M)	1925.9292	0.92920941	322	P55060	CSE1L	Exportin-2	yes	yes	1	1	0	2	0		1				23.839	23.839	2	0	21993	DP1145_7	314.35	281.35			12275000	1847	322	1731	3020	4344;4345;4346	4344	292	3	9606
MELSDANLQTLTEYLKK	Acetyl (Protein N-term);Oxidation (M)	2054.0242	0.024172425	322	P55060	CSE1L	Exportin-2	yes	yes	1	1	1	1.5	0.5	1	1				22.008	22.008	2	2.8236E-18	16972	DP1145_6	153.75	92.273			4204200	1848	322	1732	3021;3022	4347;4348	4347	292	2	9606
MELSDANLQTLTEYLKK	Acetyl (Protein N-term)	2038.0293	0.029257803	322	P55060	CSE1L	Exportin-2	yes	yes	1	0	1	2	0		1				22.979	22.979	2	4.4109E-48	20711	DP1145_7	193.11	111.44			0	1849	322	1732	3023	4349	4349		1	9606
MEPLQQQQQQQQQQQKQPHLAPLQMDAR	2 Oxidation (M)	3414.6521	0.6521039	572	Q8IVW6	ARID3B	AT-rich interactive domain-containing protein 3B	yes	yes	0	2	1	3	0			1			17.479	17.479	3	0.0053931	12456	DP1145_8	50.498	22.094			96491000	1850	572	1733	3024	4350	4350	499;500	1	9606
MERGGGGSGTGSRPEGTAR	Acetyl (Protein N-term);Oxidation (M)	1876.8446	0.84458535	642	Q96T17	MAP7D2	MAP7 domain-containing protein 2	yes	yes	1	1	2	4.5	0.5				1	1	23.356	23.356	2	0.0025981	19791	DP1145_9	77.644	45.801			20708000	1851	642	1734	3025;3026	4351;4352;4353;4354	4353	554	4	9606
METILEQQR	Acetyl (Protein N-term);Oxidation (M)	1204.5758	0.57578728	433	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	1	1	0	3	0			1			18.123	18.123	2	0.020067	12877	DP1145_8	60.59	35.016			20125000	1852	433	1735	3027	4355	4355	379	1	9606
METQLQSIFEEVVK	Acetyl (Protein N-term);Oxidation (M)	1737.8495	0.84950252	755	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	1	1	0	2	0		1				24.374	24.374	2	1.3893E-05	22804	DP1145_7	124.12	73.111			1745600	1853	755	1736	3028	4356;4357	4356	626	2	9606
MEVKPPPGRPQPDSGR	Acetyl (Protein N-term);Oxidation (M)	1804.889	0.88901635	306	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	1	1	2	4	0				1		14.274	14.274	3	0.0014481	6024	DP1145_9	93.237	74.873			55465000	1854	306	1737	3029	4358;4359	4359	276	2	9606
MEVVEAAAAQLETLK	Acetyl (Protein N-term);Oxidation (M)	1659.8389	0.83893784	626	Q96HR8	NAF1	H/ACA ribonucleoprotein complex non-core subunit NAF1	yes	yes	1	1	0	3	0			1			24.342	24.342	2	0.0027626	21898	DP1145_8	80.312	49.762			2697400	1855	626	1738	3030	4360;4361	4361	533	2	9606
MFGMVLEK	2 Oxidation (M)	985.46127	0.46127479	322	P55060	CSE1L	Exportin-2	yes	yes	0	2	0	2	0		1				16.226	16.226	2	0.045714	10603	DP1145_7	58.917	7.9513			19587000	1856	322	1739	3031	4362	4362	293;294	0	9606
MGAGMGFGLER	2 Oxidation (M)	1156.5005	0.50051385	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			16.34	16.34	2	0.041873	10005	DP1145_8	51.268	36.598			56094000	1857	307	1740	3032	4363	4363	278;279	0	9606
MGGMVSFR	Oxidation (M)	899.39934	0.39934324	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					16.3	16.3	2	0.035595	8217	DP1145_6	75.109	32.109			73029000	1858	438	1741	3033	4364	4364	400	1	9606
MGGMVSFR	Unmodified	883.40443	0.40442862	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.254	17.254	2	0.027385	9705	DP1145_6	104.21	48.768			105170000	1859	438	1741	3034	4365	4365		0	9606
MGIYYIPVLGPAPR	Unmodified	1545.8378	0.83775605	660	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1	0	1					21.544	21.544	2	0.0054116	16309	DP1145_6	96.034	68.603			5015200	1860	660	1742	3035	4366	4366		1	9606
MGPLGLDHMASSIER	2 Oxidation (M)	1644.76	0.75997601	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	2	0	3	0			1			16.116	16.116	3	0.0035753	9675	DP1145_8	83.856	55.803			138090000	1861	307	1743	3036	4367;4368	4368	280;281	2	9606
MGVEIETISPGDGRTFPKK	Acetyl (Protein N-term);Oxidation (M)	2119.062	0.061954915	392	P68106	FKBP1B	Peptidyl-prolyl cis-trans isomerase FKBP1B	yes	yes	1	1	2	5	0					1	22.553	22.553	2	0.033174	18275	DP1145_10	45.28	15.074			21581000	1862	392	1744	3037	4369	4369	333	1	9606
MHLYLGAAK	Oxidation (M)	1018.527	0.52698659	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	1	0	1	0	1					14.92	14.92	2	7.6672E-11	5954	DP1145_6	151.17	108.57			6124800	1863	41;438	1745	3038	4370;4371;4372;4373	4371	36	4	9606
MHLYLGAAK	Unmodified	1002.5321	0.53207197	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					16.051	16.051	2	0.0023917	7758	DP1145_6	114.19	114.19			396630000	1864	41;438	1745	3039	4374;4375;4376	4376		3	9606
MIAGQVLDINLAAEPK	Oxidation (M)	1697.9022	0.9022068	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	1	0	4	0				1		19.623	19.623	2	9.6975E-19	14283	DP1145_9	147.96	95.466			106750000	1865	133	1746	3040	4377	4377	129	0	9606
MIPPTKPEIQAK	Oxidation (M)	1367.7483	0.74827234	574	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	1	1	2	0		1				14.13	14.13	3	0.012558	7420	DP1145_7	86.463	55.395			3905500	1866	574	1747	3041	4378;4379	4379	503	2	9606
MISRMEK	Acetyl (Protein N-term);Oxidation (M)	951.45177	0.45177274	439	Q13103	SPP2	Secreted phosphoprotein 24	yes	yes	1	1	1	2	0		1				22.691	22.691	2	0.030157	20370	DP1145_7	97.068	27.635			25201000	1867	439	1748	3042	4380	4380	417	1	9606
MISSCTTRKMAEQEQR	Acetyl (Protein N-term);Oxidation (M)	2012.9078	0.90777923	539	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	1	1	2	5	0					1	16.104	16.104	2	0.0016585	8656	DP1145_10	90.827	41.361			22078000	1868	539	1749	3043	4381	4381	478	1	9606
MIVDPVEPHGEMK	2 Oxidation (M)	1512.6953	0.69525049	444	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	2	0	2	0		1				14.844	14.844	3	0.038412	8376	DP1145_7	43.405	16.462			9653100	1869	444	1750	3044	4382	4382	421;422	0	9606
MKEEQVQGPVELLSIPEDAPEKDWTSR	Oxidation (M)	3126.5179	0.51794463	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	1	2	2	0		1				19.763	19.763	3	2.8235E-14	15991	DP1145_7	121.48	105.51			24626000	1870	688	1751	3045	4383	4383	579	1	9606
MKEIAEAYLGK	Oxidation (M)	1267.6482	0.64822394	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			2			15.756	15.756	2;3	1.0236E-39	8991	DP1145_8	166.69	97.846			212710000	1871	154	1752	3046;3047	4384;4385	4385	149	1	9606
MKEIAEAYLGK	Unmodified	1251.6533	0.65330932	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			1			16.54	16.54	2	0.0069811	10437	DP1145_8	130.94	58.71			211920000	1872	154	1752	3048	4386	4386		1	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	Oxidation (M)	3275.6173	0.61726475	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	1	3	0			1			21.524	21.524	3	3.1594E-08	17843	DP1145_8	95.746	82.46			119690000	1873	148	1753	3049	4387;4388	4387	141	2	9606
MKEIAEAYLGYPVTNAVITVPAYFNDSQR	Unmodified	3259.6224	0.62235013	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	3	0			1			21.818	21.818	3	8.3971E-07	18355	DP1145_8	93.236	72.753			45529000	1874	148	1753	3050	4389	4389		0	9606
MKETAENYLGHTAK	Unmodified	1591.7664	0.7664416	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	3	0			1			14.431	14.431	3	2.0257E-87	6979	DP1145_8	223.58	172.57			64555000	1875	254	1754	3051	4390;4391	4390		2	9606
MKGTLIDNQFK	Oxidation (M)	1309.67	0.67002202	690	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	1	1	4	0				1		15.413	15.413	3	0.023473	7875	DP1145_9	79.659	19.502			26569000	1876	690	1755	3052	4392	4392	580	1	9606
MKLDYILGLK	Oxidation (M)	1208.6839	0.68388117	281	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	1	1	5	0					1	18.448	18.448	2	0.00031965	12293	DP1145_10	135.55	67.325			61076000	1877	281	1756	3053	4393	4393	265	1	9606
MKLNISFPATGCQK	Oxidation (M)	1609.7956	0.79563323	370	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	4	0				1		16.923	16.923	3	0.0068113	10012	DP1145_9	108.32	83.603			103310000	1878	370	1757	3054	4394	4394	315	0	9606
MKLPEHPEGGEPEDDEAPAK	Oxidation (M)	2190.9739	0.97392777	720	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	1	1	3	0			1			14.231	14.231	4	0.039992	6908	DP1145_8	45.916	28.555			11019000	1879	720	1758	3055	4395	4395	604	1	9606
MKPILLQGHER	Unmodified	1320.7336	0.73362533	445	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	1	4	0				1		14.704	14.704	3	0.039304	6653	DP1145_9	83.045	32.593			14957000	1880	445	1759	3056	4396	4396		0	9606
MKRHEMVAK	Acetyl (Protein N-term);Oxidation (M)	1186.5951	0.59508293	422	Q03924	ZNF117	Zinc finger protein 117	yes	yes	1	1	2	5	0					1	14.953	14.953	2	0.0085346	6947	DP1145_10	75.738	13.08			456280000	1881	422	1760	3057	4397	4397	375	1	9606
MKTEAELAKEEQEHLR	Oxidation (M)	1956.9575	0.95748984	396	P78316	NOP14	Nucleolar protein 14	yes	yes	0	1	2	2	0		1				14.943	14.943	4	0.010268	8419	DP1145_7	107.74	81.79			75804000	1882	396	1761	3058	4398	4398	342	0	9606
MKVELCSFSGYK	Oxidation (M)	1463.6789	0.67887214	407	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	1	1	5	0					1	16.686	16.686	2	0.019143	9468	DP1145_10	100.09	55.768			75294000	1883	407	1762	3059	4399	4399	365	1	9606
MLDMGDRKEVK	2 Oxidation (M)	1352.6428	0.64282099	328	P55316	FOXG1	Forkhead box protein G1	yes	yes	0	2	2	3	0			1			19.168	19.168	2	0.012998	14454	DP1145_8	87.149	28.45			0	1884	328	1763	3060	4400	4400	296;297	1	9606
MLGPEGGEGFVVK	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	310	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	1	0	4	0				1		20.059	20.059	2	0.0023408	14964	DP1145_9	85.355	55.419			11429000	1885	310	1764	3061	4401	4401	284	1	9606
MLIYDPAKR	Oxidation (M)	1121.5903	0.59031513	122	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	1	1	4	0				1		15.473	15.473	2	0.020981	7834	DP1145_9	81.548	22.766			17545000	1886	122	1765	3062	4402	4402	104	0	9606
MLLEEVRAGDR	Acetyl (Protein N-term);Oxidation (M)	1345.666	0.66599927	327	P55273	CDKN2D	Cyclin-dependent kinase 4 inhibitor D	yes	yes	1	1	1	3	0			1			17.755	17.755	2	0.044696	12292	DP1145_8	46.129	8.3171			0	1887	327	1766	3063	4403	4403	295	1	9606
MLPTIIADNAGYDSADLVAQLR	Oxidation (M)	2362.1839	0.18386096	400	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	3	0			1			21.749	21.749	2	2.0452E-27	18171	DP1145_8	151.56	117.38			0	1888	400	1767	3064	4404	4404	343	1	9606
MLQPCGPPADKPEEN	Oxidation (M)	1697.7389	0.73890622	669	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	1	1	5	0					1	15.097	15.097	2	0.019997	7050	DP1145_10	91.937	57.164			0	1889	669	1768	3065	4405	4405	571	1	9606
MLSALLTGVNR	Oxidation (M)	1189.6489	0.64889264	421	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	1	0	2	0		1				18.398	18.398	2	0.021528	14067	DP1145_7	72.607	35.058			99347000	1890	421	1769	3066	4406	4406	374	1	9606
MLTGPVYSQSTALTHK	Oxidation (M)	1748.8767	0.87672033	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	1	0	1.5	0.5	1	1				16.227	16.227	2;3	2.5622E-05	7972	DP1145_6	127.07	106.96			59821000	1891	566	1770	3067;3068	4407;4408	4407	494	2	9606
MLTGPVYSQSTALTHK	Unmodified	1732.8818	0.8818057	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				16.796	16.796	3	0.038279	11485	DP1145_7	42.059	17.353			72362000	1892	566	1770	3069	4409	4409		1	9606
MMGHRPVLVLSQNTK	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	291	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	2	1	3	0			1			15.656	15.656	3	0.0064395	9010	DP1145_8	66.784	42.497			36185000	1893	291	1771	3070	4410	4410	269;270	1	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	2 Oxidation (M)	2881.2146	0.21458552	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					20.255	20.255	3	1.2531E-26	14367	DP1145_6	148.52	141.36			195580000	1894	438	1772	3071	4411;4412;4413	4412	401;402	3	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	Oxidation (M)	2865.2197	0.2196709	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					20.641	20.641	3	2.1421E-08	14937	DP1145_6	117.35	114.94			135280000	1895	438	1772	3072	4414;4415;4416;4417	4415	401;402	4	9606
MMYGVSPWGDSPIDFEDSAHVPCPR	Unmodified	2849.2248	0.22475628	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.997	20.997	3	1.9549E-05	15603	DP1145_6	98.3	88.467			36447000	1896	438	1772	3073	4418	4418		1	9606
MNDTVTIR	Acetyl (Protein N-term);Oxidation (M)	1006.4753	0.47534495	375	P62847	RPS24	40S ribosomal protein S24	yes	yes	1	1	0	5	0					1	16.686	16.686	1	0.00064393	9467	DP1145_10	131.03	65.134			64879000	1897	375	1773	3074	4419	4419	320	1	9606
MNGDDAFAKR	Acetyl (Protein N-term);Oxidation (M)	1181.5135	0.51352137	555	Q7RTT4;Q7RTT6	SSX8;SSX6	Protein SSX8;Putative protein SSX6	yes	no	1	1	1	2	0		1				19.323	19.323	2	0.035341	15360	DP1145_7	55.531	16.568			0	1898	555	1774	3075	4420	4420	487	1	9606
MNVLADALK	Unmodified	973.52665	0.52665224	356	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					1	18.648	18.648	2	0.015766	12607	DP1145_10	91.069	41.479			29368000	1899	356	1775	3076	4421	4421		1	9606
MPCQSLQPEPINTPTHTK	Oxidation (M)	2093.9874	0.98740976	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1.5	0.5	1	1				15.412	15.412	3	1.1717E-07	6806	DP1145_6	130.64	97.645			150320000	1900	276	1776	3077;3078	4422;4423;4424	4422	250	3	9606
MPCTEDYLSLILNR	Oxidation (M)	1739.8222	0.82224192	10	CON__P02769			yes	yes	0	1	0	4	0				1		22.083	22.083	2	0.0348	17781	DP1145_9	81.625	43.058		+	0	1901	10	1777	3079	4425	4425	5	1	
MPGGPKPGGGPGLSTPGGHPKPPHR	Oxidation (M)	2385.2124	0.21241617	203	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	1	2	2	0		2				13.874	13.874	4;5	2.0081E-07	6902	DP1145_7	112.82	89.166			34100000	1902	203	1778	3080;3081	4426;4427;4428;4429	4428	202	4	9606
MPIIPFLL	Unmodified	942.56125	0.56124683	727	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	1	0	1					26.123	26.123	1	0.0016275	22673	DP1145_6	110.43	51.452			5366700	1903	727	1779	3082	4430	4430		1	9606
MPIIPFLL	Oxidation (M)	958.55616	0.55616146	727	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	1	0	1	0	1					24.858	24.858	1	0.020359	21181	DP1145_6	72.054	54.145			10059000	1904	727	1779	3083	4431	4431	609	0	9606
MPVIKPDIANWELSVK	Oxidation (M)	1854.9914	0.99135615	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	2.33	0.943	1		2			19.336	19.336	2;3	3.2623000000000004E-193	14663	DP1145_8	242.4	168.56			401230000	1905	115	1780	3084;3085;3086	4432;4433;4434;4435;4436;4437	4434	91	5	9606
MQASIEKGGSLPKVEAK	Oxidation (M)	1787.9451	0.94513424	127	P06748	NPM1	Nucleophosmin	yes	yes	0	1	2	4	0				1		14.574	14.574	3	0.015435	6404	DP1145_9	97.129	40.095			10311000	1906	127	1781	3087	4438	4438	110	0	9606
MQEHSDQVPVGNIPR	Oxidation (M)	1721.8155	0.81551705	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	1	0	2	0		1				15.409	15.409	3	0.024473	9310	DP1145_7	59.864	38.033			53458000	1907	236	1782	3088	4439	4439	222	1	9606
MQLDNPSKVQQAELHTGSLPR	Oxidation (M)	2364.1856	0.1855923	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					16.142	16.142	4	0.0051824	7909	DP1145_6	72.421	52.33			20666000	1908	438	1783	3089	4440	4440	403	1	9606
MQLPSAAGLHPTGHQSK	Oxidation (M)	1774.8785	0.87845166	486	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	1	0	4	0				2		14.375	14.375	3;4	8.8783E-05	6251	DP1145_9	122.16	82.649			58761000	1909	486	1784	3090;3091	4441;4442;4443	4441	456	3	9606
MQSDDVIWDTLGNK	Acetyl (Protein N-term)	1662.7559	0.75593649	673	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	1	0	0	4	0				1		23.083	23.083	2	4.1675E-08	19250	DP1145_9	160.72	119.56			7180200	1910	673	1785	3092	4444;4445	4444		2	9606
MREIVHLQAGQCGNQIGAK	Unmodified	2109.0572	0.057161084	395	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	yes	no	0	0	1	3	0			1			15.718	15.718	3	0.016432	9139	DP1145_8	86.005	0			72292000	1911	395	1786	3093	4446	4446		1	9606
MSATFIGNSTAIQELFK	Oxidation (M)	1872.9291	0.92914983	395;460	P68371;Q13885;Q9BVA1	TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	1	0	2	1	1		1			21.643	21.643	2	1.0955E-60	16452	DP1145_6	185.57	35.432			510630000	1912	395;460	1787	3094;3095	4447;4448;4449;4450	4447	341	4	9606
MSATFIGNSTAIQELFK	Unmodified	1856.9342	0.93423521	395;460	P68371;Q13885;Q9BVA1	TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	3	0			2			21.871	21.871	2	0	18723	DP1145_8	306.44	47.786			369340000	1913	395;460	1787	3096;3097	4451;4452;4453	4453		3	9606
MSCGNEFVETLK	Acetyl (Protein N-term);Oxidation (M)	1471.6323	0.63231588	535	Q68CZ6	HAUS3	HAUS augmin-like complex subunit 3	yes	yes	1	1	0	1	0	1					23.713	23.713	2	0.044255	19439	DP1145_6	45.368	12.953			0	1914	535	1788	3098	4454	4454	474	1	9606
MSDQDHSMDEMTAVVKIEK	Acetyl (Protein N-term);2 Oxidation (M)	2266.9756	0.97558403	134	P08047	SP1	Transcription factor Sp1	yes	yes	1	2	1	2	0		1				14.89	14.89	3	0.043028	8453	DP1145_7	43.261	19.219			0	1915	134	1789	3099	4455	4455	130;131	1	9606
MSGECAPNVSVSVSTSHTTISGGGSR	Oxidation (M)	2580.1544	0.1544281	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	2	1	1		1			16.164	16.164	3	8.805E-91	7953	DP1145_6	197.69	171.67		+	106700000	1916	11	1790	3100;3101	4456;4457;4458	4456	9	3	9606
MSIEIESSDVIRLIMQYLK	Oxidation (M)	2283.1854	0.18544087	512	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	1	1	2	0		1				13.83	13.83	4	0.042111	6991	DP1145_7	47.548	18.456			6882200	1917	512	1791	3102	4459	4459	466	1	9606
MSLIILTR	Acetyl (Protein N-term);Oxidation (M)	1003.5736	0.57360243	332	P56555	DSCR4	Down syndrome critical region protein 4	yes	yes	1	1	0	3	0			1			20.042	20.042	2	0.016424	15747	DP1145_8	84.244	15.457			0	1918	332	1792	3103	4460	4460	298	1	9606
MSMKEVDEQMLNVQNK	3 Oxidation (M)	1970.8747	0.87474777	395;131;460	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	3	1	3	0			2			14.599	14.599	2;3	1.2238E-35	7245	DP1145_8	161.04	147.08			0	1919	131;395;460	1793	3104;3105	4461;4462	4461	120;127;128	2	9606
MSNVTLRKMSPTGNEMK	Acetyl (Protein N-term);2 Oxidation (M)	1996.938	0.93801673	90	O95171	SCEL	Sciellin	yes	yes	1	2	2	4	0				1		21.071	21.071	2	0.04136	16318	DP1145_9	43.544	12.358			0	1920	90	1794	3106	4463	4463	70;71	1	9606
MSQVAPSLSALIGEAVGAR	Oxidation (M)	1871.9775	0.977497	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	1	0	2	1	1		1			22.41	22.41	2	2.6105E-78	19161	DP1145_8	196.33	159.19			77893000	1921	38	1795	3107;3108	4464;4465	4465	28	2	9606
MSTSPEAFLALR	Oxidation (M)	1337.6649	0.66493664	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					19.535	19.535	2	0.018762	13216	DP1145_6	73.067	34.774			8063100	1922	401	1796	3109	4466	4466	355	1	9606
MSTSPEAFLALR	Unmodified	1321.67	0.67002202	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.029	20.029	2	0.034219	14023	DP1145_6	94.409	50.758			0	1923	401	1796	3110	4467	4467		1	9606
MSVQPTVSLGGFEITPPVVLR	Oxidation (M)	2242.2031	0.20313984	127	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	3.25	1.2	1	1	2	3	1	22.127	22.127	2;3	0	19447	DP1145_7	323.59	297.06			5349500000	1924	127	1797	3111;3112;3113;3114;3115;3116;3117;3118	4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490	4472	115	23	9606
MSVQPTVSLGGFEITPPVVLR	Unmodified	2226.2082	0.20822522	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3.6	1.02		1	1	2	1	22.473	22.473	2;3	0	18415	DP1145_9	346.42	327.68			1108200000	1925	127	1797	3119;3120;3121;3122;3123	4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508	4505		18	9606
MSWLFGINK	Acetyl (Protein N-term);Oxidation (M)	1152.5638	0.56376603	718	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	1	1	0	4	0				1		18.972	18.972	2	0.02292	13386	DP1145_9	76.035	23.632			17922000	1926	718	1798	3124	4509	4509	598	0	9606
MTDQEAIQDLWQWR	Oxidation (M)	1834.8308	0.83083277	127	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	3.62	1.22	1		2	3	2	21.753	21.753	2;3	0	17224	DP1145_10	347.76	294.16			5301200000	1927	127	1799	3125;3126;3127;3128;3129;3130;3131;3132	4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534	4510	116	24	9606
MTDQEAIQDLWQWR	Unmodified	1818.8359	0.83591814	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3.33	0.943		1		2		22.582	22.582	2;3	2.3113E-166	18515	DP1145_9	204.18	159.57			853690000	1928	127	1799	3133;3134;3135	4535;4536;4537;4538;4539;4540;4541	4539		7	9606
MTENSTSAPAAKPK	Acetyl (Protein N-term);Oxidation (M)	1489.7083	0.70825802	130	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	yes	yes	1	1	1	4	0				1		13.445	13.445	2	0.028288	4839	DP1145_9	43.084	8.392			191300	1929	130	1800	3136	4542	4542	117	0	9606
MTLDDFR	Oxidation (M)	912.40112	0.40111738	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	2	0.816	1	1	1			16.654	16.654	2	3.362E-16	8769	DP1145_6	157.99	120.83		+	138290000	1930	17	1801	3137;3138;3139	4543;4544;4545;4546	4543	13	4	9606
MTSLYGRHAEKTTDMPK	Acetyl (Protein N-term);2 Oxidation (M)	2038.9452	0.9452106	573	Q8IWB9	TEX2	Testis-expressed sequence 2 protein	yes	yes	1	2	2	4	0				1		23.962	23.962	2	0.044278	20511	DP1145_9	40.377	24.285			0	1931	573	1802	3140	4547	4547	501;502	1	9606
MVAAVACAQVPK	Oxidation (M)	1259.6366	0.6366134	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2.67	1.25	1		1	1		15.485	15.485	2	3.1495E-24	6909	DP1145_6	162.49	112.04			1820799999.9999998	1932	700	1803	3141;3142;3143	4548;4549;4550;4551;4552;4553;4554;4555	4548	587	8	9606
MVAAVACAQVPK	Unmodified	1243.6417	0.64169877	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			16.271	16.271	2	4.8497E-11	10013	DP1145_8	140.5	78.394			1191200000	1933	700	1803	3144;3145	4556;4557;4558	4558		2	9606
MVEAAPPGPGPLR	Acetyl (Protein N-term);Oxidation (M)	1348.6809	0.68092105	734	Q9P1Y5	CAMSAP3	Calmodulin-regulated spectrin-associated protein 3	yes	yes	1	1	0	1	0	1					22.107	22.107	2	0.044785	17080	DP1145_6	45.137	6.5694			0	1934	734	1804	3146	4559	4559	611	1	9606
MVEMQKDPMEPPR	2 Oxidation (M)	1618.7153	0.715334	457	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	2	1	3	0			1			14.331	14.331	3	0.025437	6592	DP1145_8	54.524	38.499			4253000	1935	457	1805	3147	4560	4560	429;430	0	9606
MVFLPLK	Acetyl (Protein N-term);Oxidation (M)	904.50921	0.50921126	728	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	1	1	0	4	0				1		16.446	16.446	2	0.020157	8956	DP1145_9	72.62	21.654			42552000	1936	728	1806	3148	4561	4561	610	0	9606
MVIITGPPEAQFK	Oxidation (M)	1445.7588	0.75883702	32;729	Q9NZI8;Q9Y6M1;O00425	IGF2BP1;IGF2BP2;IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 2;Insulin-like growth factor 2 mRNA-binding protein 3	no	no	0	1	0	3	0			1			18.192	18.192	2	0.00099958	12975	DP1145_8	109.16	83.77			29183000	1937	729;32	1807	3149	4562	4562	22	1	9606
MVIITGPPEAQFK	Unmodified	1429.7639	0.7639224	32;729	Q9NZI8;Q9Y6M1;O00425	IGF2BP1;IGF2BP2;IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 2;Insulin-like growth factor 2 mRNA-binding protein 3	no	no	0	0	0	3	0			1			19.024	19.024	2	0.015263	14312	DP1145_8	82.494	37.741			42409000	1938	729;32	1807	3150	4563	4563		1	9606
MVLCSQQWK	Oxidation (M)	1194.5525	0.55254942	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	1	0	2	0		1				16.175	16.175	2	0.02065	10527	DP1145_7	79.713	46.9			42827000	1939	184	1808	3151	4564	4564	183	1	9606
MVLLPVMK	Oxidation (M)	945.53913	0.53913118	641	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	1	0	3	0			1			19.225	19.225	2	0.036422	14494	DP1145_8	74.832	28.461			6897200	1940	641	1809	3152	4565	4565	553	1	9606
MVNHFIAEFK	Oxidation (M)	1250.6118	0.61177885	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			2			16.947	16.947	2;3	2.7412E-07	11060	DP1145_8	140.17	93.351			273180000	1941	154	1810	3153;3154	4566;4567;4568	4568	150	3	9606
MVPEEEPQDREK	Acetyl (Protein N-term);Oxidation (M)	1543.6824	0.6824372	598	Q8WTT0	CLEC4C	C-type lectin domain family 4 member C	yes	yes	1	1	1	5	0					1	21.287	21.287	2	0.032715	16408	DP1145_10	60.019	23.335			0	1942	598	1811	3155	4569	4569	517	1	9606
MVQEAEKYKAEDEVQR	Oxidation (M)	1967.9259	0.92585536	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	1	2	2.33	0.943	1		2			14.031	14.031	3;4	0.023454	6520	DP1145_8	68.944	33.053			44052000	1943	148	1812	3156;3157;3158	4570;4571;4572	4572	142	2	9606
MWVQLLIPR	Unmodified	1154.6634	0.66342049	343	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		21.997	21.997	2	0.035936	17704	DP1145_9	77.741	36.311			3665000	1944	343	1813	3159	4573	4573		1	9606
MYVPALIFGQLLTSSNYDDDEKK	Oxidation (M)	2662.2836	0.28363459	157	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	1	2	0		1				22.2	22.2	3	0.031952	19552	DP1145_7	53.585	20.788			0	1945	157	1814	3160	4574	4574	157	1	9606
NAAENMLEILGFK	Unmodified	1448.7334	0.73335055	100	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	3	0			1			23.474	23.474	2	3.7731E-08	20650	DP1145_8	150.46	113.87			15980000	1946	100	1815	3161	4575;4576	4575		2	9606
NAAPPPSNTEAPPGETR	Unmodified	1704.8067	0.80672651	680	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	0		1				14.198	14.198	2	4.1522E-18	7519	DP1145_7	168.82	140.25			13420000	1947	680	1816	3162	4577;4578	4577		2	9606
NAEPDEQDFEK	Unmodified	1320.547	0.54698957	467	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				15.539	15.539	2	1.0198E-12	9598	DP1145_7	148.69	101.03			84524000	1948	467	1817	3163	4579	4579		1	9606
NAGNCLSPAVIVGLLK	Unmodified	1624.8971	0.89706184	54	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3.5	0.5			1	1		21.823	21.823	2	4.5769E-07	17519	DP1145_9	134.13	102.64			37951000	1949	54	1818	3164;3165	4580;4581;4582	4581		3	9606
NAHSATTWSGQYVGGAEAR	Unmodified	1961.898	0.89800113	23	CON__Streptavidin			yes	yes	0	0	0	4.39	1.28	3	2	1	2	28	22.346	22.346	2;3;4	0	30854	DP1145_10	368.4	338.37		+	94414000000	1950	23	1819	3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197;3198;3199;3200;3201	4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617;4618;4619;4620;4621;4622;4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633;4634;4635;4636;4637;4638;4639;4640;4641;4642;4643;4644	4603		60	
NALESYAFNMK	Oxidation (M)	1302.5914	0.59143734	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3	0			1			17.923	17.923	2	0.03031	12710	DP1145_8	68.016	41.973			992650000	1951	148	1820	3202	4645	4645	143	1	9606
NALESYAFNMK	Unmodified	1286.5965	0.59652272	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			1			19.124	19.124	2	8.4716E-79	14361	DP1145_8	203.29	170.47			146630000	1952	148	1820	3203	4646;4647	4646		2	9606
NAPAIIFIDELDAIAPK	Unmodified	1809.9877	0.98765098	323	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	0		1				23.99	23.99	2	0.0077708	22151	DP1145_7	112.08	85.954			7996400	1953	323	1821	3204	4648;4649;4650;4651	4651		4	9606
NAPNDASYDAVR	Unmodified	1291.5793	0.57929275	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					15.046	15.046	2	0.0063767	6431	DP1145_6	94.409	61.569			16925000	1954	608	1822	3205	4652;4653	4653		2	9606
NAPWTLTPEFLAEHR	Unmodified	1780.8897	0.88966827	293	P49585	PCYT1A	Choline-phosphate cytidylyltransferase A	yes	yes	0	0	0	4	0				1		20.062	20.062	3	0.011532	14900	DP1145_9	74.257	50.837			4122500	1955	293	1823	3206	4654	4654		1	9606
NASTAKK	Unmodified	718.39735	0.39735263	295	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	1	1	0	1					21.027	21.027	1	0.037752	15594	DP1145_6	46.37	10.185			4518900	1956	295	1824	3207	4655	4655		0	9606
NAVITVPAYFNDSQR	Unmodified	1693.8424	0.84238373	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.424	19.424	2	0.0040269	14932	DP1145_8	136.93	82.446			167560000	1957	254	1825	3208	4656	4656		1	9606
NAVPITPTLNR	Unmodified	1194.6721	0.67207093	8	CON__P02663			yes	yes	0	0	0	4	0				1		16.823	16.823	2	0.0028559	9903	DP1145_9	106.42	64.975		+	34075000	1958	8	1826	3209	4657	4657		1	
NCLTNFHGMDLTR	Oxidation (M)	1593.7028	0.70279548	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	1	0	4	0				1		16.523	16.523	3	0.022908	9514	DP1145_9	61.212	27.029			462790000	1959	341	1827	3210	4658	4658	307	1	9606
NCPHVVVGTPGR	Unmodified	1291.6455	0.6455386	25	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	2	1	1		1			14.187	14.187	3	0.031185	5051	DP1145_6	72.731	25.544			9124200	1960	25	1828	3211;3212	4659;4660	4659		1	9606
NDEELNKLLGK	Unmodified	1271.6721	0.67213051	146	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	yes	no	0	0	1	5	0					1	17.647	17.647	3	0.024677	11186	DP1145_10	85.807	45.08			154730000	1961	146	1829	3213	4661	4661		0	9606
NDHLTSTTSSPGVIVPESSENK	Unmodified	2298.0975	0.097548378	79	O75496	GMNN	Geminin	yes	yes	0	0	0	4	0				1		16.149	16.149	3	0.0059393	8909	DP1145_9	69.581	46.288			31656000	1962	79	1830	3214	4662	4662		1	9606
NDLAVVDVR	Unmodified	999.53491	0.53490874	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			17.092	17.092	2	9.543900000000001E-25	11961	DP1145_7	168.26	75.115			1279800000	1963	194	1831	3215;3216	4663;4664;4665	4663		3	9606
NDLSPASSGNAVYDFFIGR	Unmodified	2028.9541	0.95411902	477	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					22.656	22.656	2	0	17863	DP1145_6	312.91	261.82			25942000	1964	477	1832	3217	4666;4667;4668	4666		3	9606
NEEPSEEEIDAPKPK	Unmodified	1710.7948	0.79482442	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	1.5	0.5	1	1				14.845	14.845	3	0.0051609	6072	DP1145_6	109.1	76.774			77371000	1965	709	1833	3218;3219	4669;4670;4671;4672	4670		4	9606
NEGNIFPNPEATFVK	Unmodified	1675.8206	0.82058566	783	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	0	1					19.755	19.755	2	0.00025564	13695	DP1145_6	132.5	104.33			32046000	1966	783	1834	3220	4673	4673		1	9606
NFDLTAIPCANHK	Unmodified	1499.7191	0.71909747	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.954	17.954	2	0.021745	10993	DP1145_6	77.379	53.528			338670000	1967	438	1835	3221	4674	4674		1	9606
NFGIGQDIQPK	Unmodified	1215.6248	0.62478638	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	2.5	1.5	1			1		17.538	17.538	2	2.3046E-08	11135	DP1145_9	143.37	104.6			1203700000	1968	366	1836	3222;3223	4675;4676;4677;4678	4678		4	9606
NFILDQTNVSAAAQR	Unmodified	1646.8376	0.8376327	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1.5	0.5	1	1				18.645	18.645	2	2.5852E-23	11824	DP1145_6	158.4	74.9			0	1969	412	1837	3224;3225	4679;4680	4679		2	9606
NFLPILFNLYGQPVAAGDTPAPR	Unmodified	2470.3009	0.30088005	523	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	2	0		1				23.527	23.527	2	9.9064E-20	21539	DP1145_7	168.41	132.7			0	1970	523	1838	3226	4681	4681		1	9606
NFVLDNTDRK	Unmodified	1220.6149	0.61494998	577	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	1	1	0	1					15.413	15.413	3	0.00080052	6816	DP1145_6	109.79	67.547			0	1971	577	1839	3227	4682	4682		1	9606
NFYFLEMNTR	Oxidation (M)	1349.6074	0.60742176	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	1	0	1					19.621	19.621	2	0.038975	13413	DP1145_6	93.178	52.454			0	1972	115	1840	3228	4683	4683	92	1	9606
NFYFLEMNTR	Unmodified	1333.6125	0.61250714	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.725	20.725	2	0.0024443	16645	DP1145_8	122.33	87.574			202460000	1973	115	1840	3229	4684	4684		1	9606
NFYQEHPDLAR	Unmodified	1388.6473	0.64731274	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			2			16.026	16.026	2;3	6.1403E-07	9549	DP1145_8	136.52	94.514			588380000	1974	186	1841	3230;3231	4685;4686;4687;4688	4688		4	9606
NGIAFMGPPSQAMWALGDK	2 Oxidation (M)	2021.9339	0.93391763	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	1	0	1					19.755	19.755	2	0.029445	13774	DP1145_6	68.044	37.155			91321000	1975	438	1842	3232	4689	4689	404;405	1	9606
NGIAFMGPPSQAMWALGDK	Unmodified	1989.9441	0.94408839	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					21.794	21.794	2	5.3612E-08	16667	DP1145_6	135.86	115.75			12311000	1976	438	1842	3233	4690;4691;4692	4690		3	9606
NGIDILVGTPGR	Unmodified	1210.667	0.66698555	709;652	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	1.5	0.5	1	1				19.017	19.017	2	2.1267E-100	14906	DP1145_7	208.15	138.34			72412000	1977	709;652	1843	3234;3235	4693;4694	4694		2	9606
NGPLEVAGAAVSAGHGLPAK	Unmodified	1814.9639	0.96389585	76	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	4	0				2		17.923	17.923	2;3	0.00026289	11541	DP1145_9	113.54	74.665			36879000	1978	76	1844	3236;3237	4695;4696	4696		2	9606
NGQDLGVAFK	Unmodified	1047.5349	0.53490874	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1.5	0.5	1	1				16.945	16.945	2	0.00084739	9266	DP1145_6	101.64	70.009			354400000	1979	412	1845	3238;3239	4697;4698	4697		1	9606
NHDHQEIAVPVANLK	Unmodified	1683.8693	0.86926718	81	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	5	0					1	15.813	15.813	3	0.00055752	8281	DP1145_10	119.77	84.875			137930000	1980	81	1846	3240	4699;4700	4699		2	9606
NHPGLLLMDTTFR	Unmodified	1513.7711	0.77113304	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.5	0.5	1	1				19.261	19.261	3	0	15296	DP1145_7	241.15	171.81			959860000	1981	158	1847	3241;3242	4701;4702;4703	4703		3	9606
NHPGLLLMDTTFR	Oxidation (M)	1529.766	0.76604767	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0.816	1	1	1			17.992	17.992	3	2.1174E-12	13191	DP1145_7	144.28	76.15			609100000	1982	158	1847	3243;3244;3245	4704;4705;4706;4707	4705	168	3	9606
NIDDGTSDRPYSHALVAGIDR	Unmodified	2271.088	0.087986745	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	5	0					1	17.168	17.168	3	0.0058102	10417	DP1145_10	80.98	62.824			206910000	1983	345	1848	3246	4708	4708		1	9606
NIDDGTSDRPYSHALVAGIDRYPR	Unmodified	2687.3052	0.30519016	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	17.447	17.447	5	0.0087531	10611	DP1145_10	55.337	41.028			58796000	1984	345	1849	3247	4709	4709		0	9606
NIGNGIISSPLTGK	Unmodified	1369.7565	0.75652884	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	1	0	1					18.589	18.589	2	0.022357	11820	DP1145_6	91.961	52.414			0	1985	735	1850	3248	4710	4710		1	9606
NIIVGFAR	Unmodified	888.51814	0.51813647	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			18.123	18.123	2	5.687E-06	12872	DP1145_8	138.07	62.764			543740000	1986	116	1851	3249	4711	4711		1	9606
NILEESLCELVAK	Unmodified	1516.7807	0.78069468	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.213	22.213	2	0.0045319	17276	DP1145_6	111.27	35.166			12225000	1987	401	1852	3250	4712;4713;4714	4712		3	9606
NIPGITLLNVSK	Unmodified	1267.75	0.7499869	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			19.937	19.937	2	0.0038637	15569	DP1145_8	99.752	48.947			97472000	1988	250	1853	3251	4715	4715		1	9606
NIPLLFLQNITGFMVGR	Oxidation (M)	1948.0604	0.060438772	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	3.2	1.33	1		2	1	1	24.159	24.159	2;3	1.5585000000000002E-25	20782	DP1145_9	156	125.11			206200000	1989	700	1854	3252;3253;3254;3255;3256	4716;4717;4718;4719;4720;4721;4722;4723;4724;4725	4725	588	10	9606
NIPLLFLQNITGFMVGR	Unmodified	1932.0655	0.06552415	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.5	0.5			1	1		25.47	25.47	2;3	9.1479E-18	22558	DP1145_9	151.7	122.63			5311700	1990	700	1854	3257;3258	4726;4727;4728;4729	4729		4	9606
NIQGTITGDILPR	Unmodified	1396.7674	0.76742787	84	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1	0	1					19.245	19.245	2	0.010296	12840	DP1145_6	116.77	72.389			0	1991	84	1855	3259	4730	4730		1	9606
NIVEAAAVR	Unmodified	941.52943	0.52942943	377	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	5	0					1	15.713	15.713	2	0.0060886	8079	DP1145_10	116.73	35.429			364340000	1992	377	1856	3260	4731	4731		1	9606
NIVQHTTDSSLEEK	Unmodified	1599.774	0.77402939	688	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	3	0.894		2	1	2		14.718	14.718	2;3	6.1896E-123	8249	DP1145_7	212.09	164.9			365520000	1993	688	1857	3261;3262;3263;3264;3265	4732;4733;4734;4735;4736;4737	4733		6	9606
NIYAFMGTPVQK	Oxidation (M)	1383.6857	0.68567208	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		1				17.599	17.599	2	1.8027E-20	12697	DP1145_7	124.1	78.942			160830000	1994	276	1858	3266	4738	4738	251	0	9606
NKFPGDSVVTGR	Unmodified	1275.6571	0.65714914	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3.5	0.5			2	2		15.455	15.455	2;3	1.9937999999999998E-32	8782	DP1145_8	169.89	104.17			1052799999.9999999	1995	116	1859	3267;3268;3269;3270	4739;4740;4741;4742;4743	4741		5	9606
NKLDHYAIIK	Unmodified	1213.6819	0.68190733	369	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	5	0					2	15.191	15.191	2;3	0.0019124	7224	DP1145_10	131.44	46.376			119880000	1996	369	1860	3271;3272	4744;4745	4745		2	9606
NKNPAPPIDAVEQILPTLVR	Unmodified	2184.2267	0.22665248	308	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	1	4	0				1		21.525	21.525	3	0.0052464	17073	DP1145_9	101.61	86.094			5545700	1997	308	1861	3273	4746	4746		1	9606
NKPGPYSSVPPPSAPPPKK	Unmodified	1944.0469	0.046897198	479	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	2	2	0.707	1	2	1			14.039	14.039	3;4	0.00022435	7238	DP1145_7	120.99	81.217			98606000	1998	479	1862	3274;3275;3276;3277	4747;4748;4749;4750;4751;4752	4749		6	9606
NKPNMSDPEESRGNDELVK	Oxidation (M)	2173.991	0.99097482	482	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	1	2	2	0		1				13.436	13.436	3	0.0056475	6560	DP1145_7	83.751	42.663			453660	1999	482	1863	3278	4753	4753	455	1	9606
NKPQVPVPGSDISETQVER	Unmodified	2079.0596	0.059646729	619	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	yes	yes	0	0	1	4	0				1		16.523	16.523	3	5.3885E-37	9472	DP1145_9	166.21	140.87			159450000	2000	619	1864	3279	4754	4754		1	9606
NLDIERPTYTNLNR	Unmodified	1717.8747	0.87474649	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	1	2.6	1.02	1	1	2	1		17.144	17.144	2;3	7.7332E-122	11359	DP1145_8	210.44	134.88			5780100000	2001	393;550;394	1865	3280;3281;3282;3283;3284	4755;4756;4757;4758;4759;4760;4761	4759		6	9606
NLDLAVLELMQSSVDNTK	Oxidation (M)	2005.0038	0.003771334	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					20.859	20.859	2	4.5478E-27	15465	DP1145_6	158.89	108.11			23184000	2002	401	1866	3285	4762	4762	356	1	9606
NLDLAVLELMQSSVDNTK	Unmodified	1989.0089	0.0088567119	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	2					23.299	23.299	2	1.1021E-39	18830	DP1145_6	165.78	113.09			0	2003	401	1866	3286;3287	4763;4764	4763		2	9606
NLDLDSIIAEVK	Unmodified	1328.7187	0.71874635	18;108	P35908;CON__P35908;CON__P35908v2;P04259;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__P13647;P13647;CON__Q8VED5;CON__Q5XKE5;CON__O95678;Q5XKE5;O95678	KRT2;KRT6B;KRT6C;KRT6A;KRT5;KRT79;KRT75	Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 75	no	no	0	0	0	2.75	1.48	1	1	1		1	22.08	22.08	2	1.8002E-23	17008	DP1145_6	159.83	103.57		+	92886000	2004	18;108	1867	3288;3289;3290;3291	4765;4766;4767;4768;4769;4770	4767		5	9606
NLETSSAFQSSSQK	Unmodified	1512.7056	0.70561548	769	Q9Y2X9	ZNF281	Zinc finger protein 281	yes	yes	0	0	0	2.5	0.5		1	1			15.628	15.628	2	2.0231000000000001E-56	9559	DP1145_7	181.4	136.38			0	2005	769	1868	3292;3293	4771;4772	4771		2	9606
NLGSVGYDPNEK	Unmodified	1291.6044	0.60444487	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			16.162	16.162	2	0.036251	9815	DP1145_8	77.674	34.592			21338000	2006	115	1869	3294	4773	4773		0	9606
NLHLELTETCLDMMAR	2 Oxidation (M)	1977.8958	0.89581756	296	P49815	TSC2	Tuberin	yes	yes	0	2	0	5	0					1	15.115	15.115	3	0.025106	7009	DP1145_10	55.335	28.31			3591899999.9999995	2007	296	1870	3295	4774	4774	272;273	0	9606
NLILVVR	Unmodified	825.54362	0.54362294	411	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					18.255	18.255	2	1.6627E-10	11274	DP1145_6	128.82	23.547			11611000	2008	411	1871	3296	4775	4775		0	9606
NLLSVAYK	Unmodified	906.51747	0.51746776	358;386;219;350	P63104;Q04917;P31946;P31947;P62258;P27348;P61981	YWHAZ;YWHAH;YWHAB;SFN;YWHAE;YWHAQ;YWHAG	14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein theta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	no	no	0	0	0	4.5	0.5				1	1	17.735	17.735	2	0.01208	11428	DP1145_9	96.492	14.187			285950000	2009	386;358;219;350	1872	3297;3298	4776;4777	4777		1	9606
NLLTVTSSDEMMK	Oxidation (M)	1483.6898	0.68983076	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					17.837	17.837	2	0.025498	10748	DP1145_6	70.17	44.511			18859000	2010	401	1873	3299	4778	4778	357;358	1	9606
NLLVTMLIDQLCGR	Oxidation (M)	1660.864	0.86404715	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					23.403	23.403	2	1.9932E-07	18854	DP1145_6	132.17	107.32			9721800	2011	438	1874	3300	4779;4780	4779	406	2	9606
NLLVTMLIDQLCGR	Unmodified	1644.8691	0.86913253	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					24.645	24.645	2	0.004857	20684	DP1145_6	101.47	54.207			1545000	2012	438	1874	3301	4781	4781		1	9606
NLPFDFTWK	Unmodified	1166.576	0.57604528	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	3	0			1			21.724	21.724	2	0.028316	18168	DP1145_8	85.161	44.383			13808000	2013	307	1875	3302	4782	4782		1	9606
NLPLPPPPPPR	Unmodified	1193.6921	0.69207809	349	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			17.323	17.323	2	0.00029205	11625	DP1145_8	127.02	74.539			74405000	2014	349	1876	3303	4783;4784	4784		2	9606
NLQEAEEWYK	Unmodified	1308.5986	0.59863121	137	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	0	0	3	0			1			18.284	18.284	2	1.5784E-06	13109	DP1145_8	135.71	90.376			0	2015	137	1877	3304	4785	4785		1	9606
NLQNLLILTAIK	Unmodified	1352.8391	0.83913625	411	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1	0	1					22.021	22.021	2	9.0752E-12	16963	DP1145_6	145.25	112.06			12498000	2016	411	1878	3305	4786;4787	4786		2	9606
NLSSNEAISLEEIR	Unmodified	1573.7948	0.79476484	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.855	18.855	2	0.014012	12366	DP1145_6	82.505	28.908			68138000	2017	401	1879	3306	4788	4788		1	9606
NMGGPYGGGNYGPGGSGGSGGYGGR	Oxidation (M)	2204.893	0.89299211	201	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	1	0	4	0				1		16.197	16.197	2	0	8961	DP1145_9	278.88	262.4			35949000	2018	201	1880	3307	4789	4789	199	1	9606
NMQDMVEDYR	2 Oxidation (M)	1331.5122	0.51220074	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	2	0	1.5	0.5	1	1				15.153	15.153	2	0.0015814	6471	DP1145_6	104.05	98.266		+	47072000	2019	11	1881	3308;3309	4790;4791	4790	7;8	2	9606
NMQDMVEDYR	Oxidation (M)	1315.5173	0.51728612	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	1	0	1	0	1					16.737	16.737	2	0.0011096	8910	DP1145_6	103.55	90.509		+	25821000	2020	11	1881	3310	4792	4792	7;8	1	9606
NMSVHLSPCFR	Oxidation (M)	1362.6173	0.61727494	363	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	5	0					1	15.878	15.878	3	9.775E-06	8295	DP1145_10	132.25	114.88			48384000	2021	363	1882	3311	4793;4794	4793	313	2	9606
NMVPQQALVIR	Oxidation (M)	1283.702	0.70199085	112;167	P05023;P13637;P50993;Q13733	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	1	0	5	0					1	16.917	16.917	2	0.011741	10000	DP1145_10	80.438	32.835			19745000	2022	112;167	1883	3312	4795	4795	83	1	9606
NNDKSEFLSTAPR	Unmodified	1477.7161	0.71612058	449	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	1	3	0			1			15.397	15.397	2	0.0002329	8531	DP1145_8	129.89	84.521			0	2023	449	1884	3313	4796	4796		1	9606
NNFAVGYR	Unmodified	939.45626	0.45626449	275	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		16.116	16.116	2	3.5517E-10	8770	DP1145_9	148.07	58.171			231930000	2024	275	1885	3314	4797;4798;4799	4798		3	9606
NNIDSIFEVGGVPYSVLEPVLER	Unmodified	2545.3064	0.30641894	467	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	2	0		1				23.857	23.857	2	4.7913E-09	22032	DP1145_7	147.75	121.63			0	2025	467	1886	3315	4800	4800		1	9606
NNNTDLMILK	Oxidation (M)	1190.5965	0.59652272	644	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	1	0	1	0	1					18.093	18.093	2	0.0045716	11047	DP1145_6	107.9	36.203			0	2026	644	1887	3316	4801	4801	555	1	9606
NNSNDIVNAIMELTM	2 Oxidation (M)	1709.76	0.76003559	24	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	2	0	4	0				1		24.005	24.005	2	0.0036237	20627	DP1145_9	106.4	82.931			2843700	2027	24	1888	3317	4802;4803	4803	17;18	2	9606
NNVAIAVTYNHDGSYSMQIEDK	Oxidation (M)	2484.1227	0.12271727	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			2			17.268	17.268	2;3	3.5604E-22	11653	DP1145_8	152	123.22			204660000	2028	639	1889	3318;3319	4804;4805	4805	545	2	9606
NNYRNAHSATTWSGQYVGGAEAR	Unmodified	2509.1483	0.14829559	23	CON__Streptavidin			yes	yes	0	0	1	5	0					2	15.713	15.713	3;4	4.964099999999999E-22	8082	DP1145_10	148.2	115.5		+	78438000	2029	23	1890	3320;3321	4806;4807	4807		2	
NPAPPIDAVEQILPTLVR	Unmodified	1942.0888	0.088762013	308	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3.5	0.5			1	1		23.066	23.066	2	0.0024572	19217	DP1145_9	114.56	76.542			9373000	2030	308	1891	3322;3323	4808;4809	4809		2	9606
NPDDITNEEYGEFYK	Unmodified	1832.7741	0.77408897	132	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2	0		1				18.963	18.963	2	1.6893E-235	14772	DP1145_7	250.51	224.46			18191000	2031	132	1892	3324	4810	4810		0	9606
NPDTQWITKPVHK	Unmodified	1562.8205	0.82052608	344	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	1	5	0					1	15.377	15.377	3	2.2324E-08	7540	DP1145_10	153.49	113.12			146410000	2032	344	1893	3325	4811	4811		1	9606
NPVWYQALTHGLNEEQRK	Unmodified	2182.0919	0.09194991	93	O95373	IPO7	Importin-7	yes	yes	0	0	1	2	0		1				18.896	18.896	3	0.0068441	14781	DP1145_7	96.096	76.543			24275000	2033	93	1894	3326	4812	4812		0	9606
NQDEQEIPFR	Unmodified	1274.5891	0.58912916	544	Q6PK04	CCDC137	Coiled-coil domain-containing protein 137	yes	yes	0	0	0	4	0				1		17.104	17.104	2	0.00453	10361	DP1145_9	117.89	69.93			18429000	2034	544	1895	3327	4813	4813		1	9606
NQDLAPNSAEQASILSLVTK	Unmodified	2098.0906	0.090612506	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				2		21.016	21.016	2;3	0.0016909	16378	DP1145_9	120.66	84.216			92998000	2035	435	1896	3328;3329	4814;4815;4816	4815		3	9606
NQEQMKPLEEKQEEER	Unmodified	2043.9531	0.95313275	353	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	2	3	0			1			13.883	13.883	3	0.020004	6339	DP1145_8	94.487	72.333			0	2036	353	1897	3330	4817	4817		1	9606
NQIALWDQLLEGR	Unmodified	1554.8154	0.8154407	724	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	2	0		1				22.272	22.272	2	1.3167E-05	19629	DP1145_7	147.62	94.026			37925000	2037	724	1898	3331	4818;4819;4820	4818		3	9606
NQKPSQVNGAPGSPTEPAGQK	Unmodified	2091.0345	0.034494611	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	2	0		1				12.987	12.987	3	3.9845E-30	5987	DP1145_7	156.29	115.53			7591400	2038	655	1899	3332	4821;4822	4821		2	9606
NQLTSNPENTVFDAK	Unmodified	1676.8006	0.8005785	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			17.623	17.623	2	0.017458	12265	DP1145_8	77.062	52.209			221830000	2039	153	1900	3333	4823	4823		1	9606
NQTAEKEEFEHQQKELEK	Unmodified	2244.0659	0.065854319	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	2	3	0			1			14.532	14.532	4	5.877799999999999E-19	7266	DP1145_8	145.7	103.63			103100000	2040	154	1901	3334	4824	4824		0	9606
NQVALNPQNTVFDAK	Unmodified	1657.8424	0.84238373	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	3	0			1			18.023	18.023	2	5.6172E-46	12665	DP1145_8	203.51	139.14			1137100000	2041	148	1902	3335	4825	4825		1	9606
NQVALNPQNTVFDAKR	Unmodified	1813.9435	0.94349476	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	5	0					1	16.956	16.956	3	0.025742	9914	DP1145_10	79.337	48.381			13926000	2042	148	1903	3336	4826	4826		1	9606
NQVAMNPTNTVFDAK	Oxidation (M)	1664.7828	0.78281994	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			16.74	16.74	2	1.0227E-88	10600	DP1145_8	203.11	156.16			656110000	2043	154	1904	3337	4827;4828	4827	151	2	9606
NQVAMNPTNTVFDAK	Unmodified	1648.7879	0.78790532	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			17.823	17.823	2	0.0070436	12561	DP1145_8	100.93	78.211			232090000	2044	154	1904	3338	4829	4829		1	9606
NREEEWDPEYTPK	Unmodified	1691.7427	0.74272927	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	1	2	0		1				16.523	16.523	2	4.8135E-10	11116	DP1145_7	139.43	73.243			40167000	2045	767	1905	3339	4830	4830		1	9606
NSLESYAFNMK	Oxidation (M)	1318.5864	0.58635197	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			17.723	17.723	2	0.0097832	12323	DP1145_8	83.647	71.411			342690000	2046	154	1906	3340	4831;4832	4831	152	2	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	3 Oxidation (M)	3133.3315	0.33146577	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	3	0	2.5	0.5		1	1			17.625	17.625	3	2.2763E-07	12780	DP1145_7	75.887	66.217			143280000	2047	639	1907	3341;3342	4833;4834	4833	546;547;548	2	9606
NSMHVDMADEAYSIGPAPSQQSYLSMEK	Oxidation (M)	3101.3416	0.34163653	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0.816		1	1	1		18.777	18.777	3	1.1709E-12	14600	DP1145_7	116.35	98.556			121510000	2048	639	1907	3343;3344;3345	4835;4836;4837	4835	546;547;548	2	9606
NSPLTVPMFLSLFSR	Oxidation (M)	1723.8967	0.89672749	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2	0		1				23.531	23.531	2	0.00068743	21520	DP1145_7	115.92	85.862			32649000	2049	655	1908	3346	4838;4839;4840;4841	4841	565	4	9606
NSPLTVPMFLSLFSR	Unmodified	1707.9018	0.90181287	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0		1				24.263	24.263	2	1.5232999999999998E-59	22610	DP1145_7	187.78	153.01			5782300	2050	655	1908	3347	4842;4843	4843		2	9606
NSSYFVEWIPNNVK	Unmodified	1695.8257	0.82567103	395;131;460;455;664	P07437;P68371;P04350;Q13885;Q9BVA1;Q13509;Q9BUF5	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B;TUBB3;TUBB6	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain;Tubulin beta-6 chain	no	no	0	0	0	3	1.41	1	1	1	1	1	20.806	20.806	2	0	16805	DP1145_8	399.31	364.62			1163800000	2051	131;395;460;455;664	1909	3348;3349;3350;3351;3352	4844;4845;4846;4847;4848;4849;4850;4851	4848		8	9606
NSVPVTVAMVER	Oxidation (M)	1316.6758	0.67583567	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	1	0	1.5	0.5	1	1				16.427	16.427	2	0.0060927	8470	DP1145_6	87.789	48.004			82512000	2052	777	1910	3353;3354	4852;4853;4854;4855	4853	636	4	9606
NSVQTPVENSTNSQHQVK	Unmodified	1995.961	0.96099532	744	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	3	0.816		1	1	1		13.615	13.615	3	1.2096000000000001E-29	6011	DP1145_8	157.84	122.75			3331700	2053	744	1911	3355;3356;3357	4856;4857;4858;4859;4860	4858		5	9606
NSVSNFLHSLER	Unmodified	1401.7001	0.70007659	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				19.624	19.624	2;3	3.7785E-84	13499	DP1145_6	199.82	174.97			958760000	2054	438	1912	3358;3359;3360	4861;4862;4863;4864;4865	4861		5	9606
NSVTPDMMEEMYKK	2 Oxidation (M)	1733.731	0.73104365	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	2	1	4	0				1		14.716	14.716	3	0.043011	6939	DP1145_9	43.184	27.084			40078000	2055	278	1913	3361	4866	4866	262;263	0	9606
NTGIICTIGPASR	Unmodified	1358.6976	0.69763375	171	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	2	0		1				17.099	17.099	2	0.012116	12270	DP1145_7	96.229	43.44			16772000	2056	171	1914	3362	4867	4867		0	9606
NTGVILANDANAER	Unmodified	1456.727	0.72701962	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.175	16.175	2	4.4747999999999996E-304	10416	DP1145_7	280.38	222.79			124420000	2057	277	1915	3363	4868;4869	4868		2	9606
NTVLCNVVEQFLQADLAR	Unmodified	2089.0626	0.062623617	468	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	3	0			1			24.583	24.583	2	4.341E-12	22310	DP1145_8	142.45	100.97			1335100	2058	468	1916	3364	4870	4870		1	9606
NTWELKPEYR	Unmodified	1334.6619	0.66190017	170	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				1		16.823	16.823	2	0.00075276	9812	DP1145_9	136.52	94.177			42576000	2059	170	1917	3365	4871	4871		1	9606
NVEEIVVK	Unmodified	928.52295	0.52294707	689	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					16.126	16.126	2	0.0098291	7881	DP1145_6	99.375	43.871			14683000	2060	689	1918	3366	4872;4873	4873		2	9606
NVESGEEELASK	Unmodified	1290.5939	0.59393976	627	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	4	0				1		15.197	15.197	2	3.3717E-05	7422	DP1145_9	141.89	112.72			33174000	2061	627	1919	3367	4874	4874		1	9606
NVFNALIR	Unmodified	945.5396	0.53960019	420	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	4	0				1		19.223	19.223	2	0.0032567	13705	DP1145_9	119.56	78.255			18955000	2062	420	1920	3368	4875	4875		1	9606
NVGKSSHCQAPLIVHTGEK	Unmodified	2061.0426	0.042556877	417	Q02386	ZNF45	Zinc finger protein 45	yes	yes	0	0	1	5	0					2	22.953	22.953	2;3	0.010767	17694	DP1145_10	92.781	13.498			50652000	2063	417	1921	3369;3370	4876;4877	4877		1	9606
NVKEDSTADDSKDSVAQGTTNVHSSEHAGR	Unmodified	3141.4195	0.41950423	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2.5	1.12	1	1	1	1		12.856	12.856	5	1.0236E-11	5842	DP1145_7	111.49	102.19			104000000	2064	276	1922	3371;3372;3373;3374	4878;4879;4880;4881;4882	4879		5	9606
NVQDAIADAEQR	Unmodified	1328.6321	0.6320566	18	P35908;CON__P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	3	0			1			17.381	17.381	2	2.9794E-23	11781	DP1145_8	157.38	99.789		+	77433000	2065	18	1923	3375	4883;4884	4884		2	9606
NVQLQENEIR	Unmodified	1241.6364	0.6364137	251	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	2.5	1.12	1	1	1	1		15.957	15.957	2	5.9302E-12	10029	DP1145_7	153.08	108.68			3300899999.9999995	2066	251	1924	3376;3377;3378;3379	4885;4886;4887;4888;4889;4890	4886		6	9606
NVSSFPDDATSPLQENR	Unmodified	1875.8599	0.85988429	308	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			18.023	18.023	2	0.00063868	12929	DP1145_8	141.54	127.95			36775000	2067	308	1925	3380	4891	4891		1	9606
NVTHIDQALQEAHR	Unmodified	1630.8176	0.81756596	522	Q5HYK3	COQ5	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial	yes	yes	0	0	0	4	0				1		15.413	15.413	3	1.7734E-07	7662	DP1145_9	130.47	104.86			42807000	2068	522	1926	3381	4892	4892		1	9606
NVTLPAVFK	Unmodified	987.57532	0.57531699	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	3	0			1			18.924	18.924	2	0.033446	14110	DP1145_8	80.165	38.513			202730000	2069	250	1927	3382	4893	4893		1	9606
NYQQNYQNSESGEKNEGSESAPEGQAQQR	Unmodified	3256.3889	0.38893238	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	1	4	0				1		14.474	14.474	3	5.7095E-12	6692	DP1145_9	113.68	99.91			128040000	2070	390	1928	3383	4894;4895;4896	4896		3	9606
PAASSPETPSAGQQEAK	Unmodified	1654.7798	0.77984305	706	Q9NQS7	INCENP	Inner centromere protein	yes	yes	0	0	0	2.5	0.5		1	1			13.708	13.708	2	5.3564E-61	6809	DP1145_7	188.27	143.42			5360400	2071	706	1929	3384;3385	4897;4898;4899;4900;4901;4902	4898		6	9606
PAPAVGEAEDKENQQATSGPNQPSVR	Unmodified	2676.2739	0.27394961	179	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	1	3	0			1			15.078	15.078	3	7.8162E-27	8215	DP1145_8	152.88	142.51			85594000	2072	179	1930	3386	4903	4903		1	9606
PAPMMEAKGGLDPR	2 Oxidation (M)	1500.7065	0.70648388	548	Q6ZN32	ETV3L	ETS translocation variant 3-like protein	yes	yes	0	2	1	4	0				1		17.122	17.122	3	0.040715	10125	DP1145_9	45.28	21.438			11766000	2073	548	1931	3387	4904	4904	484;485	0	9606
PASTIARPNMALGK	Oxidation (M)	1441.7711	0.77113304	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	1	3.5	0.5			1	1		14.253	14.253	3	0.016396	6055	DP1145_9	82.505	82.505			121820000	2074	508	1932	3388;3389	4905;4906	4906	464	2	9606
PDFVGFEIPDK	Unmodified	1262.6183	0.61830402	105	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	5	0					1	16.33	16.33	2	0.0091211	9039	DP1145_10	93.162	39.669			56141000	2075	105	1933	3390	4907	4907		0	9606
PEFLEDPSVLTK	Unmodified	1373.7078	0.70784731	269	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	4	0				1		19.474	19.474	2	6.7455E-11	13993	DP1145_9	138.22	98.914			9094400	2076	269	1934	3391	4908	4908		1	9606
PENIIYQTR	Unmodified	1132.5877	0.58767259	605	Q8WZ42	TTN	Titin	yes	yes	0	0	0	2	0		1				22.093	22.093	2	0.0095415	19224	DP1145_7	101.64	60.614			3432400	2077	605	1935	3392	4909	4909		0	9606
PERLNAYEREVMVNMLNSLSR	2 Oxidation (M)	2552.2475	0.24754063	589	Q8NCR6	SMRP1	Spermatid-specific manchette-related protein 1	yes	yes	0	2	2	1	0	1					19.655	19.655	3	0.03187	13677	DP1145_6	42.64	14.228			15187000	2078	589	1936	3393	4910	4910	513;514	1	9606
PGAALDPGCVLAK	Unmodified	1267.6595	0.65945733	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.754	17.754	2	8.1742E-08	10383	DP1145_6	130.98	77.902			17637000	2079	438	1937	3394	4911	4911		1	9606
PGASLPPLDLQALEK	Unmodified	1547.8559	0.85590853	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.463	20.463	2	3.6461E-17	17085	DP1145_7	150.51	123.76			505540000	2080	158	1938	3395;3396;3397;3398	4912;4913;4914;4915;4916;4917	4914		6	9606
PGETEEPRPPEQQDQEGGEAAK	Unmodified	2378.0622	0.062225504	630	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	1	3	0.816		1	1	1		14.281	14.281	3	1.7377E-41	6860	DP1145_8	169.6	142.09			115930000	2081	630	1939	3399;3400;3401	4918;4919;4920;4921	4919		4	9606
PGGGPGLSTPGGHPKPPHR	Unmodified	1801.9336	0.93359877	203	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	2	0		1				12.978	12.978	4	0.023371	5985	DP1145_7	64.565	49.173			2116400	2082	203	1940	3402	4922	4922		1	9606
PGTPSAEGGSTSSTLR	Unmodified	1503.7165	0.71651452	242	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	3	0			1			14.331	14.331	2	3.6142E-248	6933	DP1145_8	260.57	242.74			47945000	2083	242	1941	3403	4923;4924	4923		2	9606
PIKPSPPYFGLLLASVGR	Unmodified	1911.0982	0.098204487	185	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	1	3	0			1			21.653	21.653	3	0.00064684	18032	DP1145_8	113.81	83.161			0	2084	185	1942	3404	4925	4925		1	9606
PIRPGQHPAASPTHPSAIR	Unmodified	1989.0657	0.06567558	235	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	1	2	0		1				13.647	13.647	4	0.0098709	6745	DP1145_7	103.67	84.845			1531200	2085	235	1943	3405	4926	4926		0	9606
PLISVYSEK	Unmodified	1034.5648	0.56481189	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	2.67	1.25	1		1	1		17.296	17.296	2	1.3385E-24	11619	DP1145_8	166.68	91.489			174600000	2086	250	1944	3406;3407;3408	4927;4928;4929;4930	4928		4	9606
PLLGLILLNEK	Unmodified	1221.7697	0.76965971	748	Q9UIA9;Q9H2T7	XPO7;RANBP17	Exportin-7;Ran-binding protein 17	yes	no	0	0	0	1	0	1					22.204	22.204	2	0.0027723	17208	DP1145_6	101.46	88.648			4601400	2087	748	1945	3409	4931	4931		1	9606
PLMETIKK	Oxidation (M)	974.54705	0.54705333	45	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	1	1	1	0	1					18.155	18.155	2	0.041462	10786	DP1145_6	65.672	6.857			12703000	2088	45	1946	3410	4932	4932	39	0	9606
PLVLPSPLVTPGSNSQER	Unmodified	1890.0211	0.021076378	638	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	2	0		2				19.734	19.734	2;3	0.0020898	16053	DP1145_7	115.57	74.847			52049000	2089	638	1947	3411;3412	4933;4934	4933		1	9606
PMKKDMQEPPAGK	2 Oxidation (M)	1487.7112	0.7112349	721	Q9NXB9	ELOVL2	Elongation of very long chain fatty acids protein 2	yes	yes	0	2	2	1.5	0.5	1	1				23.64	23.64	2	0.017752	19353	DP1145_6	66.056	9.6242			1344400	2090	721	1948	3413;3414	4935;4936	4935	605;606	2	9606
PSLDQQR	Unmodified	842.42463	0.42463001	19	CON__Q0V8M9;Q06033	ITIH3	Inter-alpha-trypsin inhibitor heavy chain H3	yes	no	0	0	0	2.5	0.5		1	1			14.985	14.985	2	1.6944E-11	7654	DP1145_8	146.21	54.022		+	0	2091	19	1949	3415;3416	4937;4938	4938		2	9606
PSSSPVIFAGGQDR	Unmodified	1416.6997	0.69974224	491	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	4	0				1		17.121	17.121	2	8.7689E-71	10405	DP1145_9	191.53	126.87			0	2092	491	1950	3417	4939	4939		1	9606
PVILLPEDTPPFLELK	Unmodified	1820.0335	0.033538545	311	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	1.5	0.5	1	1				22.893	22.893	2	0.004076	18296	DP1145_6	110.08	81.845			7114200	2093	311	1951	3418;3419	4940;4941;4942;4943;4944	4941		5	9606
PVLNFYEANFPANVMDVIAR	Oxidation (M)	2295.1358	0.13578856	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	3	0			2			22.217	22.217	2;3	5.730899999999999E-50	18857	DP1145_8	173.03	153.27			70714000	2094	186	1952	3420;3421	4945;4946;4947;4948;4949	4948	187	5	9606
PVLNFYEANFPANVMDVIAR	Unmodified	2279.1409	0.14087394	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			23.534	23.534	3	0.0012357	20957	DP1145_8	97.384	75.847			4124200	2095	186	1952	3422	4950;4951	4951		2	9606
PVSSAASVYAGAGGSGSR	Unmodified	1579.759	0.75904803	121	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	3.5	0.5			1	1		15.667	15.667	2	2.8918999999999995E-226	8070	DP1145_9	310.34	250.18			336140000	2096	121	1953	3423;3424	4952;4953	4953		2	9606
PYGLDWAELSR	Unmodified	1305.6354	0.63535107	42	O14525	ASTN1	Astrotactin-1	yes	yes	0	0	0	1	0	1					17.754	17.754	2	0.00029205	10475	DP1145_6	127.02	46.567			436000000	2097	42	1954	3425	4954;4955	4954		2	9606
QADVFPDRDHFGR	Unmodified	1558.7277	0.72768832	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	3	0.816		1	1	1		16.037	16.037	2;3	1.5601E-42	9527	DP1145_8	178.54	152.42			1051799999.9999999	2098	700	1955	3426;3427;3428	4956;4957;4958;4959	4958		2	9606
QAGVFEPTIVK	Unmodified	1187.655	0.65502388	188	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			17.723	17.723	2	0.04092	12192	DP1145_8	70.552	32.276			49889000	2099	188	1956	3429	4960	4960		1	9606
QAITQVVVSR	Unmodified	1099.635	0.63495714	696	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		16.063	16.063	2	6.4407E-47	8714	DP1145_9	182.76	123.41			152560000	2100	696	1957	3430	4961;4962	4962		2	9606
QAQAAVLAVLPR	Unmodified	1235.735	0.73500553	650	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	4	0				1		18.823	18.823	2	0.015486	12936	DP1145_9	90.601	54.949			78722000	2101	650	1958	3431	4963	4963		0	9606
QAQIEVVPSASALIIK	Unmodified	1665.9665	0.96652161	228	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	5	0					1	19.934	19.934	2	4.4806E-11	14620	DP1145_10	184.44	155.23			435630000	2102	228	1959	3432	4964	4964		1	9606
QAVDVSPLR	Unmodified	983.53999	0.53999412	282	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	16.125	16.125	2	0.0034675	8687	DP1145_10	110.12	68.618			35112000	2103	282	1960	3433	4965;4966	4966		2	9606
QAVTNPNNTFYATK	Unmodified	1567.7631	0.76307078	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			16.135	16.135	2	4.2585E-17	9743	DP1145_8	147.26	119.49			149610000	2104	254	1961	3434	4967;4968	4968		2	9606
QDAQSLHGDIPQK	Unmodified	1435.7056	0.7055559	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	0		1				14.431	14.431	3	0.0067951	7787	DP1145_7	96.334	54.509			81927000	2105	709	1962	3435	4969	4969		0	9606
QDDPFELFIAATNIR	Unmodified	1748.8733	0.87334951	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				24.068	24.068	2	0.0019328	22376	DP1145_7	111.79	45.233			3580300	2106	681	1963	3436	4970	4970		1	9606
QDQIQQVVNHGLVPFLVSVLSK	Unmodified	2447.3536	0.35364391	308	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			24.022	24.022	3	0.0008073	21483	DP1145_8	94.911	83.016			4594500	2107	308	1964	3437	4971	4971		1	9606
QEGIIFIGPPPSAIR	Unmodified	1593.8879	0.88787736	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	20.33	20.33	2	1.3245E-89	15406	DP1145_9	206.36	180.98			1073299999.9999999	2108	639	1965	3438;3439;3440;3441	4972;4973;4974;4975;4976;4977;4978;4979	4979		8	9606
QEYDESGPSIVHR	Unmodified	1515.6954	0.69538514	337;389	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P0CG39;P63261	ACTB;POTEE;POTEF;POTEI;POTEKP;POTEJ;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	4.5	0.5				1	1	15.324	15.324	3	0.0015277	7381	DP1145_10	99.531	71.564			188910000	2109	337;389	1966	3442;3443	4980;4981	4980		2	9606
QFSQYIK	Unmodified	912.47052	0.47051757	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		16.449	16.449	2	0.00021631	9342	DP1145_9	128.48	19.502			146640000	2110	278	1967	3444	4982	4982		1	9606
QFSSADEAALKEPIIK	Unmodified	1745.92	0.91996535	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	2.75	1.09	1		2	1		17.456	17.456	2;3	6.3495E-106	11918	DP1145_8	212.68	159.67			1888399999.9999998	2111	700	1968	3445;3446;3447;3448	4983;4984;4985;4986;4987	4985		5	9606
QGDEVSVHYDPMIAK	Oxidation (M)	1703.7825	0.78248559	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.57	0.904	1	2	3	1		16.276	16.276	2;3	3.6105E-59	9975	DP1145_8	183.06	154.36			596090000	2112	639	1969	3449;3450;3451;3452;3453;3454;3455	4988;4989;4990;4991;4992;4993;4994;4995;4996;4997	4993	549	10	9606
QGDEVSVHYDPMIAK	Unmodified	1687.7876	0.78757097	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2	0		1				16.999	16.999	3	0.0032974	11893	DP1145_7	90.689	66.847			96354000	2113	639	1969	3456	4998	4998		1	9606
QGEELEVVQK	Unmodified	1157.5928	0.59281755	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	5	0					1	15.638	15.638	2	0.01742	8043	DP1145_10	86.882	31.77			11242000	2114	679	1970	3457	4999	4999		1	9606
QGPLHGMLINTPYVTK	Oxidation (M)	1783.9291	0.92909025	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	2					17.153	17.153	2;3	3.6615E-25	9664	DP1145_6	156.52	118.5			444560000	2115	438	1971	3458;3459	5000;5001;5002;5003	5002	407	4	9606
QGPLHGMLINTPYVTK	Unmodified	1767.9342	0.93417563	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					18.355	18.355	2;3	0.00054403	11624	DP1145_6	116.87	64.865			171960000	2116	438	1971	3460;3461	5004;5005;5006	5005		3	9606
QGQYSPMAIEEQVAVIYAGVR	Oxidation (M)	2324.1471	0.14708153	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	3	0			1			22.368	22.368	3	0.015711	19140	DP1145_8	60.325	32.147			12245000	2117	215	1972	3462	5007	5007	210	1	9606
QGQYSPMAIEEQVAVIYAGVR	Unmodified	2308.1522	0.15216691	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			22.837	22.837	3	0.021235	19783	DP1145_8	59.163	30.006			3057200	2118	215	1972	3463	5008	5008		1	9606
QGSEHTYESCGDGVPAPQK	Unmodified	2045.8749	0.87488243	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	1	0	1					14.544	14.544	3	0.0024175	5625	DP1145_6	83.894	75.404			11076000	2119	735	1973	3464	5009	5009		1	9606
QGTIFLAGPPLVK	Unmodified	1339.7864	0.7863724	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		19.801	19.801	2	1.0059E-16	15435	DP1145_8	148.32	129.54			870910000	2120	700	1974	3465;3466;3467	5010;5011;5012;5013;5014;5015	5012		6	9606
QGVDADINGLR	Unmodified	1156.5836	0.58364985	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	0	1					16.948	16.948	2	6.399E-95	9243	DP1145_6	213.85	99.067		+	73228000	2121	17	1975	3468	5016;5017;5018	5018		3	9606
QIFLGGVDKR	Unmodified	1131.64	0.64004252	114	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	1	4	0				1		16.072	16.072	2	1.3651E-10	8735	DP1145_9	146.79	77.999			96255000	2122	114	1976	3469	5019;5020	5020		2	9606
QIIISEIISSLPSIVNDK	Unmodified	1968.1143	0.11430806	495	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	3	0			1			24.037	24.037	2	1.1882E-26	21525	DP1145_8	185.95	159.82			2628700	2123	495	1977	3470	5021;5022	5022		2	9606
QILDPAASVTGSR	Unmodified	1313.6939	0.69392858	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					17.454	17.454	2	0.025907	10011	DP1145_6	84.31	50.389			33718000	2124	276	1978	3471	5023	5023		0	9606
QILDSAASLTGSK	Unmodified	1289.6827	0.68269519	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	0	1					17.654	17.654	2	1.0573E-06	10192	DP1145_6	126.71	69.899			13486000	2125	276	1979	3472	5024	5024		0	9606
QILLGPNTGLSGGMPGALPSLPGKI	Oxidation (M)	2403.3196	0.31956659	715	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	1	5	0					1	21.215	21.215	2	7.9108E-10	16303	DP1145_10	122.46	91.98			10371000	2126	715	1980	3473	5025	5025	597	1	9606
QINWTVLYR	Unmodified	1191.64	0.64004252	407	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	20.134	20.134	2	0.017384	14928	DP1145_10	90.37	63.986			187460000	2127	407	1981	3474	5026	5026		1	9606
QIQHHSTGHCNPSMKAR	Oxidation (M)	2003.9166	0.91664486	726	Q9NYV7	TAS2R16	Taste receptor type 2 member 16	yes	yes	0	1	1	5	0					1	15.756	15.756	2	0.035776	8131	DP1145_10	88.155	52.381			47187000	2128	726	1982	3475	5027	5027	608	1	9606
QISNLQQSISDAEQR	Unmodified	1715.8438	0.84384029	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					18.054	18.054	2	0.016384	11158	DP1145_6	77.597	28.246		+	118070000	2129	11	1983	3476	5028	5028		1	9606
QITVNDLPVGR	Unmodified	1210.667	0.66698555	233	P32119;Q06830	PRDX2;PRDX1	Peroxiredoxin-2;Peroxiredoxin-1	yes	no	0	0	0	5	0					1	17.848	17.848	2	1.2369E-27	11335	DP1145_10	164.68	116.26			58860000	2130	233	1984	3477	5029	5029		1	9606
QKVEGTEPTTAFNLFVGNLNFNK	Unmodified	2567.302	0.30200227	194	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.5	0.5		1	1			21.427	21.427	3	2.0512E-22	18567	DP1145_7	119.37	104.32			154130000	2131	194	1985	3478;3479	5030;5031	5030		2	9606
QLAAATAPIPGATLLDDLITPAK	Unmodified	2260.2678	0.26784859	658	Q9BRR8	GPATCH1	G patch domain-containing protein 1	yes	yes	0	0	0	2	0		2				23.305	23.305	2	7.4165E-16	21196	DP1145_7	144.73	117.05			3430000	2132	658	1986	3480;3481	5032;5033	5032		2	9606
QLASGLLLVTGPLVLNR	Unmodified	1763.0669	0.066904359	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	3	1.41	1			2		22.426	22.426	2;3	0	18272	DP1145_9	327.06	281.4			102730000	2133	419	1987	3482;3483;3484	5034;5035;5036;5037;5038;5039;5040	5039		7	9606
QLFHPEQLITGK	Unmodified	1409.7667	0.76669959	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	0	3.33	0.471			2	1		18.323	18.323	2;3	1.035E-118	13324	DP1145_8	220.82	0			1274100000	2134	393;550;394	1988	3485;3486;3487	5041;5042;5043;5044;5045;5046;5047;5048	5043		8	9606
QLFHPEQLITGKEDAANNYAR	Unmodified	2414.1979	0.19787154	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;P68366	TUBA1B;TUBA1A;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	0	1	2.75	1.09	1		2	1		18.129	18.129	3;4	7.7783E-159	12822	DP1145_8	231.62	198.25			1348800000	2135	393;550;394	1989	3488;3489;3490;3491	5049;5050;5051;5052;5053;5054;5055	5053		6	9606
QLFSSLFSGILK	Unmodified	1338.7547	0.75473792	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					22.909	22.909	2	7.9897E-06	18251	DP1145_6	128.03	65.453			5883000	2136	401	1990	3492	5056;5057	5057		2	9606
QLKDNTCVVEFQFMLPTSHPNR	Oxidation (M)	2676.2788	0.27884076	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					18.943	18.943	4	0.031929	12337	DP1145_6	42.908	29.72			32400000	2137	438	1991	3493	5058	5058	383	1	9606
QLLAGGIAGAVSR	Unmodified	1211.6986	0.69862003	541	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	3	0			1			18.023	18.023	2	0.01274	12756	DP1145_8	84.507	28.076			14892000	2138	541	1992	3494	5059	5059		1	9606
QLLQANPILEAFGNAK	Unmodified	1725.9414	0.94136949	243;558	P35579;P35749;Q7Z406	MYH9;MYH11;MYH14	Myosin-9;Myosin-11;Myosin-14	no	no	0	0	0	1	0	1					21.794	21.794	2	3.6088E-74	16623	DP1145_6	191.33	141.86			12992000	2139	243;558	1993	3495	5060;5061	5060		2	9606
QLSQSLLPAIVELAEDAK	Unmodified	1924.0517	0.051707805	229	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	no	0	0	0	3	0			2			23.59	23.59	2;3	0.035487	20917	DP1145_8	93.228	52.713			14498000	2140	229	1994	3496;3497	5062;5063	5063		2	9606
QLSSGVSEIR	Unmodified	1074.5669	0.56693715	111	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	5	0					1	15.503	15.503	2	3.516E-07	7725	DP1145_10	141.52	74.527			61664000	2141	111	1995	3498	5064	5064		1	9606
QLTEEDGVHSVIEENIK	Unmodified	1938.9535	0.95345032	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					17.954	17.954	2;3	1.2305E-107	10942	DP1145_6	207.34	170.81			1040099999.9999999	2142	438	1996	3499;3500	5065;5066	5065		1	9606
QLTQTTHTDKVPGDEDKGINVFR	Unmodified	2598.3038	0.30379318	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		2				16.114	16.114	3;4	5.8418E-10	10382	DP1145_7	133.92	112.9			168280000	2143	276	1997	3501;3502	5067;5068;5069	5067		2	9606
QMEQISQFLQAAER	Oxidation (M)	1693.8094	0.80936904	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	19.827	19.827	2	1.5958E-34	14375	DP1145_10	167.2	91.546			13566000	2144	253	1998	3503	5070	5070	234	1	9606
QMFLTQTDTGDDR	Oxidation (M)	1542.662	0.6620361	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					16.4	16.4	2	0.001098	8436	DP1145_6	108.43	74.471			18558000	2145	401	1999	3504	5071	5071	359	1	9606
QMLDPANYGTGMER	2 Oxidation (M)	1613.6814	0.68139134	276	P46013	MKI67	Antigen KI-67	yes	yes	0	2	0	1.5	0.5	1	1				16.141	16.141	2	0.0043703	10397	DP1145_7	93.623	62.438			31210000	2146	276	2000	3505;3506	5072;5073	5073	252;253	2	9606
QMLPLNTNIR	Oxidation (M)	1214.6441	0.64414162	44	O14980	XPO1	Exportin-1	yes	yes	0	1	0	2	0		1				16.899	16.899	2	0.035557	11709	DP1145_7	67.897	23.144			29038000	2147	44	2001	3507	5074	5074	37	1	9606
QNLEPLFEQYINNLR	Unmodified	1889.9636	0.9635615	108	P04259;CON__P48668;CON__P04259;CON__P02538;P48668;P02538;CON__P13647;P13647	KRT6B;KRT6C;KRT6A;KRT5	Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5	yes	no	0	0	0	2	0		1				22.749	22.749	2	4.7265E-37	20436	DP1145_7	165.66	95.685		+	3322700	2148	108	2002	3508	5075	5075		0	9606
QNQTTSAVSTPASSETSK	Unmodified	1822.8545	0.85446456	295	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	1	0	1					14.045	14.045	2	0.00018104	4957	DP1145_6	123.95	55.878			3663300	2149	295	2003	3509	5076	5076		1	9606
QPGSSSSSAPGQPSTGVAR	Unmodified	1756.834	0.83400389	536	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	2	0		1				14.03	14.03	2	0.0072093	7379	DP1145_7	109.22	85.845			17480000	2150	536	2004	3510	5077	5077		1	9606
QPLALNVAYR	Unmodified	1143.64	0.64004252	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		17.923	17.923	2	7.261199999999999E-43	11580	DP1145_9	169.06	137.3			80143000	2151	435	2005	3511	5078	5078		0	9606
QQGDHSLKEHELLEQQKR	Unmodified	2202.1141	0.11414192	452	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	2	2	0		1				13.93	13.93	5	0.016819	7006	DP1145_7	66.826	66.826			7529400	2152	452	2006	3512	5079	5079		0	9606
QQLPEQPFEK	Unmodified	1242.6245	0.62445203	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	2	0		1				16.672	16.672	2	5.3955E-12	11226	DP1145_7	153.24	89.037			115140000	2153	277	2007	3513	5080	5080		1	9606
QQLPQTPPSCLK	Unmodified	1395.718	0.71803484	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				16.122	16.122	2	0.0019141	10385	DP1145_7	112.3	92.688			66417000	2154	575	2008	3514	5081;5082	5081		2	9606
QQQEELEAEHGTGDKPAAPR	Unmodified	2190.0301	0.030137515	461	Q13895	BYSL	Bystin	yes	yes	0	0	1	3	0			1			13.934	13.934	4	0.032184	6539	DP1145_8	52.731	26.137			120630000	2155	461	2009	3515	5083	5083		1	9606
QQQQNVEDAMKEMQKPLAR	2 Oxidation (M)	2303.0998	0.099813759	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	2	2	3	0.816		2	2	2		13.903	13.903	3;4	0.00092487	5372	DP1145_9	85.988	62.118			128020000	2156	656	2010	3516;3517;3518;3519;3520;3521	5084;5085;5086;5087;5088;5089;5090;5091;5092	5090	566;567	9	9606
QQSEEDLLLQDFSR	Unmodified	1706.8111	0.81114318	761	Q9UNL2	SSR3	Translocon-associated protein subunit gamma	yes	yes	0	0	0	1	0	1					20.807	20.807	2	7.4301E-15	15174	DP1145_6	147.91	120.43			0	2157	761	2011	3522	5093	5093		1	9606
QQTQHAVEGDCDIHVLK	Unmodified	1976.9374	0.9374231	14	CON__P12763			yes	yes	0	0	0	3	0			1			15.078	15.078	3	0.0058831	8010	DP1145_8	79.471	65.217		+	20599000	2158	14	2012	3523	5094	5094		1	
QRQEEPPPGPQRPDQSAAAAGPGDPK	Unmodified	2680.2954	0.29535376	653	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	2	5	0					1	14.326	14.326	4	0.031895	5808	DP1145_10	49.638	49.638			21895000	2159	653	2013	3524	5095	5095		1	9606
QSFEVLK	Unmodified	849.45962	0.45961853	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.33	1.25	1	1		1		16.649	16.649	2	3.0709E-05	11237	DP1145_7	91.626	17.652			4723800000	2160	474	2014	3525;3526;3527	5096;5097;5098	5097		0	9606
QSFEVLKR	Unmodified	1005.5607	0.56072956	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				15.297	15.297	2	0.032781	9049	DP1145_7	104.21	58.257			166840000	2161	474	2015	3528	5099	5099		1	9606
QSLEASLAETEGR	Unmodified	1389.6736	0.67358707	15	CON__P13645;P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	2	0.816	1	1	1			17.782	17.782	2	1.0541E-37	12962	DP1145_7	163.84	125.75		+	72571000	2162	15	2016	3529;3530;3531	5100;5101;5102	5101		2	9606
QSLGELIGTLNAAK	Unmodified	1413.7827	0.78274359	334	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	20.691	20.691	2	5.4615E-19	15579	DP1145_10	147.28	67.295			6094800	2163	334	2017	3532	5103	5103		0	9606
QSNVAAPGDATPPAEKK	Unmodified	1679.8479	0.84786304	638	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	1	2	0		1				12.987	12.987	3	0.017105	6097	DP1145_7	94.61	79.319			1551000	2164	638	2018	3533	5104	5104		1	9606
QSPEALLK	Unmodified	884.49673	0.49673232	565	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	4	0				1		18.223	18.223	1	0.011055	12262	DP1145_9	104.37	19.45			171340000	2165	565	2019	3534	5105	5105		0	9606
QSVEADINGLR	Unmodified	1200.6099	0.6098646	15	CON__P13645;P13645;CON__P02535-1;CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__P13646-1;P13646;CON__Q2M2I5;Q2M2I5	KRT10;KRT13;KRT24	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 24	yes	no	0	0	0	3	0			1			17.523	17.523	2	8.5206E-13	11890	DP1145_8	149.72	103.75		+	35579000	2166	15	2020	3535	5106	5106		1	9606
QSVEADINGLRR	Unmodified	1356.711	0.71097563	15	CON__P13645;P13645;CON__P02535-1;CON__ENSEMBL:ENSP00000377550;CON__P08730-1;CON__P13646-1;P13646	KRT10;KRT13	Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13	yes	no	0	0	1	2	1	1		1			16.454	16.454	2;3	0.020479	10144	DP1145_8	97.597	37.199		+	75174000	2167	15	2021	3536;3537	5107;5108	5108		1	9606
QSVENDIHGLR	Unmodified	1266.6317	0.63166267	121	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	3.5	0.5			1	1		15.445	15.445	3	0.0087952	7785	DP1145_9	78.513	51.806			39126000	2168	121	2022	3538;3539	5109;5110	5110		2	9606
QTALVELLK	Unmodified	1013.6121	0.61209643	10	CON__P02769			yes	yes	0	0	0	2	0		1				19.196	19.196	2	0.0097285	15212	DP1145_7	101.25	42.471		+	30322000	2169	10	2023	3540	5111	5111		0	
QTIQYIHPADAVK	Unmodified	1482.7831	0.78307794	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		2				16.025	16.025	3	0.019354	10197	DP1145_7	77.279	44.655			0	2170	681	2024	3541;3542	5112;5113	5112		2	9606
QTMLFSATQTR	Oxidation (M)	1298.6289	0.62888548	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	1	0	3	0			1			16.34	16.34	2	0.0015183	10123	DP1145_8	101.97	49.807			50270000	2171	719	2025	3543	5114	5114	603	1	9606
QTQIFTTYSDNQPGVLIQVYEGER	Unmodified	2785.3559	0.35588833	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			2			21.387	21.387	2;3	7.3257E-14	17745	DP1145_8	196.45	167.81			42078000	2172	148	2026	3544;3545	5115;5116	5115		1	9606
QTVAVGVIK	Unmodified	913.55967	0.55966693	391	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	4	1			1		1	15.735	15.735	2	0.0037958	8002	DP1145_10	107.29	5.5733			524660000	2173	391	2027	3546;3547	5117;5118	5117		1	9606
QTYFLPVIGLVDAEK	Unmodified	1691.9134	0.91342341	187	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	3	0			1			22.788	22.788	2	0.0071311	19710	DP1145_8	100.04	66.147			7767600	2174	187	2028	3548	5119	5119		1	9606
QVAEQFLNMR	Oxidation (M)	1250.6078	0.60775611	202	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	1	0	4	0				1		17.122	17.122	2	0.0037716	10388	DP1145_9	109.48	75.557			31420000	2175	202	2029	3549	5120	5120	201	1	9606
QVGYENAGTVEFLVDR	Unmodified	1795.8741	0.87407779	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1.67	0.471	1	2				20.801	20.801	2	1.0975E-220	16346	DP1145_7	256.31	201.54			471430000	2176	158	2030	3550;3551;3552	5121;5122;5123;5124;5125	5122		4	9606
QVLDNLTMEK	Oxidation (M)	1205.5962	0.59618837	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	1	0	3	0			1			16.64	16.64	2	0.0049269	10606	DP1145_8	93.178	55.629		+	100830000	2177	17	2031	3553	5126	5126	14	1	9606
QVLIASHLPSYELR	Unmodified	1624.8937	0.89369102	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.327	18.327	2;3	3.7134999999999996E-113	13876	DP1145_7	208.17	116.54			183370000	2178	438	2032	3554;3555;3556	5127;5128;5129;5130	5130		3	9606
QVPNESFFNFFNPLK	Unmodified	1826.8992	0.89917033	648	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	3	0			1			23.268	23.268	2	1.9007E-17	20465	DP1145_8	152.64	115.97			14157000	2179	648	2033	3557	5131;5132	5132		2	9606
QVQAEVPGSPIFVMR	Oxidation (M)	1672.8607	0.86067633	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					18.655	18.655	2	0.0047405	12091	DP1145_6	92.943	75.507			201380000	2180	438	2034	3558	5133;5134	5133	408	2	9606
QVQAEVPGSPIFVMR	Unmodified	1656.8658	0.86576171	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.337	22.337	2	0.044504	17394	DP1145_6	66.663	25.948			18384000	2181	438	2034	3559	5135	5135		0	9606
QVQPQVQPQAHSQPPR	Unmodified	1823.9391	0.93907808	756	Q9ULV3	CIZ1	Cip1-interacting zinc finger protein	yes	yes	0	0	0	2	0		1				13.93	13.93	3	0.0052633	6927	DP1145_7	68.978	36.276			4084300	2182	756	2035	3560	5136	5136		1	9606
QWYESHYALPLGR	Unmodified	1618.7892	0.78922595	355	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	5	0					1	18.757	18.757	2	3.0052999999999997E-52	12754	DP1145_10	180.66	129.22			0	2183	355	2036	3561	5137	5137		1	9606
RAKSSTATHPPGPAVQLNK	Unmodified	1959.065	0.065006878	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2	0		1				13.114	13.114	4	0.010186	6006	DP1145_7	103.77	84.052			920320	2184	474	2037	3562	5138	5138		1	9606
RAPFDLFENK	Unmodified	1235.6299	0.62987176	136	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	2	0		1				18.602	18.602	2	0.032652	14425	DP1145_7	114.86	13.606			55148000	2185	136	2038	3563	5139;5140	5140		2	9606
RATLGPTPTTPPQPPDPSQPPPGPMQH	Oxidation (M)	2814.3759	0.37591226	70	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	1	5	0					1	16.902	16.902	3	0.0059536	9859	DP1145_10	57.051	22.902			0	2186	70	2039	3564	5141	5141	57	1	9606
RAVMLLHTHTITSR	Oxidation (M)	1650.8988	0.89879317	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	1	1	0	1					14.645	14.645	4	0.0038608	5585	DP1145_6	88.282	61.792			1330700	2187	608	2040	3565	5142	5142	524	0	9606
RAYIAYELNSVQHR	Unmodified	1718.8853	0.8852516	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					16.4	16.4	3	2.3996000000000003E-45	8362	DP1145_6	168	133.9			470450000	2188	438	2041	3566	5143;5144;5145	5143		3	9606
RDPALNSGVSQKPDPAK	Unmodified	1778.9275	0.92751034	157	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	2	3	0.816		1	1	1		12.991	12.991	3	0.00025938	5971	DP1145_7	126.84	108.74			9235900	2189	157	2042	3567;3568;3569	5146;5147;5148;5149	5146		4	9606
RFDDAVVQSDMK	Oxidation (M)	1425.6558	0.65582851	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	1	3	0			2			14.978	14.978	2;3	0.00044355	8038	DP1145_8	117.14	91.328			311100000	2190	154	2043	3570;3571	5150;5151;5152;5153	5152	153	4	9606
RFDDAVVQSDMK	Unmodified	1409.6609	0.66091389	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	3	0			2			16.106	16.106	2;3	1.0603E-83	9632	DP1145_8	203.03	150.86			262620000	2191	154	2043	3572;3573	5154;5155;5156;5157	5154		4	9606
RFELYFQGPSSNKPR	Unmodified	1824.9271	0.92711641	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	2	2	0		1				17.099	17.099	3	4.1332E-11	11887	DP1145_7	138.19	114.3			44327000	2192	236	2044	3574	5158;5159	5158		2	9606
RFPELESLVPNALDYIR	Unmodified	2031.0789	0.078925608	604	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	1	3	0			1			22.217	22.217	3	0.00058957	18819	DP1145_8	105.39	88.896			9238300	2193	604	2045	3575	5160	5160		1	9606
RFQAQSLGTTYIYDIPEMFR	Unmodified	2435.1944	0.19436607	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					21.813	21.813	3	0.045596	16649	DP1145_6	63.447	40.822			3293300	2194	438	2046	3576	5161	5161		0	9606
RGPCIIYNEDNGIIK	Unmodified	1760.888	0.88795372	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			2			17.377	17.377	2;3	3.5252E-16	11755	DP1145_8	159.99	95.35			52796000	2195	250	2047	3577;3578	5162;5163	5163		2	9606
RGRPSQEPPLAPPHR	Unmodified	1693.9125	0.9124694	531	Q5VWQ0	RSBN1	Round spermatid basic protein 1	yes	yes	0	0	2	2	0		1				13.605	13.605	4	0.020489	6683	DP1145_7	79.466	53.318			2030800	2196	531	2048	3579	5164	5164		1	9606
RHPEYAVSVLLR	Unmodified	1438.8045	0.80448208	10	CON__P02769			yes	yes	0	0	1	2.67	1.25	1		1	1		17.235	17.235	3	0.0029685	9654	DP1145_6	100.02	65.124		+	423050000	2197	10	2049	3580;3581;3582	5165;5166;5167	5165		2	
RHPYFYAPELLYYANK	Unmodified	2044.0207	0.020682448	10	CON__P02769			yes	yes	0	0	1	3	0			1			19.624	19.624	3	0.0094741	15072	DP1145_8	110.22	82.005		+	97584000	2198	10	2050	3583	5168	5168		0	
RIALTDNALIAR	Unmodified	1325.7779	0.77793298	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	4	0				1		17.223	17.223	3	4.1379E-14	10598	DP1145_9	136.81	83.595			43251000	2199	191	2051	3584	5169	5169		0	9606
RIEPAEELNSNDMK	Oxidation (M)	1660.7726	0.77264919	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2	0		1				14.725	14.725	2	0.0037085	8299	DP1145_7	91.961	51.465			20232000	2200	276	2052	3585	5170	5170	254	1	9606
RIGYPVMIK	Oxidation (M)	1091.6161	0.61613595	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	3	0.816		1	1	1		15.724	15.724	2	0.0035	9793	DP1145_7	96.19	58.03			604220000	2201	639	2053	3586;3587;3588	5171;5172;5173;5174	5171	541	4	9606
RIGYPVMIK	Unmodified	1075.6212	0.62122133	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	3	0			1			16.54	16.54	2	0.014363	10251	DP1145_8	98.523	52.571			145080000	2202	639	2053	3589	5175	5175		0	9606
RILELSGSSSEDSEK	Unmodified	1635.7952	0.79515877	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	0	1					15.428	15.428	3	0.018458	6856	DP1145_6	71.354	47.886			17147000	2203	401	2054	3590	5176	5176		0	9606
RILNVPQELYEK	Unmodified	1500.83	0.83002813	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					17.754	17.754	3	0.018096	10687	DP1145_6	87.641	40.686			43740000	2204	438	2055	3591	5177	5177		1	9606
RIPVQAVWAGWGHASENPK	Unmodified	2102.081	0.080991294	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	1	1	0	2					18.255	18.255	3;4	2.2235E-18	11329	DP1145_6	180.88	142.22			802560000	2205	41;438	2056	3592;3593	5178;5179;5180;5181	5179		4	9606
RISEQFTAMFR	Oxidation (M)	1400.6871	0.68706906	395;131;460;455	P07437;P68371;P04350;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	1	1	3	0			2			17.025	17.025	2;3	0.00026742	11205	DP1145_8	110.08	82.395			109870000	2206	131;395;460;455	2057	3594;3595	5182;5183	5183	122	1	9606
RKTMQPHLLTK	Oxidation (M)	1367.7707	0.77073911	611	Q92817	EVPL	Envoplakin	yes	yes	0	1	2	4	0				1		16.823	16.823	2	0.034982	9863	DP1145_9	96.143	36.99			60093000	2207	611	2058	3596	5184	5184	526	1	9606
RLLLEDLVK	Unmodified	1097.6808	0.6808447	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.055	19.055	2	0.0018375	12708	DP1145_6	135.83	55.392			147590000	2208	438	2059	3597	5185	5185		1	9606
RLTFLVAQK	Unmodified	1074.655	0.6549643	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				16.712	16.712	2	3.8626E-05	11256	DP1145_7	118.5	48.497			441640000	2209	438	2060	3598;3599	5186;5187	5187		0	9606
RMATEVAADALGEEWK	Oxidation (M)	1791.8461	0.84614848	370	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	1	1	4	0				1		18.05	18.05	3	0.02319	11874	DP1145_9	70.167	28.2			0	2210	370	2061	3600	5188	5188	314	1	9606
RNEQLTLHDERFEK	Unmodified	1813.9071	0.90710925	624	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	2	3	0			1			14.731	14.731	4	0.012857	7562	DP1145_8	77.644	54.048			9883700	2211	624	2062	3601	5189	5189		0	9606
RNLDIERPTYTNLNR	Unmodified	1873.9759	0.97585752	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	2	3.33	0.471			2	1		16.096	16.096	3;4	9.2284E-11	9604	DP1145_8	142.39	105.86			490750000	2212	393;550;394	2063	3602;3603;3604	5190;5191;5192;5193	5191		4	9606
RNPDTQWITKPVHK	Unmodified	1718.9216	0.92163711	344	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	2	3.2	1.83	2			1	2	14.702	14.702	3;4	1.9874E-11	6345	DP1145_10	167.22	134.75			105820000	2213	344	2064	3605;3606;3607;3608;3609	5194;5195;5196;5197;5198;5199;5200	5197		6	9606
RNPETSVTQSSSAQDEPATK	Unmodified	2131.9982	0.99816868	702	Q9HCG8	CWC22	Pre-mRNA-splicing factor CWC22 homolog	yes	yes	0	0	1	2	0		1				13.772	13.772	3	1.9708E-27	6891	DP1145_7	158.02	119.56			2214500	2214	702	2065	3610	5201;5202	5202		2	9606
RPAEDMEEEQAFKR	Oxidation (M)	1750.7944	0.79444726	349	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	2	3.5	0.5			1	1		14.031	14.031	3	3.1858E-17	6577	DP1145_8	148.85	119.36			49437000	2215	349	2066	3611;3612	5203;5204;5205	5203	310	3	9606
RPAEDMEEEQAFKR	Unmodified	1734.7995	0.79953264	349	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	2	3	0			1			14.781	14.781	3	5.4258E-07	7655	DP1145_8	125.73	86.711			134600000	2216	349	2066	3613	5206	5206		1	9606
RPCFSALTPDETYVPK	Unmodified	1879.9138	0.91383411	10	CON__P02769			yes	yes	0	0	1	5	0					1	17.973	17.973	3	0.041915	11605	DP1145_10	60.631	30.323		+	12619000	2217	10	2067	3614	5207	5207		0	
RPELLTHSTTEVTQPR	Unmodified	1863.9803	0.9802742	399	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	1	2	0		2				15.197	15.197	3;4	3.0725E-11	8877	DP1145_7	143.93	115.99			48688000	2218	399	2068	3615;3616	5208;5209;5210	5209		2	9606
RPENSLLEETLHFDHAVR	Unmodified	2162.0869	0.086864532	37	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	1	2	0		1				18.303	18.303	4	0.00099677	13952	DP1145_7	86.016	47.439			185170000	2219	37	2069	3617	5211	5211		1	9606
RPGAALDPGCVLAK	Unmodified	1423.7606	0.76056836	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.454	16.454	2;3	1.8167000000000002E-45	8399	DP1145_6	158.08	121.7			1287500000	2220	438	2070	3618;3619	5212;5213	5213		2	9606
RPGEEGTVMSLAGK	Oxidation (M)	1446.7137	0.71367774	103	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	1	1	4	0				1		14.704	14.704	3	0.00017315	6679	DP1145_9	126.71	56.165			45086000	2221	103	2071	3620	5214;5215	5215	77	2	9606
RPGEEGTVMSLAGK	Unmodified	1430.7188	0.71876312	103	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	4	0				1		16.132	16.132	3	0.0047477	8823	DP1145_9	74.133	48.432			0	2222	103	2071	3621	5216	5216		1	9606
RPILTIITLEDSSGNLLGR	Unmodified	2067.1688	0.16880325	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	1	3	0			1			21.125	21.125	3	0.012666	17434	DP1145_8	94.856	79.131			147290000	2223	110	2072	3622	5217	5217		1	9606
RPISADSAIMNPASK	Oxidation (M)	1572.793	0.7929907	411	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	1	1	1	0	1					14.897	14.897	3	0.003344	6043	DP1145_6	93.738	54.939			0	2224	411	2073	3623	5218	5218	368	1	9606
RPKEEEWDPEYTPK	Unmodified	1802.8475	0.84752869	725	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	2	1.5	0.5	1	1				15.636	15.636	3	6.8819E-08	7204	DP1145_6	127.79	71.653			49825000	2225	725	2074	3624;3625	5219;5220	5219		0	9606
RPLPATSWEDMKK	Oxidation (M)	1573.7923	0.79226242	579	Q8N567	ZCCHC9	Zinc finger CCHC domain-containing protein 9	yes	yes	0	1	2	4	0				1		14.695	14.695	3	0.013175	6557	DP1145_9	83.53	55.248			6692800	2226	579	2075	3626	5221	5221	509	1	9606
RPQYSNPPVQGEVMEGADNQGAGEQGRPVR	Oxidation (M)	3238.5174	0.51738456	390	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	2	4	0				2		15.318	15.318	3;4	7.4679E-35	7427	DP1145_9	154.92	131.43			329720000	2227	390	2076	3627;3628	5222;5223;5224;5225	5222	328	4	9606
RPTDYFAEMAK	Oxidation (M)	1343.618	0.61798644	650	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	1	1	4	0				1		15.577	15.577	2	0.022095	8109	DP1145_9	70.552	47.123			69651000	2228	650	2077	3629	5226	5226	559	1	9606
RPVFPPLCGDGLLSGKEETR	Unmodified	2227.1419	0.14193657	713	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	2	4	0				1		18.383	18.383	3	0.001484	12417	DP1145_9	113.23	80.487			12876000	2229	713	2078	3630	5227	5227		1	9606
RPVSAMFIFSEEK	Oxidation (M)	1555.7705	0.77046434	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	1	1	2	0		1				17.662	17.662	3	0.0080239	12800	DP1145_7	94.781	63.125			27281000	2230	184	2079	3631	5228	5228	184	0	9606
RQEDGTQPQVNGQQVGCVTDGHHASSR	Unmodified	2947.3339	0.33394088	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	1	3	1		1		1		14.197	14.197	4;5	8.894E-07	6100	DP1145_9	65.056	49.16			13115000	2231	735	2080	3632;3633	5229;5230;5231	5231		2	9606
RQGSEHTYESCGDGVPAPQK	Unmodified	2201.976	0.97599345	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	1	1	0	1					14.045	14.045	4	0.019811	4912	DP1145_6	57.338	32.313			1384500	2232	735	2081	3634	5232	5232		0	9606
RQPEAVHLLDK	Unmodified	1304.7201	0.72008375	609	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	1	1	0	1					14.918	14.918	3	0.036793	6123	DP1145_6	74.611	32.907			3916700	2233	609	2082	3635	5233	5233		0	9606
RSGASEANLIVAK	Unmodified	1314.7256	0.72556306	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	1	1		1			14.834	14.834	3	0.0017405	5961	DP1145_6	98.592	58.719			18380000	2234	276	2083	3636;3637	5234;5235	5234		1	9606
RTEITIVKPQESAHR	Unmodified	1763.9642	0.9642302	743	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	2	3	0			1			13.934	13.934	4	0.016303	6548	DP1145_8	82.578	59.611			21834000	2235	743	2084	3638	5236	5236		1	9606
RVDPVYIHLAER	Unmodified	1466.7994	0.7993967	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	2	1.22	2	1		1		16.472	16.472	2;3	9.8052E-11	8434	DP1145_6	133.04	112.09			993860000	2236	438	2085	3639;3640;3641;3642	5237;5238;5239;5240;5241	5237		4	9606
RVIERPPLTQQQAAQK	Unmodified	1862.0486	0.048628533	551	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	2	3	0			1			14.331	14.331	3	0.020048	6963	DP1145_8	106.29	67.403			39553000	2237	551	2086	3643	5242	5242		1	9606
RVPFSLLR	Unmodified	986.60253	0.6025348	111	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	1	5	0					1	17.748	17.748	2	0.033296	11243	DP1145_10	104.06	39.85			32451000	2238	111	2087	3644	5243	5243		1	9606
RVPLEQPEMIPSQK	Oxidation (M)	1666.8712	0.87124102	590	Q8NDW8	TTC21A	Tetratricopeptide repeat protein 21A	yes	yes	0	1	1	2	0		1				17.499	17.499	2	0.036745	12670	DP1145_7	61.765	35.015			65623000	2239	590	2088	3645	5244	5244	515	1	9606
RVSALNSVHCEHVEDEGESR	Unmodified	2309.0455	0.045470003	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					14.394	14.394	4;5	2.5642E-29	5430	DP1145_6	162.92	140.69			68362000	2240	438	2089	3646;3647	5245;5246;5247	5245		3	9606
RVSISEGDDKIEYR	Unmodified	1665.8322	0.83221298	200	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	2	4	0				1		15.413	15.413	3	3.4271E-63	7684	DP1145_9	186.42	146.79			79927000	2241	200	2090	3648	5248	5248		0	9606
SAALPIFSSFVSNWDEATKR	Unmodified	2225.1117	0.1116823	85	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	1	3	0			1			22.597	22.597	3	4.7902E-19	19406	DP1145_8	159.44	144.65			38210000	2242	85	2091	3649	5249	5249		1	9606
SADGSAPAGEGEGVTLQR	Unmodified	1700.7966	0.79655575	414	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	4	0				1		15.944	15.944	2	0.0022308	8541	DP1145_9	110.51	73.366			0	2243	414	2092	3650	5250	5250		1	9606
SAEEEAADLPTKPTK	Unmodified	1585.7835	0.78353145	602	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	1	5	0					2	14.865	14.865	2;3	0	6712	DP1145_10	336.33	336.33			166540000	2244	602	2093	3651;3652	5251;5252;5253	5252		3	9606
SAEFLLHMLK	Oxidation (M)	1203.6322	0.63217995	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	1	0	5	0					1	17.647	17.647	2	0.0029706	11190	DP1145_10	107.69	107.69			104250000	2245	193	2094	3653	5254	5254	194	1	9606
SAEFLLHMLK	Unmodified	1187.6373	0.63726532	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	19.594	19.594	2	7.5002E-18	14025	DP1145_10	157.91	79.647			0	2246	193	2094	3654	5255	5255		1	9606
SAFPHLQDAQVK	Unmodified	1339.6884	0.68844927	44	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0		1				16.226	16.226	3	0.021183	10601	DP1145_7	73.273	18.93			31539000	2247	44	2095	3655	5256	5256		1	9606
SAHLQWMVVR	Acetyl (Protein N-term)	1267.6496	0.64956134	280	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	5	0					1	19.633	19.633	2	0.0014623	14233	DP1145_10	110.41	68.121			88492000	2248	280	2096	3656	5257;5258	5258		2	9606
SAILGLPQPLLELNDSPVFK	Unmodified	2150.1987	0.19870639	699	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	2	0		1				23.228	23.228	2	2.79E-05	21127	DP1145_7	123.68	86.998			5154200	2249	699	2097	3657	5259	5259		1	9606
SAINEVVTR	Unmodified	987.53491	0.53490874	379	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	5	0					1	15.522	15.522	2	0.0037595	7864	DP1145_10	111.46	38.207			143550000	2250	379	2098	3658	5260	5260		1	9606
SALASVIMGLSPILGK	Unmodified	1555.9008	0.90075023	229	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	3	0			1			23.345	23.345	2	0.0092312	20508	DP1145_8	100.55	79.553			6029200	2251	229	2099	3659	5261	5261		1	9606
SAPFFIPTIPGLVPR	Unmodified	1610.9184	0.91844921	593	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					22.938	22.938	2	0.005924	18233	DP1145_6	104.82	88.247			9807200	2252	593	2100	3660	5262;5263	5262		2	9606
SASPDDDLGSSNWEAADLGNEER	Unmodified	2434.0157	0.015669242	27	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	4	0				1		19.223	19.223	2	0.0026821	13822	DP1145_9	74.772	57.631			64543000	2253	27	2101	3661	5264	5264		1	9606
SATELFEAYSMAEMTFNPPVESSNPK	2 Oxidation (M)	2908.2783	0.27829121	599	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	2	0	2	0		1				21.798	21.798	3	0.00018455	18949	DP1145_7	70.533	58.337			6151300	2254	599	2102	3662	5265;5266	5266	519;520	2	9606
SCENLAPFNTALK	Unmodified	1463.7079	0.70786408	441	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	4	0				1		18.421	18.421	2	2.1084E-08	12447	DP1145_9	139.31	86.218			0	2255	441	2103	3663	5267	5267		1	9606
SCVEEPEPEPEAAEGDGDKK	Unmodified	2171.9165	0.91647247	305	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	1	4	0				1		14.804	14.804	3	0.0041349	6767	DP1145_9	94.856	68.968			20698000	2256	305	2104	3664	5268;5269	5268		2	9606
SDDDGFEIVPIEDPAK	Unmodified	1745.7996	0.79957544	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				20.364	20.364	2	8.9294E-05	16991	DP1145_7	126.83	99.188			121430000	2257	575	2105	3665	5270	5270		1	9606
SDEAVKPFGLK	Unmodified	1189.6343	0.63428844	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	0	1					16.142	16.142	2	2.712E-37	7943	DP1145_6	179.51	111.61			24186000	2258	290	2106	3666	5271;5272	5272		2	9606
SDGEMVLPGFPDADSFVK	Oxidation (M)	1925.8717	0.87169453	415	Q01780	EXOSC10	Exosome component 10	yes	yes	0	1	0	2	0		1				21.103	21.103	2	0.0053097	17928	DP1145_7	97.69	64.417			9867900	2259	415	2107	3667	5273;5274	5273	372	2	9606
SDGGYTYDTSDLAAIK	Unmodified	1675.7577	0.75771063	319	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	3	0			1			18.823	18.823	2	0.026502	13877	DP1145_8	89.44	52.912			9217500	2260	319	2108	3668	5275	5275		0	9606
SDLEMQYETLQEELMALKK	2 Oxidation (M)	2330.1022	0.10216475	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	2	1	2	0.816	1	1	1			21.347	21.347	3	0.0013606	15948	DP1145_6	100.07	63.028		+	59431000	2261	17	2109	3669;3670;3671	5276;5277;5278	5276	15;16	3	9606
SDLSVIQR	Unmodified	916.49779	0.49779495	667	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	0		1				16.122	16.122	2	0.04509	10438	DP1145_7	84.568	32.086			66713000	2262	667	2110	3672	5279	5279		1	9606
SDMNTVLNYIFSHAQVTK	Oxidation (M)	2083.0044	0.004440036	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					21.282	21.282	3	7.4523E-05	15876	DP1145_6	122.46	101.91			81489000	2263	438	2111	3673	5280;5281	5280	386	2	9606
SDMNTVLNYIFSHAQVTK	Unmodified	2067.0095	0.0095254139	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					22.668	22.668	2;3	2.3221E-152	17949	DP1145_6	231.69	177.35			12357000	2264	438	2111	3674;3675	5282;5283;5284;5285	5284		4	9606
SDPGLLTNTMDVFVK	Unmodified	1635.8178	0.81780846	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					21.46	21.46	2	0.0022866	16110	DP1145_6	140.91	75.186			0	2265	401	2112	3676	5286	5286		1	9606
SEDGEIVSTPR	Unmodified	1188.5622	0.5622457	431	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	1	0	1					15.328	15.328	2	0.0090321	6746	DP1145_6	91.584	40.316			9757300	2266	431	2113	3677	5287	5287		1	9606
SEETNTEIVECILKR	Unmodified	1819.8986	0.89857798	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2	0		1				19.355	19.355	3	0.0084305	15387	DP1145_7	84.566	57.359			15290000	2267	276	2114	3678	5288	5288		0	9606
SELDTIDSQHR	Unmodified	1299.6055	0.6055075	272	P43004	SLC1A2	Excitatory amino acid transporter 2	yes	yes	0	0	0	3	2	1				1	15.13	15.13	3	4.3188E-13	7101	DP1145_10	148.56	117.27			68101000	2268	272	2115	3679;3680	5289;5290;5291	5289		3	9606
SELLSQLQQHEEESR	Unmodified	1811.865	0.86496967	610	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	4	0				1		17.322	17.322	3	0.0019167	10786	DP1145_9	115.06	70.639			32666000	2269	610	2116	3681	5292	5292		0	9606
SEQEFQEQLESAR	Unmodified	1579.7114	0.71142914	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	17.624	17.624	2	3.4600000000000004E-56	12864	DP1145_7	185.96	127.26			3887099999.9999995	2270	639	2117	3682;3683;3684;3685;3686	5293;5294;5295;5296;5297;5298	5295		6	9606
SETAPAAPAAAPPAEK	Acetyl (Protein N-term)	1519.7518	0.75183739	176	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	3.25	1.48	1		1	1	1	16.359	16.359	2	3.2576E-12	9072	DP1145_9	181.66	18.98			1457699999.9999998	2271	176	2118	3687;3688;3689;3690	5299;5300;5301;5302;5303;5304	5303		6	9606
SETAPAAPAAAPPAEK	Unmodified	1477.7413	0.7412727	176	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	4	0				1		14.804	14.804	2	4.4024E-11	6665	DP1145_9	140.14	10.799			53114000	2272	176	2118	3691	5305	5305		1	9606
SETAPAAPAAPAPAEK	Unmodified	1477.7413	0.7412727	150	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	4	0				1		14.804	14.804	2	0.026443	6712	DP1145_9	73.466	0			53114000	2273	150	2119	3692	5306	5306		1	9606
SETAPAAPAAPAPAEKTPVKK	Acetyl (Protein N-term)	2073.1106	0.11061967	150	P10412	HIST1H1E	Histone H1.4	yes	yes	1	0	2	4	0				1		14.895	14.895	3	0.00041994	6822	DP1145_9	103.87	85.4			9209600	2274	150	2120	3693	5307	5307		1	9606
SETAPLAPTIPAPAEK	Acetyl (Protein N-term)	1633.8563	0.85630246	175	P16402	HIST1H1D	Histone H1.3	yes	yes	1	0	0	4	0				1		19.523	19.523	2	0.0034168	14215	DP1145_9	77.74	45.581			47846000	2275	175	2121	3694	5308	5308		1	9606
SEVPEDLAGFIELFQTPSHTK	Unmodified	2344.1587	0.15869207	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	1		1		1		22.968	22.968	3	4.6784E-05	20759	DP1145_7	114.56	99.079			15300000	2276	276	2122	3695;3696	5309;5310;5311	5309		2	9606
SFDKGPFATFK	Unmodified	1243.6237	0.62372375	545	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	1	4	0				1		17.822	17.822	3	0.040848	11623	DP1145_9	62.338	31.052			15648000	2277	545	2123	3697	5312	5312		1	9606
SFFSEIISSISDVK	Unmodified	1557.7926	0.79263957	387	P63151;Q00005;Q66LE6	PPP2R2A;PPP2R2B;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	yes	no	0	0	0	3	0			1			24.543	24.543	2	9.0415E-18	22181	DP1145_8	181.4	161.19			7850700	2278	387	2124	3698	5313;5314	5313		2	9606
SFGLPSIGR	Unmodified	932.50797	0.50796571	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			18.925	18.925	2	3.1616E-06	12416	DP1145_6	141.52	51.766			1441900000	2279	115	2125	3699;3700;3701	5315;5316;5317;5318	5315		4	9606
SFLLDLLNATGK	Unmodified	1290.7184	0.71835242	39	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	4	0				1		23.176	23.176	2	0.033467	19383	DP1145_9	79.974	16.494			2956200	2280	39	2126	3702	5319	5319		0	9606
SFNDDAMLIEK	Oxidation (M)	1297.586	0.58601761	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	1	0	1					17.654	17.654	2	0.0077031	10517	DP1145_6	87.258	50.811			93299000	2281	639	2127	3703	5320	5320	543	1	9606
SFYPEEVSSMVLTK	Oxidation (M)	1631.7753	0.77527495	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	1	0	3	0			1			19.124	19.124	2	0.019027	14301	DP1145_8	73.273	42.205			169090000	2282	154	2128	3704	5321	5321	154	1	9606
SGASEANLIVAK	Unmodified	1158.6245	0.62445203	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0.816	1	1	1			16.073	16.073	2	2.7895E-11	10240	DP1145_7	142.98	59.335			631210000	2283	276	2129	3705;3706;3707	5322;5323;5324;5325;5326;5327	5325		6	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	2 Oxidation (M)	3026.3824	0.38237913	391	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	2	1	4	1			1		1	19.389	19.389	3	1.0363E-09	14888	DP1145_8	106.11	95.5			77439000	2284	391	2130	3708;3709	5328;5329;5330	5329	330;331	3	9606
SGDAAIVDMVPGKPMCVESFSDYPPLGR	Oxidation (M)	3010.3875	0.38746451	391	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	1	0	1					20.153	20.153	3	0.026621	14205	DP1145_6	54.958	29.808			0	2285	391	2130	3710	5331	5331	330;331	1	9606
SGEVLVNVK	Unmodified	943.53385	0.53384611	445	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	4	0				1		15.714	15.714	2	0.0050361	8232	DP1145_9	98.458	54.063			11388000	2286	445	2131	3711	5332	5332		1	9606
SGGSGHAVAEPASPEQELDQNKGK	Unmodified	2392.1255	0.12549446	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				14.743	14.743	4	0.00035711	5824	DP1145_6	75.224	66.834			48773000	2287	276	2132	3712;3713	5333;5334	5333		2	9606
SGIPDEVLQSILDQYSNK	Unmodified	2005.0004	0.0004005156	769	Q9Y2X9	ZNF281	Zinc finger protein 281	yes	yes	0	0	0	2	0		2				23.412	23.412	2;3	9.4108E-12	21409	DP1145_7	164.13	99.905			5993900	2288	769	2133	3714;3715	5335;5336	5335		2	9606
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	Oxidation (M)	3352.5055	0.50548247	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2	0		1				18.199	18.199	4	0.00010774	13797	DP1145_7	52.234	35.158			407850000	2289	158	2134	3716	5337	5337	169	1	9606
SGPFGQIFRPDNFVFGQSGAGNNWAK	Unmodified	2797.3361	0.33609636	395;131;460	P07437;P68371;P04350;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	1	3	0.707		1	2	1		21.537	21.537	2;3	4.767100000000001E-215	17870	DP1145_8	243.01	218.48			1068699999.9999999	2290	131;395;460	2135	3717;3718;3719;3720	5338;5339;5340;5341;5342;5343;5344;5345;5346	5344		9	9606
SGVDGPHFPLSLSTCLFGR	Unmodified	2045.9993	0.99929508	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.33	0.471		2	1			21.329	21.329	2;3	2.2948E-10	18191	DP1145_7	106.44	69.26			22738000	2291	276	2136	3721;3722;3723	5347;5348;5349;5350	5349		4	9606
SGVSDHWALDDHHALHLTR	Unmodified	2166.0355	0.035497664	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.33	0.943	2		4			16.677	16.677	2;3;4;5	6.8766E-30	10680	DP1145_8	157.51	131.52			5896799999.999999	2292	700	2137	3724;3725;3726;3727;3728;3729	5351;5352;5353;5354;5355;5356;5357;5358;5359;5360	5360		9	9606
SGVSLAALK	Unmodified	844.50182	0.5018177	150;176;175	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	no	no	0	0	0	4	0				1		16.923	16.923	2	0.0022248	10245	DP1145_9	104.44	46.626			1935599999.9999998	2293	176;150;175	2138	3730	5361	5361		1	9606
SGVSLAALKK	Unmodified	972.59678	0.59678072	150;176;175	P16403;P10412;P16402	HIST1H1C;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				1		15.218	15.218	2	0.026851	7418	DP1145_9	96.331	53.462			239200000	2294	176;150;175	2139	3731	5362	5362		1	9606
SHFEQWGTLTDCVVMRDPNTK	Unmodified	2520.1526	0.15257761	143	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	4	0				1		18.723	18.723	3	0.031881	12841	DP1145_9	70.501	43.168			36106000	2295	143	2140	3732	5363	5363		1	9606
SIFQHIQSAQSQR	Unmodified	1528.7746	0.77463852	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		2				16.225	16.225	2;3	0.0020089	10519	DP1145_7	90.861	42.252			297280000	2296	767	2141	3733;3734	5364;5365	5364		2	9606
SIGVPIK	Acetyl (Protein N-term)	754.45889	0.45889025	364	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	1	0	0	5	0					1	18.648	18.648	1	0.016729	12701	DP1145_10	92.191	47.66			43174000	2297	364	2142	3735	5366	5366		0	9606
SILLATDVASR	Unmodified	1144.6452	0.64518747	683	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	3	0			1			17.862	17.862	2	0.045538	12567	DP1145_8	68.847	30.544			63576000	2298	683	2143	3736	5367	5367		1	9606
SILLSVPLLVVDNK	Unmodified	1508.9178	0.91778051	315	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	0	1					22.398	22.398	2	1.8176E-05	17563	DP1145_6	127.83	61.532			7621300	2299	315	2144	3737	5368;5369	5369		2	9606
SILTQIDHILMDKER	Oxidation (M)	1826.956	0.95603328	724	Q9NY61	AATF	Protein AATF	yes	yes	0	1	1	2.5	0.5		1	1			20.729	20.729	3	0.0096463	16694	DP1145_8	86.738	60.147			100170000	2300	724	2145	3738;3739	5370;5371	5371	607	1	9606
SILVSPTGPSR	Unmodified	1112.619	0.61897272	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.388	16.388	2	2.251E-64	8959	DP1145_10	195.79	106.97			24510000000	2301	474	2146	3740;3741;3742;3743;3744	5372;5373;5374;5375;5376;5377;5378;5379;5380;5381;5382;5383;5384;5385;5386;5387	5374		16	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	Oxidation (M)	2676.216	0.21596573	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			17.624	17.624	3	1.0276E-05	12253	DP1145_8	100.19	86.123			789330000	2302	639	2147	3745;3746	5388;5389	5389	550	2	9606
SIMAAAGVPVVEGYHGEDQSDQCLK	Unmodified	2660.2211	0.22105111	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.523	18.523	3	1.3767999999999999E-19	13528	DP1145_8	144.4	125.52			179970000	2303	639	2147	3747	5390	5390		1	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	Oxidation (M)	3169.4557	0.4556955	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	1	2.2	1.17	2	1	1	1		16.534	16.534	4;5	3.069E-25	9520	DP1145_9	138.96	115.04			312710000	2304	639	2148	3748;3749;3750;3751;3752	5391;5392;5393;5394;5395	5395	550	4	9606
SIMAAAGVPVVEGYHGEDQSDQCLKEHAR	Unmodified	3153.4608	0.46078088	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	1	1	0	1					17.153	17.153	5	1.0655E-05	9572	DP1145_6	77.401	59.955			7151400	2305	639	2148	3753	5396	5396		0	9606
SINPDEAVAYGAAVQAAILMGDK	Oxidation (M)	2319.1417	0.1416618	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	1	0	3.33	0.471			2	1		22.688	22.688	2;3	6.7365E-12	19533	DP1145_8	137.52	105.45			163460000	2306	148	2149	3754;3755;3756	5397;5398;5399;5400;5401;5402	5400	144	6	9606
SINPDEAVAYGAAVQAAILMGDK	Unmodified	2303.1467	0.14674718	148	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	no	no	0	0	0	3	0			2			23.275	23.275	2;3	1.8466E-31	20464	DP1145_8	187.56	167.96			65387000	2307	148	2149	3757;3758	5403;5404	5404		2	9606
SINPDEAVAYGAAVQAAILSGDK	Unmodified	2259.1383	0.13829098	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			22.788	22.788	2	2.7001E-117	19501	DP1145_8	209.23	200.19			47685000	2308	154	2150	3759	5405;5406	5405		2	9606
SIPLDEGEDEAQR	Unmodified	1457.6634	0.66341631	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.247	16.247	2	0.013408	8051	DP1145_6	113.44	89.102			0	2309	466	2151	3760	5407	5407		1	9606
SIQFVDWCPTGFK	Unmodified	1583.7442	0.74424959	393;394	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	2.5	1.12	1	1	1	1		21.074	21.074	2	5.8198E-24	17283	DP1145_8	159.09	126.83			615990000	2310	393;394	2152	3761;3762;3763;3764	5408;5409;5410;5411;5412	5410		5	9606
SISISVAR	Unmodified	831.48142	0.48141661	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.41	1	1	1	1	1	16.092	16.092	2	6.080299999999999E-44	7787	DP1145_6	186.43	48.355		+	818380000	2311	11	2153	3765;3766;3767;3768;3769	5413;5414;5415;5416;5417;5418;5419;5420;5421	5415		9	9606
SISLYYTGEK	Unmodified	1159.5761	0.57610486	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		1	1			17.599	17.599	2	0.004575	12793	DP1145_7	117.81	71.682			254340000	2312	194	2154	3770;3771	5422;5423	5422		2	9606
SITVLVEGENTR	Unmodified	1316.6936	0.69359423	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				17.373	17.373	2	0.020013	12350	DP1145_7	97.472	34.045			0	2313	236	2155	3772	5424	5424		1	9606
SIVAVEPR	Unmodified	869.49707	0.49706667	533	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.196	16.196	2	0.0031733	8808	DP1145_10	110.34	14.544			2443300000	2314	533	2156	3773;3774;3775;3776;3777	5425;5426;5427;5428;5429;5430;5431;5432	5425		7	9606
SIYYITGESK	Unmodified	1159.5761	0.57610486	136;521	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2	0		1				17.199	17.199	2	0.023166	12161	DP1145_7	82.749	43.103			185790000	2315	136;521	2157	3778	5433	5433		1	9606
SKELTTEIDNNIEQISSYK	Unmodified	2211.0907	0.090672086	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	1	2.67	1.25	1		1	1		19.132	19.132	2	0.001499	13217	DP1145_6	125.61	95.168		+	866180000	2316	15	2158	3779;3780;3781	5434;5435;5436	5434		2	9606
SKKDDINLLPSK	Unmodified	1356.7613	0.76127986	757	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	2	2	0		1				14.952	14.952	3	0.02892	8634	DP1145_7	87.498	13.617			14114000	2317	757	2159	3782	5437	5437		1	9606
SKSEEAHAEDSVMDHHFR	Oxidation (M)	2126.9076	0.90757954	588	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	1	1	3.5	0.5			1	1		13.899	13.899	4	0.0049059	6331	DP1145_8	78.225	66.333			33092000	2318	588	2160	3783;3784	5438;5439;5440	5438	512	2	9606
SKVDEAVAVLQAHQAK	Unmodified	1692.9159	0.91588303	160	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	yes	no	0	0	1	3	0			1			16.823	16.823	3	0.028112	10790	DP1145_8	109.35	86.917			142840000	2319	160	2161	3785	5441	5441		0	9606
SLADELALVDVLEDK	Unmodified	1628.8509	0.85088273	129	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	4	0				1		23.342	23.342	2	9.9862E-35	19628	DP1145_9	168.83	117.22			2902800	2320	129	2162	3786	5442	5442		1	9606
SLAGSSGPGASSGTSGDHGELVVR	Unmodified	2184.0407	0.040702201	225	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	4	0				1		15.677	15.677	3	0.00096547	8291	DP1145_9	68.705	44.167			64333000	2321	225	2163	3787	5443	5443		1	9606
SLCREEAETPAEATGKPQR	Unmodified	2129.0171	0.017129987	584	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	2	2	0		1				14.03	14.03	4	0.027626	7374	DP1145_7	75.017	51.164			29538000	2322	584	2164	3788	5444	5444		1	9606
SLDFPQNEPQIK	Unmodified	1414.7092	0.70924429	591	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	3	0			1			17.823	17.823	2	0.0064315	12574	DP1145_8	94.309	65.732			77465000	2323	591	2165	3789	5445;5446	5446		2	9606
SLDLDSIIAEVK	Unmodified	1301.7078	0.70784731	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2.5	1.12	1	1	1	1		22.078	22.078	2	7.025299999999999E-44	17007	DP1145_6	215.06	132.78		+	328180000	2324	11	2166	3790;3791;3792;3793	5447;5448;5449;5450;5451;5452;5453;5454;5455	5448		9	9606
SLDSFLLSPEAAVGLLK	Unmodified	1758.9768	0.97675195	785	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	2	0		1				23.549	23.549	2	2.5135000000000002E-25	21599	DP1145_7	156.14	118.54			4994500	2325	785	2167	3794	5456;5457	5456		2	9606
SLEEDQEPIVSHQKPGK	Unmodified	1919.9589	0.95887005	467	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	1	2.75	0.829		2	1	1		14.409	14.409	3;4	1.6281E-18	7044	DP1145_8	147.51	115.35			377080000	2326	467	2168	3795;3796;3797;3798	5458;5459;5460;5461	5460		2	9606
SLEEIYLFSLPIK	Unmodified	1550.8596	0.85959692	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	3	2	1				1	22.977	22.977	2	3.4600000000000004E-56	18840	DP1145_10	185.96	120.49			10216000	2327	173	2169	3799;3800	5462;5463;5464	5462		3	9606
SLEELPVDIILASVG	Unmodified	1553.8552	0.85523983	787	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	2	0		1				26.631	26.631	2	0.014433	25678	DP1145_7	111.06	80.448			4380800	2328	787	2170	3801	5465;5466;5467	5467		3	9606
SLFEQYGK	Unmodified	970.476	0.47599688	651	Q9BQ04;Q9BWF3	RBM4B;RBM4	RNA-binding protein 4B;RNA-binding protein 4	yes	no	0	0	0	4	0				1		17.422	17.422	2	0.023475	10973	DP1145_9	91.9	50.471			14329000	2329	651	2171	3802	5468	5468		1	9606
SLGNILQAKPTSSPAK	Unmodified	1610.8992	0.89917033	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2	0.816	1	1	1			16.315	16.315	3	0.00045602	10687	DP1145_7	155.37	112.95			787110000	2330	451	2172	3803;3804;3805	5469;5470;5471	5470		3	9606
SLGPPQGEEDSVPR	Unmodified	1466.7001	0.70013617	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.222	16.222	2	2.5376E-07	7877	DP1145_6	133.42	95.116			129400000	2331	401	2173	3806	5472;5473	5472		2	9606
SLGSVQAPSYGAR	Unmodified	1291.6521	0.65206377	121	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	3	0			1			16.337	16.337	2	1.7091E-12	9954	DP1145_8	161.51	117.74			164490000	2332	121	2174	3807	5474	5474		1	9606
SLGTADVHFER	Unmodified	1230.5993	0.59929991	564	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	4	0				2		16.078	16.078	2;3	8.2751E-09	8744	DP1145_9	135.43	110.29			202220000	2333	564	2175	3808;3809	5475;5476;5477;5478	5476		4	9606
SLHSAGPPLLAVTAAPPAQPLAK	Unmodified	2206.2474	0.24738792	214	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	2	0		1				18.465	18.465	3	0.010175	14066	DP1145_7	80.362	58.589			9681900	2334	214	2176	3810	5479	5479		0	9606
SLHTLFGDELCK	Unmodified	1418.6864	0.68640036	10	CON__P02769			yes	yes	0	0	0	3	0			1			18.323	18.323	3	8.162799999999999E-50	13201	DP1145_8	143.97	112.83		+	48575000	2335	10	2177	3811	5480	5480		0	
SLICSISNEVPEHPCVSPVSNHVYER	Acetyl (Protein N-term)	3050.4226	0.42260446	759	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	1	0	0	3	0			1			19.924	19.924	3	8.0642E-11	15533	DP1145_8	127.35	101.54			28384000	2336	759	2178	3812	5481	5481		1	9606
SLLIDFFR	Unmodified	1009.5597	0.55966693	691	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	4	0				1		22.524	22.524	2	0.0072187	18514	DP1145_9	102.72	61.217			30232000	2337	691	2179	3813	5482	5482		1	9606
SLLVIPNTLAVNAAQDSTDLVAK	Unmodified	2352.29	0.2900406	188	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			21.724	21.724	2	1.7122999999999999E-22	18193	DP1145_8	151.49	121.85			30695000	2338	188	2180	3814	5483;5484	5483		2	9606
SLMPYFLLTQAVR	Oxidation (M)	1553.8276	0.82758529	55	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	1	0	1	0	1					21.575	21.575	2	0.00050468	16239	DP1145_6	113.63	87.512			8180800	2339	55	2181	3815	5485;5486	5485	47	2	9606
SLMPYFLLTQAVR	Unmodified	1537.8327	0.83267067	55	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	3	0			1			22.597	22.597	2	0.016178	19506	DP1145_8	99.283	64.509			9467400	2340	55	2181	3816	5487	5487		0	9606
SLNNQFASFIDK	Unmodified	1382.683	0.68302954	11	P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1.5	0.5	1	1				19.709	19.709	2	7.9897E-06	16033	DP1145_7	128.03	100.21		+	139280000	2341	11	2182	3817;3818	5488;5489	5489		2	9606
SLPDLGLR	Unmodified	869.49707	0.49706667	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			18.411	18.411	2	8.9182E-07	13903	DP1145_7	145.04	81.739			1421700000	2342	158	2183	3819;3820	5490;5491;5492;5493;5494	5490		5	9606
SLPDTELMKDTAR	Oxidation (M)	1491.7239	0.72390808	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2.33	1.25	1	1		1		15.392	15.392	3	0.0197	9298	DP1145_7	81.239	59.886			108170000	2343	276	2184	3821;3822;3823	5495;5496;5497	5496	255	3	9606
SLTNDWEDHLAVK	Unmodified	1526.7365	0.73652168	136;132	P07900;P08238	HSP90AA1;HSP90AB1	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta	no	no	0	0	0	2	0		1				18.298	18.298	3	0.0068387	13711	DP1145_7	96.604	58.61			172630000	2344	132;136	2185	3824	5498	5498		0	9606
SLVHAGVPASYLLIPAASYVLPEVSK	Unmodified	2680.484	0.48398938	745	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	3	0			1			22.242	22.242	3	0.013944	19008	DP1145_8	25.74	0.49015			10923000	2345	745	2186	3825	5499	5499		1	9606
SLVMHTPPVLK	Oxidation (M)	1236.69	0.69002918	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	2	0		2				15.445	15.445	2;3	0.0067756	9389	DP1145_7	89.08	53.927			57541000	2346	276	2187	3826;3827	5500;5501;5502	5502	256	3	9606
SLVMHTPPVLKK	Oxidation (M)	1364.785	0.78499219	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2	0		1				14.456	14.456	3	0.041909	7822	DP1145_7	56.087	9.2072			0	2347	276	2188	3828	5503	5503	256	1	9606
SLVQANPEVAMDSIIHMTQHISPTQR	2 Oxidation (M)	2934.4328	0.43277522	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	2	0	2.25	1.3	2		1	1		17.928	17.928	3;4	7.9938E-09	11000	DP1145_6	118.08	103.66			572280000	2348	438	2189	3829;3830;3831;3832	5504;5505;5506;5507;5508;5509;5510;5511	5509	409;410	7	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Oxidation (M)	2918.4379	0.43786059	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	3					19.658	19.658	3;4	8.4872E-37	12861	DP1145_6	159.53	141.23			449250000	2349	438	2189	3833;3834;3835	5512;5513;5514;5515	5513	409;410	3	9606
SLVQANPEVAMDSIIHMTQHISPTQR	Unmodified	2902.4429	0.44294597	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					21.196	21.196	3;4	3.2223E-60	15742	DP1145_6	174.25	155.29			47251000	2350	438	2189	3836;3837	5516;5517;5518	5516		3	9606
SLVSKGTLVQTK	Unmodified	1259.7449	0.74490152	150;176;175	P16403;Q02539;P16401;P10412;P16402	HIST1H1C;HIST1H1A;HIST1H1B;HIST1H1E;HIST1H1D	Histone H1.2;Histone H1.1;Histone H1.5;Histone H1.4;Histone H1.3	no	no	0	0	1	4	0				1		14.804	14.804	2	0.0012603	6865	DP1145_9	111.5	71.874			15352000	2351	176;150;175	2190	3838	5519	5519		0	9606
SLYASSPGGVYATR	Unmodified	1427.7045	0.70449327	137	P08670	VIM	Vimentin	yes	yes	0	0	0	3	0			1			16.923	16.923	2	2.6934E-17	10930	DP1145_8	150.09	106.44			302360000	2352	137	2191	3839	5520	5520		1	9606
SMFAGVPTMR	2 Oxidation (M)	1127.5104	0.51035025	47	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	2	0	1	0	1					15.933	15.933	2	0.031223	7507	DP1145_6	51.528	23.646			69927000	2353	47	2192	3840	5521	5521	42;43	0	9606
SMLMEQDPDVAVTVR	2 Oxidation (M)	1721.7964	0.7964211	599	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	2	0	4	0				1		17.006	17.006	2	0.0043269	10221	DP1145_9	112.51	79.097			0	2354	599	2193	3841	5522	5522	521;522	1	9606
SMPIRKDDEVQVVR	Oxidation (M)	1686.8723	0.87230365	342	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	1	2	5	0					1	14.062	14.062	3	0.024314	5533	DP1145_10	75.316	31.184			35169000	2355	342	2194	3842	5523	5523	308	1	9606
SMPIRKDDEVQVVR	Unmodified	1670.8774	0.87738903	342	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	2	5	0					1	14.862	14.862	3	0.041786	6713	DP1145_10	59.227	36.836			16641000	2356	342	2194	3843	5524	5524		0	9606
SNEILTAIIQGMR	Oxidation (M)	1460.7657	0.76571331	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	2	0		1				20.431	20.431	2	0.0048354	17108	DP1145_7	90.05	49.699			15169000	2357	478	2195	3844	5525	5525	453	1	9606
SNLMDAISFVLGEK	Oxidation (M)	1538.765	0.76504461	473	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	1	0	2	0		1				23.045	23.045	2	0.0046674	20809	DP1145_7	100.55	67.801			0	2358	473	2196	3845	5526	5526	440	1	9606
SNNVEMDWVLK	Oxidation (M)	1349.6286	0.62855113	232	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	4	0				1		18.423	18.423	2	0.0097832	12558	DP1145_9	83.647	40.783			9647500	2359	232	2197	3846	5527	5527	219	1	9606
SNQQLVDIIEK	Unmodified	1285.6878	0.68778057	343	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	4	0				1		18.523	18.523	2	0.0018057	12573	DP1145_9	103.31	34.466			30781000	2360	343	2198	3847	5528	5528		1	9606
SNYVPPPETYTTEK	Unmodified	1624.7621	0.76206772	582	Q8N6N3	C1orf52	UPF0690 protein C1orf52	yes	yes	0	0	0	5	0					1	16.403	16.403	2	0.0034638	9046	DP1145_10	106.26	58.07			13969000	2361	582	2199	3848	5529	5529		1	9606
SPAGLQVLNDYLADK	Unmodified	1602.8253	0.82533668	208	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	4	0				1		20.956	20.956	2	7.336200000000001E-45	16153	DP1145_9	176.99	129.43			0	2362	208	2200	3849	5530	5530		1	9606
SPAGPAATPAQAQAASTPR	Unmodified	1748.8806	0.88056015	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.962	14.962	2	2.2474999999999997E-286	6147	DP1145_6	274.38	255.57			458740000	2363	451	2201	3850;3851;3852;3853	5531;5532;5533;5534;5535;5536;5537;5538	5531		8	9606
SPASIEVVKPMEAASAILSQADAR	Oxidation (M)	2456.2581	0.25808854	668	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	1	1	3	0			1			19.471	19.471	3	3.0966E-09	14968	DP1145_8	121.48	92.523			34471000	2364	668	2202	3854	5539;5540	5539	570	2	9606
SPEAKPLPGKLPK	Unmodified	1360.8078	0.80783613	277	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	2	2.5	0.5		1	1			13.932	13.932	3	0.00069924	7240	DP1145_7	118.61	87.878			28824000	2365	277	2203	3855;3856	5541;5542;5543	5542		2	9606
SPGSTPTTPTSSQAPQK	Unmodified	1670.8111	0.81114318	247	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1.5	0.5	1	1				13.808	13.808	2	6.2527E-07	6901	DP1145_7	130.44	90.498			3699500	2366	247	2204	3857;3858	5544;5545	5545		2	9606
SPHIETYLKK	Unmodified	1214.6659	0.66592292	459	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	1	2	0		1				14.734	14.734	3	0.0067003	8213	DP1145_7	99.013	72.571			20050000	2367	459	2205	3859	5546	5546		1	9606
SPLLPAVLEGLAK	Unmodified	1306.786	0.78603805	599	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	1.5	0.5	1	1				21.683	21.683	2	1.5023E-08	18797	DP1145_7	136.49	89.291			264460000	2368	599	2206	3860;3861	5547;5548;5549;5550	5549		4	9606
SPLQSVVVR	Unmodified	983.57638	0.57637963	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.5	0.5	1	1				16.537	16.537	2	0.0029555	11082	DP1145_7	101.72	49.319			169980000	2369	767	2207	3862;3863	5551;5552;5553	5553		2	9606
SPLSALAR	Unmodified	813.47085	0.47085192	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1.5	0.5	1	1				16.775	16.775	2	7.0571E-57	11401	DP1145_7	189.62	46.25			87212000	2370	655	2208	3864;3865	5554;5555;5556;5557	5556		3	9606
SPLVAAMQHFLPVLK	Unmodified	1649.9327	0.93271906	93	O95373	IPO7	Importin-7	yes	yes	0	0	0	2	0		2				21.941	21.941	2;3	1.6823E-36	19265	DP1145_7	172.13	144.65			32313000	2371	93	2209	3866;3867	5558;5559;5560	5559		3	9606
SPNLWLK	Unmodified	856.48069	0.48068833	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.999	17.999	2	0.018042	10805	DP1145_6	105.2	39.938			17842000	2372	401	2210	3868	5561;5562	5561		2	9606
SPPPELTDTATSTK	Unmodified	1443.7093	0.70930387	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.25	1.09	1	2		1		15.605	15.605	2	9.2208E-102	9353	DP1145_7	205.56	148.01			27702000	2373	276	2211	3869;3870;3871;3872	5563;5564;5565;5566;5567	5565		5	9606
SPPPESMDTPTSTR	Unmodified	1501.6719	0.67187251	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1.5	0.5	1	1				14.851	14.851	2	0.00095538	6156	DP1145_6	94.767	69.208			34328000	2374	276	2212	3873;3874	5568;5569	5568		2	9606
SPPPESVDTPTSTK	Unmodified	1441.6937	0.69365381	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	3	1.41	1	1	1	1	1	14.342	14.342	2	9.6065E-73	7670	DP1145_7	193.28	160.09			240360000	2375	276	2213	3875;3876;3877;3878;3879	5570;5571;5572;5573;5574;5575;5576;5577;5578	5573		8	9606
SPQILVPTLFNLLSR	Unmodified	1696.9876	0.98759141	689	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	2	0		1				23.869	23.869	2	0.0080466	22078	DP1145_7	89.403	45.215			2868700	2376	689	2214	3880	5579;5580	5580		2	9606
SPQNQYPAELMR	Unmodified	1432.6769	0.67689831	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	2	0		1				17.399	17.399	2	0.0015459	12445	DP1145_7	113.93	83.362			18086000	2377	236	2215	3881	5581	5581		1	9606
SPQPDPVDTPASTK	Unmodified	1438.694	0.69398816	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2.5	1.12	1	1	1	1		14.719	14.719	2	4.0595000000000004E-73	8236	DP1145_7	196.02	164.53			163540000	2378	276	2216	3882;3883;3884;3885	5582;5583;5584;5585;5586;5587	5584		6	9606
SPQPDPVGTPTIFKPQSK	Unmodified	1923.0102	0.010177341	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1	0	1					17.053	17.053	3	0.01682	9524	DP1145_6	114.52	102.83			28766000	2379	276	2217	3886	5588	5588		1	9606
SPQVKPASTMGMGPLGK	2 Oxidation (M)	1716.8539	0.85387639	451	Q13428	TCOF1	Treacle protein	yes	yes	0	2	1	2.5	1.12	1	1	1	1		14.22	14.22	3	0.00037847	7513	DP1145_7	119.51	100.43			453130000	2380	451	2218	3887;3888;3889;3890	5589;5590;5591;5592;5593;5594	5592	424;425	6	9606
SPQVKPASTMGMGPLGK	Oxidation (M)	1700.859	0.85896177	451	Q13428	TCOF1	Treacle protein	yes	yes	0	1	1	1.5	0.5	1	1				15.254	15.254	3	0.0082659	6728	DP1145_6	93.181	68.476			89918000	2381	451	2218	3891;3892	5595;5596	5595	424;425	2	9606
SPSDEYKDNLHQVSK	Unmodified	1745.822	0.82204222	752	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	4.25	0.433				3	1	14.388	14.388	2;3;4	1.383E-120	6234	DP1145_9	218.02	178			158590000	2382	752	2219	3893;3894;3895;3896	5597;5598;5599;5600	5599		3	9606
SPSDEYKDNLHQVSKR	Unmodified	1901.9232	0.92315325	752	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	2	5	0					1	14.062	14.062	4	0.042317	5639	DP1145_10	59.68	37.353			3468900	2383	752	2220	3897	5601	5601		0	9606
SPSELFAQHIVTIVHHVK	Unmodified	2041.1109	0.11089444	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	2	0		2				18.595	18.595	3;4	0.0084478	14223	DP1145_7	115.57	92.043			238420000	2384	767	2221	3898;3899	5602;5603;5604	5604		2	9606
SPTWFGIPR	Unmodified	1059.5502	0.55016488	399	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	2	0		1				19.864	19.864	2	0.042067	16055	DP1145_7	82.452	31.393			11766000	2385	399	2222	3900	5605	5605		0	9606
SPVTFLSDLR	Unmodified	1133.6081	0.60807369	3	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1	0	1					20.155	20.155	2	5.7952E-07	14144	DP1145_6	138.4	76.396			5009600	2386	3	2223	3901	5606	5606		1	9606
SPYQEFTDHLVK	Unmodified	1462.7092	0.70924429	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	4	0				1		18.223	18.223	3	2.7876E-11	12172	DP1145_9	148.13	121.72			412410000	2387	173	2224	3902	5607;5608	5608		2	9606
SQIHDIVLVGGSTR	Unmodified	1480.7998	0.79979063	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			2			16.74	16.74	2;3	0.0050846	10811	DP1145_8	108.32	74.363			1057099999.9999999	2388	154	2225	3903;3904	5609;5610	5610		2	9606
SQIHEPENLMPTQIIPGK	Oxidation (M)	2047.0408	0.040825542	781	Q9Y4C1	KDM3A	Lysine-specific demethylase 3A	yes	yes	0	1	0	5	0					1	21.099	21.099	2	0.0043761	16162	DP1145_10	84.479	9.8684			623520000	2389	781	2226	3905	5611	5611	643	1	9606
SQPDPVDTPTSSKPQSK	Unmodified	1797.8745	0.87447172	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	2.5	1.12	1	1	1	1		13.108	13.108	3	2.6535E-12	5328	DP1145_8	179.97	179.97			53965000	2390	276	2227	3906;3907;3908;3909	5612;5613;5614;5615;5616;5617;5618;5619	5616		8	9606
SQVFSTAADGQTQVEIK	Unmodified	1807.8952	0.89520716	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.523	17.523	2	0.008697	11876	DP1145_8	123.28	80.646			158940000	2391	254	2228	3910	5620	5620		1	9606
SQYEQLAEQNR	Unmodified	1364.6321	0.6320566	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	3.5	0.5			1	1		15.566	15.566	2	2.2538E-131	8886	DP1145_8	249.03	196.09		+	77043000	2392	15	2229	3911;3912	5621;5622;5623	5621		3	9606
SREIFLSQPILLELEAPLK	Unmodified	2195.2566	0.25655562	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	1	3.33	0.471			2	1		22.235	22.235	2;3	6.7577E-37	18036	DP1145_9	164.69	146.16			127410000	2393	251;352	2230	3913;3914;3915	5624;5625;5626;5627;5628;5629	5627		6	9606
SRFWYFVSQLK	Unmodified	1459.7612	0.76122028	418	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	1	5	0					1	20.887	20.887	2	0.035797	15887	DP1145_10	86.898	34.731			8035600	2394	418	2231	3916	5630	5630		0	9606
SRPTSEGSDIESTEPQK	Unmodified	1846.8545	0.85446456	517	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	1	3	0			1			13.834	13.834	3	7.8084E-07	6285	DP1145_8	132.4	84.186			7389400	2395	517	2232	3917	5631	5631		0	9606
SRYEQVDLVGK	Unmodified	1292.6725	0.67246486	652	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	1	2	0		1				15.544	15.544	2	5.403E-18	9516	DP1145_7	157.38	84.13			32239000	2396	652	2233	3918	5632	5632		1	9606
SSAVVVDAIPVFLEK	Unmodified	1572.8763	0.87630962	472	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	2	0		1				21.404	21.404	2	0.031883	18378	DP1145_7	89.805	65.774			0	2397	472	2234	3919	5633	5633		1	9606
SSDLIQHQATHTGEKPYK	Unmodified	2039.0072	0.007217228	741	Q9UEG4	ZNF629	Zinc finger protein 629	yes	yes	0	0	1	2	0		1				13.688	13.688	3	6.4175E-07	6814	DP1145_7	141.86	111.75			5322100	2398	741	2235	3920	5634;5635	5634		2	9606
SSDVHSSGSSDAHMDASGPSDSDMPSR	Oxidation (M)	2721.0515	0.051479176	46	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	1	0	2	0		1				13.81	13.81	4	2.8694E-05	7010	DP1145_7	64.256	63.235			1558900	2399	46	2236	3921	5636	5636	40	1	9606
SSFYPDGGDQETAK	Unmodified	1500.6369	0.63686721	725	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1.5	0.5	1	1				16.124	16.124	2	0.0021969	7862	DP1145_6	109.39	83.27			167110000	2400	725	2237	3922;3923	5637;5638;5639;5640	5638		4	9606
SSGEIVYCGQVFEK	Unmodified	1601.7396	0.73955814	418	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	5	0					1	18.148	18.148	2	1.3163E-58	11757	DP1145_10	185.3	141.34			74350000	2401	418	2238	3924	5641;5642	5642		2	9606
SSGLTAVWVAR	Unmodified	1145.6193	0.61930707	315	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	0	1					18.355	18.355	2	0.0013993	11995	DP1145_6	119.68	42.489			29742000	2402	315	2239	3925	5643	5643		1	9606
SSGPTSLFAVTVAPPGAR	Unmodified	1713.905	0.90498399	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1.5	0.5	1	1				19.951	19.951	2	1.0354E-49	16336	DP1145_7	234.49	171.17			353570000	2403	412	2240	3926;3927	5644;5645;5646	5645		3	9606
SSGPYGGGGQYFAK	Unmodified	1374.6204	0.62042929	143	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	4	0				1		16.642	16.642	2	0.0042024	9641	DP1145_9	120.27	86.086			0	2404	143	2241	3928	5647	5647		1	9606
SSGPYGGGGQYFAKPR	Unmodified	1627.7743	0.77430417	143	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	4	0				2		15.778	15.778	2	1.5397E-194	8353	DP1145_9	244	177.34			128080000	2405	143	2242	3929;3930	5648;5649	5649		2	9606
SSMSGLHLVK	Oxidation (M)	1073.5539	0.55392962	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					15.192	15.192	2	0.031181	5565	DP1145_6	69.598	23.918			15742000	2406	438	2243	3931	5650;5651	5650	411	2	9606
SSMSGLHLVK	Unmodified	1057.559	0.559015	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					15.631	15.631	2	2.6389E-12	7191	DP1145_6	154.12	118.82			275820000	2407	438	2243	3932	5652;5653	5653		2	9606
SSQPQAGSQGPQTFR	Unmodified	1574.7437	0.74373232	447	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	3	0			1			14.812	14.812	2	0.011682	7683	DP1145_8	82.505	44.788			3721200	2408	447	2244	3933	5654	5654		1	9606
SSSIIGSSSASHTSQATSGANSK	Unmodified	2151.004	0.0039823436	318	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	2	0		1				13.83	13.83	3	1.15E-22	6922	DP1145_7	155.53	113.41			23947000	2409	318	2245	3934	5655	5655		1	9606
SSSSSSSSSCSSSVAPSQHLQPMAK	Oxidation (M)	2526.0962	0.096244524	140	P09016	HOXD4	Homeobox protein Hox-D4	yes	yes	0	1	0	4	0				1		14.032	14.032	3	0.0044437	5616	DP1145_9	54.728	43.183			3986600	2410	140	2246	3935	5656;5657	5656	136	2	9606
SSTATHPPGPAVQLNK	Unmodified	1603.8318	0.83181904	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.78	1.31	2	2	2	2	1	14.616	14.616	2;3	1.1759E-169	5731	DP1145_6	281.17	226.09			56925000000	2411	474	2247	3936;3937;3938;3939;3940;3941;3942;3943;3944	5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684;5685;5686;5687;5688	5668		31	9606
SSTATHPPGPAVQLNKTPSSSK	Unmodified	2191.1233	0.12330962	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1		1		1		14.256	14.256	3;4	0.0019025	7619	DP1145_7	84.371	69.106			25192000	2412	474	2248	3945;3946	5689;5690;5691	5689		3	9606
SSTPLPTISSSAENTR	Unmodified	1646.8111	0.81114318	269	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	3	0			1			16.779	16.779	2	0.019119	10859	DP1145_8	76.357	63.924			40330000	2413	269	2249	3947	5692	5692		1	9606
STAGDTHLGGEDFDNR	Unmodified	1690.7183	0.71830543	154	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	yes	no	0	0	0	3.33	0.471			2	1		15.528	15.528	2;3	0.00011526	8789	DP1145_8	127.56	111.31			493010000	2414	154	2250	3948;3949;3950	5693;5694;5695;5696	5693		2	9606
STDLTVGKIYAAMMIMEYYR	3 Oxidation (M)	2403.116	0.11604067	36	O00555	CACNA1A	Voltage-dependent P/Q-type calcium channel subunit alpha-1A	yes	yes	0	3	1	3	0			1			18.423	18.423	3	0.026114	13105	DP1145_8	47.082	23.508			14966000	2415	36	2251	3951	5697	5697	23;24;25	1	9606
STELLIR	Unmodified	830.48617	0.48616764	530	Q5TEC6;Q6NXT2;Q71DI3;Q16695;P84243;P68431	HIST2H3PS2;H3F3C;HIST2H3A;HIST3H3;H3F3A;HIST1H3A	Histone H3;Histone H3.3C;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1	yes	no	0	0	0	3.67	1.89	1				2	16.675	16.675	1;2	1.0944E-139	9547	DP1145_10	235.96	93.433			2471500000	2416	530	2252	3952;3953;3954	5698;5699;5700;5701;5702	5698		5	9606
STGEAFVQFASQEIAEK	Unmodified	1840.8843	0.88430813	232	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	yes	no	0	0	0	3	0			1			20.725	20.725	2	0.0023776	16854	DP1145_8	114.87	90.358			383800000	2417	232	2253	3955	5703	5703		1	9606
STLINSLFLTDLYPER	Unmodified	1880.9884	0.98837927	481	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	4	0				1		23.062	23.062	2	8.8906E-47	19168	DP1145_9	178.32	132.56			5107900	2418	481	2254	3956	5704;5705	5704		2	9606
STLIQCLIR	Unmodified	1102.6169	0.61686423	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					19.655	19.655	2	0.00024545	13492	DP1145_6	113.5	82.196			18163000	2419	476	2255	3957	5706	5706		0	9606
STLVGHDTFTK	Unmodified	1204.6088	0.60880197	23	CON__Streptavidin			yes	yes	0	0	0	3.4	1.58	3	2	2	2	6	16.892	16.892	2;3	1.2203E-131	9175	DP1145_10	228.2	175.11		+	139860000000	2420	23	2256	3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972	5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753	5722		47	
STNGDTFLGGEDFDQALLR	Unmodified	2054.9545	0.95451296	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			21.325	21.325	2	0.029374	17659	DP1145_8	90.853	57.658			37703000	2421	254	2257	3973	5754	5754		0	9606
STVLTPMFVETQASQGTLQTR	Oxidation (M)	2310.1526	0.15256084	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					19.399	19.399	2	0.021487	13076	DP1145_6	80.632	45.734			0	2422	401	2258	3974	5755	5755	360	1	9606
SVAHGQAPEMPLVK	Oxidation (M)	1478.7551	0.75514863	508	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	1	0	3.5	0.5			1	1		14.131	14.131	3	0.0030022	5777	DP1145_9	96.135	72.307			216690000	2423	508	2259	3975;3976	5756;5757	5757	465	1	9606
SVELEEALPVTTAEGMAK	Acetyl (Protein N-term);Oxidation (M)	1931.9398	0.93977409	606	Q92522	H1FX	Histone H1x	yes	yes	1	1	0	4	0				1		21.365	21.365	2	0.0060999	16733	DP1145_9	91.032	26.154			0	2424	606	2260	3977	5758	5758	523	1	9606
SVGFIGAGQLAYALAR	Acetyl (Protein N-term)	1634.878	0.87804096	621	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	1	0	0	4	0				1		24.183	24.183	2	1.9382E-07	20841	DP1145_9	130.56	107.88			2291100	2425	621	2261	3978	5759	5759		1	9606
SVHCQAGDTVGEGDLLVELE	Unmodified	2126.979	0.97901315	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			20.626	20.626	2	1.6721999999999999E-112	16598	DP1145_8	193.51	135			89375000	2426	115	2262	3979	5760	5760		1	9606
SVHSSVPLLNSK	Unmodified	1266.6932	0.6932003	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.75	0.829	2	1	1			15.514	15.514	2;3	2.3681E-100	6890	DP1145_6	238.01	182.93			549660000	2427	438	2263	3980;3981;3982;3983	5761;5762;5763;5764;5765	5762		4	9606
SVHSSVPLLNSKDPIDR	Unmodified	1862.985	0.98502522	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.33	0.471	2	1				16.442	16.442	3;4	0.0014843	8314	DP1145_6	133.9	133.9			1429800000	2428	438	2264	3984;3985;3986	5766;5767;5768;5769;5770;5771	5770		6	9606
SVNELIYK	Unmodified	964.52295	0.52294707	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		16.723	16.723	2	0.0022872	9784	DP1145_9	110.31	41.134			472730000	2429	191	2265	3987	5772	5772		1	9606
SVPAFIDISEEDQAAELR	Acetyl (Protein N-term)	2030.9797	0.97966507	552	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	1	0	0	4	0				1		23.555	23.555	2	0	19908	DP1145_9	301.38	219.75			6092100	2430	552	2266	3988	5773;5774	5773		2	9606
SVPVTKPVPVTKPITVTK	Unmodified	1890.1554	0.15538502	632	Q96KM6	ZNF512B	Zinc finger protein 512B	yes	yes	0	0	2	2	0		1				15.262	15.262	4	0.041862	8909	DP1145_7	67.299	50.374			27811000	2431	632	2267	3989	5775	5775		0	9606
SVQTTLQTDEVK	Unmodified	1347.6882	0.6881745	88	O94905;O75477	ERLIN2;ERLIN1	Erlin-2;Erlin-1	yes	no	0	0	0	4	0				1		15.878	15.878	2	1.6776E-07	8489	DP1145_9	129.88	67.295			89927000	2432	88	2268	3990	5776	5776		1	9606
SVTCTYSPALNK	Unmodified	1339.6442	0.6442012	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			15.756	15.756	2	2.4817E-05	9075	DP1145_8	125.71	89.331			168570000	2433	110	2269	3991	5777	5777		1	9606
SVTEQGAELSNEER	Unmodified	1547.7063	0.70634376	386	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	5	0					1	15.304	15.304	2	0.0054684	7497	DP1145_10	95.477	41.91			67673000	2434	386	2270	3992	5778	5778		1	9606
SVTNEDVTQEELGGAK	Unmodified	1675.7901	0.79007339	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3.25	1.48	1		1	1	1	16.362	16.362	2	1.4116E-46	8397	DP1145_6	176.87	152.02			1957399999.9999998	2435	116	2271	3993;3994;3995;3996	5779;5780;5781;5782;5783;5784	5781		6	9606
SVVALHNLINNK	Unmodified	1320.7514	0.75138388	304	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	4	0				1		16.823	16.823	2	7.9816E-08	9973	DP1145_9	133.99	72.302			17835000	2436	304	2272	3997	5785	5785		1	9606
SVVEFLQGYIGVPHGGFPEPFR	Unmodified	2431.2325	0.23246614	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.707	1	2	1			22.615	22.615	2;3	1.5966999999999999E-21	20299	DP1145_7	176.56	136.53			161480000	2437	158	2273	3998;3999;4000;4001	5786;5787;5788;5789;5790	5789		5	9606
SWLFGINK	Acetyl (Protein N-term)	1005.5284	0.5283668	718	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	1	0	0	3	0			1			23.942	23.942	2	0.00044227	21345	DP1145_8	110.63	49.951			15008000	2438	718	2274	4002	5791	5791		1	9606
SWLSYSYQSR	Unmodified	1275.5884	0.58840088	494	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	2	0		1				18.797	18.797	2	0.014088	14614	DP1145_7	85.67	54.596			13036000	2439	494	2275	4003	5792	5792		0	9606
SYCAEIAHNVSSK	Unmodified	1464.6667	0.66672755	381	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	5	0					2	15.304	15.304	2;3	0.00013389	7346	DP1145_10	117.95	97.852			170420000	2440	381	2276	4004;4005	5793;5794;5795;5796	5793		4	9606
SYELPDGQVITIGNER	Unmodified	1789.8846	0.88464248	337;389	P60709;P63267;P68133;P68032;P62736;Q6S8J3;A5A3E0;Q9BYX7;Q562R1;P63261	ACTB;ACTG2;ACTA1;ACTC1;ACTA2;POTEE;POTEF;POTEKP;ACTBL2;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	5	0					1	20.133	20.133	2	0.036605	14955	DP1145_10	69.456	20.176			33500000	2441	337;389	2277	4006	5797	5797		1	9606
SYLNMDAIMEAIK	Oxidation (M)	1513.7157	0.71565158	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.195	20.195	2	0.0088743	16055	DP1145_8	83.045	44.295			22839000	2442	115	2278	4007	5798	5798	93;94	1	9606
SYLNMDAIMEAIK	2 Oxidation (M)	1529.7106	0.7105662	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	0	3	0			1			18.782	18.782	2	0.010344	13866	DP1145_8	90.685	25.528			0	2443	115	2278	4008	5799	5799	93;94	1	9606
SYLNMDAIMEAIKK	2 Oxidation (M)	1657.8055	0.80552922	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	2	1	2.25	0.829	1	1	2			17.65	17.65	2;3	1.6937999999999998E-19	12067	DP1145_8	149.49	100.75			654250000	2444	115	2279	4009;4010;4011;4012	5800;5801;5802;5803;5804;5805	5805	93;94	4	9606
SYLNMDAIMEAIKK	Oxidation (M)	1641.8106	0.8106146	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	1	3	0			3			19.284	19.284	2;3	4.5741E-05	14940	DP1145_8	123.01	84.704			126260000	2445	115	2279	4013;4014;4015	5806;5807;5808	5808	93;94	3	9606
SYLYQILQGIVFCHSR	Unmodified	1983.0037	0.003652175	122	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	4	0				1		23.176	23.176	3	0.015627	19385	DP1145_9	67.646	47.598			2892300	2446	122	2280	4016	5809;5810	5809		2	9606
TAAENDFVTLKK	Unmodified	1335.7034	0.70343063	18	P35908;CON__P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	1	3	0			1			15.71	15.71	3	0.02036	9020	DP1145_8	75.788	39.485		+	0	2447	18	2281	4017	5811	5811		1	9606
TAAFLLPILSQIYSDGPGEALR	Unmodified	2331.2474	0.2474475	39	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	3	0			1			24.649	24.649	2	9.345E-99	22280	DP1145_8	202.92	166.15			3046400	2448	39	2282	4018	5812;5813;5814	5812		3	9606
TAANLVVETGQDGVQIR	Unmodified	1769.9272	0.92717599	529	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	3	0			1			18.323	18.323	2	1.0347000000000001E-220	13253	DP1145_8	316.42	210.96			51032000	2449	529	2283	4019	5815;5816	5815		2	9606
TAEEENPEHVEIQK	Unmodified	1651.7689	0.76894402	37	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	2.75	0.829		2	1	1		14.674	14.674	2;3	1.37E-104	8174	DP1145_7	209.67	114.19			205990000	2450	37	2284	4020;4021;4022;4023	5817;5818;5819;5820;5821;5822;5823	5820		6	9606
TAGTLFGEGFR	Unmodified	1154.572	0.57202253	718	Q9NVI7;Q5T9A4	ATAD3A;ATAD3B	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B	yes	no	0	0	0	3	0			1			18.935	18.935	2	2.9327999999999998E-52	14150	DP1145_8	189.38	150.57			128310000	2451	718	2285	4024	5824;5825	5825		2	9606
TAIHEVMEQQTISIAK	Oxidation (M)	1813.9244	0.9243988	236	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	1	0	2	0		1				16.09	16.09	2	0.0045697	10403	DP1145_7	88.021	61.362			18026000	2452	236	2286	4025	5826	5826	223	1	9606
TALIHDGLAR	Unmodified	1065.5931	0.59309232	213	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	5	0					1	15.252	15.252	2	0.0023019	7293	DP1145_10	104.2	67.816			44096000	2453	213	2287	4026	5827	5827		1	9606
TAQIMFQAYGDK	Oxidation (M)	1387.6442	0.6442012	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	1					17.253	17.253	2	1.5992E-08	9841	DP1145_6	136.5	106.83			274240000	2454	438	2288	4027	5828;5829	5828	412	2	9606
TAQIMFQAYGDK	Unmodified	1371.6493	0.64928657	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					18.255	18.255	2	0.013696	11463	DP1145_6	83	62.053			399130000	2455	438	2288	4028	5830	5830		1	9606
TASALFAGFR	Unmodified	1039.5451	0.5450795	593	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1	0	1					19.355	19.355	2	1.471E-13	12924	DP1145_6	128.61	108.13			7151300	2456	593	2289	4029	5831	5831		0	9606
TASVLSKDDVAPESGDTTVKK	Unmodified	2147.0958	0.095757464	85	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	2	3	0			1			14.881	14.881	4	0.042543	7652	DP1145_8	53.768	24.898			27235000	2457	85	2290	4030	5832	5832		0	9606
TATESFASDPILYRPVAVALDTK	Unmodified	2464.285	0.28495522	171	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	3	0			1			20.536	20.536	3	7.5241E-05	16415	DP1145_8	121.77	103.18			32695000	2458	171	2291	4031	5833	5833		0	9606
TAVCDIPPR	Unmodified	1027.5121	0.51206481	395;131;460	P07437;P68371;P04350;Q3ZCM7;A6NNZ2;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB4A;TUBB8;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	3.33	1.25	1		2	2	1	15.444	15.444	2	1.4363E-16	7745	DP1145_8	158.07	95.416			1224500000	2459	131;395;460	2292	4032;4033;4034;4035;4036;4037	5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847	5841		14	9606
TAVSGIRPENLK	Unmodified	1283.7197	0.7197494	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	1	3	0			2			15.078	15.078	2;3	8.6679E-22	8086	DP1145_8	155.26	108.44			410410000	2460	679	2293	4038;4039	5848;5849	5848		2	9606
TAVVVGTITDDVR	Unmodified	1344.7249	0.72489436	424	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	3.33	1.7	1			1	1	17.685	17.685	2	5.634E-40	10769	DP1145_6	175.49	105.89			1102000000	2461	424	2294	4040;4041;4042	5850;5851;5852	5851		3	9606
TAYSGGAEDLER	Unmodified	1267.5681	0.56805936	772	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	4	0				1		15.577	15.577	2	0.0022211	7954	DP1145_9	103.34	65.255			86181000	2462	772	2295	4043	5853;5854	5853		2	9606
TCPVQLWVDSTPPPGTR	Unmodified	1909.9356	0.93563219	110	P04637	TP53	Cellular tumor antigen p53	yes	yes	0	0	0	3	0			1			19.724	19.724	2	1.9724E-60	15372	DP1145_8	185.2	152.2			106780000	2463	110	2296	4044	5855;5856;5857	5856		3	9606
TCTTVAFTQVNSEDKGALAK	Unmodified	2140.047	0.047033132	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		16.723	16.723	3	4.1054E-09	9675	DP1145_9	137.32	106.68			400890000	2464	366	2297	4045	5858	5858		1	9606
TCVFEKENDPSVMR	Oxidation (M)	1726.7655	0.76545532	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					15.228	15.228	3	0.0056528	6568	DP1145_6	101.72	75.992			252810000	2465	438	2298	4046	5859	5859	413	1	9606
TCVFEKENDPSVMR	Unmodified	1710.7705	0.7705407	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.137	16.137	2;3	4.8045E-44	7888	DP1145_6	174.57	126.6			187590000	2466	438	2298	4047;4048	5860;5861;5862	5862		3	9606
TDAAVSFAK	Acetyl (Protein N-term)	950.47091	0.4709115	114	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	3	1.41	1			2		18.367	18.367	1;2	2.0698E-20	12441	DP1145_9	144.09	69.834			157560000	2467	114	2299	4049;4050;4051	5863;5864;5865	5865		2	9606
TDCDIEDDRLAAMFR	Oxidation (M)	1842.7876	0.78764732	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					18.255	18.255	3	0.033219	11313	DP1145_6	72.705	54.109			159520000	2468	438	2300	4052	5866	5866	414	1	9606
TDCDIEDDRLAAMFR	Unmodified	1826.7927	0.7927327	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	1					19.655	19.655	3	0.01499	13804	DP1145_6	84.169	55.536			422560000	2469	438	2300	4053	5867;5868	5868		2	9606
TDCNHIFLNFVPTVIMDPSK	Oxidation (M)	2363.129	0.12898862	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	1	0	3					21.296	21.296	2;3	3.7689E-133	15820	DP1145_6	223.76	199.88			90913000	2470	438	2301	4054;4055;4056	5869;5870;5871;5872;5873	5869	415	5	9606
TDCNHIFLNFVPTVIMDPSK	Unmodified	2347.1341	0.134074	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					22.124	22.124	3	0.00013843	17021	DP1145_6	116.09	85.053			28717000	2471	438	2301	4057	5874;5875	5874		2	9606
TDCNHIFLNFVPTVIMDPSKIEESVR	Oxidation (M)	3076.4998	0.49979215	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	1					21.386	21.386	4	0.00084041	16111	DP1145_6	61.141	43.861			15683000	2472	438	2302	4058	5876;5877	5877	415	2	9606
TDFGIFR	Unmodified	854.42865	0.42865276	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0.816		1	1	1		19.216	19.216	2	0.00025414	15275	DP1145_7	124.32	97.007			3338199999.9999995	2473	700	2303	4059;4060;4061	5878;5879;5880;5881	5878		4	9606
TDITYPAGFMDVISIDK	Unmodified	1884.9179	0.91791644	367	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		22.337	22.337	2	0.00022953	18161	DP1145_9	139.89	116.13			8642700	2474	367	2304	4062	5882;5883	5882		2	9606
TDKSILVSPTGPSR	Unmodified	1456.7886	0.78855725	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.6	1.36		2		1	2	15.493	15.493	2;3	3.4751E-45	7661	DP1145_10	156.2	69.459			327270000	2475	474	2305	4063;4064;4065;4066;4067	5884;5885;5886;5887;5888;5889;5890	5885		5	9606
TDTLEDLFPTTK	Unmodified	1379.682	0.68202649	165	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	2	0		1				20.465	20.465	2	0.0087116	17015	DP1145_7	90.149	37.57			8243600	2476	165	2306	4068	5891	5891		1	9606
TDYNASVSVPDSSGPER	Unmodified	1779.7911	0.79113602	349	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	3	0			1			16.64	16.64	2	0.017669	10684	DP1145_8	77.644	51.943			265450000	2477	349	2307	4069	5892	5892		1	9606
TEALSVIELLLK	Unmodified	1327.7963	0.79626839	532	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	2	0		1				23.692	23.692	2	0.021222	21798	DP1145_7	85.355	46.102			4470100	2478	532	2308	4070	5893	5893		0	9606
TEDPDLPAFYFDPLINPISHR	Unmodified	2456.2012	0.20122559	542	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					22.575	22.575	3	1.9153E-41	17784	DP1145_6	166.47	146.89			5947400	2479	542	2309	4071	5894	5894		1	9606
TEELEEESFPER	Unmodified	1493.6522	0.65218292	767	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1.5	0.5	1	1				17.428	17.428	2	1.4798E-07	12451	DP1145_7	137.46	93.501			0	2480	767	2310	4072;4073	5895;5896	5896		2	9606
TEIIILATR	Unmodified	1028.623	0.62299547	205	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	2.5	1.5	1			1		18.623	18.623	2	7.4764E-47	11848	DP1145_6	184.49	110.19			383550000	2481	205	2311	4074;4075	5897;5898;5899	5897		3	9606
TEILPPFFK	Unmodified	1090.6063	0.60628277	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				20.628	20.628	2	0.01084	17358	DP1145_7	93.195	43.754			14823000	2482	80	2312	4076	5900	5900		1	9606
TEIMSPLYQDEAPK	Oxidation (M)	1636.7654	0.76543854	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	1	0	2	0		1				17.399	17.399	2	0.0033742	12523	DP1145_7	94.767	50.81			52603000	2483	575	2313	4077	5901	5901	506	1	9606
TEQAISFAK	Acetyl (Protein N-term)	1035.5237	0.52367535	162	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	1	0	1					18.955	18.955	2	0.023131	12398	DP1145_6	60.118	8.3311			9638900	2484	162	2314	4078	5902	5902		0	9606
TETYPQGQPVK	Unmodified	1246.6194	0.61936665	580	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	5	0					1	15.114	15.114	2	0.009463	6981	DP1145_10	91.069	34.637			1977099999.9999998	2485	580	2315	4079	5903	5903		1	9606
TFAPEEISAMVLTK	Unmodified	1535.7905	0.79053108	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			21.007	21.007	2	0.0055355	16967	DP1145_8	94.82	36.308			16990000	2486	153	2316	4080	5904	5904		1	9606
TFEDFVR	Unmodified	912.43413	0.43413207	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.33	0.471	2	1				18.236	18.236	1;2	2.2256000000000001E-119	11275	DP1145_6	226.1	168.64			1021099999.9999999	2487	438	2317	4081;4082;4083	5905;5906;5907;5908	5905		4	9606
TFEVTPIR	Unmodified	961.52328	0.52328142	477	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	0	1					17.253	17.253	2	0.0091944	9557	DP1145_6	100.19	64.308			79956000	2488	477	2318	4084	5909	5909		1	9606
TFLVGER	Unmodified	820.4443	0.44430282	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			1			16.64	16.64	2	0.00036525	10401	DP1145_8	119.57	60.905			67272000	2489	218	2319	4085	5910;5911	5910		2	9606
TFQVLGNLYSEGDCTYLK	Unmodified	2106.9932	0.99320665	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		20.986	20.986	2	4.8914E-50	17139	DP1145_8	180.3	133.07			472310000	2490	639	2320	4086;4087;4088;4089	5912;5913;5914;5915;5916	5914		5	9606
TFSFAIPLIER	Unmodified	1292.7129	0.71287311	652	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	1.5	0.5	1	1				21.941	21.941	2	0.012964	19262	DP1145_7	86.882	48.606			74719000	2491	652	2321	4090;4091	5917;5918;5919	5918		2	9606
TFSSIPVSR	Unmodified	992.5291	0.52909508	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.4	16.4	2	0.020977	8269	DP1145_6	88.819	32.272			10909000	2492	466	2322	4092	5920	5920		1	9606
TFTDCFNCLPIAAIVDEK	Unmodified	2112.986	0.98601278	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	2.6	1.02	1	1	2	1		22.697	22.697	2;3	2.3456E-175	18516	DP1145_9	302.85	267.96			554100000	2493	251;352	2323	4093;4094;4095;4096;4097	5921;5922;5923;5924;5925;5926;5927;5928;5929;5930;5931	5931		11	9606
TFYNQAIMSSK	Oxidation (M)	1304.6071	0.60708741	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2	1	1		1			16.37	16.37	2	0.0026134	10057	DP1145_8	112.85	112.85			1381900000	2494	700	2324	4098;4099	5932;5933;5934	5933	589	3	9606
TFYNQAIMSSK	Unmodified	1288.6122	0.61217279	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2	1	1		1			17.474	17.474	2	0.0068404	11888	DP1145_8	122.94	67.569			0	2495	700	2324	4100;4101	5935;5936	5936		2	9606
TGAFALPILNALLETPQR	Unmodified	1924.0782	0.078197327	683	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	3	0			2			24.446	24.446	2;3	2.1273E-18	22027	DP1145_8	173.06	138.16			7092800	2496	683	2325	4102;4103	5937;5938;5939	5938		3	9606
TGAIVDVPVGEELLGR	Unmodified	1623.8832	0.88318591	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.524	20.524	2	6.6555E-35	16400	DP1145_8	196.02	128.82			253140000	2497	215	2326	4104	5940;5941	5940		2	9606
TGISDVFAK	Unmodified	936.49165	0.49164694	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	0		2				18.099	18.099	1;2	9.2977E-44	13446	DP1145_7	168.27	79.123			381720000	2498	194	2327	4105;4106	5942;5943	5943		1	9606
TGLAVTVGQAK	Unmodified	1043.5975	0.597509	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				15.74	15.74	2	0.021624	9918	DP1145_7	78.098	48.928			113600000	2499	451	2328	4107	5944	5944		1	9606
TGLVLTDIQR	Unmodified	1114.6346	0.63462279	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	2	0		1				18.099	18.099	2	0.007837	13623	DP1145_7	112.11	45.54			149320000	2500	656	2329	4108	5945	5945		1	9606
TGNFISTSTSLPR	Unmodified	1379.7045	0.70449327	784	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	yes	yes	0	0	0	3	0			1			17.723	17.723	2	1.2211E-17	12241	DP1145_8	154.15	101.42			40520000	2501	784	2330	4109	5946	5946		1	9606
TGNIPALVR	Unmodified	939.55016	0.55016488	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				16.738	16.738	2	1.8963E-05	11408	DP1145_7	118.74	74.626			87728000	2502	322	2331	4110	5947	5947		0	9606
TGSSSLPGRPSVIPDHSKK	Unmodified	1949.033	0.033038048	735	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	2	2	0		1				14.283	14.283	4	0.03034	7517	DP1145_7	77.027	55.214			9246700	2503	735	2332	4111	5948	5948		0	9606
TGTAEMSSILEER	Oxidation (M)	1438.661	0.66097347	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	1	0	5	0					1	16.227	16.227	2	0.0025867	8828	DP1145_10	96.64	68.776			54844000	2504	215	2333	4112	5949	5949	211	1	9606
TGTAEMSSILEER	Unmodified	1422.6661	0.66605885	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	1	0	1					18.455	18.455	2	0.020943	11587	DP1145_6	87.568	35.321			5275300	2505	215	2333	4113	5950	5950		0	9606
TGTAYTFFTPNNIK	Unmodified	1573.7777	0.77765821	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			19.441	19.441	2	5.2544E-32	14862	DP1145_8	215.72	150.56			0	2506	186	2334	4114	5951	5951		1	9606
TGTTGQSGAESGTTEPSAR	Unmodified	1793.8028	0.80276334	559	Q7Z5P9	MUC19	Mucin-19	yes	yes	0	0	0	4	0				1		19.623	19.623	2	0.0043544	14293	DP1145_9	108.23	63.619			1774999999.9999998	2507	559	2335	4115	5952	5952		1	9606
TGVHHYSGNNIELGTACGK	Unmodified	2013.9327	0.93267208	378	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					3	14.701	14.701	2;3;4	0	6472	DP1145_10	262.24	216.88			446130000	2508	378	2336	4116;4117;4118	5953;5954;5955	5955		3	9606
TGVVPQLVK	Unmodified	939.57532	0.57531699	308	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	3	0			1			16.923	16.923	2	0.0095417	10982	DP1145_8	101.64	62.837			108610000	2509	308	2337	4119	5956	5956		0	9606
THINIVVIGHVDSGK	Unmodified	1587.8733	0.87328993	391	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	yes	no	0	0	0	3.33	0.471			2	1		16.443	16.443	2;3	0.0032961	10351	DP1145_8	108.06	95.721			571910000	2510	391	2338	4120;4121;4122	5957;5958;5959;5960	5958		4	9606
THNLEPYFESFINNLR	Unmodified	1992.9694	0.96937516	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	3	1.29	1	1	2	1	1	21.926	21.926	2;3	6.020999999999999E-170	18446	DP1145_8	195.5	176.82		+	170490000	2511	11	2339	4123;4124;4125;4126;4127;4128	5961;5962;5963;5964;5965;5966;5967;5968;5969	5965		8	9606
THSDQFLVAFK	Unmodified	1291.6561	0.65608651	249	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	4	0				1		17.923	17.923	3	0.026147	11846	DP1145_9	49.466	22.759			120310000	2512	249	2340	4129	5970	5970		1	9606
TIAECLADELINAAK	Unmodified	1630.8236	0.82362212	282	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	5	0					1	22.781	22.781	2	5.007E-17	18523	DP1145_10	182.92	145.22			52800000	2513	282	2341	4130	5971	5971		1	9606
TICSHVQNMIK	Oxidation (M)	1345.6482	0.64824072	234	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	1	0	5	0					1	14.413	14.413	3	0.0093755	6035	DP1145_10	74.841	43.244			29748000	2514	234	2342	4131	5972	5972	221	1	9606
TIGGGDDSFNTFFSETGAGK	Unmodified	2006.8858	0.88576469	393;550	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1B;TUBA1A;TUBA3E	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	2.5	1.12	1	1	1	1		20.734	20.734	2	1.091E-152	16807	DP1145_8	229.48	208.81			1660199999.9999998	2515	393;550	2343	4132;4133;4134;4135	5973;5974;5975;5976;5977;5978;5979;5980;5981	5976		9	9606
TIIFVETK	Unmodified	949.54843	0.54843354	612	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3.5	0.5			1	1		17.622	17.622	2	0.0093407	12212	DP1145_8	120.46	80.794			4181100	2516	612	2344	4136;4137	5982;5983	5982		2	9606
TIQFVDWCPTGFK	Unmodified	1597.7599	0.75989966	550	Q71U36;P0DPH8;P0DPH7;Q6PEY2	TUBA1A;TUBA3E	Tubulin alpha-1A chain;Tubulin alpha-3E chain	no	no	0	0	0	3	0.816		1	1	1		21.121	21.121	2	0.0020912	17427	DP1145_8	124.1	99.638			536420000	2517	550	2345	4138;4139;4140	5984;5985;5986	5985		2	9606
TIQVENSHLILTGAGALNK	Unmodified	1978.0847	0.084739268	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.5	0.5	1	1				18.227	18.227	3	0.0031332	11462	DP1145_6	102.89	87.64			609560000	2518	438	2346	4141;4142	5987;5988	5987		2	9606
TITLEVEPSDTIENVK	Unmodified	1786.92	0.92002493	385	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	2.33	1.25	1	1		1		19.025	19.025	2	4.7347000000000006E-279	13323	DP1145_9	274.53	206.58			1060099999.9999999	2519	385	2347	4143;4144;4145	5989;5990;5991;5992;5993	5993		5	9606
TKAPDDLVAPVVK	Unmodified	1351.7711	0.77111627	53	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	1	3	0			1			16.116	16.116	3	0.038401	9761	DP1145_8	75.911	50.02			28643000	2520	53	2348	4146	5994	5994		1	9606
TKDHTLVQTIAR	Unmodified	1381.7678	0.76776223	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.78	1.31	2	2	2	2	1	14.567	14.567	2;3	6.4684E-210	5689	DP1145_6	244.73	202.3			6215499999.999999	2521	474	2349	4147;4148;4149;4150;4151;4152;4153;4154;4155	5995;5996;5997;5998;5999;6000;6001;6002;6003;6004;6005;6006;6007;6008;6009;6010	5996		15	9606
TKEEVNEWFTK	Unmodified	1409.6827	0.68269519	752	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	4	0				1		16.823	16.823	3	3.097E-05	10328	DP1145_9	119.03	80.224			41924000	2522	752	2350	4156	6011	6011		1	9606
TKPIVKPQTSPEYGQGINPISR	Unmodified	2409.3016	0.30160833	100	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	2	3.5	0.5			1	1		16.094	16.094	3	3.115E-41	9643	DP1145_8	169.77	150.28			98878000	2523	100	2351	4157;4158	6012;6013;6014	6012		2	9606
TKVGDGDLSAEEIPENEVSLR	Unmodified	2257.1074	0.10738478	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2	0		1				18.099	18.099	2	0.029854	13678	DP1145_7	130.39	88.816			97217000	2524	474	2352	4159	6015;6016	6015		2	9606
TKVGDGDLSAEEIPENEVSLRR	Unmodified	2413.2085	0.20849581	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	2	2.67	0.943		2		1		17.236	17.236	3;4	0.0013681	12110	DP1145_7	102.07	75.707			758380000	2525	474	2353	4160;4161;4162	6017;6018;6019	6017		3	9606
TLAFLIPAVELIVK	Unmodified	1525.9484	0.94835235	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2.5	0.5		1	1			24.288	24.288	2	0.0053916	22668	DP1145_7	96.229	82.42			6197000	2526	719	2354	4163;4164	6020;6021;6022;6023	6020		4	9606
TLATDILMGVLK	Oxidation (M)	1289.7265	0.72647426	52	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	1	0	1.5	0.5	1	1				22.49	22.49	2	0.0053186	17650	DP1145_6	90.108	74.848			38712000	2527	52	2355	4165;4166	6024;6025	6024	44	2	9606
TLDPDPAIR	Unmodified	996.52401	0.52400971	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	0		1				16.122	16.122	2	0.002981	10372	DP1145_7	107.9	67.627			52632000	2528	322	2356	4167	6026	6026		1	9606
TLEDPDLNVR	Unmodified	1170.5881	0.58806652	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	2	0		1				16.999	16.999	2	0.0053258	11741	DP1145_7	95.815	58.266			72624000	2529	566	2357	4168	6027	6027		1	9606
TLEEDVDDRAPSKK	Unmodified	1601.7897	0.78967946	459	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	2	4	0				1		14.375	14.375	3	0.012179	6059	DP1145_9	86.699	47.9			11984000	2530	459	2358	4169	6028	6028		0	9606
TLFVLNVPPYCTEESLSR	Unmodified	2124.0561	0.056141256	773	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	4	0				1		21.459	21.459	2	0.028468	16869	DP1145_9	110.44	62.523			0	2531	773	2359	4170	6029	6029		1	9606
TLLPHDPTADVFVTPAEEKPIEIQWVKPEPK	Unmodified	3523.8603	0.86027221	595	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	2	4	0				1		19.911	19.911	5	0.00012804	14738	DP1145_9	52.674	32.636			31219000	2532	595	2360	4171	6030	6030		1	9606
TLLWTELFR	Unmodified	1177.6495	0.64954457	29	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	0	5	0					1	22.823	22.823	2	0.0060886	18589	DP1145_10	116.73	74.438			9161700	2533	29	2361	4172	6031	6031		1	9606
TLMNLGGLAVAR	Oxidation (M)	1230.6754	0.67544174	253	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	5	0					1	18.148	18.148	2	0.0012619	11832	DP1145_10	109.29	83.669			63719000	2534	253	2362	4173	6032	6032	235	1	9606
TLQEEVMEAMGIK	2 Oxidation (M)	1509.7055	0.70548082	617	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	2	0	5	0					1	18.326	18.326	2	0.032679	12084	DP1145_10	72.096	37.293			0	2535	617	2363	4174	6033	6033	528;529	1	9606
TLRDPSLPLLELQDIMTSVSGR	Oxidation (M)	2456.2945	0.29447405	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1.33	0.471	2	1				21.5	21.5	2;3	9.7438E-31	16057	DP1145_6	159.53	122.25			206160000	2536	438	2364	4175;4176;4177	6034;6035;6036;6037;6038;6039;6040	6034	384	7	9606
TLRDPSLPLLELQDIMTSVSGR	Unmodified	2440.2996	0.29955942	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1.5	0.5	1	1				23.558	23.558	3	4.0981000000000004E-158	19146	DP1145_6	224.36	191.85			21993000	2537	438	2364	4178;4179	6041;6042;6043;6044;6045;6046	6042		6	9606
TLSDDLDEAAKEFQEK	Unmodified	1837.8582	0.85815295	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	1	0	1					20.355	20.355	3	0.022918	14535	DP1145_6	106.76	75.714			31436000	2538	681	2365	4180	6047	6047		0	9606
TLSDYNIQK	Unmodified	1080.5451	0.54513908	385	P62979;A0A2R8Y422;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1	0	1					15.933	15.933	2	0.00053044	7614	DP1145_6	134.81	87.236			497420000	2539	385	2366	4181	6048;6049	6048		2	9606
TLSYLLPAIVHINHQPFLER	Unmodified	2360.3005	0.30048612	186	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	3	0			1			20.626	20.626	3	0.0052792	16663	DP1145_8	108.97	81.008			178180000	2540	186	2367	4182	6050;6051;6052;6053	6051		4	9606
TLTAVHDAILEDLVFPSEIVGK	Unmodified	2366.2733	0.2733279	351	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	22.615	22.615	3	3.0967E-05	18281	DP1145_10	114.53	99.23			18903000	2541	351	2368	4183	6054;6055	6054		2	9606
TLTAVHDAILEDLVFPSEIVGKR	Unmodified	2522.3744	0.37443893	351	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	5	0					2	21.666	21.666	3	0.0021674	16764	DP1145_10	77.66	49.814			6956600	2542	351	2369	4184;4185	6056;6057	6056		2	9606
TLTDEDEADQGGWLAAFWK	Unmodified	2151.9749	0.97491405	681	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	2	0		1				23.585	23.585	2	0.005065	21691	DP1145_7	105	94.153			3999500	2543	681	2370	4186	6058	6058		1	9606
TLTELILDAQEHVK	Unmodified	1608.8723	0.87228688	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		2				20.274	20.274	2;3	0.0049954	16786	DP1145_7	122.7	77.622			88111000	2544	184	2371	4187;4188	6059;6060	6060		2	9606
TLVLSNLSYSATEETLQEVFEK	Unmodified	2500.2585	0.2584657	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	2.5	0.5		2	2			23.342	23.342	2;3	0	21264	DP1145_7	326.57	276.46			127500000	2545	194	2372	4189;4190;4191;4192	6061;6062;6063;6064;6065;6066;6067	6061		7	9606
TLYGFGG	Unmodified	713.33844	0.33844077	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	19.833	19.833	1	0.00028923	14392	DP1145_10	119.23	119.23			1252600000	2546	371	2373	4193	6068	6068		1	9606
TMLELINQLDGFDPR	Unmodified	1760.8767	0.87672033	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3	0			1			23.474	23.474	2	0.002426	20695	DP1145_8	110.93	50.291			5382900	2547	248	2374	4194	6069	6069		1	9606
TMLELINQLDGFDPR	Oxidation (M)	1776.8716	0.87163495	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	1	0	3	0			1			21.507	21.507	2	0.011029	17829	DP1145_8	92.866	40.868			0	2548	248	2374	4195	6070	6070	228	1	9606
TMLELLNQLDGFEATK	Unmodified	1821.9183	0.91825079	354	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	4	0				1		23.361	23.361	2	2.8271E-74	19665	DP1145_9	241.15	194.74			2385600	2549	354	2375	4196	6071	6071		1	9606
TNAENEFVTIK	Unmodified	1264.6299	0.62993134	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	1	0	1					17.253	17.253	2	2.7066E-05	9735	DP1145_6	132.88	85.301		+	168460000	2550	11	2376	4197	6072;6073	6072		2	9606
TNAENEFVTIKK	Unmodified	1392.7249	0.72489436	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	1	2.67	1.7	1	1			1	15.632	15.632	3	7.7002E-05	7833	DP1145_10	117.2	70.356		+	287230000	2551	11	2377	4198;4199;4200	6074;6075;6076	6074		2	9606
TNIIPVLEDAR	Unmodified	1239.6823	0.68230126	4	A6NHQ2	FBLL1	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	yes	yes	0	0	0	4	0				1		18.923	18.923	2	1.6609E-05	13291	DP1145_9	137.46	0			232440000	2552	4	2378	4201	6077;6078;6079;6080	6080		4	9606
TNLVWDEVSGQWR	Unmodified	1588.7634	0.76340513	486	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	4	0				1		20.717	20.717	2	1.9862E-43	15777	DP1145_9	174.57	141.53			54399000	2553	486	2379	4202	6081	6081		1	9606
TNSTFNQVVLK	Unmodified	1249.6667	0.6666512	424	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	5	0					1	17.069	17.069	2	3.3895E-38	10213	DP1145_10	177.3	102.26			197700000	2554	424	2380	4203	6082;6083;6084	6083		3	9606
TNSTFNQVVLKR	Unmodified	1405.7678	0.76776222	424	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	1	5	0					1	15.903	15.903	3	0.029273	8302	DP1145_10	72.531	45.99			18879000	2555	424	2381	4204	6085	6085		0	9606
TNVVTMPTAHPR	Oxidation (M)	1338.6714	0.671419	451	Q13428	TCOF1	Treacle protein	yes	yes	0	1	0	2	0		1				13.631	13.631	3	0.010979	6680	DP1145_7	71.806	50.15			2902500	2556	451	2382	4205	6086;6087	6087	426	2	9606
TNVVTMPTAHPR	Unmodified	1322.6765	0.67650438	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		3				14.928	14.928	2;3	1.65E-07	8548	DP1145_7	130.01	68.446			33279000	2557	451	2382	4206;4207;4208	6088;6089;6090	6088		3	9606
TNYNDRYDEIR	Unmodified	1457.6535	0.65352033	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	1	4	0				1		15.218	15.218	2	0.018218	7420	DP1145_9	105.17	54.099			105580000	2558	366	2383	4209	6091	6091		1	9606
TPALVFEYINNTDFK	Unmodified	1770.8829	0.88285156	195	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	4	0				1		21.74	21.74	2	0.026491	17278	DP1145_9	91.202	47.522			3594700	2559	195	2384	4210	6092	6092		0	9606
TPCNAGTFSQPEK	Unmodified	1435.6402	0.64017845	62	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	4	0				1		14.854	14.854	2	9.765100000000001E-30	6854	DP1145_9	168.85	129.3			0	2560	62	2385	4211	6093	6093		1	9606
TPGGVFLNLLK	Unmodified	1157.6808	0.6808447	693	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	3	0			1			21.222	21.222	2	0.0006415	17422	DP1145_8	128.6	66.02			0	2561	693	2386	4212	6094	6094		1	9606
TPIGSFLGSLSLLPATK	Unmodified	1700.9713	0.97127264	210	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	4	0				1		23.216	23.216	2	0.01707	19468	DP1145_9	72.891	57.69			1578600	2562	210	2387	4213	6095	6095		1	9606
TPIVGQPSIPGGPVR	Unmodified	1473.8304	0.83036248	14	CON__P12763			yes	yes	0	0	0	3	0			1			17.723	17.723	2	5.0788E-50	12285	DP1145_8	179.19	145.3		+	255200000	2563	14	2388	4214	6096	6096		0	
TPKEEAQSLEDLAGFK	Unmodified	1761.8785	0.87849447	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	2	0		2				19.096	19.096	2;3	0	15054	DP1145_7	286.09	258.12			144300000	2564	276	2389	4215;4216	6097;6098;6099	6099		2	9606
TPKGPSSVEDIK	Unmodified	1256.6612	0.66123147	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	4	0				1		14.459	14.459	3	0.016447	6181	DP1145_9	75.483	41.593			17800000	2565	127	2390	4217	6100	6100		1	9606
TPLEPPPIVVVVMGPPK	Unmodified	1769.0161	0.016114342	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					22.025	22.025	2	0.00018881	17010	DP1145_6	124.39	105.11			5921600	2566	476	2391	4218	6101;6102	6102		2	9606
TPLEQEIFNLLHK	Unmodified	1580.8562	0.85624288	667	Q9BVJ6;Q5TAP6	UTP14A;UTP14C	U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C	yes	no	0	0	0	2	0		1				21.941	21.941	3	0.0080996	19311	DP1145_7	79.089	53.967			37395000	2567	667	2392	4219	6103	6103		1	9606
TPLFDQIIDMLR	Oxidation (M)	1476.7647	0.76465068	321	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	1	0	2	0		1				23.207	23.207	2	0.0081712	21054	DP1145_7	115	81.26			0	2568	321	2393	4220	6104	6104	289	1	9606
TPLHEIALSIK	Unmodified	1220.7129	0.71287311	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	2					17.58	17.58	2;3	2.286E-08	10291	DP1145_6	143.4	101.97			24864000	2569	427	2394	4221;4222	6105;6106	6105		1	9606
TPQQLWYTHEK	Unmodified	1429.699	0.69901396	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				16.172	16.172	3	3.1453999999999997E-38	10488	DP1145_7	156.01	128.46			141120000	2570	184	2395	4223	6107;6108	6107		2	9606
TPTSSPASSPLVAK	Unmodified	1341.714	0.71399532	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.83	1.34	1	2	1	1	1	18.902	18.902	2	1.0639E-189	6687	DP1145_6	243.91	171.67			33470000000	2571	474	2396	4224;4225;4226;4227;4228;4229	6109;6110;6111;6112;6113;6114;6115;6116;6117;6118;6119;6120;6121;6122	6111		14	9606
TPVEPEVAIHR	Unmodified	1246.667	0.66698555	339	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	5	0					2	15.305	15.305	2;3	4.9373E-132	7386	DP1145_10	211.86	160.34			233330000	2572	339	2397	4230;4231	6123;6124;6125	6123		2	9606
TPVPSDIDISR	Unmodified	1198.6194	0.61936665	159	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	2	0		1				17.15	17.15	2	0.012357	11997	DP1145_7	90.15	58.656			17047000	2573	159	2398	4232	6126	6126		0	9606
TQDENPVVHFFK	Unmodified	1459.7096	0.70957864	107	P02686	MBP	Myelin basic protein	yes	yes	0	0	0	3.33	1.7	1			1	1	18.442	18.442	2;3	2.2093E-16	11687	DP1145_6	152.04	90.276			188380000	2574	107	2399	4233;4234;4235	6127;6128;6129	6128		3	9606
TQGNVFATDAILATLMSCTR	Unmodified	2169.0558	0.05582368	49	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	3	0			1			23.604	23.604	2	0.00050754	20844	DP1145_8	132.47	100.76			0	2575	49	2400	4236	6130	6130		1	9606
TQLYEYLQNR	Unmodified	1326.6568	0.65681479	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			18.623	18.623	2	0.0076633	13558	DP1145_8	112.41	59.322			35549000	2576	768	2401	4237	6131	6131		1	9606
TQPSSGVDSAVGTLPATSPQSTSVQAK	Unmodified	2600.293	0.29295372	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	0		1				17.299	17.299	2	1.4836E-24	12422	DP1145_7	141.3	113.36			66371000	2577	451	2402	4238	6132	6132		1	9606
TQSRPGGPPNPPGPSPK	Unmodified	1669.8536	0.85361712	99	O95785	WIZ	Protein Wiz	yes	yes	0	0	1	2	0		1				13.731	13.731	3	0.0047496	6977	DP1145_7	118.47	77.954			8348000	2578	99	2403	4239	6133	6133		0	9606
TREEECHFYAGGQVYPGEASR	Unmodified	2442.0659	0.065871094	442	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	1	5	0					1	16.236	16.236	3	0.0021426	8872	DP1145_10	86.539	66.784			12479000	2579	442	2404	4240	6134	6134		1	9606
TSAAQAIHPGCGFLSENMEFAELCK	Unmodified	2767.2404	0.24040634	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			20.054	20.054	3	0.014813	15894	DP1145_8	48.224	24.716			37618000	2580	639	2405	4241	6135	6135		1	9606
TSASIGSLCADAR	Unmodified	1307.614	0.6139637	335	P60201	PLP1	Myelin proteolipid protein	yes	yes	0	0	0	1	0	1					16.444	16.444	2	1.8207000000000002E-101	8416	DP1145_6	212.82	187.38			76235000	2581	335	2406	4242	6136;6137	6136		2	9606
TSASIILR	Unmodified	859.51272	0.51271674	188	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	3	0			1			16.242	16.242	2	0.031976	10034	DP1145_8	89.55	38.584			70029000	2582	188	2407	4243	6138	6138		1	9606
TSDIFGSPVTATSR	Unmodified	1437.71	0.70997257	694	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	5	0					1	17.948	17.948	2	0.016151	11487	DP1145_10	93.959	37.396			19549000	2583	694	2408	4244	6139	6139		0	9606
TSFFQALGITTK	Unmodified	1312.7027	0.70270235	119	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	4	0				1		21.41	21.41	2	1.2767E-84	16807	DP1145_9	204.34	174.59			318840000	2584	119	2409	4245	6140;6141;6142	6140		3	9606
TSGGDHAPDSPSGENSPAPQGR	Unmodified	2119.9155	0.91550169	634	Q96NY9	MUS81	Crossover junction endonuclease MUS81	yes	yes	0	0	0	3	0			1			13.218	13.218	3	6.5718E-07	5360	DP1145_8	125.03	106.74			1416500	2585	634	2410	4246	6143;6144	6143		2	9606
TSIAIDTIINQK	Unmodified	1315.7347	0.73473076	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			18.924	18.924	2	6.071900000000001E-233	14053	DP1145_8	251.98	207			71177000	2586	215	2411	4247	6145	6145		0	9606
TSMESLIHHFK	Oxidation (M)	1344.6496	0.64962092	75	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	1	0	5	0					1	14.865	14.865	3	0.024894	6678	DP1145_10	62.633	31.809			4381000	2587	75	2412	4248	6146	6146	62	1	9606
TSPEMDIQNPDDGAR	Oxidation (M)	1660.6999	0.69987817	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	0	1	0	1					15.466	15.466	2	0.025321	7058	DP1145_6	67.997	56.897			4344400	2588	276	2413	4249	6147	6147	257	1	9606
TSTTSSMVASAEQPR	Oxidation (M)	1567.7148	0.71479996	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	4	0				1		14.077	14.077	2	2.069E-05	5751	DP1145_9	128.08	92.429			8381300	2589	268	2414	4250	6148;6149;6150	6148	242	3	9606
TSTTSSMVASAEQPR	Unmodified	1551.7199	0.71988533	268	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	4	0				1		15.677	15.677	2	6.4012E-11	8276	DP1145_9	177.44	160.77			236830000	2590	268	2414	4251	6151;6152	6151		2	9606
TTDGYLLR	Unmodified	937.4869	0.48689592	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	4	0				1		16.723	16.723	2	0.0071763	9934	DP1145_9	102.77	45.492			539880000	2591	341	2415	4252	6153	6153		1	9606
TTEPGVTGLLLAVEGPAAK	Unmodified	1823.004	0.0040293305	475	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1	0	2					21.546	21.546	2;3	2.7301E-27	16237	DP1145_6	160.46	129.61			17007000	2592	475	2416	4253;4254	6154;6155;6156	6154		3	9606
TTGFGMIYDSLDYAK	Oxidation (M)	1696.7654	0.76543854	375	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	5	0					1	20.223	20.223	2	0.01253	15071	DP1145_10	75.819	42.762			203890000	2593	375	2417	4255	6157	6157	321	1	9606
TTGFGMIYDSLDYAK	Unmodified	1680.7705	0.77052392	375	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	5	0					1	21.221	21.221	2	2.2774E-105	16413	DP1145_10	211.63	182.39			41371000	2594	375	2417	4256	6158;6159	6158		2	9606
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	Oxidation (M)	3198.6019	0.60194904	337;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	1	0	4	0				1		19.669	19.669	4	0.00053251	14574	DP1145_9	51.296	28.241			44759000	2595	337;389	2418	4257	6160	6160	302	1	9606
TTHFVEGGDAGNREDQINR	Unmodified	2114.973	0.97295699	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	3.25	1.3	1			3		14.514	14.514	2;3;4	1.644E-13	6507	DP1145_9	147.73	100.23			457110000	2596	191	2419	4258;4259;4260;4261	6161;6162;6163;6164	6163		3	9606
TTICQVFAALANQK	Unmodified	1563.8079	0.80791248	717	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	1	0	1					22.049	22.049	2	0.010778	16995	DP1145_6	102.95	52.76			0	2597	717	2420	4262	6165	6165		1	9606
TTPNSGDVQVTEDAVR	Unmodified	1687.8013	0.80130678	242	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	3	0			1			16.239	16.239	2	1.9836E-11	9876	DP1145_8	143.55	84.918			93979000	2598	242	2421	4263	6166;6167	6166		2	9606
TTPSVVAFTADGER	Unmodified	1449.71	0.70997257	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			17.923	17.923	2	1.6331E-17	12504	DP1145_8	183.85	143.79			94227000	2599	254	2422	4264	6168;6169;6170	6169		3	9606
TTPSYVAFTDTER	Unmodified	1486.694	0.69398816	154;148;181	P17066;P48741;P0DMV9;P0DMV8;P11142;P54652	HSPA6;HSPA7;HSPA1B;HSPA1A;HSPA8;HSPA2	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	3.33	1.25		1	1		1	17.956	17.956	2	8.0345E-33	12598	DP1145_8	166.86	142.07			4071199999.9999995	2600	181;148;154	2423	4265;4266;4267	6171;6172;6173;6174	6173		4	9606
TTQPSINESESDPFEVVRDDFK	Unmodified	2539.1714	0.1714416	551	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2.5	0.5		1	1			20.224	20.224	3	0.0019025	15998	DP1145_8	84.371	60.36			10400000	2601	551	2424	4268;4269	6175;6176	6176		2	9606
TTQVPQFILDDFIQNDR	Unmodified	2049.0167	0.016719282	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2	0		1				22.489	22.489	2	2.306E-12	20080	DP1145_7	148.91	102.56			16413000	2602	427	2425	4270	6177;6178	6177		2	9606
TTTVNIGSISTADGSALVK	Unmodified	1833.9684	0.96837211	618	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	4	0				1		18.923	18.923	2	6.0145E-27	13198	DP1145_9	184.76	145.14			48126000	2603	618	2426	4271	6179;6180	6179		2	9606
TTVEYLIK	Unmodified	965.54335	0.54334816	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.456	17.456	2	0.00010367	10018	DP1145_6	132.29	69.571			0	2604	438	2427	4272	6181	6181		1	9606
TVAGGAWTYNTTSAVTVK	Unmodified	1825.921	0.92102798	346	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	5	0					1	18.248	18.248	2	1.0525E-37	12042	DP1145_10	181.76	154.11			80953000	2605	346	2428	4273	6182	6182		0	9606
TVAIHSDVDASSVHVK	Unmodified	1663.8529	0.85294842	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.75	1.09	1		2	1		14.975	14.975	3;4	1.0394E-25	7900	DP1145_8	160.63	132.86			2974999999.9999995	2606	115	2429	4274;4275;4276;4277	6183;6184;6185;6186;6187;6188;6189;6190;6191	6187		9	9606
TVAIYSEQDTGQMHR	Unmodified	1734.7995	0.79953264	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	3.25	1.3		2		1	1	15.69	15.69	2;3	2.7213E-46	9782	DP1145_7	178.67	135.36			205220000	2607	158	2430	4278;4279;4280;4281	6192;6193;6194;6195;6196	6194		4	9606
TVAIYSEQDTGQMHR	Oxidation (M)	1750.7944	0.79444726	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	2.5	1.12	1	1	1	1		14.9	14.9	2;3	0.00032485	7717	DP1145_8	124.6	83.519			945510000	2608	158	2430	4282;4283;4284;4285	6197;6198;6199;6200;6201	6200	170	4	9606
TVANLLSGK	Unmodified	901.52328	0.52328142	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	3	1		1		1		17.011	17.011	2	2.1150000000000002E-54	11751	DP1145_7	176.44	50.631			550490000	2609	451	2431	4286;4287	6202;6203	6202		1	9606
TVELSIPADPANLDSEAK	Unmodified	1868.9367	0.93673763	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.455	19.455	2	3.9307000000000004E-131	13185	DP1145_6	223.03	223.03			807450000	2610	438	2432	4288	6204	6204		1	9606
TVENIKDPLFR	Unmodified	1330.7245	0.72450043	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	1	0	1					17.253	17.253	3	0.0064582	9587	DP1145_6	110.84	69.455			27783000	2611	466	2433	4289	6205	6205		1	9606
TVFAEHISDECK	Unmodified	1434.6449	0.64492948	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	3	1.41	1			2		15.599	15.599	2;3	0.0014678	7117	DP1145_6	107.09	73.819			185080000	2612	257	2434	4290;4291;4292	6206;6207;6208	6206		2	9606
TVFAEHISDECKR	Unmodified	1590.746	0.7460405	257	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	2.5	1.5	1			1		14.824	14.824	3	4.0646E-08	6068	DP1145_6	168.02	145.21			216800000	2613	257	2435	4293;4294	6209;6210	6209		2	9606
TVGALQVLGTEAQSSLLK	Unmodified	1814.0149	0.014928368	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					20.932	20.932	2	0	15452	DP1145_6	336.93	260.6			72489000	2614	401	2436	4295	6211;6212	6211		2	9606
TVHYLPILFIDQLSNR	Unmodified	1928.052	0.051982576	631	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	1	0	1					22.021	22.021	3	0.0036715	17016	DP1145_6	79.346	40.971			4624600	2615	631	2437	4296	6213	6213		1	9606
TVLIMELINNVAK	Oxidation (M)	1472.8273	0.82725094	123	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	1	0	3	0			1			21.572	21.572	2	0.0012307	18019	DP1145_8	107.45	62.096			22586000	2616	123	2438	4297	6214;6215;6216	6215	107	3	9606
TVMENFVAFVDK	Oxidation (M)	1414.6803	0.68025235	10	CON__P02769			yes	yes	0	1	0	5	0					1	19.694	19.694	2	0.0121	14060	DP1145_10	91.701	50.819		+	23761000	2617	10	2439	4298	6217	6217	6	0	
TVMVQEGNVESAYR	Oxidation (M)	1597.7406	0.74062078	404	P82921	MRPS21	28S ribosomal protein S21, mitochondrial	yes	yes	0	1	0	5	0					1	16.223	16.223	2	0.0092507	8866	DP1145_10	81.525	40.797			11712000	2618	404	2440	4299	6218	6218	364	1	9606
TVSGTCGPGQPASSSGGPGRPISGSVSSAR	Unmodified	2757.31	0.31001754	536	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	1	2	0		1				15.074	15.074	3	0.00070701	8854	DP1145_7	58.272	41.555			28578000	2619	536	2441	4300	6219	6219		1	9606
TVSKLNQEIWMMKNQR	2 Oxidation (M)	2037.0136	0.013564934	513	Q2VIQ3	KIF4B	Chromosome-associated kinesin KIF4B	yes	yes	0	2	2	2	0		1				20.574	20.574	2	0.044885	17353	DP1145_7	50.484	29.088			19175000	2620	513	2442	4301	6220	6220	467;468	1	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	Oxidation (M)	2944.4488	0.44880244	127	P06748	NPM1	Nucleophosmin	yes	yes	0	1	1	3.55	0.891		2	2	6	1	23.429	23.429	2;3;4	3.4793E-54	15073	DP1145_10	166.43	147.57			10467000000	2621	127	2443	4302;4303;4304;4305;4306;4307;4308;4309;4310;4311;4312	6221;6222;6223;6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234;6235;6236;6237;6238;6239;6240;6241;6242;6243;6244;6245;6246;6247;6248	6223	109	28	9606
TVSLGAGAKDELHIVEAEAMNYEGSPIK	Unmodified	2928.4539	0.45388781	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	3.67	0.471			2	4		23.334	23.334	2;3;4	1.2630999999999998E-53	15825	DP1145_9	183.39	165.88			1964299999.9999998	2622	127	2443	4313;4314;4315;4316;4317;4318	6249;6250;6251;6252;6253;6254;6255;6256;6257;6258;6259;6260;6261;6262;6263	6261		14	9606
TVSNSVPGRPVSSLGPGQTVSSSGPTIKPK	Unmodified	2920.5618	0.56179878	536	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	2	2.5	0.5		2	2			16.076	16.076	3;4	3.8674E-08	10308	DP1145_7	86.869	66.838			312100000	2623	536	2444	4319;4320;4321;4322	6264;6265;6266;6267;6268;6269	6264		6	9606
TVTAMDVVYALK	Oxidation (M)	1325.6901	0.69008876	371	P62805	HIST1H4A	Histone H4	yes	yes	0	1	0	3.33	1.7	1			1	1	19.239	19.239	2	0.0012266	13483	DP1145_10	111.61	57.85			665300000	2624	371	2445	4323;4324;4325	6270;6271;6272;6273;6274	6270	316	4	9606
TVTAMDVVYALK	Unmodified	1309.6952	0.69517413	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	20.691	20.691	2	0.00024701	15624	DP1145_10	119.68	81.869			262370000	2625	371	2445	4326	6275;6276	6275		2	9606
TVTAMDVVYALKR	Oxidation (M)	1481.7912	0.79119978	371	P62805	HIST1H4A	Histone H4	yes	yes	0	1	1	5	0					2	18.361	18.361	2;3	1.1058E-16	12118	DP1145_10	153.54	121.78			613890000	2626	371	2446	4327;4328	6277;6278;6279	6277	316	3	9606
TVTAMDVVYALKR	Unmodified	1465.7963	0.79628516	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	19.533	19.533	3	3.1745E-11	13953	DP1145_10	134.38	108.73			204040000	2627	371	2446	4329	6280	6280		1	9606
TVTNAVVTVPAYFNDSQR	Unmodified	1980.9905	0.99050453	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			19.424	19.424	2	0	14773	DP1145_8	346.65	292.17			613950000	2628	154	2447	4330	6281;6282	6281		2	9606
TVVNKDVFRDPALK	Unmodified	1600.8937	0.89369102	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	2	5	0					1	16.114	16.114	3	0.010846	8592	DP1145_10	122.46	66.48			139470000	2629	345	2448	4331	6283;6284	6284		2	9606
TYDPSGDSTLPTCSK	Unmodified	1627.7036	0.70356657	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	3	0			1			16.063	16.063	2	6.6586E-11	9605	DP1145_8	138.24	125.66			156250000	2630	768	2449	4332	6285;6286	6285		2	9606
TYHALSNLPK	Unmodified	1142.6084	0.60840804	30	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	4	0				1		15.097	15.097	2	0.002304	7399	DP1145_9	104.2	38.127			60363000	2631	30	2450	4333	6287	6287		1	9606
TYPGVMHSSCPQEMAAVK	2 Oxidation (M)	2023.8802	0.8801675	92	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	2	0	5	0					1	14.546	14.546	3	0.019894	6095	DP1145_10	65.905	49.411			33705000	2632	92	2451	4334	6288	6288	73;74	1	9606
TYQAIKDFNR	Unmodified	1254.6357	0.63568542	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					15.632	15.632	2;3	7.2072E-12	7147	DP1145_6	154.85	127.08			124840000	2633	438	2452	4335;4336	6289;6290	6289		2	9606
TYSLGSALRPSTSR	Unmodified	1494.7791	0.77905519	137	P08670	VIM	Vimentin	yes	yes	0	0	1	3	0			1			16.44	16.44	3	0.042006	10146	DP1145_8	74.698	36.73			119580000	2634	137	2453	4337	6291	6291		0	9606
TYSYLTPDLWK	Unmodified	1385.6867	0.68671794	173	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	2.5	1.5	1			1		20.635	20.635	2	0.021173	15696	DP1145_9	86.882	66.741			89750000	2635	173	2454	4338;4339	6292;6293	6293		2	9606
TYTDELTPIESAVSVFK	Unmodified	1898.9513	0.95132506	78	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	5	0					2	22.376	22.376	2	2.6703000000000003E-127	17978	DP1145_10	216.83	138.31			0	2636	78	2455	4340;4341	6294;6295	6295		2	9606
VAALQNLVK	Unmodified	954.58622	0.58621603	478	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	0		1				17.199	17.199	2	0.041752	12038	DP1145_7	79.451	22.73			82602000	2637	478	2456	4342	6296	6296		0	9606
VADEMDVMLGQEVGYSIR	2 Oxidation (M)	2042.9289	0.92889183	52	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	2	0	5	0					1	16.054	16.054	3	0.038267	8589	DP1145_10	53.861	13.314			139960000	2638	52	2457	4343	6297	6297	45;46	1	9606
VAEDEAEAAAAAK	Unmodified	1244.5885	0.58846046	135	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	3	0			1			14.781	14.781	2	1.0952E-16	7690	DP1145_8	147.73	98.309			100790000	2639	135	2458	4344	6298	6298		1	9606
VAEIPFNSTNK	Unmodified	1218.6245	0.62445203	167	P13637;P50993;Q13733;P54707	ATP1A3;ATP1A2;ATP1A4;ATP12A	Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2	yes	no	0	0	0	2	1	1		1			16.663	16.663	2	0.021624	10609	DP1145_8	78.098	38.452			66224000	2640	167	2459	4345;4346	6299;6300	6300		2	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	Oxidation (M)	2918.2988	0.29884374	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.89	1.2	1	3	2	2	1	14.717	14.717	2;3;4	1.3911E-08	7463	DP1145_8	90.778	77.686			5133300000	2641	474	2460	4347;4348;4349;4350;4351;4352;4353;4354;4355	6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311;6312;6313	6311	447	13	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNK	Unmodified	2902.3039	0.30392911	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	0.957	1	2	2	1		15.155	15.155	3;4	5.219799999999999E-19	8233	DP1145_8	129.74	116.49			2169600000	2642	474	2460	4356;4357;4358;4359;4360;4361	6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326	6323		13	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	Oxidation (M)	3074.4	0.39995476	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2.9	1.14	1	3	3	2	1	14.281	14.281	3;4;5	6.0296E-09	6598	DP1145_8	95.153	71.617			4400600000	2643	474	2461	4362;4363;4364;4365;4366;4367;4368;4369;4370;4371	6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338;6339;6340;6341;6342;6343;6344;6345;6346;6347;6348	6336	447	22	9606
VAEPGAEATSSTGEESGSEHPPAVPMHNKR	Unmodified	3058.405	0.40504014	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	1.83	0.687	2	3	1			14.637	14.637	3;4;5	3.2463E-09	8097	DP1145_7	98.015	85.799			1708399999.9999998	2644	474	2461	4372;4373;4374;4375;4376;4377	6349;6350;6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365	6355		17	9606
VAFDPEQKPLHGVLK	Unmodified	1676.925	0.92499115	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3	1.18	1	3	2	3	1	16.61	16.61	2;3;4	3.9216E-33	9643	DP1145_9	166.11	121.47			32662000000	2645	474	2462	4378;4379;4380;4381;4382;4383;4384;4385;4386;4387	6366;6367;6368;6369;6370;6371;6372;6373;6374;6375;6376;6377;6378;6379	6378		13	9606
VAHEPVAPPEDKESESEAK	Unmodified	2047.9698	0.96982867	98	O95674	CDS2	Phosphatidate cytidylyltransferase 2	yes	yes	0	0	1	1	0	1					13.643	13.643	4	0.0016425	4542	DP1145_6	87.287	61.463			2328100	2646	98	2463	4388	6380	6380		1	9606
VANVSLLALYK	Unmodified	1189.7071	0.70705945	360	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	3	2	1				1	19.794	19.794	2	0.0030775	14439	DP1145_10	115.71	81.528			214760000	2647	360	2464	4389;4390	6381;6382	6381		1	9606
VAPEEHPVLLTEAPLNPK	Unmodified	1953.0571	0.057127534	337;389	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	3.2	1.47	1	1		2	1	17.809	17.809	2;3	1.1017E-49	11584	DP1145_9	179.67	61.881			780700000	2648	337;389	2465	4391;4392;4393;4394;4395	6383;6384;6385;6386;6387;6388;6389;6390	6390		7	9606
VAPPGLTQIPQIQK	Unmodified	1488.8664	0.86641364	113	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	4	0				1		18.523	18.523	2	0.019325	12673	DP1145_9	87.789	50.598			48705000	2649	113	2466	4396	6391	6391		0	9606
VAQVAEITYGQK	Unmodified	1305.6929	0.69286595	88	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	4	0				1		16.449	16.449	2	0.024216	9332	DP1145_9	83.081	47.813			33681000	2650	88	2467	4397	6392	6392		0	9606
VASGCLDINSSVK	Unmodified	1348.6657	0.66566492	116	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	2.67	1.25	1		1	1		16.309	16.309	2	2.7376E-43	10075	DP1145_8	172.21	125.76			1073499999.9999999	2651	116	2468	4398;4399;4400	6393;6394;6395;6396	6394		4	9606
VASLEESEGNKQDLK	Unmodified	1645.8159	0.81589421	426	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	3	0			1			14.431	14.431	3	2.649E-62	6982	DP1145_8	181.76	121.78			58447000	2652	426	2469	4401	6397	6397		0	9606
VATVSLPR	Unmodified	841.50215	0.50215205	6	CON__P00761			yes	yes	0	0	0	2.67	1.41	3	1	2	2	1	21.977	21.977	2	1.7789E-16	9113	DP1145_10	162.31	70.115		+	291500000000	2653	6	2470	4402;4403;4404;4405;4406;4407;4408;4409;4410	6398;6399;6400;6401;6402;6403;6404;6405;6406;6407;6408;6409;6410;6411;6412;6413;6414;6415;6416;6417;6418;6419;6420;6421;6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437;6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453;6454;6455;6456;6457;6458;6459;6460;6461;6462;6463	6403		65	
VATWFNQPAR	Unmodified	1188.604	0.60399136	216	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	5	0					1	17.948	17.948	2	0.0039255	11524	DP1145_10	107.29	61.959			85605000	2654	216	2471	4411	6464;6465;6466	6465		3	9606
VAVCDIPPR	Unmodified	1025.5328	0.53280025	455;664	Q13509;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q9BUF5	TUBB3;TUBB1;TUBB6	Tubulin beta-3 chain;Tubulin beta-1 chain;Tubulin beta-6 chain	no	no	0	0	0	3	0			1			15.555	15.555	2	0.0069027	8739	DP1145_8	95.531	70.636			22162000	2655	455;664	2472	4412	6467	6467		1	9606
VAVLGASGGIGQPLSLLLK	Unmodified	1792.0822	0.082220072	263	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	4	0				1		22.337	22.337	2	0.007153	18226	DP1145_9	96.371	80.615			5254700	2656	263	2473	4413	6468	6468		1	9606
VAVTPPGLAR	Unmodified	979.58147	0.581465	223	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	3	0			1			16.242	16.242	2	0.0034976	9969	DP1145_8	92.439	47.358			8646700	2657	223	2474	4414	6469	6469		0	9606
VAYVSFGPHAGK	Unmodified	1231.635	0.63495714	300	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	5	0					2	16.022	16.022	2;3	2.2247E-05	8503	DP1145_10	126.07	103.33			430170000	2658	300	2475	4415;4416	6470;6471;6472;6473	6472		4	9606
VCNPIITK	Unmodified	943.51609	0.51608756	154	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	3	0			1			15.278	15.278	2	0.037571	8302	DP1145_8	89.752	45.031			55719000	2659	154	2476	4417	6474	6474		0	9606
VCTLAIIDPGDSDIIR	Unmodified	1756.9029	0.90293508	378	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	5	0					1	20.592	20.592	2	0.0063529	15592	DP1145_10	107.18	65.892			150560000	2660	378	2477	4418	6475	6475		1	9606
VDCTAHSDVCSAQGVR	Unmodified	1760.757	0.7570159	587	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	3	0			1			14.065	14.065	3	0.00011832	6584	DP1145_8	126.77	109.52			0	2661	587	2478	4419	6476	6476		1	9606
VDDEPMDVDKGPGSTK	Oxidation (M)	1704.7512	0.75124504	440	Q13123	IK	Protein Red	yes	yes	0	1	1	3.5	0.5			1	1		13.97	13.97	3	4.4351E-11	6529	DP1145_8	141	111.64			44738000	2662	440	2479	4420;4421	6477;6478;6479	6477	418	2	9606
VDENGPELLPR	Unmodified	1237.6303	0.63026569	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					17.532	17.532	2	0.0021128	10234	DP1145_6	104.22	67.461			16846000	2663	608	2480	4422	6480	6480		1	9606
VDIGDTIIYLVH	Unmodified	1356.7289	0.7289171	736	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	0		1				22.76	22.76	2	0.002199	20483	DP1145_7	130.27	96.065			6221900	2664	736	2481	4423	6481	6481		1	9606
VDKAAAAAAALQAK	Unmodified	1297.7354	0.73539946	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	3	0			1			15.305	15.305	3	0.020669	8387	DP1145_8	87.824	40.635			0	2665	250	2482	4424	6482	6482		1	9606
VDLLGEFQSALPK	Unmodified	1415.766	0.76603089	698	Q9H9L3	ISG20L2	Interferon-stimulated 20 kDa exonuclease-like 2	yes	yes	0	0	0	4	0				1		22.198	22.198	2	0.0042573	17995	DP1145_9	103.08	78.229			14141000	2666	698	2483	4425	6483;6484	6484		2	9606
VDLLNQEIEFLK	Unmodified	1459.7922	0.79224564	18	P35908;CON__P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	2	0.816	1	1	1			21.762	21.762	2	7.8197E-156	18151	DP1145_8	229.82	177.09		+	137160000	2667	18	2484	4426;4427;4428	6485;6486;6487;6488	6488		2	9606
VDMKEEPLAVSK	Oxidation (M)	1360.6908	0.69081704	276	P46013	MKI67	Antigen KI-67	yes	yes	0	1	1	2	0		1				14.331	14.331	3	0.023701	7704	DP1145_7	76.868	30.977			59576000	2668	276	2485	4429	6489	6489	258	1	9606
VDNDENEHQLSLR	Unmodified	1567.7227	0.72266253	127	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	3.7	0.781		1	2	6	1	20.696	20.696	2;3	0	7410	DP1145_9	298.84	244.12			48472000000	2669	127	2486	4430;4431;4432;4433;4434;4435;4436;4437;4438;4439	6490;6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508;6509	6498		19	9606
VDNMIIQSISLLDQLDKDINTFSMR	2 Oxidation (M)	2940.4573	0.45725863	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	2	1	3	0			1			24.326	24.326	3	0.00092615	21925	DP1145_8	68.303	43.658			2232500	2670	38	2487	4440	6510	6510	29;30	1	9606
VDNSSLTGESEPQTR	Unmodified	1618.7435	0.74345755	112;167	P05023;P20648;P13637;P50993	ATP1A1;ATP4A;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	no	no	0	0	0	2.67	1.7	1	1			1	15.111	15.111	2	3.3775E-216	6997	DP1145_10	253.42	193.32			116350000	2671	112;167	2488	4441;4442;4443	6511;6512;6513;6514;6515;6516	6511		6	9606
VDPLFTELLNGIR	Unmodified	1485.8191	0.81912909	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1.5	0.5	1	1				23.293	23.293	2	2.3969E-05	18838	DP1145_6	120.63	63.998			2917300	2672	608	2489	4444;4445	6517;6518;6519	6517		2	9606
VDPVYIHLAER	Unmodified	1310.6983	0.69828568	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	2					17.554	17.554	2;3	0.0010136	10184	DP1145_6	105.2	71.313			157740000	2673	438	2490	4446;4447	6520;6521	6520		2	9606
VDSGIQPGSDISIYYDPMISK	Oxidation (M)	2300.0882	0.088229245	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	1	0	3	0			1			20.124	20.124	2	0.0016603	15891	DP1145_8	83.292	62.486			328140000	2674	115	2491	4448	6522	6522	95	1	9606
VDSGIQPGSDISIYYDPMISK	Unmodified	2284.0933	0.093314623	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			1			21.025	21.025	2	1.4965E-14	17132	DP1145_8	153.48	113			174690000	2675	115	2491	4449	6523	6523		1	9606
VDWQENDFSK	Unmodified	1266.5517	0.55168102	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					17.854	17.854	2	1.5458000000000001E-25	10670	DP1145_6	164.68	130.59			353170000	2676	438	2492	4450	6524;6525	6524		2	9606
VDWQENDFSKR	Unmodified	1422.6528	0.65279205	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					16.554	16.554	2;3	0.0041319	8716	DP1145_6	100.69	69.256			63187000	2677	438	2493	4451;4452	6526;6527	6527		2	9606
VEAVNMAEGIIHDTETK	Unmodified	1855.8986	0.89857798	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.325	19.325	3	0.0052969	14732	DP1145_8	93.768	67.559			25472000	2678	254	2494	4453	6528	6528		0	9606
VEDAADSATKPENLSSK	Unmodified	1760.8428	0.84283724	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	1	1.5	0.5	1	1				14.338	14.338	3	1.5865E-11	7654	DP1145_7	172.57	121.56			102770000	2679	276	2495	4454;4455	6529;6530	6530		2	9606
VEEQEPELTSTPNFVVEVIK	Unmodified	2286.1631	0.16310875	425	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	4	0				1		21.11	21.11	2	3.2999E-50	16412	DP1145_9	222.88	195.78			105370000	2680	425	2496	4456	6531;6532;6533	6532		3	9606
VEGRPGASLPPLDLQALEK	Unmodified	1989.0895	0.089490294	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	2.33	1.25	1	1		1		19.354	19.354	3	7.8572E-05	13972	DP1145_9	126.43	91.479			1720099999.9999998	2681	158	2497	4457;4458;4459	6534;6535;6536;6537	6537		4	9606
VEGTEPTTAFNLFVGNLNFNK	Unmodified	2311.1485	0.14846174	194	P19338	NCL	Nucleolin	yes	yes	0	0	0	3	0.707		1	2	1		22.887	22.887	2;3	8.3486E-99	20574	DP1145_7	251.24	202.77			200280000	2682	194	2498	4460;4461;4462;4463	6538;6539;6540;6541;6542;6543;6544	6538		7	9606
VEILANDQGNR	Unmodified	1227.6208	0.62076364	181	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	4	0.816			1	1	1	15.289	15.289	2	1.2745E-27	8442	DP1145_8	164.46	0			3254699999.9999995	2683	181	2499	4464;4465;4466	6545;6546;6547;6548;6549	6546		5	9606
VEIMPPPPKPK	Oxidation (M)	1247.6948	0.6947802	156	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	1	1	3	0			1			14.131	14.131	3	0.019755	6739	DP1145_8	82.831	55.403			8115900	2684	156	2500	4467	6550	6550	156	1	9606
VELSDVQNPAISITENVLHFK	Unmodified	2352.2325	0.23252572	732	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	0	1					22.157	22.157	3	7.3553E-15	17142	DP1145_6	140.95	116.89			6748400	2685	732	2501	4468	6551;6552;6553	6552		3	9606
VELSTVNVR	Unmodified	1015.5662	0.56620887	610	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	4	0				1		16.193	16.193	2	1.2153E-11	8920	DP1145_9	147.34	73.719			0	2686	610	2502	4469	6554	6554		1	9606
VETFSGVYK	Unmodified	1028.5179	0.51786169	351	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	5	0					1	16.565	16.565	2	0.0027869	9506	DP1145_10	107.01	10.817			68690000	2687	351	2503	4470	6555;6556;6557	6557		3	9606
VETGVLKPGMVVTFAPVNVTTEVK	Oxidation (M)	2530.3717	0.37166174	391	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	1	1	2.5	1.5	1			1		19.406	19.406	3	2.2604E-09	13970	DP1145_9	123.54	123.54			188390000	2688	391	2504	4471;4472	6558;6559;6560	6560	332	3	9606
VETGVLKPGMVVTFAPVNVTTEVK	Unmodified	2514.3767	0.37674711	391	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	1	0	1					19.955	19.955	3	0.031377	14045	DP1145_6	70.679	57.561			19831000	2689	391	2504	4473	6561	6561		0	9606
VEVGTEVTDYR	Unmodified	1266.6092	0.6091959	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					16.753	16.753	2	0.0046232	9045	DP1145_6	98.048	61.491			1351400000	2690	438	2505	4474	6562;6563	6562		2	9606
VEWTSDTVDNEHMGR	Oxidation (M)	1790.753	0.75297638	70	O60927	PPP1R11	Protein phosphatase 1 regulatory subunit 11	yes	yes	0	1	0	5	0					1	15.623	15.623	3	0.019644	7972	DP1145_10	65.565	54.285			7386700	2691	70	2506	4475	6564	6564	58	0	9606
VFANNADQQLVK	Unmodified	1345.699	0.69901396	524	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	4	0				1		16.416	16.416	2	0.00010976	9088	DP1145_9	117.7	74.834			17696000	2692	524	2507	4476	6565	6565		0	9606
VFCVEEEDSESSLQK	Unmodified	1784.7775	0.77745979	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.4	1.02	1	2	1	1		17.359	17.359	2;3	0	12285	DP1145_7	293.88	248.05			9906200000	2693	474	2508	4477;4478;4479;4480;4481	6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578	6568		13	9606
VFCVEEEDSESSLQKR	Unmodified	1940.8786	0.87857082	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.29	1.03	2	2	2	1		16.429	16.429	2;3	0	10831	DP1145_7	327.1	286.95			7825999999.999999	2694	474	2509	4482;4483;4484;4485;4486;4487;4488	6579;6580;6581;6582;6583;6584;6585;6586;6587	6582		9	9606
VFDGIPPPYDK	Unmodified	1246.6234	0.6233894	260	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	5	0					1	16.176	16.176	2	0.017578	11986	DP1145_10	85.29	32.201			10521000000	2695	260	2510	4489	6588	6588		0	9606
VFDYSEYWEGAR	Unmodified	1520.6572	0.65720872	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0.816	1	1	1			20.282	20.282	2	0.0049349	16906	DP1145_7	97.456	73.467			1510299999.9999998	2696	158	2511	4490;4491;4492	6589;6590;6591;6592	6590		4	9606
VFEISPFEPWITR	Unmodified	1619.8348	0.83477916	506	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	4	0				1		22.754	22.754	2	1.0892E-32	18849	DP1145_9	164.97	114.62			5810800	2697	506	2512	4493	6593;6594;6595;6596;6597	6596		5	9606
VFEVSLADLQNDEVAFRK	Unmodified	2079.0637	0.063669474	341	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	4	0				1		20.618	20.618	3	0.029498	15696	DP1145_9	85.469	63.417			70978000	2698	341	2513	4494	6598	6598		0	9606
VFIGNLNTLVVK	Unmodified	1315.7864	0.7863724	133	P07910;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	4	0				1		20.024	20.024	2	4.3625E-14	14809	DP1145_9	140.45	109.76			92460000	2699	133	2514	4495	6599	6599		0	9606
VFLDVLMK	Oxidation (M)	979.54124	0.54123967	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	3.75	0.829			2	1	1	19.328	19.328	1;2	0.0092628	14785	DP1145_8	101.64	101.64			2712800000	2700	474	2515	4496;4497;4498;4499	6600;6601;6602;6603;6604	6602	448	3	9606
VFLDVLMK	Unmodified	963.54633	0.54632505	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	0.707		1	2	1		20.558	20.558	1;2	5.9047E-07	16610	DP1145_8	124.59	124.59			3244799999.9999995	2701	474	2515	4500;4501;4502;4503	6605;6606;6607;6608;6609	6608		4	9606
VFLDVLMKEVLCPESQSPNGVR	Oxidation (M)	2532.2716	0.27163011	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	2	0		1				20.665	20.665	3	2.0575E-07	17261	DP1145_7	128.66	97.305			70271000	2702	474	2516	4504	6610;6611;6612	6610	448	3	9606
VFLENVIR	Unmodified	988.57057	0.57056597	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	5	0					1	18.934	18.934	2	2.2852E-06	13031	DP1145_10	143.02	86.898			3629899999.9999995	2703	371	2517	4505	6613;6614;6615	6613		3	9606
VFLENVIRDAVTYTEHAK	Unmodified	2104.0953	0.095303954	371	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	5	0					1	21.726	21.726	3	0.030607	17068	DP1145_10	75.143	52.947			10261000	2704	371	2518	4506	6616	6616		1	9606
VFLKEDTGETHGDTR	Unmodified	1703.8115	0.81147753	591	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	1	3.33	0.471			2	1		14.146	14.146	3;4	1.8108E-12	5833	DP1145_9	143.05	108.62			210560000	2705	591	2519	4507;4508;4509	6617;6618;6619	6619		2	9606
VFQFLNAK	Unmodified	965.53345	0.53345218	407	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	5	0					1	18.648	18.648	2	5.4084E-06	12722	DP1145_10	138.48	80.668			312010000	2706	407	2520	4510	6620	6620		1	9606
VFSLMDPNSPER	Oxidation (M)	1406.65	0.65001485	554	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	1	0	4	0				1		17.578	17.578	2	0.01147	11118	DP1145_9	77.379	53.528			11141000	2707	554	2521	4511	6621	6621	486	1	9606
VFTTQELVQAFTHAPATLEADR	Unmodified	2444.2336	0.23358835	96	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	4	0				1		22.198	22.198	3	7.2078E-31	17913	DP1145_9	220.78	188.9			61839000	2708	96	2522	4512	6622;6623;6624	6622		3	9606
VGDGDLSAEEIPENEVSLR	Unmodified	2027.9647	0.96474329	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.5	1.12	1	1	1	1		19.074	19.074	2	0	15026	DP1145_7	319.64	283.83			4290299999.9999995	2709	474	2523	4513;4514;4515;4516	6625;6626;6627;6628;6629;6630;6631;6632	6627		8	9606
VGDGDLSAEEIPENEVSLRR	Unmodified	2184.0659	0.065854319	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	2.86	1.25	1	2	2	1	1	17.964	17.964	2;3	2.9618999999999997E-51	11679	DP1145_9	173.28	130.47			6744999999.999999	2710	474	2524	4517;4518;4519;4520;4521;4522;4523	6633;6634;6635;6636;6637;6638;6639;6640	6640		7	9606
VGDPQELNGITR	Unmodified	1297.6626	0.66262845	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					16.653	16.653	2	0.014441	8607	DP1145_6	82.171	44.827			17884000	2711	290	2525	4524	6641	6641		1	9606
VGEVTYVELLMDAEGK	Oxidation (M)	1767.8601	0.86006721	307	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	3	0			1			21.524	21.524	2	0.0045967	17961	DP1145_8	105.65	56.372			16606000	2712	307	2526	4525	6642	6642	282	1	9606
VGGKELLADQNLK	Unmodified	1383.7722	0.7721789	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	1.67	0.471	1	2				15.737	15.737	2;3	1.3473E-17	9818	DP1145_7	154.36	97.251			989730000	2713	474	2527	4526;4527;4528	6643;6644;6645	6645		2	9606
VGGSDEEASGIPSR	Unmodified	1359.6266	0.62663688	705	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	3	0			1			14.978	14.978	2	1.7770999999999998E-46	7952	DP1145_8	203.03	161.15			46959000	2714	705	2528	4529	6646	6646		1	9606
VGINYQPPTVVPGGDLAK	Unmodified	1823.9781	0.97814893	393;550;394	P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;P68366	TUBA1B;TUBA1A;TUBA3E;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-4A chain	no	no	0	0	0	3.25	1.48	1		1	1	1	19.037	19.037	2	2.2502E-18	12515	DP1145_6	149.57	99.374			5516300000	2715	393;550;394	2529	4530;4531;4532;4533	6647;6648;6649;6650;6651;6652;6653	6650		7	9606
VGIPVTDENGNR	Unmodified	1269.6313	0.63132832	696	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		15.778	15.778	2	0.0042085	8212	DP1145_9	99.013	75.693			38036000	2716	696	2530	4534	6654	6654		1	9606
VGLTNYAAAYCTGLLLAR	Unmodified	1926.0033	0.003317824	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	4	0				1		21.41	21.41	2	0.018126	16929	DP1145_9	104.7	99.805			27898000	2717	278	2531	4535	6655	6655		1	9606
VGMVQELLR	Oxidation (M)	1059.5747	0.57466507	585	Q8NAA5	LRRC75A	Leucine-rich repeat-containing protein 75A	yes	yes	0	1	0	5	0					1	22.899	22.899	2	0.03255	18738	DP1145_10	71.877	14.318			3556200	2718	585	2532	4536	6656	6656	511	1	9606
VGPATPSAQVGK	Unmodified	1110.6033	0.60332266	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2.67	1.25	1		1	1		14.417	14.417	2	1.3222E-23	5416	DP1145_6	160.82	136.3			100950000	2719	451	2533	4537;4538;4539	6657;6658;6659;6660;6661	6658		5	9606
VGPEELPVVGQLLR	Unmodified	1504.8613	0.86132826	722	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	2	0		1				21.684	21.684	2	0.043289	18850	DP1145_7	68.786	34.91			9528600	2720	722	2534	4540	6662	6662		1	9606
VGQAVDVVGQAGKPK	Unmodified	1451.8096	0.80962704	443	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	1	0	1					14.745	14.745	3	6.8919E-05	5742	DP1145_6	126.09	89.455			2010600	2721	443	2535	4541	6663	6663		0	9606
VGQEIEVRPGIVSK	Unmodified	1509.8515	0.85149185	266	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	1	3	0			1			16.058	16.058	3	0.0070819	9573	DP1145_8	118.61	76.182			0	2722	266	2536	4542	6664	6664		1	9606
VGVKEELLAVGK	Unmodified	1240.7391	0.73908786	276	P46013	MKI67	Antigen KI-67	yes	no	0	0	1	1.67	0.471	1	2				16.999	16.999	2;3	2.415E-22	11902	DP1145_7	149.94	119.78			312290000	2723	276	2537	4543;4544;4545	6665;6666;6667;6668	6666		4	9606
VGYTPDWIFLLR	Unmodified	1478.7922	0.79218606	411	Q00610;P53675	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	yes	no	0	0	0	1	0	1					23.412	23.412	2	0.0099953	18990	DP1145_6	87.806	66.026			3605400	2724	411	2538	4546	6669	6669		1	9606
VHAELADVLTEAVVDSILAIK	Unmodified	2205.2256	0.22564942	259	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	3	0			1			25.601	25.601	3	1.1723E-05	23625	DP1145_8	92.474	77.545			0	2725	259	2539	4547	6670	6670		1	9606
VHIEIGPDGR	Unmodified	1091.5724	0.57235688	232;310	P31943;P55795;P52597	HNRNPH1;HNRNPH2;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	4	0.816			1	1	1	15.53	15.53	2	0.0061934	8028	DP1145_9	109.48	74.21			549760000	2726	232;310	2540	4548;4549;4550	6671;6672;6673	6673		3	9606
VHIGQVIMSIR	Oxidation (M)	1267.7071	0.70707622	220	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	1	0	5	0					1	17.347	17.347	3	0.021994	10728	DP1145_10	64.374	41.148			148520000	2727	220	2541	4551	6674	6674	216	1	9606
VHPAEPFTGELPAQQTLPILGEK	Unmodified	2471.306	0.30602501	41	O00763	ACACB	Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	yes	0	0	0	1	0	1					19.902	19.902	3	0.0016662	13750	DP1145_6	52.09	32.711			11579000	2728	41	2542	4552	6675;6676	6675		2	9606
VHTVVASNNGSVFSVEVDGSK	Unmodified	2131.0546	0.054561351	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	3	0			2			17.573	17.573	2;3	2.9072E-09	12173	DP1145_8	176.08	148.4			130980000	2729	115	2543	4553;4554	6677;6678;6679	6678		3	9606
VIAGLYQR	Unmodified	918.5287	0.52870115	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					16.3	16.3	2	0.022424	8311	DP1145_6	92.191	54.632			32803000	2730	401	2544	4555	6680	6680		1	9606
VIAQLSECEK	Unmodified	1175.5856	0.58562368	613	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	2	0		1				15.555	15.555	2	0.024229	9391	DP1145_7	81.972	45.59			24430000	2731	613	2545	4556	6681	6681		1	9606
VIDPATATSVDLR	Unmodified	1356.7249	0.72489436	302	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	3	0			1			17.923	17.923	2	0.00037306	12669	DP1145_8	117.52	69.332			88533000	2732	302	2546	4557	6682	6682		1	9606
VIDRFDEGEDGEGDFLVVGSIR	Unmodified	2423.1605	0.16048299	724	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	2	0		1				20.264	20.264	3	0.0073356	16932	DP1145_7	53.747	29.52			29910000	2733	724	2547	4558	6683	6683		1	9606
VIEASDVVLEVLDAR	Unmodified	1626.8829	0.88285156	668	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	3	0			1			22.994	22.994	2	0.018913	19957	DP1145_8	93.959	49.756			0	2734	668	2548	4559	6684	6684		1	9606
VIERPPLTQQQAAQK	Unmodified	1705.9475	0.9475175	551	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	3	1		1		1		14.709	14.709	3	0.00089901	6669	DP1145_9	118.73	94.505			84582000	2735	551	2549	4560;4561	6685;6686	6686		2	9606
VIGLQIFNIDTDR	Unmodified	1502.8093	0.80929269	538	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	2	0		1				21.684	21.684	2	0.0022806	18922	DP1145_7	106.29	68.815			30299000	2736	538	2550	4562	6687	6687		1	9606
VIGSELVQK	Unmodified	971.56515	0.56514624	248	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	3	0			1			16.022	16.022	2	2.8007E-07	9532	DP1145_8	139.97	43.78			0	2737	248	2551	4563	6688	6688		1	9606
VIGSGCNLDSAR	Unmodified	1247.5928	0.59283433	104;129	P00338;Q6ZMR3;P07864;P07195	LDHA;LDHAL6A;LDHC;LDHB	L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain	no	no	0	0	0	2.33	1.25	1	1		1		15.238	15.238	2	9.3895E-43	7414	DP1145_9	173.37	122.31			189310000	2738	104;129	2552	4564;4565;4566	6689;6690;6691;6692	6691		4	9606
VIHDNFGIVEGLMTTVHAITATQK	Oxidation (M)	2610.3476	0.34757225	109	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	1	0	4	0				1		21.065	21.065	3	2.9679E-06	16405	DP1145_9	105.22	85.052			13233000	2739	109	2553	4567	6693	6693	79	1	9606
VIHLSNLPHSGYSDSAVLK	Unmodified	2036.0691	0.069089203	273	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	0		2				17.156	17.156	3;4	0.0016508	12113	DP1145_7	91.932	47.198			100650000	2740	273	2554	4568;4569	6694;6695	6694		2	9606
VILHLKEDQTEYLEER	Unmodified	2014.0371	0.037120373	136;132	P07900;Q58FF6;P08238;Q58FF7	HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	no	no	0	0	1	2.5	0.5		1	1			17.261	17.261	3	1.4104E-06	11436	DP1145_8	130.27	76.704			182690000	2741	132;136	2555	4570;4571	6696;6697	6697		1	9606
VIMVTGDHPITAK	Oxidation (M)	1396.7384	0.73843593	112;167	P05023;P20648;P13637;P50993;Q13733;P54707	ATP1A1;ATP4A;ATP1A3;ATP1A2;ATP1A4;ATP12A	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2	no	no	0	1	0	3.4	1.62	1	1		1	2	15.099	15.099	2;3	2.9035E-20	7173	DP1145_9	145.23	109.56			254970000	2742	112;167	2556	4572;4573;4574;4575;4576	6698;6699;6700;6701;6702;6703;6704;6705	6705	84	7	9606
VINEPTAAALAYGLDK	Unmodified	1644.8723	0.87228688	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			19.524	19.524	2	8.4799E-05	15156	DP1145_8	126.95	103.72			69501000	2743	254	2557	4577	6706;6707	6707		2	9606
VIQCFAETGQVQK	Unmodified	1506.7501	0.75006325	411	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	0	1					16.439	16.439	2	0.0030395	8364	DP1145_6	123.63	81.383			0	2744	411	2558	4578	6708	6708		1	9606
VIRPLDQPSSFDATPYIK	Unmodified	2046.0786	0.078591257	566	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	2	0		1				18.697	18.697	3	8.9249E-93	14394	DP1145_7	198.98	173.75			223030000	2745	566	2559	4579	6709;6710	6709		2	9606
VISGVLQLGNIVFK	Unmodified	1485.8919	0.89190011	243	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					22.058	22.058	2	1.5364E-05	17022	DP1145_6	128.03	94.657			5674900	2746	243	2560	4580	6711	6711		1	9606
VISSVSYYTHR	Unmodified	1310.6619	0.66190017	615	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	2	0		1				15.731	15.731	3	0.020753	9733	DP1145_7	80.979	45.801			0	2747	615	2561	4581	6712	6712		1	9606
VITFANQDDYISFR	Unmodified	1687.8206	0.82058566	623	Q96G21	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4	yes	yes	0	0	0	4	0				1		20.325	20.325	2	2.2768000000000003E-45	15393	DP1145_9	174.4	111.33			27283000	2748	623	2562	4582	6713;6714;6715	6714		3	9606
VITIMQNPR	Oxidation (M)	1086.5856	0.5855641	361	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	1	0	5	0					1	15.07	15.07	2	0.0019696	7013	DP1145_10	101.28	73.402			22773000	2749	361	2563	4583	6716	6716	312	1	9606
VITIMQNPR	Unmodified	1070.5906	0.59064948	361	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	5	0					1	16.686	16.686	2	0.01255	9359	DP1145_10	95.352	76.374			25446000	2750	361	2563	4584	6717	6717		0	9606
VIVVGNPANTNCLTASK	Unmodified	1756.9142	0.91416847	262	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	2.5	1.5	1			1		17.388	17.388	2	3.3682000000000003E-35	9913	DP1145_6	166.62	129.07			24651000	2751	262	2564	4585;4586	6718;6719	6718		2	9606
VKADRDESSPYAAMLAAQDVAQR	Unmodified	2491.2125	0.21253533	359	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	2	5	0					1	18.168	18.168	3	1.9448E-05	11834	DP1145_10	112.64	80.824			0	2752	359	2565	4587	6720	6720		1	9606
VKGGGHVAQIYAIR	Unmodified	1467.831	0.83103118	357	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	1	5	0					1	15.086	15.086	3	0.0056646	7045	DP1145_10	104.59	80.882			32018000	2753	357	2566	4588	6721;6722	6722		2	9606
VKLLLQVQHASK	Unmodified	1362.8347	0.83471958	114;162	P05141;P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	1	2.5	1.5	1			1		15.323	15.323	3	4.4845E-63	6748	DP1145_6	185.25	133.96			41799000	2754	114;162	2567	4589;4590	6723;6724	6723		0	9606
VKPAPDETSFSEALLK	Unmodified	1730.9091	0.90906631	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	4	0				1		18.123	18.123	3	0.042401	11921	DP1145_9	78.244	78.244			125750000	2755	435	2568	4591	6725	6725		0	9606
VKYETELAMR	Oxidation (M)	1254.6278	0.62782285	121	P05783;CON__P05784	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	1	1	4	0				1		14.895	14.895	2	0.0042309	6840	DP1145_9	89.029	53.877			23315000	2756	121	2569	4592	6726	6726	103	0	9606
VLAEDEELYGDFEDLETGDVHK	Unmodified	2522.1337	0.13365911	476	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	1	0	1					20.946	20.946	3	0.010242	15470	DP1145_6	64.295	36.685			12541000	2757	476	2570	4593	6727	6727		1	9606
VLAFLSSVAGDALTR	Unmodified	1518.8406	0.84059282	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	1					21.575	21.575	2	6.9642E-12	16312	DP1145_6	164.48	119.33			19956000	2758	608	2571	4594	6728;6729	6728		2	9606
VLAFLVLSR	Unmodified	1016.6383	0.6382516	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1.5	0.5	1	1				21.03	21.03	2	1.9425000000000002E-25	17888	DP1145_7	171.38	113.22			93247000	2759	777	2572	4595;4596	6730;6731;6732	6731		3	9606
VLALSVETDYTFPLAEK	Unmodified	1894.9928	0.99279594	119	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	4	0				1		21.496	21.496	2	0.017324	17054	DP1145_9	77.894	46.416			32724000	2760	119	2573	4597	6733	6733		1	9606
VLATVTKPVGGDK	Unmodified	1283.7449	0.74490152	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	1	2.5	1.5	2			2		14.21	14.21	2;3	5.080700000000001E-77	5827	DP1145_9	188.27	110.59			367280000	2761	419	2574	4598;4599;4600;4601	6734;6735;6736;6737	6737		3	9606
VLDALVFHFLGFR	Unmodified	1532.8504	0.85036964	461	Q13895	BYSL	Bystin	yes	yes	0	0	0	3	0			2			23.414	23.414	2;3	2.22E-11	20655	DP1145_8	139.43	124.23			33314000	2762	461	2575	4602;4603	6738;6739;6740	6740		3	9606
VLDELTLTK	Unmodified	1030.591	0.59102664	15	CON__P13645;P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	4	0				1		18.023	18.023	2	0.023868	11748	DP1145_9	88.819	46.532		+	131300000	2763	15	2576	4604	6741	6741		0	9606
VLDLVEVLVTK	Unmodified	1226.7486	0.74858991	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	2	0.816	1	1	1			21.985	21.985	2	3.4256999999999997E-19	19316	DP1145_7	155.06	122.17			28188000	2764	655	2577	4605;4606;4607	6742;6743;6744	6743		3	9606
VLDPNTVFALVNYISFK	Unmodified	1939.0455	0.045500215	16	CON__P34955			yes	yes	0	0	0	3	0			2			25.114	25.114	2;3	1.3903E-11	22922	DP1145_8	142.39	101.01		+	4347000	2765	16	2578	4608;4609	6745;6746;6747;6748;6749	6746		5	
VLEDEEGSKDIELSDDPYDCIR	Unmodified	2596.1487	0.14865725	483	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	1	4	0				1		18.765	18.765	3	0.01256	12985	DP1145_9	73.809	52.116			10156000	2766	483	2579	4610	6750	6750		1	9606
VLEEANQAINPK	Unmodified	1324.6987	0.69867961	612	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	3	0			1			15.756	15.756	2	2.9137E-38	9033	DP1145_8	164.97	112.49			61644000	2767	612	2580	4611	6751	6751		0	9606
VLELNASDER	Unmodified	1144.5724	0.57241646	239	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	4	0				1		16.197	16.197	2	0.0037346	8913	DP1145_9	99.013	36.467			32148000	2768	239	2581	4612	6752;6753	6752		2	9606
VLEQLIVAHFPMQSR	Oxidation (M)	1782.9451	0.94507466	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					19.355	19.355	3	0.022806	13041	DP1145_6	60.937	24.491			31447000	2769	401	2582	4613	6754	6754	361	1	9606
VLEQLIVAHFPMQSR	Unmodified	1766.9502	0.95016004	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					19.955	19.955	3	0.029074	13980	DP1145_6	85.271	67.309			10007000	2770	401	2582	4614	6755	6755		1	9606
VLFDPFELDTSVTPGR	Unmodified	1791.9043	0.90431529	1	A0A0B4J2E5;Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	no	0	0	0	1	0	1					22.582	22.582	2	4.564E-07	17800	DP1145_6	160.22	115.8			5437900	2771	1	2583	4615	6756	6756		1	9606
VLFLDHPK	Unmodified	967.5491	0.54910224	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			16.34	16.34	2	0.042156	10156	DP1145_8	87.754	64.712			53065000	2772	679	2584	4616	6757	6757		0	9606
VLGELWPLFGGR	Unmodified	1342.7398	0.73975656	222	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1	0	1					22.978	22.978	2	0.02776	18396	DP1145_6	74.165	39.778			1516800	2773	222	2585	4617	6758	6758		1	9606
VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK	Unmodified	3393.8296	0.82964079	724	Q9NY61	AATF	Protein AATF	yes	yes	0	0	1	2.5	0.5		1	1			18.56	18.56	4	1.4632E-15	13644	DP1145_8	109.53	102.87			233550000	2774	724	2586	4618;4619	6759;6760;6761	6761		3	9606
VLGQSSSKPAAAATGPPPGNTSSTQK	Unmodified	2438.2401	0.24013029	686	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	1	1.5	0.5	1	1				14.237	14.237	3	0.0043665	7583	DP1145_7	55.871	24.902			11294000	2775	686	2587	4620;4621	6762;6763	6763		2	9606
VLGTEAVQDPTK	Unmodified	1256.6612	0.66123147	59	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	2	0		1				15.74	15.74	2	0.0087116	9921	DP1145_7	90.149	21.303			110680000	2776	59	2588	4622	6764	6764		1	9606
VLGTSPEAIDSAENR	Unmodified	1557.7635	0.76346471	221	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					16.653	16.653	2	0.0013444	8860	DP1145_6	114.76	88.648			26991000	2777	221	2589	4623	6765	6765		1	9606
VLIANNGIAAVK	Unmodified	1181.7132	0.71320746	438;41	O00763;Q13085	ACACB;ACACA	Acetyl-CoA carboxylase 2;Biotin carboxylase;Acetyl-CoA carboxylase 1;Biotin carboxylase	no	no	0	0	0	1	0	1					17.053	17.053	2	8.393E-43	9409	DP1145_6	174.16	119.95			1053599999.9999999	2778	41;438	2590	4624	6766;6767;6768	6767		3	9606
VLISDSLDPCCR	Unmodified	1433.6643	0.66428471	54	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	3	0			1			18.389	18.389	2	0.042896	13269	DP1145_8	92.538	54.983			0	2779	54	2591	4625	6769	6769		1	9606
VLLATLSIPITPER	Unmodified	1521.913	0.91302948	465	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	0		1				20.962	20.962	2	0.014716	17901	DP1145_7	81.92	65.082			39034000	2780	465	2592	4626	6770	6770		1	9606
VLLESEQFLTELTR	Unmodified	1676.8985	0.89850163	252	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	5	0					1	21.988	21.988	2	1.3562E-72	17421	DP1145_10	191.33	110.64			12061000	2781	252	2593	4627	6771;6772	6771		2	9606
VLLGPLSPYTIEFLR	Unmodified	1716.9814	0.98144339	766	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	4	0				1		23.203	23.203	2	1.7542E-34	19377	DP1145_9	166.29	154.13			18144000	2782	766	2594	4628	6773	6773		1	9606
VLLGVGDPK	Unmodified	896.53312	0.53311783	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			16.612	16.612	2	0.033166	10561	DP1145_8	80.438	41.22			32141000	2783	38	2595	4629	6774	6774		1	9606
VLNHFSIMQQR	Oxidation (M)	1387.7031	0.70305348	242	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	1	0	3	0			1			15.724	15.724	3	0.038423	9044	DP1145_8	62.633	22.017			0	2784	242	2596	4630	6775	6775	226	1	9606
VLNNFISNQK	Unmodified	1175.6299	0.62987176	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	0		1				16.795	16.795	2	3.3905E-60	11445	DP1145_7	189.82	154.39			242950000	2785	276	2597	4631	6776;6777;6778	6777		3	9606
VLNSYWVGEDSTYK	Unmodified	1659.7781	0.77805214	344	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	3	2	1				1	18.858	18.858	2	2.2967E-58	12296	DP1145_6	182.23	148.34			80274000	2786	344	2598	4632;4633	6779;6780	6780		2	9606
VLPLEALVTDAGEVTEAGK	Unmodified	1911.0201	0.020073325	608	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	0	2					22.971	22.971	2;3	2.4525E-07	18295	DP1145_6	129.17	107.92			19204000	2787	608	2599	4634;4635	6781;6782;6783;6784;6785	6783		5	9606
VLPPNWK	Unmodified	852.48577	0.48577371	362	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	5	0					1	16.372	16.372	2	0.017486	8960	DP1145_10	105.42	94.951			29561000	2788	362	2600	4636	6786	6786		1	9606
VLPPPAGYVPIR	Unmodified	1277.7496	0.74959297	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				18.378	18.378	2	0.0020279	14172	DP1145_7	81.548	62.768			17010000	2789	80	2601	4637	6787;6788	6788		2	9606
VLPSFWIPSLTPEAK	Unmodified	1683.9236	0.92359417	771	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	4	0				1		22.466	22.466	2	3.4798E-25	18345	DP1145_9	160.72	125.07			16033000	2790	771	2602	4638	6789;6790	6789		2	9606
VLPSITTEILK	Unmodified	1212.7329	0.73293985	238	P35232	PHB	Prohibitin	yes	yes	0	0	0	4	0				1		19.623	19.623	2	0.0249	14399	DP1145_9	76.465	56.468			120220000	2791	238	2603	4639	6791	6791		1	9606
VLPSIVNEVLK	Unmodified	1209.7333	0.7332742	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	4	0				1		20.325	20.325	2	0.002181	15278	DP1145_9	104.42	59.977			214310000	2792	646	2604	4640	6792;6793	6792		2	9606
VLQALEGLK	Unmodified	969.58588	0.58588168	256	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	5	0					1	17.948	17.948	2	0.033911	11698	DP1145_10	79.713	31.797			13560000	2793	256	2605	4641	6794	6794		1	9606
VLQSALAAIR	Unmodified	1040.6342	0.63422886	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		17.822	17.822	2	0.0067029	11680	DP1145_9	94.114	48.099			130700000	2794	435	2606	4642	6795	6795		1	9606
VLRPQVTAVAQQNQGEVPEPQDMK	Oxidation (M)	2677.3494	0.34936316	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	1	1	1	0	1					16.454	16.454	3	0.00012429	8512	DP1145_6	95.742	77.549			21920000	2795	466	2607	4643	6796	6796	437	1	9606
VLSAPPHFHFGQTNR	Unmodified	1706.8641	0.86412223	218	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	3	0			2			16.44	16.44	3;4	0.014336	10357	DP1145_8	75.589	48.249			208850000	2796	218	2608	4644;4645	6797;6798	6797		2	9606
VLSIGDGIAR	Unmodified	999.57129	0.57129425	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	3	0			1			17.523	17.523	2	2.8028E-05	11858	DP1145_8	136.75	52.394			757040000	2797	215	2609	4646	6799	6799		1	9606
VLSRPNAQELPSMYQR	Oxidation (M)	1903.9574	0.95743026	646	Q99623	PHB2	Prohibitin-2	yes	yes	0	1	1	4	0				1		16.051	16.051	3	0.037497	8695	DP1145_9	72.428	35.835			0	2798	646	2610	4647	6800	6800	557	1	9606
VLSTPDLEVR	Unmodified	1127.6186	0.61863837	314	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	2	0		1				17.599	17.599	2	0.021165	12833	DP1145_7	84.213	42.104			33967000	2799	314	2611	4648	6801	6801		1	9606
VLTELLEQER	Unmodified	1228.6663	0.66631685	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1.5	0.5	1	1				18.626	18.626	2	0.0054911	14417	DP1145_7	134.26	73.67			237260000	2800	451	2612	4649;4650	6802;6803;6804	6804		3	9606
VLTELLEQERK	Unmodified	1356.7613	0.76127986	451	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	2	0		1				17.184	17.184	2	0.00037037	12051	DP1145_7	105.2	59.194			0	2801	451	2613	4651	6805	6805		1	9606
VLTPELYAELR	Unmodified	1302.7184	0.71835242	164	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	4	0.816			1	1	1	19.56	19.56	2	6.573899999999999E-38	14180	DP1145_9	174.02	137.64			124070000	2802	164	2614	4652;4653;4654	6806;6807;6808;6809	6809		4	9606
VLTVINQTQK	Unmodified	1142.6659	0.66592292	271	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	5	0					1	15.623	15.623	2	3.516E-07	8017	DP1145_10	141.52	51.151			31823000	2803	271	2615	4655	6810	6810		1	9606
VLVLAPTR	Unmodified	867.55419	0.55418762	652	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	2	0		1				16.645	16.645	2	0.038035	11238	DP1145_7	89.55	55.999			74758000	2804	652	2616	4656	6811	6811		0	9606
VMQQQQQTTQQQLPQK	Oxidation (M)	1956.9687	0.96872323	498	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	1	0	2	0		1				14.03	14.03	2	3.1268E-49	7304	DP1145_7	176.78	140.49			10728000	2805	498	2617	4657	6812	6812	462	0	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	Oxidation (M)	3301.5555	0.55546913	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	0	2.4	1.02	1	2	1	1		17.752	17.752	3;4	1.1787E-21	11389	DP1145_9	125.35	98.754			3606299999.9999995	2806	474	2618	4658;4659;4660;4661;4662	6813;6814;6815;6816;6817;6818;6819;6820;6821	6819	449	9	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK	Unmodified	3285.5606	0.56055451	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	2.75	0.829		2	1	1		18.219	18.219	3;4	1.3383E-76	13631	DP1145_7	177.79	158.62			1647599999.9999998	2807	474	2618	4663;4664;4665;4666	6822;6823;6824;6825;6826;6827;6828;6829;6830;6831;6832;6833	6822		12	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	Oxidation (M)	3429.6504	0.65043215	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	1	1	3.12	1.36	1	2	2	1	2	16.956	16.956	3;4	1.5736E-31	10990	DP1145_8	140.27	105.31			7954199999.999999	2808	474	2619	4667;4668;4669;4670;4671;4672;4673;4674	6834;6835;6836;6837;6838;6839;6840;6841;6842;6843;6844;6845;6846;6847;6848;6849;6850	6846	449	17	9606
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKK	Unmodified	3413.6555	0.65551752	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	1	3.33	1.11		2	1	2	1	17.441	17.441	3;4	3.9281000000000003E-41	12372	DP1145_7	151.02	124.55			4094399999.9999995	2809	474	2619	4675;4676;4677;4678;4679;4680	6851;6852;6853;6854;6855;6856;6857;6858;6859;6860;6861;6862;6863;6864;6865;6866;6867;6868;6869;6870	6854		20	9606
VMSQEIQEQLHK	Unmodified	1468.7344	0.73441319	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.017	16.017	3	2.0401E-05	7760	DP1145_6	133.42	91.177			0	2810	466	2620	4681	6871	6871		1	9606
VNDTIQIDLETGK	Unmodified	1444.7409	0.74093835	367	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	4	0				1		18.423	18.423	2	6.5834E-38	12489	DP1145_9	196.48	161.79			28640000	2811	367	2621	4682	6872	6872		0	9606
VNFLPEIITLSK	Unmodified	1372.7966	0.79660274	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					22.021	22.021	2	1.419E-07	16961	DP1145_6	131.09	104.04			8595500	2812	466	2622	4683	6873;6874	6874		2	9606
VNILEVASGAVLR	Unmodified	1339.7823	0.78234966	432	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	0	1					21.52	21.52	2	4.4978E-33	16201	DP1145_6	169.21	124.89			25348000	2813	432	2623	4684	6875;6876	6876		2	9606
VNLESMHTDIK	Acetyl (Protein N-term);Oxidation (M)	1343.6391	0.63911582	753	Q9UKI9	POU2F3	POU domain, class 2, transcription factor 3	yes	yes	1	1	0	3	0			1			17.623	17.623	2	0.033402	12284	DP1145_8	50.04	20.879			50441000	2814	753	2624	4685	6877	6877	623	1	9606
VNNADDFPNLFR	Unmodified	1420.6735	0.67352749	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	0	1					20.055	20.055	2	4.8302E-209	14037	DP1145_6	251.56	222.83			206570000	2815	438	2625	4686	6878;6879;6880	6878		3	9606
VNPILGPQMFQPILPYVFK	Oxidation (M)	2216.2068	0.20676866	747	Q9UI26	IPO11	Importin-11	yes	yes	0	1	0	2	0		1				23.07	23.07	2	0.00061084	20906	DP1145_7	116.54	94.981			2696500	2816	747	2626	4687	6881	6881	617	1	9606
VPAPVTMDSFFFGCELSGHTR	Oxidation (M)	2370.0773	0.077287403	81	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	1	0	5	0					1	19.934	19.934	3	0.00031198	14683	DP1145_10	106.39	81.493			62493000	2817	81	2627	4688	6882	6882	65	1	9606
VPEPIDIGQALQK	Unmodified	1406.7769	0.77692993	795				yes	yes	0	0	0	4	0				1		20.916	20.916	2	0.013441	16633	DP1145_9	83.948	38.58	+		12119000	2818	795	2628	4689	6883	6883		1	9606
VPGLPTPIENMILR	Unmodified	1548.8698	0.86978446	542	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	0	1					21.794	21.794	2	0.018143	16638	DP1145_6	79.07	62.54			7335300	2819	542	2629	4690	6884;6885	6884		2	9606
VPIIVPIMMLAIK	Unmodified	1436.8863	0.88628614	28	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	2	0		1				24.099	24.099	2	0.0015696	22372	DP1145_7	109.48	71.751			4890600	2820	28	2630	4691	6886;6887;6888	6887		3	9606
VPIIVPIMMLAIK	2 Oxidation (M)	1468.8761	0.87611539	28	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	2	0	2	0		1				20.763	20.763	2	0.026342	17435	DP1145_7	56.563	33.684			9613000	2821	28	2630	4692	6889	6889	20;21	0	9606
VPIIVPIMMLAIK	Oxidation (M)	1452.8812	0.88120076	28	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	1	0	2	0		1				22.821	22.821	2	0.042562	20611	DP1145_7	68.224	40.359			4726600	2822	28	2630	4693	6890	6890	20;21	0	9606
VPLAFAMVK	Oxidation (M)	990.55722	0.55722409	84	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					17.854	17.854	2	0.021884	10703	DP1145_6	77.741	49.318			12733000	2823	84	2631	4694	6891	6891	67	1	9606
VPLAIVNK	Unmodified	852.54329	0.54328858	466	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	0	1					16.229	16.229	2	0.0083954	8035	DP1145_6	101.21	52.451			29232000	2824	466	2632	4695	6892	6892		1	9606
VPLLLEEQGVVDYFLR	Unmodified	1889.0299	0.02985015	185	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	3	0			2			24.022	24.022	2;3	2.2514999999999998E-278	21471	DP1145_8	270.67	213.5			20364000	2825	185	2633	4696;4697	6893;6894;6895	6893		3	9606
VPLSEFDFSWSK	Unmodified	1440.6925	0.6925316	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3.33	1.25		1	1		1	21.223	21.223	2	3.1809E-16	18274	DP1145_7	148.56	121.67			221420000	2826	719	2634	4698;4699;4700	6896;6897;6898;6899	6897		4	9606
VPPAINQFTQALDR	Unmodified	1568.8311	0.83109076	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				2		20.024	20.024	2;3	1.1307999999999999E-72	14768	DP1145_9	192.44	161.87			478410000	2827	366	2635	4701;4702	6900;6901;6902;6903	6901		4	9606
VPPFVDLNVNSNEGK	Unmodified	1627.8206	0.82058566	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	2	0		1				19.03	19.03	2	0.0020866	15010	DP1145_7	111.52	80.238			68740000	2828	719	2636	4703	6904;6905	6904		2	9606
VPPPPPIAR	Unmodified	942.56509	0.56508666	133	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	4	0				1		15.318	15.318	2	0.004916	7560	DP1145_9	114.19	66.443			266230000	2829	133	2637	4704	6906;6907	6906		2	9606
VPSLSVPWLQDR	Unmodified	1395.751	0.75104953	397	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	0	0	4	0				1		21.11	21.11	2	0.0091459	16299	DP1145_9	104.42	65.119			8135900	2830	397	2638	4705	6908	6908		1	9606
VQAERPDTMLGVVCGALHVADVSLR	Oxidation (M)	2708.3738	0.37380377	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	1	1	0	2					19.655	19.655	3;4	3.4235E-05	13454	DP1145_6	82.849	62.423			280780000	2831	438	2639	4706;4707	6909;6910;6911	6909	416	3	9606
VQALEEANNDLENK	Unmodified	1585.7584	0.75837933	17	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1.5	0.5	1	1				16.662	16.662	2	9.3996E-88	8747	DP1145_6	201.46	168.08		+	137910000	2832	17	2640	4708;4709	6912;6913	6912		2	9606
VQENSAYICSR	Unmodified	1325.6034	0.60339901	777	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1	0	1					15.145	15.145	2	0.041335	6548	DP1145_6	70.399	46.177			29907000	2833	777	2641	4710	6914	6914		1	9606
VQNNLYHHCVINK	Unmodified	1637.8096	0.80964381	431	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	1	0	1					14.116	14.116	3	0.0083804	4993	DP1145_6	78.548	40.387			594590	2834	431	2642	4711	6915	6915		1	9606
VQQAELHTGSLPR	Unmodified	1434.7579	0.75792582	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2.25	1.64	2	1			1	15.04	15.04	2;3	1.0083999999999999E-32	6412	DP1145_6	138.63	113.75			2401100000	2835	438	2643	4712;4713;4714;4715	6916;6917;6918;6919;6920	6919		5	9606
VQQTVQDLFGR	Unmodified	1289.6728	0.67279921	254	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	3	0			1			18.623	18.623	2	0.0021912	13789	DP1145_8	114.89	58.084			155580000	2836	254	2644	4716	6921	6921		1	9606
VQSLQATFGTFESILR	Unmodified	1795.9468	0.9468488	426	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	3	0			1			22.788	22.788	2	0.00045951	19826	DP1145_8	120.03	75.47			9845400	2837	426	2645	4717	6922	6922		1	9606
VREEEIEVDSR	Unmodified	1359.663	0.66302238	479	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	1	2.5	0.5		1	1			14.632	14.632	3	0.00010841	8155	DP1145_7	111.52	71.794			29539000	2838	479	2646	4718;4719	6923;6924	6923		2	9606
VREWYGYHFPELVK	Unmodified	1821.9202	0.92024012	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	1	3	0			1			18.957	18.957	4	0.01984	14200	DP1145_8	67.326	40.063			16016000	2839	38	2647	4720	6925	6925		1	9606
VRPDYTAQNLDHGK	Unmodified	1612.7958	0.79576789	405	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	1	5	0					1	14.134	14.134	3	0.0078611	5612	DP1145_10	97.223	85.432			2773100	2840	405	2648	4721	6926;6927	6926		2	9606
VSALNSVHCEHVEDEGESR	Unmodified	2152.9444	0.94435897	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1.8	0.748	2	2	1			14.832	14.832	3;4	7.3754E-38	5976	DP1145_6	169.25	140.3			1696299999.9999998	2841	438	2649	4722;4723;4724;4725;4726	6928;6929;6930;6931;6932;6933;6934;6935;6936;6937;6938	6932		11	9606
VSALSVVR	Unmodified	829.50215	0.50215205	750	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	3	0			1			16.105	16.105	2	0.0014313	9677	DP1145_8	111.65	0.61279			45414000	2842	750	2650	4727	6939	6939		1	9606
VSFELFADK	Unmodified	1054.5335	0.53351176	384	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	1	0	1					19.854	19.854	2	0.0053071	13856	DP1145_6	98.033	63.225			10558000	2843	384	2651	4728	6940	6940		1	9606
VSFGGHLRPELFDENLPPNTPLKR	Unmodified	2732.4398	0.43983315	276	P46013	MKI67	Antigen KI-67	yes	yes	0	0	2	2	0		1				18.596	18.596	5	0.043624	14255	DP1145_7	32.548	15.96			39321000	2844	276	2652	4729	6941	6941		0	9606
VSGVECMIIANDATVK	Oxidation (M)	1721.8328	0.8328066	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	1	0	2.5	0.5		1	1			17.604	17.604	2	1.3865E-46	12130	DP1145_8	174.46	137.88			1171700000	2845	700	2653	4730;4731	6942;6943;6944;6945;6946	6943	590	5	9606
VSGVECMIIANDATVK	Unmodified	1705.8379	0.83789198	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	0			1			19.226	19.226	2	6.5525E-25	14393	DP1145_8	155.88	116.01			505580000	2846	700	2653	4732	6947	6947		1	9606
VSISEGDDKIEYR	Unmodified	1509.7311	0.73110195	200	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	1	4	0				1		16.197	16.197	3	0.0044815	9073	DP1145_9	127.56	75.56			205280000	2847	200	2654	4733	6948;6949	6949		2	9606
VSIVNQYGK	Unmodified	1006.5447	0.54474515	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	3	0			1			15.656	15.656	2	1.2271E-10	8861	DP1145_8	151.27	86.231			309370000	2848	679	2655	4734	6950	6950		1	9606
VSLHSQQNLMTVSNLGVIFGPTLMR	2 Oxidation (M)	2773.4255	0.42550499	5	A6NI28	ARHGAP42	Rho GTPase-activating protein 42	yes	yes	0	2	0	5	0					1	17.547	17.547	3	0.023429	11038	DP1145_10	42.612	33.046			258510000	2849	5	2656	4735	6951	6951	0;1	1	9606
VSLLNEQFLPLIR	Unmodified	1540.8977	0.89771377	689	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	0	1					22.359	22.359	2	5.4314999999999996E-185	17490	DP1145_6	248.09	215.36			11328000	2850	689	2657	4736	6952;6953	6953		2	9606
VTAIDFR	Unmodified	820.4443	0.44430282	750	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	3	0			1			16.64	16.64	2	0.030746	11059	DP1145_8	98.418	38.06			67272000	2851	750	2658	4737	6954	6954		1	9606
VTAIHIDPATHR	Unmodified	1329.7153	0.71533272	290	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	0	1					14.557	14.557	3	0.0001185	5559	DP1145_6	126.66	84.416			0	2852	290	2659	4738	6955	6955		1	9606
VTEDTSSVLR	Unmodified	1105.5615	0.56151742	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	1.12	1	1	1	1		15.404	15.404	2	0.00012706	9284	DP1145_7	133.23	72.553			3016199999.9999995	2853	115	2660	4739;4740;4741;4742	6956;6957;6958;6959;6960;6961;6962;6963	6957		8	9606
VTFGLNR	Unmodified	805.44464	0.44463717	474	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	3	1.41	1	1	1	1	1	16.729	16.729	2	1.4683E-10	10590	DP1145_8	149.11	83.784			9843300000	2854	474	2661	4743;4744;4745;4746;4747	6964;6965;6966;6967;6968;6969	6967		6	9606
VTGEADVEFATHEEAVAAMSK	Oxidation (M)	2207.0052	0.005227897	310	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	3.5	0.5			1	1		17.84	17.84	3	0.021075	11701	DP1145_9	51.348	18.837			111520000	2855	310	2662	4748;4749	6970;6971	6971	285	2	9606
VTGQHPEVPPAFWNNAFTLLSAVSLPR	Unmodified	2947.5345	0.53446182	666	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	3	0			1			23.756	23.756	3	0.0021305	21074	DP1145_8	61.436	45.329			6985900	2856	666	2663	4750	6972	6972		0	9606
VTHAVVTVPAYFNDAQR	Unmodified	1886.9639	0.96389585	153	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	3	0			1			17.923	17.923	3	0.0028023	12618	DP1145_8	84.859	75.676			164450000	2857	153	2664	4751	6973	6973		1	9606
VTIAQGGVLPNIQAVLLPK	Unmodified	1930.1615	0.16153303	146	Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8	HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1	no	no	0	0	0	2.5	1.5	1			1		22.102	22.102	2	0.0019538	17813	DP1145_9	112.02	84.347			12406000	2858	146	2665	4752;4753	6974;6975;6976	6975		2	9606
VTKNEEPSEEEIDAPKPK	Unmodified	2039.0059	0.005879824	709	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	2	2.5	1.5	1			1		14.177	14.177	3;4	3.473E-14	5185	DP1145_6	138.05	113.27			2378900	2859	709	2666	4754;4755	6977;6978	6977		1	9606
VTQDELKEVFEDAAEIR	Unmodified	1990.9848	0.98475045	194	P19338	NCL	Nucleolin	yes	yes	0	0	1	2.33	0.471		2	1			21.228	21.228	2;3	0	18135	DP1145_7	326.57	269.42			749700000	2860	194	2667	4756;4757;4758	6979;6980;6981;6982;6983	6981		5	9606
VVAEPVELAQEFR	Unmodified	1485.7827	0.78274359	78	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	2	0		1				19.964	19.964	2	0.045565	16023	DP1145_7	68.847	40.642			178110000	2861	78	2668	4759	6984	6984		1	9606
VVDALGNAIDGK	Unmodified	1170.6245	0.62445203	215	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			17.425	17.425	2	5.7717E-56	11694	DP1145_8	187.97	141.55			625920000	2862	215	2669	4760;4761	6985;6986;6987	6987		3	9606
VVEEAPSIFLDAETR	Unmodified	1674.8465	0.84646606	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1.67	0.943	2		1			20.024	20.024	2	2.2121E-32	13975	DP1145_6	197.3	138.71			844460000	2863	115	2670	4762;4763;4764	6988;6989;6990	6988		3	9606
VVEEAPSIFLDAETRR	Unmodified	1830.9476	0.94757708	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.813	18.813	3	0.015539	13939	DP1145_8	127.32	100.54			302870000	2864	115	2671	4765	6991	6991		1	9606
VVEIAPAAHLDPQLR	Unmodified	1627.9046	0.90459006	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.2	1.17	2	1	1	1		17.788	17.788	2;3	1.8795E-11	10676	DP1145_6	140.82	101.31			948800000	2865	158	2672	4766;4767;4768;4769;4770	6992;6993;6994;6995;6996;6997;6998	6992		7	9606
VVFQEFR	Unmodified	923.4865	0.48650199	243	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	0	1					17.754	17.754	2	0.0025369	10568	DP1145_6	111.28	74.691			40652000	2866	243	2673	4771	6999	6999		1	9606
VVFVFGPDK	Unmodified	1006.5488	0.54876789	227	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	5	0					1	19.134	19.134	2	0.033911	13437	DP1145_10	79.713	36.798			12823000	2867	227	2674	4772	7000	7000		1	9606
VVHSYEELEENYTR	Unmodified	1766.8111	0.81114318	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2.71	1.03	1	2	2	2		17.177	17.177	2;3	5.6757E-166	12007	DP1145_7	268.14	268.14			3161699999.9999995	2868	158	2675	4773;4774;4775;4776;4777;4778;4779	7001;7002;7003;7004;7005;7006;7007;7008;7009	7002		7	9606
VVLAYEPVWAIGTGK	Unmodified	1601.8817	0.88172935	334	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	5	0					1	21.105	21.105	2	0.0021027	16208	DP1145_10	111.5	74.969			15741000	2869	334	2676	4780	7010	7010		1	9606
VVLLGEFLHPCEDDIVCK	Unmodified	2142.0489	0.048947388	723	Q9NY12	GAR1	H/ACA ribonucleoprotein complex subunit 1	yes	yes	0	0	0	5	0					1	20.852	20.852	3	0.0049755	15838	DP1145_10	102.63	81.185			32549000	2870	723	2677	4781	7011	7011		1	9606
VVLLHGPPGTGK	Unmodified	1173.687	0.68699271	500	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	3	0			1			15.451	15.451	2	2.9867E-09	8594	DP1145_8	128.35	91.901			17176000	2871	500	2678	4782	7012	7012		0	9606
VVLVLAGR	Unmodified	825.54362	0.54362294	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	3	2	1				1	17.45	17.45	2	6.1386000000000004E-24	10764	DP1145_10	170.96	84.445			506610000	2872	345	2679	4783;4784	7013;7014;7015	7013		2	9606
VVNIVPVIAK	Unmodified	1050.6801	0.68011642	743	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	3	0			1			18.323	18.323	2	4.438E-06	13133	DP1145_8	117.4	89.516			10094000	2873	743	2680	4785	7016	7016		0	9606
VVNPLFEK	Unmodified	944.53312	0.53311783	366	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	4	0				1		17.522	17.522	2	0.037571	10921	DP1145_9	89.752	39.728			212160000	2874	366	2681	4786	7017	7017		0	9606
VVPSDLYPLVLGFLR	Unmodified	1686.9709	0.97087871	479	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2.5	0.5		2	2			24.715	24.715	2;3	0.0052647	23105	DP1145_7	105.98	72.785			20718000	2875	479	2682	4787;4788;4789;4790	7018;7019;7020;7021;7022;7023;7024	7019		7	9606
VVQGDIGEANEDVTQIVEILHSGPSK	Unmodified	2733.3821	0.38210308	570	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	2	0		1				21.768	21.768	3	1.1816E-08	18893	DP1145_7	117.51	92.089			40662000	2876	570	2683	4791	7025;7026	7025		2	9606
VVQMLGSLGGQINK	Oxidation (M)	1458.7864	0.78644876	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	1	0	1					17.053	17.053	2	0.0087775	9535	DP1145_6	82.171	48.295			54188000	2877	401	2684	4792	7027	7027	362	1	9606
VVSLSEYR	Unmodified	951.50255	0.50254598	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			16.44	16.44	2	0.00092401	10170	DP1145_8	129.68	77.383			148590000	2878	38	2685	4793	7028	7028		1	9606
VVSNLPAITMEEVAPVSVSDAALLAPEEIKEK	Oxidation (M)	3364.7687	0.76873959	37	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	1	1	2	0		1				20.962	20.962	3	1.0466E-12	17781	DP1145_7	96.61	90.831			109290000	2879	37	2686	4794	7029	7029	26	1	9606
VVTTNYKPVANHQYNIEYER	Unmodified	2437.2026	0.20262257	170	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	4	0				2		16.149	16.149	3;4	1.4636E-12	8862	DP1145_9	139.39	114.71			410480000	2880	170	2687	4795;4796	7030;7031;7032;7033	7032		4	9606
VVVLNCEPSKER	Unmodified	1428.7395	0.73949856	475	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	1	1	0	1					14.544	14.544	3	0.045988	5666	DP1145_6	80.69	43.346			2535300	2881	475	2688	4797	7034	7034		0	9606
VVYASATGASEPR	Unmodified	1306.6517	0.65172941	2	Q9Y2G9;A3KN83	SBNO2;SBNO1	Protein strawberry notch homolog 2;Protein strawberry notch homolog 1	yes	no	0	0	0	1	0	1					14.946	14.946	2	0.00064103	6017	DP1145_6	115.23	78.785			7447000	2882	2	2689	4798	7035;7036	7035		2	9606
VWDDGIIDPADTR	Unmodified	1471.6943	0.69432251	700	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	3	1.41	1	1	1	1	1	19.534	19.534	2	2.123E-86	14865	DP1145_8	206.49	134.24			2321100000	2883	700	2690	4799;4800;4801;4802;4803	7037;7038;7039;7040;7041;7042;7043;7044	7042		8	9606
VWLDPNETNEIANANSR	Unmodified	1941.9181	0.91806787	408	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	4.5	0.5				1	1	18.997	18.997	2	5.0677000000000005E-64	13290	DP1145_9	187.44	135.6			67842000	2884	408	2691	4804;4805	7045;7046	7046		1	9606
VYFLPITPHYVTQVIR	Unmodified	1945.0826	0.082554423	221	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	0	1					20.572	20.572	3	0.040723	14818	DP1145_6	62.378	45.627			5911000	2885	221	2692	4806	7047	7047		0	9606
VYNVTQHAVGIVVNK	Unmodified	1639.9046	0.90459006	279	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	5	0					2	16.969	16.969	2;3	0.0014879	9977	DP1145_10	126.09	104.73			277370000	2886	279	2693	4807;4808	7048;7049	7048		2	9606
VYNYNHLMPTR	Oxidation (M)	1422.6714	0.671419	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	1	0	5	0					2	15.18	15.18	2;3	0.0024311	7201	DP1145_10	109.79	83.04			309060000	2887	345	2694	4809;4810	7050;7051;7052	7052	309	3	9606
VYNYNHLMPTR	Unmodified	1406.6765	0.67650438	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	16.628	16.628	2	0.0051567	9425	DP1145_10	123.86	75.58			0	2888	345	2694	4811	7053	7053		1	9606
VYSTALSSFLTK	Unmodified	1315.7024	0.702368	655	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1	0	1					19.931	19.931	2	0.01133	13879	DP1145_6	108.47	66.183			0	2889	655	2695	4812	7054	7054		1	9606
WDEMNILATYHPADKDYGLMK	2 Oxidation (M)	2542.1508	0.15084628	268	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	2	1	4	0				1		18.723	18.723	4	0.026491	12897	DP1145_9	49.188	34.826			326720000	2890	268	2696	4813	7055	7055	243;244	1	9606
WDEMNILATYHPADKDYGLMK	Oxidation (M)	2526.1559	0.15593165	268	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	1	1	4	0				2		19.523	19.523	3;4	3.1376000000000002E-30	13732	DP1145_9	156.29	135.54			172510000	2891	268	2696	4814;4815	7056;7057;7058	7057	243;244	3	9606
WDQSTFLGR	Unmodified	1108.5302	0.53015772	670	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	4	0				1		18.523	18.523	2	9.6029E-25	12499	DP1145_9	168.23	0			12135000	2892	670	2697	4816	7059	7059		1	9606
WDQTADQTPGATPK	Unmodified	1514.7001	0.70013617	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	0		1				15.424	15.424	2	8.6222E-44	9262	DP1145_7	176.18	140.64			0	2893	80	2698	4817	7060	7060		1	9606
WEAERDDWLHNR	Unmodified	1625.7335	0.73350198	421	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	2	0		1				16.798	16.798	3	0.014748	11461	DP1145_7	96.229	62.956			45929000	2894	421	2699	4818	7061	7061		0	9606
WELLQQVDTSTR	Unmodified	1474.7416	0.74160705	11	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	2	0		1				19.663	19.663	2	2.4536E-23	15956	DP1145_7	158.47	110.28		+	162130000	2895	11	2700	4819	7062;7063	7062		2	9606
WFEENASQSTVK	Unmodified	1424.6572	0.65720872	435	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	4	0				1		16.923	16.923	2	0.035667	10159	DP1145_9	79.07	40.32			148340000	2896	435	2701	4820	7064	7064		0	9606
WGSNELPAEEGK	Unmodified	1315.6044	0.60444487	177	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	2	0		1				16.672	16.672	2	0.0064903	11280	DP1145_7	100.82	57.955			17892000	2897	177	2702	4821	7065	7065		0	9606
WMLAGRPHPTQK	Unmodified	1420.7398	0.73977334	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					14.946	14.946	2;3	5.3201999999999995E-22	6073	DP1145_6	158.47	123.29			76177000	2898	438	2703	4822;4823	7066;7067	7066		2	9606
WPVAGQIR	Unmodified	925.51339	0.51338544	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					17.253	17.253	2	0.0035918	9683	DP1145_6	106.76	73.023			66885000	2899	401	2704	4824	7068	7068		0	9606
WQNNLLPSR	Unmodified	1126.5883	0.5883413	356	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	5	0					2	17.829	17.829	2	4.9223E-18	11258	DP1145_10	158.07	112.99			0	2900	356	2705	4825;4826	7069;7070	7069		2	9606
WVEISNEVR	Unmodified	1130.572	0.57202253	184	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	2	0		1				17.499	17.499	2	0.0046948	12655	DP1145_7	113.71	50.989			48722000	2901	184	2706	4827	7071;7072;7073	7072		3	9606
WVGGPEIELIAIATGGR	Unmodified	1737.9414	0.94136949	288	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	3	0			1			23.414	23.414	2	7.7112E-12	20593	DP1145_8	161.25	145.5			8798000	2902	288	2707	4828	7074	7074		1	9606
YAICSALAASALPALVMSK	Oxidation (M)	1952.0111	0.011105318	250	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	3	0			1			21.424	21.424	2	0.002461	17580	DP1145_8	87.363	64.137			32219000	2903	250	2708	4829	7075	7075	230	1	9606
YATALYSAASK	Unmodified	1144.5764	0.57643921	286	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	5	0					1	16.106	16.106	2	0.00068849	8611	DP1145_10	123.63	88.007			32512000	2904	286	2709	4830	7076;7077	7076		2	9606
YAVDDVPFSIPAASEIADLSNIINK	Unmodified	2661.3538	0.35376306	678	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	3	0			1			24.282	24.282	3	5.2266E-06	21845	DP1145_8	95.996	77.744			2451500	2905	678	2710	4831	7078;7079;7080	7079		3	9606
YAVQLVEMLDMSVPAVAKLR	2 Oxidation (M)	2264.1909	0.1908606	568	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	2	1	4	0				1		22.138	22.138	3	0.039587	17765	DP1145_9	41.412	17.56			74497000	2906	568	2711	4832	7081	7081	496;497	0	9606
YCAQDAFFQVK	Unmodified	1375.6231	0.62307182	437	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	4	0				1		18.945	18.945	2	1.128E-05	13274	DP1145_9	135.71	94.988			12550000	2907	437	2712	4833	7082	7082		1	9606
YDAFGEDSSSAMGVENR	Oxidation (M)	1849.7425	0.74247127	768	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	1	0	3	0			1			17.193	17.193	2	0.038639	11402	DP1145_8	85.672	72.692			0	2908	768	2713	4834	7083	7083	634	1	9606
YDSAPATDGSGTALGWTVAWK	Unmodified	2153.0065	0.006548526	23	CON__Streptavidin			yes	yes	0	0	0	4	1.41	1	2	1	1	8	22.813	22.813	2;3	0	16168	DP1145_10	275.69	234.21		+	2736900000	2909	23	2714	4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847	7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106;7107;7108;7109;7110;7111;7112	7088		29	
YEELQITAGR	Unmodified	1178.5932	0.5931519	11;108	P04264;CON__P04264;P04259	KRT1;KRT6B	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6B	no	no	0	0	0	1	0	1					17.153	17.153	2	0.0058848	9690	DP1145_6	94.692	61.799		+	408680000	2910	11;108	2715	4848	7113	7113		1	9606
YEELQVTVGR	Unmodified	1192.6088	0.60880197	18	P35908;CON__P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					17.353	17.353	2	1.4596E-10	9712	DP1145_6	127.68	68.864		+	13731000	2911	18	2716	4849	7114	7114		0	9606
YELDYIL	Unmodified	927.45895	0.45894983	80	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	0	1					22.867	22.867	1	0.026586	18177	DP1145_6	85.306	51.791			2117200	2912	80	2717	4850	7115	7115		0	9606
YESLTDPSKLDSGK	Unmodified	1538.7464	0.74641766	136;132;521	P07900;P08238;Q58FF7;Q58FF8	HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2	no	no	0	0	1	2	0		2				16.175	16.175	2;3	3.8242E-33	10455	DP1145_7	168.83	122.37			185420000	2913	132;136;521	2718	4851;4852	7116;7117	7116		2	9606
YFHPPAHLQAK	Unmodified	1307.6775	0.67749065	710	Q9NR56;Q5VZF2	MBNL1;MBNL2	Muscleblind-like protein 1;Muscleblind-like protein 2	yes	no	0	0	0	4	0				1		14.574	14.574	3	0.035135	6445	DP1145_9	65.157	12.077			15449000	2914	710	2719	4853	7118	7118		0	9606
YFPTQALNFAFK	Unmodified	1445.7343	0.73433683	114;162	P05141;Q9H0C2;P12236	SLC25A5;SLC25A31;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	no	no	0	0	0	2.5	1.5	1			1		21.348	21.348	2	2.0978E-05	16005	DP1145_6	126.24	89.925			343430000	2915	114;162	2720	4854;4855	7119;7120;7121;7122;7123;7124;7125	7120		7	9606
YGALALQEIFDGIQPK	Unmodified	1761.9301	0.93013611	322	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	1.5	0.5	1	1				22.697	22.697	2	7.021E-25	18003	DP1145_6	155.33	124.61			36907000	2916	322	2721	4856;4857	7126;7127;7128	7126		3	9606
YGDGGSTFQSTTGHCVHMR	Oxidation (M)	2112.8742	0.87417092	232	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	3.5	0.5			1	1		14.378	14.378	4	0.0020475	6904	DP1145_8	79.92	64.991			108880000	2917	232	2722	4858;4859	7129;7130	7129	220	1	9606
YGDSEFTVQSTTGHCVHMR	Unmodified	2210.9473	0.94733586	310	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	4	0				1		16.149	16.149	4	0.0039176	8895	DP1145_9	75.445	67.359			47655000	2918	310	2723	4860	7131	7131		1	9606
YGFLWPGLNVPLMK	Oxidation (M)	1649.864	0.8639708	403	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	1	0	4	0				1		22.641	22.641	2	0.0089234	18632	DP1145_9	81.972	53.015			3447500	2919	403	2724	4861	7132	7132	363	1	9606
YGIICMEDLIHEIYTVGK	Oxidation (M)	2169.0486	0.048613037	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	0	4	0				1		21.21	21.21	3	0.0030682	16548	DP1145_9	95.873	83.593			50755000	2920	191	2725	4862	7133	7133	190	1	9606
YGIICMEDLIHEIYTVGK	Unmodified	2153.0537	0.053698415	191	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	4	0				1		23.377	23.377	3	0.0041745	19661	DP1145_9	97.214	63.12			8145900	2921	191	2725	4863	7134	7134		1	9606
YGINTDPPK	Unmodified	1003.4975	0.4974606	774	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	5	0					1	15.377	15.377	2	0.0027579	7472	DP1145_10	127.46	90.368			28928000	2922	774	2726	4864	7135;7136	7135		2	9606
YGLIFHSTFIGR	Unmodified	1409.7456	0.74557022	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	3	0			1			19.229	19.229	3	0.00098251	14625	DP1145_8	102.95	64.172			31194000	2923	38	2727	4865	7137	7137		1	9606
YGPPPSYPNLK	Unmodified	1231.6237	0.62372375	452	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2	0		1				16.899	16.899	2	0.02902	11623	DP1145_7	56.432	10.042			20290000	2924	452	2728	4866	7138	7138		1	9606
YGSDIVPFSK	Unmodified	1111.555	0.55497548	165	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	2	0		1				18.099	18.099	2	0.001417	13460	DP1145_7	79.148	46.256			29514000	2925	165	2729	4867	7139	7139		0	9606
YHTSQSGDEMTSLSEYVSR	Oxidation (M)	2191.9328	0.93279124	136	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	1	0	2	0		2				16.743	16.743	2;3	0.033818	11455	DP1145_7	50.916	41.869			162260000	2926	136	2730	4868;4869	7140;7141	7140	132	2	9606
YHYELLNYIDLPVLAIHGK	Unmodified	2270.2099	0.20993978	719	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	3	0			1			21.818	21.818	3	2.7294E-06	18356	DP1145_8	128.79	112.3			56306000	2927	719	2731	4870	7142	7142		1	9606
YICDNQDTISSK	Unmodified	1442.6348	0.63475872	10	CON__P02769			yes	yes	0	0	0	4.5	0.5				1	1	15.178	15.178	2	0.017229	7215	DP1145_10	79.07	29.037		+	50185000	2928	10	2732	4871;4872	7143;7144	7143		2	
YIDQEELNK	Unmodified	1150.5506	0.55061839	136;132;521	P07900;Q14568;P08238;Q58FF8	HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	3	1		1		1		15.466	15.466	2	6.9047E-35	9419	DP1145_7	178.99	111.82			168920000	2929	132;136;521	2733	4873;4874	7145;7146;7147	7145		2	9606
YIFTMLSSLAR	Oxidation (M)	1316.6799	0.67985842	157	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	0	2	0		1				20.165	20.165	2	0.012017	16742	DP1145_7	79.986	44.63			16731000	2930	157	2734	4875	7148	7148	158	1	9606
YIQNLQGLFALPFGR	Unmodified	1735.941	0.94097556	472	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	3	0			1			23.2	23.2	2	3.6698E-06	20254	DP1145_8	132.78	97.256			0	2931	472	2735	4876	7149	7149		1	9606
YIYDSAFHPDTGEK	Unmodified	1641.7311	0.73110195	696	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	4	0				1		17.223	17.223	3	1.1523E-62	10559	DP1145_9	181.98	147.23			69028000	2932	696	2736	4877	7150	7150		0	9606
YLAEVATGEK	Unmodified	1079.5499	0.5498901	350	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	2.5	1.5	1			1		15.637	15.637	2	0.018525	8042	DP1145_9	86.136	49.375			20901000	2933	350	2737	4878;4879	7151;7152	7152		2	9606
YLDGLTAER	Unmodified	1036.5189	0.51892433	18	P35908;CON__P35908;CON__P35908v2	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	1	0	1					17.217	17.217	2	3.4421E-17	9575	DP1145_6	162.25	82.799		+	20622000	2934	18	2738	4880	7153	7153		1	9606
YLFIFSVANMR	Oxidation (M)	1375.6958	0.69584284	752	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	1	0	4	0				1		21.496	21.496	2	0.010023	16952	DP1145_9	88.177	59.48			20668000	2935	752	2739	4881	7154	7154	622	0	9606
YLFLNAIANQLR	Unmodified	1434.7983	0.79833407	3	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1	0	1					22.077	22.077	2	0.036465	17058	DP1145_6	69.598	48.135			1460200	2936	3	2740	4882	7155	7155		1	9606
YLGYLEQLLR	Unmodified	1266.6972	0.69722304	7	CON__P02662			yes	yes	0	0	0	2.33	1.25	1	1		1		21.988	21.988	2	0.0050637	17722	DP1145_9	111.95	71.169		+	83621000	2937	7	2741	4883;4884;4885	7156;7157;7158	7158		2	
YLKDVTLQK	Unmodified	1106.6336	0.63356015	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	5	0					1	15.044	15.044	2	1.2335999999999999E-58	6957	DP1145_10	196.88	97.885			80399000	2938	193	2742	4886	7159;7160	7159		2	9606
YLMEEDEDAYKK	Oxidation (M)	1548.6654	0.66539015	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	1	1	3	1.41	1			2		14.912	14.912	2;3	7.8383E-32	6927	DP1145_9	169.58	153.82			373600000	2939	278	2743	4887;4888;4889	7161;7162;7163;7164;7165;7166;7167	7163	264	7	9606
YLMEEDEDAYKK	Unmodified	1532.6705	0.67047553	278	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	4	0				1		16.059	16.059	3	2.539E-07	8678	DP1145_9	144.17	144.17			141720000	2940	278	2743	4890	7168;7169	7169		2	9606
YLSGADAGVDR	Unmodified	1122.5306	0.53055165	656	Q9BRD0	BUD13	BUD13 homolog	yes	yes	0	0	0	3.5	1.12		1	1	1	1	15.3	15.3	2	1.4755E-39	7531	DP1145_9	148.69	63.529			272100000	2941	656	2744	4891;4892;4893;4894	7170;7171;7172;7173	7173		3	9606
YLSQQWAK	Unmodified	1022.5185	0.5185304	170	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	4	0				1		16.288	16.288	2	3.724E-47	9084	DP1145_9	168.45	91.605			182840000	2942	170	2745	4895	7174	7174		0	9606
YLSSVSSQETQGGPLAPMTGTIEK	Oxidation (M)	2496.2054	0.20538427	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	1	0	2.33	1.37	2	2	1		1	17.853	17.853	2;3	1.174E-59	12498	DP1145_8	176.17	136.74			831000000	2943	639	2746	4896;4897;4898;4899;4900;4901	7175;7176;7177;7178;7179;7180;7181;7182	7181	551	7	9606
YLSSVSSQETQGGPLAPMTGTIEK	Unmodified	2480.2105	0.21046965	639	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	2.2	0.748	1	2	2			19.117	19.117	2;3	8.206200000000001E-274	14366	DP1145_8	350.92	285.43			384980000	2944	639	2746	4902;4903;4904;4905;4906	7183;7184;7185;7186;7187;7188;7189	7188		7	9606
YLTVAAIFR	Unmodified	1052.6019	0.6018661	460	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	0	0	3	0			1			20.525	20.525	2	0.029762	16584	DP1145_8	83.753	39.031			55273000	2945	460	2747	4907	7190	7190		1	9606
YLTVAAVFR	Unmodified	1038.5862	0.58621603	395;131	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	3.75	0.829			2	1	1	19.651	19.651	1;2	6.7890999999999995E-46	15113	DP1145_8	181.49	135.47			1132200000	2946	131;395	2748	4908;4909;4910;4911	7191;7192;7193;7194;7195	7192		5	9606
YLYEIAR	Unmodified	926.48617	0.48616764	10	CON__P02769			no	no	0	0	0	1	0	1					17.42	17.42	2	0.015743	9865	DP1145_6	107.74	0		+	23543000	2947	10	2749	4912	7196	7196		0	
YLYLTPQDYK	Unmodified	1302.6496	0.64960415	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	2	0.816	1	1	1			18.884	18.884	2	6.0438E-126	12240	DP1145_6	225.4	164.64			607170000	2948	438	2750	4913;4914;4915	7197;7198;7199;7200	7198		4	9606
YLYLTPQDYKR	Unmodified	1458.7507	0.75071518	438	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	1	1	0	2					17.454	17.454	2;3	2.2589E-26	10087	DP1145_6	163.32	130.06			433670000	2949	438	2751	4916;4917	7201;7202	7202		2	9606
YMACCLLYR	Unmodified	1248.5454	0.54535555	393;550;394	P68363;A6NHL2;Q71U36;P68366	TUBA1B;TUBAL3;TUBA1A;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	0	0	3	0			1			18.523	18.523	2	0.010685	13627	DP1145_8	93.262	93.262			296170000	2950	393;550;394	2752	4918	7203	7203		1	9606
YMACCLLYR	Oxidation (M)	1264.5403	0.54027017	393;550;394	P68363;A6NHL2;Q71U36;P68366	TUBA1B;TUBAL3;TUBA1A;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-1A chain;Tubulin alpha-4A chain	no	no	0	1	0	3	0			1			17.823	17.823	2	2.9509E-26	12363	DP1145_8	148.21	136			488470000	2951	393;550;394	2752	4919	7204	7204	338	0	9606
YMAMESSMGYFKLKK	3 Oxidation (M)	1860.846	0.84601382	797				yes	yes	0	3	2	4	0				1		23.568	23.568	2	0.021867	19953	DP1145_9	50.452	12.852	+		7940700	2952	797	2753	4920	7205	7205	649;650;651	1	9606
YMLLPNQVWDSIIQQATK	Oxidation (M)	2163.1034	0.1034258	44	O14980	XPO1	Exportin-1	yes	yes	0	1	0	2	0		1				23.472	23.472	2	2.1013E-12	21528	DP1145_7	143.25	90.32			4495200	2953	44	2754	4921	7206	7206	38	1	9606
YNEQHVPGSPFTAR	Unmodified	1601.7587	0.7586541	199	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	0	1					16.181	16.181	3	0.021565	7947	DP1145_6	77.068	48.444			0	2954	199	2755	4922	7207	7207		1	9606
YNHPKPNLLYQK	Unmodified	1513.8041	0.80414773	529	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	1	3	0			1			14.731	14.731	3	3.7148E-70	7519	DP1145_8	197.21	154.73			156620000	2955	529	2756	4923	7208;7209	7208		2	9606
YNIIPVLSDILQESVK	Unmodified	1830.0139	0.013865735	746	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	3	0			1			24.346	24.346	2	4.4985E-11	21924	DP1145_8	140.01	102.41			6694000	2956	746	2757	4924	7210;7211	7210		2	9606
YNILGTNTIMDK	Oxidation (M)	1397.6861	0.68606601	412	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	2	0		1				18.089	18.089	2	2.2529E-11	13477	DP1145_7	141.89	82.733			323640000	2957	412	2758	4925	7212;7213;7214	7212	371	3	9606
YNPNVLPVQCTGK	Unmodified	1488.7395	0.73949856	113	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	4	0				1		17.022	17.022	2	0.0066947	10219	DP1145_9	107.03	65.917			32903000	2958	113	2759	4926	7215	7215		0	9606
YNVLGAETVLNQMR	Unmodified	1606.8137	0.81372614	509	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	2	0		1				20.24	20.24	2	0.0034504	16841	DP1145_7	106.29	24.52			8786900	2959	509	2760	4927	7216	7216		1	9606
YPASTVQILGAEK	Unmodified	1375.7347	0.73473076	38	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	1	0	1					17.896	17.896	2	0.038911	10733	DP1145_6	85.924	49.98			0	2960	38	2761	4928	7217	7217		1	9606
YPEETLSLMTK	Unmodified	1310.6428	0.64280421	401	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	0	1					18.655	18.655	2	0.02219	11882	DP1145_6	77.533	27.997			21560000	2961	401	2762	4929	7218	7218		1	9606
YPENFFLLR	Unmodified	1197.6182	0.61824444	251;352	P36873;P62136;P62140	PPP1CC;PPP1CA;PPP1CB	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	no	no	0	0	0	2.5	1.12	1	1	1	1		20.934	20.934	2	0.0012108	17437	DP1145_8	131.03	81.495			812670000	2962	251;352	2763	4930;4931;4932;4933	7219;7220;7221;7222;7223;7224;7225	7223		7	9606
YPLVFSPQMVGFYIK	Oxidation (M)	1803.927	0.92696498	84	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	1	0	1	0	1					22.122	22.122	2	0.025876	17105	DP1145_6	87.568	45.864			0	2963	84	2764	4934	7226	7226	68	1	9606
YPMAVGLNK	Oxidation (M)	1007.511	0.51100218	778	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	1	0	5	0					1	15.709	15.709	2	0.0050969	7892	DP1145_10	94.262	30.956			124990000	2964	778	2765	4935	7227	7227	638	1	9606
YPMAVGLNK	Unmodified	991.51609	0.51608756	778	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	5	0					1	16.825	16.825	2	0.001064	9738	DP1145_10	124.34	30.336			0	2965	778	2765	4936	7228	7228		1	9606
YPPPTELLDLQPLPVSALR	Unmodified	2118.1725	0.17249164	82	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	0	1					22.591	22.591	2	4.5003E-09	17805	DP1145_6	147.52	107.15			0	2966	82	2766	4937	7229	7229		1	9606
YPSPFFVFGEK	Unmodified	1316.6441	0.64412484	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1.5	0.5	1	1				21.529	21.529	2	0.040556	16288	DP1145_6	96.143	39.511			28331000	2967	427	2767	4938;4939	7230;7231	7230		1	9606
YQAVTATLEEK	Unmodified	1251.6347	0.63468237	260	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	3	2	1				1	16.4	16.4	2	0.0072772	9074	DP1145_10	142.43	58.675			100340000	2968	260	2768	4940;4941	7232;7233	7232		2	9606
YQILPLHSQIPR	Unmodified	1463.8249	0.82488317	427	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	0	1					17.854	17.854	3	0.005001	10839	DP1145_6	84.821	57.851			50869000	2969	427	2769	4942	7234	7234		1	9606
YQLDPTASISAK	Unmodified	1292.6612	0.66123147	275	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	4	0				1		17.522	17.522	2	0.0058556	10999	DP1145_9	95.483	38.673			241050000	2970	275	2770	4943	7235	7235		1	9606
YQYGGLNSGRPVTPPR	Unmodified	1760.8958	0.89581629	352	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	1	4	0				1		16.058	16.058	2	0.025582	8755	DP1145_9	84.605	48.953			94104000	2971	352	2771	4944	7236	7236		0	9606
YSDMIVAAIQAEK	Oxidation (M)	1453.7123	0.71228076	130	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	yes	yes	0	1	0	4	0				1		18.423	18.423	2	0.0024903	12598	DP1145_9	97.452	63.365			90717000	2972	130	2772	4945	7237;7238	7237	118	2	9606
YSFLQFDPAPR	Unmodified	1339.6561	0.65608651	368	P67775;P62714	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	no	0	0	0	4	0				1		20.504	20.504	2	0.013774	15511	DP1145_9	134.25	85.964			0	2973	368	2773	4946	7239	7239		1	9606
YSGELSGIR	Unmodified	980.49271	0.49270958	708	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	3	0			1			16.077	16.077	2	0.00035839	9671	DP1145_8	135.77	103.16			130570000	2974	708	2774	4947	7240;7241	7241		2	9606
YSHLQPGDHLTDITLK	Unmodified	1836.937	0.9370124	485	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	3	0			1			17.023	17.023	3	0.0038504	11118	DP1145_8	103.88	71.06			68949000	2975	485	2775	4948	7242	7242		1	9606
YSLAVGPPK	Unmodified	930.51747	0.51746776	536	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	2	0		1				16.727	16.727	2	0.043116	11372	DP1145_7	75.213	36.407			58578000	2976	536	2776	4949	7243	7243		1	9606
YSLDPENPTK	Unmodified	1162.5506	0.55061839	193	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	5	0					1	16.686	16.686	2	6.4071E-107	9432	DP1145_10	221.94	195.5			225840000	2977	193	2777	4950	7244;7245	7244		2	9606
YSLQYYMGLAEELVR	Oxidation (M)	1849.892	0.89203604	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	1	0	1.5	0.5	2	2				22.514	22.514	2;3	4.6503E-27	19770	DP1145_7	163.51	125.27			122030000	2978	158	2778	4951;4952;4953;4954	7246;7247;7248;7249;7250;7251;7252	7249	171	7	9606
YSLQYYMGLAEELVR	Unmodified	1833.8971	0.89712142	158	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	2	0		1				24.149	24.149	2	3.1077E-73	22477	DP1145_7	216.84	175.68			3935500	2979	158	2778	4955	7253;7254	7253		2	9606
YSQLVVETIR	Unmodified	1206.6608	0.66083754	606	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	4	0				1		17.923	17.923	2	0.029526	11527	DP1145_9	78.098	56.012			40550000	2980	606	2779	4956	7255	7255		1	9606
YSSAGTVEFLVDSK	Unmodified	1501.73	0.73003931	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	2.5	0.5		1	1			19.346	19.346	2	3.7733E-88	14613	DP1145_8	204.56	132.87			1121800000	2981	115	2780	4957;4958	7256;7257;7258	7257		3	9606
YSSAGTVEFLVDSKK	Unmodified	1629.825	0.82500233	115	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	1	3	0			1			18.006	18.006	3	0.0035456	12707	DP1145_8	111.72	84.964			159120000	2982	115	2781	4959	7259;7260	7259		2	9606
YSVDIPLDK	Unmodified	1048.5441	0.54407645	345	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	5	0					1	18.148	18.148	2	0.0072359	11968	DP1145_10	119.21	58.451			495310000	2983	345	2782	4960	7261	7261		1	9606
YTAAVPYR	Unmodified	939.48142	0.48141661	738	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	1	0	1					15.632	15.632	2	0.011628	7312	DP1145_6	97.071	59.912			42176000	2984	738	2783	4961	7262	7262		1	9606
YTFNEDEGELPEWFVQEEK	Unmodified	2388.0434	0.043387542	575	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	2	0		1				21.846	21.846	2	4.6193E-37	19054	DP1145_7	211.83	187.13			27011000	2985	575	2784	4962	7263	7263		1	9606
YTSEKEEGTPWNEDCGK	Unmodified	2028.8371	0.83709994	551	Q76FK4	NOL8	Nucleolar protein 8	yes	yes	0	0	1	2	0		1				15.435	15.435	3	0.017964	9328	DP1145_7	109.14	100.72			44029000	2986	551	2785	4963	7264	7264		1	9606
YVASYLLAALGGNSSPSAK	Unmodified	1867.968	0.96797818	118	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	5	0					1	21.494	21.494	3	5.4944E-38	16703	DP1145_10	170	170			59208000	2987	118	2786	4964	7265;7266	7265		2	9606
YVELFLNSTAGASGGAYEHR	Unmodified	2141.0178	0.017781914	232	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	3	0			2			18.723	18.723	2;3	3.0177E-09	13902	DP1145_8	136.66	111.48			151590000	2988	232	2787	4965;4966	7267;7268;7269	7267		3	9606
YVIYIER	Unmodified	954.51747	0.51746776	342	Q9UNX3;P61254	RPL26L1;RPL26	60S ribosomal protein L26-like 1;60S ribosomal protein L26	yes	no	0	0	0	5	0					1	17.748	17.748	2	0.00025719	11233	DP1145_10	123.99	82.78			141710000	2989	342	2788	4967	7270	7270		1	9606
YVKPTEPVTDYR	Unmodified	1466.7405	0.74054442	679	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	1	3	0			1			15.278	15.278	3	4.4148E-11	8303	DP1145_8	142.76	123.49			395590000	2990	679	2789	4968	7271;7272	7271		2	9606
YWLCAATGPSIK	Unmodified	1365.6751	0.67510739	388	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	4	0				1		18.58	18.58	2	0.031284	13283	DP1145_9	85.355	46.601			11750000	2991	388	2790	4969	7273	7273		0	9606
YYGLQILENVIK	Unmodified	1451.8024	0.8024164	44	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2	0.816	1	1	1			22.598	22.598	2	7.3175E-08	20060	DP1145_7	153.24	120.83			15737000	2992	44	2791	4970;4971;4972	7274;7275;7276;7277	7275		4	9606
YYPTEDVPR	Unmodified	1138.5295	0.52948901	419	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	4	0				1		16.288	16.288	2	0.033446	9220	DP1145_9	80.165	57.928			228070000	2993	419	2792	4973	7278	7278		1	9606
YYVTIIDAPGHR	Unmodified	1403.7197	0.7197494	391	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	3.33	0.471			2	1		17.423	17.423	2;3	5.828E-11	11696	DP1145_8	174.02	134.48			1174900000	2994	391	2793	4974;4975;4976	7279;7280;7281;7282;7283	7279		5	9606
